Merge pull request #456 from mapme-initiative/develop

updated reference urls and dois

Author: zivankaraman

R/calc_burned_area.R

@@ -16,7 +16,7 @@
 #' @references Giglio, L., C. Justice, L. Boschetti, D. Roy. MODIS/Terra+Aqua
 #'   Burned Area Monthly L3 Global 500m SIN Grid V061. 2021, distributed by
 #'   NASA EOSDIS Land Processes Distributed Active Archive Center.
-#'   \doi{https://doi.org/10.5067/MODIS/MCD64A1.061}
+#'   \doi{doi:10.5067/MODIS/MCD64A1.061}
 #' @include register.R
 #' @export
 #' @examples

R/calc_fatalities_acled.R

@@ -48,7 +48,7 @@
 #' @references Raleigh, C., Kishi, R. & Linke, A. Political instability patterns
 #'   are obscured by conflict dataset scope conditions, sources, and coding
 #'   choices. Humanit Soc Sci Commun 10, 74 (2023).
-#'   \doi{https://doi.org/10.1057/s41599-023-01559-4}
+#'   \doi{doi:10.1057/s41599-023-01559-4}
 #' @include register.R
 #' @export
 #' @examples

R/get_acled.R

@@ -24,7 +24,7 @@
 #' @references Raleigh, C., Kishi, R. & Linke, A. Political instability patterns
 #'   are obscured by conflict dataset scope conditions, sources, and coding
 #'   choices. Humanit Soc Sci Commun 10, 74 (2023).
-#'   \doi{https://doi.org/10.1057/s41599-023-01559-4}
+#'   \doi{doi:10.1057/s41599-023-01559-4}
 #' @source Armed Conflict Location & Event Data Project (ACLED).
 #' @include register.R
 #' @importFrom httr2 request req_perform resp_check_status resp_body_json

R/get_biodiversity_intactness_index.R

@@ -16,7 +16,7 @@
 #' @references Tim Newbold; Lawrence Hudson; Andy Arnell; Sara Contu et al.
 #'   (2016). Global map of the Biodiversity Intactness Index, from Newbold et al.
 #'   (2016) Science \[Data set\]. Natural History Museum.
-#'   \doi{https://doi.org/10.5519/0009936}
+#'   \doi{doi:10.5519/0009936}
 #' @include register.R
 #' @export
 get_biodiversity_intactness_index <- function(path = NULL) {

R/get_carbon.R

@@ -19,7 +19,7 @@
 #' @returns A function that returns an `sf` footprint object.
 #' @references Noon, M.L., Goldstein, A., Ledezma, J.C. et al. Mapping the
 #'   irrecoverable carbon in Earth’s ecosystems. Nat Sustain 5, 37–46 (2022).
-#'   https://doi.org/10.1038/s41893-021-00803-6
+#'   \doi{doi:10.1038/s41893-021-00803-6}
 #' @source \url{https://zenodo.org/records/4091029}
 #' @include register.R
 #' @export

R/get_chelsa.R

@@ -17,12 +17,12 @@
 #' @references Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H.,
 #'   Soria-Auza, R.W., Zimmermann, N.E., Linder, H.P. & Kessler, M. (2021)
 #'   Climatologies at high resolution for the earth’s land surface areas.
-#'   EnviDat. \doi{https://doi.org/10.16904/envidat.228.v2.1}
+#'   EnviDat. \doi{doi:10.16904/envidat.228.v2.1}
 #'
 #'   Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza,
 #'   R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high
 #'   resolution for the Earth land surface areas. Scientific Data. 4
-#'   170122. \doi{https://doi.org/10.1038/sdata.2017.122}
+#'   170122. \doi{doi:10.1038/sdata.2017.122}
 #' @include register.R
 #' @export
 get_chelsa <- function(years = 1979:2019) {

R/get_esalandcover.R

@@ -19,7 +19,7 @@
 #' @references Buchhorn, M., Lesiv, M., Tsendbazar, N.-E., Herold, M., Bertels, L.,
 #' & Smets, B. (2020). Copernicus Global Land Cover Layers - Collection 2.
 #' Remote Sensing, 12(6), 1044.
-#' \url{https://doi.org/10.3390/rs12061044}
+#' \doi{doi:10.3390/rs12061044}
 #' @source \url{https://zenodo.org/records/3939050}
 #' @include register.R
 #' @export

R/get_gfw_emissions.R

@@ -22,7 +22,7 @@
 #' @returns A function that returns an `sf` footprint object.
 #' @references Harris, N.L., Gibbs, D.A., Baccini, A. et al. Global maps of
 #' twenty-first century forest carbon fluxes. Nat. Clim. Chang. 11, 234–240
-#' (2021). https://doi.org/10.1038/s41558-020-00976-6
+#' (2021). \doi{doi:10.1038/s41558-020-00976-6}
 #' @source \url{https://data.globalforestwatch.org/datasets/gfw::forest-greenhouse-gas-emissions/about}
 #' @include register.R
 #' @export

R/get_gsw.R

@@ -22,7 +22,7 @@
 #' @returns A function that returns an `sf` footprint object.
 #' @references Pekel, JF., Cottam, A., Gorelick, N. et al. High-resolution
 #' mapping of global surface water and its long-term changes. Nature 540,
-#' 418–422 (2016). https://doi.org/10.1038/nature20584
+#' 418–422 (2016). \doi{doi:10.1038/nature20584}
 #' @source \url{https://global-surface-water.appspot.com/}
 #' @include register.R
 #' @export
@@ -70,7 +70,7 @@ get_global_surface_water_change <- function(version = "v1_4_2021") {
 #' @returns  A character of file paths.
 #' @references Pekel, JF., Cottam, A., Gorelick, N. et al. High-resolution
 #' mapping of global surface water and its long-term changes. Nature 540,
-#' 418–422 (2016). https://doi.org/10.1038/nature20584
+#' 418–422 (2016). \doi{doi:10.1038/nature20584}
 #' @source \url{https://global-surface-water.appspot.com/}
 #' @include register.R
 #' @export
@@ -106,7 +106,7 @@ get_global_surface_water_transitions <- function(version = "v1_4_2021") {
 #' @returns  A character of file paths.
 #' @references Pekel, JF., Cottam, A., Gorelick, N. et al. High-resolution
 #' mapping of global surface water and its long-term changes. Nature 540,
-#' 418–422 (2016). https://doi.org/10.1038/nature20584
+#' 418–422 (2016). \doi{doi:10.1038/nature20584}
 #' @source \url{https://global-surface-water.appspot.com/}
 #' @include register.R
 #' @export
@@ -145,7 +145,7 @@ get_global_surface_water_seasonality <- function(version = "v1_4_2021") {
 #' @returns  A character of file paths.
 #' @references Pekel, JF., Cottam, A., Gorelick, N. et al. High-resolution
 #' mapping of global surface water and its long-term changes. Nature 540,
-#' 418–422 (2016). https://doi.org/10.1038/nature20584
+#' 418–422 (2016). \doi{doi:10.1038/nature20584}
 #' @source \url{https://global-surface-water.appspot.com/}
 #' @include register.R
 #' @export
@@ -183,7 +183,7 @@ get_global_surface_water_recurrence <- function(version = "v1_4_2021") {
 #' @returns  A character of file paths.
 #' @references Pekel, JF., Cottam, A., Gorelick, N. et al. High-resolution
 #' mapping of global surface water and its long-term changes. Nature 540,
-#' 418–422 (2016). https://doi.org/10.1038/nature20584
+#' 418–422 (2016). \doi{doi:10.1038/nature20584}
 #' @source \url{https://global-surface-water.appspot.com/}
 #' @include register.R
 #' @export

R/get_hfp.R

@@ -28,7 +28,7 @@
 #' @returns A function that returns an `sf` footprint object.
 #' @references Mu, H., Li, X., Wen, Y. et al. A global record of annual
 #' terrestrial Human Footprint dataset from 2000 to 2018. Sci Data 9, 176 (2022).
-#' \doi{https://doi.org/10.1038/s41597-022-01284-8}
+#' \doi{doi:10.1038/s41597-022-01284-8}
 #' @source \url{https://figshare.com/articles/figure/An_annual_global_terrestrial_Human_Footprint_dataset_from_2000_to_2018/16571064}
 #' @importFrom utils unzip download.file
 #' @include register.R