Automated dependency upgrades (#1918)

* update dependencies for mpcontribs-api (ubuntu-latest/py3.10)

* update dependencies for mpcontribs-api (ubuntu-latest/py3.11)

* update dependencies for mpcontribs-client (ubuntu-latest/py3.10)

* update dependencies for mpcontribs-client (ubuntu-latest/py3.11)

* update dependencies for mpcontribs-kernel-gateway (ubuntu-latest/py3.10)

* update dependencies for mpcontribs-kernel-gateway (ubuntu-latest/py3.11)

* update dependencies for mpcontribs-portal (ubuntu-latest/py3.10)

* update dependencies for mpcontribs-portal (ubuntu-latest/py3.11)

---------

Co-authored-by: github-actions <github-actions@github.com>

Author: tschaume

mpcontribs-api/requirements/ubuntu-latest_py3.10.txt

@@ -38,9 +38,9 @@ blinker==1.9.0
     # via mpcontribs-api (setup.py)
 boltons==25.0.0
     # via mpcontribs-api (setup.py)
-boto3==1.38.6
+boto3==1.38.21
     # via flask-mongorest-mpcontribs
-botocore==1.38.6
+botocore==1.38.21
     # via
     #   boto3
     #   s3transfer
@@ -54,9 +54,9 @@ cffi==1.17.1
     # via
     #   argon2-cffi-bindings
     #   cryptography
-charset-normalizer==3.4.1
+charset-normalizer==3.4.2
     # via requests
-click==8.1.8
+click==8.2.1
     # via
     #   flask
     #   rq
@@ -68,15 +68,15 @@ cramjam==2.10.0
     # via python-snappy
 crontab==1.0.4
     # via rq-scheduler
-cryptography==44.0.2
+cryptography==45.0.2
     # via pyopenssl
 css-html-js-minify==2.5.5
     # via mpcontribs-api (setup.py)
 cycler==0.12.1
     # via matplotlib
 dateparser==1.2.1
     # via mpcontribs-api (setup.py)
-ddtrace==2.21.6
+ddtrace==2.21.8
     # via mpcontribs-api (setup.py)
 debugpy==1.8.14
     # via ipykernel
@@ -94,7 +94,7 @@ entrypoints==0.4
     # via jupyter-client
 envier==0.5.2
     # via ddtrace
-exceptiongroup==1.2.2
+exceptiongroup==1.3.0
     # via
     #   anyio
     #   ipython
@@ -134,15 +134,15 @@ flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.57.0
+fonttools==4.58.0
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
 freezegun==1.5.1
     # via rq-scheduler
-gevent==25.4.2
+gevent==25.5.1
     # via gunicorn
-greenlet==3.2.1
+greenlet==3.2.2
     # via gevent
 gunicorn[gevent]==23.0.0
     # via mpcontribs-api (setup.py)
@@ -180,7 +180,7 @@ jmespath==1.0.1
     # via
     #   boto3
     #   botocore
-joblib==1.4.2
+joblib==1.5.0
     # via pymatgen
 json2html==1.3.0
     # via mpcontribs-api (setup.py)
@@ -210,7 +210,7 @@ jupyter-core==5.7.2
     #   notebook
 jupyter-events==0.12.0
     # via jupyter-server
-jupyter-server==2.15.0
+jupyter-server==2.16.0
     # via notebook-shim
 jupyter-server-terminals==0.5.3
     # via jupyter-server
@@ -230,7 +230,7 @@ marshmallow==3.26.1
     #   mpcontribs-api (setup.py)
 marshmallow-mongoengine==0.31.2
     # via flask-mongorest-mpcontribs
-matplotlib==3.10.1
+matplotlib==3.10.3
     # via pymatgen
 matplotlib-inline==0.1.7
     # via
@@ -253,9 +253,9 @@ more-itertools==10.7.0
     # via mpcontribs-api (setup.py)
 mpmath==1.3.0
     # via sympy
-narwhals==1.37.1
+narwhals==1.40.0
     # via plotly
-nbclassic==1.3.0
+nbclassic==1.3.1
     # via notebook
 nbclient==0.10.2
     # via nbconvert
@@ -282,7 +282,7 @@ notebook==6.5.7
     # via mpcontribs-api (setup.py)
 notebook-shim==0.2.4
     # via nbclassic
-numpy==2.2.5
+numpy==2.2.6
     # via
     #   contourpy
     #   matplotlib
@@ -292,7 +292,7 @@ numpy==2.2.5
     #   pymatgen
     #   scipy
     #   spglib
-opentelemetry-api==1.32.1
+opentelemetry-api==1.33.1
     # via ddtrace
 orjson==3.10.18
     # via flask-mongorest-mpcontribs
@@ -322,19 +322,19 @@ pillow==11.2.1
     # via matplotlib
 pint==0.24.4
     # via mpcontribs-api (setup.py)
-platformdirs==4.3.7
+platformdirs==4.3.8
     # via
     #   jupyter-core
     #   pint
-plotly==6.0.1
+plotly==6.1.1
     # via pymatgen
-prometheus-client==0.21.1
+prometheus-client==0.22.0
     # via
     #   jupyter-server
     #   notebook
 prompt-toolkit==3.0.51
     # via ipython
-protobuf==6.30.2
+protobuf==6.31.0
     # via ddtrace
 psutil==7.0.0
     # via ipykernel
@@ -352,13 +352,13 @@ pygments==2.19.1
     # via
     #   ipython
     #   nbconvert
-pymatgen==2025.4.24
+pymatgen==2025.5.2
     # via mpcontribs-api (setup.py)
-pymongo==4.12.1
+pymongo==4.13.0
     # via
     #   flask-mongorest-mpcontribs
     #   mongoengine
-pyopenssl==25.0.0
+pyopenssl==25.1.0
     # via mpcontribs-api (setup.py)
 pyparsing==3.2.3
     # via
@@ -395,7 +395,7 @@ pyzmq==26.4.0
     #   jupyter-client
     #   jupyter-server
     #   notebook
-redis==6.0.0
+redis==6.1.0
     # via
     #   flask-rq2
     #   flask-sse
@@ -419,11 +419,11 @@ rfc3986-validator==0.1.1
     # via
     #   jsonschema
     #   jupyter-events
-rpds-py==0.24.0
+rpds-py==0.25.1
     # via
     #   jsonschema
     #   referencing
-rq==2.3.2
+rq==2.3.3
     # via
     #   flask-rq2
     #   rq-scheduler
@@ -437,7 +437,7 @@ ruamel-yaml-clib==0.2.12
     # via ruamel-yaml
 s3transfer==0.12.0
     # via boto3
-scipy==1.15.2
+scipy==1.15.3
     # via pymatgen
 semantic-version==2.10.0
     # via mpcontribs-api (setup.py)
@@ -475,7 +475,7 @@ terminado==0.18.1
     #   notebook
 tinycss2==1.4.0
     # via bleach
-tornado==6.4.2
+tornado==6.5.1
     # via
     #   ipykernel
     #   jupyter-client
@@ -498,13 +498,14 @@ traitlets==5.14.3
     #   nbconvert
     #   nbformat
     #   notebook
-types-python-dateutil==2.9.0.20241206
+types-python-dateutil==2.9.0.20250516
     # via arrow
 typing-extensions==4.13.2
     # via
     #   anyio
     #   beautifulsoup4
     #   ddtrace
+    #   exceptiongroup
     #   flexcache
     #   flexparser
     #   ipython