working on tests

Author: matthiaskoenig

src/sbmlsim/examples/example_model_change.py

@@ -10,7 +10,7 @@
 from sbmlsim.plot.serialization_matplotlib import plt
 from sbmlsim.resources import REPRESSILATOR_SBML
 from sbmlsim.simulation import Timecourse, TimecourseSim
-from sbmlsim.simulator.rr_simulator_serial import SimulatorSerialRR
+from sbmlsim.simulator import SimulatorSerial
 from sbmlsim.result import XResult
 
 
@@ -59,7 +59,7 @@ def run_model_change_example1():
 
 def run_model_clamp1():
     """Using Timecourse simulations for clamps."""
-    simulator = SimulatorSerialRR.from_sbml(REPRESSILATOR_SBML)
+    simulator = SimulatorSerial.from_sbml(REPRESSILATOR_SBML)
 
     # setting a species as boundary condition
     tcsim = TimecourseSim(
@@ -114,7 +114,7 @@ def plot_result(xres: XResult, title: str = None) -> None:
         plt.show()
 
     # reference simulation
-    simulator = SimulatorSerialRR.from_sbml(REPRESSILATOR_SBML)
+    simulator = SimulatorSerial.from_sbml(REPRESSILATOR_SBML)
     tcsim = TimecourseSim(
         [
             Timecourse(start=0, end=220, steps=300, changes={"X": 10}),

src/sbmlsim/examples/example_units.py

@@ -8,14 +8,14 @@
 
 from sbmlsim.resources import DEMO_SBML
 from sbmlsim.simulation import Dimension, ScanSim, Timecourse, TimecourseSim
-from sbmlsim.simulator.rr_simulator_serial import SimulatorSerialRR
+from sbmlsim.simulator import SimulatorSerial
 from sbmlsim.units import UnitsInformation
 from sbmlsim.result import XResult
 
 
 def run_demo_example():
     """Run various timecourses."""
-    simulator = SimulatorSerialRR.from_sbml(DEMO_SBML)
+    simulator = SimulatorSerial.from_sbml(DEMO_SBML)
 
     # units information
     uinfo = UnitsInformation.from_sbml(DEMO_SBML)

src/sbmlsim/interpolation/interpolation_example.py

@@ -1,6 +1,5 @@
 """Exmpample demonstrating the interpolation of data."""
-import os
-import shutil
+
 import tempfile
 from pathlib import Path
 
@@ -10,7 +9,7 @@
 from matplotlib.pyplot import Axes, Figure
 
 from pymetadata import log
-from sbmlutils.manipulation import interpolation as ip
+from sbmlsim.interpolation import interpolation as ip
 
 
 logger = log.get_logger(__name__)

tests/interpolation/test_interpolation.py

@@ -6,8 +6,8 @@
 import pytest
 import roadrunner
 
-from sbmlutils.manipulation import interpolation as ip
-from sbmlutils.manipulation.interpolation_example import interpolation_example
+from sbmlsim.interpolation import interpolation as ip
+from sbmlsim.interpolation.interpolation_example import interpolation_example
 
 
 x = [0.0, 1.0, 2.0, 3.0, 4.0, 5.0]