docker-sc/pyproject.toml at main · malteborggrewe/docker-sc · GitHub

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[tool.poetry]
name = "single-cell"
description = "Tools for single-cell analysis"
version = "0.1.0"
authors = ["Malte Borggrewe <hello@malteborggrewe.de>"]
license = "n"

[tool.poetry.dependencies]
python = ">=3.10,<3.13"
scanpy = "1.9.8"
pandas = "^2.2.1"
numpy = "^1.26.4"
seaborn = "^0.13.2"
matplotlib = "^3.8.3"
pyyaml = "^6.0.1"
tbb = "^2021.12.0"
harmonypy = "^0.0.9"
leidenalg = "^0.10.2"
scirpy = "^0.16.0"
matplotlib-venn = "^0.11.10"
mudata = "^0.2.3"
muon = "^0.1.5"
preproc = "^23.2.13"
scrublet = "^0.2.3"
umap-learn = "^0.5.5"
gseapy = "1.0.3"
celltypist = "^1.6.2"
decoupler = "^1.6.0"
pydeseq2 = "^0.4.8"
pyscenic = "^0.12.1"
liana = {version = "^1.1.0", python = "^3.9, <3.12"}
cell2cell = "^0.7.3"
annotator = "^0.14.2"
omnipath = "^1.0.8"
sc-dandelion = "^0.3.6.post1"
squidpy = "^1.6.2"
scvelo = "^0.3.2"
anndata = "0.10.8"


[tool.poetry.group.dev.dependencies]
ipykernel = "^6.29.4"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"