Add linting for TSV and MD (#36)

Author: cthoyt

.github/workflows/lint.yml

@@ -0,0 +1,38 @@
+# This file configures the continuous integration (CI) system on GitHub.
+# Introductory materials can be found here: https://docs.github.com/en/actions/learn-github-actions/understanding-github-actions.
+# Documentation for editing this file can be found here: https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions
+
+name: Lint
+
+# by default, give the GITHUB_TOKEN no permissions
+# See https://docs.github.com/en/actions/writing-workflows/choosing-what-your-workflow-does/controlling-permissions-for-github_token
+permissions: { }
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  lint:
+    name: Lint
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ "3.14" ]
+    steps:
+      - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3
+        with:
+          persist-credentials: false
+
+      - name: Lint Markdown
+        run: npx --yes prettier --check --prose-wrap always "**/*.md"
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
+
+      - name: Lint TSV
+        run: uv run --script lint.py

README.md

@@ -1,27 +1,39 @@
 # SEMAPV: A Vocabulary for Semantic Mappings
 
-The Semantic Mapping Vocabulary (SEMAPV) is a vocabulary about the processes, entities and agents involved in the curation of mappings. It is being developed in conjunction with the [Simple Standard for Sharing Ontology Mappings (SSSOM)](https://mapping-commons.github.io/sssom/spec/), providing a detailed vocabulary to describe, for example, different kinds of matching processes (lexical, logical, etc), as well as pre- and post-processing techniques employed.
+The Semantic Mapping Vocabulary (SEMAPV) is a vocabulary about the processes,
+entities and agents involved in the curation of mappings. It is being developed
+in conjunction with the
+[Simple Standard for Sharing Ontology Mappings (SSSOM)](https://mapping-commons.github.io/sssom/spec/),
+providing a detailed vocabulary to describe, for example, different kinds of
+matching processes (lexical, logical, etc.), as well as pre- and post-processing
+techniques employed.
 
 To cite: http://doi.org/10.5281/zenodo.7672104
 
 **SEMAPV is currently in beta state and is likely still undergoing changes.**
 
-### Core editorial Team
+### Core Editorial Team
 
-* [Nicolas Matentzoglu](https://orcid.org/0000-0002-7356-1779) (Semanticly Ltd; [@matentzn](https://github.com/matentzn))
-* [Chris Mungall](https://orcid.org/0000-0002-6601-2165) (LBL; [@cmungall](https://github.com/matentzn))
-* [Ernesto Jimenez-Ruiz](https://orcid.org/0000-0002-9083-4599) (City, University of London)
-* [Catia Pesquita](https://orcid.org/0000-0002-1847-9393) (University of Lisbon)
-* [John Graybeal](https://orcid.org/0000-0001-6875-5360) (Stanford)
-* [Charlie Hoyt](https://orcid.org/0000-0003-4423-4370) (Harvard Medical School; [@cthoyt](https://github.com/cthoyt))
-* [Thomas Liener](https://orcid.org/0000-0003-3257-9937) (Pistoia Alliance)
+- [Nicolas Matentzoglu](https://orcid.org/0000-0002-7356-1779) (Semanticly Ltd;
+  [@matentzn](https://github.com/matentzn))
+- [Chris Mungall](https://orcid.org/0000-0002-6601-2165) (LBL;
+  [@cmungall](https://github.com/cmungall))
+- [Ernesto Jimenez-Ruiz](https://orcid.org/0000-0002-9083-4599) (City,
+  University of London)
+- [Catia Pesquita](https://orcid.org/0000-0002-1847-9393) (University of Lisbon)
+- [John Graybeal](https://orcid.org/0000-0001-6875-5360) (Stanford)
+- [Charlie Hoyt](https://orcid.org/0000-0003-4423-4370) (RWTH Aachen University;
+  [@cthoyt](https://github.com/cthoyt))
+- [Thomas Liener](https://orcid.org/0000-0003-3257-9937) (Pistoia Alliance)
 
-Please join the team by making an issue in the [issue tracker](https://github.com/mapping-commons/semantic-mapping-vocabulary/issues).
+Please join the team by making an issue in the
+[issue tracker](https://github.com/mapping-commons/semantic-mapping-vocabulary/issues).
 
 ### Overview
 
 A snapshot of the current SEMAPV hierarchy can be seen here:
 
 <img width="461" alt="image" src="https://user-images.githubusercontent.com/7070631/169400247-3873c86d-5761-4609-8a86-8007542cf868.png">
 
-A preliminary [LODE](https://github.com/rdflib/pyLODE) documentation can be found here: https://mapping-commons.github.io/semantic-mapping-vocabulary/.
+A preliminary [LODE](https://github.com/rdflib/pyLODE) documentation can be
+found here: https://mapping-commons.github.io/semantic-mapping-vocabulary/.

lint.py

@@ -0,0 +1,23 @@
+# /// script
+# requires-python = ">=3.14"
+# dependencies = [
+#     "pandas>=3.0.3",
+# ]
+# ///
+
+import sys
+from pathlib import Path
+
+import pandas as pd
+
+HERE = Path(__file__).parent.resolve()
+
+if __name__ == "__main__":
+    fail = False
+    for path in HERE.glob("*.tsv"):
+        original = path.read_text()
+        corrected = pd.read_csv(path, sep="\t").to_csv(sep="\t", index=False)
+        if original != corrected:
+            print(f"TSV not formatted properly: {path}")
+            fail = True
+    sys.exit(1 if fail else 0)