Line up text and yaml for probabilistic segmentations

Author: mguaypaq

src/derivatives/imaging.md

@@ -336,7 +336,8 @@ Template:
     sub-<label>/
         [ses-<label>/]
             func|anat|dwi/
-                <source_entities>[_space-<space>][_seg-<label>][_res-<label>][_den-<label>][_label-<label>][_desc-<label>]_probseg.nii.gz
+                <source_entities>[_space-<space>][_seg-<label>][_res-<label>][_label-<label>][_desc-<label>]_probseg.json
+                <source_entities>[_space-<space>][_seg-<label>][_res-<label>][_label-<label>][_desc-<label>]_probseg.nii[.gz]
 ```
 
 Example:

src/schema/rules/files/deriv/imaging.yaml

@@ -162,8 +162,8 @@ anat_parametric_probabilistic_segmentation:
   entities:
     $ref: rules.files.raw.anat.parametric.entities
     space: optional
+    segmentation: optional
     resolution: optional
-    density: optional
     label: optional
     description: optional
 
@@ -174,8 +174,8 @@ anat_nonparametric_probabilistic_segmentation:
   entities:
     $ref: rules.files.raw.anat.nonparametric.entities
     space: optional
+    segmentation: optional
     resolution: optional
-    density: optional
     label: optional
     description: optional
 
@@ -186,8 +186,8 @@ func_probabilistic_segmentation:
   entities:
     $ref: rules.files.raw.func.func.entities
     space: optional
+    segmentation: optional
     resolution: optional
-    density: optional
     label: optional
     description: optional
 
@@ -198,10 +198,14 @@ dwi_probabilistic_segmentation:
   entities:
     $ref: rules.files.raw.dwi.dwi.entities
     space: optional
+    segmentation: optional
     resolution: optional
-    density: optional
     label: optional
     description: optional
+  extensions:
+    - .nii.gz
+    - .nii
+    - .json
 
 anat_parametic_discrete_surface:
   $ref: rules.files.raw.anat.parametric