Merge branch 'bids-standard:master' into master

Author: markmikkelsen

.all-contributorsrc

@@ -274,6 +274,14 @@
             "name": "Anthony Galassi",
             "profile": "https://github.com/bendhouseart"
         },
+        {
+            "contributions": [
+                "doc"
+            ],
+            "login": "arianna_sala",
+            "name": "Arianna Sala",
+            "profile": "https://www.coma.uliege.be/people/arianna-sala/"
+        },
         {
             "avatar_url": [
                 "https://avatars.githubusercontent.com/u/118582?v=4"
@@ -383,10 +391,13 @@
         },
         {
             "contributions": [
-                "doc"
+                "doc",
+                "code",
+                "test"
             ],
             "login": "benjamin_dichter",
-            "name": "Benjamin Dichter"
+            "name": "Benjamin Dichter",
+            "profile": "https://bendichter.com/"
         },
         {
             "contributions": [
@@ -1999,11 +2010,14 @@
         {
             "avatar_url": "https://avatars.githubusercontent.com/u/6051303?v=4",
             "contributions": [
-                "doc"
+                "doc",
+                "code",
+                "data",
+                "review"
             ],
             "login": "markmikkelsen",
             "name": "Mark Mikkelsen",
-            "profile": "https://vivo.weill.cornell.edu/display/cwid-mam4041"
+            "profile": "https://mikkelsenlab.weill.cornell.edu/"
         },
         {
             "contributions": [
@@ -2303,6 +2317,13 @@
             "login": "nicole_c_swann",
             "name": "Nicole C. Swann"
         },
+        {
+            "contributions": [
+                "doc"
+            ],
+            "login": "nbeliy",
+            "name": "Nikita Beliy"
+        },
         {
             "contributions": [
                 "doc"
@@ -2636,6 +2657,13 @@
             "login": "samuel_garcia",
             "name": "Samuel Garcia"
         },
+        {
+            "contributions": [
+                "doc"
+            ],
+            "login": "SamGuay",
+            "name": "Samuel Guay"
+        },
         {
             "avatar_url": [
                 "https://avatars.githubusercontent.com/u/3496566?v=4"
@@ -3079,6 +3107,13 @@
             "login": "viacovella",
             "name": "Vittorio Iacovella"
         },
+        {
+            "contributions": [
+                "doc"
+            ],
+            "login": "viviana_siless",
+            "name": "Viviana Siless"
+        },
         {
             "contributions": [
                 "doc"

.github/workflows/changelog_generator.yml

@@ -123,7 +123,7 @@ jobs:
             git add ${{ github.workspace }}/src/CHANGES.md
             git commit -m "[DOC] Auto-generated changelog entry"
         - name: Create Pull Request
-          uses: peter-evans/create-pull-request@v6
+          uses: peter-evans/create-pull-request@v7
           with:
             token: ${{ secrets.GITHUB_TOKEN }}
             branch: changelog_generator_update

.github/workflows/publish_schema.yml

@@ -4,8 +4,6 @@ on:
   push:
     branches:
       - "master"
-    tags:
-      - "schema-*"
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}

.github/workflows/schemacode_ci.yml

@@ -33,7 +33,7 @@ jobs:
       - name: "Install build dependencies"
         run: pip install --upgrade build twine
       - name: "Install test dependencies on tag"
-        run: pip install --upgrade tools/schemacode[tests]
+        run: pip install --upgrade tools/schemacode[all]
         if: ${{ startsWith(github.ref, 'refs/tags/schema-') }}
       - name: "Build archive on tag"
         run: pytest tools/schemacode/bidsschematools -k make_archive

.tributors

@@ -244,6 +244,16 @@
         "name": "Anthony Galassi",
         "orcid": "0000-0001-6550-4574"
     },
+    "arianna_sala": {
+        "affiliation": "université de Liège, Belgium",
+        "blog": "https://www.coma.uliege.be/people/arianna-sala/",
+        "contributions": [
+            "doc"
+        ],
+        "email": "[email protected]",
+        "name": "Arianna Sala",
+        "orcid": "0000-0001-8121-0891"
+    },
     "arokem": {
         "affiliation": "University of Washington, Psychology, Seattle, WA, 98107, United States of America",
         "blog": "https://arokem.org/",
@@ -348,10 +358,17 @@
         "publish_email": true
     },
     "benjamin_dichter": {
+        "affiliation": "CatalystNeuro",
+        "blog": "https://bendichter.com/",
         "contributions": [
-            "doc"
+            "doc",
+            "code",
+            "test"
         ],
-        "name": "Benjamin Dichter"
+        "email": "[email protected]",
+        "github": "bendichter",
+        "name": "Benjamin Dichter",
+        "orcid": "0000-0001-5725-6910"
     },
     "benjamin_gagl": {
         "affiliation": "University of Vienna",
@@ -1941,12 +1958,16 @@
         "name": "Marie-Hélène Bourget"
     },
     "markmikkelsen": {
-        "affiliation": "Weill Cornell Medicine, Department of Radiology, New York, NY, 10021, USA",
-        "blog": "https://vivo.weill.cornell.edu/display/cwid-mam4041",
+        "affiliation": "Weill Cornell Medicine",
+        "blog": "https://mikkelsenlab.weill.cornell.edu/",
         "contributions": [
-            "doc"
+            "doc",
+            "code",
+            "data",
+            "review"
         ],
         "email": "[email protected]",
+        "github": "markmikkelsen",
         "name": "Mark Mikkelsen",
         "orcid": "0000-0002-0349-3782",
         "publish_email": true
@@ -2241,6 +2262,16 @@
         ],
         "name": "Nicole C. Swann"
     },
+    "nbeliy": {
+        "affiliation": "University of Liege (Liege, Belgium)",
+        "contributions": [
+            "doc"
+        ],
+        "email": "[email protected]",
+        "github": "nbeliy",
+        "name": "Nikita Beliy",
+        "orcid": "0009-0002-0830-3279"
+    },
     "nima_bigdely_shamlo": {
         "contributions": [
             "doc"
@@ -2556,6 +2587,16 @@
         ],
         "name": "Samuel Garcia"
     },
+    "SamGuay": {
+        "affiliation": "Université de Montréal, Montreal, Québec, CA",
+        "contributions": [
+            "doc"
+        ],
+        "email": "[email protected]",
+        "github": "SamGuay",
+        "name": "Samuel Guay",
+        "orcid": "0000-0001-6990-839X"
+    },
     "snastase": {
         "affiliation": "Princeton University",
         "blog": "https://snastase.github.io/",
@@ -3005,6 +3046,14 @@
         "name": "Vittorio Iacovella",
         "orcid": "0000-0002-0853-1573"
     },
+    "viviana_siless": {
+        "affiliation": "Business School, Universidad Torcuato di Tella",
+        "contributions": [
+            "doc"
+        ],
+        "email": "[email protected]",
+        "name": "Viviana Siless"
+    },
     "vladimir_litvak": {
         "affiliation": "UCL Queen Square Institute of Neurology",
         "contributions": [

CITATION.cff

@@ -5,9 +5,10 @@ cff-version: 1.2.0
 title: The Brain Imaging Data Structure (BIDS) Specification
 
 abstract: >-
-  The Brain Imaging Data Structure (BIDS) is a simple and intuitive way to organize and describe data.
+  The Brain Imaging Data Structure (BIDS) is a simple and intuitive way to organize
+  and describe data.
 
-version: 1.10.0-dev
+version: 1.10.1-dev
 
 license: CC-BY-4.0
 
@@ -142,6 +143,12 @@ authors:
     family-names: Galassi
     website: https://github.com/bendhouseart
     orcid: https://orcid.org/0000-0001-6550-4574
+  - given-names: Arianna
+    family-names: Sala
+    website: https://www.coma.uliege.be/people/arianna-sala/
+    orcid: https://orcid.org/0000-0001-8121-0891
+    affiliation: université de Liège, Belgium
+    email: [email protected]
   - given-names: Ariel
     family-names: Rokem
     website: https://arokem.org/
@@ -189,6 +196,10 @@ authors:
     website: https://github.com/musicinmybrain
   - given-names: Benjamin
     family-names: Dichter
+    website: https://bendichter.com/
+    orcid: https://orcid.org/0000-0001-5725-6910
+    affiliation: CatalystNeuro
+    email: [email protected]
   - given-names: Benjamin
     family-names: Gagl
     orcid: https://orcid.org/0000-0002-2339-6293
@@ -872,10 +883,9 @@ authors:
     website: https://github.com/mariehbourget
   - given-names: Mark
     family-names: Mikkelsen
-    website: https://vivo.weill.cornell.edu/display/cwid-mam4041
+    website: https://mikkelsenlab.weill.cornell.edu/
     orcid: https://orcid.org/0000-0002-0349-3782
-    affiliation: Weill Cornell Medicine, Department of Radiology, New York, NY, 10021,
-      USA
+    affiliation: Weill Cornell Medicine
     email: [email protected]
   - given-names: Markus
     family-names: Morawski
@@ -993,6 +1003,11 @@ authors:
     family-names: Ramsey
   - given-names: Nicole C.
     family-names: Swann
+  - given-names: Nikita
+    family-names: Beliy
+    orcid: https://orcid.org/0009-0002-0830-3279
+    affiliation: University of Liege (Liege, Belgium)
+    email: [email protected]
   - given-names: Nima
     family-names: Bigdely Shamlo
     orcid: https://orcid.org/0000-0001-6403-892X
@@ -1077,7 +1092,8 @@ authors:
     email: [email protected]
   - given-names: Robert B.
     family-names: Innis
-    website: https://www.nimh.nih.gov/research/research-conducted-at-nimh/research-areas/clinics-and-labs/mib/molecular-imaging-branch-mib
+    website:
+      https://www.nimh.nih.gov/research/research-conducted-at-nimh/research-areas/clinics-and-labs/mib/molecular-imaging-branch-mib
     orcid: https://orcid.org/0000-0003-1238-7209
     affiliation: NIMH Intramural Research Program, Bethesda, MD 20850 USA, MD 20892  USA
     email: [email protected]
@@ -1121,6 +1137,11 @@ authors:
     website: https://github.com/samirdas
   - given-names: Samuel
     family-names: Garcia
+  - given-names: Samuel
+    family-names: Guay
+    orcid: https://orcid.org/0000-0001-6990-839X
+    affiliation: Université de Montréal, Montreal, Québec, CA
+    email: [email protected]
   - given-names: Samuel
     family-names: Nastase
     website: https://snastase.github.io/
@@ -1312,6 +1333,10 @@ authors:
   - given-names: Vittorio
     family-names: Iacovella
     orcid: https://orcid.org/0000-0002-0853-1573
+  - given-names: Viviana
+    family-names: Siless
+    affiliation: Business School, Universidad Torcuato di Tella
+    email: [email protected]
   - given-names: Vladimir
     family-names: Litvak
     orcid: https://orcid.org/0000-0001-8535-7452

CODEOWNERS

@@ -16,5 +16,5 @@
 /src/derivatives/diffusion-derivatives.md @francopestilli @oesteban @Lestropie
 
 # The schema
-/src/schema/ @tsalo @erdalkaraca
-/tools/schemacode/ @tsalo @erdalkaraca
+/src/schema/ @erdalkaraca
+/tools/schemacode/ @erdalkaraca

mkdocs.yml

@@ -1,4 +1,4 @@
-site_name: Brain Imaging Data Structure 1.10.0-dev
+site_name: Brain Imaging Data Structure 1.10.1-dev
 site_url: https://bids-specification.readthedocs.io/en/stable/
 repo_url: https://github.com/bids-standard/bids-specification
 nav: