ms2query_2/.github/workflows/CI_build_and_matix_tests.yml at main · matchms/ms2query_2 · GitHub

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name: CI build and Python-System-matrix tests

on:
  pull_request:
    types: [opened, ready_for_review, closed]
  workflow_dispatch:
    inputs:
      tag:
        description: Tag for manually running CI Build workflow
        required: False
        default: ''

jobs:
  first_check:
    name: first code check / python-3.13 / ubuntu-latest
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.13'
      - name: Python info
        run: |
          which python
          python --version
      - name: Build package and create dev environment
        run: |
          python -m pip install --upgrade pip poetry
          poetry config virtualenvs.create false
          poetry install
      - name: Show pip list
        run: |
          pip list
      - name: Test with coverage
        run: |
          poetry run pytest --cov --cov-report term --cov-report xml --junitxml=xunit-result.xml
      - name: Correct coverage paths
        run: sed -i "s+$PWD/++g" coverage.xml
      - name: Run ruff linter
        run: ruff check --output-format=github


  build_pypi:
    name: Test pypi build
    runs-on: ubuntu-latest
    needs: first_check
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python 3.13
        uses: actions/setup-python@v5
        with:
          python-version: '3.13'
      - name: Python info
        run: |
          which python
          python --version
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip poetry
          poetry config virtualenvs.create false
      - name: Build package
        run: |
          poetry build
      - name: Test package
        run: |
          poetry install --only dev
          python -m twine check dist/*
      - name: Show pip list
        run: |
          pip list
      - name: Install development dependencies
        run: |
          poetry install
      - name: Show pip list again
        run: |
          pip list
      - name: Run tests
        run: |
          poetry run pytest
      - name: Show environment variables
        shell: bash -l {0}
        run: |
          env | sort

  test_dev:
    name: test dev environment / python-${{ matrix.python-version }} / ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    needs: first_check
    strategy:
      fail-fast: false
      matrix:
        os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
        python-version: ['3.10', '3.11', '3.12', '3.13']
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Python info
        run: |
          which python
          python --version
      - name: Install dependencies (includinv dev + chemistry)
        run: |
          python -m pip install --upgrade pip poetry
          poetry config virtualenvs.create false
          poetry install
      - name: Show pip list
        run: |
          pip list
      - name: Run tests
        run: |
          poetry run pytest