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1 | | -# Supplementary data 1 from Mello et al. 2019, bioRxiv and Nature Ecology and Evolution |
| 1 | +# mello-et-al-2019-SD1 |
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3 | | -Ecological Synthesis Lab (SintECO): https://marcomellolab.wordpress.com |
| 3 | +Supplementary data 1 of the preprint [Mello et al. (2018, bioRxiv)](https://doi.org/10.1101/452565), later formally published as [Mello et al. (2019, Nature Ecology and Evolution)](https://doi.org/10.1038/s41559-019-1002-3). |
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5 | | -Authors: Marco A. R. Mello, Gabriel M. Felix, Rafael B. P. Pinheiro, Renata L. Muylaert, Cullen Geiselman, Sharlene E. Santana, Marco Tschapka, Nastaran Lotfi, Francisco A. Rodrigues & Richard D. Stevens |
| 5 | +[Ecological Synthesis Lab](https://marcomellolab.wordpress.com) (SintECO). |
6 | 6 |
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7 | | -E-mail: marmello@gmail.com |
| 7 | +Authors: Marco A. R. Mello, Gabriel M. Felix, Rafael B. P. Pinheiro, Renata L. Muylaert, Cullen Geiselman, Sharlene E. Santana, Marco Tschapka, Nastaran Lotfi, Francisco A. Rodrigues & Richard D. Stevens. |
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9 | | -How to cite: Mello et al. 2019. Assembly rules of a continent-wide multilayer network. Nature Ecology and Evolution, DOI: https://dx.doi.org/10.1038/s41559-019-1002-3. Supplementary Data 1. |
10 | | - |
11 | | -Updated on August 5th, 2019 (English version). |
| 9 | +E-mail: marmello@usp.br. |
12 | 10 |
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| 11 | +Created on October 16th, 2018 (English version). |
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14 | 13 | <a href="https://doi.org/10.5281/zenodo.3360862"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.3360862.svg" alt="DOI"></a> |
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16 | | - |
17 | 15 | Run in R version 3.6.0 (2019-04-26) -- "Planting of a Tree" |
18 | 16 |
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19 | 17 | Disclaimer: You may use this script freely for non-comercial purposes at your own risk. We assume no responsibility or liability for the use of this software, convey no license or title under any patent, copyright, or mask work right to the product. We reserve the right to make changes in the software without notification. We also make no representation or warranty that such application will be suitable for the specified use without further testing or modification. If this script helps you produce any academic work (paper, book, chapter, dissertation etc.), please acknowledge the authors and cite the source. |
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| 19 | + |
| 20 | +## Feedback |
| 21 | + |
| 22 | +If you have any questions, suggestions, or corrections, please feel free to open an [issue](https://github.com/marmello77/mello-et-al-2018-SD1/issues) or send a [pull request](https://github.com/marmello77/mello-et-al-2018-SD1/pulls). |
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| 24 | + |
| 25 | +## Acknowledgments |
| 26 | + |
| 27 | +We are deeply grateful to all naturalists who carried out fieldwork in the Neotropics over several decades and collected the information used to build our dataset. Judith Bronstein gave invaluable suggestions for an early draft of this study. Paulo Guimarães Jr., Tiago Quental, and Thomas Lewinsohn discussed with us the assembly rules of interaction networks. Pedro Jordano, Carsten Dormann, and Katherine Ognyanova gave us invaluable tips on how to analyze and draw networks in R. Mark White and the StackOverflow community helped us build the [model used in the latent variable analysis](https://stackoverflow.com/questions/44114501/model-identification-in-lavaan-for-r). MARM was funded by the São Paulo Research Foundation (FAPESP: 2018/20695-7), Research Dean of the University of São Paulo (PRP-USP: 18.1.660.41.7), Brazilian Council for Scientific and Technological Development (CNPq: 302700/2016-1), Minas Gerais Research Foundation (FAPEMIG: PPM-00324-15), and Alexander von Humboldt Foundation (AvH: 3.4-8151/15037). GMF and RBPP received scholarships from the Brazilian Coordination for the Improvement of Higher Education Personnel (CAPES) and CNPq through the Graduate School in Ecology of the Federal University of Minas Gerais (ECMVS). RLM received scholarships from FAPESP (2015/17739-4, 2017/01816-0). SES was supported by the National Science Foundation (NSF-1456375). NL received a scholarship from CNPq and The World Academy of Sciences (312518/2015-3). FAR acknowledges CNPq (307974/2013-8) and FAPESP (17/50144-0 and 16/25682-5) for the financial support given for his research, and the Leverhulme Trust for the Visiting Professorship provided. |
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