mastodon-deep-lineage-0.5.3

What's Changed

• Fix logger by @stefanhahmann in #156

Full Changelog: mastodon-deep-lineage-0.5.2...mastodon-deep-lineage-0.5.3

mastodon-deep-lineage-0.5.2

What's Changed

• Add repo for tsne artefact by @stefanhahmann in #155

Full Changelog: mastodon-deep-lineage-0.5.0...mastodon-deep-lineage-0.5.2

mastodon-deep-lineage-0.5.0

What's Changed

• Enable Detection with Cellpose3, Cellpose4 and StarDist by @stefanhahmann in #132
• Modify label image utils by @stefanhahmann in #131
• Use appose-java 0.9.0 and appose-python 0.7.2 by @stefanhahmann in #133
• Region of Interest and Channel Priority by @stefanhahmann in #135
• Search for Lineage motifs by @stefanhahmann in #136
• Search for Lineage motifs accross multiple projects by @stefanhahmann in #139
• Update pom to beta 35 and scijava 42 by @stefanhahmann in #141
• Add Linking using Trackastra Linker by @stefanhahmann in #142
• Add Cancelation support for deep learning detectors by @stefanhahmann in #144
• Fix appose processes hanging on windows by @stefanhahmann in #145
• Add Appose Python Environment Manager UI by @stefanhahmann in #146
• Re-use already loaded python environments by @stefanhahmann in #149
• Fix trackastra and stardist get stuck on windows by @stefanhahmann in #151
• Enable Stardist 3D with GPU support by @stefanhahmann in #152

Full Changelog: mastodon-deep-lineage-0.4.7...mastodon-deep-lineage-0.5.0

mastodon-deep-lineage-0.4.7

What's Changed

• Allow Umap with 1 target dimension by @stefanhahmann in #130

Full Changelog: mastodon-deep-lineage-0.4.6...mastodon-deep-lineage-0.4.7

mastodon-deep-lineage-0.4.5

• Remove length unit from BranchTimepointFeature

Full Changelog: mastodon-deep-lineage-0.4.4...mastodon-deep-lineage-0.4.5

mastodon-deep-lineage-0.4.4

What's Changed

• Add new feature BranchTimepoints by @stefanhahmann in #128
  • Allows computing of the first and the last timepoint of a branch using the feature computer. Useful for time based analysis using the branch grapher

Full Changelog: mastodon-deep-lineage-0.4.3...mastodon-deep-lineage-0.4.4

mastodon-deep-lineage-0.4.3

What's Changed

• Bugfix in import spots from label image in the case of 2D+t images: 4b80969

Full Changelog: mastodon-deep-lineage-0.4.2...mastodon-deep-lineage-0.4.3

mastodon-deep-lineage-0.4.2

What's Changed

• Bugfix in dendrogram view of lineage clustering by @stefanhahmann in #127

Full Changelog: mastodon-deep-lineage-0.4.1...mastodon-deep-lineage-0.4.2

mastodon-deep-lineage-0.4.1

What's Changed

• Prepare code to add new dimensionality reduction methods. Already added option t-sne had to be deactivated, since the library used for computation causes class path conflict with Fiji. An alternative library could not yet be added, since it requires Fiji to be run with JDK21 @stefanhahmann in #120, #125 and #126
• Switch to newly released mastodon core version 1.0.0-beta-33 by @stefanhahmann in #124

Full Changelog: mastodon-deep-lineage-0.3.4...mastodon-deep-lineage-0.4.1

mastodon-deep-lineage-0.3.4

What's Changed

• Enable Import of Spots from segmented Image data for 2D images by @stefanhahmann in #121

Full Changelog: mastodon-deep-lineage-0.3.2...mastodon-deep-lineage-0.3.4