About Workflow Order in PHG v2 Architecture vs Tutorial

[hyoj-seo]

Hi there,

I’m continuing to explore and use your program, and while reviewing the documentation I came across something I’d like to clarify. According to the architecture diagram (https://github.com/maize-genetics/phg_v2/blob/main/docs/img/architecture/phg_v2_architecture_20240411.svg), it looks like the workflow to reach the Client stage is Build and Load → Rare Allele Discovery → Imputation. However, the tutorial describes the order as Build and Load → Imputation → Rare Allele Discovery. Could you explain the relationship between these two sequences and why they differ?

Thank you!