Does not work with some non-Python packages

[yamaton]

Problem

Some non-Python packages fail to resolve dependencies. It seems a conda environment is not activated properly.

Example

Following command raises a perl dependency error.

condax install -c conda-forge -c bioconda agat
agat_convert_sp_gxf2gxf.pl --help

But running the executable within the conda environment works.

conda create -y -n agat -c conda-forge -c bioconda agat
conda run -n agat agat_convert_sp_gxf2gxf.pl --help

Proposal

Wrapping an executable with conda run would work better than a symlink.