Merge branch 'bids-standard:master' into dev

Author: markmikkelsen

.all-contributorsrc

@@ -38,6 +38,7 @@ jobs:
               uvx linkchecker -t 1 --check-extern \
                 --ignore-url 'file:///.*' \
                 --ignore-url 'https://bids-specification.readthedocs.io/en/stable/.*' \
+                --ignore-url "https://bids-specification.readthedocs.io/en/v${CIRCLE_BRANCH#rel/}/" \
                 --ignore-url 'https://doi.org/.*' \
                 --ignore-url 'https://fonts.gstatic.com' \
                 --ignore-url 'https://github.com/[^/]*' \

.circleci/config.yml

@@ -1,2 +1,4 @@
+# 2025-08-27 00:06:56 -0400 - [email protected] - sty: ruff format [ignore-rev]
+14d99ce796bd40ea97d1c11fa25d31e710b51030
 # 2022-08-19 12:59:40 -0400 - [email protected] - [git-blame-ignore-rev] prettified schema files.
 aaccb5ffc10e7f9460bbe9eb8c246872de167543

.git-blame-ignore-revs

@@ -13,7 +13,7 @@ jobs:
     github_changelog_generator:
         runs-on: ubuntu-latest
         steps:
-        - uses: actions/checkout@v4
+        - uses: actions/checkout@v5
         - name: Set up Ruby
           uses: ruby/setup-ruby@v1
           with:
@@ -62,9 +62,9 @@ jobs:
         needs: github_changelog_generator
         runs-on: ubuntu-latest
         steps:
-        - uses: actions/checkout@v4
+        - uses: actions/checkout@v5
         - name: Download previously build changelog
-          uses: actions/download-artifact@v4
+          uses: actions/download-artifact@v5
           with:
             name: changelog_pre_lint
             path: ~/changelog_build
@@ -108,9 +108,9 @@ jobs:
         if: contains(github.event.head_commit.message, '[build changelog]')
         runs-on: ubuntu-latest
         steps:
-        - uses: actions/checkout@v4
+        - uses: actions/checkout@v5
         - name: Download previously build changelog
-          uses: actions/download-artifact@v4
+          uses: actions/download-artifact@v5
           with:
             name: changelog_post_lint
             path: ~/changelog_build

.github/workflows/changelog_generator.yml

@@ -28,7 +28,7 @@ jobs:
   publish:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0
           filter: "blob:none"

.github/workflows/publish_schema.yml

@@ -29,7 +29,7 @@ jobs:
       attestations: write
       id-token: write
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0
       - name: Install the latest version of uv
@@ -62,7 +62,7 @@ jobs:
             python-version: 3.13
     name: ${{ matrix.os }} with Python ${{ matrix.python-version }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
 
       - name: Set up Python ${{ matrix.python-version }} (uv)
         uses: astral-sh/setup-uv@v6
@@ -74,7 +74,7 @@ jobs:
         run: python -c "import sys; print(sys.version)"
 
       - name: "Fetch packages"
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v5
         with:
           name: Packages
           path: dist
@@ -112,7 +112,7 @@ jobs:
 
     steps:
       - name: Download packages built by build-and-inspect-python-package
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v5
         with:
           name: Packages
           path: dist
@@ -131,7 +131,7 @@ jobs:
     runs-on: ubuntu-latest
     name: Validate schema
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
 
       - name: Set Up Python environment
         uses: actions/setup-python@v5
@@ -162,10 +162,10 @@ jobs:
     needs: [test, validate_schema]
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Download artifacts
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v5
 
       - name: Upload to CodeCov
         uses: codecov/codecov-action@v5

.github/workflows/schemacode_ci.yml

@@ -17,7 +17,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
       - name: Install dependencies
         run: |
           sudo apt update && sudo apt install -y shellcheck

.github/workflows/shellcheck.yml

@@ -16,14 +16,14 @@ jobs:
   codespell:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: codespell-project/actions-codespell@master
 
   # Markdown formatting
   remark:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: actions/setup-node@v4
         with:
           node-version: 22
@@ -36,7 +36,7 @@ jobs:
   yamllint:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: astral-sh/setup-uv@v6
       - name: Lint yml files in src/schema
         run: uvx yamllint -f standard src/schema/ -c .yamllint.yml
@@ -45,7 +45,7 @@ jobs:
   python-style:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: astral-sh/setup-uv@v6
       - run: uvx ruff format --diff
       - run: uvx ruff check
@@ -54,7 +54,7 @@ jobs:
   latin-phrases:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: astral-sh/setup-uv@v6
       - name: Check for Latin phrases
         run: uv run tools/no-bad-latin.py
@@ -63,7 +63,9 @@ jobs:
   validate_cff:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: astral-sh/setup-uv@v6
       - name: Validate CITATION.cff
         run: uvx cffconvert --validate
+      - name: Check for Zenodo compatibility
+        run: uv run tools/validate_citation.py

.github/workflows/validation.yml

@@ -6,6 +6,8 @@ site/
 venvs
 .vscode/
 
+.~lock*
+
 pdf_build_src/bids-spec.pdf
 pdf_build_src/bids-spec_pandoc_log.json
 pdf_build_src/src_copy

.gitignore

@@ -25,6 +25,8 @@ Remi Gau <[email protected]> <[email protected]>
 Horea Christian <[email protected]>
 Horea Christian <[email protected]> <[email protected]>
 
+Yaroslav O. Halchenko <[email protected]>
+
 Franco Pestilli <[email protected]>
 Franco Pestilli <[email protected]> <[email protected]>