updates for python 3.14

Author: matthiaskoenig

.python-version

@@ -1 +1 @@
-3.13
+3.14

RELEASE.md

@@ -10,7 +10,7 @@
 * `git push`
 * test installation in virtualenv from pypi
 ```bash
-uv venv --python 3.13
+uv venv --python 3.14
 uv pip install sbmlsim
 ```
 
@@ -20,16 +20,13 @@ uv pip install sbmlsim
 uv sync
 # install dev dependencies
 uv pip install -r pyproject.toml --extra dev
-```
-
-## Setup tox testing
-See information on https://github.com/tox-dev/tox-uv
-```bash
 uv tool install tox --with tox-uv
 ```
+
+## Testing with tox
 Run single tox target
 ```bash
-tox r -e py312
+tox r -e py314
 ```
 Run all tests in parallel
 ```bash

pyproject.toml

@@ -21,6 +21,7 @@ classifiers = [
 	"Operating System :: OS Independent",
 	"Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
 	"Programming Language :: Python :: Implementation :: CPython",
 	"Topic :: Scientific/Engineering",
 	"Topic :: Scientific/Engineering :: Bio-Informatics",
@@ -32,12 +33,12 @@ keywords = [
     "SBML",
 ]
 dependencies = [
-    "sbmlutils>=0.8.7",
-    "numpy>=2.2",
-    "libroadrunner>=2.8.0",
-    "scipy>=1.12.0",
-    "pint>=0.23",
+    "sbmlutils>=0.9.5",
+    "pkdb-analysis>=0.3.1",
     # from sbmlutils (no version pin)
+    "pymetadata",
+    "numpy",
+    "libroadrunner",
     "python-libsbml",
     "rich",
     "pint",
@@ -46,12 +47,13 @@ dependencies = [
     "scipy",
     "sympy",
     "matplotlib",
+    "pydantic",
     # dependencies
+    "dill>=0.4.0",
     "SAlib>=1.5.2",
-    "petab>=0.5.0",
-    "pydantic>=2.12.4",
-    "tables>=3.10.2",
-    "xarray>=2025.1.2",
+    "petab>=0.7.0",
+    # "tables>=3.10.2",
+    "xarray>=2025.11.0",
     "bottleneck>=1.4.2",
     "psutil>=6.1.1",
     "setproctitle>=1.3.4",
@@ -60,9 +62,8 @@ dependencies = [
     "seaborn>=0.13.2",
     "xmltodict>=0.14.2",
     "pyDOE>=0.3.8",
-    "python-libsedml>=2.0.32",
-    "python-libnuml>=1.1.6",
-    "pkdb-analysis>=0.3.1",
+    "python-libsedml>=2.0.33",
+    "python-libnuml>=1.1.7",
 ]
 
 [project.optional-dependencies]