AHDF5 Unit Tests #17
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| name: AHDF5 Unit Tests | |
| on: | |
| # Run on pushes to main | |
| push: | |
| branches: | |
| - main | |
| # Run on pull requests to main | |
| pull_request: | |
| branches: | |
| - main | |
| # Run daily at 9 AM UTC | |
| schedule: | |
| - cron: '0 9 * * *' | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.12'] #['3.10', '3.11', '3.12'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Restore HDF5 cache | |
| id: cache-hdf5 | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: ~/hdf5-install | |
| key: hdf5-2.0.0-zlib-ubuntu-${{ runner.os }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Build HDF5 2.0.0 with tools | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cmake zlib1g-dev | |
| wget https://github.com/HDFGroup/hdf5/releases/download/2.0.0/hdf5.tar.gz | |
| tar -xzf hdf5.tar.gz | |
| cd hdf5-2.0.0 | |
| mkdir build && cd build | |
| cmake -DHDF5_BUILD_TOOLS=ON \ | |
| -DHDF5_ENABLE_Z_LIB_SUPPORT=ON \ | |
| -DCMAKE_INSTALL_PREFIX=$HOME/hdf5-install \ | |
| .. | |
| echo "=== CMake Configuration Summary ===" | |
| grep -i "zlib" CMakeCache.txt || echo "No zlib found in CMakeCache.txt" | |
| make -j$(nproc) | |
| make install | |
| echo "=== Verify tools were built ===" | |
| ls -lh $HOME/hdf5-install/bin/ | |
| - name: Install HDF5 to system | |
| run: | | |
| sudo cp -r $HOME/hdf5-install/* /usr/local/ | |
| sudo ldconfig | |
| echo "=== h5repack version ===" | |
| h5repack --version || echo "h5repack not found" | |
| echo "=== Available HDF5 tools ===" | |
| ls -lh /usr/local/bin/h5* || echo "No h5 tools found" | |
| - name: Run h5py MCP tests | |
| run: | | |
| # Skip filter tests due to inconsistent h5repack filter availability in GitHub Actions. | |
| # h5repack command-line tools are not reliably available with pip-installed h5py, | |
| # and system HDF5 installations may not have consistent filter support (e.g., deflate/gzip). | |
| pytest -k "not TestApplyFilterDataset" | |
| - name: Save HDF5 cache | |
| uses: actions/cache/save@v4 | |
| if: always() && steps.cache-hdf5.outputs.cache-hit != 'true' | |
| with: | |
| path: ~/hdf5-install | |
| key: hdf5-2.0.0-zlib-ubuntu-${{ runner.os }} |