Revert "Merge branch 'BIDS' into main"

Author: markmikkelsen

GannetLoad.m

@@ -20,7 +20,7 @@
 end
 
 MRS_struct.loadtime       = datetime('now');
-MRS_struct.version.Gannet = '3.4.1-dev';
+MRS_struct.version.Gannet = '3.4.0';
 MRS_struct.version.load   = '250805';
 VersionCheck(0, MRS_struct.version.Gannet);
 ToolboxCheck;
@@ -50,27 +50,25 @@
 
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%   0. Parse input arguments and check filenames
+%   0. Parse the input arguments and check for typos
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
-assert(iscell(var_args{1}), 'Filenames must be entered as cell arrays.');
 metabfile = var_args{1};
 metabfile = GetFullPath(metabfile);
 missing = 0;
 for filecheck = 1:numel(metabfile)
     if ~exist(metabfile{filecheck}, 'file')
-        fprintf('\nFile #%d in the input list, ''%s'', could not be found.\nPlease check that the filename is correct.\n', filecheck, metabfile{filecheck});
+        fprintf('\nThe file ''%s'' (#%d) is missing. Typo?\n', metabfile{filecheck}, filecheck);
         missing = 1;
     end
 end
 
 if num_args > 1 && ~isempty(var_args{2})
-    assert(iscell(var_args{2}), 'Water reference filenames must be entered as cell arrays.');
     waterfile = var_args{2};
     waterfile = GetFullPath(waterfile);
     for filecheck = 1:numel(waterfile)
         if ~exist(waterfile{filecheck}, 'file')
-            fprintf('\nWater reference file #%d in the input list, ''%s'', could not be found.\nPlease check that the filename is correct.\n', filecheck, waterfile{filecheck});
+            fprintf('\nThe water reference file ''%s'' (#%d) is missing. Typo?\n', waterfile{filecheck}, filecheck);
             missing = 1;
         end
     end

GannetSegment.m

@@ -126,7 +126,6 @@
         MRS_struct.out.QA.CV_GM(ii) = std(GMvol_thresh, 'omitnan') / mean(GMvol_thresh, 'omitnan');
         MRS_struct.out.QA.CJV(ii)   = (std(WMvol_thresh, 'omitnan') + std(GMvol_thresh, 'omitnan')) ...
                                           / abs(mean(WMvol_thresh, 'omitnan') - mean(GMvol_thresh, 'omitnan'));
-        MRS_struct.out.QA.SNR(ii)   = std([WMvol_thresh; GMvol_thresh], 'omitnan') / mean([WMvol_thresh; GMvol_thresh], 'omitnan');
         MRS_struct.out.QA.CNR(ii)   = abs(mean(WMvol_thresh, 'omitnan') - mean(GMvol_thresh, 'omitnan')) / ...
                                           sqrt(var(airvol_thresh, 'omitnan') + var(WMvol_thresh, 'omitnan') + var(GMvol_thresh, 'omitnan'));