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bare.xml
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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" sboTerm="SBO:0000624" level="3" version="1" fbc:required="false">
<model metaid="meta_bare" id="bare" name="Empty Demo Model" fbc:strict="true">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_bare">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="https://identifiers.org/taxonomy/36329"/>
<rdf:li rdf:resource="https://identifiers.org/insdc.gca/GCA_000002765.2"/>
<rdf:li rdf:resource="https://identifiers.org/genedb/Plasmodium_falciparum_3D7"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" exponent="1" scale="-3" multiplier="1"/>
<unit kind="gram" exponent="-1" scale="0" multiplier="1"/>
<unit kind="second" exponent="-1" scale="0" multiplier="3600"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="c" constant="true"/>
</listOfCompartments>
<listOfSpecies>
<species metaid="meta_M_1ddecg3p_c" sboTerm="SBO:0000247" id="M_1ddecg3p_c" name="1-dodecanoyl-sn-glycerol 3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H29O7P">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_M_1ddecg3p_c">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="https://identifiers.org/inchi/InChI=1S/C15H31O7P/c1-2-3-4-5-6-7-8-9-10-11-15(17)21-12-14(16)13-22-23(18,19)20/h14,16H,2-13H2,1H3,(H2,18,19,20)/p-2/t14-/m1/s1"/>
<rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1ddecg3p"/>
<rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:62840"/>
<rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB62319"/>
<rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd15325"/>
<rdf:li rdf:resource="https://identifiers.org/metacyc.compound/CPD0-2200"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species id="M_adp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="M_h_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="M_fdp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="M_atp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="M_f6p_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
</listOfSpecies>
<listOfParameters>
<parameter sboTerm="SBO:0000626" id="cobra_default_lb" value="-1000" constant="true"/>
<parameter sboTerm="SBO:0000626" id="cobra_default_ub" value="1000" constant="true"/>
<parameter sboTerm="SBO:0000626" id="cobra_0_bound" value="0" constant="true"/>
<parameter sboTerm="SBO:0000625" id="minus_inf" value="-INF" constant="true"/>
<parameter sboTerm="SBO:0000625" id="plus_inf" value="INF" constant="true"/>
</listOfParameters>
<listOfReactions>
<reaction metaid="meta_R_PFK" id="R_PFK" name="phosphofructokinase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_R_PFK">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PFK"/>
<rdf:li rdf:resource="https://identifiers.org/rhea/16109"/>
<rdf:li rdf:resource="https://identifiers.org/rhea/16110"/>
<rdf:li rdf:resource="https://identifiers.org/rhea/16111"/>
<rdf:li rdf:resource="https://identifiers.org/rhea/16112"/>
<rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
<listOfReactants>
<speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:or>
<fbc:geneProductRef fbc:geneProduct="G_PF3D7_1128300"/>
<fbc:geneProductRef fbc:geneProduct="G_PF3D7_0915400"/>
</fbc:or>
</fbc:geneProductAssociation>
</reaction>
</listOfReactions>
<fbc:listOfObjectives fbc:activeObjective="obj">
<fbc:objective fbc:id="obj" fbc:type="maximize"/>
</fbc:listOfObjectives>
<fbc:listOfGeneProducts>
<fbc:geneProduct metaid="meta_G_PF3D7_1128300" fbc:id="G_PF3D7_1128300" fbc:name="6-phosphofructokinase" fbc:label="G_PF3D7_1128300">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<p>Location: Chromosome: 11; NC_037282.1 (1098167..1103555, complement)</p>
</html>
</notes>
<annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#meta_G_PF3D7_1128300">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="https://identifiers.org/refseq/NC_037282.1"/>
<rdf:li rdf:resource="https://identifiers.org/ncbigene/810841"/>
<rdf:li rdf:resource="https://identifiers.org/ncbiprotein/XP_001347965.1"/>
</rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</fbc:geneProduct>
<fbc:geneProduct fbc:id="G_PF3D7_0915400" fbc:name="G_PF3D7_0915400" fbc:label="G_PF3D7_0915400"/>
</fbc:listOfGeneProducts>
</model>
</sbml>