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Add example notebook demonstrating cohort_geometries() API
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notebooks/cohort_geometries.ipynb

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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"import malariagen_data"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"ag3 = malariagen_data.Ag3(\n",
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" \"simplecache::gs://vo_agam_release_master_us_central1\",\n",
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" simplecache=dict(cache_storage=\"../gcs_cache\"),\n",
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")\n",
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"ag3"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"geojson = ag3.cohort_geometries(cohort_set=\"admin1_year\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"type(geojson)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"geojson.keys()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"len(geojson[\"features\"])"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"for f in geojson[\"features\"][:3]:\n",
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" print(f[\"properties\"])"
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]
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3 (ipykernel)",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"name": "python",
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"version": "3.10.0"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 4
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}

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