Separate imports

Author: Stefan Hahmann

src/main/java/org/mastodon/mamut/util/ApposeProcess.java

@@ -59,17 +59,6 @@ protected ApposeProcess() throws IOException
 		if ( logger.isInfoEnabled() )
 			logger.info( "Set up environment. Path: {}. Time elapsed: {}", environment.base(), stopWatch.formatSplitTime() );
 		this.pythonWorker = environment.python();
-		Service.Task doImports = this.pythonWorker.task( generateImportStatements(), "main" );
-		doImports.listen( getTaskListener( stopWatch, doImports ) );
-		try
-		{
-			doImports.waitFor();
-		}
-		catch ( InterruptedException e )
-		{
-			logger.error( "Import task interrupted: {}", e.getMessage(), e );
-			Thread.currentThread().interrupt();
-		}
 		// this.pythonWorker.debug( logger::info );
 		this.inputs = new HashMap<>();
 	}
@@ -198,6 +187,18 @@ protected static boolean isPythonTaskInterrupted( final Service.Task task )
 
 	protected Service.Task runScript() throws IOException
 	{
+		Service.Task doImports = pythonWorker.task( generateImportStatements(), "main" );
+		doImports.listen( getTaskListener( stopWatch, doImports ) );
+		try
+		{
+			doImports.waitFor();
+		}
+		catch ( InterruptedException e )
+		{
+			logger.error( "Import task interrupted: {}", e.getMessage(), e );
+			Thread.currentThread().interrupt();
+		}
+
 		String script = generateScript();
 		Service.Task task = pythonWorker.task( script, inputs, null );
 		stopWatch.split();