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README.md

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Open-source, MATLAB-based software for automated data processing and quantification of edited <sup>1</sup>H magnetic resonance spectroscopy (MRS) data.
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Full software documentation can be found [here](https://markmikkelsen.github.io/Gannet-docs/index.html). Visit our [blog](https://gabamrs.com/) for the latest news on Gannet and our developments in edited MRS methodology.
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Full software documentation can be found [here](https://markmikkelsen.github.io/Gannet-docs/index.html).
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## Overview
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Gannet is a free, open-source MATLAB-based software toolkit for analyzing edited 1H magnetic resonance spectroscopy (MRS) data. Its largely automated functions cover all the essential steps of modern MRS analysis:
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Gannet is a free, open-source MATLAB-based software toolkit for analyzing edited <sup>1</sup>H magnetic resonance spectroscopy (MRS) data. Its largely automated functions cover all the essential steps of modern MRS analysis:
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- Loading raw data
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- Substantial preprocessing
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### Download
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The simplest way to install Gannet is to download the code from the [GitHub repository](https://github.com/markmikkelsen/Gannet) and move the `Gannet-main/` directory into your MATLAB directory.
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The simplest way to install Gannet is to download the code from the <a href="https://github.com/markmikkelsen/Gannet" target="_blank">GitHub repository</a> and move the `Gannet-main/` directory into your MATLAB directory.
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Alternatively, git-savvy users can clone the Gannet repository into a directory of their choice:
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`git clone https://github.com/markmikkelsen/Gannet.git`
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The development version can downloaded from the [development branch](https://github.com/markmikkelsen/Gannet/tree/dev) on GitHub or by using the following git command if the repository was cloned:
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The development version can be downloaded from the <a href="https://github.com/markmikkelsen/Gannet/tree/dev" target="_blank">development branch</a> on GitHub or by using the following git command if the repository was cloned:
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`git checkout dev`
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Stable releases can be found [here](https://github.com/markmikkelsen/Gannet/releases).
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Stable releases can be found <a href="https://github.com/markmikkelsen/Gannet/releases" target="_blank">here</a>.
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### Setup
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Otherwise, you can post your query on the [Gannet forum](https://forum.mrshub.org/c/mrs-software/gannet/9) on the [MRSHub](https://mrshub.org/).
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The support team can also be directly reached using our blog's [contact form](https://gabamrs.com/contact). We will do our best to work with you to solve your issue.
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The Gannet team can also be directly <a href="mailto:[email protected]?subject=[Gannet]%20<subject>" target="_blank">contacted</a>. We will do our best to work with you to solve your issue.
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## Versioning
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[Semantic versioning](https://semver.org/) is used when updates are made to Gannet using the style 'x.x.x'. Versioning is also conducted on a module-specific basis using the style 'YYMMDD'. That is, each Gannet module has its own release version.
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- Alex Craven (University of Bergen)
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- Philipp Ehses (Max Planck Institute for Biological Cybernetics)
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- Robin de Graaf (Yale School of Medicine)
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- Xiangrui Li (Ohio State University)
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- Jamie Near (McGill University)
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- Ralph Noeske (GE Healthcare)
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- Wouter Potters (UMC Amsterdam)
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- Jan Simon (Heidelberg)

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