From 071f899c1ab361682864d158bacdb42797ce4763 Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Wed, 5 Feb 2025 15:56:52 -0600 Subject: [PATCH 001/106] Update the csv files with examples and update pages to contain overviews and examples --- .gitignore | 4 +- README.md | 93 +++++++++++++++++-- docs/assets/custom.css | 10 ++ docs/home/tutorial.md | 43 +++++++++ docs/model/DataDSP.md | 30 ++++++ docs/model/dataset.md | 32 +++++++ docs/model/education.md | 31 +++++++ docs/model/file.md | 34 +++++++ docs/model/grant.md | 37 ++++++++ docs/model/person.md | 36 +++++++ docs/model/publication.md | 36 +++++++ docs/model/study.md | 32 +++++++ docs/model/tool.md | 33 +++++++ docs/valid_values/file.md | 2 +- docs/valid_values/sharingPlans.md | 2 +- mkdocs.yml | 7 +- modules/dataset/annotationProperty.csv | 30 +++--- modules/dataset/template.csv | 15 +++ modules/education/annotationProperty.csv | 51 +++++----- modules/education/template.csv | 26 ++++++ modules/file/annotationProperty.csv | 39 ++++---- modules/file/template.csv | 20 ++++ modules/grant/annotationProperty.csv | 36 +++---- modules/grant/template.csv | 18 ++++ modules/person/annotationProperty.csv | 40 ++++---- modules/person/template.csv | 20 ++++ modules/publication/annotationProperty.csv | 36 +++---- modules/publication/template.csv | 18 ++++ modules/sharingPlans/annotationProperty.csv | 48 +++++----- modules/sharingPlans/template.csv | 25 +++++ modules/study/annotationProperty.csv | 28 +++--- modules/study/template.csv | 14 +++ modules/templates/10xVisiumAuxiliaryFiles.csv | 2 + modules/templates/10xVisiumRNALevel1.csv | 2 + modules/templates/10xVisiumRNALevel2.csv | 2 + modules/templates/10xVisiumRNALevel3.csv | 2 + modules/templates/10xVisiumRNALevel4.csv | 2 + ...mSpatialTranscriptomics-AuxiliaryFiles.csv | 2 + ...umSpatialTranscriptomics-RNA-seqLevel1.csv | 2 + ...umSpatialTranscriptomics-RNA-seqLevel2.csv | 2 + ...umSpatialTranscriptomics-RNA-seqLevel3.csv | 2 + ...umSpatialTranscriptomics-RNA-seqLevel4.csv | 2 + modules/templates/Biospecimen.csv | 2 + modules/templates/DataDSP.csv | 2 + modules/templates/DatasetView.csv | 2 + modules/templates/EducationalResource.csv | 2 + modules/templates/FileView.csv | 2 + modules/templates/GrantView.csv | 2 + modules/templates/ImagingChannel.csv | 2 + modules/templates/ImagingLevel1.csv | 2 + modules/templates/ImagingLevel2.csv | 2 + modules/templates/ImagingLevel3Image.csv | 2 + modules/templates/ImagingLevel3Segments.csv | 2 + modules/templates/ImagingLevel4.csv | 2 + modules/templates/Individual.csv | 2 + modules/templates/Model.csv | 2 + .../NanoStringGeoMXROISegmentAnnotation.csv | 2 + .../NanoStringGeoMxAuxiliaryFiles.csv | 2 + .../templates/NanoStringGeoMxDSPImaging.csv | 2 + .../NanoStringGeoMxDSPImagingLevel2.csv | 2 + .../templates/NanoStringGeoMxDSPLevel1.csv | 2 + .../templates/NanoStringGeoMxDSPLevel2.csv | 2 + .../templates/NanoStringGeoMxDSPLevel3.csv | 2 + modules/templates/PersonView.csv | 2 + modules/templates/ProjectView.csv | 2 + modules/templates/PublicationView.csv | 2 + modules/templates/SequencingLevel1.csv | 2 + modules/templates/SequencingLevel2.csv | 2 + modules/templates/SequencingLevel3.csv | 2 + modules/templates/Study.csv | 2 + modules/templates/ToolView.csv | 2 + modules/tool/annotationProperty.csv | 88 +++++++++--------- modules/tool/template.csv | 46 +++++++++ scripts/hooks.py | 3 +- 74 files changed, 935 insertions(+), 206 deletions(-) create mode 100644 docs/assets/custom.css create mode 100644 docs/home/tutorial.md create mode 100644 modules/dataset/template.csv create mode 100644 modules/education/template.csv create mode 100644 modules/file/template.csv create mode 100644 modules/grant/template.csv create mode 100644 modules/person/template.csv create mode 100644 modules/publication/template.csv create mode 100644 modules/sharingPlans/template.csv create mode 100644 modules/study/template.csv create mode 100644 modules/templates/10xVisiumAuxiliaryFiles.csv create mode 100644 modules/templates/10xVisiumRNALevel1.csv create mode 100644 modules/templates/10xVisiumRNALevel2.csv create mode 100644 modules/templates/10xVisiumRNALevel3.csv create mode 100644 modules/templates/10xVisiumRNALevel4.csv create mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv create mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv create mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv create mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv create mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv create mode 100644 modules/templates/Biospecimen.csv create mode 100644 modules/templates/DataDSP.csv create mode 100644 modules/templates/DatasetView.csv create mode 100644 modules/templates/EducationalResource.csv create mode 100644 modules/templates/FileView.csv create mode 100644 modules/templates/GrantView.csv create mode 100644 modules/templates/ImagingChannel.csv create mode 100644 modules/templates/ImagingLevel1.csv create mode 100644 modules/templates/ImagingLevel2.csv create mode 100644 modules/templates/ImagingLevel3Image.csv create mode 100644 modules/templates/ImagingLevel3Segments.csv create mode 100644 modules/templates/ImagingLevel4.csv create mode 100644 modules/templates/Individual.csv create mode 100644 modules/templates/Model.csv create mode 100644 modules/templates/NanoStringGeoMXROISegmentAnnotation.csv create mode 100644 modules/templates/NanoStringGeoMxAuxiliaryFiles.csv create mode 100644 modules/templates/NanoStringGeoMxDSPImaging.csv create mode 100644 modules/templates/NanoStringGeoMxDSPImagingLevel2.csv create mode 100644 modules/templates/NanoStringGeoMxDSPLevel1.csv create mode 100644 modules/templates/NanoStringGeoMxDSPLevel2.csv create mode 100644 modules/templates/NanoStringGeoMxDSPLevel3.csv create mode 100644 modules/templates/PersonView.csv create mode 100644 modules/templates/ProjectView.csv create mode 100644 modules/templates/PublicationView.csv create mode 100644 modules/templates/SequencingLevel1.csv create mode 100644 modules/templates/SequencingLevel2.csv create mode 100644 modules/templates/SequencingLevel3.csv create mode 100644 modules/templates/Study.csv create mode 100644 modules/templates/ToolView.csv create mode 100644 modules/tool/template.csv diff --git a/.gitignore b/.gitignore index 8689633f..8b34aa8a 100644 --- a/.gitignore +++ b/.gitignore @@ -2,6 +2,8 @@ .Rhistory .Rapp.history +venv/ + # Session Data files .RData @@ -46,4 +48,4 @@ great_expectations/ **/**/.DS_Store # MKDocs -scripts/__pycache__ \ No newline at end of file +scripts/__pycache__ diff --git a/README.md b/README.md index 3e09cdfe..5ea88640 100644 --- a/README.md +++ b/README.md @@ -76,12 +76,12 @@ When a new valid value needs to be added to the data model: CSV in `./modules`. If not: 2. Add the valid value in the "attribute" column of the applicable csv in - the appropriate module folder. E.g. if a new tumor type needs to be added - go to `tumorType.csv` and add the new term in the attribute column). Fill - out the rest of the columns as completely as possible, this includes the - description, the required column, parent column, source column, non-preferred - terms column, the ontology identifier, url, NCIt Code, and any notes. - Please make a note of who added it and the date. +the appropriate module folder. E.g. if a new tumor type needs to be added +go to `tumorType.csv` and add the new term in the attribute column). Fill +out the rest of the columns as completely as possible, this includes the +description, the required column, parent column, source column, non-preferred +terms column, the ontology identifier, url, NCIt Code, and any notes. +Please make a note of who added it and the date. 3. Be sure to look up any synonyms and add to the "non preferred terms" column. This will make annotating easier in the future. @@ -103,7 +103,86 @@ Thank you helping us continuously improve the MC2 Center data models! To contribute, please read our [contributing guidelines] on the docs site. +## Setup and Deployment Instructions + +To get started with this project, follow these steps: + +### 1. Install Python and Pip +Ensure you have Python installed on your system. If you don’t have it installed: + +- Visit [Python's official website](https://www.python.org/) and download the latest stable release. +- During installation, ensure you check the option to **Add Python to PATH**. + +Next, ensure that `pip` is also installed and configured. You can check by running: + +```bash +python --version +pip --version +``` + +If `pip` is missing, you can install it by downloading and running `get-pip.py` from [pip's official site](https://pip.pypa.io/en/stable/installation/). + +### 2. Set Up a Virtual Environment +Create a virtual environment to isolate dependencies for this project. + +```bash +python -m venv venv +``` + +This command creates a virtual environment named `venv` in your project directory. + +Activate the virtual environment: + +- On macOS/Linux: + ```bash + source venv/bin/activate + ``` +- On Windows: + ```cmd + venv\Scripts\activate + ``` + +Once activated, your terminal prompt should show the environment name (`venv`). + +### 3. Install Dependencies +With the virtual environment activated, install the necessary packages: + +```bash +pip install mkdocs +pip install mkdocs-material +pip install mkdocs-table-reader-plugin +``` + +### 4. Preview the Documentation Site +Run the following command to start a local server and preview the documentation site: + +```bash +mkdocs serve +``` + +Open the displayed URL (usually `http://127.0.0.1:8000/`) in your browser to view the site. + +### 5. Submit Built Pages to GitHub +To publish the documentation site on GitHub Pages, follow these steps: + +1. Build the static site files: + ```bash + mkdocs build + ``` + This will generate a `site/` directory containing the built HTML files. + +2. Commit the built files to the `gh-pages` branch: + ```bash + git add site/ + git commit -m "Build site for deployment" + git push origin `git subtree split --prefix site master`:gh-pages --force + ``` + +3. Verify that the site is live at your GitHub Pages URL (e.g., `https://.github.io/`). + + + [Cancer Complexity Knowledge Portal]: https://cancercomplexity.synapse.org/ [open a ticket]: https://github.com/mc2-center/data-models/issues/new?assignees=aditigopalan&labels=bug&projects=&template=bug-report.md&title=%5Bbug%5D+ [Data Curator App (DCA)]: https://dca.app.sagebionetworks.org/ -[Contributing guidelines]: https://mc2-center.github.io/data-models/contributing/ +[Contributing guidelines]: https://mc2-center.github.io/data-models/contributing/ \ No newline at end of file diff --git a/docs/assets/custom.css b/docs/assets/custom.css new file mode 100644 index 00000000..6b439597 --- /dev/null +++ b/docs/assets/custom.css @@ -0,0 +1,10 @@ +a[title] { + position: relative; + color: #0056b3; + text-decoration: none; + } + + a[title]:hover { + text-decoration: underline; + } + \ No newline at end of file diff --git a/docs/home/tutorial.md b/docs/home/tutorial.md new file mode 100644 index 00000000..83113f2e --- /dev/null +++ b/docs/home/tutorial.md @@ -0,0 +1,43 @@ +

+ MC2 Center Data Models Explorer +

+ +

+ + GitHub release (latest by date) + +

+ +**Welcome!** πŸ‘‹ Explore metadata terms used by MC2 Center +project by key, value, or descriptions. + +### How to Use + +1. ↑ Use the search bar above for a specific term + +2. ← Use the left navigation to explore all existing terms by category + +--- + +### Next Steps + +To start contributing to your resources on the Cancer Complexity Knowledge +Portal (CCKP), please read [our CCKP docs]. + +--- + +### Found an error? + +We are always looking for ways to improve our data models. If there is +an issue with an existing term - or if you have a suggestion - [let us know]! + +Or, if you would like to contribute to the project directly, read our +[contribution guidelines]. + +!!!important + Changing existing terminology may result in breaking changes downstream, + so not all suggestions may be considered unless they are well-justified. + +[our CCKP docs]: https://help.cancercomplexity.synapse.org/doc/contributing-and-updating-data-in-the-portal +[contribution guidelines]: https://mc2-center.github.io/data-models/contributing/ +[let us know]: https://github.com/mc2-center/data-models/issues/new?assignees=aditigopalan&labels=bug&projects=&template=bug-report.md&title=%5Bbug%5D+ \ No newline at end of file diff --git a/docs/model/DataDSP.md b/docs/model/DataDSP.md index 47de36ef..5bff4489 100644 --- a/docs/model/DataDSP.md +++ b/docs/model/DataDSP.md @@ -1,3 +1,33 @@ +This page outlines the attributes used to document and share dataset plans within MC2 Center-supported Synapse projects. The DataDSP model ensures that datasets are well-organized, traceable, and meet compliance requirements for data storage, sharing, and use. + + +## Required Fields +Mandatory fields like 'DSP Dataset Name,' 'DSP Dataset Assay,' 'DSP Dataset Species,' and 'DataDSP_id' are essential for uniquely identifying and categorizing datasets. These attributes ensure completeness and help users locate or reference datasets within repositories. + +## Download Template +To streamline data entry, you can download the [DataDSP CSV template](https://github.com/mc2-center/data-models/raw/main/templates/DataDSP.csv). + + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|-----------------------------|-------------------------------------------------------------------------------------------------------------------------| +| DSP Dataset Name | DSP_Dataset_Sales_Analysis_2020 | +| DSP Dataset Alias | Sales_Data_2020 | +| DSP Dataset Assay | Flow Cytometry | +| DSP Dataset Species | Asian Elephant | +| DSP Dataset File Formats | CSV, JSON | +| DSP Planned Upload Date | 2022-12-01 | +| DSP Dataset Grant Number | CA209971 | +| DSP Dataset Description | "Preprocessed audio data for machine learning models, including frequency components, spectral analysis, etc." | +| DSP Dataset Destination | "/home/user/datasets/dsp_output" | +| DSP Dataset Url | https://www.example.com/dataset/dsp1234 | + + +## Full Field Reference + + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/DataDSP.csv) {{ read_csv('sharingPlans/template.csv') }} \ No newline at end of file diff --git a/docs/model/dataset.md b/docs/model/dataset.md index ba47c184..13ae7a38 100644 --- a/docs/model/dataset.md +++ b/docs/model/dataset.md @@ -1,3 +1,35 @@ +This section outlines how to create a valid dataset entry, focusing on required fields, usage instructions, and an example to guide users. + +## Required Fields +Required fields ensure data accuracy, uniqueness, and discoverability. Fields such as 'Dataset Name', 'Dataset Alias', and 'DatasetView_id' must be filled out to submit an entry successfully. + + +## Download Template +You can download the [dataset entry template](https://github.com/mc2-center/data-models/raw/main/templates/DatasetView.csv), which includes all required fields, to streamline the data entry process. + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|-------------------------|---------------------------------------------------------------------------------------------------------| +| Dataset Name | U.S. Census Data 2019 | +| Dataset Alias | Census_2019 | +| Dataset Description | This dataset includes demographic and economic statistics collected in the U.S. Census 2019. | +| Dataset Url | [https://www.census.gov/data.html](https://www.census.gov/data.html) | +| Dataset Assay | None | +| Dataset Species | Human | +| Dataset Tumor Type | Not applicable | +| Dataset Tissue | Not applicable | +| Dataset File Formats | CSV, PDF | +| Dataset Grant Number | CA209971 | +| Dataset Pubmed Id | Not applicable | +| Dataset View | Table | +| DatasetView_id | DatasetView_12345 | + + + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/DatasetView.csv) {{ read_csv('dataset/template.csv') }} diff --git a/docs/model/education.md b/docs/model/education.md index 59ee52d0..0c067171 100644 --- a/docs/model/education.md +++ b/docs/model/education.md @@ -1,3 +1,34 @@ +This section provides a simplified guide on how to create an educational resource entry by focusing on required fields, usage instructions, and an example. + +## Required Fields +Certain fields, such as 'Resource Title', 'Resource Link', 'Resource Primary Audience', and 'EducationalResource_id', are mandatory to ensure that resources can be uniquely identified, accessed, and categorized effectively. + +## Download Template +Use the [educational resource template](https://github.com/mc2-center/data-models/raw/main/templates/EducationalResource.csv) to streamline your data entry process. The template contains pre-defined required fields. + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|----------------------------|-------------------------------------------------------------------------------------------------------------| +| Educational Resource | Online Tutoring Platform | +| Resource Title | Introduction to Biology | +| Resource Link | [https://www.example.com/resource_page.html](https://www.example.com/resource_page.html) | +| Resource Topic | Metabolism | +| Resource Activity Type | Simulation | +| Resource Primary Format | Video | +| Resource Intended Use | Curriculum/Instruction | +| Resource Primary Audience | Teacher | +| Resource Educational Level | High School | +| Resource Description | This comprehensive e-book offers insights into advanced Python programming techniques. | +| Resource Origin Institution| Smithsonian Institution | +| Resource Language | en | +| Resource Contributors | John Smith, Jane Doe, XYZ Corporation | +| Resource Grant Number | CA217655 | +| EducationalResource_id | ER_4567 | + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/EducationalResource.csv) {{ read_csv('education/template.csv') }} diff --git a/docs/model/file.md b/docs/model/file.md index b8ceb1c2..1fa5a816 100644 --- a/docs/model/file.md +++ b/docs/model/file.md @@ -1,3 +1,37 @@ +This section explains how to create a valid file entry, focusing on required fields, template usage, and an example for reference. + +## Required Fields +Fields like 'File Url', 'File Assay', 'File Level', 'File Species', 'File Format', and 'File Alias' are mandatory to ensure each file is uniquely identifiable and can be properly categorized and retrieved. + + +## Download Template +Use the [file entry template](https://github.com/mc2-center/data-models/raw/main/templates/FileView.csv) to streamline your data entry process. The template contains pre-defined required fields. + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +### Example Data Entry (Biology-Focused) + +| **Attribute** | **Example Value** | +|--------------------------------------|-------------------------------------------------------------------------------------------------------------| +| File Description | CSV file containing gene expression data for breast cancer samples | +| File Design | CSV (Comma-separated values) | +| File Url | [https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) | +| File Assay | RNA Sequencing | +| File Level | Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files) | +| File Species | Human | +| File Tumor Type | Breast Carcinoma | +| File Tissue | Breast | +| File View | List View | +| FileView_id | FileView_789012 | +| File Format | CSV | +| File Alias | Breast_Cancer_Gene_Expression.csv | + + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/FileView.csv) + + {{ read_csv('file/template.csv') }} \ No newline at end of file diff --git a/docs/model/grant.md b/docs/model/grant.md index 091602e1..69d21977 100644 --- a/docs/model/grant.md +++ b/docs/model/grant.md @@ -1,3 +1,40 @@ +This section explains how to create a valid grant entry, focusing on required fields, template usage, and an example for reference. + +## Required Fields +Fields like 'Grant Name', 'Grant Number', 'Grant Abstract', 'Grant Type', 'Grant Institution Name', 'Grant Investigator', 'Grant Consortium Name', 'GrantView_id', and 'Grant Start Date' are mandatory to ensure each grant is uniquely identifiable and properly categorized. + + + +## Download Template +Use the [grant entry template](https://github.com/mc2-center/data-models/raw/main/templates/GrantView.csv) to streamline your data entry process. The template contains pre-defined required fields. + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|----------------------------|-------------------------------------------------------------------------------------------------------------| +| Grant Name | Research Grant for Cancer Genomics | +| Grant Number | CA209971 | +| Grant Abstract | This grant funds research into genetic mutations contributing to aggressive cancers, focusing on tumor sequencing and gene expression analysis. | +| Grant Type | R37 | +| Grant View | Public | +| Grant Theme Name | Cancer Genomics, Precision Medicine | +| Grant Institution Name | Stanford University | +| Grant Institution Alias | Stanford | +| Grant Investigator | Dr. John Smith | +| Grant Consortium Name | HTAN | +| GrantView_id | GV12345 | +| Grant Synapse Team | Team: Project Management, Permission: Edit | +| Grant Synapse Project | Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant | +| Grant Start Date | 2022-01-01 | +| NIH RePORTER Link | [NIH Reporter Project Info](https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521) | +| Duration of Funding | 5 years | +| Embargo End Date | 2023-12-31 | + + + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/GrantView.csv) {{ read_csv('grant/template.csv') }} diff --git a/docs/model/person.md b/docs/model/person.md index fd2532b5..43d834ee 100644 --- a/docs/model/person.md +++ b/docs/model/person.md @@ -1,3 +1,39 @@ +This section explains how to create a valid person entry in the database, with a focus on required fields, template usage, and a practical example to ensure data consistency and accuracy. + +## Required Fields +Certain fields like 'Name', 'Last Known Institution', 'Working Group Participation', 'Chair Roles', 'Consent For Portal Display', 'Portal Display', 'Person Grant Number', 'Person Consortium Name', and 'PersonView_id' are mandatory to ensure that each entry provides sufficient detail for identification and categorization. + + +## Download Template +Download the [person entry template](https://github.com/mc2-center/data-models/raw/main/templates/PersonView.csv) for streamlined data entry, ensuring that all required fields are filled out. + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|-----------------------------|--------------------------------------------------------------------------------------------------------| +| Name | Dr. Jane Smith | +| Alternative Names | Jane Doe, J. Smith | +| Email | janesmith@example.com | +| Url | [Professional Profile](https://www.example.com/janesmith) | +| Orcid Id | 0000-0002-1825-0097 | +| Synapse Profile Id | SP98765432 | +| Last Known Institution | Stanford University | +| Working Group Participation | Cancer Metabolism, Genomic Data Integration | +| Chair Roles | Steering Committee, Ethics Review Panel | +| Consent For Portal Display | Yes | +| Portal Display | TRUE | +| Person View | Public Profile View | +| Person Grant Number | CA202177, CA304599 | +| Person Consortium Name | HTAN, PDMC | +| Person Publications | 25700473, 31245678 | +| Person Datasets | GSE12345, DOI:10.1000/sampledataset | +| Person Tools | R Studio, Python, Jupyter Notebook | +| Person Educational Resources | Advanced Cancer Research Training, NIH Data Science Workshop | +| PersonView_id | PersonView_12345 | + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/PersonView.csv) {{ read_csv('person/template.csv') }} \ No newline at end of file diff --git a/docs/model/publication.md b/docs/model/publication.md index f6dfe68b..3eafb9bf 100644 --- a/docs/model/publication.md +++ b/docs/model/publication.md @@ -1,3 +1,39 @@ +This section outlines how to accurately document a publication entry, ensuring compliance with data model specifications. Use the template and example provided to maintain data accuracy and consistency. + +## Required Fields +Fields such as 'Publication Journal', 'Pubmed Id', 'Pubmed Url', 'Publication Title', 'Publication Year', 'Publication Authors', 'Publication Abstract', 'Publication Assay', 'Publication Tumor Type', 'Publication Tissue', 'Publication Accessibility', 'Publication Grant Number', and 'PublicationView_id' are mandatory to ensure a comprehensive record for each publication. + + +## Download Template +Download the [publication entry template](https://github.com/mc2-center/data-models/raw/main/templates/PublicationView.csv) to streamline data entry and ensure required fields are completed. + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|----------------------------|---------------------------------------------------------------------------------------------------------------------| +| Publication Doi | [10.1016/j.cell.2016.02.013](https://doi.org/10.1016/j.cell.2016.02.013) | +| Publication Journal | *Nature Medicine* | +| Pubmed Id | 12345678 | +| Pubmed Url | [PubMed Link](https://www.ncbi.nlm.nih.gov/pubmed/12345678) | +| Publication Title | Role of Inflammatory Pathways in Cancer Progression | +| Publication Year | 2023 | +| Publication Keywords | Cancer Pathways, Inflammation, Tumor Microenvironment | +| Publication Authors | Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter | +| Publication Abstract | This study investigates inflammatory pathways and their impact on tumor progression and metastasis. | +| Publication Assay | RNA Sequencing, In Vivo Bioluminescence | +| Publication Tumor Type | Lung Cancer, Breast Cancer | +| Publication Tissue | Lung, Breast | +| Publication Accessibility | Open Access | +| Publication View | Online | +| Publication Grant Number | CA302123, CA301987 | +| Publication Dataset Alias | GSE45678, DOI:10.1000/exampledataset | +| PublicationView_id | PublicationView_45678 | + + + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/PublicationView.csv) {{ read_csv('publication/template.csv') }} \ No newline at end of file diff --git a/docs/model/study.md b/docs/model/study.md index e26b290a..9468bcf9 100644 --- a/docs/model/study.md +++ b/docs/model/study.md @@ -1,3 +1,35 @@ +This section provides detailed guidance for creating and maintaining a study entry in compliance with data model standards. It is essential to follow these specifications to ensure accuracy, consistency, and usability of study-related data. + +## Required Fields +Certain attributes, such as 'Study Name', 'Study Description', 'Study Investigator', 'Study_id', 'Study Number of Participants', and 'Study De-identification Method Type', are marked as mandatory. Completing these fields ensures a comprehensive and standardized data entry. + + +## Download Template +To streamline the process, download the [study entry template](https://github.com/mc2-center/data-models/raw/main/templates/Study.csv) for standardized data entry. + + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|--------------------------------------|-----------------------------------------------------------------------------------------------------------------------| +| Study | Biology | +| Study Name | Effects of Diet and Exercise on Obesity | +| Study Description | Analysis of Cardiovascular Response during Exercise | +| Study Investigator | Dr. Jane Doe, PhD in Nutrition Science, University of Texas | +| Study Reuse Statement | Data from this study may be reused under conditions of proper citation and ethical approval. | +| Study_id | STUDY_2024_OBESITY_EXERCISE | +| Study Number of Participants | 5000 | +| Study De-identification Method Type | Manual | +| Study De-identification Method Description | Personal identifiers such as names and dates were removed, and randomization techniques were applied. | +| Study De-identification Method Software | Safe Harbor Privacy Software | +| Study dbGaP Accession Id | phs000424.v7.p2 | +| Study License | CC BY-NC 4.0 | +| Study Data Use Codes | IRB, PUB, HMB | + + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/Study.csv) {{ read_csv('study/template.csv') }} \ No newline at end of file diff --git a/docs/model/tool.md b/docs/model/tool.md index 5e23c1aa..39d90c67 100644 --- a/docs/model/tool.md +++ b/docs/model/tool.md @@ -1,3 +1,36 @@ +This section outlines the data attributes for registering and documenting a software tool in a structured and standardized manner. Each attribute in the table below has a distinct purpose, helping improve the usability, traceability, and functionality of the tool in research or technical environments. + + +## Required Attributes +Mandatory attributes such as 'Tool Name', 'Tool Description', 'Tool Entity Role', 'Tool Entity Type', 'Tool Release Date', and others are necessary for completeness and usability. These attributes provide essential data points for tool identification, description, and functionality. + + +## Download Template +You can download the [ToolView CSV template](https://github.com/mc2-center/data-models/raw/main/templates/ToolView.csv) to streamline data entry. + + +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. + +| **Attribute** | **Example Value** | +|-------------------------------|-----------------------------------------------------------------------------------------------------------------------| +| Tool Name | Adobe Photoshop | +| Tool Description | "A photo editing tool with advanced image manipulation features, supporting multiple file formats and layers." | +| Tool Release Date | January 5, 2022 | +| Tool Entity Role | Developer, Maintainer | +| Tool Entity Type | Organization | +| Tool Input Data | DNA Sequence | +| Tool Output Data | Gene ID (NCBI): NM_001282392.1 | +| Tool Grant Number | CA209975 | +| Tool Documentation Url | https://docs.example.com/tool-guide.html | +| Tool Operating System | Windows, MacOS | +| Tool Version | 3.2.1 | +| Tool View | Detail View | +| Tool Pubmed Id | 26760201 | +| Tool License | Apache-2.0 | + +## Full Field Reference + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/ToolView.csv) {{ read_csv('tool/template.csv') }} diff --git a/docs/valid_values/file.md b/docs/valid_values/file.md index 641ae514..4feefc26 100644 --- a/docs/valid_values/file.md +++ b/docs/valid_values/file.md @@ -4,7 +4,7 @@ List of standard terms for the [File Data Model](../model/file.md).
-{{ read_csv('shared/processLevel.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} +{{ read_csv('file/processLevel.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }}
diff --git a/docs/valid_values/sharingPlans.md b/docs/valid_values/sharingPlans.md index c0d91354..e8fcac27 100644 --- a/docs/valid_values/sharingPlans.md +++ b/docs/valid_values/sharingPlans.md @@ -39,7 +39,7 @@ List of standard terms for the [Dataset Sharing Plan Model](../model/DataDSP.md)
-{{ read_csv('shared/processLevel.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} +{{ read_csv('file/processLevel.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }}
diff --git a/mkdocs.yml b/mkdocs.yml index 77d91ca6..0650c485 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -9,7 +9,9 @@ repo_name: data-models # Navigation nav: - - Home: index.md + - Home: + - index.md + - home/tutorial.md - Data Models: - Dataset Data Model: model/dataset.md - Dataset Sharing Plan: model/DataDSP.md @@ -78,6 +80,9 @@ plugins: hooks: - scripts/hooks.py +extra_css: + - assets/custom.css + markdown_extensions: - admonition - pymdownx.details diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index 1c98a06b..31c3a686 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -1,15 +1,15 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Dataset Name,Name of the dataset,,,TRUE,,,,, -Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique -Dataset Description,Description of the dataset.,,,FALSE,,,,, -Dataset Design,The overall design of the dataset.,,,FALSE,,,,, -Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like -Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like -Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like -Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats, Data Use Codes",FALSE,,,Study,, -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +Dataset Name,Name of the dataset,,,True,,,,,,"""U.S. Census Data 2019""" +Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,True,,,,,unique,"""Financial Quarter 1 Sales Data 2020""" +Dataset Description,Description of the dataset.,,,False,,,,,,"This dataset aggregates Netflix programming data from 2019 to 2021. It includes information on the titles of shows/movies, premier date, genres, duration, and audience rating. The data is derived from publicly available information and directly from Netflix. This dataset can be used for programming analysis, viewing trend investigations, and content recommendation research. Each row represents a unique title, and there are no missing values." +Dataset Design,The overall design of the dataset.,,,False,,,,,,"'Cross-sectional', 'Time-series', 'Pooled Cross-sections', 'Panel data'" +Dataset Url,The url of where the dataset is stored.,,,True,,,,,url,https://www.kaggle.com/uciml/iris +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,Dataset Assay: 16S Ribosomal Gene Sequencing Assay +Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,Dataset Species: Cat +Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,Dataset Tumor Type: Glioblastoma +Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Dataset Tissue: Kidney +Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,"""Dataset File Formats: AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" +Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats, Data Use Codes",False,,,Study,,,"Table, Graph, Spreadsheet, List, Map, Card" +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209971 +Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,False,,,,,list like,25700473 +DatasetView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""DatasetView_12345""" diff --git a/modules/dataset/template.csv b/modules/dataset/template.csv new file mode 100644 index 00000000..c893cce0 --- /dev/null +++ b/modules/dataset/template.csv @@ -0,0 +1,15 @@ +Attribute,Description,Required,Validation Rules,Examples +Dataset Name,Name of the dataset,True,_None_,"""U.S. Census Data 2019""" +Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",True,unique,"""Financial Quarter 1 Sales Data 2020""" +Dataset Description,Description of the dataset.,False,_None_,"This dataset aggregates Netflix programming data from 2019 to 2021. It includes information on the titles of shows/movies, premier date, genres, duration, and audience rating. The data is derived from publicly available information and directly from Netflix. This dataset can be used for programming analysis, viewing trend investigations, and content recommendation research. Each row represents a unique title, and there are no missing values." +Dataset Design,The overall design of the dataset.,False,_None_,"'Cross-sectional', 'Time-series', 'Pooled Cross-sections', 'Panel data'" +Dataset Url,The url of where the dataset is stored.,True,url,https://www.kaggle.com/uciml/iris +[Dataset Assay](../valid_values/dataset.md#attribute-dataset-assay),"The assay the dataset is representative of. Multiple values permitted, comma separated.",True,list like,Dataset Assay: 16S Ribosomal Gene Sequencing Assay +[Dataset Species](../valid_values/dataset.md#attribute-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Dataset Species: Cat +[Dataset Tumor Type](../valid_values/dataset.md#attribute-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Dataset Tumor Type: Glioblastoma +[Dataset Tissue](../valid_values/dataset.md#attribute-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Dataset Tissue: Kidney +[Dataset File Formats](../valid_values/dataset.md#attribute-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,"""Dataset File Formats: AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" +Dataset View,The denormalized manifest for dataset submission.,False,_None_,"Table, Graph, Spreadsheet, List, Map, Card" +[Dataset Grant Number](../valid_values/dataset.md#attribute-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 +Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",False,list like,25700473 +DatasetView_id,A unique primary key that enables record updates using schematic.,True,unique,"""DatasetView_12345""" diff --git a/modules/education/annotationProperty.csv b/modules/education/annotationProperty.csv index cf30d465..92ba9250 100644 --- a/modules/education/annotationProperty.csv +++ b/modules/education/annotationProperty.csv @@ -1,25 +1,26 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, Resource Title, Resource Link, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Grant Number, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",FALSE,,,Grant View,, -Resource Title,Title of the item.,,,TRUE,,,,OER,str -Resource Link,The URL or DOI that links to the item.,,,TRUE,,,,OER,url -Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,TRUE,,,,OER,list like -Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,TRUE,,,,OER,list like -Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,TRUE,,,,OER,list like -Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,TRUE,,,,OER,list like -Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,TRUE,,,,OER,list like -Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,TRUE,,,,OER,list like -Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str -Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like -Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like::regex search [a-z]{2} -Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like -Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like -Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like -Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str -Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,FALSE,,,,OER,unique -Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,list like -Resource Media Accessibility,"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.","Alternative Text, Audio Description, Braille, Captions, ChemML, Described Math, Display Transformability, Haptic, High Contrast, Large Print, Latex, Long Description, MathML, Nemeth Braille, Sign Language, Structural Navigation, Tactile Graphics, Text Transcript",,FALSE,,,,OER,list like -Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,FALSE,,,,OER,list like -Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/dataset,list like -Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/tool,list like -EducationalResource_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, Resource Title, Resource Link, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Grant Number, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",False,,,Grant View,,,"""Online Tutoring Platform""" +Resource Title,Title of the item.,,,True,,,,OER,str,"""Introduction to Biology""" +Resource Link,The URL or DOI that links to the item.,,,True,,,,OER,url,https://www.example.com/resource_page.html +Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,True,,,,OER,list like,Resource Topic: Metabolism +Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,True,,,,OER,list like,"Attribute: Resource Activity Type +Example: Simulation" +Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,True,,,,OER,list like,Resource Primary Format: Video +Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,True,,,,OER,list like,"""Resource Intended Use: Curriculum/Instruction""" +Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,True,,,,OER,list like,Resource Primary Audience: Teacher +Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,True,,,,OER,list like,Resource Educational Level: High School +Resource Description,Abstract or summary of the item.,,,True,,,,OER,str,"""This comprehensive e-book offering insights into advanced Python programming techniques is available for download. It covers numerous topics including object-oriented programming, data structures, algorithms, decorators, generators, exception handling, testing, and debugging.""" +Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,True,,,,OER,list like,Smithsonian Institution +Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,True,,,,OER,list like::regex search [a-z]{2},Resource Language: en +Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,True,,,,OER,list like,"John Smith, Jane Doe, XYZ Corporation" +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,MC2/grant,list like,Resource Grant Number: CA217655 +Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,False,,,,OER,list like,Climate Change Effects +Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,OER,list like,Resource License: Apache-2.0 +Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,False,,,,OER,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. +Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,False,,,,OER,unique,Sales_Database +Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,False,,,,OER,list like,ResourceID_56789 +Resource Media Accessibility,"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.","Alternative Text, Audio Description, Braille, Captions, ChemML, Described Math, Display Transformability, Haptic, High Contrast, Large Print, Latex, Long Description, MathML, Nemeth Braille, Sign Language, Structural Navigation, Tactile Graphics, Text Transcript",,False,,,,OER,list like,"The educational video on the website provides 'Captions' for viewers with hearing impairments, making it an excellent example of 'Resource Media Accessibility'." +Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,False,,,,OER,list like,"An example for the attribute 'Resource Access Hazard' could be a website for a video game which includes flashing images and intense sequences of motion. The site also uses loud sounds and high intensity simulations which some users can find distressing or harmful, particularly if they have conditions such as epilepsy or severe motion sickness. Therefore, the website has a potential ""Resource Access Hazard.""" +Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,False,,,,MC2/dataset,list like,"""Census Data 2010""" +Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,False,,,,MC2/tool,list like,https://www.khanacademy.org/ +EducationalResource_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,ER_4567 diff --git a/modules/education/template.csv b/modules/education/template.csv new file mode 100644 index 00000000..7527a66a --- /dev/null +++ b/modules/education/template.csv @@ -0,0 +1,26 @@ +Attribute,Description,Required,Validation Rules,Examples +Educational Resource,Manifest for describing educational resources.,False,_None_,"""Online Tutoring Platform""" +Resource Title,Title of the item.,True,str,"""Introduction to Biology""" +Resource Link,The URL or DOI that links to the item.,True,url,https://www.example.com/resource_page.html +[Resource Topic](../valid_values/education.md#attribute-resource-topic),"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.",True,list like,Resource Topic: Metabolism +[Resource Activity Type](../valid_values/education.md#attribute-resource-activity-type),The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,True,list like,"Attribute: Resource Activity Type +Example: Simulation" +[Resource Primary Format](../valid_values/education.md#attribute-resource-primary-format),"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.",True,list like,Resource Primary Format: Video +[Resource Intended Use](../valid_values/education.md#attribute-resource-intended-use),The purpose of the material for education. Multiple values should be provided as a comma separated list.,True,list like,"""Resource Intended Use: Curriculum/Instruction""" +[Resource Primary Audience](../valid_values/education.md#attribute-resource-primary-audience),The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,True,list like,Resource Primary Audience: Teacher +[Resource Educational Level](../valid_values/education.md#attribute-resource-educational-level),"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.",True,list like,Resource Educational Level: High School +Resource Description,Abstract or summary of the item.,True,str,"""This comprehensive e-book offering insights into advanced Python programming techniques is available for download. It covers numerous topics including object-oriented programming, data structures, algorithms, decorators, generators, exception handling, testing, and debugging.""" +Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,True,list like,Smithsonian Institution +[Resource Language](../valid_values/education.md#attribute-resource-language),Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,True,list like::regex search [a-z]{2},Resource Language: en +Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,True,list like,"John Smith, Jane Doe, XYZ Corporation" +[Resource Grant Number](../valid_values/education.md#attribute-resource-grant-number),"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.",True,list like,Resource Grant Number: CA217655 +Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",False,list like,Climate Change Effects +[Resource License](../valid_values/education.md#attribute-resource-license),"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.",False,list like,Resource License: Apache-2.0 +Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",False,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. +Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",False,unique,Sales_Database +Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",False,list like,ResourceID_56789 +[Resource Media Accessibility](../valid_values/education.md#attribute-resource-media-accessibility),"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.",False,list like,"The educational video on the website provides 'Captions' for viewers with hearing impairments, making it an excellent example of 'Resource Media Accessibility'." +[Resource Access Hazard](../valid_values/education.md#attribute-resource-access-hazard),"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.",False,list like,"An example for the attribute 'Resource Access Hazard' could be a website for a video game which includes flashing images and intense sequences of motion. The site also uses loud sounds and high intensity simulations which some users can find distressing or harmful, particularly if they have conditions such as epilepsy or severe motion sickness. Therefore, the website has a potential ""Resource Access Hazard.""" +Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",False,list like,"""Census Data 2010""" +Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",False,list like,https://www.khanacademy.org/ +EducationalResource_id,A unique primary key that enables record updates using schematic.,True,unique,ER_4567 diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index ed2114a4..1de2b89d 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -1,19 +1,20 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -File Description,Description of the file.,,,FALSE,,,,,str -File Design,The overall design of the dataset or file.,,,FALSE,,,,,str -File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, -File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,TRUE,,,,HTAN, -File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like -File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like -File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, -FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",,,FALSE,,,,,str -File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int -File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str -File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num -File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num -File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, -File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +File Description,Description of the file.,,,False,,,,,str,"""CSV file containing gene expression data for breast cancer""" +File Design,The overall design of the dataset or file.,,,False,,,,,str,File Design: CSV (Comma-separated values) +File Url,The url of where the file is stored.,,,True,,,,,url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) +File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,,File Assay: RNA Sequencing +File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,True,,,,HTAN,,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" +File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,File Species: Human +File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,File Tumor Type: Breast Carcinoma +File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Breast +File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",False,,,Study,,,List View +FileView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""FileView_123456""" +File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,False,,,,,str, +File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",,,False,,,,,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." +File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,False,,,,,int,10-9876543210-12 +File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,False,,,,,str,Seconds +File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,False,,,,,num,"""2 hours 45 minutes""" +File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,False,,,,,num,"""120 minutes""" +File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,True,,,,,,"Attribute: File Format +Example: CSV " +File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,True,,,,,unique,"""Breast_Cancer_Gene_Expression.csv""" diff --git a/modules/file/template.csv b/modules/file/template.csv new file mode 100644 index 00000000..446d810f --- /dev/null +++ b/modules/file/template.csv @@ -0,0 +1,20 @@ +Attribute,Description,Required,Validation Rules,Examples +File Description,Description of the file.,False,str,"""CSV file containing gene expression data for breast cancer""" +File Design,The overall design of the dataset or file.,False,str,File Design: CSV (Comma-separated values) +File Url,The url of where the file is stored.,True,url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) +[File Assay](../valid_values/file.md#attribute-file-assay),The assay the file is representative of.,True,_None_,File Assay: RNA Sequencing +[File Level](../valid_values/file.md#attribute-file-level),The processing level the file can be mapped to. ,True,_None_,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" +[File Species](../valid_values/file.md#attribute-file-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,File Species: Human +[File Tumor Type](../valid_values/file.md#attribute-file-tumor-type),"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.",False,list like,File Tumor Type: Breast Carcinoma +[File Tissue](../valid_values/file.md#attribute-file-tissue),"Tissue type(s) associated with the file. Multiple values permitted, comma separated.",False,list like,Breast +File View,The denormalized manifest for file submission.,False,_None_,List View +FileView_id,A unique primary key that enables record updates using schematic.,True,unique,"""FileView_123456""" +File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,False,str, +File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",False,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." +File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",False,int,10-9876543210-12 +File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,False,str,Seconds +File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,False,num,"""2 hours 45 minutes""" +File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,False,num,"""120 minutes""" +[File Format](../valid_values/file.md#attribute-file-format),The format of the file described by this entry.,True,_None_,"Attribute: File Format +Example: CSV " +File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",True,unique,"""Breast_Cancer_Gene_Expression.csv""" diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index 000dafb7..7716abe9 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -1,18 +1,18 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Grant Name,Name of the grant,,,TRUE,,,,, -Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ -Grant Abstract,Abstract for the grant,,,TRUE,,,,, -Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, -Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, -Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like -Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like -Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, -GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,FALSE,,,,,url -Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,FALSE,,,,,url -Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date -NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url -Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int -Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +Grant Name,Name of the grant,,,True,,,,,,"""COVID-19 Small Business Relief Fund""" +Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,True,,,,,regex search ^CA\d{6}$,DE-FG02-01ER45923 +Grant Abstract,Abstract for the grant,,,True,,,,,,"""This grant aims to study the effects of climate change on the migration patterns of bird species across North America. Over the course of the five-year project, the research team will employ cutting-edge tracking techniques and extensive field work to gather data. The findings will be used to predict future shifts in bird migration, and inform wildlife conservation strategies. In addition, this study will contribute to the broader understanding of the impacts of global warming on biodiversity and ecosystems.""" +Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,True,,,,,,R37 +Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",False,,,,,,Grant View: Public +Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,True,,,,,list like,"Interaction, Viral/Bacterial Oncogenesis" +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,True,,,,,list like,Brigham and Womens Hospital +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,True,,,,,list like,Stanford +Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,True,,,,,list like,Dr. John Smith +Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,,Grant Consortium Name: HTAN +GrantView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""GV12345""" +Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,False,,,,,url,"Team: Project Management, Permission: Edit" +Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,False,,,,,url,"Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant" +Grant Start Date,The start date of the grant YYYY-MM-DD format,,,True,,,,,date,01/01/2022 +NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,True,,,,,url,https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521&icde=49775456&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC&pball= +Duration of Funding,"Duration of the funding period, in years",,,False,,,,,int,3 years +Embargo End Date,Date at which an embargo on related resources had lifted,,,False,,,,,date,2023-12-31 diff --git a/modules/grant/template.csv b/modules/grant/template.csv new file mode 100644 index 00000000..e962013a --- /dev/null +++ b/modules/grant/template.csv @@ -0,0 +1,18 @@ +Attribute,Description,Required,Validation Rules,Examples +Grant Name,Name of the grant,True,_None_,"""COVID-19 Small Business Relief Fund""" +Grant Number,"Number of the grant (i.e. ""CA------"" format)",True,regex search ^CA\\d{6}$,DE-FG02-01ER45923 +Grant Abstract,Abstract for the grant,True,_None_,"""This grant aims to study the effects of climate change on the migration patterns of bird species across North America. Over the course of the five-year project, the research team will employ cutting-edge tracking techniques and extensive field work to gather data. The findings will be used to predict future shifts in bird migration, and inform wildlife conservation strategies. In addition, this study will contribute to the broader understanding of the impacts of global warming on biodiversity and ecosystems.""" +[Grant Type](../valid_values/grant.md#attribute-grant-type),Type of grant,True,_None_,R37 +Grant View,The denormalized manifest for grant submission.,False,_None_,Grant View: Public +[Grant Theme Name](../valid_values/grant.md#attribute-grant-theme-name),Theme(s) associated with the grant. 1...*,True,list like,"Interaction, Viral/Bacterial Oncogenesis" +[Grant Institution Name](../valid_values/grant.md#attribute-grant-institution-name),The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,True,list like,Brigham and Womens Hospital +[Grant Institution Alias](../valid_values/grant.md#attribute-grant-institution-alias),The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,True,list like,Stanford +Grant Investigator,Investigator(s) associated witht the grant. 1...*,True,list like,Dr. John Smith +[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. 1...1,True,_None_,Grant Consortium Name: HTAN +GrantView_id,A unique primary key that enables record updates using schematic.,True,unique,"""GV12345""" +Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",False,url,"Team: Project Management, Permission: Edit" +Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",False,url,"Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant" +Grant Start Date,The start date of the grant YYYY-MM-DD format,True,date,01/01/2022 +NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,True,url,https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521&icde=49775456&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC&pball= +Duration of Funding,"Duration of the funding period, in years",False,int,3 years +Embargo End Date,Date at which an embargo on related resources had lifted,False,date,2023-12-31 diff --git a/modules/person/annotationProperty.csv b/modules/person/annotationProperty.csv index ffdcd7c4..795111d0 100644 --- a/modules/person/annotationProperty.csv +++ b/modules/person/annotationProperty.csv @@ -1,20 +1,20 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Name,Name of the individual,,,TRUE,,,,, -Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Email,Email address of the individual,,,FALSE,,,,, -Url,"URL, e.g., individual's home page address",,,FALSE,,,,, -Orcid Id,Unique identifier (ORCID ID) of the individual,,,FALSE,,,,,regex search \d{4}\-\d{4}\-\d{4}\-\d{3}(\d|X) -Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,,,FALSE,,,,,unique -Last Known Institution,Last known institutional affiliation of the individual.,,,TRUE,,,,, -Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,TRUE,,,,,list like -Chair Roles,"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.","Annual Meeting, None, Steering Committee, Working Group",,TRUE,,,,,list like -Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,TRUE,,,,, -Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, -Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,Grant View,, -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like -Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -PersonView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +Name,Name of the individual,,,True,,,,,,John Doe +Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,False,,,,,list like,"Alternative Names: Bob, Bobby, Robert" +Email,Email address of the individual,,,False,,,,,,johndoe@example.com +Url,"URL, e.g., individual's home page address",,,False,,,,,,https://www.google.com +Orcid Id,Unique identifier (ORCID ID) of the individual,,,False,,,,,regex search \d{4}\-\d{4}\-\d{4}\-\d{3}(\d|X),0000-0002-1825-0097 +Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,,,False,,,,,unique,SP12345678 +Last Known Institution,Last known institutional affiliation of the individual.,,,True,,,,,,Harvard University +Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,True,,,,,list like,Working Group Participation: Cell and Tissue Mechanics +Chair Roles,"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.","Annual Meeting, None, Steering Committee, Working Group",,True,,,,,list like,Steering Committee +Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,True,,,,,,Consent For Portal Display: Yes +Portal Display,Display content in CCKP,"FALSE, TRUE",,True,,,,,,Portal Display: TRUE +Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",False,,,Grant View,,,Public Profile View +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,Person Grant Number: CA202177 +Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,list like,PDMC +Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Harry Potter and the Sorcerer's Stone"" by J.K. Rowling, ""1984"" by George Orwell, ""To Kill a Mockingbird"" by Harper Lee" +Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"Name: John Doe,Gender: Male, Birthday: July 1, 1980, Nationality: American, Address: 123 Main Street, Anytown, USA, Phone Number: 123-456-7890, Email: johndoe@email.com, Occupation: Software Engineer, Marital Status: Married, Number of Children: 2" +Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"Hammer, Screwdriver, Laptop, Paintbrush, Scissors" +Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"College textbooks, online courses, research papers, educational software, library access, tutoring services, webinars, academic journals, study guides, educational workshops, scholarship information." +PersonView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,PersonView_12345 diff --git a/modules/person/template.csv b/modules/person/template.csv new file mode 100644 index 00000000..4e0be9e7 --- /dev/null +++ b/modules/person/template.csv @@ -0,0 +1,20 @@ +Attribute,Description,Required,Validation Rules,Examples +Name,Name of the individual,True,_None_,John Doe +Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",False,list like,"Alternative Names: Bob, Bobby, Robert" +Email,Email address of the individual,False,_None_,johndoe@example.com +Url,"URL, e.g., individual's home page address",False,_None_,https://www.google.com +Orcid Id,Unique identifier (ORCID ID) of the individual,False,regex search \\d{4}\\-\\d{4}\\-\\d{4}\\-\\d{3}(\\d|X),0000-0002-1825-0097 +Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,False,unique,SP12345678 +Last Known Institution,Last known institutional affiliation of the individual.,True,_None_,Harvard University +[Working Group Participation](../valid_values/person.md#attribute-working-group-participation),"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.",True,list like,Working Group Participation: Cell and Tissue Mechanics +[Chair Roles](../valid_values/person.md#attribute-chair-roles),"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.",True,list like,Steering Committee +[Consent For Portal Display](../valid_values/person.md#attribute-consent-for-portal-display),Consent from individual to display Person information in the CCKP,True,_None_,Consent For Portal Display: Yes +[Portal Display](../valid_values/person.md#attribute-portal-display),Display content in CCKP,True,_None_,Portal Display: TRUE +Person View,The denormalized manifest for person submission.,False,_None_,Public Profile View +[Person Grant Number](../valid_values/person.md#attribute-person-grant-number),"Grant number(s) associated with the person. Multiple values permitted, comma separated.",True,list like,Person Grant Number: CA202177 +[Person Consortium Name](../valid_values/person.md#attribute-person-consortium-name),"Consortium(s) associated with the person. Multiple values permitted, comma separated.",True,list like,PDMC +Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",False,list like,"""Harry Potter and the Sorcerer's Stone"" by J.K. Rowling, ""1984"" by George Orwell, ""To Kill a Mockingbird"" by Harper Lee" +Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",False,list like,"Name: John Doe,Gender: Male, Birthday: July 1, 1980, Nationality: American, Address: 123 Main Street, Anytown, USA, Phone Number: 123-456-7890, Email: johndoe@email.com, Occupation: Software Engineer, Marital Status: Married, Number of Children: 2" +Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",False,list like,"Hammer, Screwdriver, Laptop, Paintbrush, Scissors" +Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",False,list like,"College textbooks, online courses, research papers, educational software, library access, tutoring services, webinars, academic journals, study guides, educational workshops, scholarship information." +PersonView_id,A unique primary key that enables record updates using schematic.,True,unique,PersonView_12345 diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index 3545ce9a..1bd8dd24 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -1,18 +1,18 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,FALSE,,,,,unique -Publication Journal,The name of the periodical publication in which the publication was published.,,,TRUE,,,,, -Pubmed Id,The PubMed identifier associated with the publication.,,,TRUE,,,,,unique -Pubmed Url,Pubmed URL for the publication,,,TRUE,,,,,url -Publication Title,Title of the publication,,,TRUE,,,,, -Publication Year,Year of the publication,,,TRUE,,,,, -Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like -Publication Abstract,The abstract of the publication.,,,TRUE,,,,, -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like -Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like -Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, -Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility",FALSE,,,Study,, -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,False,,,,,unique,10.1016/j.cell.2016.02.013 +Publication Journal,The name of the periodical publication in which the publication was published.,,,True,,,,,,"""The New England Journal of Medicine""" +Pubmed Id,The PubMed identifier associated with the publication.,,,True,,,,,unique,26571401 +Pubmed Url,Pubmed URL for the publication,,,True,,,,,url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 +Publication Title,Title of the publication,,,True,,,,,,"""The New York Times""" +Publication Year,Year of the publication,,,True,,,,,,2018 +Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Climate Change, Global Warming, Greenhouse Gases, Environmental Impact, Sustainability""" +Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,True,,,,,list like,"""J.K. Rowling, Stephen King, Jane Austen""" +Publication Abstract,The abstract of the publication.,,,True,,,,,,"""This article explores the developmental effects of cannabinoid exposure in zebrafish, one of the important vertebrate model systems in functional and comparative genomics. Drawing from a series of rigorous molecular analysis, the study establishes that prolonged exposure to cannabinoids impairs critical developmental processes at particular stages. The findings of this research not only contribute to our understanding of zebrafish neurobiology but also raise critical implications for human health, particularly in the context of increasing medicinal use of cannabinoids.""" +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,Publication Assay: In Vivo Bioluminescence +Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,True,,,,,list like,Acute Lymphoblastic Leukemia +Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,True,,,,,list like,Publication Tissue: Brain +Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,True,,,,,,Publication Accessibility: Open Access +Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility",False,,,Study,,,Online +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,Publication Grant Number: CA202123 +Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Annual Crime Report 2020""" +PublicationView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,1012 diff --git a/modules/publication/template.csv b/modules/publication/template.csv new file mode 100644 index 00000000..41a70851 --- /dev/null +++ b/modules/publication/template.csv @@ -0,0 +1,18 @@ +Attribute,Description,Required,Validation Rules,Examples +Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,False,unique,10.1016/j.cell.2016.02.013 +Publication Journal,The name of the periodical publication in which the publication was published.,True,_None_,"""The New England Journal of Medicine""" +Pubmed Id,The PubMed identifier associated with the publication.,True,unique,26571401 +Pubmed Url,Pubmed URL for the publication,True,url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 +Publication Title,Title of the publication,True,_None_,"""The New York Times""" +Publication Year,Year of the publication,True,_None_,2018 +Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",False,list like,"""Climate Change, Global Warming, Greenhouse Gases, Environmental Impact, Sustainability""" +Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",True,list like,"""J.K. Rowling, Stephen King, Jane Austen""" +Publication Abstract,The abstract of the publication.,True,_None_,"""This article explores the developmental effects of cannabinoid exposure in zebrafish, one of the important vertebrate model systems in functional and comparative genomics. Drawing from a series of rigorous molecular analysis, the study establishes that prolonged exposure to cannabinoids impairs critical developmental processes at particular stages. The findings of this research not only contribute to our understanding of zebrafish neurobiology but also raise critical implications for human health, particularly in the context of increasing medicinal use of cannabinoids.""" +[Publication Assay](../valid_values/publication.md#attribute-publication-assay),"Assay(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Publication Assay: In Vivo Bioluminescence +[Publication Tumor Type](../valid_values/publication.md#attribute-publication-tumor-type),"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Acute Lymphoblastic Leukemia +[Publication Tissue](../valid_values/publication.md#attribute-publication-tissue),"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Publication Tissue: Brain +[Publication Accessibility](../valid_values/publication.md#attribute-publication-accessibility),Whether there are non-monetary restrictions on accessing an the publication.,True,_None_,Publication Accessibility: Open Access +Publication View,The denormalized manifest for publication submission.,False,_None_,Online +[Publication Grant Number](../valid_values/publication.md#attribute-publication-grant-number),"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.",True,list like,Publication Grant Number: CA202123 +Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",False,list like,"""Annual Crime Report 2020""" +PublicationView_id,A unique primary key that enables record updates using schematic.,True,unique,1012 diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index c68dad23..27c1538c 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -1,23 +1,25 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination",FALSE,,,Study,, -DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like -DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like -DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like -DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,FALSE,,,,,list like -DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num -DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,FALSE,,,,,num -DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,FALSE,,,,,num -DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,FALSE,,,,,num -DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,TRUE,,,,,date -DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date -DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -DSP Dataset Url,The url of where the dataset is or will be stored.,,,FALSE,,,,,url -DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like -DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ -DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str -DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination",False,,,Study,,,100Hz +DSP Dataset Name,Name of the dataset,,,True,,,,,str,DSP_Dataset_Sales_Analysis_2020 +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",,,False,,,,,unique,"""Sales_Data_2020""" +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,"In the DSP (Data Submission Portal) dataset, the Assay attribute for my example would be 'Flow Cytometry'. This assay allows for detailed multiparametric analysis of thousands of individual cells in a fast and efficient manner." +DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,DSP Dataset Species: Asian Elephant +DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,"Attribute: DSP Dataset Tumor Type +Example: Lung Carcinoma" +DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Brain +DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,"Attribute: DSP Dataset File Formats +Example: CSV" +DataDSP_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,DataDSP_56789 +DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,False,,,,,list like,DSP Dataset Level: Level 3 +DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,False,,,,,num,25 +DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,False,,,,,num,50000 +DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,False,,,,,num,12 +DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,False,,,,,num,16 GB +DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,True,,,,,date,2022-12-01 +DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,False,,,,,date,01/25/2023 +DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209971 +DSP Dataset Url,The url of where the dataset is or will be stored.,,,False,,,,,url,https://www.example.com/dataset/dsp1234 +DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,False,,,,Data Use Ontology,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." +DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,False,,,,,regex match syn\d+,"DSP IRB Form V2.0, 2020" +DSP Dataset Description,A text description of the files contained in this dataset.,,,False,,,,,str,"The DSP (Digital Signal Processing) Dataset is a collection of preprocessed data from audio signals. It includes various features extracted from these signals such as frequency components, amplitude modulation, spectral content, etc. The data can be used for training machine learning models in applications like speech recognition, music classification, sound source localization, and other audio processing tasks." +DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,False,,,,,str,"""/home/user/datasets/dsp_output""" diff --git a/modules/sharingPlans/template.csv b/modules/sharingPlans/template.csv new file mode 100644 index 00000000..b9fdbdde --- /dev/null +++ b/modules/sharingPlans/template.csv @@ -0,0 +1,25 @@ +Attribute,Description,Required,Validation Rules,Examples +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_,100Hz +DSP Dataset Name,Name of the dataset,True,str,DSP_Dataset_Sales_Analysis_2020 +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",False,unique,"""Sales_Data_2020""" +[DSP Dataset Assay](../valid_values/sharingPlans.md#attribute-dsp-dataset-assay),"The type of data contained in this group of files. Multiple values permitted, comma separated.",True,list like,"In the DSP (Data Submission Portal) dataset, the Assay attribute for my example would be 'Flow Cytometry'. This assay allows for detailed multiparametric analysis of thousands of individual cells in a fast and efficient manner." +[DSP Dataset Species](../valid_values/sharingPlans.md#attribute-dsp-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,DSP Dataset Species: Asian Elephant +[DSP Dataset Tumor Type](../valid_values/sharingPlans.md#attribute-dsp-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,"Attribute: DSP Dataset Tumor Type +Example: Lung Carcinoma" +[DSP Dataset Tissue](../valid_values/sharingPlans.md#attribute-dsp-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Brain +[DSP Dataset File Formats](../valid_values/sharingPlans.md#attribute-dsp-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,"Attribute: DSP Dataset File Formats +Example: CSV" +DataDSP_id,A unique primary key that enables record updates using schematic.,True,unique,DataDSP_56789 +[DSP Dataset Level](../valid_values/sharingPlans.md#attribute-dsp-dataset-level),The level of processing associated with the dataset.,False,list like,DSP Dataset Level: Level 3 +DSP Number of Files,The number of files that will be uploaded as part of this dataset.,False,num,25 +DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,False,num,50000 +DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,False,num,12 +DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),False,num,16 GB +DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",True,date,2022-12-01 +DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,False,date,01/25/2023 +[DSP Dataset Grant Number](../valid_values/sharingPlans.md#attribute-dsp-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 +DSP Dataset Url,The url of where the dataset is or will be stored.,False,url,https://www.example.com/dataset/dsp1234 +[DSP Data Use Codes](../valid_values/sharingPlans.md#attribute-dsp-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ",False,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." +DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,False,regex match syn\\d+,"DSP IRB Form V2.0, 2020" +DSP Dataset Description,A text description of the files contained in this dataset.,False,str,"The DSP (Digital Signal Processing) Dataset is a collection of preprocessed data from audio signals. It includes various features extracted from these signals such as frequency components, amplitude modulation, spectral content, etc. The data can be used for training machine learning models in applications like speech recognition, music classification, sound source localization, and other audio processing tasks." +DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,False,str,"""/home/user/datasets/dsp_output""" diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index 5af9d46e..52d31dfb 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -1,14 +1,14 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, -Study Name,Name of the study,,,TRUE,,,,,str -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str -Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,FALSE,,,,,str -Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int -Study De-identification Method Type,General description of the de-identification method,"Manual , Semiautomatic , Automatic , Not applicable",,TRUE,,,,CDS/collection, -Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str -Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str -Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str -Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Reuse Statement, Study Data Use Codes, Study License",False,,,Grant View,,,"""Physics""" +Study Name,Name of the study,,,True,,,,,str,"""Effects of Diet and Exercise on Obesity""" +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,True,,,,,str,"""Analysis of Cardiovascular Response during Exercise""" +Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,True,,,,,list like,"Dr. John Smith, PhD in Neuroscience, University of California" +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,False,,,,,str,"""Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced.""" +Study_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,STUDY_2021_01Biology +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,True,,,,CDS/collection,int,5000 +Study De-identification Method Type,General description of the de-identification method,"Manual , Semiautomatic , Automatic , Not applicable",,True,,,,CDS/collection,,Manual +Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,False,,,,CDS/collection,str,"The study de-identification method description might be something like: ""All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable.""" +Study De-identification Method Software,Software that was used to de-identify the images (if used),,,False,,,,CDS/collection,str,"""Safe Harbor Method Software""" +Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,False,,,,CDS/collection,str,phs000424.v7.p2 +Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,False,,,,CDS/collection,,CC BY-NC 4.0 +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,False,,,,Data Use Ontology, list like,Study Data Use Codes: NCU diff --git a/modules/study/template.csv b/modules/study/template.csv new file mode 100644 index 00000000..3388db98 --- /dev/null +++ b/modules/study/template.csv @@ -0,0 +1,14 @@ +Attribute,Description,Required,Validation Rules,Examples +Study,Studies associated with a grant,False,_None_,"""Physics""" +Study Name,Name of the study,True,str,"""Effects of Diet and Exercise on Obesity""" +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",True,str,"""Analysis of Cardiovascular Response during Exercise""" +Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,True,list like,"Dr. John Smith, PhD in Neuroscience, University of California" +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",False,str,"""Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced.""" +Study_id,A unique primary key that enables record updates using schematic.,True,unique,STUDY_2021_01Biology +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,True,int,5000 +[Study De-identification Method Type](../valid_values/study.md#attribute-study-de-identification-method-type),General description of the de-identification method,True,_None_,Manual +Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,False,str,"The study de-identification method description might be something like: ""All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable.""" +Study De-identification Method Software,Software that was used to de-identify the images (if used),False,str,"""Safe Harbor Method Software""" +Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,False,str,phs000424.v7.p2 +[Study License](../valid_values/study.md#attribute-study-license),Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,False,_None_,CC BY-NC 4.0 +[Study Data Use Codes](../valid_values/study.md#attribute-study-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes",False, list like,Study Data Use Codes: NCU diff --git a/modules/templates/10xVisiumAuxiliaryFiles.csv b/modules/templates/10xVisiumAuxiliaryFiles.csv new file mode 100644 index 00000000..dda34c65 --- /dev/null +++ b/modules/templates/10xVisiumAuxiliaryFiles.csv @@ -0,0 +1,2 @@ +Component,Filename,File Format,Biospecimen Key,10xVisiumAuxiliaryFiles_id,10xVisiumRNALevel1 Key,10xVisiumRNALevel2 Key,10xVisiumRNALevel3 Key,10xVisiumRNALevel4 Key,Run ID,Visium File Type,Slide ID,Capture Area,Workflow Version,Workflow Link +10xVisiumAuxiliaryFiles,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel1.csv b/modules/templates/10xVisiumRNALevel1.csv new file mode 100644 index 00000000..21d042c3 --- /dev/null +++ b/modules/templates/10xVisiumRNALevel1.csv @@ -0,0 +1,2 @@ +Component,10xVisiumRNALevel1_id,Filename,Visium Run ID,File Format,Biospecimen Key,File Alias,NGS Read Indicator,Visium Spatial Read1,Visium Spatial Read2,Visium Spatial Library Construction Method,NGS Library Preparation Days from Index,NGS Sequencing Library Construction Days from Index,NGS End Bias,NGS Reverse Transcription Primer,NGS Sequencing Platform,Visium Capture Area,Protocol Link,Visium Slide Version,Visium Slide ID,Visium Image Re-orientation,Visium Permeabilization Time,NGS RIN,NGS DV200 +10xVisiumRNALevel1,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel2.csv b/modules/templates/10xVisiumRNALevel2.csv new file mode 100644 index 00000000..72459f5b --- /dev/null +++ b/modules/templates/10xVisiumRNALevel2.csv @@ -0,0 +1,2 @@ +Component,10xVisiumRNALevel2_id,Filename,File Format,Checksum,10xVisiumRNALevel1 Key,File Alias,Visium UMI Tag,Visium Whitelist Spatial Barcode File Link,Visium Spatial Barcode Tag,Visium Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Visium Run ID,Visium Capture Area +10xVisiumRNALevel2,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel3.csv b/modules/templates/10xVisiumRNALevel3.csv new file mode 100644 index 00000000..f0d7ad52 --- /dev/null +++ b/modules/templates/10xVisiumRNALevel3.csv @@ -0,0 +1,2 @@ +Component,10xVisiumRNALevel3_id,Filename,File Format,Biospecimen Key,10xVisiumRNALevel2 Key,10xVisiumAuxiliaryFiles Key,File Alias,Visium Run ID,Visium File Type,Workflow Version,Workflow Link,Visium Capture Area,Visium Spots under tissue,Visium Mean Reads per Spatial Spot,Visium Median Number Genes per Spatial Spot,NGS Sequencing Coverage,Visium Proportion Reads Mapped,Visium Proportion Reads Mapped to Transcriptome,Visium Median UMI Counts per Spot +10xVisiumRNALevel3,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel4.csv b/modules/templates/10xVisiumRNALevel4.csv new file mode 100644 index 00000000..519ef96c --- /dev/null +++ b/modules/templates/10xVisiumRNALevel4.csv @@ -0,0 +1,2 @@ +Component,10xVisiumRNALevel4_id,Filename,File Format,Biospecimen Key,10xVisiumRNALevel3 Key,Run ID,Workflow Version,Workflow Link,Visium Workflow Type,Visium Workflow Parameters Description +10xVisiumRNALevel4,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv b/modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv new file mode 100644 index 00000000..160d867b --- /dev/null +++ b/modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv @@ -0,0 +1,2 @@ +Component,Filename,File Format,Biospecimen Key,VisiumAux_id,VisiumRNALevel1 Key,VisiumRNALevel2 Key,VisiumRNALevel3 Key,VisiumRNALevel4 Key,Run ID,Visium File Type,Slide ID,Capture Area,Workflow Version,Workflow Link +10xVisiumSpatialTranscriptomics-AuxiliaryFiles,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv new file mode 100644 index 00000000..b54832cc --- /dev/null +++ b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv @@ -0,0 +1,2 @@ +Component,VisiumRNALevel1_id,Filename,Run ID,File Format,Biospecimen Key,File Alias,Read Indicator,Spatial Read1,Spatial Read2,Spatial Library Construction Method,Library Preparation Days from Index,Sequencing Library Construction Days from Index,End Bias,Reverse Transcription Primer,Sequencing Platform,Capture Area,Protocol Link,Slide Version,Slide ID,Image Re-orientation,Permeabilization Time,RIN,DV200 +10xVisiumSpatialTranscriptomics-RNA-seqLevel1,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv new file mode 100644 index 00000000..2a7015c4 --- /dev/null +++ b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv @@ -0,0 +1,2 @@ +Component,VisiumRNALevel2_id,Filename,File Format,Checksum,VisiumRNALevel1 Key,File Alias,UMI Tag,Whitelist Spatial Barcode File Link,Spatial Barcode Tag,Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Run ID,Capture Area +10xVisiumSpatialTranscriptomics-RNA-seqLevel2,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv new file mode 100644 index 00000000..d6fb50b2 --- /dev/null +++ b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv @@ -0,0 +1,2 @@ +Component,VisiumRNALevel3_id,Filename,File Format,Biospecimen Key,VisiumRNALevel2 Key,VisiumAux Key,File Alias,Run ID,Visium File Type,Workflow Version,Workflow Link,Capture Area,Spots under tissue,Mean Reads per Spatial Spot,Median Number Genes per Spatial Spot,Sequencing Saturation,Proportion Reads Mapped,Proportion Reads Mapped to Transcriptome,Median UMI Counts per Spot +10xVisiumSpatialTranscriptomics-RNA-seqLevel3,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv new file mode 100644 index 00000000..b33a5a1e --- /dev/null +++ b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv @@ -0,0 +1,2 @@ +Component,VisiumRNALevel4_id,Filename,File Format,Biospecimen Key,VisiumRNALevel3 Key,Run ID,Workflow Version,Workflow Link,Visium Workflow Type,Visium Workflow Parameters Description +10xVisiumSpatialTranscriptomics-RNA-seqLevel4,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/Biospecimen.csv b/modules/templates/Biospecimen.csv new file mode 100644 index 00000000..fb54a2c9 --- /dev/null +++ b/modules/templates/Biospecimen.csv @@ -0,0 +1,2 @@ +Component,Biospecimen_id,Study Key,Individual Key,Model Key,Parent Biospecimen Key,Biospecimen Type,Biospecimen Acquisition Method,Biospecimen Stain,Biospecimen Species,Biospecimen Sex,Biospecimen Age at Collection,Biospecimen Age at Collection Unit,Biospecimen Disease Type,Biospecimen Primary Site,Biospecimen Primary Diagnosis,Biospecimen Site of Origin,Biospecimen Tumor Subtype,Biospecimen Tumor Grade,Biospecimen Known Metastasis Sites,Biospecimen Tumor Morphology,Biospecimen Pathology,Biospecimen Composition,Biospecimen Preservation Method,Biospecimen Fixative,Biospecimen Embedding Medium,Biospecimen Anatomic Site,Biospecimen Site of Resection or Biopsy,Biospecimen Timepoint Type,Biospecimen Timepoint Offset,Biospecimen Collection Site,Biospecimen Therapeutic Agent,Biospecimen Last Known Disease Status,Biospecimen BioSample Identifier,Biospecimen Description +Biospecimen,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/DataDSP.csv b/modules/templates/DataDSP.csv new file mode 100644 index 00000000..cdd72926 --- /dev/null +++ b/modules/templates/DataDSP.csv @@ -0,0 +1,2 @@ +Component,DataDSP_id,Study Key,DatasetView Key,DSP Dataset Alias,DSP Dataset Name,DSP Dataset Url,DSP Dataset Assay,DSP Dataset Level,DSP Dataset Species,DSP Dataset Tumor Type,DSP Dataset Tissue,DSP Dataset File Formats,DSP Number of Files,DSP Number of Samples,DSP Number of Participants,DSP Storage Size,DSP Dataset Description,DSP Planned Upload Date,DSP Planned Release Date,DSP Data Use Codes,DSP IRB Form,DSP Dataset Destination +DataDSP,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/DatasetView.csv b/modules/templates/DatasetView.csv new file mode 100644 index 00000000..fe709ad5 --- /dev/null +++ b/modules/templates/DatasetView.csv @@ -0,0 +1,2 @@ +Component,DatasetView_id,Study Key,PublicationView Key,Dataset Name,Dataset Alias,Dataset Description,Dataset Design,Dataset Assay,Dataset Species,Dataset Tumor Type,Dataset Tissue,Dataset Url,Dataset File Formats,Data Use Codes +DatasetView,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/EducationalResource.csv b/modules/templates/EducationalResource.csv new file mode 100644 index 00000000..73b11839 --- /dev/null +++ b/modules/templates/EducationalResource.csv @@ -0,0 +1,2 @@ +Component,EducationalResource_id,Resource Title,Resource Link,Resource Topic,Resource Activity Type,Resource Primary Format,Resource Intended Use,Resource Primary Audience,Resource Educational Level,Resource Description,Resource Origin Institution,Resource Language,Resource Contributors,Resource Grant Number,Resource Secondary Topic,Resource License,Resource Use Requirements,Resource Alias,Resource Internal Identifier,Resource Media Accessibility,Resource Access Hazard,Resource Dataset Alias,Resource Tool Link +EducationalResource,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/FileView.csv b/modules/templates/FileView.csv new file mode 100644 index 00000000..92ac2521 --- /dev/null +++ b/modules/templates/FileView.csv @@ -0,0 +1,2 @@ +Component,FileView_id,Biospecimen Key,Study Key,DatasetView Key,Filename,File Alias,File Description,File Design,File Level,File Assay,File Species,File Tumor Type,File Tissue,File Url,File Format,Data Use Codes,File Longitudinal Group,File Longitudinal Event Type,File Longitudinal Sequence Identifier,File Longitudinal Time Elapsed Unit,File Longitudinal Sequential Time Elapsed,File Longitudinal Total Time Elapsed +FileView,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/GrantView.csv b/modules/templates/GrantView.csv new file mode 100644 index 00000000..d19386e1 --- /dev/null +++ b/modules/templates/GrantView.csv @@ -0,0 +1,2 @@ +Component,GrantView_id,Grant Name,Grant Number,Grant Abstract,Grant Type,Grant Theme Name,Grant Institution Name,Grant Institution Alias,Grant Investigator,Grant Consortium Name,Grant Start Date,NIH RePORTER Link,Duration of Funding,Embargo End Date,Grant Synapse Team,Grant Synapse Project +GrantView,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingChannel.csv b/modules/templates/ImagingChannel.csv new file mode 100644 index 00000000..67573f9c --- /dev/null +++ b/modules/templates/ImagingChannel.csv @@ -0,0 +1,2 @@ +Component,ImagingChannel_id,Study Key,Channel Identifier,Channel Name,Channel Passed QC,Channel Cycle Number,Channel Sub-cycle Number,Channel Antibody Role,Channel Target Name,Channel Antibody Name,Channel Resource ID,Channel Fluorophore,Channel Antibody Clone,Channel Antibody Lot,Channel Antibody Vendor,Channel Antibody Catalog Number,Channel Excitation Wavelength,Channel Emission Wavelength,Channel Excitation Bandwidth,Channel Emission Bandwidth,Channel Metal Symbol,Channel Metal Isotope,Channel Oligo Barcode Upper Strand,Channel Oligo Barcode Lower Strand,Channel Probe Dilution Ratio,Channel Probe Concentration +ImagingChannel,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel1.csv b/modules/templates/ImagingLevel1.csv new file mode 100644 index 00000000..944966f8 --- /dev/null +++ b/modules/templates/ImagingLevel1.csv @@ -0,0 +1,2 @@ +Component,ImagingLevel1_id,Filename,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,ImagingChannel Key +ImagingLevel1,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel2.csv b/modules/templates/ImagingLevel2.csv new file mode 100644 index 00000000..8f20521c --- /dev/null +++ b/modules/templates/ImagingLevel2.csv @@ -0,0 +1,2 @@ +Component,ImagingLevel2_id,Filename,ImagingLevel1 Key,ImagingChannel Key,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,Image Objective,Image Nominal Magnification,Image Lense Aperture,Image Working Distance,Image Working Distance Unit,Image Immersion Type,Image Pyramidal,Image Z stack,Image Timeseries,Image FOV Index,Image FOV Size X,Image FOV Size X Unit,Image FOV Size Y,Image FOV Size Y Unit,Image Frame Averaging,Image Identifier,Image Dimension Order,Image Physical Size X,Image Physical Size X Unit,Image Physical Size Y,Image Physical Size Y Unit,Image Physical Size Z,Image Physical Size Z Unit,Image Pixels BigEndian,Image Plane Count,Image Channel Size,Image Number of Timepoints,Image X Pixels,Image Y Pixels,Image Z Pixels,Image Pixel Type +ImagingLevel2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel3Image.csv b/modules/templates/ImagingLevel3Image.csv new file mode 100644 index 00000000..c7452c5d --- /dev/null +++ b/modules/templates/ImagingLevel3Image.csv @@ -0,0 +1,2 @@ +Component,ImagingLevel3Image_id,Filename,ImagingChannel Key,ImagingLevel2 Key,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,Image Objective,Image Nominal Magnification,Image Lense Aperture,Image Working Distance,Image Immersion Type,Image Pyramidal,Image Z stack,Image Timeseries,Image FOV Index,Image FOV Size X,Image FOV Size Y,Image FOV Size Y Unit,Image Frame Averaging +ImagingLevel3Image,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel3Segments.csv b/modules/templates/ImagingLevel3Segments.csv new file mode 100644 index 00000000..bf4bf6f3 --- /dev/null +++ b/modules/templates/ImagingLevel3Segments.csv @@ -0,0 +1,2 @@ +Component,ImagingLevel3Segments_id,Filename,ImagingLevel2 Key,ImagingLevel3Image Key,Image Segmentation Data Type,Image Parameter file,Software and Version,Image Object Class,Image Object Class Description,Image Number of Objects +ImagingLevel3Segments,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel4.csv b/modules/templates/ImagingLevel4.csv new file mode 100644 index 00000000..74f9857a --- /dev/null +++ b/modules/templates/ImagingLevel4.csv @@ -0,0 +1,2 @@ +Component,ImagingLevel4_id,Filename,ImagingLevel2 Key,ImagingLevel3Image Key,ImagingLevel3Segments Key,Image Parameter file,Image Software,Image Number of Objects,Image Number of Features,Image Object Class,Image Summary Statistic +ImagingLevel4,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/Individual.csv b/modules/templates/Individual.csv new file mode 100644 index 00000000..abea9720 --- /dev/null +++ b/modules/templates/Individual.csv @@ -0,0 +1,2 @@ +Component,Individual_id,Study Key,Individual dbGaP Subject Id,Individual Sex,Individual Gender,Individual Age at Diagnosis,Individual Disease Type,Individual Primary Diagnosis,Individual Primary Site,Individual Primary Tumor Stage,Individual Site of Origin,Individual Tumor Subtype,Individual Tumor Grade,Individual Tumor Lymph Node Stage,Individual Known Metastasis Sites,Individual Metastasis Stage,Individual Treatment Type,Individual Therapeutic Agent,Individual Days to Treatment,Individual Treatment Outcome,Individual Days to Last Followup,Individual Recurrence Status,Individual Days To Recurrence,Individual Days to Last Known Disease Status,Individual Last Known Disease Status +Individual,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/Model.csv b/modules/templates/Model.csv new file mode 100644 index 00000000..b00dcc52 --- /dev/null +++ b/modules/templates/Model.csv @@ -0,0 +1,2 @@ +Component,Model_id,Study Key,Individual Key,Model Age,Model Age Unit,Model Sex,Model Primary Diagnosis,Model Site of Origin,Model Tumor Type,Model Tumor Subtype,Model Species,Model Type,Model Method,Model Source,Model Acquisition Type,Model Graft Source,Model Genotype,Model Treatment Type,Model Therapeutic Agent +Model,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMXROISegmentAnnotation.csv b/modules/templates/NanoStringGeoMXROISegmentAnnotation.csv new file mode 100644 index 00000000..317d5327 --- /dev/null +++ b/modules/templates/NanoStringGeoMXROISegmentAnnotation.csv @@ -0,0 +1,2 @@ +Component,NanoStringGeoMXROISegmentAnnotation_id,Biospecimen Key,GeoMx Scan name,GeoMx ROI Name,GeoMx AOI Name,GeoMx Tags,GeoMx ROI X Coordinate,GeoMx ROI Y Coordinate,GeoMx AOI X Coordinate,GeoMx AOI Y Coordinate,GeoMx QC status,GeoMx Scan Height,GeoMx Scan Width,GeoMx Scan Offset X,GeoMx Scan Offset Y,GeoMx Binding Density,GeoMx Positive norm factor,GeoMx Surface area,GeoMx Nuclei count,GeoMx Tissue Stain,GeoMx Slide name,NGS Raw reads,NGS Stitched reads,NGS Aligned reads,NGS Deduplicated reads,NGS Trimmed reads,NGS Sequencing Coverage,NGS MapQ30,GeoMx Negative count mean,GeoMx No Template Control count,GeoMx Excluded Outlier Probes,GeoMx Limit of Quantification +NanoStringGeoMXROISegmentAnnotation,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxAuxiliaryFiles.csv b/modules/templates/NanoStringGeoMxAuxiliaryFiles.csv new file mode 100644 index 00000000..e16193f5 --- /dev/null +++ b/modules/templates/NanoStringGeoMxAuxiliaryFiles.csv @@ -0,0 +1,2 @@ +Component,NanoStringGeoMxAuxiliaryFiles_id,Synapse ID of GeoMx DSP ROI Segment Annotation File,Synapse ID of GeoMx DSP PKC File,Synapse ID of GeoMx Lab Worksheet File,Synapse ID of GeoMx DSP Config File +NanoStringGeoMxAuxiliaryFiles,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPImaging.csv b/modules/templates/NanoStringGeoMxDSPImaging.csv new file mode 100644 index 00000000..695c29ff --- /dev/null +++ b/modules/templates/NanoStringGeoMxDSPImaging.csv @@ -0,0 +1,2 @@ +Component,NanoStringGeoMxDSPImaging_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxDSPLevel2 Key,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,GeoMx Imaging Channel Names +NanoStringGeoMxDSPImaging,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPImagingLevel2.csv b/modules/templates/NanoStringGeoMxDSPImagingLevel2.csv new file mode 100644 index 00000000..093b7c01 --- /dev/null +++ b/modules/templates/NanoStringGeoMxDSPImagingLevel2.csv @@ -0,0 +1,2 @@ +Component,NanoStringGeoMxDSPImagingLevel2_id,Project Key,Study Key,Filename,File Format,Parent Biospecimen ID,Synapse ID of Data File,Synapse ID of GeoMx ROI Segment Annotation File,ROI Name,AOI Name,Imaging Channel Names +NanoStringGeoMxDSPImagingLevel2,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPLevel1.csv b/modules/templates/NanoStringGeoMxDSPLevel1.csv new file mode 100644 index 00000000..5bf23135 --- /dev/null +++ b/modules/templates/NanoStringGeoMxDSPLevel1.csv @@ -0,0 +1,2 @@ +Component,NanoStringGeoMxDSPLevel1_id,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,Filename,GeoMx DSP Assay Type,NGS Target Sequencing Depth,NGS Read Length,NGS Sequencing Platform,NGS Library Selection Method,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version +NanoStringGeoMxDSPLevel1,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPLevel2.csv b/modules/templates/NanoStringGeoMxDSPLevel2.csv new file mode 100644 index 00000000..4711f36f --- /dev/null +++ b/modules/templates/NanoStringGeoMxDSPLevel2.csv @@ -0,0 +1,2 @@ +Component,NanoStringGeoMxDSPLevel2_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,GeoMx DSP Assay Type,Software and Version,Genomic Reference,NGS Sequencing Platform,NGS Library Selection Method,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version +NanoStringGeoMxDSPLevel2,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPLevel3.csv b/modules/templates/NanoStringGeoMxDSPLevel3.csv new file mode 100644 index 00000000..38b6e0d2 --- /dev/null +++ b/modules/templates/NanoStringGeoMxDSPLevel3.csv @@ -0,0 +1,2 @@ +Component,NanoStringGeoMxDSPLevel3_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxDSPLevel2 Key,NanoStringGeoMxAuxiliaryFiles Key,NGS Unique Probe Count,NGS Unique Target Count,NGS Matrix Type,Workflow Type,Workflow Parameter Description,Workflow Link +NanoStringGeoMxDSPLevel3,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/PersonView.csv b/modules/templates/PersonView.csv new file mode 100644 index 00000000..3c426a2b --- /dev/null +++ b/modules/templates/PersonView.csv @@ -0,0 +1,2 @@ +Component,PersonView_id,GrantView Key,Person Consortium Name,Name,Alternative Names,Email,Url,Orcid Id,Synapse Profile Id,Last Known Institution,Working Group Participation,Chair Roles,Consent For Portal Display,Portal Display,Person Publications,Person Datasets,Person Tools,Person Educational Resources +PersonView,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ProjectView.csv b/modules/templates/ProjectView.csv new file mode 100644 index 00000000..fe5fb134 --- /dev/null +++ b/modules/templates/ProjectView.csv @@ -0,0 +1,2 @@ +Component,ProjectView_id,GrantView Key,Project Name,Project Type,Project Description,Project Investigator +ProjectView,,,,,, \ No newline at end of file diff --git a/modules/templates/PublicationView.csv b/modules/templates/PublicationView.csv new file mode 100644 index 00000000..fb16391a --- /dev/null +++ b/modules/templates/PublicationView.csv @@ -0,0 +1,2 @@ +Component,PublicationView_id,Study Key,Publication Doi,Publication Journal,Pubmed Id,Pubmed Url,Publication Title,Publication Year,Publication Keywords,Publication Authors,Publication Abstract,Publication Assay,Publication Tumor Type,Publication Tissue,Publication Accessibility +PublicationView,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/SequencingLevel1.csv b/modules/templates/SequencingLevel1.csv new file mode 100644 index 00000000..5a4e3874 --- /dev/null +++ b/modules/templates/SequencingLevel1.csv @@ -0,0 +1,2 @@ +Component,SequencingLevel1_id,Filename,NGS Library Strategy,NGS Library Source,NGS Library Selection Method,NGS Library Layout,NGS Sequencing Platform,NGS Sequencing Design Description,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version,NGS Read Indicator,NGS Library Preparation Days from Index,NGS Sequencing Library Construction Days from Index +SequencingLevel1,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/SequencingLevel2.csv b/modules/templates/SequencingLevel2.csv new file mode 100644 index 00000000..e71a04bd --- /dev/null +++ b/modules/templates/SequencingLevel2.csv @@ -0,0 +1,2 @@ +Component,SequencingLevel2_id,SequencingLevel1 Key,Filename,NGS Library Strategy,NGS Library Source,NGS Library Selection Method,NGS Library Layout,NGS Sequencing Platform,NGS Sequencing Design Description,NGS Raw reads,NGS Stitched reads,NGS Aligned reads,NGS Deduplicated reads,NGS Trimmed reads,NGS MapQ30,NGS Unique Bases,NGS Read Length,NGS Sequencing Coverage,Genomic Reference,Software and Version +SequencingLevel2,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/SequencingLevel3.csv b/modules/templates/SequencingLevel3.csv new file mode 100644 index 00000000..053d8141 --- /dev/null +++ b/modules/templates/SequencingLevel3.csv @@ -0,0 +1,2 @@ +Component,SequencingLevel3_id,SequencingLevel2 Key,Filename,NGS Unique Probe Count,NGS Unique Target Count,NGS Matrix Type,Software and Version +SequencingLevel3,,,,,,, \ No newline at end of file diff --git a/modules/templates/Study.csv b/modules/templates/Study.csv new file mode 100644 index 00000000..7abf7c45 --- /dev/null +++ b/modules/templates/Study.csv @@ -0,0 +1,2 @@ +Component,Study_id,GrantView Key,ProjectView Key,Study dbGaP Accession Id,Study Name,Study Description,Study Investigator,PersonView Key,Study Number of Participants,Study De-identification Method Type,Study De-identification Method Description,Study De-identification Method Software,Study Reuse Statement,Study Data Use Codes,Study License +Study,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ToolView.csv b/modules/templates/ToolView.csv new file mode 100644 index 00000000..644f2044 --- /dev/null +++ b/modules/templates/ToolView.csv @@ -0,0 +1,2 @@ +Component,ToolView_id,Study key,DatasetView Key,PublicationView Key,Tool Name,Tool Description,Tool Homepage,Tool Version,Tool Operation,Tool Input Data,Tool Output Data,Tool Input Format,Tool Output Format,Tool Function Note,Tool Cmd,Tool Type,Tool Topic,Tool Operating System,Tool Language,Tool License,Tool Cost,Tool Accessibility,Tool Download Url,Tool Download Type,Tool Download Note,Tool Download Version,Tool Documentation Url,Tool Documentation Type,Tool Documentation Note,Tool Link Url,Tool Link Type,Tool Link Note,Tool Date Last Modified,Tool Release Date,Tool Package Dependencies,Tool Package Dependencies Present,Tool Compute Requirements,Tool Entity Name,Tool Entity Type,Tool Entity Role +ToolView,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index 3afbc3d2..c02f0dd2 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -1,42 +1,46 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,FALSE,,,,biotoolsschema, -Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",,,FALSE,,,,biotoolsschema, -Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,FALSE,,,,schema.org,"list like, url" -Tool Cost,Monetary cost of acquiring the software.,"Commercial, Free of Charge, Free of Charge (With Restrictions)",,FALSE,,,,biotoolsschema, -Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",,,FALSE,,,,schema.org,date -Tool Description,Textual description of the tool.,,,TRUE,,,,biotoolsschema, -Tool Documentation Note,Comment about the documentation.,,,FALSE,,,,biotoolsschema, -Tool Documentation Type,"Type of documentation that is linked to. Multiple values permitted, comma separated.","API Documentation, Citation Instructions, Code of Conduct, Command-Line Options, Contributions Policy, FAQ, General, Governance, Installation Instructions, Other, Quick Start Guide, Release Notes, Terms of Use, Training Material, User Manual",,FALSE,,,,biotoolsschema,list like -Tool Documentation Url,Link to documentation on the web for the tool.,,,FALSE,,,,biotoolsschema, -Tool Download Note,Comment about the download.,,,FALSE,,,,biotoolsschema, -Tool Download Type,"The type of data, information, or system that is obtained when the link is resolved.","API Specification, Binaries, Biological Data, Command-Line Specification, Container File, Downloads Page, Icon, Other, Screenshot, Software Package, Source Code, Test Data, Test Script, Tool Wrapper (CWL), Tool Wrapper (Galaxy), Tool Wrapper (Taverna), Tool wrapper (Other), VM Image",,FALSE,,,,biotoolsschema, -Tool Download Url,Link to download (or repo providing a download) for the software.,,,FALSE,,,,biotoolsschema, -Tool Download Version,Version information (typically a version number) of the software applicable to this download.,,,FALSE,,,,biotoolsschema, -Tool Entity Name,Name of the entities that may be credited,,,FALSE,,,,,list like -Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,TRUE,,,,biotoolsschema,list like -Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,TRUE,,,,biotoolsschema,list like -Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,FALSE,,,,biotoolsschema, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,TRUE,,,,biotoolsschema,url -Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like -Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like -Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,FALSE,,,,biotoolsschema,list like -Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,biotoolsschema,list like -Tool Link Note,Comment about the link.,,,FALSE,,,,biotoolsschema, -Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,FALSE,,,,biotoolsschema,list like -Tool Link Url,A link of some relevance to the software (URL).,,,FALSE,,,,biotoolsschema, -Tool Name,Canonical tool name provided by the tool developer or service provider.,,,TRUE,,,,biotoolsschema,unique -Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,FALSE,,,,biotoolsschema,list like -Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,TRUE,,,,biotoolsschema,list like -Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like -Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like -Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,FALSE,,,,CWL,list like -Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,TRUE,,,,CWL, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int -Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,TRUE,,,,schema.org,date -Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,FALSE,,,,biotoolsschema,list like -Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,FALSE,,,,biotoolsschema,list like -Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,FALSE,,,,biotoolsschema, -Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, Study key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, -ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples +Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,False,,,,biotoolsschema,,"Tool Accessibility: Open Access (With Restrictions) - The company's data analytics tool is open to all employees, but access to certain sensitive information within the tool is restricted to upper management." +Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",,,False,,,,biotoolsschema,,"""export GIT_TRACE=1""" +Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,False,,,,schema.org,"list like, url","CPU: Intel i7, RAM: 16GB, Hard Disk Space: 500GB, Operating System: Windows 10, GPU: Nvidia GTX 1060 6GB, Internet Connection: Broadband." +Tool Cost,Monetary cost of acquiring the software.,"Commercial, Free of Charge, Free of Charge (With Restrictions)",,False,,,,biotoolsschema,,Commercial +Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",,,False,,,,schema.org,date,11/04/2021 15:30:45 +Tool Description,Textual description of the tool.,,,True,,,,biotoolsschema,,"This powerful electric drill comes with a 10 amp motor, providing high performance in heavy-duty applications. This tool possesses a 1/2-inch all-metal, single-sleeve, ratcheting keyless chuck with automatic spindle lock that provides greater bit retention and tool-free convenience. Additionally, it is designed with a soft grip handle and two-finger trigger for increased comfort and greater control. This drill also features a 360-degree locking side handle with soft grip for increased maneuverability and control." +Tool Documentation Note,Comment about the documentation.,,,False,,,,biotoolsschema,,"""This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades.""" +Tool Documentation Type,"Type of documentation that is linked to. Multiple values permitted, comma separated.","API Documentation, Citation Instructions, Code of Conduct, Command-Line Options, Contributions Policy, FAQ, General, Governance, Installation Instructions, Other, Quick Start Guide, Release Notes, Terms of Use, Training Material, User Manual",,False,,,,biotoolsschema,list like,API Documentation +Tool Documentation Url,Link to documentation on the web for the tool.,,,False,,,,biotoolsschema,,"""https://docs.google.com/spreadsheets/""" +Tool Download Note,Comment about the download.,,,False,,,,biotoolsschema,,"""Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software.""" +Tool Download Type,"The type of data, information, or system that is obtained when the link is resolved.","API Specification, Binaries, Biological Data, Command-Line Specification, Container File, Downloads Page, Icon, Other, Screenshot, Software Package, Source Code, Test Data, Test Script, Tool Wrapper (CWL), Tool Wrapper (Galaxy), Tool Wrapper (Taverna), Tool wrapper (Other), VM Image",,False,,,,biotoolsschema,,API Specification +Tool Download Url,Link to download (or repo providing a download) for the software.,,,False,,,,biotoolsschema,,https://example.com/tool-download/version2.0 +Tool Download Version,Version information (typically a version number) of the software applicable to this download.,,,False,,,,biotoolsschema,,1.0.3 +Tool Entity Name,Name of the entities that may be credited,,,False,,,,,list like,Hammer +Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,True,,,,biotoolsschema,list like,"For an open-source software project, different individuals or teams could take on various roles: the 'Developer' builds and enhances the software, the 'Maintainer' ensures it is debugged and up to date, the 'Provider' supplies the software to users, the 'Documentor' creates guides and manuals, 'Contributors' improve the software, the 'Support' team assists with technical issues, and the 'Primary Contact' handles overall inquiries." +Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,True,,,,biotoolsschema,list like,Person +Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,False,,,,biotoolsschema,,"""The tool is primarily used for cutting hard materials, but can also be utilized for shaping, smoothing, and finishing tasks depending on the type of blade or attachment used.""" +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209975 +Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,True,,,,biotoolsschema,url,https://www.microsoft.com/en-us/windows/ +Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,"Attribute: Tool Input Data +Example: DNA Sequence" +Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,"Attribute: Tool Input Format +Example: CSV" +Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,False,,,,biotoolsschema,list like,Tool Language: Python +Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,biotoolsschema,list like,Tool License: Apache-2.0 +Tool Link Note,Comment about the link.,,,False,,,,biotoolsschema,,"""This tool cannot be accessed without a valid institutional login.""" +Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,False,,,,biotoolsschema,list like,Tool Link Type: Social Media +Tool Link Url,A link of some relevance to the software (URL).,,,False,,,,biotoolsschema,,https://www.example.com/tool-info.html +Tool Name,Canonical tool name provided by the tool developer or service provider.,,,True,,,,biotoolsschema,unique,Adobe Photoshop +Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,False,,,,biotoolsschema,list like,Linux +Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,True,,,,biotoolsschema,list like,"Attribute: Tool Operation +Example: DNA Barcoding" +Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,Gene ID (NCBI): NM_001282392.1 +Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,"Attribute: Tool Output Format +Example: FASTQ" +Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,False,,,,CWL,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." +Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,True,,,,CWL,,Tool Package Dependencies Present: True +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209975 +Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,False,,,,,int,26760201 +Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,True,,,,schema.org,date,"January 5, 2022" +Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,False,,,,biotoolsschema,list like,Tool Topic: Bioinformatics +Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,False,,,,biotoolsschema,list like,Command-Line Tool +Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,False,,,,biotoolsschema,,3.2.1 +Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, Study key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",False,,,Study,,,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." +ToolView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,ToolView_6749 diff --git a/modules/tool/template.csv b/modules/tool/template.csv new file mode 100644 index 00000000..34c1edbc --- /dev/null +++ b/modules/tool/template.csv @@ -0,0 +1,46 @@ +Attribute,Description,Required,Validation Rules,Examples +[Tool Accessibility](../valid_values/tool.md#attribute-tool-accessibility),Whether there are non-monetary restrictions on accessing an online service.,False,_None_,"Tool Accessibility: Open Access (With Restrictions) - The company's data analytics tool is open to all employees, but access to certain sensitive information within the tool is restricted to upper management." +Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",False,_None_,"""export GIT_TRACE=1""" +Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",False,"list like, url","CPU: Intel i7, RAM: 16GB, Hard Disk Space: 500GB, Operating System: Windows 10, GPU: Nvidia GTX 1060 6GB, Internet Connection: Broadband." +[Tool Cost](../valid_values/tool.md#attribute-tool-cost),Monetary cost of acquiring the software.,False,_None_,Commercial +Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",False,date,11/04/2021 15:30:45 +Tool Description,Textual description of the tool.,True,_None_,"This powerful electric drill comes with a 10 amp motor, providing high performance in heavy-duty applications. This tool possesses a 1/2-inch all-metal, single-sleeve, ratcheting keyless chuck with automatic spindle lock that provides greater bit retention and tool-free convenience. Additionally, it is designed with a soft grip handle and two-finger trigger for increased comfort and greater control. This drill also features a 360-degree locking side handle with soft grip for increased maneuverability and control." +Tool Documentation Note,Comment about the documentation.,False,_None_,"""This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades.""" +[Tool Documentation Type](../valid_values/tool.md#attribute-tool-documentation-type),"Type of documentation that is linked to. Multiple values permitted, comma separated.",False,list like,API Documentation +Tool Documentation Url,Link to documentation on the web for the tool.,False,_None_,"""https://docs.google.com/spreadsheets/""" +Tool Download Note,Comment about the download.,False,_None_,"""Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software.""" +[Tool Download Type](../valid_values/tool.md#attribute-tool-download-type),"The type of data, information, or system that is obtained when the link is resolved.",False,_None_,API Specification +Tool Download Url,Link to download (or repo providing a download) for the software.,False,_None_,https://example.com/tool-download/version2.0 +Tool Download Version,Version information (typically a version number) of the software applicable to this download.,False,_None_,1.0.3 +Tool Entity Name,Name of the entities that may be credited,False,list like,Hammer +[Tool Entity Role](../valid_values/tool.md#attribute-tool-entity-role),"Role performed by entity that is credited, e.g. β€œDeveloper”",True,list like,"For an open-source software project, different individuals or teams could take on various roles: the 'Developer' builds and enhances the software, the 'Maintainer' ensures it is debugged and up to date, the 'Provider' supplies the software to users, the 'Documentor' creates guides and manuals, 'Contributors' improve the software, the 'Support' team assists with technical issues, and the 'Primary Contact' handles overall inquiries." +[Tool Entity Type](../valid_values/tool.md#attribute-tool-entity-type),"Types of entities that may be credited, e.g. β€˜Person’.",True,list like,Person +Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",False,_None_,"""The tool is primarily used for cutting hard materials, but can also be utilized for shaping, smoothing, and finishing tasks depending on the type of blade or attachment used.""" +[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 +Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",True,url,https://www.microsoft.com/en-us/windows/ +[Tool Input Data](../valid_values/tool.md#attribute-tool-input-data),"Type of primary input data. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Input Data +Example: DNA Sequence" +[Tool Input Format](../valid_values/tool.md#attribute-tool-input-format),"Allowed format(s) of the input data. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Input Format +Example: CSV" +[Tool Language](../valid_values/tool.md#attribute-tool-language),"Name of programming language the software source code was written in. Multiple values permitted, comma separated.",False,list like,Tool Language: Python +[Tool License](../valid_values/tool.md#attribute-tool-license),"Software or data usage license. Multiple values permitted, comma separated.",False,list like,Tool License: Apache-2.0 +Tool Link Note,Comment about the link.,False,_None_,"""This tool cannot be accessed without a valid institutional login.""" +[Tool Link Type](../valid_values/tool.md#attribute-tool-link-type),"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.",False,list like,Tool Link Type: Social Media +Tool Link Url,A link of some relevance to the software (URL).,False,_None_,https://www.example.com/tool-info.html +Tool Name,Canonical tool name provided by the tool developer or service provider.,True,unique,Adobe Photoshop +[Tool Operating System](../valid_values/tool.md#attribute-tool-operating-system),"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.",False,list like,Linux +[Tool Operation](../valid_values/tool.md#attribute-tool-operation),"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Operation +Example: DNA Barcoding" +[Tool Output Data](../valid_values/tool.md#attribute-tool-output-data),"Type of primary output data. Multiple values permitted, comma separated.",True,list like,Gene ID (NCBI): NM_001282392.1 +[Tool Output Format](../valid_values/tool.md#attribute-tool-output-format),"Allowed format(s) of the output data. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Output Format +Example: FASTQ" +Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",False,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." +[Tool Package Dependencies Present](../valid_values/tool.md#attribute-tool-package-dependencies-present),Indicates whether the required package dependencies for tool are present.,True,_None_,Tool Package Dependencies Present: True +[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 +Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,False,int,26760201 +Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,True,date,"January 5, 2022" +[Tool Topic](../valid_values/tool.md#attribute-tool-topic),"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.",False,list like,Tool Topic: Bioinformatics +[Tool Type](../valid_values/tool.md#attribute-tool-type),"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.",False,list like,Command-Line Tool +Tool Version,Version information (typically a version number) of the software applicable to this entry.,False,_None_,3.2.1 +Tool View,The denormalized manifest for tool submission.,False,_None_,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." +ToolView_id,A unique primary key that enables record updates using schematic.,True,unique,ToolView_6749 diff --git a/scripts/hooks.py b/scripts/hooks.py index 3f8df657..dc663993 100644 --- a/scripts/hooks.py +++ b/scripts/hooks.py @@ -17,7 +17,8 @@ 'Attribute', 'Description', 'Required', - 'Validation Rules' + 'Validation Rules', + 'Examples' ] def on_pre_build(config, **kwargs) -> None: From 2aaecb6a6970362941f1f5b49ca06a3cd47502bd Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Wed, 5 Feb 2025 15:57:23 -0600 Subject: [PATCH 002/106] Update the csv files with examples and update pages to contain overviews and examples --- docs/assets/custom.css | 10 ---------- mkdocs.yml | 3 --- 2 files changed, 13 deletions(-) delete mode 100644 docs/assets/custom.css diff --git a/docs/assets/custom.css b/docs/assets/custom.css deleted file mode 100644 index 6b439597..00000000 --- a/docs/assets/custom.css +++ /dev/null @@ -1,10 +0,0 @@ -a[title] { - position: relative; - color: #0056b3; - text-decoration: none; - } - - a[title]:hover { - text-decoration: underline; - } - \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index 0650c485..901da455 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -80,9 +80,6 @@ plugins: hooks: - scripts/hooks.py -extra_css: - - assets/custom.css - markdown_extensions: - admonition - pymdownx.details From 485033adbefa6210601bac4a1a43683d71e93a0c Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Wed, 5 Feb 2025 15:58:54 -0600 Subject: [PATCH 003/106] Update the csv files with examples and update pages to contain overviews and examples --- modules/templates/10xVisiumAuxiliaryFiles.csv | 2 -- modules/templates/10xVisiumRNALevel1.csv | 2 -- modules/templates/10xVisiumRNALevel2.csv | 2 -- modules/templates/10xVisiumRNALevel3.csv | 2 -- modules/templates/10xVisiumRNALevel4.csv | 2 -- .../10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv | 2 -- .../templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv | 2 -- .../templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv | 2 -- .../templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv | 2 -- .../templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv | 2 -- modules/templates/Biospecimen.csv | 2 -- modules/templates/DataDSP.csv | 2 -- modules/templates/DatasetView.csv | 2 -- modules/templates/EducationalResource.csv | 2 -- modules/templates/FileView.csv | 2 -- modules/templates/GrantView.csv | 2 -- modules/templates/ImagingChannel.csv | 2 -- modules/templates/ImagingLevel1.csv | 2 -- modules/templates/ImagingLevel2.csv | 2 -- modules/templates/ImagingLevel3Image.csv | 2 -- modules/templates/ImagingLevel3Segments.csv | 2 -- modules/templates/ImagingLevel4.csv | 2 -- modules/templates/Individual.csv | 2 -- modules/templates/Model.csv | 2 -- modules/templates/NanoStringGeoMXROISegmentAnnotation.csv | 2 -- modules/templates/NanoStringGeoMxAuxiliaryFiles.csv | 2 -- modules/templates/NanoStringGeoMxDSPImaging.csv | 2 -- modules/templates/NanoStringGeoMxDSPImagingLevel2.csv | 2 -- modules/templates/NanoStringGeoMxDSPLevel1.csv | 2 -- modules/templates/NanoStringGeoMxDSPLevel2.csv | 2 -- modules/templates/NanoStringGeoMxDSPLevel3.csv | 2 -- modules/templates/PersonView.csv | 2 -- modules/templates/ProjectView.csv | 2 -- modules/templates/PublicationView.csv | 2 -- modules/templates/SequencingLevel1.csv | 2 -- modules/templates/SequencingLevel2.csv | 2 -- modules/templates/SequencingLevel3.csv | 2 -- modules/templates/Study.csv | 2 -- modules/templates/ToolView.csv | 2 -- 39 files changed, 78 deletions(-) delete mode 100644 modules/templates/10xVisiumAuxiliaryFiles.csv delete mode 100644 modules/templates/10xVisiumRNALevel1.csv delete mode 100644 modules/templates/10xVisiumRNALevel2.csv delete mode 100644 modules/templates/10xVisiumRNALevel3.csv delete mode 100644 modules/templates/10xVisiumRNALevel4.csv delete mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv delete mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv delete mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv delete mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv delete mode 100644 modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv delete mode 100644 modules/templates/Biospecimen.csv delete mode 100644 modules/templates/DataDSP.csv delete mode 100644 modules/templates/DatasetView.csv delete mode 100644 modules/templates/EducationalResource.csv delete mode 100644 modules/templates/FileView.csv delete mode 100644 modules/templates/GrantView.csv delete mode 100644 modules/templates/ImagingChannel.csv delete mode 100644 modules/templates/ImagingLevel1.csv delete mode 100644 modules/templates/ImagingLevel2.csv delete mode 100644 modules/templates/ImagingLevel3Image.csv delete mode 100644 modules/templates/ImagingLevel3Segments.csv delete mode 100644 modules/templates/ImagingLevel4.csv delete mode 100644 modules/templates/Individual.csv delete mode 100644 modules/templates/Model.csv delete mode 100644 modules/templates/NanoStringGeoMXROISegmentAnnotation.csv delete mode 100644 modules/templates/NanoStringGeoMxAuxiliaryFiles.csv delete mode 100644 modules/templates/NanoStringGeoMxDSPImaging.csv delete mode 100644 modules/templates/NanoStringGeoMxDSPImagingLevel2.csv delete mode 100644 modules/templates/NanoStringGeoMxDSPLevel1.csv delete mode 100644 modules/templates/NanoStringGeoMxDSPLevel2.csv delete mode 100644 modules/templates/NanoStringGeoMxDSPLevel3.csv delete mode 100644 modules/templates/PersonView.csv delete mode 100644 modules/templates/ProjectView.csv delete mode 100644 modules/templates/PublicationView.csv delete mode 100644 modules/templates/SequencingLevel1.csv delete mode 100644 modules/templates/SequencingLevel2.csv delete mode 100644 modules/templates/SequencingLevel3.csv delete mode 100644 modules/templates/Study.csv delete mode 100644 modules/templates/ToolView.csv diff --git a/modules/templates/10xVisiumAuxiliaryFiles.csv b/modules/templates/10xVisiumAuxiliaryFiles.csv deleted file mode 100644 index dda34c65..00000000 --- a/modules/templates/10xVisiumAuxiliaryFiles.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Filename,File Format,Biospecimen Key,10xVisiumAuxiliaryFiles_id,10xVisiumRNALevel1 Key,10xVisiumRNALevel2 Key,10xVisiumRNALevel3 Key,10xVisiumRNALevel4 Key,Run ID,Visium File Type,Slide ID,Capture Area,Workflow Version,Workflow Link -10xVisiumAuxiliaryFiles,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel1.csv b/modules/templates/10xVisiumRNALevel1.csv deleted file mode 100644 index 21d042c3..00000000 --- a/modules/templates/10xVisiumRNALevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel1_id,Filename,Visium Run ID,File Format,Biospecimen Key,File Alias,NGS Read Indicator,Visium Spatial Read1,Visium Spatial Read2,Visium Spatial Library Construction Method,NGS Library Preparation Days from Index,NGS Sequencing Library Construction Days from Index,NGS End Bias,NGS Reverse Transcription Primer,NGS Sequencing Platform,Visium Capture Area,Protocol Link,Visium Slide Version,Visium Slide ID,Visium Image Re-orientation,Visium Permeabilization Time,NGS RIN,NGS DV200 -10xVisiumRNALevel1,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel2.csv b/modules/templates/10xVisiumRNALevel2.csv deleted file mode 100644 index 72459f5b..00000000 --- a/modules/templates/10xVisiumRNALevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel2_id,Filename,File Format,Checksum,10xVisiumRNALevel1 Key,File Alias,Visium UMI Tag,Visium Whitelist Spatial Barcode File Link,Visium Spatial Barcode Tag,Visium Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Visium Run ID,Visium Capture Area -10xVisiumRNALevel2,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel3.csv b/modules/templates/10xVisiumRNALevel3.csv deleted file mode 100644 index f0d7ad52..00000000 --- a/modules/templates/10xVisiumRNALevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel3_id,Filename,File Format,Biospecimen Key,10xVisiumRNALevel2 Key,10xVisiumAuxiliaryFiles Key,File Alias,Visium Run ID,Visium File Type,Workflow Version,Workflow Link,Visium Capture Area,Visium Spots under tissue,Visium Mean Reads per Spatial Spot,Visium Median Number Genes per Spatial Spot,NGS Sequencing Coverage,Visium Proportion Reads Mapped,Visium Proportion Reads Mapped to Transcriptome,Visium Median UMI Counts per Spot -10xVisiumRNALevel3,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumRNALevel4.csv b/modules/templates/10xVisiumRNALevel4.csv deleted file mode 100644 index 519ef96c..00000000 --- a/modules/templates/10xVisiumRNALevel4.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel4_id,Filename,File Format,Biospecimen Key,10xVisiumRNALevel3 Key,Run ID,Workflow Version,Workflow Link,Visium Workflow Type,Visium Workflow Parameters Description -10xVisiumRNALevel4,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv b/modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv deleted file mode 100644 index 160d867b..00000000 --- a/modules/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Filename,File Format,Biospecimen Key,VisiumAux_id,VisiumRNALevel1 Key,VisiumRNALevel2 Key,VisiumRNALevel3 Key,VisiumRNALevel4 Key,Run ID,Visium File Type,Slide ID,Capture Area,Workflow Version,Workflow Link -10xVisiumSpatialTranscriptomics-AuxiliaryFiles,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv deleted file mode 100644 index b54832cc..00000000 --- a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel1_id,Filename,Run ID,File Format,Biospecimen Key,File Alias,Read Indicator,Spatial Read1,Spatial Read2,Spatial Library Construction Method,Library Preparation Days from Index,Sequencing Library Construction Days from Index,End Bias,Reverse Transcription Primer,Sequencing Platform,Capture Area,Protocol Link,Slide Version,Slide ID,Image Re-orientation,Permeabilization Time,RIN,DV200 -10xVisiumSpatialTranscriptomics-RNA-seqLevel1,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv deleted file mode 100644 index 2a7015c4..00000000 --- a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel2_id,Filename,File Format,Checksum,VisiumRNALevel1 Key,File Alias,UMI Tag,Whitelist Spatial Barcode File Link,Spatial Barcode Tag,Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Run ID,Capture Area -10xVisiumSpatialTranscriptomics-RNA-seqLevel2,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv deleted file mode 100644 index d6fb50b2..00000000 --- a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel3_id,Filename,File Format,Biospecimen Key,VisiumRNALevel2 Key,VisiumAux Key,File Alias,Run ID,Visium File Type,Workflow Version,Workflow Link,Capture Area,Spots under tissue,Mean Reads per Spatial Spot,Median Number Genes per Spatial Spot,Sequencing Saturation,Proportion Reads Mapped,Proportion Reads Mapped to Transcriptome,Median UMI Counts per Spot -10xVisiumSpatialTranscriptomics-RNA-seqLevel3,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv b/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv deleted file mode 100644 index b33a5a1e..00000000 --- a/modules/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel4_id,Filename,File Format,Biospecimen Key,VisiumRNALevel3 Key,Run ID,Workflow Version,Workflow Link,Visium Workflow Type,Visium Workflow Parameters Description -10xVisiumSpatialTranscriptomics-RNA-seqLevel4,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/Biospecimen.csv b/modules/templates/Biospecimen.csv deleted file mode 100644 index fb54a2c9..00000000 --- a/modules/templates/Biospecimen.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Biospecimen_id,Study Key,Individual Key,Model Key,Parent Biospecimen Key,Biospecimen Type,Biospecimen Acquisition Method,Biospecimen Stain,Biospecimen Species,Biospecimen Sex,Biospecimen Age at Collection,Biospecimen Age at Collection Unit,Biospecimen Disease Type,Biospecimen Primary Site,Biospecimen Primary Diagnosis,Biospecimen Site of Origin,Biospecimen Tumor Subtype,Biospecimen Tumor Grade,Biospecimen Known Metastasis Sites,Biospecimen Tumor Morphology,Biospecimen Pathology,Biospecimen Composition,Biospecimen Preservation Method,Biospecimen Fixative,Biospecimen Embedding Medium,Biospecimen Anatomic Site,Biospecimen Site of Resection or Biopsy,Biospecimen Timepoint Type,Biospecimen Timepoint Offset,Biospecimen Collection Site,Biospecimen Therapeutic Agent,Biospecimen Last Known Disease Status,Biospecimen BioSample Identifier,Biospecimen Description -Biospecimen,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/DataDSP.csv b/modules/templates/DataDSP.csv deleted file mode 100644 index cdd72926..00000000 --- a/modules/templates/DataDSP.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,DataDSP_id,Study Key,DatasetView Key,DSP Dataset Alias,DSP Dataset Name,DSP Dataset Url,DSP Dataset Assay,DSP Dataset Level,DSP Dataset Species,DSP Dataset Tumor Type,DSP Dataset Tissue,DSP Dataset File Formats,DSP Number of Files,DSP Number of Samples,DSP Number of Participants,DSP Storage Size,DSP Dataset Description,DSP Planned Upload Date,DSP Planned Release Date,DSP Data Use Codes,DSP IRB Form,DSP Dataset Destination -DataDSP,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/DatasetView.csv b/modules/templates/DatasetView.csv deleted file mode 100644 index fe709ad5..00000000 --- a/modules/templates/DatasetView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,DatasetView_id,Study Key,PublicationView Key,Dataset Name,Dataset Alias,Dataset Description,Dataset Design,Dataset Assay,Dataset Species,Dataset Tumor Type,Dataset Tissue,Dataset Url,Dataset File Formats,Data Use Codes -DatasetView,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/EducationalResource.csv b/modules/templates/EducationalResource.csv deleted file mode 100644 index 73b11839..00000000 --- a/modules/templates/EducationalResource.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,EducationalResource_id,Resource Title,Resource Link,Resource Topic,Resource Activity Type,Resource Primary Format,Resource Intended Use,Resource Primary Audience,Resource Educational Level,Resource Description,Resource Origin Institution,Resource Language,Resource Contributors,Resource Grant Number,Resource Secondary Topic,Resource License,Resource Use Requirements,Resource Alias,Resource Internal Identifier,Resource Media Accessibility,Resource Access Hazard,Resource Dataset Alias,Resource Tool Link -EducationalResource,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/FileView.csv b/modules/templates/FileView.csv deleted file mode 100644 index 92ac2521..00000000 --- a/modules/templates/FileView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,FileView_id,Biospecimen Key,Study Key,DatasetView Key,Filename,File Alias,File Description,File Design,File Level,File Assay,File Species,File Tumor Type,File Tissue,File Url,File Format,Data Use Codes,File Longitudinal Group,File Longitudinal Event Type,File Longitudinal Sequence Identifier,File Longitudinal Time Elapsed Unit,File Longitudinal Sequential Time Elapsed,File Longitudinal Total Time Elapsed -FileView,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/GrantView.csv b/modules/templates/GrantView.csv deleted file mode 100644 index d19386e1..00000000 --- a/modules/templates/GrantView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,GrantView_id,Grant Name,Grant Number,Grant Abstract,Grant Type,Grant Theme Name,Grant Institution Name,Grant Institution Alias,Grant Investigator,Grant Consortium Name,Grant Start Date,NIH RePORTER Link,Duration of Funding,Embargo End Date,Grant Synapse Team,Grant Synapse Project -GrantView,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingChannel.csv b/modules/templates/ImagingChannel.csv deleted file mode 100644 index 67573f9c..00000000 --- a/modules/templates/ImagingChannel.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingChannel_id,Study Key,Channel Identifier,Channel Name,Channel Passed QC,Channel Cycle Number,Channel Sub-cycle Number,Channel Antibody Role,Channel Target Name,Channel Antibody Name,Channel Resource ID,Channel Fluorophore,Channel Antibody Clone,Channel Antibody Lot,Channel Antibody Vendor,Channel Antibody Catalog Number,Channel Excitation Wavelength,Channel Emission Wavelength,Channel Excitation Bandwidth,Channel Emission Bandwidth,Channel Metal Symbol,Channel Metal Isotope,Channel Oligo Barcode Upper Strand,Channel Oligo Barcode Lower Strand,Channel Probe Dilution Ratio,Channel Probe Concentration -ImagingChannel,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel1.csv b/modules/templates/ImagingLevel1.csv deleted file mode 100644 index 944966f8..00000000 --- a/modules/templates/ImagingLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel1_id,Filename,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,ImagingChannel Key -ImagingLevel1,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel2.csv b/modules/templates/ImagingLevel2.csv deleted file mode 100644 index 8f20521c..00000000 --- a/modules/templates/ImagingLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel2_id,Filename,ImagingLevel1 Key,ImagingChannel Key,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,Image Objective,Image Nominal Magnification,Image Lense Aperture,Image Working Distance,Image Working Distance Unit,Image Immersion Type,Image Pyramidal,Image Z stack,Image Timeseries,Image FOV Index,Image FOV Size X,Image FOV Size X Unit,Image FOV Size Y,Image FOV Size Y Unit,Image Frame Averaging,Image Identifier,Image Dimension Order,Image Physical Size X,Image Physical Size X Unit,Image Physical Size Y,Image Physical Size Y Unit,Image Physical Size Z,Image Physical Size Z Unit,Image Pixels BigEndian,Image Plane Count,Image Channel Size,Image Number of Timepoints,Image X Pixels,Image Y Pixels,Image Z Pixels,Image Pixel Type -ImagingLevel2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel3Image.csv b/modules/templates/ImagingLevel3Image.csv deleted file mode 100644 index c7452c5d..00000000 --- a/modules/templates/ImagingLevel3Image.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel3Image_id,Filename,ImagingChannel Key,ImagingLevel2 Key,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,Image Objective,Image Nominal Magnification,Image Lense Aperture,Image Working Distance,Image Immersion Type,Image Pyramidal,Image Z stack,Image Timeseries,Image FOV Index,Image FOV Size X,Image FOV Size Y,Image FOV Size Y Unit,Image Frame Averaging -ImagingLevel3Image,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel3Segments.csv b/modules/templates/ImagingLevel3Segments.csv deleted file mode 100644 index bf4bf6f3..00000000 --- a/modules/templates/ImagingLevel3Segments.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel3Segments_id,Filename,ImagingLevel2 Key,ImagingLevel3Image Key,Image Segmentation Data Type,Image Parameter file,Software and Version,Image Object Class,Image Object Class Description,Image Number of Objects -ImagingLevel3Segments,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ImagingLevel4.csv b/modules/templates/ImagingLevel4.csv deleted file mode 100644 index 74f9857a..00000000 --- a/modules/templates/ImagingLevel4.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel4_id,Filename,ImagingLevel2 Key,ImagingLevel3Image Key,ImagingLevel3Segments Key,Image Parameter file,Image Software,Image Number of Objects,Image Number of Features,Image Object Class,Image Summary Statistic -ImagingLevel4,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/Individual.csv b/modules/templates/Individual.csv deleted file mode 100644 index abea9720..00000000 --- a/modules/templates/Individual.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Individual_id,Study Key,Individual dbGaP Subject Id,Individual Sex,Individual Gender,Individual Age at Diagnosis,Individual Disease Type,Individual Primary Diagnosis,Individual Primary Site,Individual Primary Tumor Stage,Individual Site of Origin,Individual Tumor Subtype,Individual Tumor Grade,Individual Tumor Lymph Node Stage,Individual Known Metastasis Sites,Individual Metastasis Stage,Individual Treatment Type,Individual Therapeutic Agent,Individual Days to Treatment,Individual Treatment Outcome,Individual Days to Last Followup,Individual Recurrence Status,Individual Days To Recurrence,Individual Days to Last Known Disease Status,Individual Last Known Disease Status -Individual,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/Model.csv b/modules/templates/Model.csv deleted file mode 100644 index b00dcc52..00000000 --- a/modules/templates/Model.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Model_id,Study Key,Individual Key,Model Age,Model Age Unit,Model Sex,Model Primary Diagnosis,Model Site of Origin,Model Tumor Type,Model Tumor Subtype,Model Species,Model Type,Model Method,Model Source,Model Acquisition Type,Model Graft Source,Model Genotype,Model Treatment Type,Model Therapeutic Agent -Model,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMXROISegmentAnnotation.csv b/modules/templates/NanoStringGeoMXROISegmentAnnotation.csv deleted file mode 100644 index 317d5327..00000000 --- a/modules/templates/NanoStringGeoMXROISegmentAnnotation.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMXROISegmentAnnotation_id,Biospecimen Key,GeoMx Scan name,GeoMx ROI Name,GeoMx AOI Name,GeoMx Tags,GeoMx ROI X Coordinate,GeoMx ROI Y Coordinate,GeoMx AOI X Coordinate,GeoMx AOI Y Coordinate,GeoMx QC status,GeoMx Scan Height,GeoMx Scan Width,GeoMx Scan Offset X,GeoMx Scan Offset Y,GeoMx Binding Density,GeoMx Positive norm factor,GeoMx Surface area,GeoMx Nuclei count,GeoMx Tissue Stain,GeoMx Slide name,NGS Raw reads,NGS Stitched reads,NGS Aligned reads,NGS Deduplicated reads,NGS Trimmed reads,NGS Sequencing Coverage,NGS MapQ30,GeoMx Negative count mean,GeoMx No Template Control count,GeoMx Excluded Outlier Probes,GeoMx Limit of Quantification -NanoStringGeoMXROISegmentAnnotation,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxAuxiliaryFiles.csv b/modules/templates/NanoStringGeoMxAuxiliaryFiles.csv deleted file mode 100644 index e16193f5..00000000 --- a/modules/templates/NanoStringGeoMxAuxiliaryFiles.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxAuxiliaryFiles_id,Synapse ID of GeoMx DSP ROI Segment Annotation File,Synapse ID of GeoMx DSP PKC File,Synapse ID of GeoMx Lab Worksheet File,Synapse ID of GeoMx DSP Config File -NanoStringGeoMxAuxiliaryFiles,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPImaging.csv b/modules/templates/NanoStringGeoMxDSPImaging.csv deleted file mode 100644 index 695c29ff..00000000 --- a/modules/templates/NanoStringGeoMxDSPImaging.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPImaging_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxDSPLevel2 Key,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,GeoMx Imaging Channel Names -NanoStringGeoMxDSPImaging,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPImagingLevel2.csv b/modules/templates/NanoStringGeoMxDSPImagingLevel2.csv deleted file mode 100644 index 093b7c01..00000000 --- a/modules/templates/NanoStringGeoMxDSPImagingLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPImagingLevel2_id,Project Key,Study Key,Filename,File Format,Parent Biospecimen ID,Synapse ID of Data File,Synapse ID of GeoMx ROI Segment Annotation File,ROI Name,AOI Name,Imaging Channel Names -NanoStringGeoMxDSPImagingLevel2,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPLevel1.csv b/modules/templates/NanoStringGeoMxDSPLevel1.csv deleted file mode 100644 index 5bf23135..00000000 --- a/modules/templates/NanoStringGeoMxDSPLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPLevel1_id,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,Filename,GeoMx DSP Assay Type,NGS Target Sequencing Depth,NGS Read Length,NGS Sequencing Platform,NGS Library Selection Method,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version -NanoStringGeoMxDSPLevel1,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPLevel2.csv b/modules/templates/NanoStringGeoMxDSPLevel2.csv deleted file mode 100644 index 4711f36f..00000000 --- a/modules/templates/NanoStringGeoMxDSPLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPLevel2_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,GeoMx DSP Assay Type,Software and Version,Genomic Reference,NGS Sequencing Platform,NGS Library Selection Method,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version -NanoStringGeoMxDSPLevel2,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/NanoStringGeoMxDSPLevel3.csv b/modules/templates/NanoStringGeoMxDSPLevel3.csv deleted file mode 100644 index 38b6e0d2..00000000 --- a/modules/templates/NanoStringGeoMxDSPLevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPLevel3_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxDSPLevel2 Key,NanoStringGeoMxAuxiliaryFiles Key,NGS Unique Probe Count,NGS Unique Target Count,NGS Matrix Type,Workflow Type,Workflow Parameter Description,Workflow Link -NanoStringGeoMxDSPLevel3,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/PersonView.csv b/modules/templates/PersonView.csv deleted file mode 100644 index 3c426a2b..00000000 --- a/modules/templates/PersonView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,PersonView_id,GrantView Key,Person Consortium Name,Name,Alternative Names,Email,Url,Orcid Id,Synapse Profile Id,Last Known Institution,Working Group Participation,Chair Roles,Consent For Portal Display,Portal Display,Person Publications,Person Datasets,Person Tools,Person Educational Resources -PersonView,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ProjectView.csv b/modules/templates/ProjectView.csv deleted file mode 100644 index fe5fb134..00000000 --- a/modules/templates/ProjectView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ProjectView_id,GrantView Key,Project Name,Project Type,Project Description,Project Investigator -ProjectView,,,,,, \ No newline at end of file diff --git a/modules/templates/PublicationView.csv b/modules/templates/PublicationView.csv deleted file mode 100644 index fb16391a..00000000 --- a/modules/templates/PublicationView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,PublicationView_id,Study Key,Publication Doi,Publication Journal,Pubmed Id,Pubmed Url,Publication Title,Publication Year,Publication Keywords,Publication Authors,Publication Abstract,Publication Assay,Publication Tumor Type,Publication Tissue,Publication Accessibility -PublicationView,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/SequencingLevel1.csv b/modules/templates/SequencingLevel1.csv deleted file mode 100644 index 5a4e3874..00000000 --- a/modules/templates/SequencingLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,SequencingLevel1_id,Filename,NGS Library Strategy,NGS Library Source,NGS Library Selection Method,NGS Library Layout,NGS Sequencing Platform,NGS Sequencing Design Description,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version,NGS Read Indicator,NGS Library Preparation Days from Index,NGS Sequencing Library Construction Days from Index -SequencingLevel1,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/SequencingLevel2.csv b/modules/templates/SequencingLevel2.csv deleted file mode 100644 index e71a04bd..00000000 --- a/modules/templates/SequencingLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,SequencingLevel2_id,SequencingLevel1 Key,Filename,NGS Library Strategy,NGS Library Source,NGS Library Selection Method,NGS Library Layout,NGS Sequencing Platform,NGS Sequencing Design Description,NGS Raw reads,NGS Stitched reads,NGS Aligned reads,NGS Deduplicated reads,NGS Trimmed reads,NGS MapQ30,NGS Unique Bases,NGS Read Length,NGS Sequencing Coverage,Genomic Reference,Software and Version -SequencingLevel2,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/SequencingLevel3.csv b/modules/templates/SequencingLevel3.csv deleted file mode 100644 index 053d8141..00000000 --- a/modules/templates/SequencingLevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,SequencingLevel3_id,SequencingLevel2 Key,Filename,NGS Unique Probe Count,NGS Unique Target Count,NGS Matrix Type,Software and Version -SequencingLevel3,,,,,,, \ No newline at end of file diff --git a/modules/templates/Study.csv b/modules/templates/Study.csv deleted file mode 100644 index 7abf7c45..00000000 --- a/modules/templates/Study.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Study_id,GrantView Key,ProjectView Key,Study dbGaP Accession Id,Study Name,Study Description,Study Investigator,PersonView Key,Study Number of Participants,Study De-identification Method Type,Study De-identification Method Description,Study De-identification Method Software,Study Reuse Statement,Study Data Use Codes,Study License -Study,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/modules/templates/ToolView.csv b/modules/templates/ToolView.csv deleted file mode 100644 index 644f2044..00000000 --- a/modules/templates/ToolView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ToolView_id,Study key,DatasetView Key,PublicationView Key,Tool Name,Tool Description,Tool Homepage,Tool Version,Tool Operation,Tool Input Data,Tool Output Data,Tool Input Format,Tool Output Format,Tool Function Note,Tool Cmd,Tool Type,Tool Topic,Tool Operating System,Tool Language,Tool License,Tool Cost,Tool Accessibility,Tool Download Url,Tool Download Type,Tool Download Note,Tool Download Version,Tool Documentation Url,Tool Documentation Type,Tool Documentation Note,Tool Link Url,Tool Link Type,Tool Link Note,Tool Date Last Modified,Tool Release Date,Tool Package Dependencies,Tool Package Dependencies Present,Tool Compute Requirements,Tool Entity Name,Tool Entity Type,Tool Entity Role -ToolView,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file From c721a5bfdc305bb070f44de028f995f2bffeabd4 Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Wed, 5 Feb 2025 17:52:14 -0600 Subject: [PATCH 004/106] save progress on editing the annotation properties --- docs/index.md | 79 +++++++++++++++------ docs/model/DataDSP.md | 26 ++++--- docs/model/dataset.md | 32 ++++++--- docs/model/education.md | 20 ++++-- docs/model/file.md | 19 +++-- docs/model/grant.md | 16 ++++- docs/model/person.md | 16 ++++- docs/model/publication.md | 15 +++- docs/model/study.md | 22 +++++- docs/model/tool.md | 15 ++-- modules/dataset/annotationProperty.csv | 26 +++---- modules/dataset/template.csv | 24 +++---- modules/education/annotationProperty.csv | 11 ++- modules/education/template.csv | 11 ++- modules/file/annotationProperty.csv | 3 +- modules/grant/annotationProperty.csv | 14 ++-- modules/person/annotationProperty.csv | 8 +-- modules/publication/annotationProperty.csv | 18 ++--- modules/sharingPlans/annotationProperty.csv | 20 +++--- modules/sharingPlans/template.csv | 20 +++--- modules/study/annotationProperty.csv | 12 ++-- modules/tool/annotationProperty.csv | 36 +++++----- 22 files changed, 291 insertions(+), 172 deletions(-) diff --git a/docs/index.md b/docs/index.md index 83113f2e..2531d5b5 100644 --- a/docs/index.md +++ b/docs/index.md @@ -8,36 +8,73 @@

-**Welcome!** πŸ‘‹ Explore metadata terms used by MC2 Center -project by key, value, or descriptions. +### **Welcome!** +The MC2 Center Data Models Explorer enables structured, standardized documentation of data and resources for research projects like the [Cancer Complexity Knowledge Portal](https://www.cancercomplexity.synapse.org/). -### How to Use +This platform is designed to support **researchers**, **developers**, and **data contributors** by enhancing collaboration, reproducibility, and data discovery through clear metadata standards. Documenting key attributes of datasets, studies, publications, and more ensures that research outputs remain accessible and reusable across teams and projects. -1. ↑ Use the search bar above for a specific term +### **What Can You Do Here?** +The platform supports the documentation and upload of a variety of resource types. Choose the resource relevant to your work from the table below: -2. ← Use the left navigation to explore all existing terms by category +| **Resource Type** | **Description** | +|---------------------------|---------------------------------------------------------------------------------------------------------| +| **Datasets** | Collections of structured data such as clinical or genomic research results. | +| **Studies** | Research projects with details like methodologies, assays, and participant data. | +| **Publications** | Academic papers or reports with citations, abstracts, and other metadata. | +| **Grants** | Funding information including institutions, collaborations, and grant IDs. | +| **Educational Resources** | Tutorials, guides, and learning materials to support knowledge sharing. | +| **Files** | Individual research files to organize and reference within projects. | +| **Tools** | Software applications used for data analysis, visualization, and workflow automation. | +| **Persons** | Profiles of key individuals involved in research projects, including investigators and contributors. | ---- +By documenting your resources here, you make your work more discoverable, reproducible, and impactful. -### Next Steps +### **Who Should Use This Platform?** -To start contributing to your resources on the Cancer Complexity Knowledge -Portal (CCKP), please read [our CCKP docs]. +The MC2 Data Models Explorer is tailored to meet the needs of various users. Whether you're managing datasets or contributing software tools, here's how it benefits you: ---- +| **User Type** | **How You Benefit** | +|------------------------|----------------------------------------------------------------------------------------------------------| +| **Researchers** | Increase visibility and reproducibility of your studies and datasets. | +| **Developers** | Share and document tools that streamline research workflows. | +| **Data Scientists** | Catalog critical data resources to advance discovery and innovation. | +| **Project Managers** | Maintain consistency and traceability of research resources over time. | +| **Educators** | Disseminate tutorials and training materials to enhance learning and skill-building. | -### Found an error? +By contributing metadata and resources, you support a robust knowledge network that accelerates scientific progress. -We are always looking for ways to improve our data models. If there is -an issue with an existing term - or if you have a suggestion - [let us know]! -Or, if you would like to contribute to the project directly, read our -[contribution guidelines]. +### **Why Contribute Resources?** -!!!important - Changing existing terminology may result in breaking changes downstream, - so not all suggestions may be considered unless they are well-justified. +Contributing resources benefits both you and the wider research community. Here’s why it matters: -[our CCKP docs]: https://help.cancercomplexity.synapse.org/doc/contributing-and-updating-data-in-the-portal -[contribution guidelines]: https://mc2-center.github.io/data-models/contributing/ -[let us know]: https://github.com/mc2-center/data-models/issues/new?assignees=aditigopalan&labels=bug&projects=&template=bug-report.md&title=%5Bbug%5D+ \ No newline at end of file +| **Benefit** | **Description** | +|-------------------------|------------------------------------------------------------------------------------------------------------| +| **Visibility** | Your work becomes more discoverable, potentially attracting new collaborators and citations. | +| **Reproducibility** | Comprehensive metadata enables others to replicate or extend your research findings. | +| **Collaboration** | Sharing resources opens opportunities to connect with researchers tackling similar challenges. | +| **Data Longevity** | Properly documented data remains accessible and useful for long-term projects and evolving technologies. | +| **Recognition** | Demonstrating your commitment to open science enhances your professional reputation and credibility. | + +Your contributions make a difference by fostering openness, innovation, and collaboration. + + +### **How to Use This Platform** + +The Data Models Explorer offers easy navigation and search options: + +| **Action** | **Instructions** | +|-------------------------|----------------------------------------------------------------------------------------------------------| +| **Search for Terms** | Use the search bar above to look for specific metadata terms. | +| **Browse Categories** | Navigate using the left-hand menu to explore terms organized by resource type. | + +If you're ready to contribute your resources, check out the [tutorial page](home/tutorial.md) for step-by-step guidance. + +### **Found an Error?** + +We continuously work to improve our data models. If you notice any issues or have suggestions, please [let us know]. + +You can also read our [contribution guidelines] if you'd like to submit updates directly. + +!!!important + Changes to existing terms may have downstream impacts, so please provide clear justifications for any major revisions. \ No newline at end of file diff --git a/docs/model/DataDSP.md b/docs/model/DataDSP.md index 5bff4489..90db8da2 100644 --- a/docs/model/DataDSP.md +++ b/docs/model/DataDSP.md @@ -1,11 +1,19 @@ -This page outlines the attributes used to document and share dataset plans within MC2 Center-supported Synapse projects. The DataDSP model ensures that datasets are well-organized, traceable, and meet compliance requirements for data storage, sharing, and use. +A **Dataset Sharing Plan (DataDSP)** is a structured framework used to document the sharing, storage, and usage details of datasets within MC2 Center-supported Synapse projects. These plans help ensure datasets are traceable, well-organized, and compliant with regulations regarding data sharing, accessibility, and ethical use. By defining attributes such as dataset names, assays, species, and sharing permissions, the model facilitates efficient data management and collaboration across research projects. +This page outlines the key attributes required to create a DataDSP, guiding users on how to structure and share datasets while adhering to best practices. It also demonstrates how attributes like planned upload dates, file formats, and grant numbers are used to ensure compliance with both internal and external data-sharing policies. + +## **Why You Should Contribute DataDSP Entries** +Contributing DataDSP entries benefits your research and projects by improving data accessibility, organization, and compliance. With complete entries, you enhance collaboration opportunities, simplify data sharing, and increase the impact and visibility of your datasets in research communities. By ensuring your data is properly documented and discoverable, you also reduce administrative burdens during audits, grant reporting, and data requests. + +### **Who Should Be Contributing DataDSP Entries?** +1. **Principal Investigators (PIs)** – Gain recognition for your research by making your data easily accessible and well-documented, improving citation potential and collaboration opportunities. +2. **Data Managers** – Ensure efficient data organization and compliance, minimizing time spent addressing data queries or audits. +3. **Research Coordinators** – Streamline project workflows by contributing accurate metadata, reducing delays in data sharing and project reporting. +4. **Consortium Members** – Enhance collaboration by contributing standardized data entries, ensuring that datasets are usable across multiple institutions and research projects. -## Required Fields -Mandatory fields like 'DSP Dataset Name,' 'DSP Dataset Assay,' 'DSP Dataset Species,' and 'DataDSP_id' are essential for uniquely identifying and categorizing datasets. These attributes ensure completeness and help users locate or reference datasets within repositories. ## Download Template -To streamline data entry, you can download the [DataDSP CSV template](https://github.com/mc2-center/data-models/raw/main/templates/DataDSP.csv). +Download the [DataDSP CSV template](https://github.com/mc2-center/data-models/raw/main/templates/DataDSP.csv) for streamlined data entry, ensuring that all required fields are filled out. ## Example Data Entry @@ -13,20 +21,22 @@ The table below includes sample values to demonstrate proper attribute usage. | **Attribute** | **Example Value** | |-----------------------------|-------------------------------------------------------------------------------------------------------------------------| -| DSP Dataset Name | DSP_Dataset_Sales_Analysis_2020 | -| DSP Dataset Alias | Sales_Data_2020 | -| DSP Dataset Assay | Flow Cytometry | +| DSP Dataset Name | DSP_Dataset_Lung_Research_2021 | +| DSP Dataset Alias | Syn123456 | +| DSP Dataset Assay | 3D Bioprinting | | DSP Dataset Species | Asian Elephant | | DSP Dataset File Formats | CSV, JSON | | DSP Planned Upload Date | 2022-12-01 | | DSP Dataset Grant Number | CA209971 | -| DSP Dataset Description | "Preprocessed audio data for machine learning models, including frequency components, spectral analysis, etc." | +| DSP Dataset Description | "A quick description of your data sharing plan." | | DSP Dataset Destination | "/home/user/datasets/dsp_output" | | DSP Dataset Url | https://www.example.com/dataset/dsp1234 | ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/DataDSP.csv) diff --git a/docs/model/dataset.md b/docs/model/dataset.md index 13ae7a38..12c1a0e2 100644 --- a/docs/model/dataset.md +++ b/docs/model/dataset.md @@ -1,7 +1,15 @@ -This section outlines how to create a valid dataset entry, focusing on required fields, usage instructions, and an example to guide users. +A **Dataset** refers to a structured collection of data that is organized for analysis, sharing, and research. Datasets can include various types of information such as demographic statistics, experimental results, or survey responses. In MC2 Center-supported projects, dataset entries help ensure data is properly categorized, easily retrievable, and compliant with sharing and storage requirements. -## Required Fields -Required fields ensure data accuracy, uniqueness, and discoverability. Fields such as 'Dataset Name', 'Dataset Alias', and 'DatasetView_id' must be filled out to submit an entry successfully. +This model outlines key attributes that describe and manage datasets, including metadata about the data type, format, number of samples, and related grant information. By maintaining these attributes, datasets can be efficiently tracked and referenced within data repositories. + +## **Why You Should Contribute Dataset Entries** +Contributing dataset entries helps ensure your data is easily discoverable, accurately documented, and compliant with research standards. By providing well-structured dataset metadata, you enhance opportunities for collaboration, boost data citation potential, and reduce administrative overhead for reporting and compliance. Well-documented datasets also help other researchers and stakeholders use your data effectively, increasing its long-term impact. + +### **Who Should Be Contributing Dataset Entries?** +1. **Principal Investigators (PIs)** – Increase the visibility and impact of your research by contributing properly cataloged datasets, making it easier for others to cite and use your work. +2. **Data Managers** – Improve data organization and retrieval, reducing time spent on requests for data clarification and documentation during audits. +3. **Research Staff** – Simplify project reporting by ensuring that datasets are complete with accurate descriptions, grant associations, and metadata. +4. **Collaborators and Partners** – Enhance data interoperability across multiple institutions by contributing standardized entries that support shared research initiatives. ## Download Template @@ -12,14 +20,14 @@ The table below includes sample values to demonstrate proper attribute usage. | **Attribute** | **Example Value** | |-------------------------|---------------------------------------------------------------------------------------------------------| -| Dataset Name | U.S. Census Data 2019 | -| Dataset Alias | Census_2019 | -| Dataset Description | This dataset includes demographic and economic statistics collected in the U.S. Census 2019. | -| Dataset Url | [https://www.census.gov/data.html](https://www.census.gov/data.html) | -| Dataset Assay | None | -| Dataset Species | Human | -| Dataset Tumor Type | Not applicable | -| Dataset Tissue | Not applicable | +| Dataset Name | RNA Sequencing of Lung Cancer Samples 2021 | +| Dataset Alias | GSE56789 | +| Dataset Description | This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages. | +| Dataset Url | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789 | +| Dataset Assay | RNA Sequencing | +| Dataset Species | Homo sapiens | +| Dataset Tumor Type | Glioblastoma | +| Dataset Tissue | Lung | | Dataset File Formats | CSV, PDF | | Dataset Grant Number | CA209971 | | Dataset Pubmed Id | Not applicable | @@ -30,6 +38,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/DatasetView.csv) {{ read_csv('dataset/template.csv') }} diff --git a/docs/model/education.md b/docs/model/education.md index 0c067171..f4c1410a 100644 --- a/docs/model/education.md +++ b/docs/model/education.md @@ -1,7 +1,17 @@ -This section provides a simplified guide on how to create an educational resource entry by focusing on required fields, usage instructions, and an example. +An **Educational Resource** refers to any material designed to support learning and instruction. These resources can take many forms, such as videos, textbooks, simulations, or interactive activities, and are intended to be used by various audiences, including students, teachers, researchers, and lifelong learners. In MC2 Center-supported projects, these entries document key information about educational resources to ensure they are accessible, properly categorized, and easy to reference. + +This model defines attributes to describe each resource, including its title, topic, educational level, and usage, to facilitate discovery, sharing, and reuse within educational systems. + +## **Why You Should Contribute Educational Resource Entries** +Contributing educational resource entries helps expand access to valuable learning materials and supports knowledge sharing across the research and educational community. By documenting your resources thoroughly, you increase their discoverability, usability, and impact. Well-structured educational entries also provide opportunities for collaboration, curriculum development, and outreach, ensuring your work benefits a broader audience. + +### **Who Should Be Contributing Educational Resource Entries?** +1. **Educators and Trainers** – Increase the reach of your courses, workshops, and materials by making them easily accessible and categorized for learners. +2. **Curriculum Developers** – Contribute structured content that aligns with learning objectives and supports interdisciplinary research education. +3. **Researchers** – Share resources like tutorials, research guides, and recorded presentations to help others understand your methods and findings. +4. **Knowledge Dissemination Teams** – Ensure your organization’s educational resources are well-documented, improving outreach and engagement with students, collaborators, and stakeholders. +5. **Institutional Administrators** – Facilitate better knowledge sharing within and across institutions by maintaining a well-organized repository of training materials. -## Required Fields -Certain fields, such as 'Resource Title', 'Resource Link', 'Resource Primary Audience', and 'EducationalResource_id', are mandatory to ensure that resources can be uniquely identified, accessed, and categorized effectively. ## Download Template Use the [educational resource template](https://github.com/mc2-center/data-models/raw/main/templates/EducationalResource.csv) to streamline your data entry process. The template contains pre-defined required fields. @@ -20,7 +30,7 @@ The table below includes sample values to demonstrate proper attribute usage. | Resource Intended Use | Curriculum/Instruction | | Resource Primary Audience | Teacher | | Resource Educational Level | High School | -| Resource Description | This comprehensive e-book offers insights into advanced Python programming techniques. | +| Resource Description | This comprehensive e-book offers insights into the world of Biology | | Resource Origin Institution| Smithsonian Institution | | Resource Language | en | | Resource Contributors | John Smith, Jane Doe, XYZ Corporation | @@ -29,6 +39,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/EducationalResource.csv) {{ read_csv('education/template.csv') }} diff --git a/docs/model/file.md b/docs/model/file.md index 1fa5a816..c2103832 100644 --- a/docs/model/file.md +++ b/docs/model/file.md @@ -1,7 +1,16 @@ -This section explains how to create a valid file entry, focusing on required fields, template usage, and an example for reference. +A **File** represents a single data unit within a dataset, such as a document, spreadsheet, or image. In research and data management, files are essential for storing and organizing raw or processed data. They provide the foundation for data analysis, sharing, and compliance with storage policies. Properly formatted file entries ensure data can be retrieved, validated, and referenced consistently across projects. -## Required Fields -Fields like 'File Url', 'File Assay', 'File Level', 'File Species', 'File Format', and 'File Alias' are mandatory to ensure each file is uniquely identifiable and can be properly categorized and retrieved. +The attributes in this model describe key metadata about each file, including its format, assay type, species, and associated dataset. These details help maintain file traceability and usability within data repositories. + +## **Why You Should Contribute File Entries** +Contributing file entries ensures that critical data files are accessible, organized, and easily retrievable. By documenting your files with key metadata, you enhance their usability in research workflows and support data sharing and collaboration. Accurate and detailed file entries also help prevent data loss, streamline future analyses, and facilitate compliance with research data management policies. + +### **Who Should Be Contributing File Entries?** +1. **Researchers** – Share and organize key datasets and processed results to improve reproducibility and collaboration across projects. +2. **Data Managers** – Maintain an organized structure for large-scale data repositories by documenting file attributes like formats, assays, and species. +3. **Project Leads** – Ensure data generated by your research projects is categorized and described, making it easier for teams to access and reuse. +4. **Bioinformaticians and Data Analysts** – Provide detailed metadata to streamline data integration, analysis pipelines, and compatibility with downstream tools. +5. **Collaborative Consortia Members** – Contribute shared resources to foster data transparency, enabling broader collaboration and multi-institution research efforts. ## Download Template @@ -30,8 +39,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/FileView.csv) - +Below is the full field reference table with attributes and their descriptions. +[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/FileView.csv) {{ read_csv('file/template.csv') }} \ No newline at end of file diff --git a/docs/model/grant.md b/docs/model/grant.md index 69d21977..bc18c564 100644 --- a/docs/model/grant.md +++ b/docs/model/grant.md @@ -1,8 +1,16 @@ -This section explains how to create a valid grant entry, focusing on required fields, template usage, and an example for reference. +A **Grant** entry captures essential details about funded research projects. Grants support various scientific studies, often involving multiple institutions, investigators, and funding agencies. Accurate grant records facilitate resource tracking, collaboration, and compliance with funding requirements. -## Required Fields -Fields like 'Grant Name', 'Grant Number', 'Grant Abstract', 'Grant Type', 'Grant Institution Name', 'Grant Investigator', 'Grant Consortium Name', 'GrantView_id', and 'Grant Start Date' are mandatory to ensure each grant is uniquely identifiable and properly categorized. +This section outlines how to create a valid grant entry by defining key metadata, including grant type, institution, investigator, and project duration. Proper grant documentation ensures projects can be easily identified, referenced, and managed across research initiatives. +### **Why You Should Contribute Grant Entries** +Contributing grant entries ensures that funding sources, research objectives, and project details are transparent and traceable. This helps stakeholders monitor the progress of research initiatives, improves collaboration by connecting teams with similar funding, and supports compliance with reporting and accountability requirements. Accurate grant documentation also strengthens your ability to secure future funding by showcasing project outcomes and impacts. + +#### **Who Should Be Contributing Grant Entries?** +1. **Principal Investigators (PIs)** – Document your funded projects to highlight ongoing research, objectives, and collaborations for visibility and accountability. +2. **Research Administrators** – Maintain accurate grant records for compliance, progress monitoring, and reporting purposes. +3. **Data Managers** – Link datasets, publications, and other project outputs to their corresponding funding sources to improve data traceability. +4. **Grant Writers and Project Coordinators** – Provide detailed grant descriptions and metadata to showcase successful projects and support future funding proposals. +5. **Consortia and Collaborative Project Leads** – Share grant details to foster transparency and facilitate multi-institutional research efforts across teams and disciplines. ## Download Template @@ -35,6 +43,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/GrantView.csv) {{ read_csv('grant/template.csv') }} diff --git a/docs/model/person.md b/docs/model/person.md index 43d834ee..8ac1fded 100644 --- a/docs/model/person.md +++ b/docs/model/person.md @@ -1,8 +1,16 @@ -This section explains how to create a valid person entry in the database, with a focus on required fields, template usage, and a practical example to ensure data consistency and accuracy. +A **Person** entry provides detailed information about individuals involved in research projects, including their affiliations, roles, and contributions. Accurate person records are essential for tracking collaborations, grant participation, working group involvement, and expertise within scientific initiatives. -## Required Fields -Certain fields like 'Name', 'Last Known Institution', 'Working Group Participation', 'Chair Roles', 'Consent For Portal Display', 'Portal Display', 'Person Grant Number', 'Person Consortium Name', and 'PersonView_id' are mandatory to ensure that each entry provides sufficient detail for identification and categorization. +This section outlines how to create a valid person entry, ensuring that all necessary details are captured to support identification, categorization, and data integration within MC2 Center-supported projects. +### **Why You Should Contribute Person Entries** +Contributing person entries enhances collaboration by providing clear visibility into expertise, roles, and project involvement within research teams. It helps connect researchers and contributors across projects, facilitates networking opportunities, and allows stakeholders to easily identify key personnel for collaboration or consultation. Maintaining up-to-date profiles also supports transparency and improves recognition of contributions to research initiatives. + +#### **Who Should Be Contributing Person Entries?** +1. **Researchers and Scientists** – Document your roles, publications, and collaborations to increase visibility within your field and enable others to reach out for partnerships. +2. **Project Leads and Investigators** – Ensure key contributors to your projects are credited and easily searchable for collaboration and reporting purposes. +3. **Research Administrators** – Keep records of team members, roles, and working group participation to manage projects efficiently and facilitate compliance reporting. +4. **Consortium Members** – Share your expertise and involvement across multiple projects or institutions to encourage cross-disciplinary collaboration and integration of research efforts. +5. **Data Managers** – Link researchers to datasets, tools, and resources they have contributed to ensure traceability and acknowledgment of contributions. ## Download Template Download the [person entry template](https://github.com/mc2-center/data-models/raw/main/templates/PersonView.csv) for streamlined data entry, ensuring that all required fields are filled out. @@ -34,6 +42,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/PersonView.csv) {{ read_csv('person/template.csv') }} \ No newline at end of file diff --git a/docs/model/publication.md b/docs/model/publication.md index 3eafb9bf..f11c50c5 100644 --- a/docs/model/publication.md +++ b/docs/model/publication.md @@ -1,7 +1,14 @@ -This section outlines how to accurately document a publication entry, ensuring compliance with data model specifications. Use the template and example provided to maintain data accuracy and consistency. +A **Publication** entry documents key information about scientific articles, research studies, and related materials. Properly recording publications ensures that data is easily traceable, searchable, and meets compliance standards. This section explains how to create a valid publication entry using required fields, templates, and example data for guidance. -## Required Fields -Fields such as 'Publication Journal', 'Pubmed Id', 'Pubmed Url', 'Publication Title', 'Publication Year', 'Publication Authors', 'Publication Abstract', 'Publication Assay', 'Publication Tumor Type', 'Publication Tissue', 'Publication Accessibility', 'Publication Grant Number', and 'PublicationView_id' are mandatory to ensure a comprehensive record for each publication. +### **Why You Should Contribute Publication Entries** +Contributing publication entries helps highlight research achievements, supports compliance with funding and reporting requirements, and ensures the discoverability of research outputs. Accurate publication records promote transparency, facilitate citation tracking, and showcase the impact of research to stakeholders. Including comprehensive details such as PubMed IDs, keywords, and grant numbers enables efficient data organization and cross-referencing within research ecosystems. + +#### **Who Should Be Contributing Publication Entries?** +1. **Researchers and Authors** – Showcase your research contributions, improve visibility, and enable easier access to your published work through linked identifiers and citations. +2. **Project Leads and Investigators** – Ensure that key publications resulting from funded research projects are documented, supporting compliance and progress reporting. +3. **Research Administrators** – Maintain an accurate record of research outputs tied to grants and projects, which aids in tracking productivity and measuring impact. +4. **Consortium Members** – Document publications across collaborations to highlight the collective research contributions and foster recognition within the scientific community. +5. **Data Managers** – Link datasets, tools, and studies to their associated publications, providing full context for data provenance and enhancing traceability. ## Download Template @@ -34,6 +41,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/PublicationView.csv) {{ read_csv('publication/template.csv') }} \ No newline at end of file diff --git a/docs/model/study.md b/docs/model/study.md index 9468bcf9..02190448 100644 --- a/docs/model/study.md +++ b/docs/model/study.md @@ -1,7 +1,21 @@ -This section provides detailed guidance for creating and maintaining a study entry in compliance with data model standards. It is essential to follow these specifications to ensure accuracy, consistency, and usability of study-related data. +A **Study** entry documents key information about research projects, including methodologies, participants, and ethical considerations. Properly maintaining study records ensures that data is compliant with research standards, traceable, and usable across various scientific fields. This section explains how to create and maintain a valid study entry using the required fields, templates, and example data provided. -## Required Fields -Certain attributes, such as 'Study Name', 'Study Description', 'Study Investigator', 'Study_id', 'Study Number of Participants', and 'Study De-identification Method Type', are marked as mandatory. Completing these fields ensures a comprehensive and standardized data entry. + +### **Why You Should Contribute Study Entries** +Contributing study entries ensures that critical research details such as methodology, investigators, and related datasets are documented and accessible. This fosters transparency, collaboration, and reproducibility in research. A well-maintained study entry also helps stakeholders understand the scope, purpose, and outcomes of research efforts, enabling better data integration and analysis across projects. + +#### **Who Should Be Contributing Study Entries?** +1. **Principal Investigators (PIs)** – Provide clear documentation of your studies to enhance visibility and demonstrate research contributions for funding agencies and collaborators. + +2. **Research Coordinators and Project Leads** – Ensure proper record-keeping of studies under your supervision, supporting compliance, reporting, and resource allocation. + +3. **Data Managers** – Create study entries to link related datasets, publications, and tools, improving data provenance and facilitating cross-references within research ecosystems. + +4. **Consortium Participants** – Contribute study information to showcase collaborative research efforts and track joint achievements. + +5. **Funding Agencies and Grant Monitors** – Monitor study progress by ensuring that all funded research is accurately documented and accessible. + +6. **Ethics and Compliance Officers** – Maintain study entries to verify that all necessary de-identification methods, IRB protocols, and data use policies are in place. ## Download Template @@ -30,6 +44,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/Study.csv) {{ read_csv('study/template.csv') }} \ No newline at end of file diff --git a/docs/model/tool.md b/docs/model/tool.md index 39d90c67..4648d81c 100644 --- a/docs/model/tool.md +++ b/docs/model/tool.md @@ -1,9 +1,14 @@ -This section outlines the data attributes for registering and documenting a software tool in a structured and standardized manner. Each attribute in the table below has a distinct purpose, helping improve the usability, traceability, and functionality of the tool in research or technical environments. +A **Tool** entry documents software applications, utilities, or platforms designed to perform specific operations in research or technical workflows. These tools can include anything from data analysis programs to machine learning frameworks and bioinformatics utilities. Accurate documentation ensures that tools are easily discoverable, traceable, and appropriately integrated into research processes. +### **Why You Should Contribute Tool Entries** +Contributing tool entries supports collaboration, reproducibility, and innovation by helping researchers and teams discover and use essential software for data analysis, visualization, and processing. Accurate documentation ensures tools are accessible and impactful across projects. -## Required Attributes -Mandatory attributes such as 'Tool Name', 'Tool Description', 'Tool Entity Role', 'Tool Entity Type', 'Tool Release Date', and others are necessary for completeness and usability. These attributes provide essential data points for tool identification, description, and functionality. - +#### **Who Should Be Contributing Tool Entries?** +1. **Developers** – Share tools to boost adoption and integration. +2. **Researchers** – Document tools for replicability and collaboration. +3. **Data Scientists** – Ensure tools critical to workflows are recorded. +4. **Project Managers** – Maintain visibility of tools used across teams. +5. **IT and Support Specialists** – Provide operational details and support resources. ## Download Template You can download the [ToolView CSV template](https://github.com/mc2-center/data-models/raw/main/templates/ToolView.csv) to streamline data entry. @@ -31,6 +36,8 @@ The table below includes sample values to demonstrate proper attribute usage. ## Full Field Reference +Below is the full field reference table with attributes and their descriptions. + [– Download template](https://github.com/mc2-center/data-models/raw/main/templates/ToolView.csv) {{ read_csv('tool/template.csv') }} diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index 31c3a686..e9a73ca6 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -1,15 +1,15 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Dataset Name,Name of the dataset,,,True,,,,,,"""U.S. Census Data 2019""" -Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,True,,,,,unique,"""Financial Quarter 1 Sales Data 2020""" -Dataset Description,Description of the dataset.,,,False,,,,,,"This dataset aggregates Netflix programming data from 2019 to 2021. It includes information on the titles of shows/movies, premier date, genres, duration, and audience rating. The data is derived from publicly available information and directly from Netflix. This dataset can be used for programming analysis, viewing trend investigations, and content recommendation research. Each row represents a unique title, and there are no missing values." -Dataset Design,The overall design of the dataset.,,,False,,,,,,"'Cross-sectional', 'Time-series', 'Pooled Cross-sections', 'Panel data'" -Dataset Url,The url of where the dataset is stored.,,,True,,,,,url,https://www.kaggle.com/uciml/iris -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,Dataset Assay: 16S Ribosomal Gene Sequencing Assay -Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,Dataset Species: Cat -Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,Dataset Tumor Type: Glioblastoma -Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Dataset Tissue: Kidney +Dataset Name,Name of the dataset,,,True,,,,,,"RNA Sequencing of Lung Cancer Samples 2021" +Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,True,,,,,unique,"GSE56789" +Dataset Description,Description of the dataset.,,,False,,,,,,"This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages." +Dataset Design,The overall design of the dataset.,,,False,,,,,,"'Cross-sectional' to compare gene expression in healthy vs. tumor tissues, or 'Time-series' to observe changes during treatment." +Dataset Url,The url of where the dataset is stored.,,,True,,,,,url,"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789" +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,"RNA Sequencing" +Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,"Homo sapiens" +Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,"Glioblastoma" +Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,"Lung" Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,"""Dataset File Formats: AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" -Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats, Data Use Codes",False,,,Study,,,"Table, Graph, Spreadsheet, List, Map, Card" -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209971 -Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,False,,,,,list like,25700473 -DatasetView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""DatasetView_12345""" +Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats, Data Use Codes",False,,,Study,,,"Table, Spreadsheet" +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,"CA209971" +Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,False,,,,,list like,"31245678" +DatasetView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"DatasetView_67890" diff --git a/modules/dataset/template.csv b/modules/dataset/template.csv index c893cce0..7223c85e 100644 --- a/modules/dataset/template.csv +++ b/modules/dataset/template.csv @@ -1,15 +1,15 @@ Attribute,Description,Required,Validation Rules,Examples -Dataset Name,Name of the dataset,True,_None_,"""U.S. Census Data 2019""" -Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",True,unique,"""Financial Quarter 1 Sales Data 2020""" -Dataset Description,Description of the dataset.,False,_None_,"This dataset aggregates Netflix programming data from 2019 to 2021. It includes information on the titles of shows/movies, premier date, genres, duration, and audience rating. The data is derived from publicly available information and directly from Netflix. This dataset can be used for programming analysis, viewing trend investigations, and content recommendation research. Each row represents a unique title, and there are no missing values." -Dataset Design,The overall design of the dataset.,False,_None_,"'Cross-sectional', 'Time-series', 'Pooled Cross-sections', 'Panel data'" -Dataset Url,The url of where the dataset is stored.,True,url,https://www.kaggle.com/uciml/iris -[Dataset Assay](../valid_values/dataset.md#attribute-dataset-assay),"The assay the dataset is representative of. Multiple values permitted, comma separated.",True,list like,Dataset Assay: 16S Ribosomal Gene Sequencing Assay -[Dataset Species](../valid_values/dataset.md#attribute-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Dataset Species: Cat -[Dataset Tumor Type](../valid_values/dataset.md#attribute-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Dataset Tumor Type: Glioblastoma -[Dataset Tissue](../valid_values/dataset.md#attribute-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Dataset Tissue: Kidney +Dataset Name,Name of the dataset,True,_None_,RNA Sequencing of Lung Cancer Samples 2021 +Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",True,unique,GSE56789 +Dataset Description,Description of the dataset.,False,_None_,"This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages." +Dataset Design,The overall design of the dataset.,False,_None_,"'Cross-sectional' to compare gene expression in healthy vs. tumor tissues, or 'Time-series' to observe changes during treatment." +Dataset Url,The url of where the dataset is stored.,True,url,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789 +[Dataset Assay](../valid_values/dataset.md#attribute-dataset-assay),"The assay the dataset is representative of. Multiple values permitted, comma separated.",True,list like,RNA Sequencing +[Dataset Species](../valid_values/dataset.md#attribute-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Homo sapiens +[Dataset Tumor Type](../valid_values/dataset.md#attribute-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Glioblastoma +[Dataset Tissue](../valid_values/dataset.md#attribute-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Lung [Dataset File Formats](../valid_values/dataset.md#attribute-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,"""Dataset File Formats: AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" -Dataset View,The denormalized manifest for dataset submission.,False,_None_,"Table, Graph, Spreadsheet, List, Map, Card" +Dataset View,The denormalized manifest for dataset submission.,False,_None_,"Table, Spreadsheet" [Dataset Grant Number](../valid_values/dataset.md#attribute-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 -Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",False,list like,25700473 -DatasetView_id,A unique primary key that enables record updates using schematic.,True,unique,"""DatasetView_12345""" +Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",False,list like,31245678 +DatasetView_id,A unique primary key that enables record updates using schematic.,True,unique,DatasetView_67890 diff --git a/modules/education/annotationProperty.csv b/modules/education/annotationProperty.csv index 92ba9250..b3b130be 100644 --- a/modules/education/annotationProperty.csv +++ b/modules/education/annotationProperty.csv @@ -3,24 +3,23 @@ Educational Resource,Manifest for describing educational resources.,,"Component, Resource Title,Title of the item.,,,True,,,,OER,str,"""Introduction to Biology""" Resource Link,The URL or DOI that links to the item.,,,True,,,,OER,url,https://www.example.com/resource_page.html Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,True,,,,OER,list like,Resource Topic: Metabolism -Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,True,,,,OER,list like,"Attribute: Resource Activity Type -Example: Simulation" +Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,True,,,,OER,list like,Simulation Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,True,,,,OER,list like,Resource Primary Format: Video Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,True,,,,OER,list like,"""Resource Intended Use: Curriculum/Instruction""" Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,True,,,,OER,list like,Resource Primary Audience: Teacher Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,True,,,,OER,list like,Resource Educational Level: High School -Resource Description,Abstract or summary of the item.,,,True,,,,OER,str,"""This comprehensive e-book offering insights into advanced Python programming techniques is available for download. It covers numerous topics including object-oriented programming, data structures, algorithms, decorators, generators, exception handling, testing, and debugging.""" +Resource Description,Abstract or summary of the item.,,,True,,,,OER,str,"""This comprehensive e-book introduces readers to the world of biology""" Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,True,,,,OER,list like,Smithsonian Institution Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,True,,,,OER,list like::regex search [a-z]{2},Resource Language: en Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,True,,,,OER,list like,"John Smith, Jane Doe, XYZ Corporation" Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,MC2/grant,list like,Resource Grant Number: CA217655 -Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,False,,,,OER,list like,Climate Change Effects +Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,False,,,,OER,list like,Cancer Research Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,OER,list like,Resource License: Apache-2.0 Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,False,,,,OER,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. -Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,False,,,,OER,unique,Sales_Database +Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,False,,,,OER,unique,Nan Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,False,,,,OER,list like,ResourceID_56789 Resource Media Accessibility,"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.","Alternative Text, Audio Description, Braille, Captions, ChemML, Described Math, Display Transformability, Haptic, High Contrast, Large Print, Latex, Long Description, MathML, Nemeth Braille, Sign Language, Structural Navigation, Tactile Graphics, Text Transcript",,False,,,,OER,list like,"The educational video on the website provides 'Captions' for viewers with hearing impairments, making it an excellent example of 'Resource Media Accessibility'." Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,False,,,,OER,list like,"An example for the attribute 'Resource Access Hazard' could be a website for a video game which includes flashing images and intense sequences of motion. The site also uses loud sounds and high intensity simulations which some users can find distressing or harmful, particularly if they have conditions such as epilepsy or severe motion sickness. Therefore, the website has a potential ""Resource Access Hazard.""" -Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,False,,,,MC2/dataset,list like,"""Census Data 2010""" +Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,False,,,,MC2/dataset,list like,Nan Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,False,,,,MC2/tool,list like,https://www.khanacademy.org/ EducationalResource_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,ER_4567 diff --git a/modules/education/template.csv b/modules/education/template.csv index 7527a66a..7486f140 100644 --- a/modules/education/template.csv +++ b/modules/education/template.csv @@ -3,24 +3,23 @@ Educational Resource,Manifest for describing educational resources.,False,_None_ Resource Title,Title of the item.,True,str,"""Introduction to Biology""" Resource Link,The URL or DOI that links to the item.,True,url,https://www.example.com/resource_page.html [Resource Topic](../valid_values/education.md#attribute-resource-topic),"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.",True,list like,Resource Topic: Metabolism -[Resource Activity Type](../valid_values/education.md#attribute-resource-activity-type),The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,True,list like,"Attribute: Resource Activity Type -Example: Simulation" +[Resource Activity Type](../valid_values/education.md#attribute-resource-activity-type),The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,True,list like,Simulation [Resource Primary Format](../valid_values/education.md#attribute-resource-primary-format),"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.",True,list like,Resource Primary Format: Video [Resource Intended Use](../valid_values/education.md#attribute-resource-intended-use),The purpose of the material for education. Multiple values should be provided as a comma separated list.,True,list like,"""Resource Intended Use: Curriculum/Instruction""" [Resource Primary Audience](../valid_values/education.md#attribute-resource-primary-audience),The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,True,list like,Resource Primary Audience: Teacher [Resource Educational Level](../valid_values/education.md#attribute-resource-educational-level),"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.",True,list like,Resource Educational Level: High School -Resource Description,Abstract or summary of the item.,True,str,"""This comprehensive e-book offering insights into advanced Python programming techniques is available for download. It covers numerous topics including object-oriented programming, data structures, algorithms, decorators, generators, exception handling, testing, and debugging.""" +Resource Description,Abstract or summary of the item.,True,str,"""This comprehensive e-book introduces readers to the world of biology""" Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,True,list like,Smithsonian Institution [Resource Language](../valid_values/education.md#attribute-resource-language),Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,True,list like::regex search [a-z]{2},Resource Language: en Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,True,list like,"John Smith, Jane Doe, XYZ Corporation" [Resource Grant Number](../valid_values/education.md#attribute-resource-grant-number),"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.",True,list like,Resource Grant Number: CA217655 -Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",False,list like,Climate Change Effects +Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",False,list like,Cancer Research [Resource License](../valid_values/education.md#attribute-resource-license),"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.",False,list like,Resource License: Apache-2.0 Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",False,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. -Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",False,unique,Sales_Database +Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",False,unique,Nan Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",False,list like,ResourceID_56789 [Resource Media Accessibility](../valid_values/education.md#attribute-resource-media-accessibility),"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.",False,list like,"The educational video on the website provides 'Captions' for viewers with hearing impairments, making it an excellent example of 'Resource Media Accessibility'." [Resource Access Hazard](../valid_values/education.md#attribute-resource-access-hazard),"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.",False,list like,"An example for the attribute 'Resource Access Hazard' could be a website for a video game which includes flashing images and intense sequences of motion. The site also uses loud sounds and high intensity simulations which some users can find distressing or harmful, particularly if they have conditions such as epilepsy or severe motion sickness. Therefore, the website has a potential ""Resource Access Hazard.""" -Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",False,list like,"""Census Data 2010""" +Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",False,list like,Nan Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",False,list like,https://www.khanacademy.org/ EducationalResource_id,A unique primary key that enables record updates using schematic.,True,unique,ER_4567 diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index 1de2b89d..10a7214b 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -15,6 +15,5 @@ File Longitudinal Sequence Identifier,"The order in which this file was collecte File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,False,,,,,str,Seconds File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,False,,,,,num,"""2 hours 45 minutes""" File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,False,,,,,num,"""120 minutes""" -File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,True,,,,,,"Attribute: File Format -Example: CSV " +File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,True,,,,,,CSV File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,True,,,,,unique,"""Breast_Cancer_Gene_Expression.csv""" diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index 7716abe9..3e0d5b4f 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -1,14 +1,14 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Grant Name,Name of the grant,,,True,,,,,,"""COVID-19 Small Business Relief Fund""" +Grant Name,Name of the grant,,,True,,,,,,"""Research Grant for Cancer Genomics""" Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,True,,,,,regex search ^CA\d{6}$,DE-FG02-01ER45923 -Grant Abstract,Abstract for the grant,,,True,,,,,,"""This grant aims to study the effects of climate change on the migration patterns of bird species across North America. Over the course of the five-year project, the research team will employ cutting-edge tracking techniques and extensive field work to gather data. The findings will be used to predict future shifts in bird migration, and inform wildlife conservation strategies. In addition, this study will contribute to the broader understanding of the impacts of global warming on biodiversity and ecosystems.""" +Grant Abstract,Abstract for the grant,,,True,,,,,,"""Your grant abstract.""" Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,True,,,,,,R37 Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",False,,,,,,Grant View: Public -Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,True,,,,,list like,"Interaction, Viral/Bacterial Oncogenesis" -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,True,,,,,list like,Brigham and Womens Hospital -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,True,,,,,list like,Stanford -Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,True,,,,,list like,Dr. John Smith -Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,,Grant Consortium Name: HTAN +Grant Theme Name,Theme(s) associated with the grant. ,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,True,,,,,list like,"Interaction, Viral/Bacterial Oncogenesis" +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). ,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,True,,,,,list like,Brigham and Womens Hospital +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). ,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,True,,,,,list like,Stanford +Grant Investigator,Investigator(s) associated witht the grant. ,,,True,,,,,list like,Dr. John Smith +Grant Consortium Name,Consortium(s) associated with the grant. ,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,,Grant Consortium Name: HTAN GrantView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""GV12345""" Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,False,,,,,url,"Team: Project Management, Permission: Edit" Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,False,,,,,url,"Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant" diff --git a/modules/person/annotationProperty.csv b/modules/person/annotationProperty.csv index 795111d0..dda27643 100644 --- a/modules/person/annotationProperty.csv +++ b/modules/person/annotationProperty.csv @@ -13,8 +13,8 @@ Portal Display,Display content in CCKP,"FALSE, TRUE",,True,,,,,,Portal Display: Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",False,,,Grant View,,,Public Profile View Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,Person Grant Number: CA202177 Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,list like,PDMC -Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Harry Potter and the Sorcerer's Stone"" by J.K. Rowling, ""1984"" by George Orwell, ""To Kill a Mockingbird"" by Harper Lee" -Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"Name: John Doe,Gender: Male, Birthday: July 1, 1980, Nationality: American, Address: 123 Main Street, Anytown, USA, Phone Number: 123-456-7890, Email: johndoe@email.com, Occupation: Software Engineer, Marital Status: Married, Number of Children: 2" -Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"Hammer, Screwdriver, Laptop, Paintbrush, Scissors" -Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"College textbooks, online courses, research papers, educational software, library access, tutoring services, webinars, academic journals, study guides, educational workshops, scholarship information." +Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"""23761710,23761712,23762511" +Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"GSE12345" +Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"R Studio, Python, Jupyter Notebook" +Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,Nan PersonView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,PersonView_12345 diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index 1bd8dd24..cac68af6 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -5,14 +5,14 @@ Pubmed Id,The PubMed identifier associated with the publication.,,,True,,,,,uniq Pubmed Url,Pubmed URL for the publication,,,True,,,,,url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 Publication Title,Title of the publication,,,True,,,,,,"""The New York Times""" Publication Year,Year of the publication,,,True,,,,,,2018 -Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Climate Change, Global Warming, Greenhouse Gases, Environmental Impact, Sustainability""" -Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,True,,,,,list like,"""J.K. Rowling, Stephen King, Jane Austen""" -Publication Abstract,The abstract of the publication.,,,True,,,,,,"""This article explores the developmental effects of cannabinoid exposure in zebrafish, one of the important vertebrate model systems in functional and comparative genomics. Drawing from a series of rigorous molecular analysis, the study establishes that prolonged exposure to cannabinoids impairs critical developmental processes at particular stages. The findings of this research not only contribute to our understanding of zebrafish neurobiology but also raise critical implications for human health, particularly in the context of increasing medicinal use of cannabinoids.""" -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,Publication Assay: In Vivo Bioluminescence +Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Cancer Pathways, Inflammation, Tumor Microenvironment""" +Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,True,,,,,list like,"""Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter""" +Publication Abstract,The abstract of the publication.,,,True,,,,,,Nan +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,In Vivo Bioluminescence Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,True,,,,,list like,Acute Lymphoblastic Leukemia -Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,True,,,,,list like,Publication Tissue: Brain -Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,True,,,,,,Publication Accessibility: Open Access +Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,True,,,,,list like,Brain +Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,True,,,,,,Open Access Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility",False,,,Study,,,Online -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,Publication Grant Number: CA202123 -Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Annual Crime Report 2020""" -PublicationView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,1012 +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA202123 +Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"GSE45678, DOI:10.1000/exampledataset" +PublicationView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,PublicationView_45678 diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index 27c1538c..c9fc9136 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -1,16 +1,14 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination",False,,,Study,,,100Hz -DSP Dataset Name,Name of the dataset,,,True,,,,,str,DSP_Dataset_Sales_Analysis_2020 -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",,,False,,,,,unique,"""Sales_Data_2020""" -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,"In the DSP (Data Submission Portal) dataset, the Assay attribute for my example would be 'Flow Cytometry'. This assay allows for detailed multiparametric analysis of thousands of individual cells in a fast and efficient manner." -DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,DSP Dataset Species: Asian Elephant -DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,"Attribute: DSP Dataset Tumor Type -Example: Lung Carcinoma" +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination",False,,,Study,,,NaN +DSP Dataset Name,Name of the dataset,,,True,,,,,str,DSP_Dataset_Lung_Research_2021 +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",,,False,,,,,unique,Syn123456 +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,"3D Bioprinting" +DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,Asian Elephant +DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,Lung Carcinoma DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Brain -DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,"Attribute: DSP Dataset File Formats -Example: CSV" +DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,CSV DataDSP_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,DataDSP_56789 -DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,False,,,,,list like,DSP Dataset Level: Level 3 +DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,False,,,,,list like,Level 3 DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,False,,,,,num,25 DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,False,,,,,num,50000 DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,False,,,,,num,12 @@ -21,5 +19,5 @@ DSP Dataset Grant Number,"Grant number(s) associated with the dataset's developm DSP Dataset Url,The url of where the dataset is or will be stored.,,,False,,,,,url,https://www.example.com/dataset/dsp1234 DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,False,,,,Data Use Ontology,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,False,,,,,regex match syn\d+,"DSP IRB Form V2.0, 2020" -DSP Dataset Description,A text description of the files contained in this dataset.,,,False,,,,,str,"The DSP (Digital Signal Processing) Dataset is a collection of preprocessed data from audio signals. It includes various features extracted from these signals such as frequency components, amplitude modulation, spectral content, etc. The data can be used for training machine learning models in applications like speech recognition, music classification, sound source localization, and other audio processing tasks." +DSP Dataset Description,A text description of the files contained in this dataset.,,,False,,,,,str,"A quick description of your data sharing plan." DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,False,,,,,str,"""/home/user/datasets/dsp_output""" diff --git a/modules/sharingPlans/template.csv b/modules/sharingPlans/template.csv index b9fdbdde..01497d81 100644 --- a/modules/sharingPlans/template.csv +++ b/modules/sharingPlans/template.csv @@ -1,16 +1,14 @@ Attribute,Description,Required,Validation Rules,Examples -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_,100Hz -DSP Dataset Name,Name of the dataset,True,str,DSP_Dataset_Sales_Analysis_2020 -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",False,unique,"""Sales_Data_2020""" -[DSP Dataset Assay](../valid_values/sharingPlans.md#attribute-dsp-dataset-assay),"The type of data contained in this group of files. Multiple values permitted, comma separated.",True,list like,"In the DSP (Data Submission Portal) dataset, the Assay attribute for my example would be 'Flow Cytometry'. This assay allows for detailed multiparametric analysis of thousands of individual cells in a fast and efficient manner." -[DSP Dataset Species](../valid_values/sharingPlans.md#attribute-dsp-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,DSP Dataset Species: Asian Elephant -[DSP Dataset Tumor Type](../valid_values/sharingPlans.md#attribute-dsp-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,"Attribute: DSP Dataset Tumor Type -Example: Lung Carcinoma" +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_, +DSP Dataset Name,Name of the dataset,True,str,DSP_Dataset_Lung_Research_2021 +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",False,unique,Syn123456 +[DSP Dataset Assay](../valid_values/sharingPlans.md#attribute-dsp-dataset-assay),"The type of data contained in this group of files. Multiple values permitted, comma separated.",True,list like,3D Bioprinting +[DSP Dataset Species](../valid_values/sharingPlans.md#attribute-dsp-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Asian Elephant +[DSP Dataset Tumor Type](../valid_values/sharingPlans.md#attribute-dsp-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Lung Carcinoma [DSP Dataset Tissue](../valid_values/sharingPlans.md#attribute-dsp-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Brain -[DSP Dataset File Formats](../valid_values/sharingPlans.md#attribute-dsp-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,"Attribute: DSP Dataset File Formats -Example: CSV" +[DSP Dataset File Formats](../valid_values/sharingPlans.md#attribute-dsp-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,CSV DataDSP_id,A unique primary key that enables record updates using schematic.,True,unique,DataDSP_56789 -[DSP Dataset Level](../valid_values/sharingPlans.md#attribute-dsp-dataset-level),The level of processing associated with the dataset.,False,list like,DSP Dataset Level: Level 3 +[DSP Dataset Level](../valid_values/sharingPlans.md#attribute-dsp-dataset-level),The level of processing associated with the dataset.,False,list like,Level 3 DSP Number of Files,The number of files that will be uploaded as part of this dataset.,False,num,25 DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,False,num,50000 DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,False,num,12 @@ -21,5 +19,5 @@ DSP Planned Release Date,The projected date that marks the end of any requested DSP Dataset Url,The url of where the dataset is or will be stored.,False,url,https://www.example.com/dataset/dsp1234 [DSP Data Use Codes](../valid_values/sharingPlans.md#attribute-dsp-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ",False,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,False,regex match syn\\d+,"DSP IRB Form V2.0, 2020" -DSP Dataset Description,A text description of the files contained in this dataset.,False,str,"The DSP (Digital Signal Processing) Dataset is a collection of preprocessed data from audio signals. It includes various features extracted from these signals such as frequency components, amplitude modulation, spectral content, etc. The data can be used for training machine learning models in applications like speech recognition, music classification, sound source localization, and other audio processing tasks." +DSP Dataset Description,A text description of the files contained in this dataset.,False,str,A quick description of your data sharing plan. DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,False,str,"""/home/user/datasets/dsp_output""" diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index 52d31dfb..01fa211a 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -1,14 +1,14 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Reuse Statement, Study Data Use Codes, Study License",False,,,Grant View,,,"""Physics""" -Study Name,Name of the study,,,True,,,,,str,"""Effects of Diet and Exercise on Obesity""" -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,True,,,,,str,"""Analysis of Cardiovascular Response during Exercise""" -Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,True,,,,,list like,"Dr. John Smith, PhD in Neuroscience, University of California" +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Reuse Statement, Study Data Use Codes, Study License",False,,,Grant View,,,"""ProjectView_45678""" +Study Name,Name of the study,,,True,,,,,str,"""Effects of Diet and Exercise on Cancer""" +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,True,,,,,str,"""Analysis of Cancerous Cell Response during Exercise""" +Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,True,,,,,list like,"Dr. Jane Smith" Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,False,,,,,str,"""Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced.""" Study_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,STUDY_2021_01Biology Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,True,,,,CDS/collection,int,5000 Study De-identification Method Type,General description of the de-identification method,"Manual , Semiautomatic , Automatic , Not applicable",,True,,,,CDS/collection,,Manual -Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,False,,,,CDS/collection,str,"The study de-identification method description might be something like: ""All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable.""" +Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,False,,,,CDS/collection,str,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." Study De-identification Method Software,Software that was used to de-identify the images (if used),,,False,,,,CDS/collection,str,"""Safe Harbor Method Software""" Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,False,,,,CDS/collection,str,phs000424.v7.p2 Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,False,,,,CDS/collection,,CC BY-NC 4.0 -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,False,,,,Data Use Ontology, list like,Study Data Use Codes: NCU +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,False,,,,Data Use Ontology, list like,NCU diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index c02f0dd2..7dde7bfe 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -1,45 +1,41 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,False,,,,biotoolsschema,,"Tool Accessibility: Open Access (With Restrictions) - The company's data analytics tool is open to all employees, but access to certain sensitive information within the tool is restricted to upper management." +Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,False,,,,biotoolsschema,,Nan Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",,,False,,,,biotoolsschema,,"""export GIT_TRACE=1""" -Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,False,,,,schema.org,"list like, url","CPU: Intel i7, RAM: 16GB, Hard Disk Space: 500GB, Operating System: Windows 10, GPU: Nvidia GTX 1060 6GB, Internet Connection: Broadband." +Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,False,,,,schema.org,"list like, url","Python, pip, pandas, matplotlib" Tool Cost,Monetary cost of acquiring the software.,"Commercial, Free of Charge, Free of Charge (With Restrictions)",,False,,,,biotoolsschema,,Commercial Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",,,False,,,,schema.org,date,11/04/2021 15:30:45 -Tool Description,Textual description of the tool.,,,True,,,,biotoolsschema,,"This powerful electric drill comes with a 10 amp motor, providing high performance in heavy-duty applications. This tool possesses a 1/2-inch all-metal, single-sleeve, ratcheting keyless chuck with automatic spindle lock that provides greater bit retention and tool-free convenience. Additionally, it is designed with a soft grip handle and two-finger trigger for increased comfort and greater control. This drill also features a 360-degree locking side handle with soft grip for increased maneuverability and control." +Tool Description,Textual description of the tool.,,,True,,,,biotoolsschema,,"This is a Python tool that ..." Tool Documentation Note,Comment about the documentation.,,,False,,,,biotoolsschema,,"""This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades.""" Tool Documentation Type,"Type of documentation that is linked to. Multiple values permitted, comma separated.","API Documentation, Citation Instructions, Code of Conduct, Command-Line Options, Contributions Policy, FAQ, General, Governance, Installation Instructions, Other, Quick Start Guide, Release Notes, Terms of Use, Training Material, User Manual",,False,,,,biotoolsschema,list like,API Documentation -Tool Documentation Url,Link to documentation on the web for the tool.,,,False,,,,biotoolsschema,,"""https://docs.google.com/spreadsheets/""" +Tool Documentation Url,Link to documentation on the web for the tool.,,,False,,,,biotoolsschema,,"""https://docs.example.com/""" Tool Download Note,Comment about the download.,,,False,,,,biotoolsschema,,"""Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software.""" Tool Download Type,"The type of data, information, or system that is obtained when the link is resolved.","API Specification, Binaries, Biological Data, Command-Line Specification, Container File, Downloads Page, Icon, Other, Screenshot, Software Package, Source Code, Test Data, Test Script, Tool Wrapper (CWL), Tool Wrapper (Galaxy), Tool Wrapper (Taverna), Tool wrapper (Other), VM Image",,False,,,,biotoolsschema,,API Specification Tool Download Url,Link to download (or repo providing a download) for the software.,,,False,,,,biotoolsschema,,https://example.com/tool-download/version2.0 Tool Download Version,Version information (typically a version number) of the software applicable to this download.,,,False,,,,biotoolsschema,,1.0.3 -Tool Entity Name,Name of the entities that may be credited,,,False,,,,,list like,Hammer -Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,True,,,,biotoolsschema,list like,"For an open-source software project, different individuals or teams could take on various roles: the 'Developer' builds and enhances the software, the 'Maintainer' ensures it is debugged and up to date, the 'Provider' supplies the software to users, the 'Documentor' creates guides and manuals, 'Contributors' improve the software, the 'Support' team assists with technical issues, and the 'Primary Contact' handles overall inquiries." +Tool Entity Name,Name of the entities that may be credited,,,False,,,,,list like,"Python, pip" +Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,True,,,,biotoolsschema,list like,"Developer, Maintainer, Provider, Documentor, Contributor" Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,True,,,,biotoolsschema,list like,Person -Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,False,,,,biotoolsschema,,"""The tool is primarily used for cutting hard materials, but can also be utilized for shaping, smoothing, and finishing tasks depending on the type of blade or attachment used.""" +Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,False,,,,biotoolsschema,,"The tool is used to programmatically ..." Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209975 -Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,True,,,,biotoolsschema,url,https://www.microsoft.com/en-us/windows/ -Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,"Attribute: Tool Input Data -Example: DNA Sequence" -Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,"Attribute: Tool Input Format -Example: CSV" +Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,True,,,,biotoolsschema,url,https://www.example.com/ +Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,"DNA Sequence" +Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,CSV Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,False,,,,biotoolsschema,list like,Tool Language: Python -Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,biotoolsschema,list like,Tool License: Apache-2.0 +Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,biotoolsschema,list like,Apache-2.0 Tool Link Note,Comment about the link.,,,False,,,,biotoolsschema,,"""This tool cannot be accessed without a valid institutional login.""" -Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,False,,,,biotoolsschema,list like,Tool Link Type: Social Media +Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,False,,,,biotoolsschema,list like,Social Media Tool Link Url,A link of some relevance to the software (URL).,,,False,,,,biotoolsschema,,https://www.example.com/tool-info.html Tool Name,Canonical tool name provided by the tool developer or service provider.,,,True,,,,biotoolsschema,unique,Adobe Photoshop Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,False,,,,biotoolsschema,list like,Linux -Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,True,,,,biotoolsschema,list like,"Attribute: Tool Operation -Example: DNA Barcoding" +Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,True,,,,biotoolsschema,list like,"DNA Barcoding" Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,Gene ID (NCBI): NM_001282392.1 -Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,"Attribute: Tool Output Format -Example: FASTQ" +Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,"FASTQ" Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,False,,,,CWL,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." -Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,True,,,,CWL,,Tool Package Dependencies Present: True +Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,True,,,,CWL,,True Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209975 Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,False,,,,,int,26760201 Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,True,,,,schema.org,date,"January 5, 2022" -Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,False,,,,biotoolsschema,list like,Tool Topic: Bioinformatics +Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,False,,,,biotoolsschema,list like,Bioinformatics Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,False,,,,biotoolsschema,list like,Command-Line Tool Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,False,,,,biotoolsschema,,3.2.1 Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, Study key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",False,,,Study,,,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." From 02342701dfa4c050d8ba1eb177e6a5a65d262596 Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Wed, 5 Feb 2025 17:54:53 -0600 Subject: [PATCH 005/106] save progress on editing the annotation properties --- modules/file/template.csv | 3 +-- modules/grant/template.csv | 14 ++++++------- modules/person/template.csv | 8 +++---- modules/publication/template.csv | 18 ++++++++-------- modules/study/template.csv | 12 +++++------ modules/tool/template.csv | 36 ++++++++++++++------------------ 6 files changed, 43 insertions(+), 48 deletions(-) diff --git a/modules/file/template.csv b/modules/file/template.csv index 446d810f..5c26b7d0 100644 --- a/modules/file/template.csv +++ b/modules/file/template.csv @@ -15,6 +15,5 @@ File Longitudinal Sequence Identifier,"The order in which this file was collecte File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,False,str,Seconds File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,False,num,"""2 hours 45 minutes""" File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,False,num,"""120 minutes""" -[File Format](../valid_values/file.md#attribute-file-format),The format of the file described by this entry.,True,_None_,"Attribute: File Format -Example: CSV " +[File Format](../valid_values/file.md#attribute-file-format),The format of the file described by this entry.,True,_None_,CSV File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",True,unique,"""Breast_Cancer_Gene_Expression.csv""" diff --git a/modules/grant/template.csv b/modules/grant/template.csv index e962013a..81f79009 100644 --- a/modules/grant/template.csv +++ b/modules/grant/template.csv @@ -1,14 +1,14 @@ Attribute,Description,Required,Validation Rules,Examples -Grant Name,Name of the grant,True,_None_,"""COVID-19 Small Business Relief Fund""" +Grant Name,Name of the grant,True,_None_,"""Research Grant for Cancer Genomics""" Grant Number,"Number of the grant (i.e. ""CA------"" format)",True,regex search ^CA\\d{6}$,DE-FG02-01ER45923 -Grant Abstract,Abstract for the grant,True,_None_,"""This grant aims to study the effects of climate change on the migration patterns of bird species across North America. Over the course of the five-year project, the research team will employ cutting-edge tracking techniques and extensive field work to gather data. The findings will be used to predict future shifts in bird migration, and inform wildlife conservation strategies. In addition, this study will contribute to the broader understanding of the impacts of global warming on biodiversity and ecosystems.""" +Grant Abstract,Abstract for the grant,True,_None_,"""Your grant abstract.""" [Grant Type](../valid_values/grant.md#attribute-grant-type),Type of grant,True,_None_,R37 Grant View,The denormalized manifest for grant submission.,False,_None_,Grant View: Public -[Grant Theme Name](../valid_values/grant.md#attribute-grant-theme-name),Theme(s) associated with the grant. 1...*,True,list like,"Interaction, Viral/Bacterial Oncogenesis" -[Grant Institution Name](../valid_values/grant.md#attribute-grant-institution-name),The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,True,list like,Brigham and Womens Hospital -[Grant Institution Alias](../valid_values/grant.md#attribute-grant-institution-alias),The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,True,list like,Stanford -Grant Investigator,Investigator(s) associated witht the grant. 1...*,True,list like,Dr. John Smith -[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. 1...1,True,_None_,Grant Consortium Name: HTAN +[Grant Theme Name](../valid_values/grant.md#attribute-grant-theme-name),Theme(s) associated with the grant. ,True,list like,"Interaction, Viral/Bacterial Oncogenesis" +[Grant Institution Name](../valid_values/grant.md#attribute-grant-institution-name),The full name of the institution(s) associated with the grant. (e.g. Harvard University). ,True,list like,Brigham and Womens Hospital +[Grant Institution Alias](../valid_values/grant.md#attribute-grant-institution-alias),The alias of the institution(s) associated with the grant (e.g. UCSD). ,True,list like,Stanford +Grant Investigator,Investigator(s) associated witht the grant. ,True,list like,Dr. John Smith +[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. ,True,_None_,Grant Consortium Name: HTAN GrantView_id,A unique primary key that enables record updates using schematic.,True,unique,"""GV12345""" Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",False,url,"Team: Project Management, Permission: Edit" Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",False,url,"Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant" diff --git a/modules/person/template.csv b/modules/person/template.csv index 4e0be9e7..6ce5eb5c 100644 --- a/modules/person/template.csv +++ b/modules/person/template.csv @@ -13,8 +13,8 @@ Last Known Institution,Last known institutional affiliation of the individual.,T Person View,The denormalized manifest for person submission.,False,_None_,Public Profile View [Person Grant Number](../valid_values/person.md#attribute-person-grant-number),"Grant number(s) associated with the person. Multiple values permitted, comma separated.",True,list like,Person Grant Number: CA202177 [Person Consortium Name](../valid_values/person.md#attribute-person-consortium-name),"Consortium(s) associated with the person. Multiple values permitted, comma separated.",True,list like,PDMC -Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",False,list like,"""Harry Potter and the Sorcerer's Stone"" by J.K. Rowling, ""1984"" by George Orwell, ""To Kill a Mockingbird"" by Harper Lee" -Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",False,list like,"Name: John Doe,Gender: Male, Birthday: July 1, 1980, Nationality: American, Address: 123 Main Street, Anytown, USA, Phone Number: 123-456-7890, Email: johndoe@email.com, Occupation: Software Engineer, Marital Status: Married, Number of Children: 2" -Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",False,list like,"Hammer, Screwdriver, Laptop, Paintbrush, Scissors" -Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",False,list like,"College textbooks, online courses, research papers, educational software, library access, tutoring services, webinars, academic journals, study guides, educational workshops, scholarship information." +Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",False,list like,"""23761710,23761712,23762511" +Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",False,list like,GSE12345 +Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",False,list like,"R Studio, Python, Jupyter Notebook" +Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",False,list like,Nan PersonView_id,A unique primary key that enables record updates using schematic.,True,unique,PersonView_12345 diff --git a/modules/publication/template.csv b/modules/publication/template.csv index 41a70851..cda87329 100644 --- a/modules/publication/template.csv +++ b/modules/publication/template.csv @@ -5,14 +5,14 @@ Pubmed Id,The PubMed identifier associated with the publication.,True,unique,265 Pubmed Url,Pubmed URL for the publication,True,url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 Publication Title,Title of the publication,True,_None_,"""The New York Times""" Publication Year,Year of the publication,True,_None_,2018 -Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",False,list like,"""Climate Change, Global Warming, Greenhouse Gases, Environmental Impact, Sustainability""" -Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",True,list like,"""J.K. Rowling, Stephen King, Jane Austen""" -Publication Abstract,The abstract of the publication.,True,_None_,"""This article explores the developmental effects of cannabinoid exposure in zebrafish, one of the important vertebrate model systems in functional and comparative genomics. Drawing from a series of rigorous molecular analysis, the study establishes that prolonged exposure to cannabinoids impairs critical developmental processes at particular stages. The findings of this research not only contribute to our understanding of zebrafish neurobiology but also raise critical implications for human health, particularly in the context of increasing medicinal use of cannabinoids.""" -[Publication Assay](../valid_values/publication.md#attribute-publication-assay),"Assay(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Publication Assay: In Vivo Bioluminescence +Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",False,list like,"""Cancer Pathways, Inflammation, Tumor Microenvironment""" +Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",True,list like,"""Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter""" +Publication Abstract,The abstract of the publication.,True,_None_,Nan +[Publication Assay](../valid_values/publication.md#attribute-publication-assay),"Assay(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,In Vivo Bioluminescence [Publication Tumor Type](../valid_values/publication.md#attribute-publication-tumor-type),"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Acute Lymphoblastic Leukemia -[Publication Tissue](../valid_values/publication.md#attribute-publication-tissue),"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Publication Tissue: Brain -[Publication Accessibility](../valid_values/publication.md#attribute-publication-accessibility),Whether there are non-monetary restrictions on accessing an the publication.,True,_None_,Publication Accessibility: Open Access +[Publication Tissue](../valid_values/publication.md#attribute-publication-tissue),"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Brain +[Publication Accessibility](../valid_values/publication.md#attribute-publication-accessibility),Whether there are non-monetary restrictions on accessing an the publication.,True,_None_,Open Access Publication View,The denormalized manifest for publication submission.,False,_None_,Online -[Publication Grant Number](../valid_values/publication.md#attribute-publication-grant-number),"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.",True,list like,Publication Grant Number: CA202123 -Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",False,list like,"""Annual Crime Report 2020""" -PublicationView_id,A unique primary key that enables record updates using schematic.,True,unique,1012 +[Publication Grant Number](../valid_values/publication.md#attribute-publication-grant-number),"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.",True,list like,CA202123 +Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",False,list like,"GSE45678, DOI:10.1000/exampledataset" +PublicationView_id,A unique primary key that enables record updates using schematic.,True,unique,PublicationView_45678 diff --git a/modules/study/template.csv b/modules/study/template.csv index 3388db98..90ba2801 100644 --- a/modules/study/template.csv +++ b/modules/study/template.csv @@ -1,14 +1,14 @@ Attribute,Description,Required,Validation Rules,Examples -Study,Studies associated with a grant,False,_None_,"""Physics""" -Study Name,Name of the study,True,str,"""Effects of Diet and Exercise on Obesity""" -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",True,str,"""Analysis of Cardiovascular Response during Exercise""" -Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,True,list like,"Dr. John Smith, PhD in Neuroscience, University of California" +Study,Studies associated with a grant,False,_None_,"""ProjectView_45678""" +Study Name,Name of the study,True,str,"""Effects of Diet and Exercise on Cancer""" +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",True,str,"""Analysis of Cancerous Cell Response during Exercise""" +Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,True,list like,Dr. Jane Smith Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",False,str,"""Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced.""" Study_id,A unique primary key that enables record updates using schematic.,True,unique,STUDY_2021_01Biology Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,True,int,5000 [Study De-identification Method Type](../valid_values/study.md#attribute-study-de-identification-method-type),General description of the de-identification method,True,_None_,Manual -Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,False,str,"The study de-identification method description might be something like: ""All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable.""" +Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,False,str,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." Study De-identification Method Software,Software that was used to de-identify the images (if used),False,str,"""Safe Harbor Method Software""" Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,False,str,phs000424.v7.p2 [Study License](../valid_values/study.md#attribute-study-license),Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,False,_None_,CC BY-NC 4.0 -[Study Data Use Codes](../valid_values/study.md#attribute-study-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes",False, list like,Study Data Use Codes: NCU +[Study Data Use Codes](../valid_values/study.md#attribute-study-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes",False, list like,NCU diff --git a/modules/tool/template.csv b/modules/tool/template.csv index 34c1edbc..8c1d92e2 100644 --- a/modules/tool/template.csv +++ b/modules/tool/template.csv @@ -1,45 +1,41 @@ Attribute,Description,Required,Validation Rules,Examples -[Tool Accessibility](../valid_values/tool.md#attribute-tool-accessibility),Whether there are non-monetary restrictions on accessing an online service.,False,_None_,"Tool Accessibility: Open Access (With Restrictions) - The company's data analytics tool is open to all employees, but access to certain sensitive information within the tool is restricted to upper management." +[Tool Accessibility](../valid_values/tool.md#attribute-tool-accessibility),Whether there are non-monetary restrictions on accessing an online service.,False,_None_,Nan Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",False,_None_,"""export GIT_TRACE=1""" -Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",False,"list like, url","CPU: Intel i7, RAM: 16GB, Hard Disk Space: 500GB, Operating System: Windows 10, GPU: Nvidia GTX 1060 6GB, Internet Connection: Broadband." +Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",False,"list like, url","Python, pip, pandas, matplotlib" [Tool Cost](../valid_values/tool.md#attribute-tool-cost),Monetary cost of acquiring the software.,False,_None_,Commercial Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",False,date,11/04/2021 15:30:45 -Tool Description,Textual description of the tool.,True,_None_,"This powerful electric drill comes with a 10 amp motor, providing high performance in heavy-duty applications. This tool possesses a 1/2-inch all-metal, single-sleeve, ratcheting keyless chuck with automatic spindle lock that provides greater bit retention and tool-free convenience. Additionally, it is designed with a soft grip handle and two-finger trigger for increased comfort and greater control. This drill also features a 360-degree locking side handle with soft grip for increased maneuverability and control." +Tool Description,Textual description of the tool.,True,_None_,This is a Python tool that ... Tool Documentation Note,Comment about the documentation.,False,_None_,"""This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades.""" [Tool Documentation Type](../valid_values/tool.md#attribute-tool-documentation-type),"Type of documentation that is linked to. Multiple values permitted, comma separated.",False,list like,API Documentation -Tool Documentation Url,Link to documentation on the web for the tool.,False,_None_,"""https://docs.google.com/spreadsheets/""" +Tool Documentation Url,Link to documentation on the web for the tool.,False,_None_,"""https://docs.example.com/""" Tool Download Note,Comment about the download.,False,_None_,"""Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software.""" [Tool Download Type](../valid_values/tool.md#attribute-tool-download-type),"The type of data, information, or system that is obtained when the link is resolved.",False,_None_,API Specification Tool Download Url,Link to download (or repo providing a download) for the software.,False,_None_,https://example.com/tool-download/version2.0 Tool Download Version,Version information (typically a version number) of the software applicable to this download.,False,_None_,1.0.3 -Tool Entity Name,Name of the entities that may be credited,False,list like,Hammer -[Tool Entity Role](../valid_values/tool.md#attribute-tool-entity-role),"Role performed by entity that is credited, e.g. β€œDeveloper”",True,list like,"For an open-source software project, different individuals or teams could take on various roles: the 'Developer' builds and enhances the software, the 'Maintainer' ensures it is debugged and up to date, the 'Provider' supplies the software to users, the 'Documentor' creates guides and manuals, 'Contributors' improve the software, the 'Support' team assists with technical issues, and the 'Primary Contact' handles overall inquiries." +Tool Entity Name,Name of the entities that may be credited,False,list like,"Python, pip" +[Tool Entity Role](../valid_values/tool.md#attribute-tool-entity-role),"Role performed by entity that is credited, e.g. β€œDeveloper”",True,list like,"Developer, Maintainer, Provider, Documentor, Contributor" [Tool Entity Type](../valid_values/tool.md#attribute-tool-entity-type),"Types of entities that may be credited, e.g. β€˜Person’.",True,list like,Person -Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",False,_None_,"""The tool is primarily used for cutting hard materials, but can also be utilized for shaping, smoothing, and finishing tasks depending on the type of blade or attachment used.""" +Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",False,_None_,The tool is used to programmatically ... [Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 -Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",True,url,https://www.microsoft.com/en-us/windows/ -[Tool Input Data](../valid_values/tool.md#attribute-tool-input-data),"Type of primary input data. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Input Data -Example: DNA Sequence" -[Tool Input Format](../valid_values/tool.md#attribute-tool-input-format),"Allowed format(s) of the input data. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Input Format -Example: CSV" +Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",True,url,https://www.example.com/ +[Tool Input Data](../valid_values/tool.md#attribute-tool-input-data),"Type of primary input data. Multiple values permitted, comma separated.",True,list like,DNA Sequence +[Tool Input Format](../valid_values/tool.md#attribute-tool-input-format),"Allowed format(s) of the input data. Multiple values permitted, comma separated.",True,list like,CSV [Tool Language](../valid_values/tool.md#attribute-tool-language),"Name of programming language the software source code was written in. Multiple values permitted, comma separated.",False,list like,Tool Language: Python -[Tool License](../valid_values/tool.md#attribute-tool-license),"Software or data usage license. Multiple values permitted, comma separated.",False,list like,Tool License: Apache-2.0 +[Tool License](../valid_values/tool.md#attribute-tool-license),"Software or data usage license. Multiple values permitted, comma separated.",False,list like,Apache-2.0 Tool Link Note,Comment about the link.,False,_None_,"""This tool cannot be accessed without a valid institutional login.""" -[Tool Link Type](../valid_values/tool.md#attribute-tool-link-type),"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.",False,list like,Tool Link Type: Social Media +[Tool Link Type](../valid_values/tool.md#attribute-tool-link-type),"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.",False,list like,Social Media Tool Link Url,A link of some relevance to the software (URL).,False,_None_,https://www.example.com/tool-info.html Tool Name,Canonical tool name provided by the tool developer or service provider.,True,unique,Adobe Photoshop [Tool Operating System](../valid_values/tool.md#attribute-tool-operating-system),"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.",False,list like,Linux -[Tool Operation](../valid_values/tool.md#attribute-tool-operation),"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Operation -Example: DNA Barcoding" +[Tool Operation](../valid_values/tool.md#attribute-tool-operation),"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.",True,list like,DNA Barcoding [Tool Output Data](../valid_values/tool.md#attribute-tool-output-data),"Type of primary output data. Multiple values permitted, comma separated.",True,list like,Gene ID (NCBI): NM_001282392.1 -[Tool Output Format](../valid_values/tool.md#attribute-tool-output-format),"Allowed format(s) of the output data. Multiple values permitted, comma separated.",True,list like,"Attribute: Tool Output Format -Example: FASTQ" +[Tool Output Format](../valid_values/tool.md#attribute-tool-output-format),"Allowed format(s) of the output data. Multiple values permitted, comma separated.",True,list like,FASTQ Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",False,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." -[Tool Package Dependencies Present](../valid_values/tool.md#attribute-tool-package-dependencies-present),Indicates whether the required package dependencies for tool are present.,True,_None_,Tool Package Dependencies Present: True +[Tool Package Dependencies Present](../valid_values/tool.md#attribute-tool-package-dependencies-present),Indicates whether the required package dependencies for tool are present.,True,_None_,True [Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,False,int,26760201 Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,True,date,"January 5, 2022" -[Tool Topic](../valid_values/tool.md#attribute-tool-topic),"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.",False,list like,Tool Topic: Bioinformatics +[Tool Topic](../valid_values/tool.md#attribute-tool-topic),"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.",False,list like,Bioinformatics [Tool Type](../valid_values/tool.md#attribute-tool-type),"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.",False,list like,Command-Line Tool Tool Version,Version information (typically a version number) of the software applicable to this entry.,False,_None_,3.2.1 Tool View,The denormalized manifest for tool submission.,False,_None_,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." From 85b6a0cf339b7a11e8e1827c41cc2c37a653082b Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Thu, 6 Feb 2025 11:03:09 -0600 Subject: [PATCH 006/106] add tutorial fix up tables --- .../dca_demo_biospecimen_template.png | Bin 0 -> 207280 bytes docs/assets/dca-tutorial/select_dcc.png | Bin 0 -> 289100 bytes docs/assets/dca-tutorial/select_folder.png | Bin 0 -> 261081 bytes docs/assets/dca-tutorial/select_project.png | Bin 0 -> 233868 bytes docs/assets/dca-tutorial/select_template.png | Bin 0 -> 349225 bytes .../dca-tutorial/validate_submit_metadata.png | Bin 0 -> 381062 bytes docs/home/tutorial.md | 95 ++++++++++++------ modules/dataset/annotationProperty.csv | 2 +- modules/education/annotationProperty.csv | 16 +-- modules/file/annotationProperty.csv | 8 +- modules/grant/annotationProperty.csv | 8 +- modules/person/annotationProperty.csv | 10 +- modules/tool/annotationProperty.csv | 4 +- 13 files changed, 90 insertions(+), 53 deletions(-) create mode 100644 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zFUt*2G<)-H!#!2AtUj}3Ir|53nLkI1dlmf&iLwKPd0xYwQ;?VSm|lNp6-#M1eC_>Z z@mwI_nB8yM3Ap_Bx_*pZ+4-~pfh_1biA|J-(VvSi0}d#E6@D~DQ%<~R%F~c3$Bac* zzBF|--}uW3YAWkuW(@0vxDEWU+>uqhF097nPh&zsdAt&UyzYH>*}r$7vo=`-71AWX zqUM}fsv2cs1hjfnd+G~0h12m-|3iM-PZ#h*;C`xC&dywU)ik4mf)x$_(Fky9i~}&9 zNfeLWbswZl@&r)h7Rc9{4~-nYzGk{+cRszo@SUZdWuMpbR}`UNmArVUBu))Ko-+LU z`2I3;aQF-lKdDU+f217omY%H^D>1~+&z+KkVU*UIMrt^6dcsfJ%eDrr# z^@HE(hzdwdzms!Pk+Ym@ur3iEKwl^dino_^@X3D({c!o6cfJ`6-l|K-pBMymh&`RVrtAxYM@fSDG1|Ka^3 NEv_I|De~F>{{fMecnSaj literal 0 HcmV?d00001 diff --git a/docs/home/tutorial.md b/docs/home/tutorial.md index 83113f2e..ca76747e 100644 --- a/docs/home/tutorial.md +++ b/docs/home/tutorial.md @@ -1,43 +1,80 @@ -

- MC2 Center Data Models Explorer -

+# Using Data Models with the Data Curator App -

- - GitHub release (latest by date) - -

+This tutorial will guide you through using the templates provided in the Data Models section with the **Data Curator App (DCA)** to organize and submit your data. The Data Curator App simplifies data formatting and ensures that submissions meet metadata standards. -**Welcome!** πŸ‘‹ Explore metadata terms used by MC2 Center -project by key, value, or descriptions. +Access the Data Curator App here: [Data Curator App](https://dca.app.sagebionetworks.org/) -### How to Use -1. ↑ Use the search bar above for a specific term +## **Step 1: Select a Data Coordination Center (DCC)** +After launching the app, choose the relevant DCC from the dropdown menu. For example, select **DCA Demo**. -2. ← Use the left navigation to explore all existing terms by category +![Step 1: Select a DCC](../assets/dca-tutorial/select_dcc.png) ---- +## **Step 2: Choose a Project** +Select the project you want to work with, such as **FAIR Demo Data**. -### Next Steps +![Step 2: Select a Project](../assets/dca-tutorial/select_project.png) -To start contributing to your resources on the Cancer Complexity Knowledge -Portal (CCKP), please read [our CCKP docs]. ---- +## **Step 3: Select a Folder** +Choose the appropriate folder for your data. For example, select **A Biospecimen**. -### Found an error? +![Step 3: Select a Folder](../assets/dca-tutorial/select_folder.png) -We are always looking for ways to improve our data models. If there is -an issue with an existing term - or if you have a suggestion - [let us know]! +## **Step 4: Select a Template** +Choose a template that matches the type of data you're working with. The templates available in this app align with the templates provided in the Data Models section of this documentation. Download the selected template to your computer. -Or, if you would like to contribute to the project directly, read our -[contribution guidelines]. +![Step 4: Select a Template](../assets/dca-tutorial/select_template.png) -!!!important - Changing existing terminology may result in breaking changes downstream, - so not all suggestions may be considered unless they are well-justified. -[our CCKP docs]: https://help.cancercomplexity.synapse.org/doc/contributing-and-updating-data-in-the-portal -[contribution guidelines]: https://mc2-center.github.io/data-models/contributing/ -[let us know]: https://github.com/mc2-center/data-models/issues/new?assignees=aditigopalan&labels=bug&projects=&template=bug-report.md&title=%5Bbug%5D+ \ No newline at end of file +This will open a CSV file in a Google Sheet on your computer. You can save this to your device and use the template to add your metadata to it. + +![Step 4: Biospecimen Template](../assets/dca-tutorial/dca_demo_biospecimen_template.png) + + + +## **Step 5: Populate the Template with Your Data** +Open the downloaded CSV template and fill in your data. Use the descriptions and examples provided in the Data Models section to guide you. Below is an example of a completed **Dataset** template: + +| **Dataset Name** | **Dataset Alias** | **Dataset Description** | **Dataset Url** | **Dataset Assay** | **Dataset Species** | **Dataset Tumor Type** | **Dataset Tissue** | **Dataset File Formats** | **Dataset Grant Number** | **Dataset Pubmed Id** | **Dataset View** | **DatasetView_id** | +|-------------------------------------------|-------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------|------------------|---------------------|-------------------------|-------------------|---------------------------|--------------------------|------------------------|-----------------|---------------------------| +| RNA Sequencing of Lung Cancer Samples 2021 | GSE56789 | This dataset contains RNA sequencing data from 200 lung cancer samples... | [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789) | RNA Sequencing | Homo sapiens | Glioblastoma | Lung | CSV, PDF | CA209971 | Not applicable | Table | DatasetView_12345 | + +!!!important + Please note that to successfully upload this template, you will need to input the following for steps 1-4: + + 1. DCC = Cancer Complexity Knowledge Portal - Database + 2. *Your Project name* + 3. *Your folder name* + 4. (optional) Skip to validation + + + +## **Step 6: Upload and Validate Metadata** +Upload the completed CSV template back into the Data Curator App and proceed to validate your metadata. The app will check for errors and inconsistencies. + +![Step 6: Upload CSV](../assets/dca-tutorial/validate_submit_metadata.png) + +## **Benefits of Using the Data Curator App** +- **Ease of Use:** Templates are pre-structured, making it easy to input your data correctly. +- **Metadata Consistency:** The app validates your data to ensure compliance with predefined models and metadata standards. +- **Efficient Submission:** By using the templates and app, you reduce the risk of errors during submission to data portals like the [**Cancer Complexity Knowledge Portal**](https://www.cancercomplexity.synapse.org/). + +## **Next Steps** + +Now that you've learned how to use the Data Curator App with templates, explore other data models to match the specific type of data you're working with. Each template is designed to help you organize and submit structured metadata for various research elements. + +| **Data Model** | **When to Use This Template** | **Link** | +|---------------------------|---------------------------------------------------------------|------------------------------------------| +| Dataset Data Model | Use this to describe and organize datasets, including key details like study purpose, data type, and access links. | [Dataset Data Model](../model/dataset.md) | +| Dataset Sharing Plan | Use this to define your plan for sharing datasets, including permissions, licensing, and compliance with policies. | [Dataset Sharing Plan](../model/DataDSP.md) | +| Education Resource Model | Use this for metadata related to learning materials, training datasets, or educational tools shared with your research. | [Education Resource Data Model](../model/education.md) | +| File Data Model | Use this to catalog individual files within a dataset, including file format, processing level, and storage location. | [File Data Model](../model/file.md) | +| Grant Data Model | Use this to document funding sources and grants that support the research, including grant IDs and sponsors. | [Grant Data Model](../model/grant.md) | +| Person Data Model | Use this to capture details about individuals involved in the project, such as researchers, collaborators, or data submitters. | [Person Data Model](../model/person.md) | +| Publication Data Model | Use this to track publications related to the research, including journal articles, white papers, or reports. | [Publication Data Model](../model/publication.md) | +| Study Data Model | Use this to provide an overview of a research study, including objectives, design, and related datasets. | [Study Data Model](../model/study.md) | +| Tool Data Model | Use this to describe tools, software, or resources used for data collection, analysis, or visualization. | [Tool Data Model](../model/tool.md) | + +Explore these links to find the right template for your data and continue with your submissions. + diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index e9a73ca6..6b388e25 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -8,7 +8,7 @@ Dataset Assay,"The assay the dataset is representative of. Multiple values permi Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,"Homo sapiens" Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,"Glioblastoma" Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,"Lung" -Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,"""Dataset File Formats: AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" +Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,"""AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats, Data Use Codes",False,,,Study,,,"Table, Spreadsheet" Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,"CA209971" Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,False,,,,,list like,"31245678" diff --git a/modules/education/annotationProperty.csv b/modules/education/annotationProperty.csv index b3b130be..a69ff1fa 100644 --- a/modules/education/annotationProperty.csv +++ b/modules/education/annotationProperty.csv @@ -2,19 +2,19 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsO Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, Resource Title, Resource Link, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Grant Number, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",False,,,Grant View,,,"""Online Tutoring Platform""" Resource Title,Title of the item.,,,True,,,,OER,str,"""Introduction to Biology""" Resource Link,The URL or DOI that links to the item.,,,True,,,,OER,url,https://www.example.com/resource_page.html -Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,True,,,,OER,list like,Resource Topic: Metabolism +Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,True,,,,OER,list like,Metabolism Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,True,,,,OER,list like,Simulation -Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,True,,,,OER,list like,Resource Primary Format: Video -Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,True,,,,OER,list like,"""Resource Intended Use: Curriculum/Instruction""" -Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,True,,,,OER,list like,Resource Primary Audience: Teacher -Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,True,,,,OER,list like,Resource Educational Level: High School +Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,True,,,,OER,list like,Video +Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,True,,,,OER,list like,"""Curriculum/Instruction""" +Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,True,,,,OER,list like,Teacher +Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,True,,,,OER,list like,High School Resource Description,Abstract or summary of the item.,,,True,,,,OER,str,"""This comprehensive e-book introduces readers to the world of biology""" Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,True,,,,OER,list like,Smithsonian Institution -Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,True,,,,OER,list like::regex search [a-z]{2},Resource Language: en +Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,True,,,,OER,list like::regex search [a-z]{2},en Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,True,,,,OER,list like,"John Smith, Jane Doe, XYZ Corporation" -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,MC2/grant,list like,Resource Grant Number: CA217655 +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,MC2/grant,list like,CA217655 Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,False,,,,OER,list like,Cancer Research -Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,OER,list like,Resource License: Apache-2.0 +Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,OER,list like,Apache-2.0 Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,False,,,,OER,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,False,,,,OER,unique,Nan Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,False,,,,OER,list like,ResourceID_56789 diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index 10a7214b..968345e4 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -1,11 +1,11 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples File Description,Description of the file.,,,False,,,,,str,"""CSV file containing gene expression data for breast cancer""" -File Design,The overall design of the dataset or file.,,,False,,,,,str,File Design: CSV (Comma-separated values) +File Design,The overall design of the dataset or file.,,,False,,,,,str,CSV File Url,The url of where the file is stored.,,,True,,,,,url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,,File Assay: RNA Sequencing +File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,,RNA Sequencing File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,True,,,,HTAN,,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" -File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,File Species: Human -File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,File Tumor Type: Breast Carcinoma +File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,Human +File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,Breast Carcinoma File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Breast File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",False,,,Study,,,List View FileView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""FileView_123456""" diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index 3e0d5b4f..91ef888e 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -3,15 +3,15 @@ Grant Name,Name of the grant,,,True,,,,,,"""Research Grant for Cancer Genomics"" Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,True,,,,,regex search ^CA\d{6}$,DE-FG02-01ER45923 Grant Abstract,Abstract for the grant,,,True,,,,,,"""Your grant abstract.""" Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,True,,,,,,R37 -Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",False,,,,,,Grant View: Public +Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",False,,,,,,Public Grant Theme Name,Theme(s) associated with the grant. ,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,True,,,,,list like,"Interaction, Viral/Bacterial Oncogenesis" Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). ,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,True,,,,,list like,Brigham and Womens Hospital Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). ,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,True,,,,,list like,Stanford Grant Investigator,Investigator(s) associated witht the grant. ,,,True,,,,,list like,Dr. John Smith -Grant Consortium Name,Consortium(s) associated with the grant. ,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,,Grant Consortium Name: HTAN +Grant Consortium Name,Consortium(s) associated with the grant. ,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,,HTAN GrantView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""GV12345""" -Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,False,,,,,url,"Team: Project Management, Permission: Edit" -Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,False,,,,,url,"Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant" +Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,False,,,,,url, +Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,False,,,,,url, Grant Start Date,The start date of the grant YYYY-MM-DD format,,,True,,,,,date,01/01/2022 NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,True,,,,,url,https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521&icde=49775456&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC&pball= Duration of Funding,"Duration of the funding period, in years",,,False,,,,,int,3 years diff --git a/modules/person/annotationProperty.csv b/modules/person/annotationProperty.csv index dda27643..4f70a4c2 100644 --- a/modules/person/annotationProperty.csv +++ b/modules/person/annotationProperty.csv @@ -1,17 +1,17 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples Name,Name of the individual,,,True,,,,,,John Doe -Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,False,,,,,list like,"Alternative Names: Bob, Bobby, Robert" +Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,False,,,,,list like,"Bob, Bobby, Robert" Email,Email address of the individual,,,False,,,,,,johndoe@example.com Url,"URL, e.g., individual's home page address",,,False,,,,,,https://www.google.com Orcid Id,Unique identifier (ORCID ID) of the individual,,,False,,,,,regex search \d{4}\-\d{4}\-\d{4}\-\d{3}(\d|X),0000-0002-1825-0097 Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,,,False,,,,,unique,SP12345678 Last Known Institution,Last known institutional affiliation of the individual.,,,True,,,,,,Harvard University -Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,True,,,,,list like,Working Group Participation: Cell and Tissue Mechanics +Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,True,,,,,list like,Cell and Tissue Mechanics Chair Roles,"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.","Annual Meeting, None, Steering Committee, Working Group",,True,,,,,list like,Steering Committee -Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,True,,,,,,Consent For Portal Display: Yes -Portal Display,Display content in CCKP,"FALSE, TRUE",,True,,,,,,Portal Display: TRUE +Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,True,,,,,,Yes +Portal Display,Display content in CCKP,"FALSE, TRUE",,True,,,,,,TRUE Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",False,,,Grant View,,,Public Profile View -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,Person Grant Number: CA202177 +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA202177 Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,list like,PDMC Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"""23761710,23761712,23762511" Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"GSE12345" diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index 7dde7bfe..8b568b56 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -20,7 +20,7 @@ Tool Grant Number,"Grant number associated with the tool's development. Multiple Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,True,,,,biotoolsschema,url,https://www.example.com/ Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,"DNA Sequence" Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,CSV -Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,False,,,,biotoolsschema,list like,Tool Language: Python +Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,False,,,,biotoolsschema,list like,Python Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,biotoolsschema,list like,Apache-2.0 Tool Link Note,Comment about the link.,,,False,,,,biotoolsschema,,"""This tool cannot be accessed without a valid institutional login.""" Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,False,,,,biotoolsschema,list like,Social Media @@ -28,7 +28,7 @@ Tool Link Url,A link of some relevance to the software (URL).,,,False,,,,biotool Tool Name,Canonical tool name provided by the tool developer or service provider.,,,True,,,,biotoolsschema,unique,Adobe Photoshop Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,False,,,,biotoolsschema,list like,Linux Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,True,,,,biotoolsschema,list like,"DNA Barcoding" -Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,Gene ID (NCBI): NM_001282392.1 +Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,"Accession, Alignment,Biological Model ID" Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,"FASTQ" Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,False,,,,CWL,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,True,,,,CWL,,True From d2827dbe0d37c78ac4998dea7d537cb5cc80b20f Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Thu, 6 Feb 2025 11:09:43 -0600 Subject: [PATCH 007/106] formatting --- docs/model/DataDSP.md | 2 +- docs/model/dataset.md | 2 +- docs/model/education.md | 2 +- docs/model/person.md | 2 +- modules/dataset/template.csv | 2 +- modules/education/template.csv | 16 ++++++++-------- modules/file/template.csv | 8 ++++---- modules/grant/template.csv | 8 ++++---- modules/person/template.csv | 10 +++++----- modules/tool/template.csv | 4 ++-- 10 files changed, 28 insertions(+), 28 deletions(-) diff --git a/docs/model/DataDSP.md b/docs/model/DataDSP.md index 90db8da2..bc0cc184 100644 --- a/docs/model/DataDSP.md +++ b/docs/model/DataDSP.md @@ -1,4 +1,4 @@ -A **Dataset Sharing Plan (DataDSP)** is a structured framework used to document the sharing, storage, and usage details of datasets within MC2 Center-supported Synapse projects. These plans help ensure datasets are traceable, well-organized, and compliant with regulations regarding data sharing, accessibility, and ethical use. By defining attributes such as dataset names, assays, species, and sharing permissions, the model facilitates efficient data management and collaboration across research projects. +A **Dataset Sharing Plan (DataDSP)** is a structured framework used to document the sharing, storage, and usage details of datasets within MC2 Center-supported Synapse projects. These plans help ensure datasets are traceable, well-organized, and compliant with regulations regarding data sharing, accessibility, and ethical use. By defining attributes such as dataset names, assays, species, and sharing permissions, the model facilitates efficient data management and collaboration across research projects. This page outlines the key attributes required to create a DataDSP, guiding users on how to structure and share datasets while adhering to best practices. It also demonstrates how attributes like planned upload dates, file formats, and grant numbers are used to ensure compliance with both internal and external data-sharing policies. diff --git a/docs/model/dataset.md b/docs/model/dataset.md index 12c1a0e2..65705fd9 100644 --- a/docs/model/dataset.md +++ b/docs/model/dataset.md @@ -1,4 +1,4 @@ -A **Dataset** refers to a structured collection of data that is organized for analysis, sharing, and research. Datasets can include various types of information such as demographic statistics, experimental results, or survey responses. In MC2 Center-supported projects, dataset entries help ensure data is properly categorized, easily retrievable, and compliant with sharing and storage requirements. +A **Dataset** refers to a structured collection of data that is organized for analysis, sharing, and research. Datasets can include various types of information such as demographic statistics, experimental results, or survey responses. In MC2 Center-supported projects, dataset entries help ensure data is properly categorized, easily retrievable, and compliant with sharing and storage requirements. This model outlines key attributes that describe and manage datasets, including metadata about the data type, format, number of samples, and related grant information. By maintaining these attributes, datasets can be efficiently tracked and referenced within data repositories. diff --git a/docs/model/education.md b/docs/model/education.md index f4c1410a..e001c9ea 100644 --- a/docs/model/education.md +++ b/docs/model/education.md @@ -1,4 +1,4 @@ -An **Educational Resource** refers to any material designed to support learning and instruction. These resources can take many forms, such as videos, textbooks, simulations, or interactive activities, and are intended to be used by various audiences, including students, teachers, researchers, and lifelong learners. In MC2 Center-supported projects, these entries document key information about educational resources to ensure they are accessible, properly categorized, and easy to reference. +An **Educational Resource** refers to any material designed to support learning and instruction. These resources can take many forms, such as videos, textbooks, simulations, or interactive activities, and are intended to be used by various audiences, including students, teachers, researchers, and lifelong learners. In MC2 Center-supported projects, these entries document key information about educational resources to ensure they are accessible, properly categorized, and easy to reference. This model defines attributes to describe each resource, including its title, topic, educational level, and usage, to facilitate discovery, sharing, and reuse within educational systems. diff --git a/docs/model/person.md b/docs/model/person.md index 8ac1fded..b757c96f 100644 --- a/docs/model/person.md +++ b/docs/model/person.md @@ -1,6 +1,6 @@ A **Person** entry provides detailed information about individuals involved in research projects, including their affiliations, roles, and contributions. Accurate person records are essential for tracking collaborations, grant participation, working group involvement, and expertise within scientific initiatives. -This section outlines how to create a valid person entry, ensuring that all necessary details are captured to support identification, categorization, and data integration within MC2 Center-supported projects. +This section outlines how to create a valid person entry, ensuring that all necessary details are captured to support identification, categorization, and data integration within MC2 Center-supported projects. ### **Why You Should Contribute Person Entries** Contributing person entries enhances collaboration by providing clear visibility into expertise, roles, and project involvement within research teams. It helps connect researchers and contributors across projects, facilitates networking opportunities, and allows stakeholders to easily identify key personnel for collaboration or consultation. Maintaining up-to-date profiles also supports transparency and improves recognition of contributions to research initiatives. diff --git a/modules/dataset/template.csv b/modules/dataset/template.csv index 7223c85e..db18572d 100644 --- a/modules/dataset/template.csv +++ b/modules/dataset/template.csv @@ -8,7 +8,7 @@ Dataset Url,The url of where the dataset is stored.,True,url,https://www.ncbi.nl [Dataset Species](../valid_values/dataset.md#attribute-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Homo sapiens [Dataset Tumor Type](../valid_values/dataset.md#attribute-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Glioblastoma [Dataset Tissue](../valid_values/dataset.md#attribute-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Lung -[Dataset File Formats](../valid_values/dataset.md#attribute-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,"""Dataset File Formats: AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" +[Dataset File Formats](../valid_values/dataset.md#attribute-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,"""AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" Dataset View,The denormalized manifest for dataset submission.,False,_None_,"Table, Spreadsheet" [Dataset Grant Number](../valid_values/dataset.md#attribute-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",False,list like,31245678 diff --git a/modules/education/template.csv b/modules/education/template.csv index 7486f140..5bf40bee 100644 --- a/modules/education/template.csv +++ b/modules/education/template.csv @@ -2,19 +2,19 @@ Attribute,Description,Required,Validation Rules,Examples Educational Resource,Manifest for describing educational resources.,False,_None_,"""Online Tutoring Platform""" Resource Title,Title of the item.,True,str,"""Introduction to Biology""" Resource Link,The URL or DOI that links to the item.,True,url,https://www.example.com/resource_page.html -[Resource Topic](../valid_values/education.md#attribute-resource-topic),"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.",True,list like,Resource Topic: Metabolism +[Resource Topic](../valid_values/education.md#attribute-resource-topic),"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.",True,list like,Metabolism [Resource Activity Type](../valid_values/education.md#attribute-resource-activity-type),The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,True,list like,Simulation -[Resource Primary Format](../valid_values/education.md#attribute-resource-primary-format),"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.",True,list like,Resource Primary Format: Video -[Resource Intended Use](../valid_values/education.md#attribute-resource-intended-use),The purpose of the material for education. Multiple values should be provided as a comma separated list.,True,list like,"""Resource Intended Use: Curriculum/Instruction""" -[Resource Primary Audience](../valid_values/education.md#attribute-resource-primary-audience),The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,True,list like,Resource Primary Audience: Teacher -[Resource Educational Level](../valid_values/education.md#attribute-resource-educational-level),"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.",True,list like,Resource Educational Level: High School +[Resource Primary Format](../valid_values/education.md#attribute-resource-primary-format),"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.",True,list like,Video +[Resource Intended Use](../valid_values/education.md#attribute-resource-intended-use),The purpose of the material for education. Multiple values should be provided as a comma separated list.,True,list like,"""Curriculum/Instruction""" +[Resource Primary Audience](../valid_values/education.md#attribute-resource-primary-audience),The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,True,list like,Teacher +[Resource Educational Level](../valid_values/education.md#attribute-resource-educational-level),"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.",True,list like,High School Resource Description,Abstract or summary of the item.,True,str,"""This comprehensive e-book introduces readers to the world of biology""" Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,True,list like,Smithsonian Institution -[Resource Language](../valid_values/education.md#attribute-resource-language),Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,True,list like::regex search [a-z]{2},Resource Language: en +[Resource Language](../valid_values/education.md#attribute-resource-language),Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,True,list like::regex search [a-z]{2},en Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,True,list like,"John Smith, Jane Doe, XYZ Corporation" -[Resource Grant Number](../valid_values/education.md#attribute-resource-grant-number),"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.",True,list like,Resource Grant Number: CA217655 +[Resource Grant Number](../valid_values/education.md#attribute-resource-grant-number),"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.",True,list like,CA217655 Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",False,list like,Cancer Research -[Resource License](../valid_values/education.md#attribute-resource-license),"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.",False,list like,Resource License: Apache-2.0 +[Resource License](../valid_values/education.md#attribute-resource-license),"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.",False,list like,Apache-2.0 Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",False,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",False,unique,Nan Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",False,list like,ResourceID_56789 diff --git a/modules/file/template.csv b/modules/file/template.csv index 5c26b7d0..2da18949 100644 --- a/modules/file/template.csv +++ b/modules/file/template.csv @@ -1,11 +1,11 @@ Attribute,Description,Required,Validation Rules,Examples File Description,Description of the file.,False,str,"""CSV file containing gene expression data for breast cancer""" -File Design,The overall design of the dataset or file.,False,str,File Design: CSV (Comma-separated values) +File Design,The overall design of the dataset or file.,False,str,CSV File Url,The url of where the file is stored.,True,url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) -[File Assay](../valid_values/file.md#attribute-file-assay),The assay the file is representative of.,True,_None_,File Assay: RNA Sequencing +[File Assay](../valid_values/file.md#attribute-file-assay),The assay the file is representative of.,True,_None_,RNA Sequencing [File Level](../valid_values/file.md#attribute-file-level),The processing level the file can be mapped to. ,True,_None_,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" -[File Species](../valid_values/file.md#attribute-file-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,File Species: Human -[File Tumor Type](../valid_values/file.md#attribute-file-tumor-type),"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.",False,list like,File Tumor Type: Breast Carcinoma +[File Species](../valid_values/file.md#attribute-file-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Human +[File Tumor Type](../valid_values/file.md#attribute-file-tumor-type),"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.",False,list like,Breast Carcinoma [File Tissue](../valid_values/file.md#attribute-file-tissue),"Tissue type(s) associated with the file. Multiple values permitted, comma separated.",False,list like,Breast File View,The denormalized manifest for file submission.,False,_None_,List View FileView_id,A unique primary key that enables record updates using schematic.,True,unique,"""FileView_123456""" diff --git a/modules/grant/template.csv b/modules/grant/template.csv index 81f79009..b4b3f66c 100644 --- a/modules/grant/template.csv +++ b/modules/grant/template.csv @@ -3,15 +3,15 @@ Grant Name,Name of the grant,True,_None_,"""Research Grant for Cancer Genomics"" Grant Number,"Number of the grant (i.e. ""CA------"" format)",True,regex search ^CA\\d{6}$,DE-FG02-01ER45923 Grant Abstract,Abstract for the grant,True,_None_,"""Your grant abstract.""" [Grant Type](../valid_values/grant.md#attribute-grant-type),Type of grant,True,_None_,R37 -Grant View,The denormalized manifest for grant submission.,False,_None_,Grant View: Public +Grant View,The denormalized manifest for grant submission.,False,_None_,Public [Grant Theme Name](../valid_values/grant.md#attribute-grant-theme-name),Theme(s) associated with the grant. ,True,list like,"Interaction, Viral/Bacterial Oncogenesis" [Grant Institution Name](../valid_values/grant.md#attribute-grant-institution-name),The full name of the institution(s) associated with the grant. (e.g. Harvard University). ,True,list like,Brigham and Womens Hospital [Grant Institution Alias](../valid_values/grant.md#attribute-grant-institution-alias),The alias of the institution(s) associated with the grant (e.g. UCSD). ,True,list like,Stanford Grant Investigator,Investigator(s) associated witht the grant. ,True,list like,Dr. John Smith -[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. ,True,_None_,Grant Consortium Name: HTAN +[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. ,True,_None_,HTAN GrantView_id,A unique primary key that enables record updates using schematic.,True,unique,"""GV12345""" -Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",False,url,"Team: Project Management, Permission: Edit" -Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",False,url,"Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant" +Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",False,url, +Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",False,url, Grant Start Date,The start date of the grant YYYY-MM-DD format,True,date,01/01/2022 NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,True,url,https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521&icde=49775456&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC&pball= Duration of Funding,"Duration of the funding period, in years",False,int,3 years diff --git a/modules/person/template.csv b/modules/person/template.csv index 6ce5eb5c..1b28ba68 100644 --- a/modules/person/template.csv +++ b/modules/person/template.csv @@ -1,17 +1,17 @@ Attribute,Description,Required,Validation Rules,Examples Name,Name of the individual,True,_None_,John Doe -Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",False,list like,"Alternative Names: Bob, Bobby, Robert" +Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",False,list like,"Bob, Bobby, Robert" Email,Email address of the individual,False,_None_,johndoe@example.com Url,"URL, e.g., individual's home page address",False,_None_,https://www.google.com Orcid Id,Unique identifier (ORCID ID) of the individual,False,regex search \\d{4}\\-\\d{4}\\-\\d{4}\\-\\d{3}(\\d|X),0000-0002-1825-0097 Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,False,unique,SP12345678 Last Known Institution,Last known institutional affiliation of the individual.,True,_None_,Harvard University -[Working Group Participation](../valid_values/person.md#attribute-working-group-participation),"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.",True,list like,Working Group Participation: Cell and Tissue Mechanics +[Working Group Participation](../valid_values/person.md#attribute-working-group-participation),"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.",True,list like,Cell and Tissue Mechanics [Chair Roles](../valid_values/person.md#attribute-chair-roles),"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.",True,list like,Steering Committee -[Consent For Portal Display](../valid_values/person.md#attribute-consent-for-portal-display),Consent from individual to display Person information in the CCKP,True,_None_,Consent For Portal Display: Yes -[Portal Display](../valid_values/person.md#attribute-portal-display),Display content in CCKP,True,_None_,Portal Display: TRUE +[Consent For Portal Display](../valid_values/person.md#attribute-consent-for-portal-display),Consent from individual to display Person information in the CCKP,True,_None_,Yes +[Portal Display](../valid_values/person.md#attribute-portal-display),Display content in CCKP,True,_None_,TRUE Person View,The denormalized manifest for person submission.,False,_None_,Public Profile View -[Person Grant Number](../valid_values/person.md#attribute-person-grant-number),"Grant number(s) associated with the person. Multiple values permitted, comma separated.",True,list like,Person Grant Number: CA202177 +[Person Grant Number](../valid_values/person.md#attribute-person-grant-number),"Grant number(s) associated with the person. Multiple values permitted, comma separated.",True,list like,CA202177 [Person Consortium Name](../valid_values/person.md#attribute-person-consortium-name),"Consortium(s) associated with the person. Multiple values permitted, comma separated.",True,list like,PDMC Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",False,list like,"""23761710,23761712,23762511" Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",False,list like,GSE12345 diff --git a/modules/tool/template.csv b/modules/tool/template.csv index 8c1d92e2..85ffb7e6 100644 --- a/modules/tool/template.csv +++ b/modules/tool/template.csv @@ -20,7 +20,7 @@ Tool Function Note,"Concise comment about this function, if not apparent from th Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",True,url,https://www.example.com/ [Tool Input Data](../valid_values/tool.md#attribute-tool-input-data),"Type of primary input data. Multiple values permitted, comma separated.",True,list like,DNA Sequence [Tool Input Format](../valid_values/tool.md#attribute-tool-input-format),"Allowed format(s) of the input data. Multiple values permitted, comma separated.",True,list like,CSV -[Tool Language](../valid_values/tool.md#attribute-tool-language),"Name of programming language the software source code was written in. Multiple values permitted, comma separated.",False,list like,Tool Language: Python +[Tool Language](../valid_values/tool.md#attribute-tool-language),"Name of programming language the software source code was written in. Multiple values permitted, comma separated.",False,list like,Python [Tool License](../valid_values/tool.md#attribute-tool-license),"Software or data usage license. Multiple values permitted, comma separated.",False,list like,Apache-2.0 Tool Link Note,Comment about the link.,False,_None_,"""This tool cannot be accessed without a valid institutional login.""" [Tool Link Type](../valid_values/tool.md#attribute-tool-link-type),"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.",False,list like,Social Media @@ -28,7 +28,7 @@ Tool Link Url,A link of some relevance to the software (URL).,False,_None_,https Tool Name,Canonical tool name provided by the tool developer or service provider.,True,unique,Adobe Photoshop [Tool Operating System](../valid_values/tool.md#attribute-tool-operating-system),"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.",False,list like,Linux [Tool Operation](../valid_values/tool.md#attribute-tool-operation),"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.",True,list like,DNA Barcoding -[Tool Output Data](../valid_values/tool.md#attribute-tool-output-data),"Type of primary output data. Multiple values permitted, comma separated.",True,list like,Gene ID (NCBI): NM_001282392.1 +[Tool Output Data](../valid_values/tool.md#attribute-tool-output-data),"Type of primary output data. Multiple values permitted, comma separated.",True,list like,"Accession, Alignment,Biological Model ID" [Tool Output Format](../valid_values/tool.md#attribute-tool-output-format),"Allowed format(s) of the output data. Multiple values permitted, comma separated.",True,list like,FASTQ Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",False,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." [Tool Package Dependencies Present](../valid_values/tool.md#attribute-tool-package-dependencies-present),Indicates whether the required package dependencies for tool are present.,True,_None_,True From a6c0157428e9eb03509ff90d07810a9ed73496ae Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Thu, 20 Feb 2025 23:37:30 -0800 Subject: [PATCH 008/106] update the pipeline with examples separated --- docs/home/how-to-use-multiple-templates.md | 80 +++++++++++++++++++ modules/dataset/annotationProperty.csv | 31 ++++---- modules/dataset/exampleColumn.csv | 15 ++++ modules/dataset/template.csv | 1 + modules/education/annotationProperty.csv | 51 +++++++------ modules/education/exampleColumn.csv | 25 ++++++ modules/education/template.csv | 3 +- modules/file/annotationProperty.csv | 39 +++++----- modules/file/exampleColumn.csv | 20 +++++ modules/file/template.csv | 3 +- modules/grant/annotationProperty.csv | 36 ++++----- modules/grant/exampleColumn.csv | 18 +++++ modules/grant/template.csv | 34 ++++----- modules/person/annotationProperty.csv | 40 +++++----- modules/person/exampleColumn.csv | 20 +++++ modules/person/template.csv | 2 +- modules/publication/annotationProperty.csv | 36 ++++----- modules/publication/exampleColumn.csv | 18 +++++ modules/publication/template.csv | 8 +- modules/sharingPlans/annotationProperty.csv | 47 ++++++------ modules/sharingPlans/exampleColumn.csv | 24 ++++++ modules/sharingPlans/template.csv | 7 +- modules/study/annotationProperty.csv | 29 +++---- modules/study/exampleColumn.csv | 15 ++++ modules/study/template.csv | 11 +-- modules/tool/annotationProperty.csv | 85 +++++++++++---------- modules/tool/exampleColumn.csv | 43 +++++++++++ modules/tool/template.csv | 13 ++-- scripts/hooks.py | 21 ++++- 29 files changed, 540 insertions(+), 235 deletions(-) create mode 100644 docs/home/how-to-use-multiple-templates.md create mode 100644 modules/dataset/exampleColumn.csv create mode 100644 modules/education/exampleColumn.csv create mode 100644 modules/file/exampleColumn.csv create mode 100644 modules/grant/exampleColumn.csv create mode 100644 modules/person/exampleColumn.csv create mode 100644 modules/publication/exampleColumn.csv create mode 100644 modules/sharingPlans/exampleColumn.csv create mode 100644 modules/study/exampleColumn.csv create mode 100644 modules/tool/exampleColumn.csv diff --git a/docs/home/how-to-use-multiple-templates.md b/docs/home/how-to-use-multiple-templates.md new file mode 100644 index 00000000..5ccbb68d --- /dev/null +++ b/docs/home/how-to-use-multiple-templates.md @@ -0,0 +1,80 @@ +# How to Use Multiple Templates + +This tutorial will guide you through using the templates provided in the Data Models section with the **Data Curator App (DCA)** to organize and submit your data. The Data Curator App simplifies data formatting and ensures that submissions meet metadata standards. + +Access the Data Curator App here: [Data Curator App](https://dca.app.sagebionetworks.org/) + + +## **Step 1: Select a Data Coordination Center (DCC)** +After launching the app, choose the relevant DCC from the dropdown menu. For example, select **DCA Demo**. + +![Step 1: Select a DCC](../assets/dca-tutorial/select_dcc.png) + +## **Step 2: Choose a Project** +Select the project you want to work with, such as **FAIR Demo Data**. + +![Step 2: Select a Project](../assets/dca-tutorial/select_project.png) + + +## **Step 3: Select a Folder** +Choose the appropriate folder for your data. For example, select **A Biospecimen**. + +![Step 3: Select a Folder](../assets/dca-tutorial/select_folder.png) + +## **Step 4: Select a Template** +Choose a template that matches the type of data you're working with. The templates available in this app align with the templates provided in the Data Models section of this documentation. Download the selected template to your computer. + +![Step 4: Select a Template](../assets/dca-tutorial/select_template.png) + + +This will open a CSV file in a Google Sheet on your computer. You can save this to your device and use the template to add your metadata to it. + +![Step 4: Biospecimen Template](../assets/dca-tutorial/dca_demo_biospecimen_template.png) + + + +## **Step 5: Populate the Template with Your Data** +Open the downloaded CSV template and fill in your data. Use the descriptions and examples provided in the Data Models section to guide you. Below is an example of a completed **Dataset** template: + +| **Dataset Name** | **Dataset Alias** | **Dataset Description** | **Dataset Url** | **Dataset Assay** | **Dataset Species** | **Dataset Tumor Type** | **Dataset Tissue** | **Dataset File Formats** | **Dataset Grant Number** | **Dataset Pubmed Id** | **Dataset View** | **DatasetView_id** | +|-------------------------------------------|-------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------|------------------|---------------------|-------------------------|-------------------|---------------------------|--------------------------|------------------------|-----------------|---------------------------| +| RNA Sequencing of Lung Cancer Samples 2021 | GSE56789 | This dataset contains RNA sequencing data from 200 lung cancer samples... | [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789) | RNA Sequencing | Homo sapiens | Glioblastoma | Lung | CSV, PDF | CA209971 | Not applicable | Table | DatasetView_12345 | + +!!!important + Please note that to successfully upload this template, you will need to input the following for steps 1-4: + + 1. DCC = Cancer Complexity Knowledge Portal - Database + 2. *Your Project name* + 3. *Your folder name* + 4. (optional) Skip to validation + + + +## **Step 6: Upload and Validate Metadata** +Upload the completed CSV template back into the Data Curator App and proceed to validate your metadata. The app will check for errors and inconsistencies. + +![Step 6: Upload CSV](../assets/dca-tutorial/validate_submit_metadata.png) + +## **Benefits of Using the Data Curator App** +- **Ease of Use:** Templates are pre-structured, making it easy to input your data correctly. +- **Metadata Consistency:** The app validates your data to ensure compliance with predefined models and metadata standards. +- **Efficient Submission:** By using the templates and app, you reduce the risk of errors during submission to data portals like the [**Cancer Complexity Knowledge Portal**](https://www.cancercomplexity.synapse.org/). + +## **Next Steps** + +Now that you've learned how to use the Data Curator App with templates, explore other data models to match the specific type of data you're working with. Each template is designed to help you organize and submit structured metadata for various research elements. + +| **Data Model** | **When to Use This Template** | **Link** | +|---------------------------|---------------------------------------------------------------|------------------------------------------| +| Dataset Data Model | Use this to describe and organize datasets, including key details like study purpose, data type, and access links. | [Dataset Data Model](../model/dataset.md) | +| Dataset Sharing Plan | Use this to define your plan for sharing datasets, including permissions, licensing, and compliance with policies. | [Dataset Sharing Plan](../model/DataDSP.md) | +| Education Resource Model | Use this for metadata related to learning materials, training datasets, or educational tools shared with your research. | [Education Resource Data Model](../model/education.md) | +| File Data Model | Use this to catalog individual files within a dataset, including file format, processing level, and storage location. | [File Data Model](../model/file.md) | +| Grant Data Model | Use this to document funding sources and grants that support the research, including grant IDs and sponsors. | [Grant Data Model](../model/grant.md) | +| Person Data Model | Use this to capture details about individuals involved in the project, such as researchers, collaborators, or data submitters. | [Person Data Model](../model/person.md) | +| Publication Data Model | Use this to track publications related to the research, including journal articles, white papers, or reports. | [Publication Data Model](../model/publication.md) | +| Study Data Model | Use this to provide an overview of a research study, including objectives, design, and related datasets. | [Study Data Model](../model/study.md) | +| Tool Data Model | Use this to describe tools, software, or resources used for data collection, analysis, or visualization. | [Tool Data Model](../model/tool.md) | + +Explore these links to find the right template for your data and continue with your submissions. + diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index 6b388e25..94138aa5 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -1,15 +1,16 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Dataset Name,Name of the dataset,,,True,,,,,,"RNA Sequencing of Lung Cancer Samples 2021" -Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,True,,,,,unique,"GSE56789" -Dataset Description,Description of the dataset.,,,False,,,,,,"This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages." -Dataset Design,The overall design of the dataset.,,,False,,,,,,"'Cross-sectional' to compare gene expression in healthy vs. tumor tissues, or 'Time-series' to observe changes during treatment." -Dataset Url,The url of where the dataset is stored.,,,True,,,,,url,"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789" -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,"RNA Sequencing" -Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,"Homo sapiens" -Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,"Glioblastoma" -Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,"Lung" -Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,"""AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" -Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats, Data Use Codes",False,,,Study,,,"Table, Spreadsheet" -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,"CA209971" -Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,False,,,,,list like,"31245678" -DatasetView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"DatasetView_67890" +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Dataset Name,Name of the dataset,,,TRUE,,,,, +Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique +Dataset Description,Description of the dataset.,,,FALSE,,,,, +Dataset Design,The overall design of the dataset.,,,FALSE,,,,, +Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url +Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like +Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like +Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file diff --git a/modules/dataset/exampleColumn.csv b/modules/dataset/exampleColumn.csv new file mode 100644 index 00000000..66ff0222 --- /dev/null +++ b/modules/dataset/exampleColumn.csv @@ -0,0 +1,15 @@ +Attribute,Example +Dataset Name,"RNA Sequencing of Lung Cancer Samples 2021" +Dataset Alias,"GSE56789" +Dataset Description,"This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages." +Dataset Design,"'Cross-sectional' to compare gene expression in healthy vs. tumor tissues, or 'Time-series' to observe changes during treatment." +Dataset Url,"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789" +Dataset Assay,"RNA Sequencing" +Dataset Species,"Homo sapiens" +Dataset Tumor Type,"Glioblastoma" +Dataset Tissue,"Lung" +Dataset File Formats,"""AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" +Dataset View,"Table, Spreadsheet" +Dataset Grant Number,"CA209971" +Dataset Pubmed Id,"31245678" +DatasetView_id,"DatasetView_67890" \ No newline at end of file diff --git a/modules/dataset/template.csv b/modules/dataset/template.csv index db18572d..0742b958 100644 --- a/modules/dataset/template.csv +++ b/modules/dataset/template.csv @@ -4,6 +4,7 @@ Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier s Dataset Description,Description of the dataset.,False,_None_,"This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages." Dataset Design,The overall design of the dataset.,False,_None_,"'Cross-sectional' to compare gene expression in healthy vs. tumor tissues, or 'Time-series' to observe changes during treatment." Dataset Url,The url of where the dataset is stored.,True,url,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789 +Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,True,url, [Dataset Assay](../valid_values/dataset.md#attribute-dataset-assay),"The assay the dataset is representative of. Multiple values permitted, comma separated.",True,list like,RNA Sequencing [Dataset Species](../valid_values/dataset.md#attribute-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Homo sapiens [Dataset Tumor Type](../valid_values/dataset.md#attribute-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Glioblastoma diff --git a/modules/education/annotationProperty.csv b/modules/education/annotationProperty.csv index a69ff1fa..3934f7b5 100644 --- a/modules/education/annotationProperty.csv +++ b/modules/education/annotationProperty.csv @@ -1,25 +1,26 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, Resource Title, Resource Link, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Grant Number, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",False,,,Grant View,,,"""Online Tutoring Platform""" -Resource Title,Title of the item.,,,True,,,,OER,str,"""Introduction to Biology""" -Resource Link,The URL or DOI that links to the item.,,,True,,,,OER,url,https://www.example.com/resource_page.html -Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,True,,,,OER,list like,Metabolism -Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,True,,,,OER,list like,Simulation -Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,True,,,,OER,list like,Video -Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,True,,,,OER,list like,"""Curriculum/Instruction""" -Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,True,,,,OER,list like,Teacher -Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,True,,,,OER,list like,High School -Resource Description,Abstract or summary of the item.,,,True,,,,OER,str,"""This comprehensive e-book introduces readers to the world of biology""" -Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,True,,,,OER,list like,Smithsonian Institution -Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,True,,,,OER,list like::regex search [a-z]{2},en -Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,True,,,,OER,list like,"John Smith, Jane Doe, XYZ Corporation" -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,MC2/grant,list like,CA217655 -Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,False,,,,OER,list like,Cancer Research -Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,OER,list like,Apache-2.0 -Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,False,,,,OER,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. -Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,False,,,,OER,unique,Nan -Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,False,,,,OER,list like,ResourceID_56789 -Resource Media Accessibility,"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.","Alternative Text, Audio Description, Braille, Captions, ChemML, Described Math, Display Transformability, Haptic, High Contrast, Large Print, Latex, Long Description, MathML, Nemeth Braille, Sign Language, Structural Navigation, Tactile Graphics, Text Transcript",,False,,,,OER,list like,"The educational video on the website provides 'Captions' for viewers with hearing impairments, making it an excellent example of 'Resource Media Accessibility'." -Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,False,,,,OER,list like,"An example for the attribute 'Resource Access Hazard' could be a website for a video game which includes flashing images and intense sequences of motion. The site also uses loud sounds and high intensity simulations which some users can find distressing or harmful, particularly if they have conditions such as epilepsy or severe motion sickness. Therefore, the website has a potential ""Resource Access Hazard.""" -Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,False,,,,MC2/dataset,list like,Nan -Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,False,,,,MC2/tool,list like,https://www.khanacademy.org/ -EducationalResource_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,ER_4567 +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, ToolView Key, Resource Title, Resource Link, Resource Doi, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",FALSE,,,Grant View,, +Resource Title,Title of the item.,,,TRUE,,,,OER,str +Resource Link,The URL that links to the item.,,,TRUE,,,,OER,url +Resource Doi,The Digital Object Identifier (DOI) associated with the educational resource.,,,TRUE,,,,MC2,url +Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,TRUE,,,,OER,list like +Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,TRUE,,,,OER,list like +Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,TRUE,,,,OER,list like +Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,TRUE,,,,OER,list like +Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,TRUE,,,,OER,list like +Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,TRUE,,,,OER,list like +Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str +Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like +Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like::regex search [a-z]{2} +Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like +Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like +Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like +Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str +Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,FALSE,,,,OER,unique +Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,list like +Resource Media Accessibility,"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.","Alternative Text, Audio Description, Braille, Captions, ChemML, Described Math, Display Transformability, Haptic, High Contrast, Large Print, Latex, Long Description, MathML, Nemeth Braille, Sign Language, Structural Navigation, Tactile Graphics, Text Transcript",,FALSE,,,,OER,list like +Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,FALSE,,,,OER,list like +Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/dataset,list like +Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/tool,list like +EducationalResource_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file diff --git a/modules/education/exampleColumn.csv b/modules/education/exampleColumn.csv new file mode 100644 index 00000000..9f10ef99 --- /dev/null +++ b/modules/education/exampleColumn.csv @@ -0,0 +1,25 @@ +Attribute,Example +Educational Resource,"""Online Tutoring Platform""" +Resource Title,"""Introduction to Biology""" +Resource Link,https://www.example.com/resource_page.html +Resource Topic,Metabolism +Resource Activity Type,Simulation +Resource Primary Format,Video +Resource Intended Use,"""Curriculum/Instruction""" +Resource Primary Audience,Teacher +Resource Educational Level,High School +Resource Description,"""This comprehensive e-book introduces readers to the world of biology""" +Resource Origin Institution,Smithsonian Institution +Resource Language,en +Resource Contributors,"John Smith, Jane Doe, XYZ Corporation" +Resource Grant Number,CA217655 +Resource Secondary Topic,Cancer Research +Resource License,Apache-2.0 +Resource Use Requirements,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. +Resource Alias,Nan +Resource Internal Identifier,ResourceID_56789 +Resource Media Accessibility,"The educational video on the website provides 'Captions' for viewers with hearing impairments, making it an excellent example of 'Resource Media Accessibility'." +Resource Access Hazard,"An example for the attribute 'Resource Access Hazard' could be a website for a video game which includes flashing images and intense sequences of motion. The site also uses loud sounds and high intensity simulations which some users can find distressing or harmful, particularly if they have conditions such as epilepsy or severe motion sickness. Therefore, the website has a potential ""Resource Access Hazard.""" +Resource Dataset Alias,Nan +Resource Tool Link,https://www.khanacademy.org/ +EducationalResource_id,ER_4567 diff --git a/modules/education/template.csv b/modules/education/template.csv index 5bf40bee..388ae79f 100644 --- a/modules/education/template.csv +++ b/modules/education/template.csv @@ -1,7 +1,8 @@ Attribute,Description,Required,Validation Rules,Examples Educational Resource,Manifest for describing educational resources.,False,_None_,"""Online Tutoring Platform""" Resource Title,Title of the item.,True,str,"""Introduction to Biology""" -Resource Link,The URL or DOI that links to the item.,True,url,https://www.example.com/resource_page.html +Resource Link,The URL that links to the item.,True,url,https://www.example.com/resource_page.html +Resource Doi,The Digital Object Identifier (DOI) associated with the educational resource.,True,url, [Resource Topic](../valid_values/education.md#attribute-resource-topic),"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.",True,list like,Metabolism [Resource Activity Type](../valid_values/education.md#attribute-resource-activity-type),The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,True,list like,Simulation [Resource Primary Format](../valid_values/education.md#attribute-resource-primary-format),"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.",True,list like,Video diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index 968345e4..1b687052 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -1,19 +1,20 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -File Description,Description of the file.,,,False,,,,,str,"""CSV file containing gene expression data for breast cancer""" -File Design,The overall design of the dataset or file.,,,False,,,,,str,CSV -File Url,The url of where the file is stored.,,,True,,,,,url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,,RNA Sequencing -File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,True,,,,HTAN,,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" -File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,Human -File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,Breast Carcinoma -File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Breast -File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",False,,,Study,,,List View -FileView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""FileView_123456""" -File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,False,,,,,str, -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",,,False,,,,,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." -File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,False,,,,,int,10-9876543210-12 -File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,False,,,,,str,Seconds -File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,False,,,,,num,"""2 hours 45 minutes""" -File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,False,,,,,num,"""120 minutes""" -File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,True,,,,,,CSV -File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,True,,,,,unique,"""Breast_Cancer_Gene_Expression.csv""" +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +File Description,Description of the file.,,,FALSE,,,,,str +File Design,The overall design of the dataset or file.,,,FALSE,,,,,str +File Url,The url of where the file is stored.,,,TRUE,,,,,url +File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, +File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, +File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like +File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like +File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, +FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str +File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str +File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int +File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str +File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num +File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num +File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, +File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique +File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like \ No newline at end of file diff --git a/modules/file/exampleColumn.csv b/modules/file/exampleColumn.csv new file mode 100644 index 00000000..580fc710 --- /dev/null +++ b/modules/file/exampleColumn.csv @@ -0,0 +1,20 @@ +Attribute,Example +File Description,"""CSV file containing gene expression data for breast cancer""" +File Design,CSV +File Url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) +File Assay,RNA Sequencing +File Level,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" +File Species,Human +File Tumor Type,Breast Carcinoma +File Tissue,Breast +File View,List View +FileView_id,"""FileView_123456""" +File Longitudinal Group, +File Longitudinal Event Type,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." +File Longitudinal Sequence Identifier,10-9876543210-12 +File Longitudinal Time Elapsed Unit,Seconds +File Longitudinal Sequential Time Elapsed,"""2 hours 45 minutes""" +File Longitudinal Total Time Elapsed,"""120 minutes""" +File Format,CSV +File Alias,"""Breast_Cancer_Gene_Expression.csv""" +File Anatomic Site,"Brain stem, Cervix uteri" \ No newline at end of file diff --git a/modules/file/template.csv b/modules/file/template.csv index 2da18949..9daa363c 100644 --- a/modules/file/template.csv +++ b/modules/file/template.csv @@ -10,10 +10,11 @@ File Url,The url of where the file is stored.,True,url,[https://www.example.com/ File View,The denormalized manifest for file submission.,False,_None_,List View FileView_id,A unique primary key that enables record updates using schematic.,True,unique,"""FileView_123456""" File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,False,str, -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",False,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." +[File Longitudinal Event Type](../valid_values/file.md#attribute-file-longitudinal-event-type),"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",False,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",False,int,10-9876543210-12 File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,False,str,Seconds File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,False,num,"""2 hours 45 minutes""" File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,False,num,"""120 minutes""" [File Format](../valid_values/file.md#attribute-file-format),The format of the file described by this entry.,True,_None_,CSV File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",True,unique,"""Breast_Cancer_Gene_Expression.csv""" +[File Anatomic Site](../valid_values/file.md#attribute-file-anatomic-site),The anatomic site associated with the data contained in this file.,True,list like,"Brain stem, Cervix uteri" diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index 91ef888e..e3e3d63f 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -1,18 +1,18 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Grant Name,Name of the grant,,,True,,,,,,"""Research Grant for Cancer Genomics""" -Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,True,,,,,regex search ^CA\d{6}$,DE-FG02-01ER45923 -Grant Abstract,Abstract for the grant,,,True,,,,,,"""Your grant abstract.""" -Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,True,,,,,,R37 -Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",False,,,,,,Public -Grant Theme Name,Theme(s) associated with the grant. ,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,True,,,,,list like,"Interaction, Viral/Bacterial Oncogenesis" -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). ,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,True,,,,,list like,Brigham and Womens Hospital -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). ,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,True,,,,,list like,Stanford -Grant Investigator,Investigator(s) associated witht the grant. ,,,True,,,,,list like,Dr. John Smith -Grant Consortium Name,Consortium(s) associated with the grant. ,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,,HTAN -GrantView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,"""GV12345""" -Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,False,,,,,url, -Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,False,,,,,url, -Grant Start Date,The start date of the grant YYYY-MM-DD format,,,True,,,,,date,01/01/2022 -NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,True,,,,,url,https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521&icde=49775456&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC&pball= -Duration of Funding,"Duration of the funding period, in years",,,False,,,,,int,3 years -Embargo End Date,Date at which an embargo on related resources had lifted,,,False,,,,,date,2023-12-31 +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Grant Name,Name of the grant,,,TRUE,,,,, +Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ +Grant Abstract,Abstract for the grant,,,TRUE,,,,, +Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, +Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, +Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like +Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like +Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, +GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,FALSE,,,,,url +Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,FALSE,,,,,url +Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date +NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url +Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int +Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date \ No newline at end of file diff --git a/modules/grant/exampleColumn.csv b/modules/grant/exampleColumn.csv new file mode 100644 index 00000000..0f727eac --- /dev/null +++ b/modules/grant/exampleColumn.csv @@ -0,0 +1,18 @@ +Attribute,Example +Grant Name,CA202177: Mechanistic Modeling of Cancer Cell Migration +Grant Number,CA202177 +Grant Abstract,This study investigates the mechanisms of cancer cell migration through advanced modeling techniques. +Grant Type,R01 +Grant View,Public Profile View +Grant Theme Name,"Computational Model Development, Mechano-genetics" +Grant Institution Name,"Harvard University, Massachusetts Institute of Technology" +Grant Institution Alias,"Harvard, MIT" +Grant Investigator,"Dr. John Smith, Dr. Jane Doe" +Grant Consortium Name,CSBC +GrantView_id,GrantView_12345 +Grant Synapse Team,https://www.synapse.org/#!Team:123456 +Grant Synapse Project,https://www.synapse.org/#!Synapse:syn12345678 +Grant Start Date,2021-01-01 +NIH RePORTER Link,https://reporter.nih.gov/project-details/12345678 +Duration of Funding,5 +Embargo End Date,2026-01-01 diff --git a/modules/grant/template.csv b/modules/grant/template.csv index b4b3f66c..17b89f12 100644 --- a/modules/grant/template.csv +++ b/modules/grant/template.csv @@ -1,18 +1,18 @@ Attribute,Description,Required,Validation Rules,Examples -Grant Name,Name of the grant,True,_None_,"""Research Grant for Cancer Genomics""" -Grant Number,"Number of the grant (i.e. ""CA------"" format)",True,regex search ^CA\\d{6}$,DE-FG02-01ER45923 -Grant Abstract,Abstract for the grant,True,_None_,"""Your grant abstract.""" -[Grant Type](../valid_values/grant.md#attribute-grant-type),Type of grant,True,_None_,R37 -Grant View,The denormalized manifest for grant submission.,False,_None_,Public -[Grant Theme Name](../valid_values/grant.md#attribute-grant-theme-name),Theme(s) associated with the grant. ,True,list like,"Interaction, Viral/Bacterial Oncogenesis" -[Grant Institution Name](../valid_values/grant.md#attribute-grant-institution-name),The full name of the institution(s) associated with the grant. (e.g. Harvard University). ,True,list like,Brigham and Womens Hospital -[Grant Institution Alias](../valid_values/grant.md#attribute-grant-institution-alias),The alias of the institution(s) associated with the grant (e.g. UCSD). ,True,list like,Stanford -Grant Investigator,Investigator(s) associated witht the grant. ,True,list like,Dr. John Smith -[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. ,True,_None_,HTAN -GrantView_id,A unique primary key that enables record updates using schematic.,True,unique,"""GV12345""" -Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",False,url, -Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",False,url, -Grant Start Date,The start date of the grant YYYY-MM-DD format,True,date,01/01/2022 -NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,True,url,https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521&icde=49775456&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC&pball= -Duration of Funding,"Duration of the funding period, in years",False,int,3 years -Embargo End Date,Date at which an embargo on related resources had lifted,False,date,2023-12-31 +Grant Name,Name of the grant,True,_None_,CA202177: Mechanistic Modeling of Cancer Cell Migration +Grant Number,"Number of the grant (i.e. ""CA------"" format)",True,regex search ^CA\\d{6}$,CA202177 +Grant Abstract,Abstract for the grant,True,_None_,This study investigates the mechanisms of cancer cell migration through advanced modeling techniques. +[Grant Type](../valid_values/grant.md#attribute-grant-type),Type of grant,True,_None_,R01 +Grant View,The denormalized manifest for grant submission.,False,_None_,Public Profile View +[Grant Theme Name](../valid_values/grant.md#attribute-grant-theme-name),Theme(s) associated with the grant. 1...*,True,list like,"Computational Model Development, Mechano-genetics" +[Grant Institution Name](../valid_values/grant.md#attribute-grant-institution-name),The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,True,list like,"Harvard University, Massachusetts Institute of Technology" +[Grant Institution Alias](../valid_values/grant.md#attribute-grant-institution-alias),The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,True,list like,"Harvard, MIT" +Grant Investigator,Investigator(s) associated witht the grant. 1...*,True,list like,"Dr. John Smith, Dr. Jane Doe" +[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. 1...1,True,_None_,CSBC +GrantView_id,A unique primary key that enables record updates using schematic.,True,unique,GrantView_12345 +Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",False,url,https://www.synapse.org/#!Team:123456 +Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",False,url,https://www.synapse.org/#!Synapse:syn12345678 +Grant Start Date,The start date of the grant YYYY-MM-DD format,True,date,2021-01-01 +NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,True,url,https://reporter.nih.gov/project-details/12345678 +Duration of Funding,"Duration of the funding period, in years",False,int,5 +Embargo End Date,Date at which an embargo on related resources had lifted,False,date,2026-01-01 diff --git a/modules/person/annotationProperty.csv b/modules/person/annotationProperty.csv index 4f70a4c2..e3fa6b15 100644 --- a/modules/person/annotationProperty.csv +++ b/modules/person/annotationProperty.csv @@ -1,20 +1,20 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Name,Name of the individual,,,True,,,,,,John Doe -Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,False,,,,,list like,"Bob, Bobby, Robert" -Email,Email address of the individual,,,False,,,,,,johndoe@example.com -Url,"URL, e.g., individual's home page address",,,False,,,,,,https://www.google.com -Orcid Id,Unique identifier (ORCID ID) of the individual,,,False,,,,,regex search \d{4}\-\d{4}\-\d{4}\-\d{3}(\d|X),0000-0002-1825-0097 -Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,,,False,,,,,unique,SP12345678 -Last Known Institution,Last known institutional affiliation of the individual.,,,True,,,,,,Harvard University -Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,True,,,,,list like,Cell and Tissue Mechanics -Chair Roles,"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.","Annual Meeting, None, Steering Committee, Working Group",,True,,,,,list like,Steering Committee -Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,True,,,,,,Yes -Portal Display,Display content in CCKP,"FALSE, TRUE",,True,,,,,,TRUE -Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",False,,,Grant View,,,Public Profile View -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA202177 -Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,True,,,,,list like,PDMC -Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"""23761710,23761712,23762511" -Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"GSE12345" -Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,"R Studio, Python, Jupyter Notebook" -Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,False,,,,,list like,Nan -PersonView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,PersonView_12345 +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Name,Name of the individual,,,TRUE,,,,, +Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Email,Email address of the individual,,,FALSE,,,,, +Url,"URL, e.g., individual's home page address",,,FALSE,,,,, +Orcid Id,Unique identifier (ORCID ID) of the individual,,,FALSE,,,,,regex search \d{4}\-\d{4}\-\d{4}\-\d{3}(\d|X) +Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,,,FALSE,,,,,unique +Last Known Institution,Last known institutional affiliation of the individual.,,,TRUE,,,,, +Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,TRUE,,,,,list like +Chair Roles,"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.","Annual Meeting, None, Steering Committee, Working Group",,TRUE,,,,,list like +Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,TRUE,,,,, +Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, +Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,Grant View,, +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like +Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +PersonView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file diff --git a/modules/person/exampleColumn.csv b/modules/person/exampleColumn.csv new file mode 100644 index 00000000..7c1e3daa --- /dev/null +++ b/modules/person/exampleColumn.csv @@ -0,0 +1,20 @@ +Attribute,Example +Name,John Doe +Alternative Names,"Bob, Bobby, Robert" +Email,johndoe@example.com +Url,https://www.google.com +Orcid Id,0000-0002-1825-0097 +Synapse Profile Id,SP12345678 +Last Known Institution,Harvard University +Working Group Participation,Cell and Tissue Mechanics +Chair Roles,Steering Committee +Consent For Portal Display,Yes +Portal Display,TRUE +Person View,Public Profile View +Person Grant Number,CA202177 +Person Consortium Name,PDMC +Person Publications,"23761710,23761712,23762511" +Person Datasets,GSE12345 +Person Tools,"R Studio, Python, Jupyter Notebook" +Person Educational Resources,Nan +PersonView_id,PersonView_12345 diff --git a/modules/person/template.csv b/modules/person/template.csv index 1b28ba68..7a185b24 100644 --- a/modules/person/template.csv +++ b/modules/person/template.csv @@ -13,7 +13,7 @@ Last Known Institution,Last known institutional affiliation of the individual.,T Person View,The denormalized manifest for person submission.,False,_None_,Public Profile View [Person Grant Number](../valid_values/person.md#attribute-person-grant-number),"Grant number(s) associated with the person. Multiple values permitted, comma separated.",True,list like,CA202177 [Person Consortium Name](../valid_values/person.md#attribute-person-consortium-name),"Consortium(s) associated with the person. Multiple values permitted, comma separated.",True,list like,PDMC -Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",False,list like,"""23761710,23761712,23762511" +Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",False,list like,"23761710,23761712,23762511" Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",False,list like,GSE12345 Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",False,list like,"R Studio, Python, Jupyter Notebook" Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",False,list like,Nan diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index cac68af6..a13aaf2d 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -1,18 +1,18 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,False,,,,,unique,10.1016/j.cell.2016.02.013 -Publication Journal,The name of the periodical publication in which the publication was published.,,,True,,,,,,"""The New England Journal of Medicine""" -Pubmed Id,The PubMed identifier associated with the publication.,,,True,,,,,unique,26571401 -Pubmed Url,Pubmed URL for the publication,,,True,,,,,url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 -Publication Title,Title of the publication,,,True,,,,,,"""The New York Times""" -Publication Year,Year of the publication,,,True,,,,,,2018 -Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"""Cancer Pathways, Inflammation, Tumor Microenvironment""" -Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,True,,,,,list like,"""Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter""" -Publication Abstract,The abstract of the publication.,,,True,,,,,,Nan -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,In Vivo Bioluminescence -Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,True,,,,,list like,Acute Lymphoblastic Leukemia -Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,True,,,,,list like,Brain -Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,True,,,,,,Open Access -Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility",False,,,Study,,,Online -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA202123 -Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,False,,,,,list like,"GSE45678, DOI:10.1000/exampledataset" -PublicationView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,PublicationView_45678 +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,FALSE,,,,,unique +Publication Journal,The name of the periodical publication in which the publication was published.,,,TRUE,,,,, +Pubmed Id,The PubMed identifier associated with the publication.,,,TRUE,,,,,unique +Pubmed Url,Pubmed URL for the publication,,,TRUE,,,,,url +Publication Title,Title of the publication,,,TRUE,,,,, +Publication Year,Year of the publication,,,TRUE,,,,, +Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like +Publication Abstract,The abstract of the publication.,,,TRUE,,,,, +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like +Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like +Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, +Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, GrantView Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,Study,, +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file diff --git a/modules/publication/exampleColumn.csv b/modules/publication/exampleColumn.csv new file mode 100644 index 00000000..cf9d17b6 --- /dev/null +++ b/modules/publication/exampleColumn.csv @@ -0,0 +1,18 @@ +Attribute,Example +Publication Doi,10.1016/j.cell.2016.02.013 +Publication Journal,"The New England Journal of Medicine" +Pubmed Id,26571401 +Pubmed Url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 +Publication Title,"The New York Times" +Publication Year,2018 +Publication Keywords,"Cancer Pathways, Inflammation, Tumor Microenvironment" +Publication Authors,"Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter" +Publication Abstract,Nan +Publication Assay,In Vivo Bioluminescence +Publication Tumor Type,Acute Lymphoblastic Leukemia +Publication Tissue,Brain +Publication Accessibility,Open Access +Publication View,Online +Publication Grant Number,CA202123 +Publication Dataset Alias,"GSE45678, DOI:10.1000/exampledataset" +PublicationView_id,PublicationView_45678 diff --git a/modules/publication/template.csv b/modules/publication/template.csv index cda87329..7ff6c88d 100644 --- a/modules/publication/template.csv +++ b/modules/publication/template.csv @@ -1,12 +1,12 @@ Attribute,Description,Required,Validation Rules,Examples Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,False,unique,10.1016/j.cell.2016.02.013 -Publication Journal,The name of the periodical publication in which the publication was published.,True,_None_,"""The New England Journal of Medicine""" +Publication Journal,The name of the periodical publication in which the publication was published.,True,_None_,The New England Journal of Medicine Pubmed Id,The PubMed identifier associated with the publication.,True,unique,26571401 Pubmed Url,Pubmed URL for the publication,True,url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 -Publication Title,Title of the publication,True,_None_,"""The New York Times""" +Publication Title,Title of the publication,True,_None_,The New York Times Publication Year,Year of the publication,True,_None_,2018 -Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",False,list like,"""Cancer Pathways, Inflammation, Tumor Microenvironment""" -Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",True,list like,"""Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter""" +Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",False,list like,"Cancer Pathways, Inflammation, Tumor Microenvironment" +Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",True,list like,"Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter" Publication Abstract,The abstract of the publication.,True,_None_,Nan [Publication Assay](../valid_values/publication.md#attribute-publication-assay),"Assay(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,In Vivo Bioluminescence [Publication Tumor Type](../valid_values/publication.md#attribute-publication-tumor-type),"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Acute Lymphoblastic Leukemia diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index c9fc9136..13d63e55 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -1,23 +1,24 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination",False,,,Study,,,NaN -DSP Dataset Name,Name of the dataset,,,True,,,,,str,DSP_Dataset_Lung_Research_2021 -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",,,False,,,,,unique,Syn123456 -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,True,,,,,list like,"3D Bioprinting" -DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,True,,,,,list like,Asian Elephant -DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,False,,,,,list like,Lung Carcinoma -DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,False,,,,,list like,Brain -DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,False,,,,,list like,CSV -DataDSP_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,DataDSP_56789 -DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable",,False,,,,,list like,Level 3 -DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,False,,,,,num,25 -DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,False,,,,,num,50000 -DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,False,,,,,num,12 -DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,False,,,,,num,16 GB -DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,True,,,,,date,2022-12-01 -DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,False,,,,,date,01/25/2023 -DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209971 -DSP Dataset Url,The url of where the dataset is or will be stored.,,,False,,,,,url,https://www.example.com/dataset/dsp1234 -DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,False,,,,Data Use Ontology,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." -DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,False,,,,,regex match syn\d+,"DSP IRB Form V2.0, 2020" -DSP Dataset Description,A text description of the files contained in this dataset.,,,False,,,,,str,"A quick description of your data sharing plan." -DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,False,,,,,str,"""/home/user/datasets/dsp_output""" +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, +DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like +DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like +DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like +DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num +DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,FALSE,,,,,num +DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,FALSE,,,,,num +DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,FALSE,,,,,num +DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,TRUE,,,,,date +DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date +DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url +DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like +DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ +DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str +DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str +DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like \ No newline at end of file diff --git a/modules/sharingPlans/exampleColumn.csv b/modules/sharingPlans/exampleColumn.csv new file mode 100644 index 00000000..21a053bb --- /dev/null +++ b/modules/sharingPlans/exampleColumn.csv @@ -0,0 +1,24 @@ +Attribute,Example +DataDSP,NaN +DSP Dataset Name,DSP_Dataset_Lung_Research_2021 +DSP Dataset Alias,Syn123456 +DSP Dataset Assay,3D Bioprinting +DSP Dataset Species,Asian Elephant +DSP Dataset Tumor Type,Lung Carcinoma +DSP Dataset Tissue,Brain +DSP Dataset File Formats,CSV +DataDSP_id,DataDSP_56789 +DSP Dataset Level,Level 3 +DSP Number of Files,25 +DSP Number of Samples,50000 +DSP Number of Participants,12 +DSP Storage Size,16 GB +DSP Planned Upload Date,2022-12-01 +DSP Planned Release Date,01/25/2023 +DSP Dataset Grant Number,CA209971 +DSP Dataset Url,https://www.example.com/dataset/dsp1234 +DSP Data Use Codes,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." +DSP IRB Form,"DSP IRB Form V2.0, 2020" +DSP Dataset Description,A quick description of your data sharing plan. +DSP Dataset Destination,"/home/user/datasets/dsp_output" +DSP Dataset Metadata,"https://example.com/metadata-template-1" \ No newline at end of file diff --git a/modules/sharingPlans/template.csv b/modules/sharingPlans/template.csv index 01497d81..dc7c2625 100644 --- a/modules/sharingPlans/template.csv +++ b/modules/sharingPlans/template.csv @@ -1,7 +1,7 @@ Attribute,Description,Required,Validation Rules,Examples DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_, DSP Dataset Name,Name of the dataset,True,str,DSP_Dataset_Lung_Research_2021 -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the dataset should be used. Must be unique.",False,unique,Syn123456 +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",False,unique,Syn123456 [DSP Dataset Assay](../valid_values/sharingPlans.md#attribute-dsp-dataset-assay),"The type of data contained in this group of files. Multiple values permitted, comma separated.",True,list like,3D Bioprinting [DSP Dataset Species](../valid_values/sharingPlans.md#attribute-dsp-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Asian Elephant [DSP Dataset Tumor Type](../valid_values/sharingPlans.md#attribute-dsp-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Lung Carcinoma @@ -16,8 +16,9 @@ DSP Storage Size,The expected total storage space required for the dataset in gi DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",True,date,2022-12-01 DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,False,date,01/25/2023 [DSP Dataset Grant Number](../valid_values/sharingPlans.md#attribute-dsp-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 -DSP Dataset Url,The url of where the dataset is or will be stored.,False,url,https://www.example.com/dataset/dsp1234 +DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",False,url,https://www.example.com/dataset/dsp1234 [DSP Data Use Codes](../valid_values/sharingPlans.md#attribute-dsp-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ",False,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,False,regex match syn\\d+,"DSP IRB Form V2.0, 2020" DSP Dataset Description,A text description of the files contained in this dataset.,False,str,A quick description of your data sharing plan. -DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,False,str,"""/home/user/datasets/dsp_output""" +DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,False,str,/home/user/datasets/dsp_output +DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,False,list like,https://example.com/metadata-template-1 diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index 01fa211a..d8ad2e01 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -1,14 +1,15 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Reuse Statement, Study Data Use Codes, Study License",False,,,Grant View,,,"""ProjectView_45678""" -Study Name,Name of the study,,,True,,,,,str,"""Effects of Diet and Exercise on Cancer""" -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,True,,,,,str,"""Analysis of Cancerous Cell Response during Exercise""" -Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,True,,,,,list like,"Dr. Jane Smith" -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,False,,,,,str,"""Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced.""" -Study_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,STUDY_2021_01Biology -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,True,,,,CDS/collection,int,5000 -Study De-identification Method Type,General description of the de-identification method,"Manual , Semiautomatic , Automatic , Not applicable",,True,,,,CDS/collection,,Manual -Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,False,,,,CDS/collection,str,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." -Study De-identification Method Software,Software that was used to de-identify the images (if used),,,False,,,,CDS/collection,str,"""Safe Harbor Method Software""" -Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,False,,,,CDS/collection,str,phs000424.v7.p2 -Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,False,,,,CDS/collection,,CC BY-NC 4.0 -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,False,,,,Data Use Ontology, list like,NCU +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, +Study Name,Name of the study,,,TRUE,,,,,str +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str +Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,FALSE,,,,,str +Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int +Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, +Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str +Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str +Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str +Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like +Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, \ No newline at end of file diff --git a/modules/study/exampleColumn.csv b/modules/study/exampleColumn.csv new file mode 100644 index 00000000..901ed36b --- /dev/null +++ b/modules/study/exampleColumn.csv @@ -0,0 +1,15 @@ +Attribute,Example +Study,"ProjectView_45678" +Study Name,"Effects of Diet and Exercise on Cancer" +Study Description,"Analysis of Cancerous Cell Response during Exercise" +Study Investigator,Dr. Jane Smith +Study Reuse Statement,"Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced." +Study_id,STUDY_2021_01Biology +Study Number of Participants,5000 +Study De-identification Method Type,Manual +Study De-identification Method Description,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." +Study De-identification Method Software,"Safe Harbor Method Software" +Study dbGaP Accession Id,phs000424.v7.p2 +Study License,CC BY-NC 4.0 +Study Data Use Codes,NCU +Study Index Date,Diagnosis Date \ No newline at end of file diff --git a/modules/study/template.csv b/modules/study/template.csv index 90ba2801..e070af4f 100644 --- a/modules/study/template.csv +++ b/modules/study/template.csv @@ -1,14 +1,15 @@ Attribute,Description,Required,Validation Rules,Examples -Study,Studies associated with a grant,False,_None_,"""ProjectView_45678""" -Study Name,Name of the study,True,str,"""Effects of Diet and Exercise on Cancer""" -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",True,str,"""Analysis of Cancerous Cell Response during Exercise""" +Study,Studies associated with a grant,False,_None_,ProjectView_45678 +Study Name,Name of the study,True,str,Effects of Diet and Exercise on Cancer +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",True,str,Analysis of Cancerous Cell Response during Exercise Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,True,list like,Dr. Jane Smith -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",False,str,"""Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced.""" +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",False,str,Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced. Study_id,A unique primary key that enables record updates using schematic.,True,unique,STUDY_2021_01Biology Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,True,int,5000 [Study De-identification Method Type](../valid_values/study.md#attribute-study-de-identification-method-type),General description of the de-identification method,True,_None_,Manual Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,False,str,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." -Study De-identification Method Software,Software that was used to de-identify the images (if used),False,str,"""Safe Harbor Method Software""" +Study De-identification Method Software,Software that was used to de-identify the images (if used),False,str,Safe Harbor Method Software Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,False,str,phs000424.v7.p2 [Study License](../valid_values/study.md#attribute-study-license),Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,False,_None_,CC BY-NC 4.0 [Study Data Use Codes](../valid_values/study.md#attribute-study-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes",False, list like,NCU +[Study Index Date](../valid_values/study.md#attribute-study-index-date),"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.",False,_None_,Diagnosis Date diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index 8b568b56..5e372f51 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -1,42 +1,43 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Examples -Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,False,,,,biotoolsschema,,Nan -Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",,,False,,,,biotoolsschema,,"""export GIT_TRACE=1""" -Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,False,,,,schema.org,"list like, url","Python, pip, pandas, matplotlib" -Tool Cost,Monetary cost of acquiring the software.,"Commercial, Free of Charge, Free of Charge (With Restrictions)",,False,,,,biotoolsschema,,Commercial -Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",,,False,,,,schema.org,date,11/04/2021 15:30:45 -Tool Description,Textual description of the tool.,,,True,,,,biotoolsschema,,"This is a Python tool that ..." -Tool Documentation Note,Comment about the documentation.,,,False,,,,biotoolsschema,,"""This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades.""" -Tool Documentation Type,"Type of documentation that is linked to. Multiple values permitted, comma separated.","API Documentation, Citation Instructions, Code of Conduct, Command-Line Options, Contributions Policy, FAQ, General, Governance, Installation Instructions, Other, Quick Start Guide, Release Notes, Terms of Use, Training Material, User Manual",,False,,,,biotoolsschema,list like,API Documentation -Tool Documentation Url,Link to documentation on the web for the tool.,,,False,,,,biotoolsschema,,"""https://docs.example.com/""" -Tool Download Note,Comment about the download.,,,False,,,,biotoolsschema,,"""Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software.""" -Tool Download Type,"The type of data, information, or system that is obtained when the link is resolved.","API Specification, Binaries, Biological Data, Command-Line Specification, Container File, Downloads Page, Icon, Other, Screenshot, Software Package, Source Code, Test Data, Test Script, Tool Wrapper (CWL), Tool Wrapper (Galaxy), Tool Wrapper (Taverna), Tool wrapper (Other), VM Image",,False,,,,biotoolsschema,,API Specification -Tool Download Url,Link to download (or repo providing a download) for the software.,,,False,,,,biotoolsschema,,https://example.com/tool-download/version2.0 -Tool Download Version,Version information (typically a version number) of the software applicable to this download.,,,False,,,,biotoolsschema,,1.0.3 -Tool Entity Name,Name of the entities that may be credited,,,False,,,,,list like,"Python, pip" -Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,True,,,,biotoolsschema,list like,"Developer, Maintainer, Provider, Documentor, Contributor" -Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,True,,,,biotoolsschema,list like,Person -Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,False,,,,biotoolsschema,,"The tool is used to programmatically ..." -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209975 -Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,True,,,,biotoolsschema,url,https://www.example.com/ -Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,"DNA Sequence" -Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,CSV -Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,False,,,,biotoolsschema,list like,Python -Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,False,,,,biotoolsschema,list like,Apache-2.0 -Tool Link Note,Comment about the link.,,,False,,,,biotoolsschema,,"""This tool cannot be accessed without a valid institutional login.""" -Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,False,,,,biotoolsschema,list like,Social Media -Tool Link Url,A link of some relevance to the software (URL).,,,False,,,,biotoolsschema,,https://www.example.com/tool-info.html -Tool Name,Canonical tool name provided by the tool developer or service provider.,,,True,,,,biotoolsschema,unique,Adobe Photoshop -Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,False,,,,biotoolsschema,list like,Linux -Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,True,,,,biotoolsschema,list like,"DNA Barcoding" -Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,True,,,,biotoolsschema,list like,"Accession, Alignment,Biological Model ID" -Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,True,,,,biotoolsschema,list like,"FASTQ" -Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,False,,,,CWL,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." -Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,True,,,,CWL,,True -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,True,,,,,list like,CA209975 -Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,False,,,,,int,26760201 -Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,True,,,,schema.org,date,"January 5, 2022" -Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,False,,,,biotoolsschema,list like,Bioinformatics -Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,False,,,,biotoolsschema,list like,Command-Line Tool -Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,False,,,,biotoolsschema,,3.2.1 -Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, Study key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",False,,,Study,,,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." -ToolView_id,A unique primary key that enables record updates using schematic.,,,True,,,,,unique,ToolView_6749 +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,FALSE,,,,biotoolsschema, +Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",,,FALSE,,,,biotoolsschema, +Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,FALSE,,,,schema.org,"list like, url" +Tool Cost,Monetary cost of acquiring the software.,"Commercial, Free of Charge, Free of Charge (With Restrictions)",,FALSE,,,,biotoolsschema, +Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",,,FALSE,,,,schema.org,date +Tool Description,Textual description of the tool.,,,TRUE,,,,biotoolsschema, +Tool Documentation Note,Comment about the documentation.,,,FALSE,,,,biotoolsschema, +Tool Documentation Type,"Type of documentation that is linked to. Multiple values permitted, comma separated.","API Documentation, Citation Instructions, Code of Conduct, Command-Line Options, Contributions Policy, FAQ, General, Governance, Installation Instructions, Other, Quick Start Guide, Release Notes, Terms of Use, Training Material, User Manual",,FALSE,,,,biotoolsschema,list like +Tool Documentation Url,Link to documentation on the web for the tool.,,,FALSE,,,,biotoolsschema, +Tool Download Note,Comment about the download.,,,FALSE,,,,biotoolsschema, +Tool Download Type,"The type of data, information, or system that is obtained when the link is resolved.","API Specification, Binaries, Biological Data, Command-Line Specification, Container File, Downloads Page, Icon, Other, Screenshot, Software Package, Source Code, Test Data, Test Script, Tool Wrapper (CWL), Tool Wrapper (Galaxy), Tool Wrapper (Taverna), Tool wrapper (Other), VM Image",,FALSE,,,,biotoolsschema, +Tool Download Url,Link to download (or repo providing a download) for the software.,,,FALSE,,,,biotoolsschema, +Tool Download Version,Version information (typically a version number) of the software applicable to this download.,,,FALSE,,,,biotoolsschema, +Tool Entity Name,Name of the entities that may be credited,,,FALSE,,,,,list like +Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,TRUE,,,,biotoolsschema,list like +Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,TRUE,,,,biotoolsschema,list like +Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,FALSE,,,,biotoolsschema, +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,TRUE,,,,biotoolsschema,url +Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like +Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like +Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,FALSE,,,,biotoolsschema,list like +Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,biotoolsschema,list like +Tool Link Note,Comment about the link.,,,FALSE,,,,biotoolsschema, +Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,FALSE,,,,biotoolsschema,list like +Tool Link Url,A link of some relevance to the software (URL).,,,FALSE,,,,biotoolsschema, +Tool Name,Canonical tool name provided by the tool developer or service provider.,,,TRUE,,,,biotoolsschema,unique +Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,FALSE,,,,biotoolsschema,list like +Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,TRUE,,,,biotoolsschema,list like +Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like +Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like +Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,FALSE,,,,CWL,list like +Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,TRUE,,,,CWL, +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int +Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,TRUE,,,,schema.org,date +Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,FALSE,,,,biotoolsschema,list like +Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,FALSE,,,,biotoolsschema,list like +Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,FALSE,,,,biotoolsschema, +Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, +ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url \ No newline at end of file diff --git a/modules/tool/exampleColumn.csv b/modules/tool/exampleColumn.csv new file mode 100644 index 00000000..546acbcf --- /dev/null +++ b/modules/tool/exampleColumn.csv @@ -0,0 +1,43 @@ +Attribute,Example +Tool Accessibility,Nan +Tool Cmd,"export GIT_TRACE=1" +Tool Compute Requirements,"Python, pip, pandas, matplotlib" +Tool Cost,Commercial +Tool Date Last Modified,11/04/2021 15:30:45 +Tool Description,"This is a Python tool that ..." +Tool Documentation Note,"This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades." +Tool Documentation Type,API Documentation +Tool Documentation Url,"https://docs.example.com/" +Tool Download Note,"Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software." +Tool Download Type,API Specification +Tool Download Url,https://example.com/tool-download/version2.0 +Tool Download Version,1.0.3 +Tool Entity Name,"Python, pip" +Tool Entity Role,"Developer, Maintainer, Provider, Documentor, Contributor" +Tool Entity Type,Person +Tool Function Note,"The tool is used to programmatically ..." +Tool Grant Number,CA209975 +Tool Homepage,https://www.example.com/ +Tool Input Data,DNA Sequence +Tool Input Format,CSV +Tool Language,Python +Tool License,Apache-2.0 +Tool Link Note,"This tool cannot be accessed without a valid institutional login." +Tool Link Type,Social Media +Tool Link Url,https://www.example.com/tool-info.html +Tool Name,Adobe Photoshop +Tool Operating System,Linux +Tool Operation,DNA Barcoding +Tool Output Data,"Accession, Alignment,Biological Model ID" +Tool Output Format,FASTQ +Tool Package Dependencies,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." +Tool Package Dependencies Present,True +Tool Grant Number,CA209975 +Tool Pubmed Id,26760201 +Tool Release Date,"January 5, 2022" +Tool Topic,Bioinformatics +Tool Type,Command-Line Tool +Tool Version,3.2.1 +Tool View,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." +ToolView_id,ToolView_6749 +Tool Doi,https://doi.org/10.1234/example1 diff --git a/modules/tool/template.csv b/modules/tool/template.csv index 85ffb7e6..fe4db968 100644 --- a/modules/tool/template.csv +++ b/modules/tool/template.csv @@ -1,14 +1,14 @@ Attribute,Description,Required,Validation Rules,Examples [Tool Accessibility](../valid_values/tool.md#attribute-tool-accessibility),Whether there are non-monetary restrictions on accessing an online service.,False,_None_,Nan -Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",False,_None_,"""export GIT_TRACE=1""" +Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",False,_None_,export GIT_TRACE=1 Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",False,"list like, url","Python, pip, pandas, matplotlib" [Tool Cost](../valid_values/tool.md#attribute-tool-cost),Monetary cost of acquiring the software.,False,_None_,Commercial Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",False,date,11/04/2021 15:30:45 Tool Description,Textual description of the tool.,True,_None_,This is a Python tool that ... -Tool Documentation Note,Comment about the documentation.,False,_None_,"""This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades.""" +Tool Documentation Note,Comment about the documentation.,False,_None_,This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades. [Tool Documentation Type](../valid_values/tool.md#attribute-tool-documentation-type),"Type of documentation that is linked to. Multiple values permitted, comma separated.",False,list like,API Documentation -Tool Documentation Url,Link to documentation on the web for the tool.,False,_None_,"""https://docs.example.com/""" -Tool Download Note,Comment about the download.,False,_None_,"""Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software.""" +Tool Documentation Url,Link to documentation on the web for the tool.,False,_None_,https://docs.example.com/ +Tool Download Note,Comment about the download.,False,_None_,"Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software." [Tool Download Type](../valid_values/tool.md#attribute-tool-download-type),"The type of data, information, or system that is obtained when the link is resolved.",False,_None_,API Specification Tool Download Url,Link to download (or repo providing a download) for the software.,False,_None_,https://example.com/tool-download/version2.0 Tool Download Version,Version information (typically a version number) of the software applicable to this download.,False,_None_,1.0.3 @@ -17,12 +17,13 @@ Tool Entity Name,Name of the entities that may be credited,False,list like,"Pyth [Tool Entity Type](../valid_values/tool.md#attribute-tool-entity-type),"Types of entities that may be credited, e.g. β€˜Person’.",True,list like,Person Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",False,_None_,The tool is used to programmatically ... [Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 +[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",True,url,https://www.example.com/ [Tool Input Data](../valid_values/tool.md#attribute-tool-input-data),"Type of primary input data. Multiple values permitted, comma separated.",True,list like,DNA Sequence [Tool Input Format](../valid_values/tool.md#attribute-tool-input-format),"Allowed format(s) of the input data. Multiple values permitted, comma separated.",True,list like,CSV [Tool Language](../valid_values/tool.md#attribute-tool-language),"Name of programming language the software source code was written in. Multiple values permitted, comma separated.",False,list like,Python [Tool License](../valid_values/tool.md#attribute-tool-license),"Software or data usage license. Multiple values permitted, comma separated.",False,list like,Apache-2.0 -Tool Link Note,Comment about the link.,False,_None_,"""This tool cannot be accessed without a valid institutional login.""" +Tool Link Note,Comment about the link.,False,_None_,This tool cannot be accessed without a valid institutional login. [Tool Link Type](../valid_values/tool.md#attribute-tool-link-type),"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.",False,list like,Social Media Tool Link Url,A link of some relevance to the software (URL).,False,_None_,https://www.example.com/tool-info.html Tool Name,Canonical tool name provided by the tool developer or service provider.,True,unique,Adobe Photoshop @@ -33,6 +34,7 @@ Tool Name,Canonical tool name provided by the tool developer or service provider Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",False,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." [Tool Package Dependencies Present](../valid_values/tool.md#attribute-tool-package-dependencies-present),Indicates whether the required package dependencies for tool are present.,True,_None_,True [Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 +[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,False,int,26760201 Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,True,date,"January 5, 2022" [Tool Topic](../valid_values/tool.md#attribute-tool-topic),"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.",False,list like,Bioinformatics @@ -40,3 +42,4 @@ Tool Release Date,The release date of a product or product model. This can be us Tool Version,Version information (typically a version number) of the software applicable to this entry.,False,_None_,3.2.1 Tool View,The denormalized manifest for tool submission.,False,_None_,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." ToolView_id,A unique primary key that enables record updates using schematic.,True,unique,ToolView_6749 +Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,True,url,https://doi.org/10.1234/example1 diff --git a/scripts/hooks.py b/scripts/hooks.py index dc663993..74e1d4a6 100644 --- a/scripts/hooks.py +++ b/scripts/hooks.py @@ -30,10 +30,20 @@ def on_pre_build(config, **kwargs) -> None: """ for model in DATA_MODELS: parent = join("modules", model) - df = ( - pd.read_csv(join(parent, 'annotationProperty.csv')) - .fillna("")) + # Read both annotation properties and examples + annotation_df = pd.read_csv(join(parent, 'annotationProperty.csv'), quoting=1).fillna("") + examples_df = pd.read_csv(join(parent, 'exampleColumn.csv'), quoting=1).fillna("") + # First select only the columns we want from annotation_df + df = annotation_df[['Attribute', 'Description', 'Required', 'Validation Rules', 'Valid Values']] + + # Then add the Example column and rename it to Examples + df = df.merge( + examples_df[['Attribute', 'Example']], + on='Attribute', + how='left' + ).rename(columns={'Example': 'Examples'}) + # If attribute has a list of valid values, create a link. for _, row in df[df['Valid Values'].ne("")].iterrows(): attr_link = "[" + row['Attribute'] + ( @@ -50,4 +60,7 @@ def on_pre_build(config, **kwargs) -> None: # Indicate "None" if there are no validation rules for the attribute. df.loc[df['Validation Rules'] == "", "Validation Rules"] = "_None_" - df[COLS_TO_RENDER].to_csv(join(parent, 'template.csv'), index=False) + # Drop the Valid Values column before final output + df = df.drop(columns=['Valid Values']) + + df[COLS_TO_RENDER].to_csv(join(parent, 'template.csv'), index=False) \ No newline at end of file From 96883e62b80cb714a85c563b1b671bc103f7378b Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Thu, 20 Feb 2025 23:42:11 -0800 Subject: [PATCH 009/106] update to main branch --- modules/file/template.csv | 3 +++ modules/sharingPlans/template.csv | 5 +++++ modules/study/template.csv | 3 +++ modules/tool/template.csv | 2 ++ 4 files changed, 13 insertions(+) diff --git a/modules/file/template.csv b/modules/file/template.csv index 9daa363c..2f38e943 100644 --- a/modules/file/template.csv +++ b/modules/file/template.csv @@ -4,13 +4,16 @@ File Design,The overall design of the dataset or file.,False,str,CSV File Url,The url of where the file is stored.,True,url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) [File Assay](../valid_values/file.md#attribute-file-assay),The assay the file is representative of.,True,_None_,RNA Sequencing [File Level](../valid_values/file.md#attribute-file-level),The processing level the file can be mapped to. ,True,_None_,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" +[File Level](../valid_values/file.md#attribute-file-level),The processing level the file can be mapped to. ,True,_None_,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" [File Species](../valid_values/file.md#attribute-file-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Human [File Tumor Type](../valid_values/file.md#attribute-file-tumor-type),"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.",False,list like,Breast Carcinoma [File Tissue](../valid_values/file.md#attribute-file-tissue),"Tissue type(s) associated with the file. Multiple values permitted, comma separated.",False,list like,Breast File View,The denormalized manifest for file submission.,False,_None_,List View +File View,The denormalized manifest for file submission.,False,_None_,List View FileView_id,A unique primary key that enables record updates using schematic.,True,unique,"""FileView_123456""" File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,False,str, [File Longitudinal Event Type](../valid_values/file.md#attribute-file-longitudinal-event-type),"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",False,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." +[File Longitudinal Event Type](../valid_values/file.md#attribute-file-longitudinal-event-type),"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",False,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",False,int,10-9876543210-12 File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,False,str,Seconds File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,False,num,"""2 hours 45 minutes""" diff --git a/modules/sharingPlans/template.csv b/modules/sharingPlans/template.csv index dc7c2625..09d27e21 100644 --- a/modules/sharingPlans/template.csv +++ b/modules/sharingPlans/template.csv @@ -1,7 +1,9 @@ Attribute,Description,Required,Validation Rules,Examples DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_, +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_, DSP Dataset Name,Name of the dataset,True,str,DSP_Dataset_Lung_Research_2021 DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",False,unique,Syn123456 +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",False,unique,Syn123456 [DSP Dataset Assay](../valid_values/sharingPlans.md#attribute-dsp-dataset-assay),"The type of data contained in this group of files. Multiple values permitted, comma separated.",True,list like,3D Bioprinting [DSP Dataset Species](../valid_values/sharingPlans.md#attribute-dsp-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Asian Elephant [DSP Dataset Tumor Type](../valid_values/sharingPlans.md#attribute-dsp-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Lung Carcinoma @@ -9,6 +11,7 @@ DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id ass [DSP Dataset File Formats](../valid_values/sharingPlans.md#attribute-dsp-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,CSV DataDSP_id,A unique primary key that enables record updates using schematic.,True,unique,DataDSP_56789 [DSP Dataset Level](../valid_values/sharingPlans.md#attribute-dsp-dataset-level),The level of processing associated with the dataset.,False,list like,Level 3 +[DSP Dataset Level](../valid_values/sharingPlans.md#attribute-dsp-dataset-level),The level of processing associated with the dataset.,False,list like,Level 3 DSP Number of Files,The number of files that will be uploaded as part of this dataset.,False,num,25 DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,False,num,50000 DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,False,num,12 @@ -17,8 +20,10 @@ DSP Planned Upload Date,"A non-binding, estimated date by which the files are ex DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,False,date,01/25/2023 [DSP Dataset Grant Number](../valid_values/sharingPlans.md#attribute-dsp-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",False,url,https://www.example.com/dataset/dsp1234 +DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",False,url,https://www.example.com/dataset/dsp1234 [DSP Data Use Codes](../valid_values/sharingPlans.md#attribute-dsp-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ",False,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,False,regex match syn\\d+,"DSP IRB Form V2.0, 2020" DSP Dataset Description,A text description of the files contained in this dataset.,False,str,A quick description of your data sharing plan. DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,False,str,/home/user/datasets/dsp_output DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,False,list like,https://example.com/metadata-template-1 +DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,False,list like,https://example.com/metadata-template-1 diff --git a/modules/study/template.csv b/modules/study/template.csv index e070af4f..f4a26642 100644 --- a/modules/study/template.csv +++ b/modules/study/template.csv @@ -1,5 +1,6 @@ Attribute,Description,Required,Validation Rules,Examples Study,Studies associated with a grant,False,_None_,ProjectView_45678 +Study,Studies associated with a grant,False,_None_,ProjectView_45678 Study Name,Name of the study,True,str,Effects of Diet and Exercise on Cancer Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",True,str,Analysis of Cancerous Cell Response during Exercise Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,True,list like,Dr. Jane Smith @@ -7,9 +8,11 @@ Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived conten Study_id,A unique primary key that enables record updates using schematic.,True,unique,STUDY_2021_01Biology Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,True,int,5000 [Study De-identification Method Type](../valid_values/study.md#attribute-study-de-identification-method-type),General description of the de-identification method,True,_None_,Manual +[Study De-identification Method Type](../valid_values/study.md#attribute-study-de-identification-method-type),General description of the de-identification method,True,_None_,Manual Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,False,str,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." Study De-identification Method Software,Software that was used to de-identify the images (if used),False,str,Safe Harbor Method Software Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,False,str,phs000424.v7.p2 [Study License](../valid_values/study.md#attribute-study-license),Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,False,_None_,CC BY-NC 4.0 [Study Data Use Codes](../valid_values/study.md#attribute-study-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes",False, list like,NCU [Study Index Date](../valid_values/study.md#attribute-study-index-date),"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.",False,_None_,Diagnosis Date +[Study Index Date](../valid_values/study.md#attribute-study-index-date),"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.",False,_None_,Diagnosis Date diff --git a/modules/tool/template.csv b/modules/tool/template.csv index fe4db968..cf7c2987 100644 --- a/modules/tool/template.csv +++ b/modules/tool/template.csv @@ -41,5 +41,7 @@ Tool Release Date,The release date of a product or product model. This can be us [Tool Type](../valid_values/tool.md#attribute-tool-type),"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.",False,list like,Command-Line Tool Tool Version,Version information (typically a version number) of the software applicable to this entry.,False,_None_,3.2.1 Tool View,The denormalized manifest for tool submission.,False,_None_,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." +Tool View,The denormalized manifest for tool submission.,False,_None_,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." ToolView_id,A unique primary key that enables record updates using schematic.,True,unique,ToolView_6749 Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,True,url,https://doi.org/10.1234/example1 +Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,True,url,https://doi.org/10.1234/example1 From bb30013a393c0ef6105638dbaa36d4e14beb4c4a Mon Sep 17 00:00:00 2001 From: "mc2center-bot[bot]" Date: Fri, 21 Feb 2025 07:58:55 +0000 Subject: [PATCH 010/106] build jsonld --- mc2.model.csv | 13 +++++++++++++ modules/dataset/annotationProperty.csv | 2 +- modules/education/annotationProperty.csv | 2 +- modules/file/annotationProperty.csv | 2 +- modules/grant/annotationProperty.csv | 2 +- modules/person/annotationProperty.csv | 2 +- modules/publication/annotationProperty.csv | 2 +- modules/sharingPlans/annotationProperty.csv | 3 +-- modules/study/annotationProperty.csv | 3 +-- modules/tool/annotationProperty.csv | 3 +-- 10 files changed, 22 insertions(+), 12 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 4375e766..07968079 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -95,13 +95,16 @@ File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, +File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, +File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str +File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num @@ -433,8 +436,10 @@ Genomic Reference,Exact version of the human genome reference used in the alignm Genomic Reference URL,Link to human genome sequence; ftp or reference URL will be accepted.,,,TRUE,,shared,,HTAN,url Genome Annotation URL,Link to the human genome annotation (GTF) file; ftp or reference URL will be accepted.,,,TRUE,,shared,,HTAN,url DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like @@ -442,6 +447,7 @@ DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like +DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,FALSE,,,,,num DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,FALSE,,,,,num @@ -450,11 +456,14 @@ DSP Planned Upload Date,"A non-binding, estimated date by which the files are ex DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url +DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like +DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, Study Name,Name of the study,,,TRUE,,,,,str Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str @@ -463,12 +472,14 @@ Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived conten Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, +Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, +Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, Theme,Themes associated with resources derived from consortia activities,,"Component, Theme Name, Theme Display Name, Theme Description",FALSE,,,,, Theme Name,"Machine readable name of the research theme. (e.g. compuational_resource, drug_resistance_sensitivity).",,,TRUE,,,,, Theme Display Name,"Human readable display name of the research theme. (e.g. Computational Resource, Drug Resistance/Sensitivity)",,,TRUE,,,,, @@ -513,8 +524,10 @@ Tool Topic,"General scientific domain the software serves, or other general cate Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,FALSE,,,,biotoolsschema,list like Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,FALSE,,,,biotoolsschema, Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, +Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url +Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url 10x Visium Auxiliary Files,"Auxiliary data associated with spot/slide analysis (aligned Images, quality control files, etc) from Spatial Transcriptomics.",,"Component, Filename, 10xVisiumAuxiliaryFiles_id, 10xVisiumRNALevel1 Key, 10xVisiumRNALevel2 Key, 10xVisiumRNALevel3 Key, 10xVisiumRNALevel4 Key, Visium Run ID, Visium File Type, Visium Slide ID, Capture Area, Workflow Version, Workflow Link",FALSE,,visium,"10x Visium RNA Level 1, 10x Visium RNA Level 2, 10x Visium RNA Level 3, 10x Visium RNA Level 4",HTAN, 10xVisiumAuxiliaryFiles_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique 10x Visium RNA Level 1,Files contain raw RNA-seq data associated with spot/slide data.,,"Component, 10xVisiumRNALevel1_id, Filename, Visium Run ID, NGS Read Indicator, Visium Spatial Read1, Visium Spatial Read2, Visium Spatial Library Construction Method, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index, NGS RNA End Bias, NGS RNA Reverse Transcription Primer, NGS Sequencing Platform, Visium Capture Area, Protocol Link, Visium Slide Version, Visium Slide ID, Visium Image Re-orientation, Visium Permeabilization Time, NGS RNA RIN, NGS RNA DV200",FALSE,,,File View,, diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index 94138aa5..ca17b13a 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -13,4 +13,4 @@ Dataset File Formats,"A list of file formats associated with the dataset. Multip Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file +DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/education/annotationProperty.csv b/modules/education/annotationProperty.csv index 3934f7b5..09a1e412 100644 --- a/modules/education/annotationProperty.csv +++ b/modules/education/annotationProperty.csv @@ -23,4 +23,4 @@ Resource Media Accessibility,"Accessibility features (Alternative Text, Audio De Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,FALSE,,,,OER,list like Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/dataset,list like Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/tool,list like -EducationalResource_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file +EducationalResource_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index 295a2da4..95fac3ce 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -20,4 +20,4 @@ File Longitudinal Sequential Time Elapsed,The time elapsed between collecting th File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique -File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like \ No newline at end of file +File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index e3e3d63f..000dafb7 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -15,4 +15,4 @@ Grant Synapse Project,"The Synapse project associated with the grant, created by Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int -Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date \ No newline at end of file +Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date diff --git a/modules/person/annotationProperty.csv b/modules/person/annotationProperty.csv index e3fa6b15..ffdcd7c4 100644 --- a/modules/person/annotationProperty.csv +++ b/modules/person/annotationProperty.csv @@ -17,4 +17,4 @@ Person Publications,"A list of the pubmed Ids associated with the person. Multip Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -PersonView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file +PersonView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index a13aaf2d..7f082411 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -15,4 +15,4 @@ Publication Accessibility,Whether there are non-monetary restrictions on accessi Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, GrantView Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,Study,, Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique \ No newline at end of file +PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index caeddedc..f600c968 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -26,5 +26,4 @@ DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like - -DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like \ No newline at end of file +DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index 4971a646..c43afcfc 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -15,5 +15,4 @@ Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a s Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, - -Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, \ No newline at end of file +Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index e4e23106..949388f4 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -42,5 +42,4 @@ Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_i Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url - -Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url \ No newline at end of file +Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url From 67839817fb7179ea63d57b8babd05714f049d98d Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Fri, 21 Feb 2025 13:55:56 -0800 Subject: [PATCH 011/106] Update dataset_species.csv Add Not Applicable as a valid value --- modules/shared/dataset_species.csv | 1 + 1 file changed, 1 insertion(+) diff --git a/modules/shared/dataset_species.csv b/modules/shared/dataset_species.csv index 27e75880..b1669d5c 100644 --- a/modules/shared/dataset_species.csv +++ b/modules/shared/dataset_species.csv @@ -15,6 +15,7 @@ Human Patient,,,,False,,Dataset Species,,,,,9606.0,,, Human Cell Line,,,,False,,Dataset Species,,,,,9606.0,,, Mouse,,,,False,,species,,NCBITAXON,,,10090.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=info&id=10090,, Multispecies,,,,False,,species,,,,,,,, +Not Applicable,,,,False,,species,,,,,,,, Opossum,,,,False,,species,,NCBITAXON,,,13616.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=info&id=13616,, Rabbit,,,,False,,species,,NCBITAXON,,Oryctolagus cuniculus,9986.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9986&lvl=3&lin=f&keep=1&srchmode=1&unlock,, Rat,,,,False,,species,,NCBITAXON,,,10116.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=info&id=10116,, From a8bec36d3a2e4d8239b38c4465c5f77a0c564495 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Fri, 21 Feb 2025 13:56:42 -0800 Subject: [PATCH 012/106] Update mc2.DatasetView.schema.json Update format and content of auto-generate Dataset View JSON schema --- json_schemas/mc2.DatasetView.schema.json | 71 +++++++++++++++++++++--- 1 file changed, 64 insertions(+), 7 deletions(-) diff --git a/json_schemas/mc2.DatasetView.schema.json b/json_schemas/mc2.DatasetView.schema.json index 7fff11ae..5802506d 100644 --- a/json_schemas/mc2.DatasetView.schema.json +++ b/json_schemas/mc2.DatasetView.schema.json @@ -4,9 +4,21 @@ "title": "DatasetView_validation", "type": "object", "properties": { - "Study Key": {}, - "PublicationView Key": {}, - "GrantView Key": {}, + "Study Key": { + "type": "string", + "title": "StudyKey", + "description": "The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components." + }, + "PublicationView Key": { + "type": "string", + "title": "PublicationViewKey", + "description": "Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection." + }, + "GrantView Key": { + "type": "string", + "title": "GrantViewKey", + "description": "Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection." + }, "Dataset File Formats": { "type": "array", "items": { @@ -96,15 +108,25 @@ }, "maxItems": 80 }, - "Dataset Design": {}, + "Dataset Design": { + "type": "string", + "title": "DatasetDesign", + "description": "The overall design of the dataset.", + "maxLength": 500 + }, "Dataset Name": { "not": { "type": "null" }, - "minLength": 1 + "type": "string", + "title": "DatasetName", + "description": "Name of the dataset.", + "maxLength": 250 }, "Data Use Codes": { "type": "array", + "title": "DataUseCodes", + "description": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes", "items": { "enum": [ "US", @@ -137,12 +159,18 @@ "maxItems": 24 }, "Dataset Alias": { + "type": "string", + "title": "DatasetAlias", + "description": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345 or the dataset Synapse Id", "not": { "type": "null" }, "minLength": 1 }, "Dataset Url": { + "type": "string", + "title": "DatasetUrl", + "description": "The url of where the dataset is stored.", "not": { "type": "null" }, @@ -150,6 +178,8 @@ }, "Dataset Assay": { "type": "array", + "title": "DatasetAssay", + "description": "The assay(s) the dataset is representative of.", "items": { "enum": [ "3C-qPCR", @@ -535,8 +565,16 @@ }, "maxItems": 379 }, - "Dataset Description": {}, + "Dataset Description": { + "type": "string", + "title": "DatasetDescription", + "description": "Text description of the dataset.", + "maxLength": 500 + }, "DatasetView_id": { + "type": "string", + "title": "DatasetViewid", + "description": "A unique primary key that enables record updates using schematic", "not": { "type": "null" }, @@ -544,6 +582,8 @@ }, "Dataset Species": { "type": "array", + "title": "DatasetSpecies", + "description": "The species the data was collected on.", "items": { "enum": [ "Boar", @@ -580,6 +620,8 @@ }, "Dataset Tumor Type": { "type": "array", + "title": "DatasetTumorType", + "description": "The tumor type(s), if applicable, of the data collected on", "items": { "enum": [ "Angiosarcoma", @@ -775,6 +817,8 @@ }, "Dataset Tissue": { "type": "array", + "title": "DatasetTissue", + "description": "Tissue type(s) associated with the dataset", "items": { "enum": [ "Cervix Uteri", @@ -897,6 +941,18 @@ "maxItems": 114 }, "Component": { + "type": "string", + "title": "Component", + "description": "Type of metadata associated with this entity.", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Doi":{ + "type": "string", + "title": "DatasetDoi", + "description": "The Digital Object Identifier (DOI) associated with the dataset.", "not": { "type": "null" }, @@ -910,6 +966,7 @@ "Dataset Assay", "DatasetView_id", "Dataset Species", - "Component" + "Component", + "Dataset Doi" ] } \ No newline at end of file From 8b7cd18f100ca82848928109b2a0f4eb247177d4 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Fri, 21 Feb 2025 13:57:42 -0800 Subject: [PATCH 013/106] Create MC2_example_AR-DUO_schema.json Template for Synapse project schema that relates DUO codes to access restrictions --- json_schemas/MC2_example_AR-DUO_schema.json | 58 +++++++++++++++++++++ 1 file changed, 58 insertions(+) create mode 100644 json_schemas/MC2_example_AR-DUO_schema.json diff --git a/json_schemas/MC2_example_AR-DUO_schema.json b/json_schemas/MC2_example_AR-DUO_schema.json new file mode 100644 index 00000000..25d747e0 --- /dev/null +++ b/json_schemas/MC2_example_AR-DUO_schema.json @@ -0,0 +1,58 @@ +{ + "$schema": "http://json-schema.org/draft-07/schema", + "title": "MC2 Example AR-DUO schema", + "$id": "MC2-Infrastructure-Design-AR-DUO.1.0", + "description": "This examlpe schema defines how DUO should be used for MC2 Center Synapse projects.", + "allOf": [ + { + "if": { + "properties": { + "duoCodes": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": "RTN" + } + } + } + }, + "then": { + "properties": { + "_accessRequirementIds": { + "type": "array", + "contains": { + "const": 0 + } + } + } + } + }, + { + "if": { + "properties": { + "duoCodes": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": "NPU" + } + } + } + }, + "then": { + "properties": { + "_accessRequirementIds": { + "type": "array", + "contains": { + "const": 0 + } + } + } + } + } + ] +} \ No newline at end of file From 0970dd3c6f72b0d091dfe73f3af77f46d3f9f65d Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Fri, 21 Feb 2025 14:32:34 -0800 Subject: [PATCH 014/106] Rename DUO-AR schema to fit expected format --- ...{MC2_example_AR-DUO_schema.json => mc2.duoCode-AR.schema.json} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename json_schemas/{MC2_example_AR-DUO_schema.json => mc2.duoCode-AR.schema.json} (100%) diff --git a/json_schemas/MC2_example_AR-DUO_schema.json b/json_schemas/mc2.duoCode-AR.schema.json similarity index 100% rename from json_schemas/MC2_example_AR-DUO_schema.json rename to json_schemas/mc2.duoCode-AR.schema.json From 18eb642a080b0a4b6f3c33f3b4b83e31143efa4e Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Fri, 21 Feb 2025 15:20:15 -0800 Subject: [PATCH 015/106] Update name to work with schema service testing --- .../{mc2.duoCode-AR.schema.json => mc2.duoCodeAR.schema.json} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename json_schemas/{mc2.duoCode-AR.schema.json => mc2.duoCodeAR.schema.json} (100%) diff --git a/json_schemas/mc2.duoCode-AR.schema.json b/json_schemas/mc2.duoCodeAR.schema.json similarity index 100% rename from json_schemas/mc2.duoCode-AR.schema.json rename to json_schemas/mc2.duoCodeAR.schema.json From 9af132d8ecf1dca16f612d64fa2061ecf0a4ed5f Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Fri, 21 Feb 2025 15:50:21 -0800 Subject: [PATCH 016/106] Update mc2.DatasetView.schema.json Remove maxItems from JSON schema --- json_schemas/mc2.DatasetView.schema.json | 18 ++++++------------ 1 file changed, 6 insertions(+), 12 deletions(-) diff --git a/json_schemas/mc2.DatasetView.schema.json b/json_schemas/mc2.DatasetView.schema.json index 5802506d..7088d3b2 100644 --- a/json_schemas/mc2.DatasetView.schema.json +++ b/json_schemas/mc2.DatasetView.schema.json @@ -105,8 +105,7 @@ "SVS", "" ] - }, - "maxItems": 80 + } }, "Dataset Design": { "type": "string", @@ -155,8 +154,7 @@ "GRU", "" ] - }, - "maxItems": 24 + } }, "Dataset Alias": { "type": "string", @@ -562,8 +560,7 @@ "Binding Assay", "Synthetic Genetic Array" ] - }, - "maxItems": 379 + } }, "Dataset Description": { "type": "string", @@ -615,8 +612,7 @@ "Zebrafish", "African Bush Elephant" ] - }, - "maxItems": 28 + } }, "Dataset Tumor Type": { "type": "array", @@ -812,8 +808,7 @@ "Malignant Brain Neoplasm", "" ] - }, - "maxItems": 186 + } }, "Dataset Tissue": { "type": "array", @@ -937,8 +932,7 @@ "Sclera", "" ] - }, - "maxItems": 114 + } }, "Component": { "type": "string", From de0d636fe4b25463ae1889326de4ea5e0b2ba19b Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 27 Feb 2025 11:14:12 -0500 Subject: [PATCH 017/106] Update annotationProperty.csv Adjust File Longitudinal Event Type description to better describe intent of attribute --- modules/file/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index ff93a75b..84997264 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -10,7 +10,7 @@ File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str +File Longitudinal Event Type,"The type of event to which File Longitudinal Total Time Elapsed is related","Enrollment, Baseline",,FALSE,,,,,str File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num From 7f282f21c00bc3967d23df1c526d1b84667e47f6 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 27 Feb 2025 11:16:36 -0500 Subject: [PATCH 018/106] Add DataCatalog attributes and model Added Data Catalog attributes, descriptions, and model definition. Descriptions contain notes on equivalent annotations in other MC2 data model components --- modules/dataCatalog/annotationProperty.csv | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 modules/dataCatalog/annotationProperty.csv diff --git a/modules/dataCatalog/annotationProperty.csv b/modules/dataCatalog/annotationProperty.csv new file mode 100644 index 00000000..cc9da1eb --- /dev/null +++ b/modules/dataCatalog/annotationProperty.csv @@ -0,0 +1,10 @@ +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +community,The Sage Bionetworks project or initiative with which the dataset is associated.,,,FALSE,,,,Synapse Data Catalog,str +description,A text description of the dataset. Can be identifical to Dataset Description.,,,FALSE,,,,Synapse Data Catalog,str +contributors,The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.,,,FALSE,,,,Synapse Data Catalog,list like +keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,FALSE,,,,Synapse Data Catalog,list like +individuals,"The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples",,,FALSE,,,,Synapse Data Catalog,int +link,"The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.",,,FALSE,,,,Synapse Data Catalog,url +croissant,A Synapse url where the croissant file associated with this dataset is stored.,,,FALSE,,,,Synapse Data Catalog,url +DataCatalog,The manifest used to describe datasets for the Synapse Data Catalog.,,"Component, DataCatalog_id, community, description, contributors, keywords, individuals, link, croissant",FALSE,,,Study,Synapse Data Catalog, +DataCatalog_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,MC2,unique From 373f1ac4179115900ba10cfd43589865d902050d Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 3 Mar 2025 17:26:02 -0800 Subject: [PATCH 019/106] Update annotationProperty.csv Add Grant End Date as attribute and include in Grant View model --- modules/grant/annotationProperty.csv | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index 000dafb7..d9c2e4df 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -3,7 +3,7 @@ Grant Name,Name of the grant,,,TRUE,,,,, Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ Grant Abstract,Abstract for the grant,,,TRUE,,,,, Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, -Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, +Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, Grant End Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like @@ -16,3 +16,4 @@ Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date +Grant End Date,The end date of the grant YYYY-MM-DD format,,,TRUE,,,,,date From aa2aa9039b1e4d102e979036cd7a0cbbabb89320 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 3 Mar 2025 17:26:09 -0800 Subject: [PATCH 020/106] Update mc2.duoCodeAR.schema.json --- json_schemas/mc2.duoCodeAR.schema.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schemas/mc2.duoCodeAR.schema.json b/json_schemas/mc2.duoCodeAR.schema.json index 25d747e0..b0d1ad28 100644 --- a/json_schemas/mc2.duoCodeAR.schema.json +++ b/json_schemas/mc2.duoCodeAR.schema.json @@ -2,7 +2,7 @@ "$schema": "http://json-schema.org/draft-07/schema", "title": "MC2 Example AR-DUO schema", "$id": "MC2-Infrastructure-Design-AR-DUO.1.0", - "description": "This examlpe schema defines how DUO should be used for MC2 Center Synapse projects.", + "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", "allOf": [ { "if": { From cb0dd8ab3f50348c96bf4f99a403ce90496effe4 Mon Sep 17 00:00:00 2001 From: aditya-nath-sage Date: Tue, 4 Mar 2025 13:46:04 -0800 Subject: [PATCH 021/106] Added 3D ATAC-PALM assay to assay.csv (#144) * Added 3D ATAC-PALM assay to assay.csv --------- Co-authored-by: mc2center-bot[bot] Co-authored-by: Orion Banks <49208907+Bankso@users.noreply.github.com> --- modules/shared/assay.csv | 1 + 1 file changed, 1 insertion(+) diff --git a/modules/shared/assay.csv b/modules/shared/assay.csv index 5d6f3559..89cfe56c 100644 --- a/modules/shared/assay.csv +++ b/modules/shared/assay.csv @@ -4,6 +4,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsO 3' RNA-seq,"A molecular genetic technique that combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to map the binding sites of DNA-associated proteins in a sample of cells. First, crosslinked protein-DNA complexes are isolated using ChIP. Next, the crosslinks are broken, the proteins are removed and the purified DNA is modified with adaptor oligonucleotides to facilitate massively parallel DNA sequencing. Following sequencing, the DNA sequences that are obtained can be mapped to their genomic locations.",,,FALSE,,Assay,,,,,,,, 3C,,,,FALSE,,Assay,,EFO,,"3c, Chromosome Conformation NG Capture-C Assay, Chromosome Conformation Capture Assay",EFO:0007689,https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fwww.ebi.ac.uk%2Fefo%2FEFO_0007689,, 3C-qPCR,,,,FALSE,,Assay,,,,"Quantitative analysis of chromosome conformation capture assays, 3c-qpcr",,,,Not in any ontologies or NCIt +3D ATAC-PALM,,,,FALSE,,Assay,,,,,,,,AN 2024-09-20 3D Bioprinting,,,,FALSE,,Assay,,PubMed,,,PMID:26724184,https://pubmed.ncbi.nlm.nih.gov/26724184/,,Added by Brynn 09/23/2022 3D Cell Culture,,,,FALSE,,Assay,,,,"3d cell culture, 3D culture, 3D cell culture",,,, 4C,,,,FALSE,,Assay,,EFO,,"4C, 4c",EFO:0007690,http://www.ebi.ac.uk/efo/EFO_0007690,, From 109382d4f824f60d7fb1ef31e8b97ad885d31a91 Mon Sep 17 00:00:00 2001 From: aditya-nath-sage Date: Tue, 4 Mar 2025 13:46:22 -0800 Subject: [PATCH 022/106] Update institution_name.csv (#175) * Update institution_name.csv Added Institutions for grantView annotation * Update institution_alias.csv --- modules/institution/institution_alias.csv | 7 ++++++- modules/institution/institution_name.csv | 7 ++++++- 2 files changed, 12 insertions(+), 2 deletions(-) diff --git a/modules/institution/institution_alias.csv b/modules/institution/institution_alias.csv index c16f758e..2b5de001 100644 --- a/modules/institution/institution_alias.csv +++ b/modules/institution/institution_alias.csv @@ -1,9 +1,11 @@ ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +AECM,,,,FALSE,,Institution Alias,,,,,,,, ASU,,,,FALSE,,Institution Alias,,,,,,,, AU,,,,FALSE,,Institution Alias,,,,,,,, BCM,,,,FALSE,,Institution Alias,,,,,,,, BIDMC,,,,FALSE,,Institution Alias,,,,,,,, BMC,,,,FALSE,,Institution Alias,,,,,,,, +BRI,,,,FALSE,,Institution Alias,,,,,,,, BU,,,,FALSE,,Institution Alias,,,,,,,, BWH,,,,FALSE,,Institution Alias,,,,,,,, Barrow,,,,FALSE,,Institution Alias,,,,,,,, @@ -11,6 +13,7 @@ CHOP,,,,FALSE,,Institution Alias,,,,,,,, COH,,,,FALSE,,Institution Alias,,,,,,,, CSHL,,,,FALSE,,Institution Alias,,,,,,,, Caltech,,,,FALSE,,Institution Alias,,,,,,,, +Clemson,,,,FALSE,,Institution Alias,,,,,,,, Cleveland Clinic,,,,FALSE,,Institution Alias,,,,,,,, Columbia,,,,FALSE,,Institution Alias,,,,,,,, Cornell,,,,FALSE,,Institution Alias,,,,,,,, @@ -40,6 +43,7 @@ NYU,,,,FALSE,,Institution Alias,,,,,,,, OHSU,,,,FALSE,,Institution Alias,,,,,,,, PNNL,,,,FALSE,,Institution Alias,,,,,,,, Pitt,,,,FALSE,,Institution Alias,,,,,,,, +Purdue,,,,FALSE,,Institution Alias,,,,,,,, Rockefeller University,,,,FALSE,,Institution Alias,,,,,,,, SBU,,,,FALSE,,Institution Alias,,,,,,,, Sage,,,,FALSE,,Institution Alias,,,,,,,, @@ -48,6 +52,7 @@ StJude,,,,FALSE,,Institution Alias,,,,,,,, Stanford,,,,FALSE,,Institution Alias,,,,,,,, U Miami,,,,FALSE,,Institution Alias,,,,,,,, UA,,,,FALSE,,Institution Alias,,,,,,,, +UARK,,,,FALSE,,Institution Alias,,,,,,,, UAB,,,,FALSE,,Institution Alias,,,,,,,, UCBerkeley,,,,FALSE,,Institution Alias,,,,,,,, UCD,,,,FALSE,,Institution Alias,,,,,,,, @@ -82,4 +87,4 @@ WUSTL,,,,FALSE,,Institution Alias,,,,,,,, WCM,,,,FALSE,,Institution Alias,,,,,,,, Wake Forest,,,,FALSE,,Institution Alias,,,,,,,, Wistar,,,,FALSE,,Institution Alias,,,,,,,, -Yale,,,,FALSE,,Institution Alias,,,,,,,, \ No newline at end of file +Yale,,,,FALSE,,Institution Alias,,,,,,,, diff --git a/modules/institution/institution_name.csv b/modules/institution/institution_name.csv index 95a59f43..10649b59 100644 --- a/modules/institution/institution_name.csv +++ b/modules/institution/institution_name.csv @@ -1,8 +1,10 @@ ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +Albert Einstein College of Medicine,,,,FALSE,,Institution Name,,,,,,,, Arizona State University,,,,FALSE,,Institution Name,,,,,,,, Auburn University,,,,FALSE,,Institution Name,,,,,,,, Barrow Neurological Institute,,,,FALSE,,Institution Name,,,,,,,, Baylor College Of Medicine,,,,FALSE,,Institution Name,,,,,,,, +Beckman Research Institute of City of Hope,,,,FALSE,,Institution Name,,,,,,,, Beth Israel Deaconess Hospital,,,,FALSE,,Institution Name,,,,,,,, Boston Medical Center,,,,FALSE,,Institution Name,,,,,,,, Boston University,,,,FALSE,,Institution Name,,,,,,,, @@ -10,6 +12,7 @@ Brigham and Womens Hospital,,,,FALSE,,Institution Name,,,,,,,, California Institute of Technology,,,,FALSE,,Institution Name,,,,,,,, Childrens Hospital of Philadelphia,,,,FALSE,,Institution Name,,,,,,,, City Of Hope,,,,FALSE,,Institution Name,,,,,,,, +Clemson University,,,,FALSE,,Institution Name,,,,,,,, Cleveland Clinic,,,,FALSE,,Institution Name,,,,,,,, Cold Spring Harbor Laboratory,,,,FALSE,,Institution Name,,,,,,,, Columbia University,,,,FALSE,,Institution Name,,,,,,,, @@ -39,6 +42,7 @@ New York University,,,,FALSE,,Institution Name,,,,,,,, Northwestern University,,,,FALSE,,Institution Name,,,,,,,, Oregon Health & Science University,,,,FALSE,,Institution Name,,,,,,,, Pacific Northwest National Laboratory,,,,FALSE,,Institution Name,,,,,,,, +Purdue University,,,,FALSE,,Institution Name,,,,,,,, Rockefeller University,,,,FALSE,,Institution Name,,,,,,,, Sage Bionetworks,,,,FALSE,,Institution Name,,,,,,,, Salk Institute for Biological Studies,,,,FALSE,,Institution Name,,,,,,,, @@ -48,6 +52,7 @@ Stony Brook University,,,,FALSE,,Institution Name,,,,,,,, The University of Texas Health Science Center at San Antonio,,,,FALSE,,Institution Name,,,,,,,, University of Alabama at Birmingham,,,,FALSE,,Institution Name,,,,,,,, University of Arizona,,,,FALSE,,Institution Name,,,,,,,, +University of Arkansas at Fayetteville,,,,FALSE,,Institution Name,,,,,,,, University of California; Berkeley,,,,FALSE,,Institution Name,,,,,,,, University of California; Irvine,,,,FALSE,,Institution Name,,,,,,,, University of California; Los Angeles,,,,FALSE,,Institution Name,,,,,,,, @@ -82,4 +87,4 @@ Washington University in St. Louis,,,,FALSE,,Institution Name,,,,,,,, Wake Forest,,,,FALSE,,Institution Name,,,,,,,, Weill Cornell Medicine,,,,FALSE,,Institution Name,,,,,,,, Wistar Institute,,,,FALSE,,Institution Name,,,,,,,, -Yale University,,,,FALSE,,Institution Name,,,,,,,, \ No newline at end of file +Yale University,,,,FALSE,,Institution Name,,,,,,,, From 866666e01f6e02eba794564e8f13a3141e318ef2 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 4 Mar 2025 14:06:11 -0800 Subject: [PATCH 023/106] Build updated model update valid values, collate CSVs, generate JSON-LD (schematic 24.12.1) --- all_valid_values.csv | 11 + mc2.model.csv | 12 +- mc2.model.jsonld | 238 ++++++++++++++++++++ modules/dataset/annotationProperty.csv | 2 +- modules/file/annotationProperty.csv | 2 +- modules/grant/annotationProperty.csv | 4 +- modules/publication/annotationProperty.csv | 2 +- modules/sharingPlans/annotationProperty.csv | 2 +- 8 files changed, 261 insertions(+), 12 deletions(-) diff --git a/all_valid_values.csv b/all_valid_values.csv index d63bd600..47dfe52a 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -8161,6 +8161,7 @@ assay,16S Ribosomal Gene Sequencing Assay,"16s ribosomal gene sequencing assay, assay,3' RNA-seq, assay,3C,"3c, Chromosome Conformation NG Capture-C Assay, Chromosome Conformation Capture Assay" assay,3C-qPCR,"Quantitative analysis of chromosome conformation capture assays, 3c-qpcr" +assay,3D ATAC-PALM, assay,3D Bioprinting, assay,3D Cell Culture,"3d cell culture, 3D culture, 3D cell culture" assay,4C,"4C, 4c" @@ -9845,11 +9846,13 @@ grant_type,R37, grant_type,U01, grant_type,U24, grant_type,U54, +institution_alias,AECM, institution_alias,ASU, institution_alias,AU, institution_alias,BCM, institution_alias,BIDMC, institution_alias,BMC, +institution_alias,BRI, institution_alias,BU, institution_alias,BWH, institution_alias,Barrow, @@ -9857,6 +9860,7 @@ institution_alias,CHOP, institution_alias,COH, institution_alias,CSHL, institution_alias,Caltech, +institution_alias,Clemson, institution_alias,Cleveland Clinic, institution_alias,Columbia, institution_alias,Cornell, @@ -9886,6 +9890,7 @@ institution_alias,NYU, institution_alias,OHSU, institution_alias,PNNL, institution_alias,Pitt, +institution_alias,Purdue, institution_alias,Rockefeller University, institution_alias,SBU, institution_alias,Sage, @@ -9894,6 +9899,7 @@ institution_alias,StJude, institution_alias,Stanford, institution_alias,U Miami, institution_alias,UA, +institution_alias,UARK, institution_alias,UAB, institution_alias,UCBerkeley, institution_alias,UCD, @@ -9929,10 +9935,12 @@ institution_alias,WCM, institution_alias,Wake Forest, institution_alias,Wistar, institution_alias,Yale, +institution_name,Albert Einstein College of Medicine, institution_name,Arizona State University, institution_name,Auburn University, institution_name,Barrow Neurological Institute, institution_name,Baylor College Of Medicine, +institution_name,Beckman Research Institute of City of Hope, institution_name,Beth Israel Deaconess Hospital, institution_name,Boston Medical Center, institution_name,Boston University, @@ -9940,6 +9948,7 @@ institution_name,Brigham and Womens Hospital, institution_name,California Institute of Technology, institution_name,Childrens Hospital of Philadelphia, institution_name,City Of Hope, +institution_name,Clemson University, institution_name,Cleveland Clinic, institution_name,Cold Spring Harbor Laboratory, institution_name,Columbia University, @@ -9969,6 +9978,7 @@ institution_name,New York University, institution_name,Northwestern University, institution_name,Oregon Health & Science University, institution_name,Pacific Northwest National Laboratory, +institution_name,Purdue University, institution_name,Rockefeller University, institution_name,Sage Bionetworks, institution_name,Salk Institute for Biological Studies, @@ -9978,6 +9988,7 @@ institution_name,Stony Brook University, institution_name,The University of Texas Health Science Center at San Antonio, institution_name,University of Alabama at Birmingham, institution_name,University of Arizona, +institution_name,University of Arkansas at Fayetteville, institution_name,University of California; Berkeley, institution_name,University of California; Irvine, institution_name,University of California; Los Angeles, diff --git a/mc2.model.csv b/mc2.model.csv index 4375e766..c26899da 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -56,7 +56,7 @@ Dataset Description,Description of the dataset.,,,FALSE,,,,, Dataset Design,The overall design of the dataset.,,,FALSE,,,,, Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like @@ -93,7 +93,7 @@ EducationalResource_id,A unique primary key that enables record updates using sc File Description,Description of the file.,,,FALSE,,,,,str File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, +File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like @@ -158,8 +158,8 @@ Grant Abstract,Abstract for the grant,,,TRUE,,,,, Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Albert Einstein College of Medicine, Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beckman Research Institute of City of Hope, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Clemson University, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Purdue University, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of Arkansas at Fayetteville, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"AECM, ASU, AU, BCM, BIDMC, BMC, BRI, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Clemson, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Purdue, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UARK, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique @@ -341,7 +341,7 @@ Publication Year,Year of the publication,,,TRUE,,,,, Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like Publication Abstract,The abstract of the publication.,,,TRUE,,,,, -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, @@ -435,7 +435,7 @@ Genome Annotation URL,Link to the human genome annotation (GTF) file; ftp or ref DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like diff --git a/mc2.model.jsonld b/mc2.model.jsonld index a7e81250..5c1b8dd5 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -201384,6 +201384,9 @@ { "@id": "bts:3C-qPCR" }, + { + "@id": "bts:3DATAC-PALM" + }, { "@id": "bts:3DBioprinting" }, @@ -202643,6 +202646,32 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:3DATAC-PALM", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "3DATAC-PALM", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "3D ATAC-PALM", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:3DBioprinting", "@type": "rdfs:Class", @@ -241068,6 +241097,9 @@ { "@id": "bts:3C-qPCR" }, + { + "@id": "bts:3DATAC-PALM" + }, { "@id": "bts:3DBioprinting" }, @@ -251628,6 +251660,9 @@ "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ + { + "@id": "bts:AlbertEinsteinCollegeofMedicine" + }, { "@id": "bts:ArizonaStateUniversity" }, @@ -251640,6 +251675,9 @@ { "@id": "bts:BaylorCollegeOfMedicine" }, + { + "@id": "bts:BeckmanResearchInstituteofCityofHope" + }, { "@id": "bts:BethIsraelDeaconessHospital" }, @@ -251661,6 +251699,9 @@ { "@id": "bts:CityOfHope" }, + { + "@id": "bts:ClemsonUniversity" + }, { "@id": "bts:ClevelandClinic" }, @@ -251748,6 +251789,9 @@ { "@id": "bts:PacificNorthwestNationalLaboratory" }, + { + "@id": "bts:PurdueUniversity" + }, { "@id": "bts:RockefellerUniversity" }, @@ -251775,6 +251819,9 @@ { "@id": "bts:UniversityofArizona" }, + { + "@id": "bts:UniversityofArkansasatFayetteville" + }, { "@id": "bts:UniversityofCalifornia;Berkeley" }, @@ -251901,6 +251948,9 @@ "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ + { + "@id": "bts:AECM" + }, { "@id": "bts:ASU" }, @@ -251916,6 +251966,9 @@ { "@id": "bts:BMC" }, + { + "@id": "bts:BRI" + }, { "@id": "bts:BU" }, @@ -251937,6 +251990,9 @@ { "@id": "bts:Caltech" }, + { + "@id": "bts:Clemson" + }, { "@id": "bts:ClevelandClinic" }, @@ -252024,6 +252080,9 @@ { "@id": "bts:Pitt" }, + { + "@id": "bts:Purdue" + }, { "@id": "bts:RockefellerUniversity" }, @@ -252048,6 +252107,9 @@ { "@id": "bts:UA" }, + { + "@id": "bts:UARK" + }, { "@id": "bts:UAB" }, @@ -252345,6 +252407,23 @@ "url" ] }, + { + "@id": "bts:AlbertEinsteinCollegeofMedicine", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AlbertEinsteinCollegeofMedicine", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Albert Einstein College of Medicine", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:ArizonaStateUniversity", "@type": "rdfs:Class", @@ -252413,6 +252492,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:BeckmanResearchInstituteofCityofHope", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BeckmanResearchInstituteofCityofHope", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Beckman Research Institute of City of Hope", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:BethIsraelDeaconessHospital", "@type": "rdfs:Class", @@ -252532,6 +252628,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:ClemsonUniversity", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ClemsonUniversity", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Clemson University", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:ClevelandClinic", "@type": "rdfs:Class", @@ -253037,6 +253150,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:PurdueUniversity", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PurdueUniversity", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Purdue University", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:RockefellerUniversity", "@type": "rdfs:Class", @@ -253202,6 +253332,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:UniversityofArkansasatFayetteville", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UniversityofArkansasatFayetteville", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "University of Arkansas at Fayetteville", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:UniversityofCalifornia;Berkeley", "@type": "rdfs:Class", @@ -253806,6 +253953,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:AECM", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AECM", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AECM", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:ASU", "@type": "rdfs:Class", @@ -253891,6 +254055,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:BRI", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BRI", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BRI", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:BU", "@type": "rdfs:Class", @@ -254010,6 +254191,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:Clemson", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Clemson", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Clemson", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Columbia", "@type": "rdfs:Class", @@ -254418,6 +254616,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:Purdue", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Purdue", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Purdue", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:SBU", "@type": "rdfs:Class", @@ -254537,6 +254752,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:UARK", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UARK", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "UARK", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:UAB", "@type": "rdfs:Class", @@ -304182,6 +304414,9 @@ { "@id": "bts:3C-qPCR" }, + { + "@id": "bts:3DATAC-PALM" + }, { "@id": "bts:3DBioprinting" }, @@ -312355,6 +312590,9 @@ { "@id": "bts:3C-qPCR" }, + { + "@id": "bts:3DATAC-PALM" + }, { "@id": "bts:3DBioprinting" }, diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index ca17b13a..66fa6dbd 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -5,7 +5,7 @@ Dataset Description,Description of the dataset.,,,FALSE,,,,, Dataset Design,The overall design of the dataset.,,,FALSE,,,,, Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index ff93a75b..70c8a9c3 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -2,7 +2,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsO File Description,Description of the file.,,,FALSE,,,,,str File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, +File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index 000dafb7..9edff921 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -5,8 +5,8 @@ Grant Abstract,Abstract for the grant,,,TRUE,,,,, Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Albert Einstein College of Medicine, Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beckman Research Institute of City of Hope, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Clemson University, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Purdue University, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of Arkansas at Fayetteville, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"AECM, ASU, AU, BCM, BIDMC, BMC, BRI, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Clemson, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Purdue, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UARK, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index 7f082411..85b12f5d 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -8,7 +8,7 @@ Publication Year,Year of the publication,,,TRUE,,,,, Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like Publication Abstract,The abstract of the publication.,,,TRUE,,,,, -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index c7693942..55e6e959 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -2,7 +2,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsO DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like From 691193cda162ba3e661ac2e4ccf78563adc6e6f1 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 4 Mar 2025 15:58:51 -0800 Subject: [PATCH 024/106] Create mc2_assay_icon_tag_map_3-4-25.csv Add mapping of assay annotations to portal icon tags for the CCKP --- .../shared/mc2_assay_icon_tag_map_3-4-25.csv | 381 ++++++++++++++++++ 1 file changed, 381 insertions(+) create mode 100644 modules/shared/mc2_assay_icon_tag_map_3-4-25.csv diff --git a/modules/shared/mc2_assay_icon_tag_map_3-4-25.csv b/modules/shared/mc2_assay_icon_tag_map_3-4-25.csv new file mode 100644 index 00000000..10d25bd4 --- /dev/null +++ b/modules/shared/mc2_assay_icon_tag_map_3-4-25.csv @@ -0,0 +1,381 @@ +assay,label,Secondary Labels,Term Type,Notes +Western Blotting,bioChemicalPhysical,,"Method, Data", +ELISA,bioChemicalPhysical,,"Method, Data", +Migration Assay,bioChemicalPhysical,,"Method, Data", +Cell Proliferation Assay,bioChemicalPhysical,,"Method, Data", +Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Colorimetric Cell Viability Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", +Immunoprecipitation,bioChemicalPhysical,,Method, +Invasion Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", +Rheometry,bioChemicalPhysical,Cell Profiling,"Method, Data", +Apoptosis Assay,bioChemicalPhysical,,"Method, Data", +Luciferase Reporter Assay,bioChemicalPhysical,,"Method, Data", +Nuclear Magnetic Resonance,bioChemicalPhysical,,"Method, Data", +Co-Immunoprecipitation,bioChemicalPhysical,,Method, +Cytotoxicity Assay,bioChemicalPhysical,,"Method, Data", +Transwell Assay,bioChemicalPhysical,,"Method, Data", +High Throughput Screening,bioChemicalPhysical,,Method, +Enzyme Activity Assay,bioChemicalPhysical,,"Method, Data", +Traction Force Microscopy,bioChemicalPhysical,Microscopy,"Method, Data", +Binding Assay,bioChemicalPhysical,,"Method, Data", +Proximity Ligation Assay,bioChemicalPhysical,,"Method, Data", +X-Ray Crystallography,bioChemicalPhysical,,"Method, Data", +Pull-Down Assay,bioChemicalPhysical,,"Method, Data", +Co-culture Assay,bioChemicalPhysical,,"Method, Data", +Cryo-Electron Microscopy,bioChemicalPhysical,Structure Determination,"Method, Data", +Dynamic Light Scattering,bioChemicalPhysical,,Method, +Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Magnetic Tweezers,bioChemicalPhysical,,Method, +Phagocytosis Assay,bioChemicalPhysical,,"Method, Data", +Size Exclusion Chromatography,bioChemicalPhysical,,"Method, Data", +Soft Agar Assay,bioChemicalPhysical,,"Method, Data", +Fluorescence Correlation Spectroscopy,bioChemicalPhysical,,"Method, Data", +Forster Resonance Energy Transfer,bioChemicalPhysical,,"Method, Data", +Cell Adhesion Assay,bioChemicalPhysical,,"Method, Data", +In Vivo Bioluminescence,bioChemicalPhysical,,"Method, Data", +CellTiter-Glo Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Fluorescence Recovery After Photo-Bleaching,bioChemicalPhysical,,"Method, Data", +Fourier-Transform Infrared Spectroscopy,bioChemicalPhysical,,"Method, Data", +In Vitro Cell Killing Assay,bioChemicalPhysical,,"Method, Data", +Permeability Assay,bioChemicalPhysical,,"Method, Data", +Raman Spectroscopy,bioChemicalPhysical,,"Method, Data", +Partial Wave Spectroscopy,bioChemicalPhysical,,"Method, Data", +Single Cell Gel Electrophoresis,bioChemicalPhysical,,"Method, Data", +Surface Plasmon Resonance,bioChemicalPhysical,,"Method, Data", +Enzyme-Linked Immunospot Assay,bioChemicalPhysical,,"Method, Data", +Small-Angle X-ray Scattering,bioChemicalPhysical,,"Method, Data", +Cell Cycle Assay,bioChemicalPhysical,,"Method, Data", +Chemotaxis Assay,bioChemicalPhysical,,"Method, Data", +Electrophoretic Mobility Shift Assay,bioChemicalPhysical,,"Method, Data", +Fluorescent Cell Barcoding,bioChemicalPhysical,,Method, +Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,bioChemicalPhysical,,"Method, Data", +Antitumor Drug Screening Assay,bioChemicalPhysical,,"Method, Data", +Atomic Absorption Spectrophotometry,bioChemicalPhysical,,"Method, Data", +ATP Bioluminescence Assay,bioChemicalPhysical,,"Method, Data", +Bio-Layer Interferometry,bioChemicalPhysical,,"Method, Data", +Dye Endocytosis Assay,bioChemicalPhysical,,"Method, Data", +Electron Paramagnetic Resonance Spectroscopy,bioChemicalPhysical,,"Method, Data", +MULTI-Seq,bioChemicalPhysical,,"Method, Data", +Reverse-Phase High-Performance liquid Chromatography,bioChemicalPhysical,,"Method, Data", +Single Molecule Forster Resonance Energy Transfer,bioChemicalPhysical,,Method, +Stimulated Raman Scattering,bioChemicalPhysical,,"Method, Data", +Survival Analysis,bioChemicalPhysical,,"Method, Data", +Thermal Shift Assay,bioChemicalPhysical,,"Method, Data", +Wound-Healing Assay,bioChemicalPhysical,,"Method, Data", +Angiogenesis Assay,bioChemicalPhysical,,"Method, Data", +Atomic Absorption Spectroscopy,bioChemicalPhysical,,"Method, Data", +Circular Dichroism Spectroscopy,bioChemicalPhysical,,"Method, Data", +Differential Scanning Fluorimetry,bioChemicalPhysical,,"Method, Data", +Dynamic Force Spectroscopy,bioChemicalPhysical,,"Method, Data", +Mammosphere Formation Assay,bioChemicalPhysical,,"Method, Data", +MEMA Cell Growth Assay,bioChemicalPhysical,,"Method, Data", +Micropipette Adhesion Assay,bioChemicalPhysical,,"Method, Data", +Optical Emission Spectroscopy,bioChemicalPhysical,,"Method, Data", +Optogenetic Assay,bioChemicalPhysical,,"Method, Data", +RAS Protein Family Activation Assay,bioChemicalPhysical,,"Method, Data", +Suspended Microchannel Resonator,bioChemicalPhysical,,Method, +Bioelectrochemical Analysis,bioChemicalPhysical,,"Method, Data", +Cell Fractionation,bioChemicalPhysical,,Method, +Cell-spreading Assay,bioChemicalPhysical,,"Method, Data", +Chemiluminescent Assay,bioChemicalPhysical,,"Method, Data", +Clonality Analysis,bioChemicalPhysical,,"Method, Data", +Cytometric Bead Array Assay,bioChemicalPhysical,,"Method, Data", +Efferocytosis Assay,bioChemicalPhysical,,"Method, Data", +Electron Diffraction,bioChemicalPhysical,,Method, +Endotoxin Assay,bioChemicalPhysical,,"Method, Data", +Energy-Dispersive X-Ray Spectroscopy,bioChemicalPhysical,,"Method, Data", +Gelatin Zymography,bioChemicalPhysical,,"Method, Data", +Graphite Furnace Atomic Absorption Spectrometry,bioChemicalPhysical,,"Method, Data", +Hydrophilic Interaction Chromatography,bioChemicalPhysical,,"Method, Data", +In Vitro Translation,bioChemicalPhysical,,Method, +In-Cell Western Assay,bioChemicalPhysical,,"Method, Data", +Isothermal Titration Calorimetry,bioChemicalPhysical,,"Method, Data", +Macrophage Polarization Assay,bioChemicalPhysical,,"Method, Data", +Metastatic Colonization Assay,bioChemicalPhysical,,"Method, Data", +Microcontact Printing,bioChemicalPhysical,,Method, +Multi-Angle Light Scattering,bioChemicalPhysical,,"Method, Data", +Paraquat Survival Assay,bioChemicalPhysical,,"Method, Data", +Photolithography,bioChemicalPhysical,,Method, +Scratch Assay,bioChemicalPhysical,,"Method, Data", +SDS-PAGE,bioChemicalPhysical,,"Method, Data", +Single Cell Cytokine Detection Chip Assay,bioChemicalPhysical,,"Method, Data", +Single-Cell Barcode Chip,bioChemicalPhysical,,"Method, Data", +Surveyor Nuclease Assay,bioChemicalPhysical,,"Method, Data", +Target Engagement Assay,bioChemicalPhysical,,"Method, Data", +Thin-Layer Chromatography,bioChemicalPhysical,,"Method, Data", +Time-Correlated Single Photon Counting,bioChemicalPhysical,,"Method, Data", +UV Photocrosslinking,bioChemicalPhysical,,Method, +Vibrational Spectroscopy,bioChemicalPhysical,,"Method, Data", +X-Ray Diffraction,bioChemicalPhysical,,Method, +Spectroscopy,bioChemicalPhysical,,Method,Not sure how to label this one +Immobilized Metal Affinity Chromatography,bioChemicalPhysical,,Method, +Magnetic Resonance Imaging,clinical,Imaging,"Method, Data", +Computed Tomography,clinical,Imaging,"Method, Data", +Transmission Electron Microscopy,clinical,Imaging,"Method, Data", +Immunotherapy,clinical,,Method,Not sure about this one +Positron Emission Tomography,clinical,Imaging,"Method, Data", +Clinical Study,clinical,,"Method, Data", +PET-CT,clinical,,"Method, Data", +Dynamic Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", +Micro-computed Tomography,clinical,,"Method, Data", +Optical Coherence Tomography,clinical,,"Method, Data", +Questionnaire,clinical,,Method, +Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", +Epidemiological Method,clinical,,Method, +Multiplexed Ion Beam Imaging,clinical,,"Method, Data", +Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", +Ultrasound Imaging,clinical,,"Method, Data", +X-Ray Micro-Computed Tomography,clinical,,"Method, Data", +Cryo-Electron Tomography,clinical,,"Method, Data", +Quantitative Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", +Computational Tool,computationalTool,"In silico, Data Analysis",Method, +Data Integration,dataReuse,,Method,This typically indicates that the resource included secondary analysis/integration of publicly available data +ChIP-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +ATAC-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, DNA Accessibility","Method, Data", +Hi-C,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Chromatin Conformation","Method, Data", +DNA Methylation Array,epigenomeProfiling,"Microarray, Methylation","Method, Data", +Single Cell ATAC-Seq,epigenomeProfiling,"Sequencing, Single-cell, Epigenome, DNA Accessibility","Method, Data", +Bisulfite Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Methylation","Method, Data", +ChIP-qPCR assay,epigenomeProfiling,"PCR, Bulk, DNA, Epigenome, Protein Localization","Method, Data", +CUT&RUN,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +CUT&Tag-Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +Reduced Representation Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", +3C,epigenomeProfiling,,"Method, Data", +ChIP-PCR,epigenomeProfiling,,"Method, Data", +MNase-Seq,epigenomeProfiling,,"Method, Data", +5C,epigenomeProfiling,,"Method, Data", +ChIA-PET,epigenomeProfiling,,"Method, Data", +HiChIP,epigenomeProfiling,,"Method, Data", +Methyl Binding Domain Sequencing,epigenomeProfiling,,"Method, Data", +Whole Genome Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", +3C-qPCR,epigenomeProfiling,,"Method, Data", +4C,epigenomeProfiling,,"Method, Data", +Cross-Linking Immunoprecipitation High-throughput Sequencing,epigenomeProfiling,,"Method, Data", +eCLIP-Seq,epigenomeProfiling,,"Method, Data", +CLIP-qPCR,epigenomeProfiling,,"Method, Data", +Global Chromatin Profiling,epigenomeProfiling,,"Method, Data", +HL-Chip,epigenomeProfiling,,"Method, Data", +Methylation-Specific PCR,epigenomeProfiling,,Method, +Mint-ChIP,epigenomeProfiling,,"Method, Data", +RNA Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", +Single Cell RNA-Sequencing,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", +RT-qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +DNA Gene-Expression Microarray,expressionProfiling,Microarray,"Method, Data", +RT-PCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +Targeted Transcriptome Sequencing,expressionProfiling,"Sequencing, Targeted, RNA","Method, Data", +Global Run-On Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", +cDNA Array,expressionProfiling,"Microarray, cDNA",Method, +snRNA-seq,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", +MicroRNA Sequencing,expressionProfiling,,"Method, Data", +mRNA Sequencing,expressionProfiling,,"Method, Data", +Gene Set Enrichment Analysis,expressionProfiling,,"Method, Data", +Single-Cell TCR Sequencing,expressionProfiling,,"Method, Data", +Droplet Digital PCR,expressionProfiling,,"Method, Data", +MicroRNA Expression Array,expressionProfiling,,"Method, Data", +10-cell RNA Sequencing,expressionProfiling,,"Method, Data", +3' RNA-seq,expressionProfiling,,"Method, Data", +smFISH,expressionProfiling,,"Method, Data", +smRNA-seq,expressionProfiling,,"Method, Data", +Nm-seq,expressionProfiling,,"Method, Data", +Precision Run-On Sequencing,expressionProfiling,,"Method, Data", +Single-Cell BCR Sequencing,expressionProfiling,,"Method, Data", +Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", +PlateSeq,expressionProfiling,,"Method, Data", +Single Nucleus RNA-Sequencing,expressionProfiling,,"Method, Data", +Southern Blotting,expressionProfiling,,"Method, Data", +CASFISH,expressionProfiling,,"Method, Data", +Direct Long-Read RNA Sequencing,expressionProfiling,,"Method, Data", +L1000 mRNA Profiling Assay,expressionProfiling,,"Method, Data", +QFISH,expressionProfiling,,"Method, Data", +Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", +CITE-seq,"expressionProfiling, proteomics",,"Method, Data", +Whole Exome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +Whole Genome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +FISH,genomeProfiling,"Fluorescence, Probe-based","Method, Data", +In Situ Hybridization,genomeProfiling,"Probe-based, Targeted, Genome","Method, Data", +Targeted Genome Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +Barcode-Seq,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +DNA Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +Single Nucleotide Polymorphism Array,genomeProfiling,"Microarray, Genetic Variants","Method, Data", +16S Ribosomal Gene Sequencing Assay,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +TCR Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +Dideoxy Chain Termination DNA Sequencing,genomeProfiling,,"Method, Data", +Tissue Microarray,genomeProfiling,,Method, +ImmunoFISH,genomeProfiling,,Method, +Gene Ontology Enrichment Analysis,genomeProfiling,,"Method, Data", +Single Cell DNA Sequencing,genomeProfiling,,"Method, Data", +DRIP-seq,genomeProfiling,,"Method, Data", +Genotyping,genomeProfiling,,"Method, Data", +Tuba-Seq,genomeProfiling,,"Method, Data", +Nanopore Sequencing,genomeProfiling,,"Method, Data", +Amplicon Sequencing,genomeProfiling,,"Method, Data", +DNase-Seq,genomeProfiling,,"Method, Data", +Drop-Seq,genomeProfiling,,"Method, Data", +Structural Variant Analysis,genomeProfiling,,"Method, Data", +Cell-free Circulating Tumor DNA Assay,genomeProfiling,,"Method, Data", +Comparative Genomic Hybridization,genomeProfiling,,"Method, Data", +FAIRE-Seq,genomeProfiling,,"Method, Data", +Karyotyping,genomeProfiling,,"Method, Data", +Deep Mutational Scanning,genomeProfiling,,"Method, Data", +Imaging,imaging,Microscopy,Method, +Immunohistochemistry Staining Method,imaging,,Method, +Fluorescent Antibody Procedure,imaging,,Method, +Confocal Microscopy,imaging,"Microscopy, Confocal","Method, Data", +Microscopy,imaging,Microscopy,Method, +Fluorescence Microscopy,imaging,"Microscopy, Fluorescence","Method, Data", +Hematoxylin and Eosin Staining Method,imaging,,Method, +Time Lapse Microscopy,imaging,"Microscopy, Time-course","Method, Data", +Cyclic Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", +Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", +Bioluminescence Imaging,imaging,Microscopy,"Method, Data", +Atomic Force Microscopy,imaging,"Microscopy, Atomic Force","Method, Data", +Fluorescence Imaging,imaging,"Microscopy, Fluorescence","Method, Data", +Immunocytochemistry,imaging,,Method, +Immunofluorescent Staining Method,imaging,,Method, +Quantitative Multiplex Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", +Brightfield Microscopy,imaging,"Microscopy, Brightfield","Method, Data", +Scanning Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", +Multiphoton Microscopy,imaging,,"Method, Data", +Multiscale Light Sheet Microscopy,imaging,Microscopy,"Method, Data", +Multiplexed Immunofluorescence,imaging,,"Method, Data", +Brillouin Microscopy,imaging,,"Method, Data", +Multiplexed Immunohistochemistry,imaging,,Method, +Fluorescence Lifetime Imaging Microscopy,imaging,,"Method, Data", +TIRF Microscopy,imaging,,"Method, Data", +Widefield Fluorescence Microscopy,imaging,,"Method, Data", +Differential Interference Contrast Microscopy,imaging,,"Method, Data", +Second-Harmonic Imaging Microscopy,imaging,,"Method, Data", +Intravital Microscopy,imaging,,"Method, Data", +Single-Molecule Localization Microscopy,imaging,,"Method, Data", +Cytochemical Stain,imaging,,Method, +Super-Resolution Microscopy,imaging,,"Method, Data", +TRAP Staining,imaging,,Method, +Focused Ion Beam Scanning Electron Microscopy,imaging,,"Method, Data", +Lattice Light Sheet Microscopy,imaging,,"Method, Data", +Monolayer Stress Microscopy,imaging,,"Method, Data", +Multiparametric Magnetic Resonance Imaging,imaging,,"Method, Data", +Confocal Reflectance Quantitative Phase Microscopy,imaging,,"Method, Data", +Dark Field Microscopy,imaging,,"Method, Data", +Diffusion Weighted Imaging,imaging,,"Method, Data", +Light Sheet Microscopy,imaging,,"Method, Data", +Single-Molecule Tracking,imaging,,"Method, Data", +Sirius Red Staining,imaging,,Method, +Stimulated Emission Depletion Microscopy,imaging,,"Method, Data", +Stochastic Optical Reconstruction Microscopy,imaging,,"Method, Data", +Trichrome Staining Method,imaging,,Method, +Alcian Blue Staining Method,imaging,,Method, +Bicinchoninic Acid Assay,imaging,,"Method, Data", +Cerenkov Luminescence Imaging,imaging,,"Method, Data", +Field-Emission Scanning Electron Microscopy,imaging,,"Method, Data", +Interference Reflection Microscopy,imaging,,"Method, Data", +Knife-Edge Scanning Microscopy,imaging,,"Method, Data", +Low-Vacuum Scanning Electron Microscopy,imaging,,"Method, Data", +Picrosirius Staining,imaging,,Method, +Scanning Angle Interference Microscopy,imaging,,"Method, Data", +Total Internal Reflection Fluorescence Microscopy,imaging,,"Method, Data", +Computational Modeling,inSilicoModel,Computational,"Method, Data", +Mathematical Modeling,inSilicoModel,Mathematical,"Method, Data", +Statistical Modeling,inSilicoModel,"Mathematical, Statistics",Method, +Molecular Simulations,inSilicoModel,Simulation,"Method, Data", +Deep Learning,inSilicoModel,,Method, +Artificial Intelligence,inSilicoModel,,Method, +Murine Model,modelSystem,Murine,Method, +3D Cell Culture,modelSystem,"Cell Culture, 3D",Method, +Microfluidics,modelSystem,Microfluidics,Method, +CRISPR,modelSystem,Genome Manipulation,Method, +Hydrogels,modelSystem,"Cell Culture, 3D",Method, +Xenograft,modelSystem,,Method, +Tissue Engineering,modelSystem,,Method, +Cell Culture,modelSystem,Cell Culture,Method, +Patient Derived Xenograft,modelSystem,Patient Derived,Method, +Organoid,modelSystem,"Cell Culture, 3D",Method, +In Vitro Model,modelSystem,Cell Culture,Method, +siRNA,modelSystem,Genome Manipulation,Method, +shRNA,modelSystem,Genome Manipulation,Method, +Plasmid Construction,modelSystem,Genome Manipulation,Method,Not sure about this one +Dual-Luciferase Reporter Assay,modelSystem,Biochemical/Biophysical,"Method, Data", +Nanopatterning,modelSystem,,Method, +Reporter Gene Assay,modelSystem,,"Method, Data", +RNAi Screen,modelSystem,,Method, +Allograft,modelSystem,,Method, +Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture,modelSystem,,Method, +Chimeric Antigen Receptor T-Cell Therapy,modelSystem,,Method, +Phylogenetic Analysis,modelSystem,,"Method, Data", +Viral Transduction,modelSystem,,Method, +Synthetic Genetic Array,modelSystem,,Method, +Gene Silencing,modelSystem,,Method, +3D Bioprinting,modelSystem,,Method, +Targeted Therapy Agent,modelSystem,,Method, +Flow Cytometry,proteomics,Cell Sorting,"Method, Data", +Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +Fluorescence Activated Cell Sorting,proteomics,"Cell Profiling, Fluorescence","Method, Data", +Proteomics Assay,proteomics,,"Method, Data", +Liquid Chromatography/Tandem Mass Spectrometry,proteomics,"Mass Spectrometry, Tandem","Method, Data", +Mass Cytometry,proteomics,Cytometry,"Method, Data", +Liquid Chromatography Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +MALDI-TOF Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +Reverse Phase Protein Array,proteomics,,"Method, Data", +Affinity Purification Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +HPLC-MSMS,proteomics,Mass Spectrometry,"Method, Data", +Cytokine Expression Profile,proteomics,,Method, +Ribo-Seq,proteomics,,"Method, Data", +Gas Chromatography Mass Spectrometry,proteomics,,"Method, Data", +Tandem Mass Spectrometry,proteomics,,"Method, Data", +Image Cytometry,proteomics,,"Method, Data", +Metabolite Profiling Assay,proteomics,,"Method, Data", +Inductively-Coupled Plasma Mass Spectrometry,proteomics,,"Method, Data", +Co-Immunoprecipitation Mass Spectrometry,proteomics,,"Method, Data", +Desorption Electrospray Ionization,proteomics,,Method, +Electrospray Ionization Time-of-Flight Mass Spectrometry,proteomics,,"Method, Data", +Label-free Protein Quantification by LC/MS,proteomics,,"Method, Data", +Shotgun Mass Spectrometry,proteomics,,"Method, Data", +Cross-Linking Mass Spectrometry,proteomics,,"Method, Data", +Tandem Mass Tagging,proteomics,,Method, +UPLC-MSMS,proteomics,,"Method, Data", +Collision-Induced Dissociation,proteomics,,Method, +Multi-Isotope Mass Spectrometry,proteomics,,"Method, Data", +NanoString Digital Spatial Profiling,spatialProfiling,"Expression Profiling, Proteomics, Imaging, Probe-based, Targeted, RNA","Method, Data", +Visium Spatial Gene Expression,spatialProfiling,"Expression Profiling, Imaging, Probe-based, Targeted, RNA","Method, Data", +Multiplexed Error-Robust Fluorescence In Situ Hybridization,spatialProfiling,,"Method, Data", +Imaging Mass Cytometry,spatialProfiling,,"Method, Data", +10x Multiome,spatialProfiling,,"Method, Data", +DBiT-Seq,spatialProfiling,,"Method, Data", +Transcription profiling by NanoString,spatialProfiling,,"Method, Data", +Not Applicable,,,None, +Pending Annotation,,,None, +PCR,,,Method,Not sure how to label this one +Next Generation Sequencing,,,Method,Not sure how to label this one +Modeling,,,Method,Not sure how to label this one +TUNEL assay,,,"Method, Data", +Unspecified,,,None, +Magnetically Activated Cell Sorting,,,"Method, Data", +Optical Tweezers,,,Method, +Magnetic Twisting Cytometry,,,"Method, Data", +Micropipette Aspiration,,,Method, +Ribosomal P Protein Antibody Measurement,,,"Method, Data", +Immunoassay,,,Method, +In Vitro Selection,,,Method, +Autoradiography,,,"Method, Data", +Nanowire,,,Method, +RIP,,,"Method, Data", +scCGI-seq,,,"Method, Data", +scNT-Seq,,,"Method, Data", +scSLAM-seq,,,"Method, Data", +Tiling Array,,,Method, +High-Content Screen,,,Method, +MeDIP,,,"Method, Data", +MeRIP-Seq,,,"Method, Data", +Nano-hmC-Seal,,,"Method, Data", +Nested PCR,,,Method, +Optical Stretcher,,,Method, +Photoacoustic Imaging,,,"Method, Data", +RIP-Seq,,,"Method, Data", +seqFISH,,,"Method, Data", +Synthesis,,,Method, +TAB-Seq,,,"Method, Data", +Targeted Error Correction Sequencing,,,"Method, Data", +Virus Plaque Assay,,,"Method, Data", +Von Kossa Staining,,,Method, +Optical Mapping,,,Method, +Synaptophysin Staining Method,,,Method, \ No newline at end of file From 3f2273566618dc6e6d5b4f627a09139edaf248f8 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 5 Mar 2025 15:53:54 -0800 Subject: [PATCH 025/106] Revert "Create mc2_assay_icon_tag_map_3-4-25.csv" This reverts commit 691193cda162ba3e661ac2e4ccf78563adc6e6f1. --- .../shared/mc2_assay_icon_tag_map_3-4-25.csv | 381 ------------------ 1 file changed, 381 deletions(-) delete mode 100644 modules/shared/mc2_assay_icon_tag_map_3-4-25.csv diff --git a/modules/shared/mc2_assay_icon_tag_map_3-4-25.csv b/modules/shared/mc2_assay_icon_tag_map_3-4-25.csv deleted file mode 100644 index 10d25bd4..00000000 --- a/modules/shared/mc2_assay_icon_tag_map_3-4-25.csv +++ /dev/null @@ -1,381 +0,0 @@ -assay,label,Secondary Labels,Term Type,Notes -Western Blotting,bioChemicalPhysical,,"Method, Data", -ELISA,bioChemicalPhysical,,"Method, Data", -Migration Assay,bioChemicalPhysical,,"Method, Data", -Cell Proliferation Assay,bioChemicalPhysical,,"Method, Data", -Cell Viability Assay,bioChemicalPhysical,,"Method, Data", -Colorimetric Cell Viability Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", -Immunoprecipitation,bioChemicalPhysical,,Method, -Invasion Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", -Rheometry,bioChemicalPhysical,Cell Profiling,"Method, Data", -Apoptosis Assay,bioChemicalPhysical,,"Method, Data", -Luciferase Reporter Assay,bioChemicalPhysical,,"Method, Data", -Nuclear Magnetic Resonance,bioChemicalPhysical,,"Method, Data", -Co-Immunoprecipitation,bioChemicalPhysical,,Method, -Cytotoxicity Assay,bioChemicalPhysical,,"Method, Data", -Transwell Assay,bioChemicalPhysical,,"Method, Data", -High Throughput Screening,bioChemicalPhysical,,Method, -Enzyme Activity Assay,bioChemicalPhysical,,"Method, Data", -Traction Force Microscopy,bioChemicalPhysical,Microscopy,"Method, Data", -Binding Assay,bioChemicalPhysical,,"Method, Data", -Proximity Ligation Assay,bioChemicalPhysical,,"Method, Data", -X-Ray Crystallography,bioChemicalPhysical,,"Method, Data", -Pull-Down Assay,bioChemicalPhysical,,"Method, Data", -Co-culture Assay,bioChemicalPhysical,,"Method, Data", -Cryo-Electron Microscopy,bioChemicalPhysical,Structure Determination,"Method, Data", -Dynamic Light Scattering,bioChemicalPhysical,,Method, -Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", -Magnetic Tweezers,bioChemicalPhysical,,Method, -Phagocytosis Assay,bioChemicalPhysical,,"Method, Data", -Size Exclusion Chromatography,bioChemicalPhysical,,"Method, Data", -Soft Agar Assay,bioChemicalPhysical,,"Method, Data", -Fluorescence Correlation Spectroscopy,bioChemicalPhysical,,"Method, Data", -Forster Resonance Energy Transfer,bioChemicalPhysical,,"Method, Data", -Cell Adhesion Assay,bioChemicalPhysical,,"Method, Data", -In Vivo Bioluminescence,bioChemicalPhysical,,"Method, Data", -CellTiter-Glo Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", -Fluorescence Recovery After Photo-Bleaching,bioChemicalPhysical,,"Method, Data", -Fourier-Transform Infrared Spectroscopy,bioChemicalPhysical,,"Method, Data", -In Vitro Cell Killing Assay,bioChemicalPhysical,,"Method, Data", -Permeability Assay,bioChemicalPhysical,,"Method, Data", -Raman Spectroscopy,bioChemicalPhysical,,"Method, Data", -Partial Wave Spectroscopy,bioChemicalPhysical,,"Method, Data", -Single Cell Gel Electrophoresis,bioChemicalPhysical,,"Method, Data", -Surface Plasmon Resonance,bioChemicalPhysical,,"Method, Data", -Enzyme-Linked Immunospot Assay,bioChemicalPhysical,,"Method, Data", -Small-Angle X-ray Scattering,bioChemicalPhysical,,"Method, Data", -Cell Cycle Assay,bioChemicalPhysical,,"Method, Data", -Chemotaxis Assay,bioChemicalPhysical,,"Method, Data", -Electrophoretic Mobility Shift Assay,bioChemicalPhysical,,"Method, Data", -Fluorescent Cell Barcoding,bioChemicalPhysical,,Method, -Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,bioChemicalPhysical,,"Method, Data", -Antitumor Drug Screening Assay,bioChemicalPhysical,,"Method, Data", -Atomic Absorption Spectrophotometry,bioChemicalPhysical,,"Method, Data", -ATP Bioluminescence Assay,bioChemicalPhysical,,"Method, Data", -Bio-Layer Interferometry,bioChemicalPhysical,,"Method, Data", -Dye Endocytosis Assay,bioChemicalPhysical,,"Method, Data", -Electron Paramagnetic Resonance Spectroscopy,bioChemicalPhysical,,"Method, Data", -MULTI-Seq,bioChemicalPhysical,,"Method, Data", -Reverse-Phase High-Performance liquid Chromatography,bioChemicalPhysical,,"Method, Data", -Single Molecule Forster Resonance Energy Transfer,bioChemicalPhysical,,Method, -Stimulated Raman Scattering,bioChemicalPhysical,,"Method, Data", -Survival Analysis,bioChemicalPhysical,,"Method, Data", -Thermal Shift Assay,bioChemicalPhysical,,"Method, Data", -Wound-Healing Assay,bioChemicalPhysical,,"Method, Data", -Angiogenesis Assay,bioChemicalPhysical,,"Method, Data", -Atomic Absorption Spectroscopy,bioChemicalPhysical,,"Method, Data", -Circular Dichroism Spectroscopy,bioChemicalPhysical,,"Method, Data", -Differential Scanning Fluorimetry,bioChemicalPhysical,,"Method, Data", -Dynamic Force Spectroscopy,bioChemicalPhysical,,"Method, Data", -Mammosphere Formation Assay,bioChemicalPhysical,,"Method, Data", -MEMA Cell Growth Assay,bioChemicalPhysical,,"Method, Data", -Micropipette Adhesion Assay,bioChemicalPhysical,,"Method, Data", -Optical Emission Spectroscopy,bioChemicalPhysical,,"Method, Data", -Optogenetic Assay,bioChemicalPhysical,,"Method, Data", -RAS Protein Family Activation Assay,bioChemicalPhysical,,"Method, Data", -Suspended Microchannel Resonator,bioChemicalPhysical,,Method, -Bioelectrochemical Analysis,bioChemicalPhysical,,"Method, Data", -Cell Fractionation,bioChemicalPhysical,,Method, -Cell-spreading Assay,bioChemicalPhysical,,"Method, Data", -Chemiluminescent Assay,bioChemicalPhysical,,"Method, Data", -Clonality Analysis,bioChemicalPhysical,,"Method, Data", -Cytometric Bead Array Assay,bioChemicalPhysical,,"Method, Data", -Efferocytosis Assay,bioChemicalPhysical,,"Method, Data", -Electron Diffraction,bioChemicalPhysical,,Method, -Endotoxin Assay,bioChemicalPhysical,,"Method, Data", -Energy-Dispersive X-Ray Spectroscopy,bioChemicalPhysical,,"Method, Data", -Gelatin Zymography,bioChemicalPhysical,,"Method, Data", -Graphite Furnace Atomic Absorption Spectrometry,bioChemicalPhysical,,"Method, Data", -Hydrophilic Interaction Chromatography,bioChemicalPhysical,,"Method, Data", -In Vitro Translation,bioChemicalPhysical,,Method, -In-Cell Western Assay,bioChemicalPhysical,,"Method, Data", -Isothermal Titration Calorimetry,bioChemicalPhysical,,"Method, Data", -Macrophage Polarization Assay,bioChemicalPhysical,,"Method, Data", -Metastatic Colonization Assay,bioChemicalPhysical,,"Method, Data", -Microcontact Printing,bioChemicalPhysical,,Method, -Multi-Angle Light Scattering,bioChemicalPhysical,,"Method, Data", -Paraquat Survival Assay,bioChemicalPhysical,,"Method, Data", -Photolithography,bioChemicalPhysical,,Method, -Scratch Assay,bioChemicalPhysical,,"Method, Data", -SDS-PAGE,bioChemicalPhysical,,"Method, Data", -Single Cell Cytokine Detection Chip Assay,bioChemicalPhysical,,"Method, Data", -Single-Cell Barcode Chip,bioChemicalPhysical,,"Method, Data", -Surveyor Nuclease Assay,bioChemicalPhysical,,"Method, Data", -Target Engagement Assay,bioChemicalPhysical,,"Method, Data", -Thin-Layer Chromatography,bioChemicalPhysical,,"Method, Data", -Time-Correlated Single Photon Counting,bioChemicalPhysical,,"Method, Data", -UV Photocrosslinking,bioChemicalPhysical,,Method, -Vibrational Spectroscopy,bioChemicalPhysical,,"Method, Data", -X-Ray Diffraction,bioChemicalPhysical,,Method, -Spectroscopy,bioChemicalPhysical,,Method,Not sure how to label this one -Immobilized Metal Affinity Chromatography,bioChemicalPhysical,,Method, -Magnetic Resonance Imaging,clinical,Imaging,"Method, Data", -Computed Tomography,clinical,Imaging,"Method, Data", -Transmission Electron Microscopy,clinical,Imaging,"Method, Data", -Immunotherapy,clinical,,Method,Not sure about this one -Positron Emission Tomography,clinical,Imaging,"Method, Data", -Clinical Study,clinical,,"Method, Data", -PET-CT,clinical,,"Method, Data", -Dynamic Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", -Micro-computed Tomography,clinical,,"Method, Data", -Optical Coherence Tomography,clinical,,"Method, Data", -Questionnaire,clinical,,Method, -Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", -Epidemiological Method,clinical,,Method, -Multiplexed Ion Beam Imaging,clinical,,"Method, Data", -Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", -Ultrasound Imaging,clinical,,"Method, Data", -X-Ray Micro-Computed Tomography,clinical,,"Method, Data", -Cryo-Electron Tomography,clinical,,"Method, Data", -Quantitative Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", -Computational Tool,computationalTool,"In silico, Data Analysis",Method, -Data Integration,dataReuse,,Method,This typically indicates that the resource included secondary analysis/integration of publicly available data -ChIP-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", -ATAC-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, DNA Accessibility","Method, Data", -Hi-C,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Chromatin Conformation","Method, Data", -DNA Methylation Array,epigenomeProfiling,"Microarray, Methylation","Method, Data", -Single Cell ATAC-Seq,epigenomeProfiling,"Sequencing, Single-cell, Epigenome, DNA Accessibility","Method, Data", -Bisulfite Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Methylation","Method, Data", -ChIP-qPCR assay,epigenomeProfiling,"PCR, Bulk, DNA, Epigenome, Protein Localization","Method, Data", -CUT&RUN,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", -CUT&Tag-Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", -Reduced Representation Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", -3C,epigenomeProfiling,,"Method, Data", -ChIP-PCR,epigenomeProfiling,,"Method, Data", -MNase-Seq,epigenomeProfiling,,"Method, Data", -5C,epigenomeProfiling,,"Method, Data", -ChIA-PET,epigenomeProfiling,,"Method, Data", -HiChIP,epigenomeProfiling,,"Method, Data", -Methyl Binding Domain Sequencing,epigenomeProfiling,,"Method, Data", -Whole Genome Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", -3C-qPCR,epigenomeProfiling,,"Method, Data", -4C,epigenomeProfiling,,"Method, Data", -Cross-Linking Immunoprecipitation High-throughput Sequencing,epigenomeProfiling,,"Method, Data", -eCLIP-Seq,epigenomeProfiling,,"Method, Data", -CLIP-qPCR,epigenomeProfiling,,"Method, Data", -Global Chromatin Profiling,epigenomeProfiling,,"Method, Data", -HL-Chip,epigenomeProfiling,,"Method, Data", -Methylation-Specific PCR,epigenomeProfiling,,Method, -Mint-ChIP,epigenomeProfiling,,"Method, Data", -RNA Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", -Single Cell RNA-Sequencing,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", -RT-qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", -qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", -DNA Gene-Expression Microarray,expressionProfiling,Microarray,"Method, Data", -RT-PCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", -Targeted Transcriptome Sequencing,expressionProfiling,"Sequencing, Targeted, RNA","Method, Data", -Global Run-On Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", -cDNA Array,expressionProfiling,"Microarray, cDNA",Method, -snRNA-seq,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", -MicroRNA Sequencing,expressionProfiling,,"Method, Data", -mRNA Sequencing,expressionProfiling,,"Method, Data", -Gene Set Enrichment Analysis,expressionProfiling,,"Method, Data", -Single-Cell TCR Sequencing,expressionProfiling,,"Method, Data", -Droplet Digital PCR,expressionProfiling,,"Method, Data", -MicroRNA Expression Array,expressionProfiling,,"Method, Data", -10-cell RNA Sequencing,expressionProfiling,,"Method, Data", -3' RNA-seq,expressionProfiling,,"Method, Data", -smFISH,expressionProfiling,,"Method, Data", -smRNA-seq,expressionProfiling,,"Method, Data", -Nm-seq,expressionProfiling,,"Method, Data", -Precision Run-On Sequencing,expressionProfiling,,"Method, Data", -Single-Cell BCR Sequencing,expressionProfiling,,"Method, Data", -Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", -PlateSeq,expressionProfiling,,"Method, Data", -Single Nucleus RNA-Sequencing,expressionProfiling,,"Method, Data", -Southern Blotting,expressionProfiling,,"Method, Data", -CASFISH,expressionProfiling,,"Method, Data", -Direct Long-Read RNA Sequencing,expressionProfiling,,"Method, Data", -L1000 mRNA Profiling Assay,expressionProfiling,,"Method, Data", -QFISH,expressionProfiling,,"Method, Data", -Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", -CITE-seq,"expressionProfiling, proteomics",,"Method, Data", -Whole Exome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", -Whole Genome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", -FISH,genomeProfiling,"Fluorescence, Probe-based","Method, Data", -In Situ Hybridization,genomeProfiling,"Probe-based, Targeted, Genome","Method, Data", -Targeted Genome Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", -Barcode-Seq,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", -DNA Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", -Single Nucleotide Polymorphism Array,genomeProfiling,"Microarray, Genetic Variants","Method, Data", -16S Ribosomal Gene Sequencing Assay,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", -TCR Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", -Dideoxy Chain Termination DNA Sequencing,genomeProfiling,,"Method, Data", -Tissue Microarray,genomeProfiling,,Method, -ImmunoFISH,genomeProfiling,,Method, -Gene Ontology Enrichment Analysis,genomeProfiling,,"Method, Data", -Single Cell DNA Sequencing,genomeProfiling,,"Method, Data", -DRIP-seq,genomeProfiling,,"Method, Data", -Genotyping,genomeProfiling,,"Method, Data", -Tuba-Seq,genomeProfiling,,"Method, Data", -Nanopore Sequencing,genomeProfiling,,"Method, Data", -Amplicon Sequencing,genomeProfiling,,"Method, Data", -DNase-Seq,genomeProfiling,,"Method, Data", -Drop-Seq,genomeProfiling,,"Method, Data", -Structural Variant Analysis,genomeProfiling,,"Method, Data", -Cell-free Circulating Tumor DNA Assay,genomeProfiling,,"Method, Data", -Comparative Genomic Hybridization,genomeProfiling,,"Method, Data", -FAIRE-Seq,genomeProfiling,,"Method, Data", -Karyotyping,genomeProfiling,,"Method, Data", -Deep Mutational Scanning,genomeProfiling,,"Method, Data", -Imaging,imaging,Microscopy,Method, -Immunohistochemistry Staining Method,imaging,,Method, -Fluorescent Antibody Procedure,imaging,,Method, -Confocal Microscopy,imaging,"Microscopy, Confocal","Method, Data", -Microscopy,imaging,Microscopy,Method, -Fluorescence Microscopy,imaging,"Microscopy, Fluorescence","Method, Data", -Hematoxylin and Eosin Staining Method,imaging,,Method, -Time Lapse Microscopy,imaging,"Microscopy, Time-course","Method, Data", -Cyclic Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", -Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", -Bioluminescence Imaging,imaging,Microscopy,"Method, Data", -Atomic Force Microscopy,imaging,"Microscopy, Atomic Force","Method, Data", -Fluorescence Imaging,imaging,"Microscopy, Fluorescence","Method, Data", -Immunocytochemistry,imaging,,Method, -Immunofluorescent Staining Method,imaging,,Method, -Quantitative Multiplex Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", -Brightfield Microscopy,imaging,"Microscopy, Brightfield","Method, Data", -Scanning Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", -Multiphoton Microscopy,imaging,,"Method, Data", -Multiscale Light Sheet Microscopy,imaging,Microscopy,"Method, Data", -Multiplexed Immunofluorescence,imaging,,"Method, Data", -Brillouin Microscopy,imaging,,"Method, Data", -Multiplexed Immunohistochemistry,imaging,,Method, -Fluorescence Lifetime Imaging Microscopy,imaging,,"Method, Data", -TIRF Microscopy,imaging,,"Method, Data", -Widefield Fluorescence Microscopy,imaging,,"Method, Data", -Differential Interference Contrast Microscopy,imaging,,"Method, Data", -Second-Harmonic Imaging Microscopy,imaging,,"Method, Data", -Intravital Microscopy,imaging,,"Method, Data", -Single-Molecule Localization Microscopy,imaging,,"Method, Data", -Cytochemical Stain,imaging,,Method, -Super-Resolution Microscopy,imaging,,"Method, Data", -TRAP Staining,imaging,,Method, -Focused Ion Beam Scanning Electron Microscopy,imaging,,"Method, Data", -Lattice Light Sheet Microscopy,imaging,,"Method, Data", -Monolayer Stress Microscopy,imaging,,"Method, Data", -Multiparametric Magnetic Resonance Imaging,imaging,,"Method, Data", -Confocal Reflectance Quantitative Phase Microscopy,imaging,,"Method, Data", -Dark Field Microscopy,imaging,,"Method, Data", -Diffusion Weighted Imaging,imaging,,"Method, Data", -Light Sheet Microscopy,imaging,,"Method, Data", -Single-Molecule Tracking,imaging,,"Method, Data", -Sirius Red Staining,imaging,,Method, -Stimulated Emission Depletion Microscopy,imaging,,"Method, Data", -Stochastic Optical Reconstruction Microscopy,imaging,,"Method, Data", -Trichrome Staining Method,imaging,,Method, -Alcian Blue Staining Method,imaging,,Method, -Bicinchoninic Acid Assay,imaging,,"Method, Data", -Cerenkov Luminescence Imaging,imaging,,"Method, Data", -Field-Emission Scanning Electron Microscopy,imaging,,"Method, Data", -Interference Reflection Microscopy,imaging,,"Method, Data", -Knife-Edge Scanning Microscopy,imaging,,"Method, Data", -Low-Vacuum Scanning Electron Microscopy,imaging,,"Method, Data", -Picrosirius Staining,imaging,,Method, -Scanning Angle Interference Microscopy,imaging,,"Method, Data", -Total Internal Reflection Fluorescence Microscopy,imaging,,"Method, Data", -Computational Modeling,inSilicoModel,Computational,"Method, Data", -Mathematical Modeling,inSilicoModel,Mathematical,"Method, Data", -Statistical Modeling,inSilicoModel,"Mathematical, Statistics",Method, -Molecular Simulations,inSilicoModel,Simulation,"Method, Data", -Deep Learning,inSilicoModel,,Method, -Artificial Intelligence,inSilicoModel,,Method, -Murine Model,modelSystem,Murine,Method, -3D Cell Culture,modelSystem,"Cell Culture, 3D",Method, -Microfluidics,modelSystem,Microfluidics,Method, -CRISPR,modelSystem,Genome Manipulation,Method, -Hydrogels,modelSystem,"Cell Culture, 3D",Method, -Xenograft,modelSystem,,Method, -Tissue Engineering,modelSystem,,Method, -Cell Culture,modelSystem,Cell Culture,Method, -Patient Derived Xenograft,modelSystem,Patient Derived,Method, -Organoid,modelSystem,"Cell Culture, 3D",Method, -In Vitro Model,modelSystem,Cell Culture,Method, -siRNA,modelSystem,Genome Manipulation,Method, -shRNA,modelSystem,Genome Manipulation,Method, -Plasmid Construction,modelSystem,Genome Manipulation,Method,Not sure about this one -Dual-Luciferase Reporter Assay,modelSystem,Biochemical/Biophysical,"Method, Data", -Nanopatterning,modelSystem,,Method, -Reporter Gene Assay,modelSystem,,"Method, Data", -RNAi Screen,modelSystem,,Method, -Allograft,modelSystem,,Method, -Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture,modelSystem,,Method, -Chimeric Antigen Receptor T-Cell Therapy,modelSystem,,Method, -Phylogenetic Analysis,modelSystem,,"Method, Data", -Viral Transduction,modelSystem,,Method, -Synthetic Genetic Array,modelSystem,,Method, -Gene Silencing,modelSystem,,Method, -3D Bioprinting,modelSystem,,Method, -Targeted Therapy Agent,modelSystem,,Method, -Flow Cytometry,proteomics,Cell Sorting,"Method, Data", -Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", -Fluorescence Activated Cell Sorting,proteomics,"Cell Profiling, Fluorescence","Method, Data", -Proteomics Assay,proteomics,,"Method, Data", -Liquid Chromatography/Tandem Mass Spectrometry,proteomics,"Mass Spectrometry, Tandem","Method, Data", -Mass Cytometry,proteomics,Cytometry,"Method, Data", -Liquid Chromatography Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", -MALDI-TOF Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", -Reverse Phase Protein Array,proteomics,,"Method, Data", -Affinity Purification Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", -HPLC-MSMS,proteomics,Mass Spectrometry,"Method, Data", -Cytokine Expression Profile,proteomics,,Method, -Ribo-Seq,proteomics,,"Method, Data", -Gas Chromatography Mass Spectrometry,proteomics,,"Method, Data", -Tandem Mass Spectrometry,proteomics,,"Method, Data", -Image Cytometry,proteomics,,"Method, Data", -Metabolite Profiling Assay,proteomics,,"Method, Data", -Inductively-Coupled Plasma Mass Spectrometry,proteomics,,"Method, Data", -Co-Immunoprecipitation Mass Spectrometry,proteomics,,"Method, Data", -Desorption Electrospray Ionization,proteomics,,Method, -Electrospray Ionization Time-of-Flight Mass Spectrometry,proteomics,,"Method, Data", -Label-free Protein Quantification by LC/MS,proteomics,,"Method, Data", -Shotgun Mass Spectrometry,proteomics,,"Method, Data", -Cross-Linking Mass Spectrometry,proteomics,,"Method, Data", -Tandem Mass Tagging,proteomics,,Method, -UPLC-MSMS,proteomics,,"Method, Data", -Collision-Induced Dissociation,proteomics,,Method, -Multi-Isotope Mass Spectrometry,proteomics,,"Method, Data", -NanoString Digital Spatial Profiling,spatialProfiling,"Expression Profiling, Proteomics, Imaging, Probe-based, Targeted, RNA","Method, Data", -Visium Spatial Gene Expression,spatialProfiling,"Expression Profiling, Imaging, Probe-based, Targeted, RNA","Method, Data", -Multiplexed Error-Robust Fluorescence In Situ Hybridization,spatialProfiling,,"Method, Data", -Imaging Mass Cytometry,spatialProfiling,,"Method, Data", -10x Multiome,spatialProfiling,,"Method, Data", -DBiT-Seq,spatialProfiling,,"Method, Data", -Transcription profiling by NanoString,spatialProfiling,,"Method, Data", -Not Applicable,,,None, -Pending Annotation,,,None, -PCR,,,Method,Not sure how to label this one -Next Generation Sequencing,,,Method,Not sure how to label this one -Modeling,,,Method,Not sure how to label this one -TUNEL assay,,,"Method, Data", -Unspecified,,,None, -Magnetically Activated Cell Sorting,,,"Method, Data", -Optical Tweezers,,,Method, -Magnetic Twisting Cytometry,,,"Method, Data", -Micropipette Aspiration,,,Method, -Ribosomal P Protein Antibody Measurement,,,"Method, Data", -Immunoassay,,,Method, -In Vitro Selection,,,Method, -Autoradiography,,,"Method, Data", -Nanowire,,,Method, -RIP,,,"Method, Data", -scCGI-seq,,,"Method, Data", -scNT-Seq,,,"Method, Data", -scSLAM-seq,,,"Method, Data", -Tiling Array,,,Method, -High-Content Screen,,,Method, -MeDIP,,,"Method, Data", -MeRIP-Seq,,,"Method, Data", -Nano-hmC-Seal,,,"Method, Data", -Nested PCR,,,Method, -Optical Stretcher,,,Method, -Photoacoustic Imaging,,,"Method, Data", -RIP-Seq,,,"Method, Data", -seqFISH,,,"Method, Data", -Synthesis,,,Method, -TAB-Seq,,,"Method, Data", -Targeted Error Correction Sequencing,,,"Method, Data", -Virus Plaque Assay,,,"Method, Data", -Von Kossa Staining,,,Method, -Optical Mapping,,,Method, -Synaptophysin Staining Method,,,Method, \ No newline at end of file From 9bb7beb939970ad6e8cac73e03d663d3aff6afd4 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 5 Mar 2025 15:55:36 -0800 Subject: [PATCH 026/106] Add iconTag mappings for MC2 assays To help prepare resource content tags for the CCKP, this file relates valid values for assay with high level categorical labels. This is intended to be used as input during portal sync operations. --- modules/shared/mc2_iconTag_map_3-4-25.csv | 381 ++++++++++++++++++++++ 1 file changed, 381 insertions(+) create mode 100644 modules/shared/mc2_iconTag_map_3-4-25.csv diff --git a/modules/shared/mc2_iconTag_map_3-4-25.csv b/modules/shared/mc2_iconTag_map_3-4-25.csv new file mode 100644 index 00000000..7fdbe616 --- /dev/null +++ b/modules/shared/mc2_iconTag_map_3-4-25.csv @@ -0,0 +1,381 @@ +term,label,Secondary Labels,Term Type,Notes +Western Blotting,bioChemicalPhysical,,"Method, Data", +ELISA,bioChemicalPhysical,,"Method, Data", +Migration Assay,bioChemicalPhysical,,"Method, Data", +Cell Proliferation Assay,bioChemicalPhysical,,"Method, Data", +Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Colorimetric Cell Viability Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", +Immunoprecipitation,bioChemicalPhysical,,Method, +Invasion Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", +Rheometry,bioChemicalPhysical,Cell Profiling,"Method, Data", +Apoptosis Assay,bioChemicalPhysical,,"Method, Data", +Luciferase Reporter Assay,bioChemicalPhysical,,"Method, Data", +Nuclear Magnetic Resonance,bioChemicalPhysical,,"Method, Data", +Co-Immunoprecipitation,bioChemicalPhysical,,Method, +Cytotoxicity Assay,bioChemicalPhysical,,"Method, Data", +Transwell Assay,bioChemicalPhysical,,"Method, Data", +High Throughput Screening,bioChemicalPhysical,,Method, +Enzyme Activity Assay,bioChemicalPhysical,,"Method, Data", +Traction Force Microscopy,bioChemicalPhysical,Microscopy,"Method, Data", +Binding Assay,bioChemicalPhysical,,"Method, Data", +Proximity Ligation Assay,bioChemicalPhysical,,"Method, Data", +X-Ray Crystallography,bioChemicalPhysical,,"Method, Data", +Pull-Down Assay,bioChemicalPhysical,,"Method, Data", +Co-culture Assay,bioChemicalPhysical,,"Method, Data", +Cryo-Electron Microscopy,bioChemicalPhysical,Structure Determination,"Method, Data", +Dynamic Light Scattering,bioChemicalPhysical,,Method, +Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Magnetic Tweezers,bioChemicalPhysical,,Method, +Phagocytosis Assay,bioChemicalPhysical,,"Method, Data", +Size Exclusion Chromatography,bioChemicalPhysical,,"Method, Data", +Soft Agar Assay,bioChemicalPhysical,,"Method, Data", +Fluorescence Correlation Spectroscopy,bioChemicalPhysical,,"Method, Data", +Forster Resonance Energy Transfer,bioChemicalPhysical,,"Method, Data", +Cell Adhesion Assay,bioChemicalPhysical,,"Method, Data", +In Vivo Bioluminescence,bioChemicalPhysical,,"Method, Data", +CellTiter-Glo Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Fluorescence Recovery After Photo-Bleaching,bioChemicalPhysical,,"Method, Data", +Fourier-Transform Infrared Spectroscopy,bioChemicalPhysical,,"Method, Data", +In Vitro Cell Killing Assay,bioChemicalPhysical,,"Method, Data", +Permeability Assay,bioChemicalPhysical,,"Method, Data", +Raman Spectroscopy,bioChemicalPhysical,,"Method, Data", +Partial Wave Spectroscopy,bioChemicalPhysical,,"Method, Data", +Single Cell Gel Electrophoresis,bioChemicalPhysical,,"Method, Data", +Surface Plasmon Resonance,bioChemicalPhysical,,"Method, Data", +Enzyme-Linked Immunospot Assay,bioChemicalPhysical,,"Method, Data", +Small-Angle X-ray Scattering,bioChemicalPhysical,,"Method, Data", +Cell Cycle Assay,bioChemicalPhysical,,"Method, Data", +Chemotaxis Assay,bioChemicalPhysical,,"Method, Data", +Electrophoretic Mobility Shift Assay,bioChemicalPhysical,,"Method, Data", +Fluorescent Cell Barcoding,bioChemicalPhysical,,Method, +Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,bioChemicalPhysical,,"Method, Data", +Antitumor Drug Screening Assay,bioChemicalPhysical,,"Method, Data", +Atomic Absorption Spectrophotometry,bioChemicalPhysical,,"Method, Data", +ATP Bioluminescence Assay,bioChemicalPhysical,,"Method, Data", +Bio-Layer Interferometry,bioChemicalPhysical,,"Method, Data", +Dye Endocytosis Assay,bioChemicalPhysical,,"Method, Data", +Electron Paramagnetic Resonance Spectroscopy,bioChemicalPhysical,,"Method, Data", +MULTI-Seq,bioChemicalPhysical,,"Method, Data", +Reverse-Phase High-Performance liquid Chromatography,bioChemicalPhysical,,"Method, Data", +Single Molecule Forster Resonance Energy Transfer,bioChemicalPhysical,,Method, +Stimulated Raman Scattering,bioChemicalPhysical,,"Method, Data", +Survival Analysis,bioChemicalPhysical,,"Method, Data", +Thermal Shift Assay,bioChemicalPhysical,,"Method, Data", +Wound-Healing Assay,bioChemicalPhysical,,"Method, Data", +Angiogenesis Assay,bioChemicalPhysical,,"Method, Data", +Atomic Absorption Spectroscopy,bioChemicalPhysical,,"Method, Data", +Circular Dichroism Spectroscopy,bioChemicalPhysical,,"Method, Data", +Differential Scanning Fluorimetry,bioChemicalPhysical,,"Method, Data", +Dynamic Force Spectroscopy,bioChemicalPhysical,,"Method, Data", +Mammosphere Formation Assay,bioChemicalPhysical,,"Method, Data", +MEMA Cell Growth Assay,bioChemicalPhysical,,"Method, Data", +Micropipette Adhesion Assay,bioChemicalPhysical,,"Method, Data", +Optical Emission Spectroscopy,bioChemicalPhysical,,"Method, Data", +Optogenetic Assay,bioChemicalPhysical,,"Method, Data", +RAS Protein Family Activation Assay,bioChemicalPhysical,,"Method, Data", +Suspended Microchannel Resonator,bioChemicalPhysical,,Method, +Bioelectrochemical Analysis,bioChemicalPhysical,,"Method, Data", +Cell Fractionation,bioChemicalPhysical,,Method, +Cell-spreading Assay,bioChemicalPhysical,,"Method, Data", +Chemiluminescent Assay,bioChemicalPhysical,,"Method, Data", +Clonality Analysis,bioChemicalPhysical,,"Method, Data", +Cytometric Bead Array Assay,bioChemicalPhysical,,"Method, Data", +Efferocytosis Assay,bioChemicalPhysical,,"Method, Data", +Electron Diffraction,bioChemicalPhysical,,Method, +Endotoxin Assay,bioChemicalPhysical,,"Method, Data", +Energy-Dispersive X-Ray Spectroscopy,bioChemicalPhysical,,"Method, Data", +Gelatin Zymography,bioChemicalPhysical,,"Method, Data", +Graphite Furnace Atomic Absorption Spectrometry,bioChemicalPhysical,,"Method, Data", +Hydrophilic Interaction Chromatography,bioChemicalPhysical,,"Method, Data", +In Vitro Translation,bioChemicalPhysical,,Method, +In-Cell Western Assay,bioChemicalPhysical,,"Method, Data", +Isothermal Titration Calorimetry,bioChemicalPhysical,,"Method, Data", +Macrophage Polarization Assay,bioChemicalPhysical,,"Method, Data", +Metastatic Colonization Assay,bioChemicalPhysical,,"Method, Data", +Microcontact Printing,bioChemicalPhysical,,Method, +Multi-Angle Light Scattering,bioChemicalPhysical,,"Method, Data", +Paraquat Survival Assay,bioChemicalPhysical,,"Method, Data", +Photolithography,bioChemicalPhysical,,Method, +Scratch Assay,bioChemicalPhysical,,"Method, Data", +SDS-PAGE,bioChemicalPhysical,,"Method, Data", +Single Cell Cytokine Detection Chip Assay,bioChemicalPhysical,,"Method, Data", +Single-Cell Barcode Chip,bioChemicalPhysical,,"Method, Data", +Surveyor Nuclease Assay,bioChemicalPhysical,,"Method, Data", +Target Engagement Assay,bioChemicalPhysical,,"Method, Data", +Thin-Layer Chromatography,bioChemicalPhysical,,"Method, Data", +Time-Correlated Single Photon Counting,bioChemicalPhysical,,"Method, Data", +UV Photocrosslinking,bioChemicalPhysical,,Method, +Vibrational Spectroscopy,bioChemicalPhysical,,"Method, Data", +X-Ray Diffraction,bioChemicalPhysical,,Method, +Spectroscopy,bioChemicalPhysical,,Method,Not sure how to label this one +Immobilized Metal Affinity Chromatography,bioChemicalPhysical,,Method, +Magnetic Resonance Imaging,clinical,Imaging,"Method, Data", +Computed Tomography,clinical,Imaging,"Method, Data", +Transmission Electron Microscopy,clinical,Imaging,"Method, Data", +Immunotherapy,clinical,,Method,Not sure about this one +Positron Emission Tomography,clinical,Imaging,"Method, Data", +Clinical Study,clinical,,"Method, Data", +PET-CT,clinical,,"Method, Data", +Dynamic Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", +Micro-computed Tomography,clinical,,"Method, Data", +Optical Coherence Tomography,clinical,,"Method, Data", +Questionnaire,clinical,,Method, +Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", +Epidemiological Method,clinical,,Method, +Multiplexed Ion Beam Imaging,clinical,,"Method, Data", +Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", +Ultrasound Imaging,clinical,,"Method, Data", +X-Ray Micro-Computed Tomography,clinical,,"Method, Data", +Cryo-Electron Tomography,clinical,,"Method, Data", +Quantitative Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", +Computational Tool,computationalTool,"In silico, Data Analysis",Method, +Data Integration,dataReuse,,Method,This typically indicates that the resource included secondary analysis/integration of publicly available data +ChIP-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +ATAC-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, DNA Accessibility","Method, Data", +Hi-C,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Chromatin Conformation","Method, Data", +DNA Methylation Array,epigenomeProfiling,"Microarray, Methylation","Method, Data", +Single Cell ATAC-Seq,epigenomeProfiling,"Sequencing, Single-cell, Epigenome, DNA Accessibility","Method, Data", +Bisulfite Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Methylation","Method, Data", +ChIP-qPCR assay,epigenomeProfiling,"PCR, Bulk, DNA, Epigenome, Protein Localization","Method, Data", +CUT&RUN,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +CUT&Tag-Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +Reduced Representation Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", +3C,epigenomeProfiling,,"Method, Data", +ChIP-PCR,epigenomeProfiling,,"Method, Data", +MNase-Seq,epigenomeProfiling,,"Method, Data", +5C,epigenomeProfiling,,"Method, Data", +ChIA-PET,epigenomeProfiling,,"Method, Data", +HiChIP,epigenomeProfiling,,"Method, Data", +Methyl Binding Domain Sequencing,epigenomeProfiling,,"Method, Data", +Whole Genome Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", +3C-qPCR,epigenomeProfiling,,"Method, Data", +4C,epigenomeProfiling,,"Method, Data", +Cross-Linking Immunoprecipitation High-throughput Sequencing,epigenomeProfiling,,"Method, Data", +eCLIP-Seq,epigenomeProfiling,,"Method, Data", +CLIP-qPCR,epigenomeProfiling,,"Method, Data", +Global Chromatin Profiling,epigenomeProfiling,,"Method, Data", +HL-Chip,epigenomeProfiling,,"Method, Data", +Methylation-Specific PCR,epigenomeProfiling,,Method, +Mint-ChIP,epigenomeProfiling,,"Method, Data", +RNA Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", +Single Cell RNA-Sequencing,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", +RT-qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +DNA Gene-Expression Microarray,expressionProfiling,Microarray,"Method, Data", +RT-PCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +Targeted Transcriptome Sequencing,expressionProfiling,"Sequencing, Targeted, RNA","Method, Data", +Global Run-On Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", +cDNA Array,expressionProfiling,"Microarray, cDNA",Method, +snRNA-seq,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", +MicroRNA Sequencing,expressionProfiling,,"Method, Data", +mRNA Sequencing,expressionProfiling,,"Method, Data", +Gene Set Enrichment Analysis,expressionProfiling,,"Method, Data", +Single-Cell TCR Sequencing,expressionProfiling,,"Method, Data", +Droplet Digital PCR,expressionProfiling,,"Method, Data", +MicroRNA Expression Array,expressionProfiling,,"Method, Data", +10-cell RNA Sequencing,expressionProfiling,,"Method, Data", +3' RNA-seq,expressionProfiling,,"Method, Data", +smFISH,expressionProfiling,,"Method, Data", +smRNA-seq,expressionProfiling,,"Method, Data", +Nm-seq,expressionProfiling,,"Method, Data", +Precision Run-On Sequencing,expressionProfiling,,"Method, Data", +Single-Cell BCR Sequencing,expressionProfiling,,"Method, Data", +Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", +PlateSeq,expressionProfiling,,"Method, Data", +Single Nucleus RNA-Sequencing,expressionProfiling,,"Method, Data", +Southern Blotting,expressionProfiling,,"Method, Data", +CASFISH,expressionProfiling,,"Method, Data", +Direct Long-Read RNA Sequencing,expressionProfiling,,"Method, Data", +L1000 mRNA Profiling Assay,expressionProfiling,,"Method, Data", +QFISH,expressionProfiling,,"Method, Data", +Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", +CITE-seq,"expressionProfiling, proteomics",,"Method, Data", +Whole Exome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +Whole Genome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +FISH,genomeProfiling,"Fluorescence, Probe-based","Method, Data", +In Situ Hybridization,genomeProfiling,"Probe-based, Targeted, Genome","Method, Data", +Targeted Genome Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +Barcode-Seq,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +DNA Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +Single Nucleotide Polymorphism Array,genomeProfiling,"Microarray, Genetic Variants","Method, Data", +16S Ribosomal Gene Sequencing Assay,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +TCR Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +Dideoxy Chain Termination DNA Sequencing,genomeProfiling,,"Method, Data", +Tissue Microarray,genomeProfiling,,Method, +ImmunoFISH,genomeProfiling,,Method, +Gene Ontology Enrichment Analysis,genomeProfiling,,"Method, Data", +Single Cell DNA Sequencing,genomeProfiling,,"Method, Data", +DRIP-seq,genomeProfiling,,"Method, Data", +Genotyping,genomeProfiling,,"Method, Data", +Tuba-Seq,genomeProfiling,,"Method, Data", +Nanopore Sequencing,genomeProfiling,,"Method, Data", +Amplicon Sequencing,genomeProfiling,,"Method, Data", +DNase-Seq,genomeProfiling,,"Method, Data", +Drop-Seq,genomeProfiling,,"Method, Data", +Structural Variant Analysis,genomeProfiling,,"Method, Data", +Cell-free Circulating Tumor DNA Assay,genomeProfiling,,"Method, Data", +Comparative Genomic Hybridization,genomeProfiling,,"Method, Data", +FAIRE-Seq,genomeProfiling,,"Method, Data", +Karyotyping,genomeProfiling,,"Method, Data", +Deep Mutational Scanning,genomeProfiling,,"Method, Data", +Imaging,imaging,Microscopy,Method, +Immunohistochemistry Staining Method,imaging,,Method, +Fluorescent Antibody Procedure,imaging,,Method, +Confocal Microscopy,imaging,"Microscopy, Confocal","Method, Data", +Microscopy,imaging,Microscopy,Method, +Fluorescence Microscopy,imaging,"Microscopy, Fluorescence","Method, Data", +Hematoxylin and Eosin Staining Method,imaging,,Method, +Time Lapse Microscopy,imaging,"Microscopy, Time-course","Method, Data", +Cyclic Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", +Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", +Bioluminescence Imaging,imaging,Microscopy,"Method, Data", +Atomic Force Microscopy,imaging,"Microscopy, Atomic Force","Method, Data", +Fluorescence Imaging,imaging,"Microscopy, Fluorescence","Method, Data", +Immunocytochemistry,imaging,,Method, +Immunofluorescent Staining Method,imaging,,Method, +Quantitative Multiplex Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", +Brightfield Microscopy,imaging,"Microscopy, Brightfield","Method, Data", +Scanning Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", +Multiphoton Microscopy,imaging,,"Method, Data", +Multiscale Light Sheet Microscopy,imaging,Microscopy,"Method, Data", +Multiplexed Immunofluorescence,imaging,,"Method, Data", +Brillouin Microscopy,imaging,,"Method, Data", +Multiplexed Immunohistochemistry,imaging,,Method, +Fluorescence Lifetime Imaging Microscopy,imaging,,"Method, Data", +TIRF Microscopy,imaging,,"Method, Data", +Widefield Fluorescence Microscopy,imaging,,"Method, Data", +Differential Interference Contrast Microscopy,imaging,,"Method, Data", +Second-Harmonic Imaging Microscopy,imaging,,"Method, Data", +Intravital Microscopy,imaging,,"Method, Data", +Single-Molecule Localization Microscopy,imaging,,"Method, Data", +Cytochemical Stain,imaging,,Method, +Super-Resolution Microscopy,imaging,,"Method, Data", +TRAP Staining,imaging,,Method, +Focused Ion Beam Scanning Electron Microscopy,imaging,,"Method, Data", +Lattice Light Sheet Microscopy,imaging,,"Method, Data", +Monolayer Stress Microscopy,imaging,,"Method, Data", +Multiparametric Magnetic Resonance Imaging,imaging,,"Method, Data", +Confocal Reflectance Quantitative Phase Microscopy,imaging,,"Method, Data", +Dark Field Microscopy,imaging,,"Method, Data", +Diffusion Weighted Imaging,imaging,,"Method, Data", +Light Sheet Microscopy,imaging,,"Method, Data", +Single-Molecule Tracking,imaging,,"Method, Data", +Sirius Red Staining,imaging,,Method, +Stimulated Emission Depletion Microscopy,imaging,,"Method, Data", +Stochastic Optical Reconstruction Microscopy,imaging,,"Method, Data", +Trichrome Staining Method,imaging,,Method, +Alcian Blue Staining Method,imaging,,Method, +Bicinchoninic Acid Assay,imaging,,"Method, Data", +Cerenkov Luminescence Imaging,imaging,,"Method, Data", +Field-Emission Scanning Electron Microscopy,imaging,,"Method, Data", +Interference Reflection Microscopy,imaging,,"Method, Data", +Knife-Edge Scanning Microscopy,imaging,,"Method, Data", +Low-Vacuum Scanning Electron Microscopy,imaging,,"Method, Data", +Picrosirius Staining,imaging,,Method, +Scanning Angle Interference Microscopy,imaging,,"Method, Data", +Total Internal Reflection Fluorescence Microscopy,imaging,,"Method, Data", +Computational Modeling,inSilicoModel,Computational,"Method, Data", +Mathematical Modeling,inSilicoModel,Mathematical,"Method, Data", +Statistical Modeling,inSilicoModel,"Mathematical, Statistics",Method, +Molecular Simulations,inSilicoModel,Simulation,"Method, Data", +Deep Learning,inSilicoModel,,Method, +Artificial Intelligence,inSilicoModel,,Method, +Murine Model,modelSystem,Murine,Method, +3D Cell Culture,modelSystem,"Cell Culture, 3D",Method, +Microfluidics,modelSystem,Microfluidics,Method, +CRISPR,modelSystem,Genome Manipulation,Method, +Hydrogels,modelSystem,"Cell Culture, 3D",Method, +Xenograft,modelSystem,,Method, +Tissue Engineering,modelSystem,,Method, +Cell Culture,modelSystem,Cell Culture,Method, +Patient Derived Xenograft,modelSystem,Patient Derived,Method, +Organoid,modelSystem,"Cell Culture, 3D",Method, +In Vitro Model,modelSystem,Cell Culture,Method, +siRNA,modelSystem,Genome Manipulation,Method, +shRNA,modelSystem,Genome Manipulation,Method, +Plasmid Construction,modelSystem,Genome Manipulation,Method,Not sure about this one +Dual-Luciferase Reporter Assay,modelSystem,Biochemical/Biophysical,"Method, Data", +Nanopatterning,modelSystem,,Method, +Reporter Gene Assay,modelSystem,,"Method, Data", +RNAi Screen,modelSystem,,Method, +Allograft,modelSystem,,Method, +Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture,modelSystem,,Method, +Chimeric Antigen Receptor T-Cell Therapy,modelSystem,,Method, +Phylogenetic Analysis,modelSystem,,"Method, Data", +Viral Transduction,modelSystem,,Method, +Synthetic Genetic Array,modelSystem,,Method, +Gene Silencing,modelSystem,,Method, +3D Bioprinting,modelSystem,,Method, +Targeted Therapy Agent,modelSystem,,Method, +Flow Cytometry,proteomics,Cell Sorting,"Method, Data", +Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +Fluorescence Activated Cell Sorting,proteomics,"Cell Profiling, Fluorescence","Method, Data", +Proteomics Assay,proteomics,,"Method, Data", +Liquid Chromatography/Tandem Mass Spectrometry,proteomics,"Mass Spectrometry, Tandem","Method, Data", +Mass Cytometry,proteomics,Cytometry,"Method, Data", +Liquid Chromatography Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +MALDI-TOF Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +Reverse Phase Protein Array,proteomics,,"Method, Data", +Affinity Purification Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +HPLC-MSMS,proteomics,Mass Spectrometry,"Method, Data", +Cytokine Expression Profile,proteomics,,Method, +Ribo-Seq,proteomics,,"Method, Data", +Gas Chromatography Mass Spectrometry,proteomics,,"Method, Data", +Tandem Mass Spectrometry,proteomics,,"Method, Data", +Image Cytometry,proteomics,,"Method, Data", +Metabolite Profiling Assay,proteomics,,"Method, Data", +Inductively-Coupled Plasma Mass Spectrometry,proteomics,,"Method, Data", +Co-Immunoprecipitation Mass Spectrometry,proteomics,,"Method, Data", +Desorption Electrospray Ionization,proteomics,,Method, +Electrospray Ionization Time-of-Flight Mass Spectrometry,proteomics,,"Method, Data", +Label-free Protein Quantification by LC/MS,proteomics,,"Method, Data", +Shotgun Mass Spectrometry,proteomics,,"Method, Data", +Cross-Linking Mass Spectrometry,proteomics,,"Method, Data", +Tandem Mass Tagging,proteomics,,Method, +UPLC-MSMS,proteomics,,"Method, Data", +Collision-Induced Dissociation,proteomics,,Method, +Multi-Isotope Mass Spectrometry,proteomics,,"Method, Data", +NanoString Digital Spatial Profiling,spatialProfiling,"Expression Profiling, Proteomics, Imaging, Probe-based, Targeted, RNA","Method, Data", +Visium Spatial Gene Expression,spatialProfiling,"Expression Profiling, Imaging, Probe-based, Targeted, RNA","Method, Data", +Multiplexed Error-Robust Fluorescence In Situ Hybridization,spatialProfiling,,"Method, Data", +Imaging Mass Cytometry,spatialProfiling,,"Method, Data", +10x Multiome,spatialProfiling,,"Method, Data", +DBiT-Seq,spatialProfiling,,"Method, Data", +Transcription profiling by NanoString,spatialProfiling,,"Method, Data", +Not Applicable,,,None, +Pending Annotation,,,None, +PCR,,,Method,Not sure how to label this one +Next Generation Sequencing,,,Method,Not sure how to label this one +Modeling,,,Method,Not sure how to label this one +TUNEL assay,,,"Method, Data", +Unspecified,,,None, +Magnetically Activated Cell Sorting,,,"Method, Data", +Optical Tweezers,,,Method, +Magnetic Twisting Cytometry,,,"Method, Data", +Micropipette Aspiration,,,Method, +Ribosomal P Protein Antibody Measurement,,,"Method, Data", +Immunoassay,,,Method, +In Vitro Selection,,,Method, +Autoradiography,,,"Method, Data", +Nanowire,,,Method, +RIP,,,"Method, Data", +scCGI-seq,,,"Method, Data", +scNT-Seq,,,"Method, Data", +scSLAM-seq,,,"Method, Data", +Tiling Array,,,Method, +High-Content Screen,,,Method, +MeDIP,,,"Method, Data", +MeRIP-Seq,,,"Method, Data", +Nano-hmC-Seal,,,"Method, Data", +Nested PCR,,,Method, +Optical Stretcher,,,Method, +Photoacoustic Imaging,,,"Method, Data", +RIP-Seq,,,"Method, Data", +seqFISH,,,"Method, Data", +Synthesis,,,Method, +TAB-Seq,,,"Method, Data", +Targeted Error Correction Sequencing,,,"Method, Data", +Virus Plaque Assay,,,"Method, Data", +Von Kossa Staining,,,Method, +Optical Mapping,,,Method, +Synaptophysin Staining Method,,,Method, \ No newline at end of file From e854e9a0093db08301c75d2a1f6a654bcda5bc2e Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 16:49:59 -0800 Subject: [PATCH 027/106] Create mc2.duoCodeAR_TEMPLATE.schema.json --- .../mc2.duoCodeAR_TEMPLATE.schema.json | 58 +++++++++++++++++++ 1 file changed, 58 insertions(+) create mode 100644 json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json diff --git a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json new file mode 100644 index 00000000..b0d1ad28 --- /dev/null +++ b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json @@ -0,0 +1,58 @@ +{ + "$schema": "http://json-schema.org/draft-07/schema", + "title": "MC2 Example AR-DUO schema", + "$id": "MC2-Infrastructure-Design-AR-DUO.1.0", + "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", + "allOf": [ + { + "if": { + "properties": { + "duoCodes": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": "RTN" + } + } + } + }, + "then": { + "properties": { + "_accessRequirementIds": { + "type": "array", + "contains": { + "const": 0 + } + } + } + } + }, + { + "if": { + "properties": { + "duoCodes": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": "NPU" + } + } + } + }, + "then": { + "properties": { + "_accessRequirementIds": { + "type": "array", + "contains": { + "const": 0 + } + } + } + } + } + ] +} \ No newline at end of file From 9e782f84ecd4a84c82a9d12a25a8351c5fb814fc Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 16:50:13 -0800 Subject: [PATCH 028/106] Delete mc2.duoCodeAR.schema.json --- json_schemas/mc2.duoCodeAR.schema.json | 58 -------------------------- 1 file changed, 58 deletions(-) delete mode 100644 json_schemas/mc2.duoCodeAR.schema.json diff --git a/json_schemas/mc2.duoCodeAR.schema.json b/json_schemas/mc2.duoCodeAR.schema.json deleted file mode 100644 index b0d1ad28..00000000 --- a/json_schemas/mc2.duoCodeAR.schema.json +++ /dev/null @@ -1,58 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema", - "title": "MC2 Example AR-DUO schema", - "$id": "MC2-Infrastructure-Design-AR-DUO.1.0", - "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", - "allOf": [ - { - "if": { - "properties": { - "duoCodes": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": "RTN" - } - } - } - }, - "then": { - "properties": { - "_accessRequirementIds": { - "type": "array", - "contains": { - "const": 0 - } - } - } - } - }, - { - "if": { - "properties": { - "duoCodes": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": "NPU" - } - } - } - }, - "then": { - "properties": { - "_accessRequirementIds": { - "type": "array", - "contains": { - "const": 0 - } - } - } - } - } - ] -} \ No newline at end of file From fdc147a07150a767c8ae6cd3e31393e37374ae07 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 17:34:37 -0800 Subject: [PATCH 029/106] Update annotationProperty.csv Add DUOplus attributes and identify existing Study attributes that map to some DUOplus elements --- modules/study/annotationProperty.csv | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index 9d4d952f..5e6ff835 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -1,15 +1,18 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License, Study Source Geography, Study Data Permission, Study Data Tier",FALSE,,,Grant View,, Study Name,Name of the study,,,TRUE,,,,,str -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.",,,TRUE,,,,,str Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,FALSE,,,,,str +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.",,,FALSE,,,,,str Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int -Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.,,,TRUE,,,,CDS/collection,int +Study De-identification Method Type,General description of the de-identification method. Maps to DUOplus3.,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str -Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str +Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str -Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like +Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, +Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,,,FALSE,,,,DUOplus,list like +Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,,,FALSE,,,,DUOplus,list like +Study Data Tier,The access tier(s) associated with the data in this study. Maps to DUOplus5.,,,FALSE,,,,DUOplus,list like From 5a3b0155b41cecd54e390b6616f2ec638a0b90b1 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 17:35:25 -0800 Subject: [PATCH 030/106] Update mapping.yaml Add valid value mappings for DUOplus analogs Study Source Geography, Study Data Permission, Study Data Tier --- modules/mapping.yaml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/modules/mapping.yaml b/modules/mapping.yaml index 8313f49e..9cf43208 100644 --- a/modules/mapping.yaml +++ b/modules/mapping.yaml @@ -303,6 +303,12 @@ study: src: study/studyLicense.csv - name: Study Index Date src: study/indexDate.csv + - name: Study Source Geography + src: study/sourceGeography.csv + - name: Study Data Permission + src: study/dataPermission.csv + - name: Study Data Tier + src: study/dataTier.csv tool: - name: Tool Grant Number From 3a238d3a2a7d7530f4d58d5c0130d9027da5e39f Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 17:35:33 -0800 Subject: [PATCH 031/106] Create dataPermission.csv --- modules/study/dataPermission.csv | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 modules/study/dataPermission.csv diff --git a/modules/study/dataPermission.csv b/modules/study/dataPermission.csv new file mode 100644 index 00000000..2038ed88 --- /dev/null +++ b/modules/study/dataPermission.csv @@ -0,0 +1,5 @@ +ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +Agreement,,,,FALSE,,Study Data Permission,,DUOplus4,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, +Attestation,,,,FALSE,,Study Data Permission,,DUOplus4,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, +Award,,,,FALSE,,Study Data Permission,,DUOplus4,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, +Other,,,,FALSE,,Study Data Permission,,DUOplus4,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, From e84058d99bfc3a07e7c2c37834a26e7baa0d3d69 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 17:35:37 -0800 Subject: [PATCH 032/106] Create dataTier.csv --- modules/study/dataTier.csv | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 modules/study/dataTier.csv diff --git a/modules/study/dataTier.csv b/modules/study/dataTier.csv new file mode 100644 index 00000000..ee9823a7 --- /dev/null +++ b/modules/study/dataTier.csv @@ -0,0 +1,5 @@ +ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +Anonymous,Data can be viewed and downloaded anonymously by anyone on the internet.,,,FALSE,,Study Data Tier,,DUOplus5,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, +Open,Users must have a Synapse account to download data.,,,FALSE,,Study Data Tier,,DUOplus5,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, +Controlled,Users must have a Synapse account and satisfy access conditions to download data.,,,FALSE,,Study Data Tier,,DUOplus5,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, +Private,Users must be provided access to data in Synapse by a project administrator.,,,FALSE,,Study Data Tier,,DUOplus5,,,,https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md,, From 6d3aa56a6a5503b5e7e95e2ca7a27d94f1e5f758 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 17:35:40 -0800 Subject: [PATCH 033/106] Create sourceGeography.csv --- modules/study/sourceGeography.csv | 250 ++++++++++++++++++++++++++++++ 1 file changed, 250 insertions(+) create mode 100644 modules/study/sourceGeography.csv diff --git a/modules/study/sourceGeography.csv b/modules/study/sourceGeography.csv new file mode 100644 index 00000000..14a03c25 --- /dev/null +++ b/modules/study/sourceGeography.csv @@ -0,0 +1,250 @@ +ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +AD,Andorra,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AE,United Arab Emirates (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AF,Afghanistan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AG,Antigua and Barbuda,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AI,Anguilla,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AL,Albania,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AM,Armenia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AO,Angola,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AQ,Antarctica,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AR,Argentina,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AS,American Samoa,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AT,Austria,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AU,Australia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AW,Aruba,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AX,Γ…land Islands,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +AZ,Azerbaijan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BA,Bosnia and Herzegovina,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BB,Barbados,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BD,Bangladesh,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BE,Belgium,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BF,Burkina Faso,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BG,Bulgaria,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BH,Bahrain,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BI,Burundi,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BJ,Benin,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BL,Saint BarthΓ©lemy,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BM,Bermuda,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BN,Brunei Darussalam,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BO,Bolivia (Plurinational State of),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BQ,"Bonaire, Sint Eustatius and Saba",,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BR,Brazil,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BS,Bahamas (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BT,Bhutan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BV,Bouvet Island,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BW,Botswana,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BY,Belarus,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +BZ,Belize,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CA,Canada,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CC,Cocos (Keeling) Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CD,Congo (the Democratic Republic of the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CF,Central African Republic (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CG,Congo (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CH,Switzerland,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CI,CΓ΄te d'Ivoire,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CK,Cook Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CL,Chile,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CM,Cameroon,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CN,China,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CO,Colombia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CR,Costa Rica,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CU,Cuba,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CV,Cabo Verde,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CW,CuraΓ§ao,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CX,Christmas Island,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CY,Cyprus,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +CZ,Czechia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +DE,Germany,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +DJ,Djibouti,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +DK,Denmark,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +DM,Dominica,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +DO,Dominican Republic (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +DZ,Algeria,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +EC,Ecuador,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +EE,Estonia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +EG,Egypt,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +EH,Western Sahara*,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ER,Eritrea,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ES,Spain,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ET,Ethiopia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +FI,Finland,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +FJ,Fiji,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +FK,Falkland Islands (the) [Malvinas],,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +FM,Micronesia (Federated States of),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +FO,Faroe Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +FR,France,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GA,Gabon,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GB,United Kingdom of Great Britain and Northern Ireland (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GD,Grenada,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GE,Georgia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GF,French Guiana,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GG,Guernsey,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GH,Ghana,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GI,Gibraltar,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GL,Greenland,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GM,Gambia (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GN,Guinea,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GP,Guadeloupe,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GQ,Equatorial Guinea,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GR,Greece,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GS,South Georgia and the South Sandwich Islands,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GT,Guatemala,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GU,Guam,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GW,Guinea-Bissau,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +GY,Guyana,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +HK,Hong Kong,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +HM,Heard Island and McDonald Islands,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +HN,Honduras,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +HR,Croatia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +HT,Haiti,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +HU,Hungary,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ID,Indonesia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IE,Ireland,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IL,Israel,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IM,Isle of Man,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IN,India,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IO,British Indian Ocean Territory (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IQ,Iraq,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IR,Iran (Islamic Republic of),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IS,Iceland,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +IT,Italy,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +JE,Jersey,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +JM,Jamaica,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +JO,Jordan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +JP,Japan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KE,Kenya,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KG,Kyrgyzstan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KH,Cambodia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KI,Kiribati,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KM,Comoros (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KN,Saint Kitts and Nevis,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KP,Korea (the Democratic People's Republic of),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KR,Korea (the Republic of),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KW,Kuwait,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KY,Cayman Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +KZ,Kazakhstan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LA,Lao People's Democratic Republic (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LB,Lebanon,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LC,Saint Lucia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LI,Liechtenstein,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LK,Sri Lanka,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LR,Liberia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LS,Lesotho,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LT,Lithuania,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LU,Luxembourg,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LV,Latvia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +LY,Libya,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MA,Morocco,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MC,Monaco,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MD,Moldova (the Republic of),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ME,Montenegro,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MF,Saint Martin (French part),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MG,Madagascar,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MH,Marshall Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MK,North Macedonia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ML,Mali,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MM,Myanmar,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MN,Mongolia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MO,Macao,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MP,Northern Mariana Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MQ,Martinique,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MR,Mauritania,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MS,Montserrat,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MT,Malta,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MU,Mauritius,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MV,Maldives,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MW,Malawi,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MX,Mexico,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MY,Malaysia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +MZ,Mozambique,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NA,Namibia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NC,New Caledonia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NE,Niger (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NF,Norfolk Island,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NG,Nigeria,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NI,Nicaragua,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NL,Netherlands (Kingdom of the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NO,Norway,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NP,Nepal,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NR,Nauru,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NU,Niue,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +NZ,New Zealand,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +OM,Oman,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PA,Panama,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PE,Peru,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PF,French Polynesia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PG,Papua New Guinea,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PH,Philippines (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PK,Pakistan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PL,Poland,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PM,Saint Pierre and Miquelon,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PN,Pitcairn,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PR,Puerto Rico,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PS,"Palestine, State of",,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PT,Portugal,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PW,Palau,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +PY,Paraguay,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +QA,Qatar,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +RE,RΓ©union,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +RO,Romania,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +RS,Serbia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +RU,Russian Federation (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +RW,Rwanda,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SA,Saudi Arabia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SB,Solomon Islands,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SC,Seychelles,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SD,Sudan (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SE,Sweden,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SG,Singapore,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SH,"Saint Helena, Ascension and Tristan da Cunha",,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SI,Slovenia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SJ,Svalbard and Jan Mayen,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SK,Slovakia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SL,Sierra Leone,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SM,San Marino,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SN,Senegal,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SO,Somalia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SR,Suriname,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SS,South Sudan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ST,Sao Tome and Principe,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SV,El Salvador,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SX,Sint Maarten (Dutch part),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SY,Syrian Arab Republic (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +SZ,Eswatini,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TC,Turks and Caicos Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TD,Chad,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TF,French Southern Territories (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TG,Togo,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TH,Thailand,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TJ,Tajikistan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TK,Tokelau,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TL,Timor-Leste,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TM,Turkmenistan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TN,Tunisia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TO,Tonga,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TR,TΓΌrkiye,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TT,Trinidad and Tobago,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TV,Tuvalu,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TW,Taiwan (Province of China),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +TZ,"Tanzania, the United Republic of",,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +UA,Ukraine,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +UG,Uganda,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +UM,United States Minor Outlying Islands (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +US,United States of America (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +UY,Uruguay,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +UZ,Uzbekistan,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +VA,Holy See (the),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +VC,Saint Vincent and the Grenadines,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +VE,Venezuela (Bolivarian Republic of),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +VG,Virgin Islands (British),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +VI,Virgin Islands (U.S.),,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +VN,Viet Nam,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +VU,Vanuatu,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +WF,Wallis and Futuna,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +WS,Samoa,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +YE,Yemen,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +YT,Mayotte,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ZA,South Africa,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ZM,Zambia,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, +ZW,Zimbabwe,,,FALSE,,Study Source Geography,,ISO3166 alpha2,,,,https://www.iso.org/obp/ui/#search,, From ace39ea91a367b98f3c2ddef677889fcf5228ebb Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 6 Mar 2025 17:36:05 -0800 Subject: [PATCH 034/106] Update studyLicense.csv Add additional licenses described in DUOplus6 --- modules/study/studyLicense.csv | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/modules/study/studyLicense.csv b/modules/study/studyLicense.csv index 194e80e1..70fd0b80 100644 --- a/modules/study/studyLicense.csv +++ b/modules/study/studyLicense.csv @@ -1,5 +1,7 @@ ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes -CC BY 3.0,http://creativecommons.org/licenses/by/3.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,,, -CC BY 4.0,https://creativecommons.org/licenses/by/4.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,,, -CC BY-NC 4.0,https://creativecommons.org/licenses/by-nc/4.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,,, -CC BY-NC 3.0,https://creativecommons.org/licenses/by-nc/3.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,,, +CC BY 3.0,http://creativecommons.org/licenses/by/3.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,http://creativecommons.org/licenses/by/3.0/,, +CC BY 4.0,https://creativecommons.org/licenses/by/4.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,https://creativecommons.org/licenses/by/4.0/,, +CC BY-NC 4.0,https://creativecommons.org/licenses/by-nc/4.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,https://creativecommons.org/licenses/by-nc/4.0/,, +CC BY-NC 3.0,https://creativecommons.org/licenses/by-nc/3.0/,,,FALSE,,Study License,,CDS v5.0.4/Image-license,,,,https://creativecommons.org/licenses/by-nc/3.0/,, +CC BY-SA 4.0,https://creativecommons.org/licenses/by-sa/4.0/,,,FALSE,,Study License,,DUOplus6,,,,https://creativecommons.org/licenses/by-sa/4.0/,,Identified as valid value here: https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md +CC BY-NC-SA 4.0,https://creativecommons.org/licenses/by-nc-sa/4.0/,,,FALSE,,Study License,,DUOplus6,,,,https://creativecommons.org/licenses/by-nc-sa/4.0/,,Identified as valid value here: https://github.com/Sage-Bionetworks/governanceDUO/blob/main/metadata%20structure.md From 281154dd3ddd5cb035e2ff05615cfb2583470598 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 10 Mar 2025 16:01:26 -0700 Subject: [PATCH 035/106] Run update_valid_values.py Add valid values to all_valid_values.csv and new Study attributes --- all_valid_values.csv | 259 +++++++++++++++++++++++++++ modules/study/annotationProperty.csv | 8 +- 2 files changed, 263 insertions(+), 4 deletions(-) diff --git a/all_valid_values.csv b/all_valid_values.csv index 47dfe52a..3088ed9e 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -10579,10 +10579,269 @@ studyLicense,CC BY 3.0, studyLicense,CC BY 4.0, studyLicense,CC BY-NC 4.0, studyLicense,CC BY-NC 3.0, +studyLicense,CC BY-SA 4.0, +studyLicense,CC BY-NC-SA 4.0, indexDate,Diagnosis Date , indexDate,Enrollment Date, indexDate,Collection Date, indexDate,Birth Date, +sourceGeography,AD, +sourceGeography,AE, +sourceGeography,AF, +sourceGeography,AG, +sourceGeography,AI, +sourceGeography,AL, +sourceGeography,AM, +sourceGeography,AO, +sourceGeography,AQ, +sourceGeography,AR, +sourceGeography,AS, +sourceGeography,AT, +sourceGeography,AU, +sourceGeography,AW, +sourceGeography,AX, +sourceGeography,AZ, +sourceGeography,BA, +sourceGeography,BB, +sourceGeography,BD, +sourceGeography,BE, +sourceGeography,BF, +sourceGeography,BG, +sourceGeography,BH, +sourceGeography,BI, +sourceGeography,BJ, +sourceGeography,BL, +sourceGeography,BM, +sourceGeography,BN, +sourceGeography,BO, +sourceGeography,BQ, +sourceGeography,BR, +sourceGeography,BS, +sourceGeography,BT, +sourceGeography,BV, +sourceGeography,BW, +sourceGeography,BY, +sourceGeography,BZ, +sourceGeography,CA, +sourceGeography,CC, +sourceGeography,CD, +sourceGeography,CF, +sourceGeography,CG, +sourceGeography,CH, +sourceGeography,CI, +sourceGeography,CK, +sourceGeography,CL, +sourceGeography,CM, +sourceGeography,CN, +sourceGeography,CO, +sourceGeography,CR, +sourceGeography,CU, +sourceGeography,CV, +sourceGeography,CW, +sourceGeography,CX, +sourceGeography,CY, +sourceGeography,CZ, +sourceGeography,DE, +sourceGeography,DJ, +sourceGeography,DK, +sourceGeography,DM, +sourceGeography,DO, +sourceGeography,DZ, +sourceGeography,EC, +sourceGeography,EE, +sourceGeography,EG, +sourceGeography,EH, +sourceGeography,ER, +sourceGeography,ES, +sourceGeography,ET, +sourceGeography,FI, +sourceGeography,FJ, +sourceGeography,FK, +sourceGeography,FM, +sourceGeography,FO, +sourceGeography,FR, +sourceGeography,GA, +sourceGeography,GB, +sourceGeography,GD, +sourceGeography,GE, +sourceGeography,GF, +sourceGeography,GG, +sourceGeography,GH, +sourceGeography,GI, +sourceGeography,GL, +sourceGeography,GM, +sourceGeography,GN, +sourceGeography,GP, +sourceGeography,GQ, +sourceGeography,GR, +sourceGeography,GS, +sourceGeography,GT, +sourceGeography,GU, +sourceGeography,GW, +sourceGeography,GY, +sourceGeography,HK, +sourceGeography,HM, +sourceGeography,HN, +sourceGeography,HR, +sourceGeography,HT, +sourceGeography,HU, +sourceGeography,ID, +sourceGeography,IE, +sourceGeography,IL, +sourceGeography,IM, +sourceGeography,IN, +sourceGeography,IO, +sourceGeography,IQ, +sourceGeography,IR, +sourceGeography,IS, +sourceGeography,IT, +sourceGeography,JE, +sourceGeography,JM, +sourceGeography,JO, +sourceGeography,JP, +sourceGeography,KE, +sourceGeography,KG, +sourceGeography,KH, +sourceGeography,KI, +sourceGeography,KM, +sourceGeography,KN, +sourceGeography,KP, +sourceGeography,KR, +sourceGeography,KW, +sourceGeography,KY, +sourceGeography,KZ, +sourceGeography,LA, +sourceGeography,LB, +sourceGeography,LC, +sourceGeography,LI, +sourceGeography,LK, +sourceGeography,LR, +sourceGeography,LS, +sourceGeography,LT, +sourceGeography,LU, +sourceGeography,LV, +sourceGeography,LY, +sourceGeography,MA, +sourceGeography,MC, +sourceGeography,MD, +sourceGeography,ME, +sourceGeography,MF, +sourceGeography,MG, +sourceGeography,MH, +sourceGeography,MK, +sourceGeography,ML, +sourceGeography,MM, +sourceGeography,MN, +sourceGeography,MO, +sourceGeography,MP, +sourceGeography,MQ, +sourceGeography,MR, +sourceGeography,MS, +sourceGeography,MT, +sourceGeography,MU, +sourceGeography,MV, +sourceGeography,MW, +sourceGeography,MX, +sourceGeography,MY, +sourceGeography,MZ, +sourceGeography,NA, +sourceGeography,NC, +sourceGeography,NE, +sourceGeography,NF, +sourceGeography,NG, +sourceGeography,NI, +sourceGeography,NL, +sourceGeography,NO, +sourceGeography,NP, +sourceGeography,NR, +sourceGeography,NU, +sourceGeography,NZ, +sourceGeography,OM, +sourceGeography,PA, +sourceGeography,PE, +sourceGeography,PF, +sourceGeography,PG, +sourceGeography,PH, +sourceGeography,PK, +sourceGeography,PL, +sourceGeography,PM, +sourceGeography,PN, +sourceGeography,PR, +sourceGeography,PS, +sourceGeography,PT, +sourceGeography,PW, +sourceGeography,PY, +sourceGeography,QA, +sourceGeography,RE, +sourceGeography,RO, +sourceGeography,RS, +sourceGeography,RU, +sourceGeography,RW, +sourceGeography,SA, +sourceGeography,SB, +sourceGeography,SC, +sourceGeography,SD, +sourceGeography,SE, +sourceGeography,SG, +sourceGeography,SH, +sourceGeography,SI, +sourceGeography,SJ, +sourceGeography,SK, +sourceGeography,SL, +sourceGeography,SM, +sourceGeography,SN, +sourceGeography,SO, +sourceGeography,SR, +sourceGeography,SS, +sourceGeography,ST, +sourceGeography,SV, +sourceGeography,SX, +sourceGeography,SY, +sourceGeography,SZ, +sourceGeography,TC, +sourceGeography,TD, +sourceGeography,TF, +sourceGeography,TG, +sourceGeography,TH, +sourceGeography,TJ, +sourceGeography,TK, +sourceGeography,TL, +sourceGeography,TM, +sourceGeography,TN, +sourceGeography,TO, +sourceGeography,TR, +sourceGeography,TT, +sourceGeography,TV, +sourceGeography,TW, +sourceGeography,TZ, +sourceGeography,UA, +sourceGeography,UG, +sourceGeography,UM, +sourceGeography,US, +sourceGeography,UY, +sourceGeography,UZ, +sourceGeography,VA, +sourceGeography,VC, +sourceGeography,VE, +sourceGeography,VG, +sourceGeography,VI, +sourceGeography,VN, +sourceGeography,VU, +sourceGeography,WF, +sourceGeography,WS, +sourceGeography,YE, +sourceGeography,YT, +sourceGeography,ZA, +sourceGeography,ZM, +sourceGeography,ZW, +dataPermission,Agreement, +dataPermission,Attestation, +dataPermission,Award, +dataPermission,Other, +dataTier,Anonymous, +dataTier,Open, +dataTier,Controlled, +dataTier,Private, tool_accessibility,Open Access, tool_accessibility,Open Access (With Restrictions), tool_accessibility,Restricted Access, diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index 5e6ff835..9e3d95ce 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -10,9 +10,9 @@ Study De-identification Method Type,General description of the de-identification Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str -Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, +Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,CDS/collection, Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, -Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,,,FALSE,,,,DUOplus,list like -Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,,,FALSE,,,,DUOplus,list like -Study Data Tier,The access tier(s) associated with the data in this study. Maps to DUOplus5.,,,FALSE,,,,DUOplus,list like +Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,DUOplus,list like +Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,"Agreement, Attestation, Award, Other",,FALSE,,,,DUOplus,list like +Study Data Tier,The access tier(s) associated with the data in this study. Maps to DUOplus5.,"Anonymous, Open, Controlled, Private",,FALSE,,,,DUOplus,list like From 267cdfee0366d9649d8d208f56c6224e1c109fe4 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 10 Mar 2025 16:02:04 -0700 Subject: [PATCH 036/106] Collate CSVs and convert to JSON-LD Collate model CSV and convert to JSON-LD with schematic 24.12.1 --- mc2.model.csv | 19 +- mc2.model.jsonld | 5082 +++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 5087 insertions(+), 14 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index c26899da..e19e7d15 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -455,20 +455,23 @@ DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License, Study Source Geography, Study Data Permission, Study Data Tier",FALSE,,,Grant View,, Study Name,Name of the study,,,TRUE,,,,,str -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.",,,TRUE,,,,,str Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,FALSE,,,,,str +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.",,,FALSE,,,,,str Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int -Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.,,,TRUE,,,,CDS/collection,int +Study De-identification Method Type,General description of the de-identification method. Maps to DUOplus3.,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str -Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str +Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str -Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like +Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,CDS/collection, +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, +Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,DUOplus,list like +Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,"Agreement, Attestation, Award, Other",,FALSE,,,,DUOplus,list like +Study Data Tier,The access tier(s) associated with the data in this study. Maps to DUOplus5.,"Anonymous, Open, Controlled, Private",,FALSE,,,,DUOplus,list like Theme,Themes associated with resources derived from consortia activities,,"Component, Theme Name, Theme Display Name, Theme Description",FALSE,,,,, Theme Name,"Machine readable name of the research theme. (e.g. compuational_resource, drug_resistance_sensitivity).",,,TRUE,,,,, Theme Display Name,"Human readable display name of the research theme. (e.g. Computational Resource, Drug Resistance/Sensitivity)",,,TRUE,,,,, diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 5c1b8dd5..048bb484 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -31485,6 +31485,9 @@ }, { "@id": "bts:IndividualTumorGrade" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -39345,6 +39348,9 @@ { "@id": "bts:ImageImmersionType" }, + { + "@id": "bts:StudyDataPermission" + }, { "@id": "bts:NGSReadIndicator" }, @@ -220914,6 +220920,15 @@ }, { "@id": "bts:StudyLicense" + }, + { + "@id": "bts:StudySourceGeography" + }, + { + "@id": "bts:StudyDataPermission" + }, + { + "@id": "bts:StudyDataTier" } ], "sms:validationRules": [] @@ -253995,6 +254010,9 @@ "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -254539,6 +254557,9 @@ "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -254743,6 +254764,9 @@ "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -281852,6 +281876,9 @@ "rdfs:subClassOf": [ { "@id": "bts:IndividualMetastasisStage" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -308337,6 +308364,9 @@ "rdfs:subClassOf": [ { "@id": "bts:NGSLibrarySelectionMethod" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -311346,6 +311376,9 @@ }, { "@id": "bts:StudyDataUseCodes" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -311461,6 +311494,9 @@ }, { "@id": "bts:StudyDataUseCodes" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -311668,6 +311704,9 @@ }, { "@id": "bts:StudyDataUseCodes" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -311714,6 +311753,9 @@ }, { "@id": "bts:StudyDataUseCodes" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -311737,6 +311779,9 @@ }, { "@id": "bts:StudyDataUseCodes" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -311812,6 +311857,9 @@ }, { "@id": "bts:ToolOutputFormat" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -315868,7 +315916,7 @@ { "@id": "bts:StudyDescription", "@type": "rdfs:Class", - "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, etc.", + "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.", "rdfs:label": "StudyDescription", "rdfs:subClassOf": [ { @@ -315906,7 +315954,7 @@ { "@id": "bts:StudyNumberofParticipants", "@type": "rdfs:Class", - "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject.", + "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.", "rdfs:label": "StudyNumberofParticipants", "rdfs:subClassOf": [ { @@ -315925,7 +315973,7 @@ { "@id": "bts:StudyDe-identificationMethodType", "@type": "rdfs:Class", - "rdfs:comment": "General description of the de-identification method", + "rdfs:comment": "General description of the de-identification method. Maps to DUOplus3.", "rdfs:label": "StudyDe-identificationMethodType", "rdfs:subClassOf": [ { @@ -315975,7 +316023,7 @@ { "@id": "bts:StudyDe-identificationMethodSoftware", "@type": "rdfs:Class", - "rdfs:comment": "Software that was used to de-identify the images (if used)", + "rdfs:comment": "Software that was used to de-identify the data (if used)", "rdfs:label": "StudyDe-identificationMethodSoftware", "rdfs:subClassOf": [ { @@ -316025,7 +316073,7 @@ { "@id": "bts:StudyReuseStatement", "@type": "rdfs:Class", - "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).", + "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.", "rdfs:label": "StudyReuseStatement", "rdfs:subClassOf": [ { @@ -316137,7 +316185,7 @@ { "@id": "bts:StudyLicense", "@type": "rdfs:Class", - "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.", + "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.", "rdfs:label": "StudyLicense", "rdfs:subClassOf": [ { @@ -316159,12 +316207,852 @@ }, { "@id": "bts:CCBY-NC3.0" + }, + { + "@id": "bts:CCBY-SA4.0" + }, + { + "@id": "bts:CCBY-NC-SA4.0" } ], "sms:displayName": "Study License", "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:StudySourceGeography", + "@type": "rdfs:Class", + "rdfs:comment": "The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.", + "rdfs:label": "StudySourceGeography", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:AD" + }, + { + "@id": "bts:AE" + }, + { + "@id": "bts:AF" + }, + { + "@id": "bts:AG" + }, + { + "@id": "bts:AI" + }, + { + "@id": "bts:AL" + }, + { + "@id": "bts:AM" + }, + { + "@id": "bts:AO" + }, + { + "@id": "bts:AQ" + }, + { + "@id": "bts:AR" + }, + { + "@id": "bts:AS" + }, + { + "@id": "bts:AT" + }, + { + "@id": "bts:AU" + }, + { + "@id": "bts:AW" + }, + { + "@id": "bts:AX" + }, + { + "@id": "bts:AZ" + }, + { + "@id": "bts:BA" + }, + { + "@id": "bts:BB" + }, + { + "@id": "bts:BD" + }, + { + "@id": "bts:BE" + }, + { + "@id": "bts:BF" + }, + { + "@id": "bts:BG" + }, + { + "@id": "bts:BH" + }, + { + "@id": "bts:BI" + }, + { + "@id": "bts:BJ" + }, + { + "@id": "bts:BL" + }, + { + "@id": "bts:BM" + }, + { + "@id": "bts:BN" + }, + { + "@id": "bts:BO" + }, + { + "@id": "bts:BQ" + }, + { + "@id": "bts:BR" + }, + { + "@id": "bts:BS" + }, + { + "@id": "bts:BT" + }, + { + "@id": "bts:BV" + }, + { + "@id": "bts:BW" + }, + { + "@id": "bts:BY" + }, + { + "@id": "bts:BZ" + }, + { + "@id": "bts:CA" + }, + { + "@id": "bts:CC" + }, + { + "@id": "bts:CD" + }, + { + "@id": "bts:CF" + }, + { + "@id": "bts:CG" + }, + { + "@id": "bts:CH" + }, + { + "@id": "bts:CI" + }, + { + "@id": "bts:CK" + }, + { + "@id": "bts:CL" + }, + { + "@id": "bts:CM" + }, + { + "@id": "bts:CN" + }, + { + "@id": "bts:CO" + }, + { + "@id": "bts:CR" + }, + { + "@id": "bts:CU" + }, + { + "@id": "bts:CV" + }, + { + "@id": "bts:CW" + }, + { + "@id": "bts:CX" + }, + { + "@id": "bts:CY" + }, + { + "@id": "bts:CZ" + }, + { + "@id": "bts:DE" + }, + { + "@id": "bts:DJ" + }, + { + "@id": "bts:DK" + }, + { + "@id": "bts:DM" + }, + { + "@id": "bts:DO" + }, + { + "@id": "bts:DZ" + }, + { + "@id": "bts:EC" + }, + { + "@id": "bts:EE" + }, + { + "@id": "bts:EG" + }, + { + "@id": "bts:EH" + }, + { + "@id": "bts:ER" + }, + { + "@id": "bts:ES" + }, + { + "@id": "bts:ET" + }, + { + "@id": "bts:FI" + }, + { + "@id": "bts:FJ" + }, + { + "@id": "bts:FK" + }, + { + "@id": "bts:FM" + }, + { + "@id": "bts:FO" + }, + { + "@id": "bts:FR" + }, + { + "@id": "bts:GA" + }, + { + "@id": "bts:GB" + }, + { + "@id": "bts:GD" + }, + { + "@id": "bts:GE" + }, + { + "@id": "bts:GF" + }, + { + "@id": "bts:GG" + }, + { + "@id": "bts:GH" + }, + { + "@id": "bts:GI" + }, + { + "@id": "bts:GL" + }, + { + "@id": "bts:GM" + }, + { + "@id": "bts:GN" + }, + { + "@id": "bts:GP" + }, + { + "@id": "bts:GQ" + }, + { + "@id": "bts:GR" + }, + { + "@id": "bts:GS" + }, + { + "@id": "bts:GT" + }, + { + "@id": "bts:GU" + }, + { + "@id": "bts:GW" + }, + { + "@id": "bts:GY" + }, + { + "@id": "bts:HK" + }, + { + "@id": "bts:HM" + }, + { + "@id": "bts:HN" + }, + { + "@id": "bts:HR" + }, + { + "@id": "bts:HT" + }, + { + "@id": "bts:HU" + }, + { + "@id": "bts:ID" + }, + { + "@id": "bts:IE" + }, + { + "@id": "bts:IL" + }, + { + "@id": "bts:IM" + }, + { + "@id": "bts:IN" + }, + { + "@id": "bts:IO" + }, + { + "@id": "bts:IQ" + }, + { + "@id": "bts:IR" + }, + { + "@id": "bts:IS" + }, + { + "@id": "bts:IT" + }, + { + "@id": "bts:JE" + }, + { + "@id": "bts:JM" + }, + { + "@id": "bts:JO" + }, + { + "@id": "bts:JP" + }, + { + "@id": "bts:KE" + }, + { + "@id": "bts:KG" + }, + { + "@id": "bts:KH" + }, + { + "@id": "bts:KI" + }, + { + "@id": "bts:KM" + }, + { + "@id": "bts:KN" + }, + { + "@id": "bts:KP" + }, + { + "@id": "bts:KR" + }, + { + "@id": "bts:KW" + }, + { + "@id": "bts:KY" + }, + { + "@id": "bts:KZ" + }, + { + "@id": "bts:LA" + }, + { + "@id": "bts:LB" + }, + { + "@id": "bts:LC" + }, + { + "@id": "bts:LI" + }, + { + "@id": "bts:LK" + }, + { + "@id": "bts:LR" + }, + { + "@id": "bts:LS" + }, + { + "@id": "bts:LT" + }, + { + "@id": "bts:LU" + }, + { + "@id": "bts:LV" + }, + { + "@id": "bts:LY" + }, + { + "@id": "bts:MA" + }, + { + "@id": "bts:MC" + }, + { + "@id": "bts:MD" + }, + { + "@id": "bts:ME" + }, + { + "@id": "bts:MF" + }, + { + "@id": "bts:MG" + }, + { + "@id": "bts:MH" + }, + { + "@id": "bts:MK" + }, + { + "@id": "bts:ML" + }, + { + "@id": "bts:MM" + }, + { + "@id": "bts:MN" + }, + { + "@id": "bts:MO" + }, + { + "@id": "bts:MP" + }, + { + "@id": "bts:MQ" + }, + { + "@id": "bts:MR" + }, + { + "@id": "bts:MS" + }, + { + "@id": "bts:MT" + }, + { + "@id": "bts:MU" + }, + { + "@id": "bts:MV" + }, + { + "@id": "bts:MW" + }, + { + "@id": "bts:MX" + }, + { + "@id": "bts:MY" + }, + { + "@id": "bts:MZ" + }, + { + "@id": "bts:NA" + }, + { + "@id": "bts:NC" + }, + { + "@id": "bts:NE" + }, + { + "@id": "bts:NF" + }, + { + "@id": "bts:NG" + }, + { + "@id": "bts:NI" + }, + { + "@id": "bts:NL" + }, + { + "@id": "bts:NO" + }, + { + "@id": "bts:NP" + }, + { + "@id": "bts:NR" + }, + { + "@id": "bts:NU" + }, + { + "@id": "bts:NZ" + }, + { + "@id": "bts:OM" + }, + { + "@id": "bts:PA" + }, + { + "@id": "bts:PE" + }, + { + "@id": "bts:PF" + }, + { + "@id": "bts:PG" + }, + { + "@id": "bts:PH" + }, + { + "@id": "bts:PK" + }, + { + "@id": "bts:PL" + }, + { + "@id": "bts:PM" + }, + { + "@id": "bts:PN" + }, + { + "@id": "bts:PR" + }, + { + "@id": "bts:PS" + }, + { + "@id": "bts:PT" + }, + { + "@id": "bts:PW" + }, + { + "@id": "bts:PY" + }, + { + "@id": "bts:QA" + }, + { + "@id": "bts:RE" + }, + { + "@id": "bts:RO" + }, + { + "@id": "bts:RS" + }, + { + "@id": "bts:RU" + }, + { + "@id": "bts:RW" + }, + { + "@id": "bts:SA" + }, + { + "@id": "bts:SB" + }, + { + "@id": "bts:SC" + }, + { + "@id": "bts:SD" + }, + { + "@id": "bts:SE" + }, + { + "@id": "bts:SG" + }, + { + "@id": "bts:SH" + }, + { + "@id": "bts:SI" + }, + { + "@id": "bts:SJ" + }, + { + "@id": "bts:SK" + }, + { + "@id": "bts:SL" + }, + { + "@id": "bts:SM" + }, + { + "@id": "bts:SN" + }, + { + "@id": "bts:SO" + }, + { + "@id": "bts:SR" + }, + { + "@id": "bts:SS" + }, + { + "@id": "bts:ST" + }, + { + "@id": "bts:SV" + }, + { + "@id": "bts:SX" + }, + { + "@id": "bts:SY" + }, + { + "@id": "bts:SZ" + }, + { + "@id": "bts:TC" + }, + { + "@id": "bts:TD" + }, + { + "@id": "bts:TF" + }, + { + "@id": "bts:TG" + }, + { + "@id": "bts:TH" + }, + { + "@id": "bts:TJ" + }, + { + "@id": "bts:TK" + }, + { + "@id": "bts:TL" + }, + { + "@id": "bts:TM" + }, + { + "@id": "bts:TN" + }, + { + "@id": "bts:TO" + }, + { + "@id": "bts:TR" + }, + { + "@id": "bts:TT" + }, + { + "@id": "bts:TV" + }, + { + "@id": "bts:TW" + }, + { + "@id": "bts:TZ" + }, + { + "@id": "bts:UA" + }, + { + "@id": "bts:UG" + }, + { + "@id": "bts:UM" + }, + { + "@id": "bts:US" + }, + { + "@id": "bts:UY" + }, + { + "@id": "bts:UZ" + }, + { + "@id": "bts:VA" + }, + { + "@id": "bts:VC" + }, + { + "@id": "bts:VE" + }, + { + "@id": "bts:VG" + }, + { + "@id": "bts:VI" + }, + { + "@id": "bts:VN" + }, + { + "@id": "bts:VU" + }, + { + "@id": "bts:WF" + }, + { + "@id": "bts:WS" + }, + { + "@id": "bts:YE" + }, + { + "@id": "bts:YT" + }, + { + "@id": "bts:ZA" + }, + { + "@id": "bts:ZM" + }, + { + "@id": "bts:ZW" + } + ], + "sms:displayName": "Study Source Geography", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:StudyDataPermission", + "@type": "rdfs:Class", + "rdfs:comment": "The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.", + "rdfs:label": "StudyDataPermission", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Agreement" + }, + { + "@id": "bts:Attestation" + }, + { + "@id": "bts:Award" + }, + { + "@id": "bts:Other" + } + ], + "sms:displayName": "Study Data Permission", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:StudyDataTier", + "@type": "rdfs:Class", + "rdfs:comment": "The access tier(s) associated with the data in this study. Maps to DUOplus5.", + "rdfs:label": "StudyDataTier", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Anonymous" + }, + { + "@id": "bts:Open" + }, + { + "@id": "bts:Controlled" + }, + { + "@id": "bts:Private" + } + ], + "sms:displayName": "Study Data Tier", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, { "@id": "bts:Manual", "@type": "rdfs:Class", @@ -316284,6 +317172,40 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:CCBY-SA4.0", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CCBY-SA4.0", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyLicense" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CC BY-SA 4.0", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CCBY-NC-SA4.0", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CCBY-NC-SA4.0", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyLicense" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CC BY-NC-SA 4.0", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:DiagnosisDate", "@type": "rdfs:Class", @@ -316352,6 +317274,4154 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:AD", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AD", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AD", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AE", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AE", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AE", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AF", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AF", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AF", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AG", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AG", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AG", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AI", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AI", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AI", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AL", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AL", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AL", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AM", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AM", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AM", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AO", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AO", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AO", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AQ", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AQ", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AQ", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AR", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AR", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AR", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AS", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AT", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AT", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AT", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AW", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AW", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AW", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AX", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AX", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AX", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AZ", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AZ", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AZ", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BA", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BB", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BB", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BB", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BD", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BD", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BD", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BE", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BE", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BE", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BF", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BF", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BF", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BG", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BG", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BG", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BH", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BH", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BH", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BI", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BI", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BI", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BJ", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BJ", + 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"sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UM", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UM", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "UM", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UY", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UY", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "UY", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UZ", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UZ", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "UZ", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VA", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VC", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VC", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VC", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VE", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VE", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VE", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VG", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VG", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VG", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VI", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VI", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VI", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VN", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VN", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VN", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VU", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VU", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VU", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:WF", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "WF", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "WF", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:WS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "WS", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "WS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:YE", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "YE", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "YE", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:YT", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "YT", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "YT", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ZA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ZA", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ZA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ZM", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ZM", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ZM", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ZW", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ZW", + "rdfs:subClassOf": [ + { + "@id": "bts:StudySourceGeography" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ZW", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Agreement", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Agreement", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyDataPermission" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Agreement", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Attestation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Attestation", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyDataPermission" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Attestation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Award", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Award", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyDataPermission" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Award", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Anonymous", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Anonymous", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Anonymous", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Open", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Open", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Open", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Controlled", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Controlled", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Controlled", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Private", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Private", + "rdfs:subClassOf": [ + { + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Private", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Theme", "@type": "rdfs:Class", From 23f24261795517d47fdc23c2927be68937e6ebfa Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 10 Mar 2025 16:25:16 -0700 Subject: [PATCH 037/106] Update Study Data Use Codes description --- mc2.model.jsonld | 2 +- modules/study/annotationProperty.csv | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 048bb484..65049ac8 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -316092,7 +316092,7 @@ { "@id": "bts:StudyDataUseCodes", "@type": "rdfs:Class", - "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", + "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", "rdfs:label": "StudyDataUseCodes", "rdfs:subClassOf": [ { diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index 9e3d95ce..a63a52f6 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -11,7 +11,7 @@ Study De-identification Method Description,Description of the process of removin Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,CDS/collection, -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,DUOplus,list like Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,"Agreement, Attestation, Award, Other",,FALSE,,,,DUOplus,list like From 86ecf4ff67b7b565f75c04fc72fc1f8f89622dab Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 10 Mar 2025 17:31:43 -0700 Subject: [PATCH 038/106] Delete mc2.DatasetView.schema.json --- json_schemas/mc2.DatasetView.schema.json | 966 ----------------------- 1 file changed, 966 deletions(-) delete mode 100644 json_schemas/mc2.DatasetView.schema.json diff --git a/json_schemas/mc2.DatasetView.schema.json b/json_schemas/mc2.DatasetView.schema.json deleted file mode 100644 index 7088d3b2..00000000 --- a/json_schemas/mc2.DatasetView.schema.json +++ /dev/null @@ -1,966 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/DatasetView_validation", - "title": "DatasetView_validation", - "type": "object", - "properties": { - "Study Key": { - "type": "string", - "title": "StudyKey", - "description": "The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components." - }, - "PublicationView Key": { - "type": "string", - "title": "PublicationViewKey", - "description": "Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection." - }, - "GrantView Key": { - "type": "string", - "title": "GrantViewKey", - "description": "Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection." - }, - "Dataset File Formats": { - "type": "array", - "items": { - "enum": [ - "PNG", - "MTX", - "VCF", - "TIFF", - "PKL", - "MGF", - "SGI", - "HTML", - "mzXML", - "WIG", - "GCT", - "mzIdentML", - "ROUT", - "BPM", - "MAP", - "MAT", - "CDS", - "H5AD", - "MATLAB script", - "DS_Store", - "SRA", - "BAM", - "RPROJ", - "maf", - "xls", - "GCG", - "IDAT", - "unspecified", - "cel", - "BAI", - "SF", - "BIGWIG", - "JPG", - "GTF", - "PZFX", - "cloupe", - "rcc", - "FREQ", - "COOL", - "Pending Annotation", - "JSON", - "CLS", - "PDF", - "bed12", - "SCN", - "FASTQ", - "GCTx", - "LIF", - "HDF", - "DB", - "MSF", - "pptx", - "Python Script", - "TSV", - "FASTA", - "XML", - "CHP", - "DAE", - "RAW", - "BED", - "docx", - "bedgraph", - "FIG", - "TAR Format", - "HDF5", - "R File Format", - "FCS", - "GFF3", - "TXT", - "STAT", - "H5", - "AVI", - "RTF", - "TDF", - "RDS", - "GZIP Format", - "CSV", - "xlsx", - "ZIP", - "SVS", - "" - ] - } - }, - "Dataset Design": { - "type": "string", - "title": "DatasetDesign", - "description": "The overall design of the dataset.", - "maxLength": 500 - }, - "Dataset Name": { - "not": { - "type": "null" - }, - "type": "string", - "title": "DatasetName", - "description": "Name of the dataset.", - "maxLength": 250 - }, - "Data Use Codes": { - "type": "array", - "title": "DataUseCodes", - "description": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes", - "items": { - "enum": [ - "US", - "NPU", - "PS", - "RS", - "CC", - "POA", - "PUB", - "TS", - "NPUNCU", - "DUM", - "NMDS", - "DS", - "GSO", - "IRB", - "IS", - "RTN", - "NPOA", - "HMB", - "COL", - "NCU", - "GS", - "MOR", - "NRES", - "GRU", - "" - ] - } - }, - "Dataset Alias": { - "type": "string", - "title": "DatasetAlias", - "description": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345 or the dataset Synapse Id", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Url": { - "type": "string", - "title": "DatasetUrl", - "description": "The url of where the dataset is stored.", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Assay": { - "type": "array", - "title": "DatasetAssay", - "description": "The assay(s) the dataset is representative of.", - "items": { - "enum": [ - "3C-qPCR", - "Fluorescence Recovery After Photo-Bleaching", - "TCR Sequencing", - "Organoid", - "Cell Viability Assay", - "DNA Sequencing", - "Time Lapse Microscopy", - "Thin-Layer Chromatography", - "Energy-Dispersive X-Ray Spectroscopy", - "Cross-Linking Mass Spectrometry", - "Global Run-On Sequencing", - "ImmunoFISH", - "RT-qPCR", - "Data Integration", - "FAIRE-Seq", - "Immunotherapy", - "In Vitro Model", - "Not Applicable", - "Immunohistochemistry Staining Method", - "Computational Modeling", - "Metabolite Profiling Assay", - "Stimulated Raman Scattering", - "Cryo-Electron Microscopy", - "Monolayer Stress Microscopy", - "Ultrasound Imaging", - "Stimulated Emission Depletion Microscopy", - "Single Molecule Forster Resonance Energy Transfer", - "Questionnaire", - "Sirius Red Staining", - "Micropipette Aspiration", - "Confocal Microscopy", - "DBiT-Seq", - "qPCR", - "Dideoxy Chain Termination DNA Sequencing", - "unspecified", - "Positron Emission Tomography", - "Single Cell Gel Electrophoresis", - "Statistical Modeling", - "Targeted Therapy Agent", - "Gene Ontology Enrichment Analysis", - "RIP", - "Cytometric Bead Array Assay", - "Stochastic Optical Reconstruction Microscopy", - "In Vivo Bioluminescence", - "Apoptosis Assay", - "Nanowire", - "Dynamic Light Scattering", - "Synaptophysin Staining Method", - "Multiscale Light Sheet Microscopy", - "Chimeric Antigen Receptor T-Cell Therapy", - "MEMA Cell Growth Assay", - "Chemotaxis Assay", - "Patient Derived Xenograft", - "Tiling Array", - "Phagocytosis Assay", - "Southern Blotting", - "Tissue Engineering", - "PET-CT", - "Pending Annotation", - "Brillouin Microscopy", - "Multiplexed Ion Beam Imaging", - "Co-Immunoprecipitation", - "Clonality Analysis", - "Bio-Layer Interferometry", - "Shotgun Mass Spectrometry", - "scNT-Seq", - "Micropipette Adhesion Assay", - "Super-Resolution Microscopy", - "Cell Proliferation Assay", - "Single-Cell BCR Sequencing", - "Collision-Induced Dissociation", - "TRAP Staining", - "Proteomics Assay", - "Direct Long-Read RNA Sequencing", - "Lattice Light Sheet Microscopy", - "X-Ray Crystallography", - "ChIA-PET", - "Electron Microscopy", - "HiChIP", - "Cytochemical Stain", - "Fluorescent In Situ Sequencing", - "Xenograft", - "ChIP-PCR", - "smRNA-seq", - "Desorption Electrospray Ionization", - "RNAi Screen", - "Single Nucleus RNA-Sequencing", - "Global Chromatin Profiling", - "Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture", - "Fluorescence Activated Cell Sorting", - "mRNA Sequencing", - "CASFISH", - "Alcian Blue Staining Method", - "Dark Field Microscopy", - "Western Blotting", - "TUNEL assay", - "Tandem Mass Tagging", - "Second-Harmonic Imaging Microscopy", - "Inductively-Coupled Plasma Mass Spectrometry", - "Dye Endocytosis Assay", - "Brightfield Microscopy", - "Gene Set Enrichment Analysis", - "Enzyme-Linked Immunospot Assay", - "Single-Molecule Tracking", - "Affinity Purification Mass Spectrometry", - "Light Sheet Microscopy", - "Gene Silencing", - "Ribo-Seq", - "5C", - "Endotoxin Assay", - "MNase-Seq", - "3' RNA-seq", - "smFISH", - "Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging", - "Precision Run-On Sequencing", - "Tuba-Seq", - "Electron Diffraction", - "Wound-Healing Assay", - "Multiplexed Immunofluorescence", - "Single Cell RNA-Sequencing", - "Synthesis", - "Mint-ChIP", - "Graphite Furnace Atomic Absorption Spectrometry", - "Optical Coherence Tomography", - "Reverse Phase Protein Array", - "Size Exclusion Chromatography", - "seqFISH", - "ChIP-qPCR assay", - "Flow Cytometry", - "Small-Angle X-ray Scattering", - "Autoradiography", - "Optogenetic Assay", - "FISH", - "Scratch Assay", - "Optical Tweezers", - "10x Multiome", - "Nanopatterning", - "DNA Methylation Array", - "DRIP-seq", - "Single-Molecule Localization Microscopy", - "Interference Reflection Microscopy", - "Traction Force Microscopy", - "Whole Genome Sequencing", - "Total Internal Reflection Fluorescence Microscopy", - "Next Generation Sequencing", - "Photoacoustic Imaging", - "ELISA", - "ATP Bioluminescence Assay", - "Transcription profiling by NanoString", - "Droplet Digital PCR", - "Cross-Linking Immunoprecipitation High-throughput Sequencing", - "Multiparametric Magnetic Resonance Imaging", - "CUT&Tag-Sequencing", - "High Throughput Screening", - "Mammosphere Formation Assay", - "Immunoprecipitation", - "Optical Stretcher", - "Multiphoton Microscopy", - "QFISH", - "MALDI-TOF Mass Spectrometry", - "High-Content Screen", - "Artificial Intelligence", - "Cell Fractionation", - "Partial Wave Spectroscopy", - "Targeted Error Correction Sequencing", - "Microfluidics", - "Clinical Study", - "Whole Exome Sequencing", - "Barcode-Seq", - "Image Cytometry", - "Cell Adhesion Assay", - "Surface Plasmon Resonance", - "Hydrogels", - "Label-free Protein Quantification by LC/MS", - "Cell Culture", - "Gelatin Zymography", - "Structural Variant Analysis", - "RNA Sequencing", - "Viral Transduction", - "3D Cell Culture", - "Bisulfite Sequencing", - "TAB-Seq", - "Reporter Gene Assay", - "Angiogenesis Assay", - "Mass Spectrometry", - "CUT&RUN", - "Amplicon Sequencing", - "Magnetic Resonance Imaging", - "Picrosirius Staining", - "Targeted Genome Sequencing", - "Immunoassay", - "RIP-Seq", - "Spectroscopy", - "Raman Spectroscopy", - "4C", - "Point Accumulation for Imaging in Nanoscale Topography", - "Von Kossa Staining", - "Differential Scanning Fluorimetry", - "Murine Model", - "In Vitro Translation", - "Reverse-Phase High-Performance liquid Chromatography", - "Cell-free Circulating Tumor DNA Assay", - "Nano-hmC-Seal", - "In Vitro Cell Killing Assay", - "PlateSeq", - "Atomic Force Microscopy", - "Rheometry", - "Tissue Microarray", - "Whole Genome Bisulfite Sequencing", - "Microcontact Printing", - "Plasmid Construction", - "Circular Dichroism Spectroscopy", - "Transmission Electron Microscopy", - "Low-Vacuum Scanning Electron Microscopy", - "Paraquat Survival Assay", - "Magnetic Tweezers", - "Drop-Seq", - "MULTI-Seq", - "Computed Tomography", - "Electrophoretic Mobility Shift Assay", - "Co-Immunoprecipitation Mass Spectrometry", - "Magnetically Activated Cell Sorting", - "CellTiter-Glo Luminescent Cell Viability Assay", - "Widefield Fluorescence Microscopy", - "Liquid Chromatography Mass Spectrometry", - "Mathematical Modeling", - "Genotyping", - "Ribosomal P Protein Antibody Measurement", - "Scanning Electron Microscopy", - "SDS-PAGE", - "HPLC-MSMS", - "Fluorescence Correlation Spectroscopy", - "Allograft", - "Optical Mapping", - "Visium Spatial Gene Expression", - "Karyotyping", - "Methylation-Specific PCR", - "Deep Mutational Scanning", - "Fluorescent Cell Barcoding", - "Hydrophilic Interaction Chromatography", - "Single Nucleotide Polymorphism Array", - "In Situ Hybridization", - "3D Bioprinting", - "Efferocytosis Assay", - "Luminescent Cell Viability Assay", - "Differential Interference Contrast Microscopy", - "Hematoxylin and Eosin Staining Method", - "Proximity Ligation Assay", - "Fluorescent Antibody Procedure", - "Fourier-Transform Infrared Spectroscopy", - "TIRF Microscopy", - "Forster Resonance Energy Transfer", - "UPLC-MSMS", - "Immobilized Metal Affinity Chromatography", - "Single-Cell Barcode Chip", - "ATAC-Seq", - "Cell-spreading Assay", - "CRISPR", - "siRNA", - "Metastatic Colonization Assay", - "cDNA Array", - "RAS Protein Family Activation Assay", - "Cyclic Immunofluorescence", - "Cerenkov Luminescence Imaging", - "Immunocytochemistry", - "Atomic Absorption Spectroscopy", - "Quantitative Point Accumulation for Imaging in Nanoscale Topography", - "Co-culture Assay", - "Bioluminescence Imaging", - "CLIP-qPCR", - "Phylogenetic Analysis", - "Virus Plaque Assay", - "Single Cell DNA Sequencing", - "3C", - "Migration Assay", - "In-Cell Western Assay", - "Fluorescence Lifetime Imaging Microscopy", - "Macrophage Polarization Assay", - "Knife-Edge Scanning Microscopy", - "Permeability Assay", - "Multi-Angle Light Scattering", - "L1000 mRNA Profiling Assay", - "Molecular Simulations", - "Reduced Representation Bisulfite Sequencing", - "Field-Emission Scanning Electron Microscopy", - "Bioelectrochemical Analysis", - "Optical Emission Spectroscopy", - "Confocal Reflectance Quantitative Phase Microscopy", - "imaging", - "MeRIP-Seq", - "Single Cell ATAC-Seq", - "10-cell RNA Sequencing", - "Trichrome Staining Method", - "scCGI-seq", - "Scanning Angle Interference Microscopy", - "Focused Ion Beam Scanning Electron Microscopy", - "Electron Paramagnetic Resonance Spectroscopy", - "Dynamic Contrast-Enhanced Magnetic Resonance Imaging", - "Transwell Assay", - "16S Ribosomal Gene Sequencing Assay", - "Modeling", - "In Vitro Selection", - "ChIP-Seq", - "Target Engagement Assay", - "Fluorescence Microscopy", - "Nested PCR", - "DNase-Seq", - "Epidemiological Method", - "CITE-seq", - "HL-Chip", - "Nuclear Magnetic Resonance", - "Single-Cell TCR Sequencing", - "Microscopy", - "Pull-Down Assay", - "Hi-C", - "Dynamic Force Spectroscopy", - "Multiplexed Error-Robust Fluorescence In Situ Hybridization", - "Invasion Assay", - "Cytokine Expression Profile", - "DNA Gene-Expression Microarray", - "Diffusion Weighted Imaging", - "Fluorescence Imaging", - "Gas Chromatography Mass Spectrometry", - "Nanopore Sequencing", - "Multi-Isotope Mass Spectrometry", - "MicroRNA Sequencing", - "X-Ray Micro-Computed Tomography", - "NanoString Digital Spatial Profiling", - "Suspended Microchannel Resonator", - "Antitumor Drug Screening Assay", - "RT-PCR", - "Quantitative Multiplex Immunofluorescence", - "Cryo-Electron Tomography", - "Cytotoxicity Assay", - "X-Ray Diffraction", - "Immunofluorescent Staining Method", - "Atomic Absorption Spectrophotometry", - "Imaging Mass Cytometry", - "Multiplexed Immunohistochemistry", - "Single Cell Cytokine Detection Chip Assay", - "MeDIP", - "snRNA-seq", - "Survival Analysis", - "Magnetic Twisting Cytometry", - "Tandem Mass Spectrometry", - "Isothermal Titration Calorimetry", - "Mass Cytometry", - "Soft Agar Assay", - "MicroRNA Expression Array", - "Nm-seq", - "Liquid Chromatography/Tandem Mass Spectrometry", - "Deep Learning", - "Chemiluminescent Assay", - "Luciferase Reporter Assay", - "Dual-Luciferase Reporter Assay", - "Thermal Shift Assay", - "Time-Correlated Single Photon Counting", - "Photolithography", - "eCLIP-Seq", - "Comparative Genomic Hybridization", - "Surveyor Nuclease Assay", - "UV Photocrosslinking", - "Micro-computed Tomography", - "Colorimetric Cell Viability Assay", - "Intravital Microscopy", - "Enzyme Activity Assay", - "Methyl Binding Domain Sequencing", - "Cell Cycle Assay", - "scSLAM-seq", - "Vibrational Spectroscopy", - "shRNA", - "Bicinchoninic Acid Assay", - "Computational Tool", - "Fourier Transform Ion Cyclotron Resonance Mass Spectrometry", - "Electrospray Ionization Time-of-Flight Mass Spectrometry", - "PCR", - "Targeted Transcriptome Sequencing", - "Binding Assay", - "Synthetic Genetic Array" - ] - } - }, - "Dataset Description": { - "type": "string", - "title": "DatasetDescription", - "description": "Text description of the dataset.", - "maxLength": 500 - }, - "DatasetView_id": { - "type": "string", - "title": "DatasetViewid", - "description": "A unique primary key that enables record updates using schematic", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Species": { - "type": "array", - "title": "DatasetSpecies", - "description": "The species the data was collected on.", - "items": { - "enum": [ - "Boar", - "Mouse", - "Sheep", - "Asian Elephant", - "Rabbit", - "Multispecies", - "Cow", - "Human", - "Cat", - "Human Cell Line", - "Guinea Pig", - "unspecified", - "Opossum", - "Armadillo", - "Fruit Fly", - "Dog", - "Horse", - "Trichoplax adhaerens", - "Chicken", - "Escherichia coli", - "Human Patient", - "Rat", - "unknown", - "Yeast", - "Rhesus monkey", - "Worm", - "Zebrafish", - "African Bush Elephant" - ] - } - }, - "Dataset Tumor Type": { - "type": "array", - "title": "DatasetTumorType", - "description": "The tumor type(s), if applicable, of the data collected on", - "items": { - "enum": [ - "Angiosarcoma", - "Glioblastoma", - "Ovarian Carcinoma", - "Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features", - "Precursor B-cell lymphoblastic leukemia", - "Primary Central Nervous System Lymphoma", - "Cutaneous T Cell Lymphoma", - "Giant Cell Tumor", - "Colorectal Adenoma", - "Neuroepithelial Neoplasm", - "Prostate Adenocarcinoma", - "Fibrolamellar Carcinoma", - "Rosette-Forming Glioneuronal Tumor", - "Non-Functioning Pituitary Gland Adenoma", - "Adenocarcinoma", - "Biliary Tract Carcinoma", - "Acinar Cell Carcinoma", - "Luminal A Breast Carcinoma", - "Malignant Pancreatic Neoplasm", - "Retinoblastoma", - "Gastric Adenocarcinoma", - "Lymphoma", - "B-Cell Non-Hodgkin Lymphoma", - "Pancreatic Neoplasm", - "Plexiform Neurofibroma", - "Mycosis Fungoides", - "Pituitary Gland Adenoma", - "Not Applicable", - "Cervical Neoplasm", - "Combined Hepatocellular Carcinoma and Cholangiocarcinoma", - "Bone Neoplasm", - "Thyroid Gland Carcinoma", - "Ductal Breast Carcinoma In Situ", - "Malignant Skin Neoplasm", - "Bladder Neoplasm", - "Carcinoma", - "Hodgkin Lymphoma", - "Leukemia", - "Colorectal Neoplasm", - "Ewing Sarcoma", - "Urothelial Carcinoma", - "Clear Cell Renal Cell Carcinoma", - "Malignant Peripheral Nerve Sheath Tumor", - "Basal-Like Breast Carcinoma", - "Pilocytic Astrocytoma", - "Craniopharyngioma", - "Basal Cell Neoplasm", - "Triple-Negative Breast Carcinoma", - "Ovarian Neoplasm", - "Rectal Adenocarcinoma", - "Uveal Neoplasm", - "Acute Monocytic Leukemia", - "Skin Carcinoma", - "Gastroesophageal Junction Adenocarcinoma", - "Multiple Myeloma", - "Oral Cavity Neoplasm", - "Gastrointestinal Stromal Neoplasm", - "Mantle Cell Lymphoma", - "Marginal Zone Lymphoma", - "Penile Carcinoma", - "T-Cell Lymphoma", - "Synovial Sarcoma", - "Malignant Neoplasm", - "Central Nervous System Cavernous Hemangioma", - "Fibrosarcoma", - "Prostate Carcinoma", - "Cerebellar Neoplasm", - "Ovarian Adenosarcoma", - "B Acute Lymphoblastic Leukemia", - "Head and Neck Neoplasm", - "Chronic Myeloid Leukemia", - "Diffuse Large B-Cell Lymphoma", - "Leiomyoma", - "Acute Myeloid Leukemia", - "Esophageal Adenocarcinoma", - "Meningioma", - "Malignant Genitourinary System Neoplasm", - "Myeloid Leukemia", - "Histiocytic Sarcoma", - "Oral Cavity Squamous Cell Carcinoma", - "Bladder Carcinoma", - "Not-Applicable", - "Gallbladder Carcinoma", - "Non-Hodgkin Lymphoma", - "Osteosarcoma", - "Myeloproliferative Neoplasm", - "Pancreatic Ductal Adenocarcinoma", - "Breast Carcinoma", - "Esophageal Carcinoma", - "Atypical Teratoid/Rhabdoid Tumor", - "Pan-cancer", - "Barrett Esophagus", - "Breast Neoplasm", - "Nasopharyngeal Carcinoma", - "Pending Annotation", - "Sinonasal Squamous Cell Carcinoma", - "Colorectal Adenocarcinoma", - "Choriocarcinoma", - "Carcinoma In Situ", - "Pancreatic Neuroendocrine Carcinoma", - "Endometrial Neoplasm", - "Ovarian Serous Adenocarcinoma", - "Pancreatic Adenocarcinoma", - "Lung Squamous Cell Carcinoma", - "Lung Non-Small Cell Carcinoma", - "Lymphoid Leukemia", - "Plexiform Schwannoma", - "Liver and Intrahepatic Bile Duct Neoplasm", - "Malignant Peritoneal Neoplasm", - "Astrocytoma", - "Lung Carcinoma", - "Schwannoma", - "Fibroepithelial Polyp", - "Intestinal Neoplasm", - "Testicular Embryonal Carcinoma", - "Kaposi Sarcoma", - "Follicular Lymphoma", - "Rhabdomyosarcoma", - "Pheochromocytoma", - "Hepatocellular Carcinoma", - "Esophageal Squamous Cell Carcinoma", - "Gastric Neoplasm", - "Cervical Carcinoma", - "Serous Tubal Intraepithelial Carcinoma", - "T Acute Lymphoblastic Leukemia", - "Cholangiocarcinoma", - "Colon Adenocarcinoma", - "Uterine Adenosarcoma", - "Soft Tissue Sarcoma", - "Central Nervous System Neoplasm", - "Gastric Carcinoma", - "Lung Adenocarcinoma", - "Colon Carcinoma", - "Myoepithelioma", - "Medulloblastoma", - "Cutaneous Melanoma", - "Invasive Ductal Breast Carcinoma", - "Prostate Neoplasm", - "Acute Lymphoblastic Leukemia", - "Neuroendocrine Neoplasm", - "Lung Small Cell Carcinoma", - "Uveal Melanoma", - "Brain Neoplasm", - "Skin Neoplasm", - "Malignant Digestive System Neoplasm", - "Malignant Glioma", - "Dysembryoplastic Neuroepithelial Neoplasm", - "Castration-Resistant Prostate Carcinoma", - "Colorectal Carcinoma", - "Liver and Intrahepatic Bile Duct Carcinoma", - "Glioma", - "Neurofibroma", - "Primary Myelofibrosis", - "Plasmablastic Lymphoma", - "Head and Neck Squamous Cell Carcinoma", - "Neuroblastoma", - "Lung Neoplasm", - "Melanoma", - "Thyroid Gland Anaplastic Carcinoma", - "Cervical Small Cell Carcinoma", - "Ependymoma", - "Sarcoma", - "Gastroesophageal Adenocarcinoma", - "Acute Promyelocytic Leukemia", - "Pancreatic Carcinoma", - "Low Grade Glioma", - "Mesothelioma", - "High Grade Ovarian Serous Adenocarcinoma", - "Malignant Ovarian Neoplasm", - "Head and Neck Carcinoma", - "Cellular Schwannoma", - "Oropharyngeal Neoplasm", - "Teratoma", - "Breast Adenocarcinoma", - "Chondroblastoma", - "Intrahepatic Cholangiocarcinoma", - "Chronic Lymphocytic Leukemia", - "Vascular Neoplasm", - "Endometrial Carcinoma", - "Myeloid Neoplasm", - "Extraventricular Neurocytoma", - "Salivary Gland Adenoid Cystic Carcinoma", - "Plasmacytoma", - "Squamous Cell Carcinoma", - "Renal Cell Carcinoma", - "Malignant Brain Neoplasm", - "" - ] - } - }, - "Dataset Tissue": { - "type": "array", - "title": "DatasetTissue", - "description": "Tissue type(s) associated with the dataset", - "items": { - "enum": [ - "Cervix Uteri", - "Vascular Endothelium", - "Thymus", - "Tongue", - "Hippocampus", - "Stomach", - "Frontal Lobe", - "Colon", - "Pleura", - "Pelvic Lymph Nodes", - "Heart", - "Pharynx", - "Intestine", - "Connective and Soft Tissue", - "Lymph Nodes of Axilla or Arm", - "Gastroesophageal Junction", - "Fallopian Tube", - "Vagina", - "Not Applicable", - "Liver", - "Duodenum", - "Epithelium", - "Ligament", - "Joint", - "Pituitary Gland", - "Lymph Nodes of Inguinal Region or Leg", - "Heart Muscle", - "Pancreas", - "Omentum", - "Ovary", - "Lymph", - "Lung", - "Reproductive System", - "Placenta", - "Adipose Tissue", - "Mucosa", - "Cancer-Associated Fibroblast", - "Embryo", - "Intrathoracic Lymph Nodes", - "Alveolus", - "unspecified", - "Meninges", - "Hematopoietic System", - "Small Intestine", - "Olfactory Mucosa", - "Spinal Cord", - "Blood", - "Mesenchyme", - "Ascending Colon", - "Ear", - "Bladder", - "Cartilage", - "Rectum", - "Vertebra", - "Head and Neck", - "Endometrium", - "Gastrointestinal Tract", - "Choroid", - "Caecum", - "Pending Annotation", - "Embryonic Heart", - "Mammary Gland", - "Adrenal Gland", - "Lymphatic System", - "Intra-Abdominal Lymph Nodes", - "Abdominal Esophagus", - "Respiratory System", - "Larynx", - "Breast", - "Bone", - "Thyroid Gland", - "Bile Duct", - "Muscle", - "Peripheral Blood Mononuclear Cell", - "Trachea", - "Synovial Membrane", - "Tonsil", - "Main Bronchus", - "Testis", - "Artery", - "Esophagus", - "Brain", - "Genitourinary", - "Prostate Gland", - "Salivary Gland", - "Lymph Node", - "Foreskin", - "Sinonasal Tract", - "Oral Mucosa", - "Bone Marrow", - "Lymphoid Tissue", - "Cardia", - "Uterus", - "Kidney", - "Vein", - "Oral Cavity", - "Peripheral Nerves", - "Umbilical Cord", - "Nervous System", - "Blood Vessel", - "Skin", - "Eye", - "Periodontal Ligament", - "Endothelium", - "Hair Follicle", - "Aorta", - "Endocervix", - "Spleen", - "Tendon", - "Cornea", - "Peritoneum", - "Gonad", - "Nasal Cavity", - "Sclera", - "" - ] - } - }, - "Component": { - "type": "string", - "title": "Component", - "description": "Type of metadata associated with this entity.", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Doi":{ - "type": "string", - "title": "DatasetDoi", - "description": "The Digital Object Identifier (DOI) associated with the dataset.", - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Dataset Name", - "Dataset Alias", - "Dataset Url", - "Dataset Assay", - "DatasetView_id", - "Dataset Species", - "Component", - "Dataset Doi" - ] -} \ No newline at end of file From 8e37180b82834a4eccd5c713470e1358f8c28074 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 10 Mar 2025 17:31:45 -0700 Subject: [PATCH 039/106] Create mc2.DatasetView_TEMPLATE.schema.json --- .../mc2.DatasetView_TEMPLATE.schema.json | 966 ++++++++++++++++++ 1 file changed, 966 insertions(+) create mode 100644 json_schemas/mc2.DatasetView_TEMPLATE.schema.json diff --git a/json_schemas/mc2.DatasetView_TEMPLATE.schema.json b/json_schemas/mc2.DatasetView_TEMPLATE.schema.json new file mode 100644 index 00000000..7088d3b2 --- /dev/null +++ b/json_schemas/mc2.DatasetView_TEMPLATE.schema.json @@ -0,0 +1,966 @@ +{ + "$schema": "http://json-schema.org/draft-07/schema#", + "$id": "http://example.com/DatasetView_validation", + "title": "DatasetView_validation", + "type": "object", + "properties": { + "Study Key": { + "type": "string", + "title": "StudyKey", + "description": "The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components." + }, + "PublicationView Key": { + "type": "string", + "title": "PublicationViewKey", + "description": "Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection." + }, + "GrantView Key": { + "type": "string", + "title": "GrantViewKey", + "description": "Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection." + }, + "Dataset File Formats": { + "type": "array", + "items": { + "enum": [ + "PNG", + "MTX", + "VCF", + "TIFF", + "PKL", + "MGF", + "SGI", + "HTML", + "mzXML", + "WIG", + "GCT", + "mzIdentML", + "ROUT", + "BPM", + "MAP", + "MAT", + "CDS", + "H5AD", + "MATLAB script", + "DS_Store", + "SRA", + "BAM", + "RPROJ", + "maf", + "xls", + "GCG", + "IDAT", + "unspecified", + "cel", + "BAI", + "SF", + "BIGWIG", + "JPG", + "GTF", + "PZFX", + "cloupe", + "rcc", + "FREQ", + "COOL", + "Pending Annotation", + "JSON", + "CLS", + "PDF", + "bed12", + "SCN", + "FASTQ", + "GCTx", + "LIF", + "HDF", + "DB", + "MSF", + "pptx", + "Python Script", + "TSV", + "FASTA", + "XML", + "CHP", + "DAE", + "RAW", + "BED", + "docx", + "bedgraph", + "FIG", + "TAR Format", + "HDF5", + "R File Format", + "FCS", + "GFF3", + "TXT", + "STAT", + "H5", + "AVI", + "RTF", + "TDF", + "RDS", + "GZIP Format", + "CSV", + "xlsx", + "ZIP", + "SVS", + "" + ] + } + }, + "Dataset Design": { + "type": "string", + "title": "DatasetDesign", + "description": "The overall design of the dataset.", + "maxLength": 500 + }, + "Dataset Name": { + "not": { + "type": "null" + }, + "type": "string", + "title": "DatasetName", + "description": "Name of the dataset.", + "maxLength": 250 + }, + "Data Use Codes": { + "type": "array", + "title": "DataUseCodes", + "description": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes", + "items": { + "enum": [ + "US", + "NPU", + "PS", + "RS", + "CC", + "POA", + "PUB", + "TS", + "NPUNCU", + "DUM", + "NMDS", + "DS", + "GSO", + "IRB", + "IS", + "RTN", + "NPOA", + "HMB", + "COL", + "NCU", + "GS", + "MOR", + "NRES", + "GRU", + "" + ] + } + }, + "Dataset Alias": { + "type": "string", + "title": "DatasetAlias", + "description": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345 or the dataset Synapse Id", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Url": { + "type": "string", + "title": "DatasetUrl", + "description": "The url of where the dataset is stored.", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Assay": { + "type": "array", + "title": "DatasetAssay", + "description": "The assay(s) the dataset is representative of.", + "items": { + "enum": [ + "3C-qPCR", + "Fluorescence Recovery After Photo-Bleaching", + "TCR Sequencing", + "Organoid", + "Cell Viability Assay", + "DNA Sequencing", + "Time Lapse Microscopy", + "Thin-Layer Chromatography", + "Energy-Dispersive X-Ray Spectroscopy", + "Cross-Linking Mass Spectrometry", + "Global Run-On Sequencing", + "ImmunoFISH", + "RT-qPCR", + "Data Integration", + "FAIRE-Seq", + "Immunotherapy", + "In Vitro Model", + "Not Applicable", + "Immunohistochemistry Staining Method", + "Computational Modeling", + "Metabolite Profiling Assay", + "Stimulated Raman Scattering", + "Cryo-Electron Microscopy", + "Monolayer Stress Microscopy", + "Ultrasound Imaging", + "Stimulated Emission Depletion Microscopy", + "Single Molecule Forster Resonance Energy Transfer", + "Questionnaire", + "Sirius Red Staining", + "Micropipette Aspiration", + "Confocal Microscopy", + "DBiT-Seq", + "qPCR", + "Dideoxy Chain Termination DNA Sequencing", + "unspecified", + "Positron Emission Tomography", + "Single Cell Gel Electrophoresis", + "Statistical Modeling", + "Targeted Therapy Agent", + "Gene Ontology Enrichment Analysis", + "RIP", + "Cytometric Bead Array Assay", + "Stochastic Optical Reconstruction Microscopy", + "In Vivo Bioluminescence", + "Apoptosis Assay", + "Nanowire", + "Dynamic Light Scattering", + "Synaptophysin Staining Method", + "Multiscale Light Sheet Microscopy", + "Chimeric Antigen Receptor T-Cell Therapy", + "MEMA Cell Growth Assay", + "Chemotaxis Assay", + "Patient Derived Xenograft", + "Tiling Array", + "Phagocytosis Assay", + "Southern Blotting", + "Tissue Engineering", + "PET-CT", + "Pending Annotation", + "Brillouin Microscopy", + "Multiplexed Ion Beam Imaging", + "Co-Immunoprecipitation", + "Clonality Analysis", + "Bio-Layer Interferometry", + "Shotgun Mass Spectrometry", + "scNT-Seq", + "Micropipette Adhesion Assay", + "Super-Resolution Microscopy", + "Cell Proliferation Assay", + "Single-Cell BCR Sequencing", + "Collision-Induced Dissociation", + "TRAP Staining", + "Proteomics Assay", + "Direct Long-Read RNA Sequencing", + "Lattice Light Sheet Microscopy", + "X-Ray Crystallography", + "ChIA-PET", + "Electron Microscopy", + "HiChIP", + "Cytochemical Stain", + "Fluorescent In Situ Sequencing", + "Xenograft", + "ChIP-PCR", + "smRNA-seq", + "Desorption Electrospray Ionization", + "RNAi Screen", + "Single Nucleus RNA-Sequencing", + "Global Chromatin Profiling", + "Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture", + "Fluorescence Activated Cell Sorting", + "mRNA Sequencing", + "CASFISH", + "Alcian Blue Staining Method", + "Dark Field Microscopy", + "Western Blotting", + "TUNEL assay", + "Tandem Mass Tagging", + "Second-Harmonic Imaging Microscopy", + "Inductively-Coupled Plasma Mass Spectrometry", + "Dye Endocytosis Assay", + "Brightfield Microscopy", + "Gene Set Enrichment Analysis", + "Enzyme-Linked Immunospot Assay", + "Single-Molecule Tracking", + "Affinity Purification Mass Spectrometry", + "Light Sheet Microscopy", + "Gene Silencing", + "Ribo-Seq", + "5C", + "Endotoxin Assay", + "MNase-Seq", + "3' RNA-seq", + "smFISH", + "Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging", + "Precision Run-On Sequencing", + "Tuba-Seq", + "Electron Diffraction", + "Wound-Healing Assay", + "Multiplexed Immunofluorescence", + "Single Cell RNA-Sequencing", + "Synthesis", + "Mint-ChIP", + "Graphite Furnace Atomic Absorption Spectrometry", + "Optical Coherence Tomography", + "Reverse Phase Protein Array", + "Size Exclusion Chromatography", + "seqFISH", + "ChIP-qPCR assay", + "Flow Cytometry", + "Small-Angle X-ray Scattering", + "Autoradiography", + "Optogenetic Assay", + "FISH", + "Scratch Assay", + "Optical Tweezers", + "10x Multiome", + "Nanopatterning", + "DNA Methylation Array", + "DRIP-seq", + "Single-Molecule Localization Microscopy", + "Interference Reflection Microscopy", + "Traction Force Microscopy", + "Whole Genome Sequencing", + "Total Internal Reflection Fluorescence Microscopy", + "Next Generation Sequencing", + "Photoacoustic Imaging", + "ELISA", + "ATP Bioluminescence Assay", + "Transcription profiling by NanoString", + "Droplet Digital PCR", + "Cross-Linking Immunoprecipitation High-throughput Sequencing", + "Multiparametric Magnetic Resonance Imaging", + "CUT&Tag-Sequencing", + "High Throughput Screening", + "Mammosphere Formation Assay", + "Immunoprecipitation", + "Optical Stretcher", + "Multiphoton Microscopy", + "QFISH", + "MALDI-TOF Mass Spectrometry", + "High-Content Screen", + "Artificial Intelligence", + "Cell Fractionation", + "Partial Wave Spectroscopy", + "Targeted Error Correction Sequencing", + "Microfluidics", + "Clinical Study", + "Whole Exome Sequencing", + "Barcode-Seq", + "Image Cytometry", + "Cell Adhesion Assay", + "Surface Plasmon Resonance", + "Hydrogels", + "Label-free Protein Quantification by LC/MS", + "Cell Culture", + "Gelatin Zymography", + "Structural Variant Analysis", + "RNA Sequencing", + "Viral Transduction", + "3D Cell Culture", + "Bisulfite Sequencing", + "TAB-Seq", + "Reporter Gene Assay", + "Angiogenesis Assay", + "Mass Spectrometry", + "CUT&RUN", + "Amplicon Sequencing", + "Magnetic Resonance Imaging", + "Picrosirius Staining", + "Targeted Genome Sequencing", + "Immunoassay", + "RIP-Seq", + "Spectroscopy", + "Raman Spectroscopy", + "4C", + "Point Accumulation for Imaging in Nanoscale Topography", + "Von Kossa Staining", + "Differential Scanning Fluorimetry", + "Murine Model", + "In Vitro Translation", + "Reverse-Phase High-Performance liquid Chromatography", + "Cell-free Circulating Tumor DNA Assay", + "Nano-hmC-Seal", + "In Vitro Cell Killing Assay", + "PlateSeq", + "Atomic Force Microscopy", + "Rheometry", + "Tissue Microarray", + "Whole Genome Bisulfite Sequencing", + "Microcontact Printing", + "Plasmid Construction", + "Circular Dichroism Spectroscopy", + "Transmission Electron Microscopy", + "Low-Vacuum Scanning Electron Microscopy", + "Paraquat Survival Assay", + "Magnetic Tweezers", + "Drop-Seq", + "MULTI-Seq", + "Computed Tomography", + "Electrophoretic Mobility Shift Assay", + "Co-Immunoprecipitation Mass Spectrometry", + "Magnetically Activated Cell Sorting", + "CellTiter-Glo Luminescent Cell Viability Assay", + "Widefield Fluorescence Microscopy", + "Liquid Chromatography Mass Spectrometry", + "Mathematical Modeling", + "Genotyping", + "Ribosomal P Protein Antibody Measurement", + "Scanning Electron Microscopy", + "SDS-PAGE", + "HPLC-MSMS", + "Fluorescence Correlation Spectroscopy", + "Allograft", + "Optical Mapping", + "Visium Spatial Gene Expression", + "Karyotyping", + "Methylation-Specific PCR", + "Deep Mutational Scanning", + "Fluorescent Cell Barcoding", + "Hydrophilic Interaction Chromatography", + "Single Nucleotide Polymorphism Array", + "In Situ Hybridization", + "3D Bioprinting", + "Efferocytosis Assay", + "Luminescent Cell Viability Assay", + "Differential Interference Contrast Microscopy", + "Hematoxylin and Eosin Staining Method", + "Proximity Ligation Assay", + "Fluorescent Antibody Procedure", + "Fourier-Transform Infrared Spectroscopy", + "TIRF Microscopy", + "Forster Resonance Energy Transfer", + "UPLC-MSMS", + "Immobilized Metal Affinity Chromatography", + "Single-Cell Barcode Chip", + "ATAC-Seq", + "Cell-spreading Assay", + "CRISPR", + "siRNA", + "Metastatic Colonization Assay", + "cDNA Array", + "RAS Protein Family Activation Assay", + "Cyclic Immunofluorescence", + "Cerenkov Luminescence Imaging", + "Immunocytochemistry", + "Atomic Absorption Spectroscopy", + "Quantitative Point Accumulation for Imaging in Nanoscale Topography", + "Co-culture Assay", + "Bioluminescence Imaging", + "CLIP-qPCR", + "Phylogenetic Analysis", + "Virus Plaque Assay", + "Single Cell DNA Sequencing", + "3C", + "Migration Assay", + "In-Cell Western Assay", + "Fluorescence Lifetime Imaging Microscopy", + "Macrophage Polarization Assay", + "Knife-Edge Scanning Microscopy", + "Permeability Assay", + "Multi-Angle Light Scattering", + "L1000 mRNA Profiling Assay", + "Molecular Simulations", + "Reduced Representation Bisulfite Sequencing", + "Field-Emission Scanning Electron Microscopy", + "Bioelectrochemical Analysis", + "Optical Emission Spectroscopy", + "Confocal Reflectance Quantitative Phase Microscopy", + "imaging", + "MeRIP-Seq", + "Single Cell ATAC-Seq", + "10-cell RNA Sequencing", + "Trichrome Staining Method", + "scCGI-seq", + "Scanning Angle Interference Microscopy", + "Focused Ion Beam Scanning Electron Microscopy", + "Electron Paramagnetic Resonance Spectroscopy", + "Dynamic Contrast-Enhanced Magnetic Resonance Imaging", + "Transwell Assay", + "16S Ribosomal Gene Sequencing Assay", + "Modeling", + "In Vitro Selection", + "ChIP-Seq", + "Target Engagement Assay", + "Fluorescence Microscopy", + "Nested PCR", + "DNase-Seq", + "Epidemiological Method", + "CITE-seq", + "HL-Chip", + "Nuclear Magnetic Resonance", + "Single-Cell TCR Sequencing", + "Microscopy", + "Pull-Down Assay", + "Hi-C", + "Dynamic Force Spectroscopy", + "Multiplexed Error-Robust Fluorescence In Situ Hybridization", + "Invasion Assay", + "Cytokine Expression Profile", + "DNA Gene-Expression Microarray", + "Diffusion Weighted Imaging", + "Fluorescence Imaging", + "Gas Chromatography Mass Spectrometry", + "Nanopore Sequencing", + "Multi-Isotope Mass Spectrometry", + "MicroRNA Sequencing", + "X-Ray Micro-Computed Tomography", + "NanoString Digital Spatial Profiling", + "Suspended Microchannel Resonator", + "Antitumor Drug Screening Assay", + "RT-PCR", + "Quantitative Multiplex Immunofluorescence", + "Cryo-Electron Tomography", + "Cytotoxicity Assay", + "X-Ray Diffraction", + "Immunofluorescent Staining Method", + "Atomic Absorption Spectrophotometry", + "Imaging Mass Cytometry", + "Multiplexed Immunohistochemistry", + "Single Cell Cytokine Detection Chip Assay", + "MeDIP", + "snRNA-seq", + "Survival Analysis", + "Magnetic Twisting Cytometry", + "Tandem Mass Spectrometry", + "Isothermal Titration Calorimetry", + "Mass Cytometry", + "Soft Agar Assay", + "MicroRNA Expression Array", + "Nm-seq", + "Liquid Chromatography/Tandem Mass Spectrometry", + "Deep Learning", + "Chemiluminescent Assay", + "Luciferase Reporter Assay", + "Dual-Luciferase Reporter Assay", + "Thermal Shift Assay", + "Time-Correlated Single Photon Counting", + "Photolithography", + "eCLIP-Seq", + "Comparative Genomic Hybridization", + "Surveyor Nuclease Assay", + "UV Photocrosslinking", + "Micro-computed Tomography", + "Colorimetric Cell Viability Assay", + "Intravital Microscopy", + "Enzyme Activity Assay", + "Methyl Binding Domain Sequencing", + "Cell Cycle Assay", + "scSLAM-seq", + "Vibrational Spectroscopy", + "shRNA", + "Bicinchoninic Acid Assay", + "Computational Tool", + "Fourier Transform Ion Cyclotron Resonance Mass Spectrometry", + "Electrospray Ionization Time-of-Flight Mass Spectrometry", + "PCR", + "Targeted Transcriptome Sequencing", + "Binding Assay", + "Synthetic Genetic Array" + ] + } + }, + "Dataset Description": { + "type": "string", + "title": "DatasetDescription", + "description": "Text description of the dataset.", + "maxLength": 500 + }, + "DatasetView_id": { + "type": "string", + "title": "DatasetViewid", + "description": "A unique primary key that enables record updates using schematic", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Species": { + "type": "array", + "title": "DatasetSpecies", + "description": "The species the data was collected on.", + "items": { + "enum": [ + "Boar", + "Mouse", + "Sheep", + "Asian Elephant", + "Rabbit", + "Multispecies", + "Cow", + "Human", + "Cat", + "Human Cell Line", + "Guinea Pig", + "unspecified", + "Opossum", + "Armadillo", + "Fruit Fly", + "Dog", + "Horse", + "Trichoplax adhaerens", + "Chicken", + "Escherichia coli", + "Human Patient", + "Rat", + "unknown", + "Yeast", + "Rhesus monkey", + "Worm", + "Zebrafish", + "African Bush Elephant" + ] + } + }, + "Dataset Tumor Type": { + "type": "array", + "title": "DatasetTumorType", + "description": "The tumor type(s), if applicable, of the data collected on", + "items": { + "enum": [ + "Angiosarcoma", + "Glioblastoma", + "Ovarian Carcinoma", + "Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features", + "Precursor B-cell lymphoblastic leukemia", + "Primary Central Nervous System Lymphoma", + "Cutaneous T Cell Lymphoma", + "Giant Cell Tumor", + "Colorectal Adenoma", + "Neuroepithelial Neoplasm", + "Prostate Adenocarcinoma", + "Fibrolamellar Carcinoma", + "Rosette-Forming Glioneuronal Tumor", + "Non-Functioning Pituitary Gland Adenoma", + "Adenocarcinoma", + "Biliary Tract Carcinoma", + "Acinar Cell Carcinoma", + "Luminal A Breast Carcinoma", + "Malignant Pancreatic Neoplasm", + "Retinoblastoma", + "Gastric Adenocarcinoma", + "Lymphoma", + "B-Cell Non-Hodgkin Lymphoma", + "Pancreatic Neoplasm", + "Plexiform Neurofibroma", + "Mycosis Fungoides", + "Pituitary Gland Adenoma", + "Not Applicable", + "Cervical Neoplasm", + "Combined Hepatocellular Carcinoma and Cholangiocarcinoma", + "Bone Neoplasm", + "Thyroid Gland Carcinoma", + "Ductal Breast Carcinoma In Situ", + "Malignant Skin Neoplasm", + "Bladder Neoplasm", + "Carcinoma", + "Hodgkin Lymphoma", + "Leukemia", + "Colorectal Neoplasm", + "Ewing Sarcoma", + "Urothelial Carcinoma", + "Clear Cell Renal Cell Carcinoma", + "Malignant Peripheral Nerve Sheath Tumor", + "Basal-Like Breast Carcinoma", + "Pilocytic Astrocytoma", + "Craniopharyngioma", + "Basal Cell Neoplasm", + "Triple-Negative Breast Carcinoma", + "Ovarian Neoplasm", + "Rectal Adenocarcinoma", + "Uveal Neoplasm", + "Acute Monocytic Leukemia", + "Skin Carcinoma", + "Gastroesophageal Junction Adenocarcinoma", + "Multiple Myeloma", + "Oral Cavity Neoplasm", + "Gastrointestinal Stromal Neoplasm", + "Mantle Cell Lymphoma", + "Marginal Zone Lymphoma", + "Penile Carcinoma", + "T-Cell Lymphoma", + "Synovial Sarcoma", + "Malignant Neoplasm", + "Central Nervous System Cavernous Hemangioma", + "Fibrosarcoma", + "Prostate Carcinoma", + "Cerebellar Neoplasm", + "Ovarian Adenosarcoma", + "B Acute Lymphoblastic Leukemia", + "Head and Neck Neoplasm", + "Chronic Myeloid Leukemia", + "Diffuse Large B-Cell Lymphoma", + "Leiomyoma", + "Acute Myeloid Leukemia", + "Esophageal Adenocarcinoma", + "Meningioma", + "Malignant Genitourinary System Neoplasm", + "Myeloid Leukemia", + "Histiocytic Sarcoma", + "Oral Cavity Squamous Cell Carcinoma", + "Bladder Carcinoma", + "Not-Applicable", + "Gallbladder Carcinoma", + "Non-Hodgkin Lymphoma", + "Osteosarcoma", + "Myeloproliferative Neoplasm", + "Pancreatic Ductal Adenocarcinoma", + "Breast Carcinoma", + "Esophageal Carcinoma", + "Atypical Teratoid/Rhabdoid Tumor", + "Pan-cancer", + "Barrett Esophagus", + "Breast Neoplasm", + "Nasopharyngeal Carcinoma", + "Pending Annotation", + "Sinonasal Squamous Cell Carcinoma", + "Colorectal Adenocarcinoma", + "Choriocarcinoma", + "Carcinoma In Situ", + "Pancreatic Neuroendocrine Carcinoma", + "Endometrial Neoplasm", + "Ovarian Serous Adenocarcinoma", + "Pancreatic Adenocarcinoma", + "Lung Squamous Cell Carcinoma", + "Lung Non-Small Cell Carcinoma", + "Lymphoid Leukemia", + "Plexiform Schwannoma", + "Liver and Intrahepatic Bile Duct Neoplasm", + "Malignant Peritoneal Neoplasm", + "Astrocytoma", + "Lung Carcinoma", + "Schwannoma", + "Fibroepithelial Polyp", + "Intestinal Neoplasm", + "Testicular Embryonal Carcinoma", + "Kaposi Sarcoma", + "Follicular Lymphoma", + "Rhabdomyosarcoma", + "Pheochromocytoma", + "Hepatocellular Carcinoma", + "Esophageal Squamous Cell Carcinoma", + "Gastric Neoplasm", + "Cervical Carcinoma", + "Serous Tubal Intraepithelial Carcinoma", + "T Acute Lymphoblastic Leukemia", + "Cholangiocarcinoma", + "Colon Adenocarcinoma", + "Uterine Adenosarcoma", + "Soft Tissue Sarcoma", + "Central Nervous System Neoplasm", + "Gastric Carcinoma", + "Lung Adenocarcinoma", + "Colon Carcinoma", + "Myoepithelioma", + "Medulloblastoma", + "Cutaneous Melanoma", + "Invasive Ductal Breast Carcinoma", + "Prostate Neoplasm", + "Acute Lymphoblastic Leukemia", + "Neuroendocrine Neoplasm", + "Lung Small Cell Carcinoma", + "Uveal Melanoma", + "Brain Neoplasm", + "Skin Neoplasm", + "Malignant Digestive System Neoplasm", + "Malignant Glioma", + "Dysembryoplastic Neuroepithelial Neoplasm", + "Castration-Resistant Prostate Carcinoma", + "Colorectal Carcinoma", + "Liver and Intrahepatic Bile Duct Carcinoma", + "Glioma", + "Neurofibroma", + "Primary Myelofibrosis", + "Plasmablastic Lymphoma", + "Head and Neck Squamous Cell Carcinoma", + "Neuroblastoma", + "Lung Neoplasm", + "Melanoma", + "Thyroid Gland Anaplastic Carcinoma", + "Cervical Small Cell Carcinoma", + "Ependymoma", + "Sarcoma", + "Gastroesophageal Adenocarcinoma", + "Acute Promyelocytic Leukemia", + "Pancreatic Carcinoma", + "Low Grade Glioma", + "Mesothelioma", + "High Grade Ovarian Serous Adenocarcinoma", + "Malignant Ovarian Neoplasm", + "Head and Neck Carcinoma", + "Cellular Schwannoma", + "Oropharyngeal Neoplasm", + "Teratoma", + "Breast Adenocarcinoma", + "Chondroblastoma", + "Intrahepatic Cholangiocarcinoma", + "Chronic Lymphocytic Leukemia", + "Vascular Neoplasm", + "Endometrial Carcinoma", + "Myeloid Neoplasm", + "Extraventricular Neurocytoma", + "Salivary Gland Adenoid Cystic Carcinoma", + "Plasmacytoma", + "Squamous Cell Carcinoma", + "Renal Cell Carcinoma", + "Malignant Brain Neoplasm", + "" + ] + } + }, + "Dataset Tissue": { + "type": "array", + "title": "DatasetTissue", + "description": "Tissue type(s) associated with the dataset", + "items": { + "enum": [ + "Cervix Uteri", + "Vascular Endothelium", + "Thymus", + "Tongue", + "Hippocampus", + "Stomach", + "Frontal Lobe", + "Colon", + "Pleura", + "Pelvic Lymph Nodes", + "Heart", + "Pharynx", + "Intestine", + "Connective and Soft Tissue", + "Lymph Nodes of Axilla or Arm", + "Gastroesophageal Junction", + "Fallopian Tube", + "Vagina", + "Not Applicable", + "Liver", + "Duodenum", + "Epithelium", + "Ligament", + "Joint", + "Pituitary Gland", + "Lymph Nodes of Inguinal Region or Leg", + "Heart Muscle", + "Pancreas", + "Omentum", + "Ovary", + "Lymph", + "Lung", + "Reproductive System", + "Placenta", + "Adipose Tissue", + "Mucosa", + "Cancer-Associated Fibroblast", + "Embryo", + "Intrathoracic Lymph Nodes", + "Alveolus", + "unspecified", + "Meninges", + "Hematopoietic System", + "Small Intestine", + "Olfactory Mucosa", + "Spinal Cord", + "Blood", + "Mesenchyme", + "Ascending Colon", + "Ear", + "Bladder", + "Cartilage", + "Rectum", + "Vertebra", + "Head and Neck", + "Endometrium", + "Gastrointestinal Tract", + "Choroid", + "Caecum", + "Pending Annotation", + "Embryonic Heart", + "Mammary Gland", + "Adrenal Gland", + "Lymphatic System", + "Intra-Abdominal Lymph Nodes", + "Abdominal Esophagus", + "Respiratory System", + "Larynx", + "Breast", + "Bone", + "Thyroid Gland", + "Bile Duct", + "Muscle", + "Peripheral Blood Mononuclear Cell", + "Trachea", + "Synovial Membrane", + "Tonsil", + "Main Bronchus", + "Testis", + "Artery", + "Esophagus", + "Brain", + "Genitourinary", + "Prostate Gland", + "Salivary Gland", + "Lymph Node", + "Foreskin", + "Sinonasal Tract", + "Oral Mucosa", + "Bone Marrow", + "Lymphoid Tissue", + "Cardia", + "Uterus", + "Kidney", + "Vein", + "Oral Cavity", + "Peripheral Nerves", + "Umbilical Cord", + "Nervous System", + "Blood Vessel", + "Skin", + "Eye", + "Periodontal Ligament", + "Endothelium", + "Hair Follicle", + "Aorta", + "Endocervix", + "Spleen", + "Tendon", + "Cornea", + "Peritoneum", + "Gonad", + "Nasal Cavity", + "Sclera", + "" + ] + } + }, + "Component": { + "type": "string", + "title": "Component", + "description": "Type of metadata associated with this entity.", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Doi":{ + "type": "string", + "title": "DatasetDoi", + "description": "The Digital Object Identifier (DOI) associated with the dataset.", + "not": { + "type": "null" + }, + "minLength": 1 + } + }, + "required": [ + "Dataset Name", + "Dataset Alias", + "Dataset Url", + "Dataset Assay", + "DatasetView_id", + "Dataset Species", + "Component", + "Dataset Doi" + ] +} \ No newline at end of file From 3a5911ad58f9837fc04322eb71963a3b50075fa6 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 12 Mar 2025 11:58:52 -0700 Subject: [PATCH 040/106] Update grant_number.csv --- modules/grant/grant_number.csv | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/modules/grant/grant_number.csv b/modules/grant/grant_number.csv index 259f3980..57034ccc 100644 --- a/modules/grant/grant_number.csv +++ b/modules/grant/grant_number.csv @@ -142,4 +142,15 @@ CA283114,,,,FALSE,,Grant Number,,,,,,,, CA274507,,,,FALSE,,Grant Number,,,,,,,, CA274506,,,,FALSE,,Grant Number,,,,,,,, CA274511,,,,FALSE,,Grant Number,,,,,,,, -CA282451,,,,FALSE,,Grant Number,,,,,,,, \ No newline at end of file +CA282451,,,,FALSE,,Grant Number,,,,,,,, +CA284085,,,,FALSE,,Grant Number,,,,,,,, +CA283749,,,,FALSE,,Grant Number,,,,,,,, +CA289564,,,,FALSE,,Grant Number,,,,,,,, +CA293470,,,,FALSE,,Grant Number,,,,,,,, +CA279722,,,,FALSE,,Grant Number,,,,,,,, +CA290115,,,,FALSE,,Grant Number,,,,,,,, +CA279948,,,,FALSE,,Grant Number,,,,,,,, +CA281216,,,,FALSE,,Grant Number,,,,,,,, +CA292382,,,,FALSE,,Grant Number,,,,,,,, +CA290442,,,,FALSE,,Grant Number,,,,,,,, +CA293853,,,,FALSE,,Grant Number,,,,,,,, From 82a78065c7cfddf670bd6d88ad2bc22873bc7eb6 Mon Sep 17 00:00:00 2001 From: "mc2center-bot[bot]" Date: Wed, 12 Mar 2025 20:03:58 +0000 Subject: [PATCH 041/106] build jsonld --- all_valid_values.csv | 11 + mc2.model.csv | 16 +- mc2.model.jsonld | 616 ++++++++++++++++++++ modules/dataset/annotationProperty.csv | 2 +- modules/education/annotationProperty.csv | 2 +- modules/person/annotationProperty.csv | 2 +- modules/project/annotationProperty.csv | 2 +- modules/publication/annotationProperty.csv | 2 +- modules/sharingPlans/annotationProperty.csv | 2 +- modules/tool/annotationProperty.csv | 4 +- 10 files changed, 643 insertions(+), 16 deletions(-) diff --git a/all_valid_values.csv b/all_valid_values.csv index 47dfe52a..32b617d0 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -8156,6 +8156,17 @@ grant_number,CA274507, grant_number,CA274506, grant_number,CA274511, grant_number,CA282451, +grant_number,CA284085, +grant_number,CA283749, +grant_number,CA289564, +grant_number,CA293470, +grant_number,CA279722, +grant_number,CA290115, +grant_number,CA279948, +grant_number,CA281216, +grant_number,CA292382, +grant_number,CA290442, +grant_number,CA293853, assay,10-cell RNA Sequencing,10-cell rna sequencing assay,16S Ribosomal Gene Sequencing Assay,"16s ribosomal gene sequencing assay, 16S rRNA sequencing, 16S Ribosomal RNA Sequencing, 16S rRNA gene amplification, 16S ribosomal RNA sequencing" assay,3' RNA-seq, diff --git a/mc2.model.csv b/mc2.model.csv index c26899da..f5a13201 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -62,7 +62,7 @@ Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, ToolView Key, Resource Title, Resource Link, Resource Doi, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",FALSE,,,Grant View,, @@ -79,7 +79,7 @@ Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like::regex search [a-z]{2} Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,MC2/grant,list like Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str @@ -317,7 +317,7 @@ Chair Roles,"Committee or working group chair role(s) the individual fulfilled ( Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,TRUE,,,,, Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,Grant View,, -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like @@ -329,7 +329,7 @@ Project Type,Type of project,"Core, Project",,TRUE,,,,, Project Description,Description of the project,,,TRUE,,,,, Project Investigator,Investigator(s) associated witht the project.,,,TRUE,,,,,list like Project View,The denormalized manifest for project submission.,,"Component, ProjectView_id, GrantView Key, Project Name, Project Type, Project Description, Project Investigator",FALSE,,,Grant View,, -Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Project Consortium Name,Consortia associated with the project.,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, ProjectView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,FALSE,,,,,unique @@ -346,7 +346,7 @@ Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, GrantView Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,Study,, -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, @@ -448,7 +448,7 @@ DSP Number of Participants,The number of individuals or model organisms from whi DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,FALSE,,,,,num DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,TRUE,,,,,date DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date -DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ @@ -490,7 +490,7 @@ Tool Entity Name,Name of the entities that may be credited,,,FALSE,,,,,list like Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,TRUE,,,,biotoolsschema,list like Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,TRUE,,,,biotoolsschema,list like Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,FALSE,,,,biotoolsschema, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,TRUE,,,,biotoolsschema,url Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like @@ -506,7 +506,7 @@ Tool Output Data,"Type of primary output data. Multiple values permitted, comma Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,FALSE,,,,CWL,list like Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,TRUE,,,,CWL, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,TRUE,,,,schema.org,date Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,FALSE,,,,biotoolsschema,list like diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 5c1b8dd5..60688258 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -221363,6 +221363,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Dataset Grant Number", @@ -226411,6 +226444,391 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:CA284085", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA284085", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA284085", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA283749", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA283749", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA283749", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA289564", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA289564", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA289564", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA293470", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA293470", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA293470", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA279722", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA279722", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA279722", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA290115", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA290115", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA290115", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA279948", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA279948", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA279948", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA281216", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA281216", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA281216", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA292382", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA292382", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA292382", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA290442", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA290442", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA290442", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA293853", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA293853", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA293853", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:DatasetPubmedId", "@type": "rdfs:Class", @@ -234160,6 +234578,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Resource Grant Number", @@ -303530,6 +303981,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Person Grant Number", @@ -304162,6 +304646,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Project Grant Number", @@ -307114,6 +307631,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Publication Grant Number", @@ -315800,6 +316350,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "DSP Dataset Grant Number", @@ -318114,6 +318697,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Tool Grant Number", diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index 66fa6dbd..e06dcc05 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -11,6 +11,6 @@ Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/education/annotationProperty.csv b/modules/education/annotationProperty.csv index 09a1e412..0e410fee 100644 --- a/modules/education/annotationProperty.csv +++ b/modules/education/annotationProperty.csv @@ -13,7 +13,7 @@ Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like::regex search [a-z]{2} Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,MC2/grant,list like Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str diff --git a/modules/person/annotationProperty.csv b/modules/person/annotationProperty.csv index ffdcd7c4..3e33f03e 100644 --- a/modules/person/annotationProperty.csv +++ b/modules/person/annotationProperty.csv @@ -11,7 +11,7 @@ Chair Roles,"Committee or working group chair role(s) the individual fulfilled ( Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,TRUE,,,,, Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,Grant View,, -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like diff --git a/modules/project/annotationProperty.csv b/modules/project/annotationProperty.csv index 924ef333..9efc469c 100644 --- a/modules/project/annotationProperty.csv +++ b/modules/project/annotationProperty.csv @@ -4,6 +4,6 @@ Project Type,Type of project,"Core, Project",,TRUE,,,,, Project Description,Description of the project,,,TRUE,,,,, Project Investigator,Investigator(s) associated witht the project.,,,TRUE,,,,,list like Project View,The denormalized manifest for project submission.,,"Component, ProjectView_id, GrantView Key, Project Name, Project Type, Project Description, Project Investigator",FALSE,,,Grant View,, -Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Project Consortium Name,Consortia associated with the project.,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, ProjectView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index 85b12f5d..019a0fd0 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -13,6 +13,6 @@ Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, GrantView Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,Study,, -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index 55e6e959..a5dc35bd 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -15,7 +15,7 @@ DSP Number of Participants,The number of individuals or model organisms from whi DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,FALSE,,,,,num DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,TRUE,,,,,date DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date -DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index 8431178b..3adea7df 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -16,7 +16,7 @@ Tool Entity Name,Name of the entities that may be credited,,,FALSE,,,,,list like Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,TRUE,,,,biotoolsschema,list like Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,TRUE,,,,biotoolsschema,list like Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,FALSE,,,,biotoolsschema, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,TRUE,,,,biotoolsschema,url Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like @@ -32,7 +32,7 @@ Tool Output Data,"Type of primary output data. Multiple values permitted, comma Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,FALSE,,,,CWL,list like Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,TRUE,,,,CWL, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,TRUE,,,,schema.org,date Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,FALSE,,,,biotoolsschema,list like From 82aac9fab3beef9ea86a63660a85d3a738323b8e Mon Sep 17 00:00:00 2001 From: davidrollins12 Date: Wed, 12 Mar 2025 17:05:21 -0700 Subject: [PATCH 042/106] resolve Orion and Ashley's comments --- docs/index.md | 2 +- docs/model/DataDSP.md | 2 +- docs/model/dataset.md | 5 ++++- docs/model/grant.md | 6 +++++- docs/model/person.md | 19 ++++++++++--------- modules/dataset/exampleColumn.csv | 5 ++--- modules/file/annotationProperty.csv | 5 +---- modules/file/exampleColumn.csv | 16 ++++++++-------- modules/grant/exampleColumn.csv | 4 ++-- modules/person/exampleColumn.csv | 4 ++-- modules/publication/exampleColumn.csv | 2 +- modules/sharingPlans/annotationProperty.csv | 5 ----- modules/sharingPlans/exampleColumn.csv | 7 ++----- modules/study/annotationProperty.csv | 3 --- modules/study/exampleColumn.csv | 2 +- modules/tool/annotationProperty.csv | 2 -- 16 files changed, 40 insertions(+), 49 deletions(-) diff --git a/docs/index.md b/docs/index.md index 2531d5b5..38a9d049 100644 --- a/docs/index.md +++ b/docs/index.md @@ -9,7 +9,7 @@

### **Welcome!** -The MC2 Center Data Models Explorer enables structured, standardized documentation of data and resources for research projects like the [Cancer Complexity Knowledge Portal](https://www.cancercomplexity.synapse.org/). +The MC2 Center Data Models Explorer enables structured, standardized documentation of data and resources for the [Cancer Complexity Knowledge Portal](https://www.cancercomplexity.synapse.org/). This platform is designed to support **researchers**, **developers**, and **data contributors** by enhancing collaboration, reproducibility, and data discovery through clear metadata standards. Documenting key attributes of datasets, studies, publications, and more ensures that research outputs remain accessible and reusable across teams and projects. diff --git a/docs/model/DataDSP.md b/docs/model/DataDSP.md index bc0cc184..5d907541 100644 --- a/docs/model/DataDSP.md +++ b/docs/model/DataDSP.md @@ -1,6 +1,6 @@ A **Dataset Sharing Plan (DataDSP)** is a structured framework used to document the sharing, storage, and usage details of datasets within MC2 Center-supported Synapse projects. These plans help ensure datasets are traceable, well-organized, and compliant with regulations regarding data sharing, accessibility, and ethical use. By defining attributes such as dataset names, assays, species, and sharing permissions, the model facilitates efficient data management and collaboration across research projects. -This page outlines the key attributes required to create a DataDSP, guiding users on how to structure and share datasets while adhering to best practices. It also demonstrates how attributes like planned upload dates, file formats, and grant numbers are used to ensure compliance with both internal and external data-sharing policies. +This page outlines the key attributes required to create a data sharing plan, guiding users on how to structure and share datasets while adhering to best practices. It also demonstrates how attributes like planned upload dates, file formats, and grant numbers are used to ensure compliance with both internal and external data-sharing policies. ## **Why You Should Contribute DataDSP Entries** Contributing DataDSP entries benefits your research and projects by improving data accessibility, organization, and compliance. With complete entries, you enhance collaboration opportunities, simplify data sharing, and increase the impact and visibility of your datasets in research communities. By ensuring your data is properly documented and discoverable, you also reduce administrative burdens during audits, grant reporting, and data requests. diff --git a/docs/model/dataset.md b/docs/model/dataset.md index 65705fd9..5f3a5970 100644 --- a/docs/model/dataset.md +++ b/docs/model/dataset.md @@ -3,7 +3,10 @@ A **Dataset** refers to a structured collection of data that is organized for an This model outlines key attributes that describe and manage datasets, including metadata about the data type, format, number of samples, and related grant information. By maintaining these attributes, datasets can be efficiently tracked and referenced within data repositories. ## **Why You Should Contribute Dataset Entries** -Contributing dataset entries helps ensure your data is easily discoverable, accurately documented, and compliant with research standards. By providing well-structured dataset metadata, you enhance opportunities for collaboration, boost data citation potential, and reduce administrative overhead for reporting and compliance. Well-documented datasets also help other researchers and stakeholders use your data effectively, increasing its long-term impact. +Contributing dataset entries ensures that your data is easily discoverable, accurately documented, and compliant with research standards. Well-structured metadata enhances collaboration opportunities, increases data citation potential, and reduces administrative overhead for reporting and compliance. Additionally, dataset entries are required for sharing through the Cancer Complexity Knowledge Portal (CCKP). + +You can submit dataset entries for data stored both within and outside of Synapse, including repositories like the Gene Expression Omnibus (GEO), Database of Genotypes and Phenotypes (dbGaP), and Zenodo, allowing them to be listed on the CCKP. Well-documented datasets help other researchers and stakeholders effectively use your data, maximizing its long-term impact. + ### **Who Should Be Contributing Dataset Entries?** 1. **Principal Investigators (PIs)** – Increase the visibility and impact of your research by contributing properly cataloged datasets, making it easier for others to cite and use your work. diff --git a/docs/model/grant.md b/docs/model/grant.md index bc18c564..cbca37db 100644 --- a/docs/model/grant.md +++ b/docs/model/grant.md @@ -3,7 +3,10 @@ A **Grant** entry captures essential details about funded research projects. Gra This section outlines how to create a valid grant entry by defining key metadata, including grant type, institution, investigator, and project duration. Proper grant documentation ensures projects can be easily identified, referenced, and managed across research initiatives. ### **Why You Should Contribute Grant Entries** -Contributing grant entries ensures that funding sources, research objectives, and project details are transparent and traceable. This helps stakeholders monitor the progress of research initiatives, improves collaboration by connecting teams with similar funding, and supports compliance with reporting and accountability requirements. Accurate grant documentation also strengthens your ability to secure future funding by showcasing project outcomes and impacts. +Grant information is maintained by the MC2 Center to ensure accurate tracking of funding sources, research objectives, and project details. This helps stakeholders monitor research progress, facilitates collaboration across funded initiatives, and supports compliance with reporting and accountability requirements. + +At this time, grant entries are curated exclusively by MC2 Center staff and are not open for external contributions. If broader contribution access is introduced in the future, updated guidelines will be provided. + #### **Who Should Be Contributing Grant Entries?** 1. **Principal Investigators (PIs)** – Document your funded projects to highlight ongoing research, objectives, and collaborations for visibility and accountability. @@ -18,6 +21,7 @@ Use the [grant entry template](https://github.com/mc2-center/data-models/raw/mai ## Example Data Entry The table below includes sample values to demonstrate proper attribute usage. +It is important to note that where these examples can generally guide you on the structure of the Grant entry, these fields will generally be curated by a member of the MC2 personnel near the beginning of the grant funding period and will be made available via Synapse. | **Attribute** | **Example Value** | |----------------------------|-------------------------------------------------------------------------------------------------------------| diff --git a/docs/model/person.md b/docs/model/person.md index b757c96f..4d645f9d 100644 --- a/docs/model/person.md +++ b/docs/model/person.md @@ -5,15 +5,16 @@ This section outlines how to create a valid person entry, ensuring that all nece ### **Why You Should Contribute Person Entries** Contributing person entries enhances collaboration by providing clear visibility into expertise, roles, and project involvement within research teams. It helps connect researchers and contributors across projects, facilitates networking opportunities, and allows stakeholders to easily identify key personnel for collaboration or consultation. Maintaining up-to-date profiles also supports transparency and improves recognition of contributions to research initiatives. -#### **Who Should Be Contributing Person Entries?** -1. **Researchers and Scientists** – Document your roles, publications, and collaborations to increase visibility within your field and enable others to reach out for partnerships. -2. **Project Leads and Investigators** – Ensure key contributors to your projects are credited and easily searchable for collaboration and reporting purposes. -3. **Research Administrators** – Keep records of team members, roles, and working group participation to manage projects efficiently and facilitate compliance reporting. -4. **Consortium Members** – Share your expertise and involvement across multiple projects or institutions to encourage cross-disciplinary collaboration and integration of research efforts. -5. **Data Managers** – Link researchers to datasets, tools, and resources they have contributed to ensure traceability and acknowledgment of contributions. - -## Download Template -Download the [person entry template](https://github.com/mc2-center/data-models/raw/main/templates/PersonView.csv) for streamlined data entry, ensuring that all required fields are filled out. +#### Who Should Be Contributing Person Entries? +1. Researchers and Scientists – Document your roles, publications, and collaborations to increase visibility within your field and enable others to reach out for partnerships. +2. Project Leads and Investigators – Ensure key contributors to your projects are credited and easily searchable for collaboration and reporting purposes. +3. Research Administrators – Keep records of team members, roles, and working group participation to manage projects efficiently and facilitate compliance reporting. +4. Consortium Members – Share your expertise and involvement across multiple projects or institutions to encourage cross-disciplinary collaboration and integration of research efforts. +5. Data Managers – Link researchers to datasets, tools, and resources they have contributed to ensure traceability and acknowledgment of contributions. + +## How to Contribute Person Entries +To submit a Person entry, complete the [Person Entry Submission Form](https://docs.google.com/forms/d/e/1FAIpQLScuFHETXIdfe0HPqkFQ7jx3wIIwBRqaqIXH_ZM5f2DWvNQa2g/viewform). The MC2 Center will review submissions, collect necessary consent, and curate PersonView entries accordingly. + ## Example Data Entry The table below includes sample values to demonstrate proper attribute usage. diff --git a/modules/dataset/exampleColumn.csv b/modules/dataset/exampleColumn.csv index 66ff0222..3e5bdd60 100644 --- a/modules/dataset/exampleColumn.csv +++ b/modules/dataset/exampleColumn.csv @@ -5,11 +5,10 @@ Dataset Description,"This dataset contains RNA sequencing data from 200 lung can Dataset Design,"'Cross-sectional' to compare gene expression in healthy vs. tumor tissues, or 'Time-series' to observe changes during treatment." Dataset Url,"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789" Dataset Assay,"RNA Sequencing" -Dataset Species,"Homo sapiens" +Dataset Species,"Mouse" Dataset Tumor Type,"Glioblastoma" Dataset Tissue,"Lung" Dataset File Formats,"""AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" Dataset View,"Table, Spreadsheet" Dataset Grant Number,"CA209971" -Dataset Pubmed Id,"31245678" -DatasetView_id,"DatasetView_67890" \ No newline at end of file +Dataset Pubmed Id,"31245678" \ No newline at end of file diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index 95fac3ce..1b687052 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -4,20 +4,17 @@ File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, -File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, -File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique -File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like +File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like \ No newline at end of file diff --git a/modules/file/exampleColumn.csv b/modules/file/exampleColumn.csv index 580fc710..880a0473 100644 --- a/modules/file/exampleColumn.csv +++ b/modules/file/exampleColumn.csv @@ -1,20 +1,20 @@ Attribute,Example File Description,"""CSV file containing gene expression data for breast cancer""" -File Design,CSV +File Design,"""Gene expression values derived from RNA sequencing of tumor and normal tissue samples, processed using STAR aligner and featureCounts. Samples collected from 100 patients at diagnosis.""" File Url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) File Assay,RNA Sequencing -File Level,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" +File Level,"Level 3" File Species,Human File Tumor Type,Breast Carcinoma File Tissue,Breast File View,List View -FileView_id,"""FileView_123456""" -File Longitudinal Group, -File Longitudinal Event Type,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." +FileView_id,"""SynapseID_123456""" +File Longitudinal Group,"Patient Cohort A - Baseline" +File Longitudinal Event Type,"Baseline" File Longitudinal Sequence Identifier,10-9876543210-12 File Longitudinal Time Elapsed Unit,Seconds -File Longitudinal Sequential Time Elapsed,"""2 hours 45 minutes""" -File Longitudinal Total Time Elapsed,"""120 minutes""" +File Longitudinal Sequential Time Elapsed,"""9900s""" +File Longitudinal Total Time Elapsed,"""990000s""" File Format,CSV -File Alias,"""Breast_Cancer_Gene_Expression.csv""" +File Alias,"""SynapseID_123456""" File Anatomic Site,"Brain stem, Cervix uteri" \ No newline at end of file diff --git a/modules/grant/exampleColumn.csv b/modules/grant/exampleColumn.csv index 0f727eac..2eb5b553 100644 --- a/modules/grant/exampleColumn.csv +++ b/modules/grant/exampleColumn.csv @@ -1,5 +1,5 @@ Attribute,Example -Grant Name,CA202177: Mechanistic Modeling of Cancer Cell Migration +Grant Name,Mechanistic Modeling of Cancer Cell Migration Grant Number,CA202177 Grant Abstract,This study investigates the mechanisms of cancer cell migration through advanced modeling techniques. Grant Type,R01 @@ -9,7 +9,7 @@ Grant Institution Name,"Harvard University, Massachusetts Institute of Technolog Grant Institution Alias,"Harvard, MIT" Grant Investigator,"Dr. John Smith, Dr. Jane Doe" Grant Consortium Name,CSBC -GrantView_id,GrantView_12345 +GrantView_id,CA202177 Grant Synapse Team,https://www.synapse.org/#!Team:123456 Grant Synapse Project,https://www.synapse.org/#!Synapse:syn12345678 Grant Start Date,2021-01-01 diff --git a/modules/person/exampleColumn.csv b/modules/person/exampleColumn.csv index 7c1e3daa..7338fdaa 100644 --- a/modules/person/exampleColumn.csv +++ b/modules/person/exampleColumn.csv @@ -15,6 +15,6 @@ Person Grant Number,CA202177 Person Consortium Name,PDMC Person Publications,"23761710,23761712,23762511" Person Datasets,GSE12345 -Person Tools,"R Studio, Python, Jupyter Notebook" +Person Tools,"CCKP_Tool_456, CCKP_Tool_789" Person Educational Resources,Nan -PersonView_id,PersonView_12345 +PersonView_id,23761710 diff --git a/modules/publication/exampleColumn.csv b/modules/publication/exampleColumn.csv index cf9d17b6..47255556 100644 --- a/modules/publication/exampleColumn.csv +++ b/modules/publication/exampleColumn.csv @@ -14,5 +14,5 @@ Publication Tissue,Brain Publication Accessibility,Open Access Publication View,Online Publication Grant Number,CA202123 -Publication Dataset Alias,"GSE45678, DOI:10.1000/exampledataset" +Publication Dataset Alias,"GSE45678" PublicationView_id,PublicationView_45678 diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index f600c968..c7693942 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -1,9 +1,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like @@ -11,7 +9,6 @@ DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like -DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,FALSE,,,,,num DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,FALSE,,,,,num @@ -20,10 +17,8 @@ DSP Planned Upload Date,"A non-binding, estimated date by which the files are ex DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url -DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like -DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like diff --git a/modules/sharingPlans/exampleColumn.csv b/modules/sharingPlans/exampleColumn.csv index 21a053bb..7885d41e 100644 --- a/modules/sharingPlans/exampleColumn.csv +++ b/modules/sharingPlans/exampleColumn.csv @@ -1,13 +1,12 @@ Attribute,Example DataDSP,NaN DSP Dataset Name,DSP_Dataset_Lung_Research_2021 -DSP Dataset Alias,Syn123456 DSP Dataset Assay,3D Bioprinting DSP Dataset Species,Asian Elephant DSP Dataset Tumor Type,Lung Carcinoma DSP Dataset Tissue,Brain DSP Dataset File Formats,CSV -DataDSP_id,DataDSP_56789 +DataDSP_id,CA261717-DSP-1 DSP Dataset Level,Level 3 DSP Number of Files,25 DSP Number of Samples,50000 @@ -16,9 +15,7 @@ DSP Storage Size,16 GB DSP Planned Upload Date,2022-12-01 DSP Planned Release Date,01/25/2023 DSP Dataset Grant Number,CA209971 -DSP Dataset Url,https://www.example.com/dataset/dsp1234 DSP Data Use Codes,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." DSP IRB Form,"DSP IRB Form V2.0, 2020" DSP Dataset Description,A quick description of your data sharing plan. -DSP Dataset Destination,"/home/user/datasets/dsp_output" -DSP Dataset Metadata,"https://example.com/metadata-template-1" \ No newline at end of file +DSP Dataset Destination,"Synapse" \ No newline at end of file diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index c43afcfc..9d4d952f 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -1,6 +1,5 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, Study Name,Name of the study,,,TRUE,,,,,str Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like @@ -8,11 +7,9 @@ Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived conten Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, -Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, -Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, diff --git a/modules/study/exampleColumn.csv b/modules/study/exampleColumn.csv index 901ed36b..a74caaae 100644 --- a/modules/study/exampleColumn.csv +++ b/modules/study/exampleColumn.csv @@ -4,7 +4,7 @@ Study Name,"Effects of Diet and Exercise on Cancer" Study Description,"Analysis of Cancerous Cell Response during Exercise" Study Investigator,Dr. Jane Smith Study Reuse Statement,"Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced." -Study_id,STUDY_2021_01Biology +Study_id,CA261717-CancerResearch-7-2024 Study Number of Participants,5000 Study De-identification Method Type,Manual Study De-identification Method Description,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index 949388f4..8431178b 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -39,7 +39,5 @@ Tool Topic,"General scientific domain the software serves, or other general cate Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,FALSE,,,,biotoolsschema,list like Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,FALSE,,,,biotoolsschema, Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, -Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url -Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url From af721a50021a739cce8acfe0870cf0e39c91085f Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 13 Mar 2025 14:44:19 -0700 Subject: [PATCH 043/106] Update annotationProperty.csv Add attribute Biospecimen Treatment Type --- modules/biospecimen/annotationProperty.csv | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/modules/biospecimen/annotationProperty.csv b/modules/biospecimen/annotationProperty.csv index 1535a85a..28471ff8 100644 --- a/modules/biospecimen/annotationProperty.csv +++ b/modules/biospecimen/annotationProperty.csv @@ -1,5 +1,5 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, +Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Treatment Type, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, Biospecimen_id,"Unique ID associated with a biosample, used as a key for record linking and updates",,,TRUE,,,,MC2,unique Biospecimen Type Category,The general category of this biospecimen.,"Analyte, Ascites, Blood, Bone Marrow, Cells, Fluids, Mouth Rinse, Sputum, Stool, Tissue, Urine",,TRUE,,,,HTAN, Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,TRUE,,,,HTAN, @@ -35,3 +35,4 @@ Biospecimen Primary Site,Primary site in the body associated with the primary di Biospecimen Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, Biospecimen Treatment Response,Text term that describes the treatment response of a model or patient from which this specimen was derived.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, Biospecimen Incidence Type,Text term describing a change in disease status associated with the collection of this specimen. ,"Primary, Progression, Recurrence, Metastasis, Remission, No Disease",,FALSE,,,,CDS v5.0.4/Diagnosis, +Biospecimen Treatment Type,Text term that describes the kind of treatment administered.,,,FALSE,,,,CDS v5.0.4/Treatment,list like From 941fd1eaa7d0c95f56136baae15047d545cb2389 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 13 Mar 2025 14:44:24 -0700 Subject: [PATCH 044/106] Update mapping.yaml --- modules/mapping.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/modules/mapping.yaml b/modules/mapping.yaml index 8313f49e..7ce77692 100644 --- a/modules/mapping.yaml +++ b/modules/mapping.yaml @@ -47,6 +47,8 @@ src: biospecimen/specimenIncidence.csv - name: Biospecimen Acquisition Method src: biospecimen/acquisitionMethod.csv + - name: Biospecimen Treatment Type + src: shared/treatmentType.csv consortium: - name: Consortium Funding Agency From b2d04120ff80269062d8e3cba2d4d7d6b461e56b Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 13 Mar 2025 16:37:13 -0700 Subject: [PATCH 045/106] Add iconTag mappings for MC2 assays (#177) To help prepare resource content tags for the CCKP, this file relates valid values for assay with high level categorical labels. This is intended to be used as input during portal sync operations. --- modules/shared/mc2_iconTag_map_3-4-25.csv | 381 ++++++++++++++++++++++ 1 file changed, 381 insertions(+) create mode 100644 modules/shared/mc2_iconTag_map_3-4-25.csv diff --git a/modules/shared/mc2_iconTag_map_3-4-25.csv b/modules/shared/mc2_iconTag_map_3-4-25.csv new file mode 100644 index 00000000..7fdbe616 --- /dev/null +++ b/modules/shared/mc2_iconTag_map_3-4-25.csv @@ -0,0 +1,381 @@ +term,label,Secondary Labels,Term Type,Notes +Western Blotting,bioChemicalPhysical,,"Method, Data", +ELISA,bioChemicalPhysical,,"Method, Data", +Migration Assay,bioChemicalPhysical,,"Method, Data", +Cell Proliferation Assay,bioChemicalPhysical,,"Method, Data", +Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Colorimetric Cell Viability Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", +Immunoprecipitation,bioChemicalPhysical,,Method, +Invasion Assay,bioChemicalPhysical,Cell Profiling,"Method, Data", +Rheometry,bioChemicalPhysical,Cell Profiling,"Method, Data", +Apoptosis Assay,bioChemicalPhysical,,"Method, Data", +Luciferase Reporter Assay,bioChemicalPhysical,,"Method, Data", +Nuclear Magnetic Resonance,bioChemicalPhysical,,"Method, Data", +Co-Immunoprecipitation,bioChemicalPhysical,,Method, +Cytotoxicity Assay,bioChemicalPhysical,,"Method, Data", +Transwell Assay,bioChemicalPhysical,,"Method, Data", +High Throughput Screening,bioChemicalPhysical,,Method, +Enzyme Activity Assay,bioChemicalPhysical,,"Method, Data", +Traction Force Microscopy,bioChemicalPhysical,Microscopy,"Method, Data", +Binding Assay,bioChemicalPhysical,,"Method, Data", +Proximity Ligation Assay,bioChemicalPhysical,,"Method, Data", +X-Ray Crystallography,bioChemicalPhysical,,"Method, Data", +Pull-Down Assay,bioChemicalPhysical,,"Method, Data", +Co-culture Assay,bioChemicalPhysical,,"Method, Data", +Cryo-Electron Microscopy,bioChemicalPhysical,Structure Determination,"Method, Data", +Dynamic Light Scattering,bioChemicalPhysical,,Method, +Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Magnetic Tweezers,bioChemicalPhysical,,Method, +Phagocytosis Assay,bioChemicalPhysical,,"Method, Data", +Size Exclusion Chromatography,bioChemicalPhysical,,"Method, Data", +Soft Agar Assay,bioChemicalPhysical,,"Method, Data", +Fluorescence Correlation Spectroscopy,bioChemicalPhysical,,"Method, Data", +Forster Resonance Energy Transfer,bioChemicalPhysical,,"Method, Data", +Cell Adhesion Assay,bioChemicalPhysical,,"Method, Data", +In Vivo Bioluminescence,bioChemicalPhysical,,"Method, Data", +CellTiter-Glo Luminescent Cell Viability Assay,bioChemicalPhysical,,"Method, Data", +Fluorescence Recovery After Photo-Bleaching,bioChemicalPhysical,,"Method, Data", +Fourier-Transform Infrared Spectroscopy,bioChemicalPhysical,,"Method, Data", +In Vitro Cell Killing Assay,bioChemicalPhysical,,"Method, Data", +Permeability Assay,bioChemicalPhysical,,"Method, Data", +Raman Spectroscopy,bioChemicalPhysical,,"Method, Data", +Partial Wave Spectroscopy,bioChemicalPhysical,,"Method, Data", +Single Cell Gel Electrophoresis,bioChemicalPhysical,,"Method, Data", +Surface Plasmon Resonance,bioChemicalPhysical,,"Method, Data", +Enzyme-Linked Immunospot Assay,bioChemicalPhysical,,"Method, Data", +Small-Angle X-ray Scattering,bioChemicalPhysical,,"Method, Data", +Cell Cycle Assay,bioChemicalPhysical,,"Method, Data", +Chemotaxis Assay,bioChemicalPhysical,,"Method, Data", +Electrophoretic Mobility Shift Assay,bioChemicalPhysical,,"Method, Data", +Fluorescent Cell Barcoding,bioChemicalPhysical,,Method, +Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,bioChemicalPhysical,,"Method, Data", +Antitumor Drug Screening Assay,bioChemicalPhysical,,"Method, Data", +Atomic Absorption Spectrophotometry,bioChemicalPhysical,,"Method, Data", +ATP Bioluminescence Assay,bioChemicalPhysical,,"Method, Data", +Bio-Layer Interferometry,bioChemicalPhysical,,"Method, Data", +Dye Endocytosis Assay,bioChemicalPhysical,,"Method, Data", +Electron Paramagnetic Resonance Spectroscopy,bioChemicalPhysical,,"Method, Data", +MULTI-Seq,bioChemicalPhysical,,"Method, Data", +Reverse-Phase High-Performance liquid Chromatography,bioChemicalPhysical,,"Method, Data", +Single Molecule Forster Resonance Energy Transfer,bioChemicalPhysical,,Method, +Stimulated Raman Scattering,bioChemicalPhysical,,"Method, Data", +Survival Analysis,bioChemicalPhysical,,"Method, Data", +Thermal Shift Assay,bioChemicalPhysical,,"Method, Data", +Wound-Healing Assay,bioChemicalPhysical,,"Method, Data", +Angiogenesis Assay,bioChemicalPhysical,,"Method, Data", +Atomic Absorption Spectroscopy,bioChemicalPhysical,,"Method, Data", +Circular Dichroism Spectroscopy,bioChemicalPhysical,,"Method, Data", +Differential Scanning Fluorimetry,bioChemicalPhysical,,"Method, Data", +Dynamic Force Spectroscopy,bioChemicalPhysical,,"Method, Data", +Mammosphere Formation Assay,bioChemicalPhysical,,"Method, Data", +MEMA Cell Growth Assay,bioChemicalPhysical,,"Method, Data", +Micropipette Adhesion Assay,bioChemicalPhysical,,"Method, Data", +Optical Emission Spectroscopy,bioChemicalPhysical,,"Method, Data", +Optogenetic Assay,bioChemicalPhysical,,"Method, Data", +RAS Protein Family Activation Assay,bioChemicalPhysical,,"Method, Data", +Suspended Microchannel Resonator,bioChemicalPhysical,,Method, +Bioelectrochemical Analysis,bioChemicalPhysical,,"Method, Data", +Cell Fractionation,bioChemicalPhysical,,Method, +Cell-spreading Assay,bioChemicalPhysical,,"Method, Data", +Chemiluminescent Assay,bioChemicalPhysical,,"Method, Data", +Clonality Analysis,bioChemicalPhysical,,"Method, Data", +Cytometric Bead Array Assay,bioChemicalPhysical,,"Method, Data", +Efferocytosis Assay,bioChemicalPhysical,,"Method, Data", +Electron Diffraction,bioChemicalPhysical,,Method, +Endotoxin Assay,bioChemicalPhysical,,"Method, Data", +Energy-Dispersive X-Ray Spectroscopy,bioChemicalPhysical,,"Method, Data", +Gelatin Zymography,bioChemicalPhysical,,"Method, Data", +Graphite Furnace Atomic Absorption Spectrometry,bioChemicalPhysical,,"Method, Data", +Hydrophilic Interaction Chromatography,bioChemicalPhysical,,"Method, Data", +In Vitro Translation,bioChemicalPhysical,,Method, +In-Cell Western Assay,bioChemicalPhysical,,"Method, Data", +Isothermal Titration Calorimetry,bioChemicalPhysical,,"Method, Data", +Macrophage Polarization Assay,bioChemicalPhysical,,"Method, Data", +Metastatic Colonization Assay,bioChemicalPhysical,,"Method, Data", +Microcontact Printing,bioChemicalPhysical,,Method, +Multi-Angle Light Scattering,bioChemicalPhysical,,"Method, Data", +Paraquat Survival Assay,bioChemicalPhysical,,"Method, Data", +Photolithography,bioChemicalPhysical,,Method, +Scratch Assay,bioChemicalPhysical,,"Method, Data", +SDS-PAGE,bioChemicalPhysical,,"Method, Data", +Single Cell Cytokine Detection Chip Assay,bioChemicalPhysical,,"Method, Data", +Single-Cell Barcode Chip,bioChemicalPhysical,,"Method, Data", +Surveyor Nuclease Assay,bioChemicalPhysical,,"Method, Data", +Target Engagement Assay,bioChemicalPhysical,,"Method, Data", +Thin-Layer Chromatography,bioChemicalPhysical,,"Method, Data", +Time-Correlated Single Photon Counting,bioChemicalPhysical,,"Method, Data", +UV Photocrosslinking,bioChemicalPhysical,,Method, +Vibrational Spectroscopy,bioChemicalPhysical,,"Method, Data", +X-Ray Diffraction,bioChemicalPhysical,,Method, +Spectroscopy,bioChemicalPhysical,,Method,Not sure how to label this one +Immobilized Metal Affinity Chromatography,bioChemicalPhysical,,Method, +Magnetic Resonance Imaging,clinical,Imaging,"Method, Data", +Computed Tomography,clinical,Imaging,"Method, Data", +Transmission Electron Microscopy,clinical,Imaging,"Method, Data", +Immunotherapy,clinical,,Method,Not sure about this one +Positron Emission Tomography,clinical,Imaging,"Method, Data", +Clinical Study,clinical,,"Method, Data", +PET-CT,clinical,,"Method, Data", +Dynamic Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", +Micro-computed Tomography,clinical,,"Method, Data", +Optical Coherence Tomography,clinical,,"Method, Data", +Questionnaire,clinical,,Method, +Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging,clinical,,"Method, Data", +Epidemiological Method,clinical,,Method, +Multiplexed Ion Beam Imaging,clinical,,"Method, Data", +Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", +Ultrasound Imaging,clinical,,"Method, Data", +X-Ray Micro-Computed Tomography,clinical,,"Method, Data", +Cryo-Electron Tomography,clinical,,"Method, Data", +Quantitative Point Accumulation for Imaging in Nanoscale Topography,clinical,,"Method, Data", +Computational Tool,computationalTool,"In silico, Data Analysis",Method, +Data Integration,dataReuse,,Method,This typically indicates that the resource included secondary analysis/integration of publicly available data +ChIP-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +ATAC-Seq,epigenomeProfiling,"Sequencing, Bulk, Epigenome, DNA Accessibility","Method, Data", +Hi-C,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Chromatin Conformation","Method, Data", +DNA Methylation Array,epigenomeProfiling,"Microarray, Methylation","Method, Data", +Single Cell ATAC-Seq,epigenomeProfiling,"Sequencing, Single-cell, Epigenome, DNA Accessibility","Method, Data", +Bisulfite Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Methylation","Method, Data", +ChIP-qPCR assay,epigenomeProfiling,"PCR, Bulk, DNA, Epigenome, Protein Localization","Method, Data", +CUT&RUN,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +CUT&Tag-Sequencing,epigenomeProfiling,"Sequencing, Bulk, Epigenome, Protein Localization","Method, Data", +Reduced Representation Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", +3C,epigenomeProfiling,,"Method, Data", +ChIP-PCR,epigenomeProfiling,,"Method, Data", +MNase-Seq,epigenomeProfiling,,"Method, Data", +5C,epigenomeProfiling,,"Method, Data", +ChIA-PET,epigenomeProfiling,,"Method, Data", +HiChIP,epigenomeProfiling,,"Method, Data", +Methyl Binding Domain Sequencing,epigenomeProfiling,,"Method, Data", +Whole Genome Bisulfite Sequencing,epigenomeProfiling,,"Method, Data", +3C-qPCR,epigenomeProfiling,,"Method, Data", +4C,epigenomeProfiling,,"Method, Data", +Cross-Linking Immunoprecipitation High-throughput Sequencing,epigenomeProfiling,,"Method, Data", +eCLIP-Seq,epigenomeProfiling,,"Method, Data", +CLIP-qPCR,epigenomeProfiling,,"Method, Data", +Global Chromatin Profiling,epigenomeProfiling,,"Method, Data", +HL-Chip,epigenomeProfiling,,"Method, Data", +Methylation-Specific PCR,epigenomeProfiling,,Method, +Mint-ChIP,epigenomeProfiling,,"Method, Data", +RNA Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", +Single Cell RNA-Sequencing,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", +RT-qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +qPCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +DNA Gene-Expression Microarray,expressionProfiling,Microarray,"Method, Data", +RT-PCR,expressionProfiling,"PCR, Bulk, RNA","Method, Data", +Targeted Transcriptome Sequencing,expressionProfiling,"Sequencing, Targeted, RNA","Method, Data", +Global Run-On Sequencing,expressionProfiling,"Sequencing, Bulk, RNA","Method, Data", +cDNA Array,expressionProfiling,"Microarray, cDNA",Method, +snRNA-seq,expressionProfiling,"Sequencing, Single-cell, RNA","Method, Data", +MicroRNA Sequencing,expressionProfiling,,"Method, Data", +mRNA Sequencing,expressionProfiling,,"Method, Data", +Gene Set Enrichment Analysis,expressionProfiling,,"Method, Data", +Single-Cell TCR Sequencing,expressionProfiling,,"Method, Data", +Droplet Digital PCR,expressionProfiling,,"Method, Data", +MicroRNA Expression Array,expressionProfiling,,"Method, Data", +10-cell RNA Sequencing,expressionProfiling,,"Method, Data", +3' RNA-seq,expressionProfiling,,"Method, Data", +smFISH,expressionProfiling,,"Method, Data", +smRNA-seq,expressionProfiling,,"Method, Data", +Nm-seq,expressionProfiling,,"Method, Data", +Precision Run-On Sequencing,expressionProfiling,,"Method, Data", +Single-Cell BCR Sequencing,expressionProfiling,,"Method, Data", +Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", +PlateSeq,expressionProfiling,,"Method, Data", +Single Nucleus RNA-Sequencing,expressionProfiling,,"Method, Data", +Southern Blotting,expressionProfiling,,"Method, Data", +CASFISH,expressionProfiling,,"Method, Data", +Direct Long-Read RNA Sequencing,expressionProfiling,,"Method, Data", +L1000 mRNA Profiling Assay,expressionProfiling,,"Method, Data", +QFISH,expressionProfiling,,"Method, Data", +Fluorescent In Situ Sequencing,expressionProfiling,,"Method, Data", +CITE-seq,"expressionProfiling, proteomics",,"Method, Data", +Whole Exome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +Whole Genome Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +FISH,genomeProfiling,"Fluorescence, Probe-based","Method, Data", +In Situ Hybridization,genomeProfiling,"Probe-based, Targeted, Genome","Method, Data", +Targeted Genome Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +Barcode-Seq,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +DNA Sequencing,genomeProfiling,"Sequencing, Bulk, Genome","Method, Data", +Single Nucleotide Polymorphism Array,genomeProfiling,"Microarray, Genetic Variants","Method, Data", +16S Ribosomal Gene Sequencing Assay,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +TCR Sequencing,genomeProfiling,"Sequencing, Targeted, Genome","Method, Data", +Dideoxy Chain Termination DNA Sequencing,genomeProfiling,,"Method, Data", +Tissue Microarray,genomeProfiling,,Method, +ImmunoFISH,genomeProfiling,,Method, +Gene Ontology Enrichment Analysis,genomeProfiling,,"Method, Data", +Single Cell DNA Sequencing,genomeProfiling,,"Method, Data", +DRIP-seq,genomeProfiling,,"Method, Data", +Genotyping,genomeProfiling,,"Method, Data", +Tuba-Seq,genomeProfiling,,"Method, Data", +Nanopore Sequencing,genomeProfiling,,"Method, Data", +Amplicon Sequencing,genomeProfiling,,"Method, Data", +DNase-Seq,genomeProfiling,,"Method, Data", +Drop-Seq,genomeProfiling,,"Method, Data", +Structural Variant Analysis,genomeProfiling,,"Method, Data", +Cell-free Circulating Tumor DNA Assay,genomeProfiling,,"Method, Data", +Comparative Genomic Hybridization,genomeProfiling,,"Method, Data", +FAIRE-Seq,genomeProfiling,,"Method, Data", +Karyotyping,genomeProfiling,,"Method, Data", +Deep Mutational Scanning,genomeProfiling,,"Method, Data", +Imaging,imaging,Microscopy,Method, +Immunohistochemistry Staining Method,imaging,,Method, +Fluorescent Antibody Procedure,imaging,,Method, +Confocal Microscopy,imaging,"Microscopy, Confocal","Method, Data", +Microscopy,imaging,Microscopy,Method, +Fluorescence Microscopy,imaging,"Microscopy, Fluorescence","Method, Data", +Hematoxylin and Eosin Staining Method,imaging,,Method, +Time Lapse Microscopy,imaging,"Microscopy, Time-course","Method, Data", +Cyclic Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", +Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", +Bioluminescence Imaging,imaging,Microscopy,"Method, Data", +Atomic Force Microscopy,imaging,"Microscopy, Atomic Force","Method, Data", +Fluorescence Imaging,imaging,"Microscopy, Fluorescence","Method, Data", +Immunocytochemistry,imaging,,Method, +Immunofluorescent Staining Method,imaging,,Method, +Quantitative Multiplex Immunofluorescence,imaging,"Microscopy, Fluorescence, Multiplexed","Method, Data", +Brightfield Microscopy,imaging,"Microscopy, Brightfield","Method, Data", +Scanning Electron Microscopy,imaging,"Microscopy, Electron","Method, Data", +Multiphoton Microscopy,imaging,,"Method, Data", +Multiscale Light Sheet Microscopy,imaging,Microscopy,"Method, Data", +Multiplexed Immunofluorescence,imaging,,"Method, Data", +Brillouin Microscopy,imaging,,"Method, Data", +Multiplexed Immunohistochemistry,imaging,,Method, +Fluorescence Lifetime Imaging Microscopy,imaging,,"Method, Data", +TIRF Microscopy,imaging,,"Method, Data", +Widefield Fluorescence Microscopy,imaging,,"Method, Data", +Differential Interference Contrast Microscopy,imaging,,"Method, Data", +Second-Harmonic Imaging Microscopy,imaging,,"Method, Data", +Intravital Microscopy,imaging,,"Method, Data", +Single-Molecule Localization Microscopy,imaging,,"Method, Data", +Cytochemical Stain,imaging,,Method, +Super-Resolution Microscopy,imaging,,"Method, Data", +TRAP Staining,imaging,,Method, +Focused Ion Beam Scanning Electron Microscopy,imaging,,"Method, Data", +Lattice Light Sheet Microscopy,imaging,,"Method, Data", +Monolayer Stress Microscopy,imaging,,"Method, Data", +Multiparametric Magnetic Resonance Imaging,imaging,,"Method, Data", +Confocal Reflectance Quantitative Phase Microscopy,imaging,,"Method, Data", +Dark Field Microscopy,imaging,,"Method, Data", +Diffusion Weighted Imaging,imaging,,"Method, Data", +Light Sheet Microscopy,imaging,,"Method, Data", +Single-Molecule Tracking,imaging,,"Method, Data", +Sirius Red Staining,imaging,,Method, +Stimulated Emission Depletion Microscopy,imaging,,"Method, Data", +Stochastic Optical Reconstruction Microscopy,imaging,,"Method, Data", +Trichrome Staining Method,imaging,,Method, +Alcian Blue Staining Method,imaging,,Method, +Bicinchoninic Acid Assay,imaging,,"Method, Data", +Cerenkov Luminescence Imaging,imaging,,"Method, Data", +Field-Emission Scanning Electron Microscopy,imaging,,"Method, Data", +Interference Reflection Microscopy,imaging,,"Method, Data", +Knife-Edge Scanning Microscopy,imaging,,"Method, Data", +Low-Vacuum Scanning Electron Microscopy,imaging,,"Method, Data", +Picrosirius Staining,imaging,,Method, +Scanning Angle Interference Microscopy,imaging,,"Method, Data", +Total Internal Reflection Fluorescence Microscopy,imaging,,"Method, Data", +Computational Modeling,inSilicoModel,Computational,"Method, Data", +Mathematical Modeling,inSilicoModel,Mathematical,"Method, Data", +Statistical Modeling,inSilicoModel,"Mathematical, Statistics",Method, +Molecular Simulations,inSilicoModel,Simulation,"Method, Data", +Deep Learning,inSilicoModel,,Method, +Artificial Intelligence,inSilicoModel,,Method, +Murine Model,modelSystem,Murine,Method, +3D Cell Culture,modelSystem,"Cell Culture, 3D",Method, +Microfluidics,modelSystem,Microfluidics,Method, +CRISPR,modelSystem,Genome Manipulation,Method, +Hydrogels,modelSystem,"Cell Culture, 3D",Method, +Xenograft,modelSystem,,Method, +Tissue Engineering,modelSystem,,Method, +Cell Culture,modelSystem,Cell Culture,Method, +Patient Derived Xenograft,modelSystem,Patient Derived,Method, +Organoid,modelSystem,"Cell Culture, 3D",Method, +In Vitro Model,modelSystem,Cell Culture,Method, +siRNA,modelSystem,Genome Manipulation,Method, +shRNA,modelSystem,Genome Manipulation,Method, +Plasmid Construction,modelSystem,Genome Manipulation,Method,Not sure about this one +Dual-Luciferase Reporter Assay,modelSystem,Biochemical/Biophysical,"Method, Data", +Nanopatterning,modelSystem,,Method, +Reporter Gene Assay,modelSystem,,"Method, Data", +RNAi Screen,modelSystem,,Method, +Allograft,modelSystem,,Method, +Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture,modelSystem,,Method, +Chimeric Antigen Receptor T-Cell Therapy,modelSystem,,Method, +Phylogenetic Analysis,modelSystem,,"Method, Data", +Viral Transduction,modelSystem,,Method, +Synthetic Genetic Array,modelSystem,,Method, +Gene Silencing,modelSystem,,Method, +3D Bioprinting,modelSystem,,Method, +Targeted Therapy Agent,modelSystem,,Method, +Flow Cytometry,proteomics,Cell Sorting,"Method, Data", +Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +Fluorescence Activated Cell Sorting,proteomics,"Cell Profiling, Fluorescence","Method, Data", +Proteomics Assay,proteomics,,"Method, Data", +Liquid Chromatography/Tandem Mass Spectrometry,proteomics,"Mass Spectrometry, Tandem","Method, Data", +Mass Cytometry,proteomics,Cytometry,"Method, Data", +Liquid Chromatography Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +MALDI-TOF Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +Reverse Phase Protein Array,proteomics,,"Method, Data", +Affinity Purification Mass Spectrometry,proteomics,Mass Spectrometry,"Method, Data", +HPLC-MSMS,proteomics,Mass Spectrometry,"Method, Data", +Cytokine Expression Profile,proteomics,,Method, +Ribo-Seq,proteomics,,"Method, Data", +Gas Chromatography Mass Spectrometry,proteomics,,"Method, Data", +Tandem Mass Spectrometry,proteomics,,"Method, Data", +Image Cytometry,proteomics,,"Method, Data", +Metabolite Profiling Assay,proteomics,,"Method, Data", +Inductively-Coupled Plasma Mass Spectrometry,proteomics,,"Method, Data", +Co-Immunoprecipitation Mass Spectrometry,proteomics,,"Method, Data", +Desorption Electrospray Ionization,proteomics,,Method, +Electrospray Ionization Time-of-Flight Mass Spectrometry,proteomics,,"Method, Data", +Label-free Protein Quantification by LC/MS,proteomics,,"Method, Data", +Shotgun Mass Spectrometry,proteomics,,"Method, Data", +Cross-Linking Mass Spectrometry,proteomics,,"Method, Data", +Tandem Mass Tagging,proteomics,,Method, +UPLC-MSMS,proteomics,,"Method, Data", +Collision-Induced Dissociation,proteomics,,Method, +Multi-Isotope Mass Spectrometry,proteomics,,"Method, Data", +NanoString Digital Spatial Profiling,spatialProfiling,"Expression Profiling, Proteomics, Imaging, Probe-based, Targeted, RNA","Method, Data", +Visium Spatial Gene Expression,spatialProfiling,"Expression Profiling, Imaging, Probe-based, Targeted, RNA","Method, Data", +Multiplexed Error-Robust Fluorescence In Situ Hybridization,spatialProfiling,,"Method, Data", +Imaging Mass Cytometry,spatialProfiling,,"Method, Data", +10x Multiome,spatialProfiling,,"Method, Data", +DBiT-Seq,spatialProfiling,,"Method, Data", +Transcription profiling by NanoString,spatialProfiling,,"Method, Data", +Not Applicable,,,None, +Pending Annotation,,,None, +PCR,,,Method,Not sure how to label this one +Next Generation Sequencing,,,Method,Not sure how to label this one +Modeling,,,Method,Not sure how to label this one +TUNEL assay,,,"Method, Data", +Unspecified,,,None, +Magnetically Activated Cell Sorting,,,"Method, Data", +Optical Tweezers,,,Method, +Magnetic Twisting Cytometry,,,"Method, Data", +Micropipette Aspiration,,,Method, +Ribosomal P Protein Antibody Measurement,,,"Method, Data", +Immunoassay,,,Method, +In Vitro Selection,,,Method, +Autoradiography,,,"Method, Data", +Nanowire,,,Method, +RIP,,,"Method, Data", +scCGI-seq,,,"Method, Data", +scNT-Seq,,,"Method, Data", +scSLAM-seq,,,"Method, Data", +Tiling Array,,,Method, +High-Content Screen,,,Method, +MeDIP,,,"Method, Data", +MeRIP-Seq,,,"Method, Data", +Nano-hmC-Seal,,,"Method, Data", +Nested PCR,,,Method, +Optical Stretcher,,,Method, +Photoacoustic Imaging,,,"Method, Data", +RIP-Seq,,,"Method, Data", +seqFISH,,,"Method, Data", +Synthesis,,,Method, +TAB-Seq,,,"Method, Data", +Targeted Error Correction Sequencing,,,"Method, Data", +Virus Plaque Assay,,,"Method, Data", +Von Kossa Staining,,,Method, +Optical Mapping,,,Method, +Synaptophysin Staining Method,,,Method, \ No newline at end of file From 571f65292c2749ee9a7ff808293dd3bf14a4c0ad Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 11:09:38 -0700 Subject: [PATCH 046/106] Update dataset_species.csv --- modules/shared/dataset_species.csv | 1 + 1 file changed, 1 insertion(+) diff --git a/modules/shared/dataset_species.csv b/modules/shared/dataset_species.csv index 27e75880..b1669d5c 100644 --- a/modules/shared/dataset_species.csv +++ b/modules/shared/dataset_species.csv @@ -15,6 +15,7 @@ Human Patient,,,,False,,Dataset Species,,,,,9606.0,,, Human Cell Line,,,,False,,Dataset Species,,,,,9606.0,,, Mouse,,,,False,,species,,NCBITAXON,,,10090.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=info&id=10090,, Multispecies,,,,False,,species,,,,,,,, +Not Applicable,,,,False,,species,,,,,,,, Opossum,,,,False,,species,,NCBITAXON,,,13616.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=info&id=13616,, Rabbit,,,,False,,species,,NCBITAXON,,Oryctolagus cuniculus,9986.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9986&lvl=3&lin=f&keep=1&srchmode=1&unlock,, Rat,,,,False,,species,,NCBITAXON,,,10116.0,https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=info&id=10116,, From d5f7a3b5289f20b1bbc9c2640c2c92660dc6069d Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 12:02:40 -0700 Subject: [PATCH 047/106] Update valid values --- all_valid_values.csv | 1 + modules/biospecimen/annotationProperty.csv | 2 +- modules/dataset/annotationProperty.csv | 2 +- modules/file/annotationProperty.csv | 4 ++-- modules/model/annotationProperty.csv | 2 +- modules/sharingPlans/annotationProperty.csv | 2 +- 6 files changed, 7 insertions(+), 6 deletions(-) diff --git a/all_valid_values.csv b/all_valid_values.csv index 32b617d0..8229ed65 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -76,6 +76,7 @@ dataset_species,Human Patient, dataset_species,Human Cell Line, dataset_species,Mouse, dataset_species,Multispecies, +dataset_species,Not Applicable, dataset_species,Opossum, dataset_species,Rabbit,Oryctolagus cuniculus dataset_species,Rat, diff --git a/modules/biospecimen/annotationProperty.csv b/modules/biospecimen/annotationProperty.csv index 1535a85a..818755a9 100644 --- a/modules/biospecimen/annotationProperty.csv +++ b/modules/biospecimen/annotationProperty.csv @@ -3,7 +3,7 @@ Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Compon Biospecimen_id,"Unique ID associated with a biosample, used as a key for record linking and updates",,,TRUE,,,,MC2,unique Biospecimen Type Category,The general category of this biospecimen.,"Analyte, Ascites, Blood, Bone Marrow, Cells, Fluids, Mouth Rinse, Sputum, Stool, Tissue, Urine",,TRUE,,,,HTAN, Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,TRUE,,,,HTAN, -Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like +Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like Biospecimen Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0, Biospecimen Age at Collection,Age at the time the biospecimen was collected. Please provide the unit in field Biospecimen Age at Collection Unit.,,,FALSE,,,,HTAN,num Biospecimen Age at Collection Unit,Unit associated with age at the time the biospecimen was collected.,,,FALSE,,,,HTAN,str diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index e06dcc05..ac6e5461 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -6,7 +6,7 @@ Dataset Design,The overall design of the dataset.,,,FALSE,,,,, Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index b5c32c97..7b40d791 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -4,7 +4,7 @@ File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, -File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, @@ -17,4 +17,4 @@ File Longitudinal Sequential Time Elapsed,The time elapsed between collecting th File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique -File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like \ No newline at end of file +File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like diff --git a/modules/model/annotationProperty.csv b/modules/model/annotationProperty.csv index ca31a3fb..8b3521ad 100644 --- a/modules/model/annotationProperty.csv +++ b/modules/model/annotationProperty.csv @@ -6,7 +6,7 @@ Model Age Unit,The unit corresponding to the age provided for this model.,,,FALS Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,, Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like -Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like +Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like Model Type,The general label used to identify the model type.,,,FALSE,,,,,str Model Method,The term that describes the general method used to create the model.,,,FALSE,,,,,str Model Source,"The reference organism from which the model was derived, if applicable. This could be a specific Biospecimen Key, Model Key, mouse type, cell line, or other reference. Provide RRID if available, to link to existing cell line information. Do not use this field to designate an Individual as the source of the model.",,,FALSE,,,,,str diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index a5dc35bd..34c2f7dd 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -3,7 +3,7 @@ DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like From fb4d2abe8f72ecad7e012f98857bf7591497b57c Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 12:02:59 -0700 Subject: [PATCH 048/106] Make and build model schematic 24.12.1 --- mc2.model.csv | 1101 +++++++++++++++++++++++----------------------- mc2.model.jsonld | 286 ++++++------ 2 files changed, 703 insertions(+), 684 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index b3fb8d93..5e1ef0d6 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -1,560 +1,549 @@ -Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, -Biospecimen_id,"Unique ID associated with a biosample, used as a key for record linking and updates",,,TRUE,,,,MC2,unique -Biospecimen Type Category,The general category of this biospecimen.,"Analyte, Ascites, Blood, Bone Marrow, Cells, Fluids, Mouth Rinse, Sputum, Stool, Tissue, Urine",,TRUE,,,,HTAN, -Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,TRUE,,,,HTAN, -Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like -Biospecimen Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0, -Biospecimen Age at Collection,Age at the time the biospecimen was collected. Please provide the unit in field Biospecimen Age at Collection Unit.,,,FALSE,,,,HTAN,num -Biospecimen Age at Collection Unit,Unit associated with age at the time the biospecimen was collected.,,,FALSE,,,,HTAN,str -Biospecimen Disease Type,"The type of tumor associated with the specimen. Multiple values permitted, comma separated.","Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,MC2, -Biospecimen Tumor Subtype,"The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.",,,FALSE,,,,MC2/STE,str -Biospecimen Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, -Biospecimen Composition,"The text term used to describe the type(s) of tissue contained in the biospecimen. Multiple values permitted, comma separated.","Additional Primary, Atypia or hyperplasia, Local recurrence, Metastatic, Normal, Normal adjacent, Normal distant, NOS, Not applicable, Not reported, Premalignant, Premalignant - in situ, Primary, Recurrent, Tissue, Tumor post-adjuvant therapy, Tumor post-neoadjuvant therapy, Tumor post-therapy, Tumor specimen from de novo untreated malignancy of the bladder, Unknown, Xenograft",,FALSE,,,,CDS Imaging v1.0,list like -Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,FALSE,,,,CDS Imaging v1.0/multiplex microscopy, -Biospecimen Preservation Method,Text term that represents the method used to preserve the sample.,"Cryopreserved, Cryopreservation in liquid nitrogen - dead tissue, Cryopreservation in dry ice - dead tissue, Cryopreservation in liquid nitrogen - live cells, Formalin fixed paraffin embedded - FFPE, Formalin fixed-unbuffered, Formalin fixed-buffered, Fresh, Fresh dissociated and single cell sorted into plates in NP40 buffer, OCT, Snap Frozen, Frozen, Negative 80 Deg C, Liquid Nitrogen, Fresh dissociated, Fresh dissociated and single cell sorted, Fresh dissociated and single cell sorted into plates, Methacarn fixed paraffin embedded - MFPE, unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, -Biospecimen Anatomic Site,Text term that represents the name of the primary disease site of the submitted tumor sample.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0/non-DICOM pathology, -Biospecimen Site of Resection or Biopsy,The text term used to describe the anatomic site of the resection or biopsy of the patient's malignant disease.,"Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,HTAN, -Biospecimen Site of Origin,"The text term used to describe the anatomic site of origin, of the patient's malignant disease.","Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,HTAN, -Biospecimen Timepoint Type,"Label to identify an event associated with the collection of the biospecimen (e.g. Baseline, End of Treatment, Overall survival, Final). Use Biospecimen Timepoint Offset to indicate the number of post-event days that elapsed before the biospecimen was collected. NO PHI/PII INFORMATION IS ALLOWED.",,,FALSE,,,,HTAN,str -Biospecimen Collection Site,The health care site at which the biospecimen sample was collected.,,,FALSE,,,,MC2/STE,str -Biospecimen Therapeutic Agent,Text identification of the individual agent(s) used as part of a treatment regimen.,"10-Deacetyltaxol, 11C Topotecan, 11D10 AluGel Anti-Idiotype Monoclonal Antibody, 12-Allyldeoxoartemisinin, 13-Deoxydoxorubicin, 14C BMS-275183, 17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521, 2-Deoxy-D-glucose, 2-Ethylhydrazide, 2-Fluoroadenine, 2-Fluorofucose-containing SGN-2FF, 2-Hydroxyestradiol, 2-Hydroxyestrone, 2-Hydroxyflutamide Depot, 2-Hydroxyoleic Acid, 2-Methoxyestradiol, 2-Methoxyestradiol Nanocrystal Colloidal Dispersion, 2-Methoxyestrone, 2-O; 3-O Desulfated Heparin, 2;6-Diaminopurine, 2;6-Dimethoxyquinone, 2'-F-ara-deoxyuridine, 3'-C-ethynylcytidine, 3'-dA Phosphoramidate NUC-7738, 4-Nitroestrone 3-Methyl Ether, 4-Thio-2-deoxycytidine, 4'-Iodo-4'-Deoxydoxorubicin, 5-Aza-4'-thio-2'-deoxycytidine, 5-Fluoro-2-Deoxycytidine, 6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158, 7-Cyanoquinocarcinol, 7-Ethyl-10-Hydroxycamptothecin, 7-Hydroxystaurosporine, 8-Azaguanine, 9-Ethyl 6-Mercaptopurine, 9H-Purine-6Thio-98D, A2A Receptor Antagonist EOS100850, Abagovomab, Abarelix, Abemaciclib, Abemaciclib Mesylate, Abexinostat, Abexinostat Tosylate, Abiraterone, Abiraterone Acetate, Abituzumab, Acai Berry Juice, Acalabrutinib, Acalisib, Aceglatone, Acetylcysteine, Acitretin, Acivicin, Aclacinomycin B, Aclarubicin, Acodazole, Acodazole Hydrochloride, Acolbifene Hydrochloride, Acridine, Acridine Carboxamide, Acronine, Actinium Ac 225 Lintuzumab, Actinium Ac 225-FPI-1434, Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591, Actinomycin C2, Actinomycin C3, Actinomycin F1, Activin Type 2B Receptor Fc Fusion Protein STM 434, Acyclic Nucleoside Phosphonate Prodrug ABI-1968, Ad-RTS-hIL-12, Adagloxad Simolenin, Adavosertib, Adecatumumab, Adenosine A2A Receptor Antagonist AZD4635, Adenosine A2A Receptor Antagonist CS3005, Adenosine A2A Receptor Antagonist NIR178, Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999, Adenosine A2A/A2B Receptor Antagonist AB928, Adenosine A2B Receptor Antagonist PBF-1129, Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201, Adenoviral Brachyury Vaccine ETBX-051, Adenoviral Cancer Vaccine PF-06936308, Adenoviral MUC1 Vaccine ETBX-061, Adenoviral PSA Vaccine ETBX-071, Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001, Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP, Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901, Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE, Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918, Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931, Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3, Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001, Aderbasib, ADH-1, AE37 Peptide/GM-CSF Vaccine, AEE788, Aerosol Gemcitabine, Aerosolized Aldesleukin, Aerosolized Liposomal Rubitecan, Afatinib, Afatinib Dimaleate, Afimoxifene, Afuresertib, Agatolimod Sodium, Agerafenib, Aglatimagene Besadenovec, Agonistic Anti-CD40 Monoclonal Antibody ADC-1013, Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949, Agonistic Anti-OX40 Monoclonal Antibody MEDI6469, AKR1C3-activated Prodrug OBI-3424, AKT 1/2 Inhibitor BAY1125976, AKT Inhibitor ARQ 092, Akt Inhibitor LY2780301, Akt Inhibitor MK2206, Akt Inhibitor SR13668, Akt/ERK Inhibitor ONC201, Alacizumab Pegol, Alanosine, Albumin-binding Cisplatin Prodrug BTP-114, Aldesleukin, Aldoxorubicin, Alectinib, Alefacept, Alemtuzumab, Alestramustine, Alflutinib Mesylate, Algenpantucel-L, Alisertib, Alitretinoin, ALK Inhibitor, ALK Inhibitor ASP3026, ALK Inhibitor PLB 1003, ALK Inhibitor RO5424802, ALK Inhibitor TAE684, ALK Inhibitor WX-0593, ALK-2 Inhibitor TP-0184, ALK-FAK Inhibitor CEP-37440, ALK/c-Met Inhibitor TQ-B3139, ALK/FAK/Pyk2 Inhibitor CT-707, ALK/ROS1/Met Inhibitor TQ-B3101, ALK/TRK Inhibitor TSR-011, Alkotinib, Allodepleted T Cell Immunotherapeutic ATIR101, Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715, Allogeneic Anti-BCMA-CAR T-cells PBCAR269A, Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells, Allogeneic Anti-CD19 CAR T-cells ALLO-501A, Allogeneic Anti-CD19 Universal CAR-T Cells CTA101, Allogeneic Anti-CD19-CAR T-cells PBCAR0191, Allogeneic Anti-CD20 CAR T-cells LUCAR-20S, Allogeneic Anti-CD20-CAR T-cells PBCAR20A, Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22, Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100, Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001, Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001, Allogeneic Cellular Vaccine 1650-G, Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120, Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130, Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A, Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM, Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine, Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo, Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2, Allogeneic Irradiated Melanoma Cell Vaccine CSF470, Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307, Allogeneic Melanoma Vaccine AGI-101H, Allogeneic Natural Killer Cell Line MG4101, Allogeneic Natural Killer Cell Line NK-92, Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01, Allogeneic Renal Cell Carcinoma Vaccine MGN1601, Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19, Allosteric ErbB Inhibitor BDTX-189, Allovectin-7, Almurtide, Alobresib, Alofanib, Alpelisib, Alpha Galactosylceramide, Alpha V Beta 1 Inhibitor ATN-161, Alpha V Beta 8 Antagonist PF-06940434, alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801, Alpha-Gal AGI-134, Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H, Alpha-Thioguanine Deoxyriboside, Alpha-tocopheryloxyacetic Acid, Alsevalimab, Altiratinib, Altretamine, Alvespimycin, Alvespimycin Hydrochloride, Alvocidib, Alvocidib Hydrochloride, Alvocidib Prodrug TP-1287, Amatuximab, Ambamustine, Ambazone, Amblyomin-X, Amcasertib, Ametantrone, Amifostine, Amino Acid Injection, Aminocamptothecin, Aminocamptothecin Colloidal Dispersion, Aminoflavone Prodrug AFP464, Aminopterin, Aminopterin Sodium, Amivantamab, Amolimogene Bepiplasmid, Amonafide L-Malate, Amrubicin, Amrubicin Hydrochloride, Amsacrine, Amsacrine Lactate, Amsilarotene, Amustaline, Amustaline Dihydrochloride, Amuvatinib, Amuvatinib Hydrochloride, Anakinra, Anastrozole, Anaxirone, Ancitabine, Ancitabine Hydrochloride, Andecaliximab, Androgen Antagonist APC-100, Androgen Receptor Antagonist BAY 1161116, Androgen Receptor Antagonist SHR3680, Androgen Receptor Antagonist TAS3681, Androgen Receptor Antagonist TRC253, Androgen Receptor Antisense Oligonucleotide AZD5312, Androgen Receptor Antisense Oligonucleotide EZN-4176, Androgen Receptor Degrader ARV-110, Androgen Receptor Degrader CC-94676, Androgen Receptor Downregulator AZD3514, Androgen Receptor Inhibitor EPI-7386, Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118, Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10, Andrographolide, Androstane Steroid HE3235, Anetumab Ravtansine, Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241, Angiogenesis Inhibitor GT-111, Angiogenesis Inhibitor JI-101, Angiogenesis/Heparanase Inhibitor PG545, Angiopoietin-2-specific Fusion Protein PF-04856884, Anhydrous Enol-oxaloacetate, Anhydrovinblastine, Aniline Mustard, Anlotinib Hydrochloride, Annamycin, Annamycin Liposomal, Annonaceous Acetogenins, Ansamitomicin P-3, Anthramycin, Anthrapyrazole, Anti c-KIT Antibody-drug Conjugate LOP628, Anti-5T4 Antibody-drug Conjugate ASN004, Anti-5T4 Antibody-Drug Conjugate PF-06263507, Anti-5T4 Antibody-drug Conjugate SYD1875, Anti-A33 Monoclonal Antibody KRN330, Anti-A5B1 Integrin Monoclonal Antibody PF-04605412, Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087, Anti-AG7 Antibody Drug Conjugate AbGn-107, Anti-AGS-16 Monoclonal Antibody AGS-16M18, Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME, Anti-AGS-8 Monoclonal Antibody AGS-8M4, Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B, Anti-alpha5beta1 Integrin Antibody MINT1526A, Anti-ANG2 Monoclonal Antibody MEDI-3617, Anti-angiopoietin Monoclonal Antibody AMG 780, Anti-APRIL Monoclonal Antibody BION-1301, Anti-AXL Fusion Protein AVB-S6-500, Anti-AXL/PBD Antibody-drug Conjugate ADCT-601, Anti-B7-H3 Antibody DS-5573a, Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a, Anti-B7-H4 Monoclonal Antibody FPA150, Anti-B7H3 Antibody-drug Conjugate MGC018, Anti-BCMA Antibody SEA-BCMA, Anti-BCMA Antibody-drug Conjugate AMG 224, Anti-BCMA Antibody-drug Conjugate CC-99712, Anti-BCMA Antibody-drug Conjugate GSK2857916, Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA, Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459, Anti-BCMA/CD3 BiTE Antibody AMG 420, Anti-BCMA/CD3 BiTE Antibody AMG 701, Anti-BCMA/CD3 BiTE Antibody REGN5458, Anti-BCMA/PBD ADC MEDI2228, Anti-BTLA Monoclonal Antibody TAB004, Anti-BTN3A Agonistic Monoclonal Antibody ICT01, Anti-c-fms Monoclonal Antibody AMG 820, Anti-c-KIT Monoclonal Antibody CDX 0158, Anti-c-Met Antibody-drug Conjugate HTI-1066, Anti-c-Met Antibody-drug Conjugate TR1801, Anti-c-Met Monoclonal Antibody ABT-700, Anti-c-Met Monoclonal Antibody ARGX-111, Anti-c-Met Monoclonal Antibody HLX55, Anti-c-MET Monoclonal Antibody LY2875358, Anti-C-met Monoclonal Antibody SAIT301, Anti-C4.4a Antibody-Drug Conjugate BAY1129980, Anti-C5aR Monoclonal Antibody IPH5401, Anti-CA19-9 Monoclonal Antibody 5B1, Anti-CA6-DM4 Immunoconjugate SAR566658, Anti-CCR7 Antibody-drug Conjugate JBH492, Anti-CD117 Monoclonal Antibody JSP191, Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1, Anti-CD123 ADC IMGN632, Anti-CD123 Monoclonal Antibody CSL360, Anti-CD123 Monoclonal Antibody KHK2823, Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404, Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A, Anti-CD123/CD3 Bispecific Antibody APVO436, Anti-CD123/CD3 Bispecific Antibody JNJ-63709178, Anti-CD123/CD3 BiTE Antibody SAR440234, Anti-CD137 Agonistic Monoclonal Antibody ADG106, Anti-CD137 Agonistic Monoclonal Antibody AGEN2373, Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017, Anti-CD137 Agonistic Monoclonal Antibody CTX-471, Anti-CD137 Agonistic Monoclonal Antibody LVGN6051, Anti-CD157 Monoclonal Antibody MEN1112, Anti-CD166 Probody-drug Conjugate CX-2009, Anti-CD19 Antibody-drug Conjugate SGN-CD19B, Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003, Anti-CD19 iCAR NK Cells, Anti-CD19 Monoclonal Antibody DI-B4, Anti-CD19 Monoclonal Antibody MDX-1342, Anti-CD19 Monoclonal Antibody MEDI-551, Anti-CD19 Monoclonal Antibody XmAb5574, Anti-CD19-DM4 Immunoconjugate SAR3419, Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL, Anti-CD19/CD22 CAR NK Cells, Anti-CD19/CD3 BiTE Antibody AMG 562, Anti-CD19/CD3 Tetravalent Antibody AFM11, Anti-CD20 Monoclonal Antibody B001, Anti-CD20 Monoclonal Antibody BAT4306F, Anti-CD20 Monoclonal Antibody MIL62, Anti-CD20 Monoclonal Antibody PRO131921, Anti-CD20 Monoclonal Antibody SCT400, Anti-CD20 Monoclonal Antibody TL011, Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002, Anti-CD20-engineered Toxin Body MT-3724, Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323, Anti-CD20/CD3 Monoclonal Antibody REGN1979, Anti-CD20/CD3 Monoclonal Antibody XmAb13676, Anti-CD205 Antibody-drug Conjugate OBT076, Anti-CD22 ADC TRPH-222, Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S, Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A, Anti-CD25 Monoclonal Antibody RO7296682, Anti-CD25-PBD Antibody-drug Conjugate ADCT-301, Anti-CD26 Monoclonal Antibody YS110, Anti-CD27 Agonistic Monoclonal Antibody MK-5890, Anti-CD27L Antibody-Drug Conjugate AMG 172, Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1), Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135, Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05, Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564, Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119, Anti-CD3/CD20 Bispecific Antibody GEN3013, Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424, Anti-CD3/CD7-Ricin Toxin A Immunotoxin, Anti-CD30 Monoclonal Antibody MDX-1401, Anti-CD30 Monoclonal Antibody XmAb2513, Anti-CD30/CD16A Monoclonal Antibody AFM13, Anti-CD30/DM1 Antibody-drug Conjugate F0002, Anti-CD32B Monoclonal Antibody BI-1206, Anti-CD33 Antibody-drug Conjugate IMGN779, Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564, Anti-CD33 Monoclonal Antibody BI 836858, Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633, Anti-CD33/CD3 Bispecific Antibody GEM 333, Anti-CD33/CD3 Bispecific Antibody JNJ-67571244, Anti-CD33/CD3 BiTE Antibody AMG 330, Anti-CD33/CD3 BiTE Antibody AMG 673, Anti-CD352 Antibody-drug Conjugate SGN-CD352A, Anti-CD37 Antibody-Drug Conjugate IMGN529, Anti-CD37 Bispecific Monoclonal Antibody GEN3009, Anti-CD37 MMAE Antibody-drug Conjugate AGS67E, Anti-CD37 Monoclonal Antibody BI 836826, Anti-CD38 Antibody-drug Conjugate STI-6129, Anti-CD38 Monoclonal Antibody MOR03087, Anti-CD38 Monoclonal Antibody SAR442085, Anti-CD38 Monoclonal Antibody TAK-079, Anti-CD38-targeted IgG4-attenuated IFNa TAK-573, Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257, Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342, Anti-CD39 Monoclonal Antibody SRF617, Anti-CD39 Monoclonal Antibody TTX-030, Anti-CD40 Agonist Monoclonal Antibody ABBV-927, Anti-CD40 Agonist Monoclonal Antibody CDX-1140, Anti-CD40 Monoclonal Antibody Chi Lob 7/4, Anti-CD40 Monoclonal Antibody SEA-CD40, Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042, Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428, Anti-CD40L Fc-Fusion Protein BMS-986004, Anti-CD44 Monoclonal Antibody RO5429083, Anti-CD45 Monoclonal Antibody AHN-12, Anti-CD46 Antibody-drug Conjugate FOR46, Anti-CD47 ADC SGN-CD47M, Anti-CD47 Monoclonal Antibody AO-176, Anti-CD47 Monoclonal Antibody CC-90002, Anti-CD47 Monoclonal Antibody Hu5F9-G4, Anti-CD47 Monoclonal Antibody IBI188, Anti-CD47 Monoclonal Antibody IMC-002, Anti-CD47 Monoclonal Antibody SHR-1603, Anti-CD47 Monoclonal Antibody SRF231, Anti-CD47 Monoclonal Antibody TJC4, Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801, Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A, Anti-CD52 Monoclonal Antibody ALLO-647, Anti-CD70 Antibody-Drug Conjugate MDX-1203, Anti-CD70 Antibody-drug Conjugate SGN-CD70A, Anti-CD70 CAR-expressing T Lymphocytes, Anti-CD70 Monoclonal Antibody MDX-1411, Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029, Anti-CD73 Monoclonal Antibody BMS-986179, Anti-CD73 Monoclonal Antibody CPI-006, Anti-CD73 Monoclonal Antibody NZV930, Anti-CD73 Monoclonal Antibody TJ4309, Anti-CD74 Antibody-drug Conjugate STRO-001, Anti-CD98 Monoclonal Antibody IGN523, Anti-CDH6 Antibody-drug Conjugate HKT288, Anti-CEA BiTE Monoclonal Antibody AMG211, Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody, Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2, Anti-CEACAM1 Monoclonal Antibody CM-24, Anti-CEACAM5 Antibody-Drug Conjugate SAR408701, Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47, Anti-CEACAM6 Antibody BAY1834942, Anti-claudin18.2 Monoclonal Antibody AB011, Anti-Claudin18.2 Monoclonal Antibody TST001, Anti-CLDN6 Monoclonal Antibody ASP1650, Anti-CLEC12A/CD3 Bispecific Antibody MCLA117, Anti-CLEVER-1 Monoclonal Antibody FP-1305, Anti-CSF1 Monoclonal Antibody PD-0360324, Anti-CSF1R Monoclonal Antibody IMC-CS4, Anti-CSF1R Monoclonal Antibody SNDX-6352, Anti-CTGF Monoclonal Antibody FG-3019, Anti-CTLA-4 Monoclonal Antibody ADG116, Anti-CTLA-4 Monoclonal Antibody ADU-1604, Anti-CTLA-4 Monoclonal Antibody AGEN1181, Anti-CTLA-4 Monoclonal Antibody BCD-145, Anti-CTLA-4 Monoclonal Antibody HBM4003, Anti-CTLA-4 Monoclonal Antibody MK-1308, Anti-CTLA-4 Monoclonal Antibody ONC-392, Anti-CTLA-4 Monoclonal Antibody REGN4659, Anti-CTLA-4 Probody BMS-986288, Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217, Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841, Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015, Anti-CTLA4 Antibody Fc Fusion Protein KN044, Anti-CTLA4 Monoclonal Antibody BMS-986218, Anti-CXCR4 Monoclonal Antibody PF-06747143, Anti-Denatured Collagen Monoclonal Antibody TRC093, Anti-DKK-1 Monoclonal Antibody LY2812176, Anti-DKK1 Monoclonal Antibody BHQ880, Anti-DLL3/CD3 BiTE Antibody AMG 757, Anti-DLL4 Monoclonal Antibody MEDI0639, Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83, Anti-DR5 Agonist Monoclonal Antibody TRA-8, Anti-DR5 Agonistic Antibody DS-8273a, Anti-DR5 Agonistic Monoclonal Antibody INBRX-109, Anti-EGFR Monoclonal Antibody CPGJ 602, Anti-EGFR Monoclonal Antibody EMD 55900, Anti-EGFR Monoclonal Antibody GC1118, Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX, Anti-EGFR Monoclonal Antibody HLX-07, Anti-EGFR Monoclonal Antibody Mixture MM-151, Anti-EGFR Monoclonal Antibody RO5083945, Anti-EGFR Monoclonal Antibody SCT200, Anti-EGFR Monoclonal Antibody SYN004, Anti-EGFR TAP Antibody-drug Conjugate IMGN289, Anti-EGFR/c-Met Bispecific Antibody EMB-01, Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372, Anti-EGFR/CD16A Bispecific Antibody AFM24, Anti-EGFR/DM1 Antibody-drug Conjugate AVID100, Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013, Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321, Anti-EGFRvIII Antibody Drug Conjugate AMG 595, Anti-EGFRvIII Immunotoxin MR1-1, Anti-EGFRvIII/CD3 BiTE Antibody AMG 596, Anti-EGP-2 Immunotoxin MOC31-PE, Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F, Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F, Anti-Ep-CAM Monoclonal Antibody ING-1, Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310, Anti-EphA2 Monoclonal Antibody DS-8895a, Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547, Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111, Anti-ErbB3 Antibody ISU104, Anti-ErbB3 Monoclonal Antibody AV-203, Anti-ErbB3 Monoclonal Antibody CDX-3379, Anti-ErbB3 Monoclonal Antibody REGN1400, Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141, Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A, Anti-FAP/Interleukin-2 Fusion Protein RO6874281, Anti-FCRH5/CD3 BiTE Antibody BFCR4350A, Anti-FGFR2 Antibody BAY1179470, Anti-FGFR3 Antibody-drug Conjugate LY3076226, Anti-FGFR4 Monoclonal Antibody U3-1784, Anti-FLT3 Antibody-drug Conjugate AGS62P1, Anti-FLT3 Monoclonal Antibody 4G8-SDIEM, Anti-FLT3 Monoclonal Antibody IMC-EB10, Anti-FLT3/CD3 BiTE Antibody AMG 427, Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002, Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202, Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012, Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962, Anti-GARP Monoclonal Antibody ABBV-151, Anti-GCC Antibody-Drug Conjugate MLN0264, Anti-GCC Antibody-Drug Conjugate TAK-164, Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody, Anti-GD2 Monoclonal Antibody hu14.18K322A, Anti-GD2 Monoclonal Antibody MORAb-028, Anti-GD3 Antibody-drug Conjugate PF-06688992, Anti-GITR Agonistic Monoclonal Antibody ASP1951, Anti-GITR Agonistic Monoclonal Antibody BMS-986156, Anti-GITR Agonistic Monoclonal Antibody INCAGN01876, Anti-GITR Monoclonal Antibody GWN 323, Anti-GITR Monoclonal Antibody MK-4166, Anti-Globo H Monoclonal Antibody OBI-888, Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999, Anti-Glypican 3/CD3 Bispecific Antibody ERY974, Anti-GnRH Vaccine PEP223, Anti-gpA33/CD3 Monoclonal Antibody MGD007, Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a, Anti-gremlin-1 Monoclonal Antibody UCB6114, Anti-GRP78 Monoclonal Antibody PAT-SM6, Anti-HA Epitope Monoclonal Antibody MEDI8852, Anti-HB-EGF Monoclonal Antibody KHK2866, Anti-HBEGF Monoclonal Antibody U3-1565, Anti-hepcidin Monoclonal Antibody LY2787106, Anti-HER-2 Bispecific Antibody KN026, Anti-HER2 ADC DS-8201a, Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702, Anti-HER2 Antibody-drug Conjugate A166, Anti-HER2 Antibody-drug Conjugate ARX788, Anti-HER2 Antibody-drug Conjugate BAT8001, Anti-HER2 Antibody-drug Conjugate DP303c, Anti-HER2 Antibody-drug Conjugate MEDI4276, Anti-HER2 Antibody-drug Conjugate RC48, Anti-HER2 Bi-specific Monoclonal Antibody ZW25, Anti-HER2 Bispecific Antibody-drug Conjugate ZW49, Anti-HER2 Immune Stimulator-antibody Conjugate NJH395, Anti-HER2 Monoclonal Antibody B002, Anti-HER2 Monoclonal Antibody CT-P6, Anti-HER2 Monoclonal Antibody HLX22, Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343, Anti-HER2-DM1 ADC B003, Anti-HER2-DM1 Antibody-drug Conjugate GQ1001, Anti-HER2-vc0101 ADC PF-06804103, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302, Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128, Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522, Anti-HER2/MMAE Antibody-drug Conjugate MRG002, Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A, Anti-HER3 Antibody-drug Conjugate U3 1402, Anti-HER3 Monoclonal Antibody GSK2849330, Anti-HGF Monoclonal Antibody TAK-701, Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968, Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1, Anti-HLA-DR Monoclonal Antibody IMMU-114, Anti-HLA-G Antibody TTX-080, Anti-human GITR Monoclonal Antibody AMG 228, Anti-human GITR Monoclonal Antibody TRX518, Anti-ICAM-1 Monoclonal Antibody BI-505, Anti-ICOS Agonist Antibody GSK3359609, Anti-ICOS Agonist Monoclonal Antibody BMS-986226, Anti-ICOS Monoclonal Antibody KY1044, Anti-ICOS Monoclonal Antibody MEDI-570, Anti-IGF-1R Monoclonal Antibody AVE1642, Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022, Anti-IL-1 alpha Monoclonal Antibody MABp1, Anti-IL-13 Humanized Monoclonal Antibody TNX-650, Anti-IL-15 Monoclonal Antibody AMG 714, Anti-IL-8 Monoclonal Antibody BMS-986253, Anti-IL-8 Monoclonal Antibody HuMax-IL8, Anti-ILDR2 Monoclonal Antibody BAY 1905254, Anti-ILT4 Monoclonal Antibody MK-4830, Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A, Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388, Anti-IRF4 Antisense Oligonucleotide ION251, Anti-KIR Monoclonal Antibody IPH 2101, Anti-KSP/Anti-VEGF siRNAs ALN-VSP02, Anti-LAG-3 Monoclonal Antibody IBI-110, Anti-LAG-3 Monoclonal Antibody INCAGN02385, Anti-LAG-3 Monoclonal Antibody LAG525, Anti-LAG-3 Monoclonal Antibody REGN3767, Anti-LAG-3/PD-L1 Bispecific Antibody FS118, Anti-LAG3 Monoclonal Antibody BI 754111, Anti-LAG3 Monoclonal Antibody MK-4280, Anti-LAG3 Monoclonal Antibody TSR-033, Anti-LAMP1 Antibody-drug Conjugate SAR428926, Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181, Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102, Anti-LGR5 Monoclonal Antibody BNC101, Anti-LIF Monoclonal Antibody MSC-1, Anti-LILRB4 Monoclonal Antibody IO-202, Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A, Anti-Ly6E Antibody-Drug Conjugate RG 7841, Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C, Anti-Melanin Monoclonal Antibody PTI-6D2, Anti-mesothelin Antibody-drug Conjugate BMS-986148, Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100, Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A, Anti-mesothelin/MMAE Antibody-drug Conjugate RC88, Anti-Met Monoclonal Antibody Mixture Sym015, Anti-Met/EGFR Monoclonal Antibody LY3164530, Anti-MMP-9 Monoclonal Antibody GS-5745, Anti-MUC1 Monoclonal Antibody BTH1704, Anti-MUC16/CD3 Bispecific Antibody REGN4018, Anti-MUC16/CD3 BiTE Antibody REGN4018, Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A, Anti-MUC17/CD3 BiTE Antibody AMG 199, Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062, Anti-myostatin Monoclonal Antibody LY2495655, Anti-NaPi2b Antibody-drug Conjugate XMT-1592, Anti-NaPi2b Monoclonal Antibody XMT-1535, Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E, Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A, Anti-nf-P2X7 Antibody Ointment BIL-010t, Anti-NRP1 Antibody ASP1948, Anti-Nucleolin Aptamer AS1411, Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A, Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso, Anti-OFA Immunotherapeutic BB-MPI-03, Anti-OX40 Agonist Monoclonal Antibody ABBV-368, Anti-OX40 Agonist Monoclonal Antibody BGB-A445, Anti-OX40 Agonist Monoclonal Antibody PF-04518600, Anti-OX40 Antibody BMS 986178, Anti-OX40 Hexavalent Agonist Antibody INBRX-106, Anti-OX40 Monoclonal Antibody GSK3174998, Anti-OX40 Monoclonal Antibody IBI101, Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256, Anti-PD-1 Checkpoint Inhibitor PF-06801591, Anti-PD-1 Fusion Protein AMP-224, Anti-PD-1 Monoclonal Antibody 609A, Anti-PD-1 Monoclonal Antibody AK105, Anti-PD-1 Monoclonal Antibody AMG 404, Anti-PD-1 Monoclonal Antibody BAT1306, Anti-PD-1 Monoclonal Antibody BCD-100, Anti-PD-1 Monoclonal Antibody BI 754091, Anti-PD-1 Monoclonal Antibody CS1003, Anti-PD-1 Monoclonal Antibody F520, Anti-PD-1 Monoclonal Antibody GLS-010, Anti-PD-1 Monoclonal Antibody HLX10, Anti-PD-1 Monoclonal Antibody HX008, Anti-PD-1 Monoclonal Antibody JTX-4014, Anti-PD-1 Monoclonal Antibody LZM009, Anti-PD-1 Monoclonal Antibody MEDI0680, Anti-PD-1 Monoclonal Antibody MGA012, Anti-PD-1 Monoclonal Antibody SCT-I10A, Anti-PD-1 Monoclonal Antibody Sym021, Anti-PD-1 Monoclonal Antibody TSR-042, Anti-PD-1/Anti-CTLA4 DART Protein MGD019, Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315, Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669, Anti-PD-1/Anti-LAG-3 DART Protein MGD013, Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318, Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172, Anti-PD-1/CD47 Infusion Protein HX009, Anti-PD-1/CTLA-4 Bispecific Antibody AK104, Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752, Anti-PD-1/TIM-3 Bispecific Antibody RO7121661, Anti-PD-1/VEGF Bispecific Antibody AK112, Anti-PD-L1 Monoclonal Antibody A167, Anti-PD-L1 Monoclonal Antibody BCD-135, Anti-PD-L1 Monoclonal Antibody BGB-A333, Anti-PD-L1 Monoclonal Antibody CBT-502, Anti-PD-L1 Monoclonal Antibody CK-301, Anti-PD-L1 Monoclonal Antibody CS1001, Anti-PD-L1 Monoclonal Antibody FAZ053, Anti-PD-L1 Monoclonal Antibody GR1405, Anti-PD-L1 Monoclonal Antibody HLX20, Anti-PD-L1 Monoclonal Antibody IMC-001, Anti-PD-L1 Monoclonal Antibody LY3300054, Anti-PD-L1 Monoclonal Antibody MDX-1105, Anti-PD-L1 Monoclonal Antibody MSB2311, Anti-PD-L1 Monoclonal Antibody RC98, Anti-PD-L1 Monoclonal Antibody SHR-1316, Anti-PD-L1 Monoclonal Antibody TG-1501, Anti-PD-L1 Monoclonal Antibody ZKAB001, Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105, Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046, Anti-PD-L1/CD137 Bispecific Antibody MCLA-145, Anti-PD-L1/IL-15 Fusion Protein KD033, Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244, Anti-PD1 Monoclonal Antibody AGEN2034, Anti-PD1/CTLA4 Bispecific Antibody XmAb20717, Anti-PGF Monoclonal Antibody RO5323441, Anti-PKN3 siRNA Atu027, Anti-PLGF Monoclonal Antibody TB-403, Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4, Anti-PRAME Immunotherapeutic GSK2302032A, Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C, Anti-PRL-3 Monoclonal Antibody PRL3-zumab, Anti-prolactin Receptor Antibody LFA102, Anti-PSCA Monoclonal Antibody AGS-1C4D4, Anti-PSMA Monoclonal Antibody MDX1201-A488, Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704, Anti-PSMA Monoclonal Antibody-MMAE Conjugate, Anti-PSMA/CD28 Bispecific Antibody REGN5678, Anti-PSMA/CD3 Bispecific Antibody CCW702, Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081, Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414, Anti-PSMA/PBD ADC MEDI3726, Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020, Anti-PVRIG Monoclonal Antibody COM701, Anti-RANKL Monoclonal Antibody GB-223, Anti-RANKL Monoclonal Antibody JMT103, Anti-Ribonucleoprotein Antibody ATRC-101, Anti-ROR1 ADC VLS-101, Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002, Anti-S15 Monoclonal Antibody NC318, Anti-sCLU Monoclonal Antibody AB-16B5, Anti-SIRPa Monoclonal Antibody CC-95251, Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E, Anti-TAG-72 Monoclonal Antibody scFV CC-49/218, Anti-TF Monoclonal Antibody ALT-836, Anti-TGF-beta Monoclonal Antibody NIS793, Anti-TGF-beta Monoclonal Antibody SAR-439459, Anti-TGF-beta RII Monoclonal Antibody IMC-TR1, Anti-TIGIT Monoclonal Antibody AB154, Anti-TIGIT Monoclonal Antibody BGB-A1217, Anti-TIGIT Monoclonal Antibody BMS-986207, Anti-TIGIT Monoclonal Antibody COM902, Anti-TIGIT Monoclonal Antibody OMP-313M32, Anti-TIGIT Monoclonal Antibody SGN-TGT, Anti-TIM-3 Antibody BMS-986258, Anti-TIM-3 Monoclonal Antibody BGB-A425, Anti-TIM-3 Monoclonal Antibody INCAGN02390, Anti-TIM-3 Monoclonal Antibody MBG453, Anti-TIM-3 Monoclonal Antibody Sym023, Anti-TIM-3 Monoclonal Antibody TSR-022, Anti-TIM3 Monoclonal Antibody LY3321367, Anti-TIM3 Monoclonal Antibody SHR-1702, Anti-Tissue Factor Monoclonal Antibody MORAb-066, Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711, Anti-TROP2 Antibody-drug Conjugate BAT8003, Anti-TROP2 Antibody-drug Conjugate SKB264, Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a, Anti-TWEAK Monoclonal Antibody RG7212, Anti-VEGF Anticalin PRS-050-PEG40, Anti-VEGF Monoclonal Antibody hPV19, Anti-VEGF/ANG2 Nanobody BI 836880, Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T, Anti-VEGFC Monoclonal Antibody VGX-100, Anti-VEGFR2 Monoclonal Antibody HLX06, Anti-VEGFR2 Monoclonal Antibody MSB0254, Anti-VEGFR3 Monoclonal Antibody IMC-3C5, Anti-VISTA Monoclonal Antibody JNJ 61610588, Antiangiogenic Drug Combination TL-118, Antibody-drug Conjugate ABBV-011, Antibody-drug Conjugate ABBV-085, Antibody-drug Conjugate ABBV-155, Antibody-drug Conjugate ABBV-176, Antibody-drug Conjugate ABBV-838, Antibody-drug Conjugate ADC XMT-1536, Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014, Antibody-Drug Conjugate DFRF4539A, Antibody-drug Conjugate MEDI7247, Antibody-drug Conjugate PF-06647263, Antibody-drug Conjugate PF-06664178, Antibody-drug Conjugate SC-002, Antibody-drug Conjugate SC-003, Antibody-drug Conjugate SC-004, Antibody-drug Conjugate SC-005, Antibody-drug Conjugate SC-006, Antibody-drug Conjugate SC-007, Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008, Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV, Antimetabolite FF-10502, Antineoplastic Agent Combination SM-88, Antineoplastic Vaccine, Antineoplastic Vaccine GV-1301, Antineoplaston A10, Antineoplaston AS2-1, Antisense Oligonucleotide GTI-2040, Antisense Oligonucleotide QR-313, Antitumor B Key Active Component-alpha, Antrodia cinnamomea Supplement, Antroquinonol Capsule, Apalutamide, Apatorsen, Apaziquone, APC8015F, APE1/Ref-1 Redox Inhibitor APX3330, Aphidicoline Glycinate, Apilimod Dimesylate Capsule, Apitolisib, Apolizumab, Apomab, Apomine, Apoptosis Inducer BZL101, Apoptosis Inducer GCS-100, Apoptosis Inducer MPC-2130, Apricoxib, Aprinocarsen, Aprutumab, Aprutumab Ixadotin, AR Antagonist BMS-641988, Arabinoxylan Compound MGN3, Aranose, ARC Fusion Protein SL-279252, Archexin, Arcitumomab, Arfolitixorin, Arginase Inhibitor INCB001158, Arginine Butyrate, Arnebia Indigo Jade Pearl Topical Cream, Arsenic Trioxide, Arsenic Trioxide Capsule Formulation ORH 2014, Artemether Sublingual Spray, Artemisinin Dimer, Artesunate, Arugula Seed Powder, Aryl Hydrocarbon Receptor Antagonist BAY2416964, Aryl Hydrocarbon Receptor Inhibitor IK-175, Asaley, Asciminib, Ascrinvacumab, Ashwagandha Root Powder Extract, ASP4132, Aspacytarabine, Asparaginase, Asparaginase Erwinia chrysanthemi, Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10, Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10, Astuprotimut-R, Asulacrine, Asulacrine Isethionate, Asunercept, At 211 Monoclonal Antibody 81C6, Atamestane, Atezolizumab, Atiprimod, Atiprimod Dihydrochloride, Atiprimod Dimaleate, ATM Inhibitor M 3541, ATM Kinase Inhibitor AZD0156, ATM Kinase Inhibitor AZD1390, Atorvastatin Calcium, Atorvastatin Sodium, ATR Inhibitor RP-3500, ATR Kinase Inhibitor BAY1895344, ATR Kinase Inhibitor M1774, ATR Kinase Inhibitor M6620, ATR Kinase Inhibitor VX-803, Atrasentan Hydrochloride, Attenuated Listeria monocytogenes CRS-100, Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001, Attenuated Measles Virus Encoding SCD Transgene TMV-018, Atuveciclib, Audencel, Auranofin, Aurora A Kinase Inhibitor LY3295668, Aurora A Kinase Inhibitor LY3295668 Erbumine, Aurora A Kinase Inhibitor MK5108, Aurora A Kinase Inhibitor TAS-119, Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076, Aurora B Serine/Threonine Kinase Inhibitor TAK-901, Aurora B/C Kinase Inhibitor GSK1070916A, Aurora kinase A/B inhibitor TT-00420, Aurora Kinase Inhibitor AMG 900, Aurora Kinase Inhibitor BI 811283, Aurora Kinase Inhibitor MLN8054, Aurora Kinase Inhibitor PF-03814735, Aurora Kinase Inhibitor SNS-314, Aurora Kinase Inhibitor TTP607, Aurora Kinase/VEGFR2 Inhibitor CYC116, Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707, Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055, Autologous Anti-BCMA CAR T-cells PHE885, Autologous Anti-BCMA CAR-transduced T-cells KITE-585, Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11, Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053, Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143, Autologous Anti-CD123 CAR-T Cells, Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx, Autologous Anti-CD19 CAR T-cells IM19, Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19, Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19, Autologous Anti-CD19 CAR-CD28 T-cells ET019002, Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01, Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19, Autologous Anti-CD19 T-cell Receptor T cells ET190L1, Autologous Anti-CD19 TAC-T cells TAC01-CD19, Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells, Autologous Anti-CD19/CD22 CAR T-cells AUTO3, Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014, Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells, Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1, Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s, Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes, Autologous Anti-FLT3 CAR T Cells AMG 553, Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202, Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1, Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100, Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes, Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794, Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes, Autologous Anti-PSMA CAR-T Cells P-PSMA-101, Autologous AXL-targeted CAR T-cells CCT301-38, Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B, Autologous BCMA-targeted CAR T Cells CC-98633, Autologous BCMA-targeted CAR T Cells LCAR-B4822M, Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528, Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F, Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022, Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006, Autologous CD123-4SCAR-expressing T-cells 4SCAR123, Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1, Autologous CD19-targeted CAR T Cells CC-97540, Autologous CD19-targeted CAR T Cells JWCAR029, Autologous CD19-targeted CAR-T Cells GC007F, Autologous CD19/PD-1 Bispecific CAR-T Cells, Autologous CD20-4SCAR-expressing T-cells 4SCAR20, Autologous CD22-4SCAR-expressing T-cells 4SCAR22, Autologous CD38-4SCAR-expressing T-cells 4SCAR38, Autologous Clonal Neoantigen T Cells ATL001, Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19, Autologous Deep IL-15 Primed T-cells TRQ15-01, Autologous Dendritic Cell Vaccine ACT2001, Autologous Dendritic Cell-based Immunotherapeutic AV0113, Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa, Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells, Autologous Genetically-modified MAGE-A4 C1032 T Cells, Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858, Autologous HPV16 E7-specific HLA-A*02:01-restricted TCR Gene Engineered Lymphocytes KITE-439, Autologous LMP1/LMP2/EBNA1-specific HLA-A02:01/24:02/11:01-restricted TCR-expressing T-lymphocytes YT-E001, Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718, Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR, Autologous Mesenchymal Stem Cells Apceth_101, Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11, Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC, Autologous Multi-lineage Potential Cells, Autologous Nectin-4/FAP-targeted CAR-T Cells, Autologous NKG2D CAR T-cells CYAD-02, Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01, Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine, Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001, Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101, Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601, Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201, Autologous ROR2-targeted CAR T-cells CCT301-59, Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1, Autologous TCR-engineered T-cells IMA201, Autologous TCR-engineered T-cells IMA202, Autologous TCR-engineered T-cells IMA203, Autologous TCRm-expressing T-cells ET140203, Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG, Autologous Tumor Infiltrating Lymphocytes LN-144, Autologous Tumor Infiltrating Lymphocytes LN-145, Autologous Tumor Infiltrating Lymphocytes LN-145-S1, Autologous Tumor Infiltrating Lymphocytes MDA-TIL, Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T, Avadomide, Avadomide Hydrochloride, Avapritinib, Avdoralimab, Avelumab, Aviscumine, Avitinib Maleate, Axalimogene Filolisbac, Axatilimab, Axicabtagene Ciloleucel, Axitinib, AXL Inhibitor DS-1205c, AXL Inhibitor SLC-391, AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M, AXL/ FLT3/VEGFR2 Inhibitor KC1036, Axl/Mer Inhibitor INCB081776, Axl/Mer Inhibitor PF-07265807, Azacitidine, Azapicyl, Azaribine, Azaserine, Azathioprine, Azimexon, Azintuxizumab Vedotin, Aziridinylbenzoquinone RH1, Azotomycin, Azurin:50-77 Cell Penetrating Peptide p28, B-Raf/VEGFR-2 Inhibitor RAF265, Babaodan Capsule, Bacillus Calmette-Guerin Substrain Connaught Live Antigen, Bactobolin, Bafetinib, Balixafortide, Balstilimab, Baltaleucel-T, Banoxantrone, Barasertib, Bardoxolone, Bardoxolone Methyl, Baricitinib, Batabulin, Batabulin Sodium, Batimastat, Bavituximab, Bazedoxifene, Bazlitoran, BC-819 Plasmid/Polyethylenimine Complex, BCG Solution, BCG Tokyo-172 Strain Solution, BCG Vaccine, Bcl-2 Inhibitor APG 2575, Bcl-2 Inhibitor BCL201, Bcl-2 Inhibitor BGB-11417, Bcl-2 Inhibitor LP-108, Bcl-2 Inhibitor S65487, Bcl-Xs Adenovirus Vaccine, BCMA x CD3 T-cell Engaging Antibody CC-93269, BCMA-CD19 Compound CAR T Cells, BCMA/CD3e Tri-specific T-cell Activating Construct HPN217, Bcr-Abl Kinase Inhibitor K0706, Bcr-Abl Kinase Inhibitor PF-114, BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351, Beauvericin, Becatecarin, Belagenpumatucel-L, Belantamab Mafodotin, Belapectin, Belimumab, Belinostat, Belotecan Hydrochloride, Belvarafenib, Belzutifan, Bemarituzumab, Bemcentinib, Bempegaldesleukin, Benaxibine, Bendamustine, Bendamustine Hydrochloride, Bendamustine-containing Nanoparticle-based Formulation RXDX-107, Benzaldehyde Dimethane Sulfonate, Benzoylphenylurea, Berberine Chloride, Bermekimab, Bersanlimab, Berubicin Hydrochloride, Berzosertib, BET Bromodomain Inhibitor ZEN-3694, BET Inhibitor ABBV-744, BET Inhibitor BAY1238097, BET inhibitor BI 894999, BET Inhibitor BMS-986158, BET Inhibitor CC-90010, BET Inhibitor CPI-0610, BET Inhibitor FT-1101, BET Inhibitor GS-5829, BET Inhibitor GSK2820151, BET Inhibitor INCB054329, BET Inhibitor INCB057643, BET Inhibitor RO6870810, BET-bromodomain Inhibitor ODM-207, Beta Alethine, Beta-Carotene, Beta-elemene, Beta-Glucan, Beta-Glucan MM-10-001, Beta-lapachone Prodrug ARQ 761, Beta-Thioguanine Deoxyriboside, Betaglucin Gel, Betulinic Acid, Bevacizumab, Bexarotene, Bexmarilimab, BF-200 Gel Formulation, BH3 Mimetic ABT-737, Bi-functional Alkylating Agent VAL-083, Bicalutamide, Bimiralisib, Binetrakin, Binimetinib, Bintrafusp Alfa, Birabresib, Birinapant, Bis(choline)tetrathiomolybdate, Bisantrene, Bisantrene Hydrochloride, Bisnafide, Bisnafide Dimesylate, Bispecific Antibody 2B1, Bispecific Antibody AGEN1223, Bispecific Antibody AMG 509, Bispecific Antibody GS-1423, Bispecific Antibody MDX-H210, Bispecific Antibody MDX447, Bisthianostat, BiTE Antibody AMG 910, Bivalent BRD4 Inhibitor AZD5153, Bizalimogene Ralaplasmid, Bizelesin, BL22 Immunotoxin, Black Cohosh, Black Raspberry Nectar, Bleomycin, Bleomycin A2, Bleomycin B2, Bleomycin Sulfate, Blinatumomab, Blueberry Powder Supplement, BMI1 Inhibitor PTC596, BMS-184476, BMS-188797, BMS-214662, BMS-275183, Boanmycin Hydrochloride, Bomedemstat, Boronophenylalanine-Fructose Complex, Bortezomib, Bosutinib, Bosutinib Monohydrate, Botanical Agent BEL-X-HG, Botanical Agent LEAC-102, Bovine Cartilage, Bozitinib, BP-Cx1-Platinum Complex BP-C1, BR96-Doxorubicin Immunoconjugate, Brachyury-expressing Yeast Vaccine GI-6301, BRAF Inhibitor, BRAF Inhibitor ARQ 736, BRAF Inhibitor BGB-3245, BRAF Inhibitor PLX8394, BRAF(V600E) Kinase Inhibitor ABM-1310, BRAF(V600E) Kinase Inhibitor RO5212054, BRAF/EGFR Inhibitor BGB-283, BRAFV600/PI3K Inhibitor ASN003, BRD4 Inhibitor PLX2853, BRD4 Inhibitor PLX51107, Breflate, Brentuximab, Brentuximab Vedotin, Brequinar, Brequinar Sodium, Briciclib Sodium, Brigatinib, Brilanestrant, Brimonidine Tartrate Nanoemulsion OCU-300, Brivanib, Brivanib Alaninate, Brivudine, Brivudine Phosphoramidate, Broad-Spectrum Human Papillomavirus Vaccine V505, Broccoli Sprout/Broccoli Seed Extract Supplement, Bromacrylide, Bromebric Acid, Bromocriptine Mesylate, Brontictuzumab, Brostacillin Hydrochloride, Brostallicin, Broxuridine, Bruceanol A, Bruceanol B, Bruceanol C, Bruceanol D, Bruceanol E, Bruceanol F, Bruceanol G, Bruceanol H, Bruceantin, Bryostatin 1, BTK Inhibitor ARQ 531, BTK Inhibitor CT-1530, BTK Inhibitor DTRMWXHS-12, BTK Inhibitor HZ-A-018, BTK Inhibitor ICP-022, BTK Inhibitor LOXO-305, BTK Inhibitor M7583, BTK inhibitor TG-1701, Budigalimab, Budotitane, Bufalin, Buparlisib, Burixafor, Burixafor Hydrobromide, Burosumab, Buserelin, Bushen Culuan Decoction, Bushen-Jianpi Decoction, Busulfan, Buthionine Sulfoximine, BXQ-350 Nanovesicle Formulation, c-Kit Inhibitor PLX9486, c-Met Inhibitor ABN401, c-Met Inhibitor AL2846, c-Met Inhibitor AMG 208, c-Met Inhibitor AMG 337, c-Met Inhibitor GST-HG161, c-Met Inhibitor HS-10241, c-Met Inhibitor JNJ-38877605, c-Met Inhibitor MK2461, c-Met Inhibitor MK8033, c-Met Inhibitor MSC2156119J, C-myb Antisense Oligonucleotide G4460, c-raf Antisense Oligonucleotide ISIS 5132, C-VISA BikDD:Liposome, C/EBP Beta Antagonist ST101, CAB-ROR2-ADC BA3021, Cabazitaxel, Cabiralizumab, Cabozantinib, Cabozantinib S-malate, Cactinomycin, Caffeic Acid Phenethyl Ester, CAIX Inhibitor DTP348, CAIX Inhibitor SLC-0111, Calaspargase Pegol-mknl, Calcitriol, Calcium Release-activated Channel Inhibitor CM4620, Calcium Release-activated Channels Inhibitor RP4010, Calcium Saccharate, Calculus bovis/Moschus/Olibanum/Myrrha Capsule, Calicheamicin Gamma 1I, Camidanlumab Tesirine, Camptothecin, Camptothecin Analogue TLC388, Camptothecin Glycoconjugate BAY 38-3441, Camptothecin Sodium, Camptothecin-20(S)-O-Propionate Hydrate, Camrelizumab, Camsirubicin, Cancell, Cancer Peptide Vaccine S-588410, Canerpaturev, Canertinib Dihydrochloride, Canfosfamide, Canfosfamide Hydrochloride, Cannabidiol, Cantrixil, Cantuzumab Ravtansine, Capecitabine, Capecitabine Rapidly Disintegrating Tablet, Capivasertib, Capmatinib, Captopril, CAR T-Cells AMG 119, Caracemide, Carbendazim, Carbetimer, Carbogen, Carbon C 14-pamiparib, Carboplatin, Carboquone, Carboxyamidotriazole, Carboxyamidotriazole Orotate, Carboxyphenyl Retinamide, Carfilzomib, Caricotamide/Tretazicar, Carlumab, Carmofur, Carmustine, Carmustine Implant, Carmustine in Ethanol, Carmustine Sustained-Release Implant Wafer, Carotuximab, Carubicin, Carubicin Hydrochloride, Carzelesin, Carzinophilin, Cathelicidin LL-37, Cationic Liposome-Encapsulated Paclitaxel, Cationic Peptide Cream Cypep-1, Catumaxomab, CBP/beta-catenin Antagonist PRI-724, CBP/beta-catenin Modulator E7386, CCR2 Antagonist CCX872-B, CCR2 Antagonist PF-04136309, CCR2/CCR5 Antagonist BMS-813160, CCR4 Inhibitor FLX475, CD11b Agonist GB1275, CD123-CD33 Compound CAR T Cells, CD123-specific Targeting Module TM123, CD20-CD19 Compound CAR T Cells, CD28/ICOS Antagonist ALPN-101, CD4-specific Telomerase Peptide Vaccine UCPVax, CD40 Agonist Monoclonal Antibody CP-870;893, CD40 Agonistic Monoclonal Antibody APX005M, CD44 Targeted Agent SPL-108, CD44v6-specific CAR T-cells, CD47 Antagonist ALX148, CD73 Inhibitor AB680, CD73 Inhibitor LY3475070, CD80-Fc Fusion Protein ALPN-202, CD80-Fc Fusion Protein FPT155, CDC7 Inhibitor TAK-931, CDC7 Kinase Inhibitor BMS-863233, CDC7 Kinase Inhibitor LY3143921 Hydrate, CDC7 Kinase Inhibitor NMS-1116354, CDK Inhibitor AT7519, CDK Inhibitor R547, CDK Inhibitor SNS-032, CDK/JAK2/FLT3 Inhibitor TG02 Citrate, CDK1 Inhibitor BEY1107, CDK1/2/4 Inhibitor AG-024322, CDK2 Inhibitor PF-07104091, CDK2/4/6/FLT3 Inhibitor FN-1501, CDK2/5/9 Inhibitor CYC065, CDK4 Inhibitor P1446A-05, CDK4/6 Inhibitor, CDK4/6 Inhibitor BPI-16350, CDK4/6 Inhibitor CS3002, CDK4/6 Inhibitor FCN-437, CDK4/6 Inhibitor G1T38, CDK4/6 Inhibitor HS-10342, CDK4/6 Inhibitor SHR6390, CDK4/6 Inhibitor TQB3616, CDK7 Inhibitor CT7001, CDK7 Inhibitor SY-1365, CDK7 Inhibitor SY-5609, CDK8/19 Inhibitor SEL 120, CDK9 Inhibitor AZD4573, CEA-MUC-1-TRICOM Vaccine CV301, CEA-targeting Agent RG6123, CEBPA-targeting saRNA MTL-CEBPA Liposome, Cedazuridine, Cedazuridine/Azacitidine Combination Agent ASTX030, Cedazuridine/Decitabine Combination Agent ASTX727, Cedefingol, Cediranib, Cediranib Maleate, Celecoxib, Cell Cycle Checkpoint/DNA Repair Antagonist IC83, Cemadotin, Cemadotin Hydrochloride, Cemiplimab, Cenersen, Cenisertib, CENP-E Inhibitor GSK-923295, Ceralasertib, Ceramide Nanoliposome, Cerdulatinib, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282, Cereblon Modulator CC-90009, Cergutuzumab Amunaleukin, Ceritinib, Cesalin, cEt KRAS Antisense Oligonucleotide AZD4785, Cetrelimab, Cetuximab, Cetuximab Sarotalocan, Cetuximab-IR700 Conjugate RM-1929, Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY), Cevipabulin, Cevipabulin Fumarate, Cevipabulin Succinate, Cevostamab, cFMS Tyrosine Kinase Inhibitor ARRY-382, Chaparrin, Chaparrinone, Checkpoint Kinase Inhibitor AZD7762, Checkpoint Kinase Inhibitor XL844, Chemotherapy, Chiauranib, Chimeric Monoclonal Antibody 81C6, ChiNing Decoction, Chk1 Inhibitor CCT245737, Chk1 Inhibitor GDC-0425, Chk1 Inhibitor GDC-0575, CHK1 Inhibitor MK-8776, CHK1 Inhibitor PF-477736, Chlorambucil, Chlorodihydropyrimidine, Chloroquine, Chloroquinoxaline Sulfonamide, Chlorotoxin, Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes, Chlorozotocin, Choline Kinase Alpha Inhibitor TCD-717, CHP-NY-ESO-1 Peptide Vaccine IMF-001, Chromomycin A3, Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement, Cibisatamab, Ciclopirox Prodrug CPX-POM, Cidan Herbal Capsule, Ciforadenant, Cilengitide, Ciltacabtagene Autoleucel, Cimetidine, Cinacalcet Hydrochloride, Cinobufagin, Cinobufotalin, Cinrebafusp Alfa, Cintirorgon, Cintredekin Besudotox, Cirmtuzumab, cis-Urocanic Acid, Cisplatin, Cisplatin Liposomal, Cisplatin-E Therapeutic Implant, Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6, Citarinostat, Citatuzumab Bogatox, Cixutumumab, CK1alpha/CDK7/CDK9 Inhibitor BTX-A51, CK2-targeting Synthetic Peptide CIGB-300, CL 246738, Cladribine, Clanfenur, Clarithromycin, Class 1/4 Histone Deacetylase Inhibitor OKI-179, Clinical Trial, Clinical Trial Agent, Clioquinol, Clivatuzumab, Clodronate Disodium, Clodronic Acid, Clofarabine, Clomesone, Clomiphene, Clomiphene Citrate, Clostridium Novyi-NT Spores, Cobimetinib, Cobolimab, Cobomarsen, Codrituzumab, Coenzyme Q10, Cofetuzumab Pelidotin, Colchicine-Site Binding Agent ABT-751, Cold Contaminant-free Iobenguane I-131, Colloidal Gold-Bound Tumor Necrosis Factor, Colorectal Cancer Peptide Vaccine PolyPEPI1018, Colorectal Tumor-Associated Peptides Vaccine IMA910, Coltuximab Ravtansine, Combretastatin, Combretastatin A-1, Combretastatin A1 Diphosphate, Commensal Bacterial Strain Formulation VE800, Compound Kushen Injection, Conatumumab, Conbercept, Concentrated Lingzhi Mushroom Extract, Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011, Copanlisib, Copanlisib Hydrochloride, Copper Cu 64-ATSM, Copper Cu 67 Tyr3-octreotate, Copper Gluconate, Cord Blood Derived CAR T-Cells, Cord Blood-derived Expanded Natural Killer Cells PNK-007, Cordycepin, Cordycepin Triphosphate, Coriolus Versicolor Extract, Corticorelin Acetate, Cortisone Acetate, Cosibelimab, Cositecan, Coxsackievirus A21, Coxsackievirus V937, CpG Oligodeoxynucleotide GNKG168, Crenolanib, Crenolanib Besylate, Crizotinib, Crolibulin, Cryptophycin, Cryptophycin 52, Crystalline Genistein Formulation AXP107-11, CSF-1R Inhibitor BLZ945, CSF1R Inhibitor ABSK021, CSF1R Inhibitor DCC-3014, CSF1R Inhibitor PLX73086, CT2584 HMS, CTLA-4-directed Probody BMS-986249, Curcumin, Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110, Cusatuzumab, Custirsen Sodium, CXC Chemokine Receptor 2 Antagonist AZD5069, CXCR1/2 Inhibitor SX-682, CXCR2 Antagonist QBM076, CXCR4 Antagonist BL-8040, CXCR4 Antagonist USL311, CXCR4 Inhibitor Q-122, CXCR4 Peptide Antagonist LY2510924, CXCR4/E-selectin Antagonist GMI-1359, Cyclin-dependent Kinase 8/19 Inhibitor BCD 115, Cyclin-dependent Kinase Inhibitor PF-06873600, Cyclodextrin-Based Polymer-Camptothecin CRLX101, Cyclodisone, Cycloleucine, Cyclopentenyl Cytosine, Cyclophosphamide, Cyclophosphamide Anhydrous, Cyclosporine, CYL-02 Plasmid DNA, CYP11A1 inhibitor ODM-208, CYP11A1 Inhibitor ODM-209, CYP17 Inhibitor CFG920, CYP17 Lyase Inhibitor ASN001, CYP17/Androgen Receptor Inhibitor ODM 204, CYP17/CYP11B2 Inhibitor LAE001, Cyproterone, Cyproterone Acetate, Cytarabine, Cytarabine Monophosphate Prodrug MB07133, Cytarabine-asparagine Prodrug BST-236, Cytidine Analog RX-3117, Cytochlor, Cytokine-based Biologic Agent IRX-2, D-methionine Formulation MRX-1024, DAB389 Epidermal Growth Factor, Dabrafenib, Dabrafenib Mesylate, Dacarbazine, Dacetuzumab, DACH Polymer Platinate AP5346, DACH-Platin Micelle NC-4016, Daclizumab, Dacomitinib, Dacplatinum, Dactinomycin, Dactolisib, Dactolisib Tosylate, Dalantercept, Dalotuzumab, Daniquidone, Danusertib, Danvatirsen, Daporinad, Daratumumab, Daratumumab and Hyaluronidase-fihj, Daratumumab/rHuPH20, Darinaparsin, Darleukin, Darolutamide, Daromun, Dasatinib, Daunorubicin, Daunorubicin Citrate, Daunorubicin Hydrochloride, DEC-205/NY-ESO-1 Fusion Protein CDX-1401, Decitabine, Decitabine and Cedazuridine, Defactinib, Defactinib Hydrochloride, Deferoxamine, Deferoxamine Mesylate, Degarelix, Degarelix Acetate, Delanzomib, Delolimogene Mupadenorepvec, Demcizumab, Demecolcine, Demplatin Pegraglumer, Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466, Dendritic Cell Vaccine, Dendritic Cell-Autologous Lung Tumor Vaccine, Dendritic Cell-targeting Lentiviral Vector ID-LV305, Denenicokin, Dengue Virus Adjuvant PV-001-DV, Denibulin, Denibulin Hydrochloride, Denileukin Diftitox, Denintuzumab Mafodotin, Denosumab, Deoxycytidine Analogue TAS-109, Deoxycytidine Analogue TAS-109 Hydrochloride, Depatuxizumab, Depatuxizumab Mafodotin, Derazantinib, Deslorelin, Deslorelin Acetate, Detirelix, Detorubicin, Deuteporfin, Deuterated Enzalutamide, Devimistat, Dexamethason, Dexamethasone, Dexamethasone Phosphate, Dexamethasone Sodium Phosphate, Dexanabinol, Dexrazoxane, Dexrazoxane Hydrochloride, Dezaguanine, Dezaguanine Mesylate, Dezapelisib, DHA-Paclitaxel, DHEA Mustard, DI-Leu16-IL2 Immunocytokine, Dianhydrogalactitol, Diarylsulfonylurea Compound ILX-295501, Diazepinomicin, Diaziquone, Diazooxonorleucine, Dibrospidium Chloride, Dichloroallyl Lawsone, Dicycloplatin, Didox, Dienogest, Diethylnorspermine, Digitoxin, Digoxin, Dihydro-5-Azacytidine, Dihydrolenperone, Dihydroorotate Dehydrogenase Inhibitor AG-636, Dihydroorotate Dehydrogenase Inhibitor BAY2402234, Diindolylmethane, Dilpacimab, Dimethylmyleran, Dinaciclib, Dinutuximab, Dioscorea nipponica Makino Extract DNE3, Diphencyprone, Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777, Ditiocarb, DKK1-Neutralizing Monoclonal Antibody DKN-01, DM-CHOC-PEN, DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015, DNA Interference Oligonucleotide PNT2258, DNA Minor Groove Binding Agent SG2000, DNA Plasmid Encoding Interleukin-12 INO-9012, DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151, DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457, DNA Vaccine VB10.16, DNA-dependent Protein Kinase Inhibitor VX-984, DNA-PK inhibitor AZD7648, DNA-PK/PI3K-delta Inhibitor BR101801, DNA-PK/TOR Kinase Inhibitor CC-115, DNMT1 Inhibitor NTX-301, DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98, Docetaxel, Docetaxel Anhydrous, Docetaxel Emulsion ANX-514, Docetaxel Formulation CKD-810, Docetaxel Lipid Microspheres, Docetaxel Nanoparticle CPC634, Docetaxel Polymeric Micelles, Docetaxel-loaded Nanopharmaceutical CRLX301, Docetaxel-PNP, Docetaxel/Ritonavir, Dociparstat sodium, Dolastatin 10, Dolastatin 15, Domatinostat, Donafenib, Dopamine-Somatostatin Chimeric Molecule BIM-23A760, Dostarlimab, Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703, Dovitinib, Dovitinib Lactate, Doxazosin, Doxercalciferol, Doxifluridine, Doxorubicin, Doxorubicin Hydrochloride, Doxorubicin Prodrug L-377;202, Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370, Doxorubicin-Eluting Beads, Doxorubicin-HPMA Conjugate, Doxorubicin-loaded EGFR-targeting Nanocells, Doxorubicin-Magnetic Targeted Carrier Complex, DPT/BCG/Measles/Serratia/Pneumococcus Vaccine, DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine, DPX-E7 HPV Vaccine, DR5 HexaBody Agonist GEN1029, DR5-targeting Tetrameric Nanobody Agonist TAS266, Dromostanolone Propionate, Drozitumab, DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555, Dual IGF-1R/InsR Inhibitor BMS-754807, Dual Variable Domain Immunoglobulin ABT-165, Dual-affinity B7-H3/CD3-targeted Protein MGD009, Dubermatinib, Duborimycin, Dulanermin, Duligotuzumab, Dupilumab, Durvalumab, Dusigitumab, dUTPase/DPD Inhibitor TAS-114, Duvelisib, Duvortuxizumab, Dynemicin, Dynemicin A, E2F1 Pathway Activator ARQ 171, EBNA-1 inhibitor VK-2019, Echinomycin, Ecromeximab, Edatrexate, Edelfosine, Edicotinib, Edodekin alfa, Edotecarin, Edrecolomab, EED Inhibitor MAK683, Efatutazone, Efatutazone Dihydrochloride, Efizonerimod, Eflornithine, Eflornithine Hydrochloride, Eftilagimod Alpha, Eftozanermin Alfa, Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205, Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621, EGb761, EGFR Antagonist Hemay022, EGFR Antisense DNA BB-401, EGFR Inhibitor AZD3759, EGFR Inhibitor BIBX 1382, EGFR Inhibitor DBPR112, EGFR Inhibitor PD-168393, EGFR Inhibitor TY-9591, EGFR Mutant-selective Inhibitor TQB3804, EGFR Mutant-specific Inhibitor BPI-7711, EGFR Mutant-specific Inhibitor CK-101, EGFR Mutant-specific Inhibitor D-0316, EGFR Mutant-specific Inhibitor ZN-e4, EGFR T790M Antagonist BPI-15086, EGFR T790M Inhibitor HS-10296, EGFR/EGFRvIII Inhibitor WSD0922-FU, EGFR/FLT3/Abl Inhibitor SKLB1028, EGFR/HER1/HER2 Inhibitor PKI166, EGFR/HER2 Inhibitor AP32788, EGFR/HER2 Inhibitor AV-412, EGFR/HER2 Inhibitor DZD9008, EGFR/HER2 Kinase Inhibitor TAK-285, EGFR/TGFb Fusion Monoclonal Antibody BCA101, EGFR/VEGFR/RET Inhibitor HA121-28, Eicosapentaenoic Acid, eIF4E Antisense Oligonucleotide ISIS 183750, Elacestrant, Elacytarabine, Elagolix, Elbasvir/Grazoprevir, Elesclomol, Elesclomol Sodium, Elgemtumab, Elinafide, Elisidepsin, Elliptinium, Elliptinium Acetate, Elmustine, Elotuzumab, Elpamotide, Elsamitrucin, Eltanexor, Emactuzumab, Emapalumab, Emepepimut-S, Emibetuzumab, Emitefur, Emofolin Sodium, Empesertib, Enadenotucirev, Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A, Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641, Enasidenib, Enasidenib Mesylate, Enavatuzumab, Encapsulated Rapamycin, Encelimab, Enclomiphene, Enclomiphene Citrate, Encorafenib, Endothelin B Receptor Blocker ENB 003, Endothelin Receptor Type A Antagonist YM598, Enfortumab Vedotin, Engineered Human Umbilical Vein Endothelial Cells AB-205, Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240, Engineered Toxin Body Targeting CD38 TAK-169, Engineered Toxin Body Targeting HER2 MT-5111, Eniluracil/5-FU Combination Tablet, Enloplatin, Enoblituzumab, Enobosarm, Enoticumab, Enpromate, Ensartinib, Ensituximab, Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride, Enterococcus gallinarum Strain MRx0518, Entinostat, Entolimod, Entospletinib, Entrectinib, Envafolimab, Enzalutamide, Enzastaurin, Enzastaurin Hydrochloride, EP2/EP4 Antagonist TPST-1495, EP4 Antagonist INV-1120, EP4 Antagonist ONO-4578, Epacadostat, Epcoritamab, EphA2-targeting Bicycle Toxin Conjugate BT5528, Epipodophyllotoxin Analog GL331, Epipropidine, Epirubicin, Epirubicin Hydrochloride, Epitinib Succinate, Epitiostanol, Epothilone Analog UTD1, Epothilone KOS-1584, Epratuzumab, Epratuzumab-cys-tesirine, ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471, ERa36 Modulator Icaritin, Erastin Analogue PRLX 93936, Erbulozole, Erdafitinib, Eribulin, Eribulin Mesylate, ERK 1/2 Inhibitor ASTX029, ERK Inhibitor CC-90003, ERK Inhibitor GDC-0994, ERK Inhibitor LTT462, ERK Inhibitor MK-8353, ERK1/2 Inhibitor ASN007, ERK1/2 Inhibitor HH2710, ERK1/2 Inhibitor JSI-1187, ERK1/2 Inhibitor KO-947, ERK1/2 Inhibitor LY3214996, Erlotinib, Erlotinib Hydrochloride, Ertumaxomab, Erythrocyte-encapsulated L-asparaginase Suspension, Esorubicin, Esorubicin Hydrochloride, Esperamicin A1, Essiac, Esterified Estrogens, Estradiol Valerate, Estramustine, Estramustine Phosphate Sodium, Estrogen Receptor Agonist GTx-758, Estrogens; Conjugated, Etalocib, Etanercept, Etanidazole, Etaracizumab, Etarotene, Ethaselen, Ethinyl Estradiol, Ethyleneimine, Ethylnitrosourea, Etidronate-Cytarabine Conjugate MBC-11, Etigilimab, Etirinotecan Pegol, Etoglucid, Etoposide, Etoposide Phosphate, Etoposide Toniribate, Etoprine, Etoricoxib, Ets-family Transcription Factor Inhibitor TK216, Everolimus, Everolimus Tablets for Oral Suspension, Evofosfamide, Ex Vivo-expanded Autologous T Cells IMA101, Exatecan Mesylate, Exatecan Mesylate Anhydrous, Exemestane, Exicorilant, Exisulind, Extended Release Flucytosine, Extended Release Metformin Hydrochloride, Extended-release Onapristone, Ezabenlimab, EZH1/2 Inhibitor DS-3201, EZH1/2 Inhibitor HH2853, EZH2 inhibitor CPI-0209, EZH2 Inhibitor CPI-1205, EZH2 Inhibitor PF-06821497, EZH2 Inhibitor SHR2554, F16-IL2 Fusion Protein, FACT Complex-targeting Curaxin CBL0137, Factor VII-targeting Immunoconjugate Protein ICON-1, Factor VIIa Inhibitor PCI-27483, Fadraciclib, Fadrozole Hydrochloride, FAK Inhibitor GSK2256098, FAK Inhibitor PF-00562271, FAK Inhibitor VS-4718, FAK/ALK/ROS1 Inhibitor APG-2449, Falimarev, Famitinib, FAP/4-1BB-targeting DARPin MP0310, FAP/4-1BB-targeting Fusion Protein RO7122290, Farletuzumab, Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123, Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells, Fas Receptor Agonist APO010, Fascin Inhibitor NP-G2-044, FASN Inhibitor TVB-2640, Favezelimab, Fazarabine, Fc-engineered Anti-CD40 Agonist Antibody 2141-V11, Febuxostat, Fedratinib, Fedratinib Hydrochloride, Feladilimab, Felzartamab, Fenebrutinib, Fenretinide, Fenretinide Lipid Matrix, Fenretinide Phospholipid Suspension ST-001, FGF Receptor Antagonist HGS1036, FGF/FGFR Pathway Inhibitor E7090, FGFR Inhibitor ASP5878, FGFR Inhibitor AZD4547, FGFR Inhibitor CPL304110, FGFR Inhibitor Debio 1347, FGFR Inhibitor TAS-120, FGFR/CSF-1R Inhibitor 3D185, FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999, FGFR1/2/3 Inhibitor HMPL-453, FGFR2 Inhibitor RLY-4008, FGFR4 Antagonist INCB062079, FGFR4 Inhibitor BLU 9931, FGFR4 Inhibitor FGF401, FGFR4 Inhibitor H3B-6527, FGFR4 Inhibitor ICP-105, Fianlimab, Fibromun, Ficlatuzumab, Figitumumab, Filanesib, Filgotinib, Filgrastim, Fimaporfin A, Fimepinostat, Firtecan Pegol, Fisogatinib, Flanvotumab, Flotetuzumab, Floxuridine, FLT3 Inhibitor FF-10101 Succinate, FLT3 Inhibitor HM43239, FLT3 Inhibitor SKI-G-801, Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01, FLT3 Tyrosine Kinase Inhibitor TTT-3002, FLT3/ABL/Aurora Kinase Inhibitor KW-2449, FLT3/CDK4/6 Inhibitor FLX925, FLT3/FGFR Dual Kinase Inhibitor MAX-40279, FLT3/KIT Kinase Inhibitor AKN-028, FLT3/KIT/CSF1R Inhibitor NMS-03592088, Flt3/MerTK Inhibitor MRX-2843, Fludarabine, Fludarabine Phosphate, Flumatinib, Flumatinib Mesylate, Fluorine F 18 Ara-G, Fluorodopan, Fluorouracil, Fluorouracil Implant, Fluorouracil-E Therapeutic Implant, Fluoxymesterone, Flutamide, Fluvastatin, Fluvastatin Sodium, Fluzoparib, FMS Inhibitor JNJ-40346527, Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate, Folate Receptor Targeted Epothilone BMS753493, Folate Receptor-Targeted Tubulysin Conjugate EC1456, Folate Receptor-Targeted Vinca Alkaloid EC0489, Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225, Folate-FITC, Folic Acid, Folitixorin, Foretinib, Foritinib Succinate, Formestane, Forodesine Hydrochloride, Fosaprepitant, Fosbretabulin, Fosbretabulin Disodium, Fosbretabulin Tromethamine, Fosgemcitabine Palabenamide, Fosifloxuridine Nafalbenamide, Foslinanib, Foslinanib Disodium, Fosquidone, Fostriecin, Fotemustine, Fotretamine, FPV Vaccine CV301, FPV-Brachyury-TRICOM Vaccine, Fresolimumab, Fruquintinib, Fulvestrant, Fumagillin-Derived Polymer Conjugate XMT-1107, Fursultiamine, Futibatinib, Futuximab, Futuximab/Modotuximab Mixture, G Protein-coupled Estrogen Receptor Agonist LNS8801, G-Quadruplex Stabilizer BMVC, Galamustine, Galarubicin, Galectin Inhibitor GR-MD-02, Galectin-1 Inhibitor OTX008, Galeterone, Galiximab, Gallium-based Bone Resorption Inhibitor AP-002, Galocitabine, Galunisertib, Gamboge Resin Extract TSB-9-W1, Gamma-delta Tocotrienol, Gamma-Secretase Inhibitor LY3039478, Gamma-Secretase Inhibitor RO4929097, Gandotinib, Ganetespib, Ganglioside GD2, Ganglioside GM2, Ganitumab, Ganoderma lucidum Spores Powder Capsule, Garlic, Gastrin Immunotoxin, Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360, Gataparsen Sodium, Gatipotuzumab, GBM Antigens and Alloantigens Immunotherapeutic Vaccine, Gedatolisib, Gefitinib, Geldanamycin, Gelonin, Gemcitabine, Gemcitabine Elaidate, Gemcitabine Hydrochloride, Gemcitabine Hydrochloride Emulsion, Gemcitabine Prodrug LY2334737, Gemcitabine-Phosphoramidate Hydrochloride NUC-1031, Gemcitabine-Releasing Intravesical System, Gemtuzumab Ozogamicin, Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum, Genistein, Gentuximab, Geranylgeranyltransferase I Inhibitor, GI-4000 Vaccine, Giloralimab, Gilteritinib, Gilteritinib Fumarate, Gimatecan, Gimeracil, Ginsenoside Rg3 Capsule, Giredestrant, Girentuximab, Girodazole, GITR Agonist MEDI1873, Givinostat, Glasdegib, Glasdegib Maleate, Glaucarubolone, Glecaprevir/Pibrentasvir, Glembatumumab Vedotin, Glesatinib, Glioblastoma Cancer Vaccine ERC1671, Glioblastoma Multiforme Multipeptide Vaccine IMA950, Glioma Lysate Vaccine GBM6-AD, Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701, Globo H-DT Vaccine OBI-833, Glofitamab, Glucarpidase, Glucocorticoid Receptor Antagonist ORIC-101, Glufosfamide, Glumetinib, Glutaminase Inhibitor CB-839, Glutaminase Inhibitor CB-839 Hydrochloride, Glutaminase Inhibitor IPN60090, Glutamine Antagonist DRP-104, Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101, Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01, Glycooptimized Trastuzumab-GEX, GM-CSF-encoding Oncolytic Adenovirus CGTG-102, Gold Sodium Thiomalate, Golnerminogene Pradenovec, Golotimod, Golvatinib, Gonadotropin-releasing Hormone Analog, Goserelin, Goserelin Acetate, Goserelin Acetate Extended-release Microspheres LY01005, Gossypol, Gossypol Acetic Acid, Grapiprant, Green Tea Extract-based Antioxidant Supplement, GS/pan-Notch Inhibitor AL101, GS/pan-Notch Inhibitor BMS-986115, GSK-3 Inhibitor 9-ING-41, GSK-3 Inhibitor LY2090314, Guadecitabine, Guanabenz Acetate, Guselkumab, Gusperimus Trihydrochloride, Gutolactone, H-ras Antisense Oligodeoxynucleotide ISIS 2503, H1299 Tumor Cell Lysate Vaccine, HAAH Lambda phage Vaccine SNS-301, Hafnium Oxide-containing Nanoparticles NBTXR3, Halichondrin Analogue E7130, Halichondrin B, Halofuginone, Halofuginone Hydrobromide, HCV DNA Vaccine INO-8000, HDAC Class I/IIb Inhibitor HG146, HDAC Inhibitor AR-42, HDAC inhibitor CG200745, HDAC Inhibitor CHR-2845, HDAC Inhibitor CKD-581, HDAC Inhibitor CXD101, HDAC Inhibitor MPT0E028, HDAC Inhibitor OBP-801, HDAC/EGFR/HER2 Inhibitor CUDC-101, HDAC6 Inhibitor KA2507, HDAC8 Inhibitor NBM-BMX, HDM2 Inhibitor HDM201, HDM2 Inhibitor MK-8242, Hedgehog Inhibitor IPI-609, Hematoporphyrin Derivative, Hemiasterlin Analog E7974, Henatinib Maleate, Heparan Sulfate Glycosaminoglycan Mimetic M402, Heparin Derivative SST0001, HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131, HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901, HER2 Inhibitor CP-724;714, HER2 Inhibitor DZD1516, HER2 Inhibitor TAS0728, HER2 Tri-specific Natural Killer Cell Engager DF1001, HER2-directed TLR8 Agonist SBT6050, HER2-targeted DARPin MP0274, HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302, HER2-targeting Antibody Fc Fragment FS102, Herba Scutellaria Barbata, Herbimycin, Heterodimeric Interleukin-15, Hexamethylene Bisacetamide, Hexaminolevulinate, Hexylresorcinol, HIF-1alpha Inhibitor PX-478, HIF-2alpha Inhibitor PT2385, HIF-2alpha Inhibitor PT2977, HIF2a RNAi ARO-HIF2, Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126, Histrelin Acetate, HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001, HLA-A*2402-Restricted Multipeptide Vaccine S-488410, HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201, HM2/MMAE Antibody-Drug Conjugate ALT-P7, Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine, Holmium Ho 166 Poly(L-Lactic Acid) Microspheres, Hormone Therapy, HPPH, HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202, HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c, HPV DNA Plasmids Therapeutic Vaccine VGX-3100, HPV E6/E7 DNA Vaccine GX-188E, HPV E6/E7-encoding Arenavirus Vaccine HB-201, HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C, HPV-16 E6 Peptides Vaccine/Candida albicans Extract, HPV-6-targeting Immunotherapeutic Vaccine INO-3106, HPV16 E7-specific HLA-A*02:01-restricted IgG1-Fc Fusion Protein CUE-101, HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN, HPV6/11-targeted DNA Plasmid Vaccine INO-3107, Hsp90 Antagonist KW-2478, Hsp90 Inhibitor AB-010, Hsp90 Inhibitor BIIB021, Hsp90 Inhibitor BIIB028, Hsp90 Inhibitor Debio 0932, Hsp90 Inhibitor DS-2248, Hsp90 Inhibitor HSP990, Hsp90 Inhibitor MPC-3100, Hsp90 Inhibitor PU-H71, Hsp90 Inhibitor SNX-5422 Mesylate, Hsp90 Inhibitor SNX-5542 Mesylate, Hsp90 Inhibitor TQB3474, Hsp90 Inhibitor XL888, Hsp90-targeted Photosensitizer HS-201, HSP90-targeted SN-38 Conjugate PEN-866, HSP90alpha/beta Inhibitor TAS-116, hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301, hTERT Vaccine V934/V935, hTERT-encoding DNA Vaccine INVAC-1, Hu14.18-IL2 Fusion Protein EMD 273063, HuaChanSu, Huaier Extract Granule, Huang Lian, huBC1-huIL12 Fusion Protein AS1409, Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736, Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104, Human MOAB LICO 28a32, Human Monoclonal Antibody 216, Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307, Human Papillomavirus 16 E7 Peptide/Padre 965.10, Hyaluronidase-zzxf/Pertuzumab/Trastuzumab, Hycanthone, Hydralazine Hydrochloride, Hydrocortisone Sodium Succinate, Hydroxychloroquine, Hydroxyprogesterone Caproate, Hydroxytyrosol, Hydroxyurea, Hypericin, Hypoxia-activated Prodrug TH-4000, I 131 Antiferritin Immunoglobulin, I 131 Monoclonal Antibody A33, I 131 Monoclonal Antibody CC49, I 131 Monoclonal Antibody F19, I 131 Monoclonal Antibody Lym-1, Iadademstat, Ianalumab, IAP Inhibitor APG-1387, IAP Inhibitor AT-406, IAP Inhibitor HGS1029, Ibandronate Sodium, Iberdomide, Iboctadekin, Ibritumomab Tiuxetan, Ibrutinib, Icotinib Hydrochloride, Icrucumab, ICT-121 Dendritic Cell Vaccine, Idarubicin, Idarubicin Hydrochloride, Idarubicin-Eluting Beads, Idasanutlin, Idecabtagene Vicleucel, Idelalisib, Idetrexed, IDH1 Mutant Inhibitor LY3410738, IDH1(R132) Inhibitor IDH305, IDH1R132H-Specific Peptide Vaccine PEPIDH1M, Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020, IDO Peptide Vaccine IO102, IDO-1 Inhibitor LY3381916, IDO/TDO Inhibitor HTI-1090, IDO/TDO Inhibitor LY-01013, IDO1 Inhibitor KHK2455, IDO1 Inhibitor MK-7162, IDO1 Inhibitor PF-06840003, IDO1/TDO2 Inhibitor DN1406131, IDO1/TDO2 Inhibitor M4112, Idronoxil, Idronoxil Suppository NOX66, Ieramilimab, Ifabotuzumab, Ifetroban, Ifosfamide, IGF-1R Inhibitor, IGF-1R Inhibitor PL225B, IGF-1R/IR Inhibitor KW-2450, IGF-methotrexate Conjugate, IL-10 Immunomodulator MK-1966, IL-12-expressing HSV-1 NSC 733972, IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051, IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000, IL-2 Recombinant Fusion Protein ALT-801, IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1, IL4-Pseudomonas Exotoxin Fusion Protein MDNA55, Ilginatinib, Ilixadencel, Iloprost, Ilorasertib, Imalumab, Imaradenant, Imatinib, Imatinib Mesylate, Imetelstat, Imetelstat Sodium, Imexon, Imgatuzumab, Imidazole Mustard, Imidazole-Pyrazole, Imifoplatin, Imipramine Blue, Imiquimod, Immediate-release Onapristone, Immediate-release Tablet Afuresertib, Immune Checkpoint Inhibitor ASP8374, Immunoconjugate RO5479599, Immunocytokine NHS-IL12, Immunocytokine NHS-IL2-LT, Immunomodulator LAM-003, Immunomodulator OHR/AVR118, Immunomodulatory Agent CC-11006, Immunomodulatory Oligonucleotide HYB2055, Immunotherapeutic Combination Product CMB305, Immunotherapeutic GSK1572932A, Immunotherapy Regimen MKC-1106-MT, Immunotoxin CMD-193, IMT-1012 Immunotherapeutic Vaccine, Inactivated Oncolytic Virus Particle GEN0101, Inalimarev, Incyclinide, Indatuximab Ravtansine, Indibulin, Indicine-N-Oxide, Indisulam, Individualized MVA-based Vaccine TG4050, Indocyanine Green-labeled Polymeric Micelles ONM-100, Indole-3-Carbinol, Indomethacin, Indoximod, Indoximod Prodrug NLG802, Indusatumab Vedotin, Inebilizumab, Inecalcitol, Infigratinib, Infigratinib Mesylate, Infliximab, Ingenol Mebutate, Ingenol Mebutate Gel, Iniparib, iNKT Cell Agonist ABX196, Innate Immunostimulator rBBX-01, INO-1001, Inodiftagene Vixteplasmid, iNOS Dimerization Inhibitor ASP9853, Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01, Inosine Monophosphate Dehydrogenase Inhibitor AVN944, Inositol, Inotuzumab Ozogamicin, Inproquone, Integrin alpha-2 Inhibitor E7820, Integrin Receptor Antagonist GLPG0187, Interferon, Interferon Alfa-2B, Interferon Alfa-N1, Interferon Alfa-N3, Interferon Alfacon-1, Interferon Beta-1A, Interferon Gamma-1b, Interferon-gamma-expressing Adenovirus Vaccine ASN-002, Interleukin Therapy, Interleukin-12-Fc Fusion Protein DF6002, Interleukin-15 Agonist Fusion Protein SHR1501, Interleukin-15 Fusion Protein BJ-001, Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306, Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101, Interleukin-2 Liposome, Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230, Intetumumab, Intiquinatine, Intoplicine, Inulin, Iobenguane I-131, Iodine I 124 Monoclonal Antibody A33, Iodine I 124 Monoclonal Antibody M5A, Iodine I 125-Anti-EGFR-425 Monoclonal Antibody, Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP, Iodine I 131 Apamistamab, Iodine I 131 Derlotuximab Biotin, Iodine I 131 Ethiodized Oil, Iodine I 131 IPA, Iodine I 131 MIP-1095, Iodine I 131 Monoclonal Antibody 81C6, Iodine I 131 Monoclonal Antibody BC8, Iodine I 131 Monoclonal Antibody CC49-deltaCH2, Iodine I 131 Monoclonal Antibody F16SIP, Iodine I 131 Monoclonal Antibody G-250, Iodine I 131 Monoclonal Antibody muJ591, Iodine I 131 Omburtamab, Iodine I 131 Rituximab, Iodine I 131 Tenatumomab, Iodine I 131 TM-601, Iodine I 131 Tositumomab, Iodine I-131, Ioflubenzamide I-131, Ionomycin, Ipafricept, Ipatasertib, Ipilimumab, Ipomeanol, Iproplatin, iPSC-derived CD16-expressing Natural Killer Cells FT516, iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596, iPSC-derived Natural Killer Cells FT500, IRAK4 Inhibitor CA-4948, Iratumumab, Iridium Ir 192, Irinotecan, Irinotecan Hydrochloride, Irinotecan Sucrosofate, Irinotecan-Eluting Beads, Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet, Irofulven, Iroplact, Irosustat, Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130, Isatuximab, Iso-fludelone, Isobrucein B, Isocoumarin NM-3, Isotretinoin, Ispinesib, Ispinesib Mesylate, ISS 1018 CpG Oligodeoxynucleotide, Istiratumab, Itacitinib, Itacitinib Adipate, ITK Inhibitor CPI-818, Itraconazole, Itraconazole Dispersion In Polymer Matrix, Ivaltinostat, Ivosidenib, Ivuxolimab, Ixabepilone, Ixazomib, Ixazomib Citrate, JAK Inhibitor, JAK Inhibitor INCB047986, JAK1 Inhibitor AZD4205, JAK1 Inhibitor INCB052793, JAK2 Inhibitor AZD1480, JAK2 Inhibitor BMS-911543, JAK2 Inhibitor XL019, JAK2/Src Inhibitor NS-018, Jin Fu Kang, JNK Inhibitor CC-401, Kanglaite, Kanitinib, Ketoconazole, Ketotrexate, KRAS G12C Inhibitor GDC-6036, KRAS G12C Inhibitor LY3499446, KRAS G12C Inhibitor MRTX849, KRAS Mutant-targeting AMG 510, KRAS-MAPK Signaling Pathway Inhibitor JAB-3312, KRASG12C Inhibitor JNJ-74699157, KRN5500, KSP Inhibitor AZD4877, KSP Inhibitor SB-743921, Kunecatechins Ointment, L-Gossypol, L-methylfolate, Labetuzumab Govitecan, Lactoferrin-derived Lytic Peptide LTX-315, Lacutamab, Ladiratuzumab Vedotin, Ladirubicin, Laetrile, LAIR-2 Fusion Protein NC410, Landogrozumab, Laniquidar, Lanreotide Acetate, Lapachone, Lapatinib, Lapatinib Ditosylate, Laprituximab Emtansine, Lapuleucel-T, Laromustine, Larotaxel, Larotinib Mesylate, Larotrectinib, Larotrectinib Sulfate, Lavendustin A, Lazertinib, Lead Pb 212 TCMC-trastuzumab, Lefitolimod, Leflunomide, Lenalidomide, Lenalidomide Analog KPG-121, Lentinan, Lenvatinib, Lenvatinib Mesylate, Lenzilumab, Lerociclib, Lestaurtinib, Letetresgene Autoleucel, Letolizumab, Letrozole, Leucovorin, Leucovorin Calcium, Leuprolide, Leuprolide Acetate, Leuprolide Mesylate Injectable Suspension, Leurubicin, Levetiracetam, Levoleucovorin Calcium, Levothyroxine, Levothyroxine Sodium, Lexatumumab, Lexibulin, Liarozole, Liarozole Fumarate, Liarozole Hydrochloride, Licartin, Licorice, Lifastuzumab Vedotin, Lifileucel, Lifirafenib, Light-activated AU-011, Light-Emitting Oncolytic Vaccinia Virus GL-ONC1, Lilotomab, Limonene; (+)-, Limonene; (+/-)-, Linifanib, Linoleyl Carbonate-Paclitaxel, Linperlisib, Linrodostat, Linsitinib, Lintuzumab, Liothyronine I-131, Liothyronine Sodium, Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1, Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191, Lipid Nanoparticle Encapsulated OX40L mRNA-2416, Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006, Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752, Liposomal Bcl-2 Antisense Oligonucleotide BP1002, Liposomal c-raf Antisense Oligonucleotide, Liposomal Curcumin, Liposomal Cytarabine, Liposomal Daunorubicin Citrate, Liposomal Docetaxel, Liposomal Eribulin Mesylate, Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101, Liposomal Irinotecan, Liposomal Mitoxantrone Hydrochloride, Liposomal MUC1/PET-lipid A Vaccine ONT-10, Liposomal NDDP, Liposomal Rhenium Re 186, Liposomal SN-38, Liposomal Topotecan FF-10850, Liposomal Vinorelbine, Liposomal Vinorelbine Tartrate, Liposome, Liposome-encapsulated Daunorubicin-Cytarabine, Liposome-Encapsulated Doxorubicin Citrate, Liposome-encapsulated miR-34 Mimic MRX34, Liposome-encapsulated OSI-7904, Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94, Liposome-encapsulated TAAs mRNA Vaccine W_ova1, Lirilumab, Lisavanbulin, Lisocabtagene Maraleucel, Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142, Litronesib, Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809, Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207, Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623, Liver X Receptor beta Agonist RGX-104, Lm-tLLO-neoantigens Vaccine ADXS-NEO, LMB-1 Immunotoxin, LMB-2 Immunotoxin, LMB-7 Immunotoxin, LMB-9 Immunotoxin, LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164, LMP-2:340-349 Peptide Vaccine, LMP-2:419-427 Peptide Vaccine, LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes, LMP7 Inhibitor M3258, Lobaplatin, Lodapolimab, Lometrexol, Lometrexol Sodium, Lomustine, Lonafarnib, Loncastuximab Tesirine, Long Peptide Vaccine 7, Long-acting Release Pasireotide, Lontucirev, Lorlatinib, Lorukafusp alfa, Lorvotuzumab Mertansine, Losatuxizumab Vedotin, Losoxantrone, Losoxantrone Hydrochloride, Lovastatin, LOXL2 Inhibitor PAT-1251, LRP5 Antagonist BI 905681, LRP5/6 Antagonist BI 905677, LSD1 Inhibitor CC-90011, LSD1 Inhibitor GSK2879552, LSD1 Inhibitor IMG-7289, LSD1 Inhibitor RO7051790, LSD1 Inhibitor SYHA1807, Lucanthone, Lucatumumab, Lucitanib, Luminespib, Luminespib Mesylate, Lumretuzumab, Lung-targeted Immunomodulator QBKPN, Lupartumab Amadotin, Lurbinectedin, Lurtotecan, Lurtotecan Liposome, Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1, Lutetium Lu 177 DOTA-biotin, Lutetium Lu 177 DOTA-N3-CTT1403, Lutetium Lu 177 DOTA-Tetulomab, Lutetium Lu 177 Dotatate, Lutetium Lu 177 Lilotomab-satetraxetan, Lutetium Lu 177 Monoclonal Antibody CC49, Lutetium Lu 177 Monoclonal Antibody J591, Lutetium Lu 177 PP-F11N, Lutetium Lu 177 Satoreotide Tetraxetan, Lutetium Lu 177-DOTA-EB-TATE, Lutetium Lu 177-DTPA-omburtamab, Lutetium Lu 177-Edotreotide, Lutetium Lu 177-NeoB, Lutetium Lu 177-PSMA-617, Lutetium Lu-177 Capromab, Lutetium Lu-177 Girentuximab, Lutetium Lu-177 PSMA-R2, Lutetium Lu-177 Rituximab, LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1, Lyophilized Black Raspberry Lozenge, Lyophilized Black Raspberry Saliva Substitute, Lysine-specific Demethylase 1 Inhibitor INCB059872, Lyso-Thermosensitive Liposome Doxorubicin, Maackia amurensis Seed Lectin, Macimorelin, Macitentan, Macrocycle-bridged STING Agonist E7766, Maekmoondong-tang, Mafosfamide, MAGE-10.A2, MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells, MAGE-A3 Multipeptide Vaccine GL-0817, MAGE-A3 Peptide Vaccine, MAGE-A3-specific Immunotherapeutic GSK 2132231A, MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201, Magnesium Valproate, Magrolimab, MALT1 Inhibitor JNJ-67856633, Manelimab, Mannosulfan, Mannosylerythritol Lipid, Mapatumumab, Maraba Oncolytic Virus Expressing Mutant HPV E6/E7, Marcellomycin, MARCKS Protein Inhibitor BIO-11006, Margetuximab, Marimastat, Marizomib, Masitinib Mesylate, Masoprocol, MAT2A Inhibitor AG-270, Matrix Metalloproteinase Inhibitor MMI270, Matuzumab, Mavelertinib, Mavorixafor, Maytansine, MCL-1 Inhibitor ABBV-467, MCL-1 Inhibitor AMG 176, MCL-1 inhibitor AMG 397, Mcl-1 Inhibitor AZD5991, Mcl-1 Inhibitor MIK665, MDM2 Antagonist ASTX295, MDM2 Antagonist RO5045337, MDM2 Antagonist RO6839921, MDM2 Inhibitor AMG-232, MDM2 Inhibitor AMGMDS3, MDM2 Inhibitor BI 907828, MDM2 Inhibitor KRT-232, MDM2/MDMX Inhibitor ALRN-6924, MDR Modulator CBT-1, Mechlorethamine, Mechlorethamine Hydrochloride, Mechlorethamine Hydrochloride Gel, Medorubicin, Medroxyprogesterone, Medroxyprogesterone Acetate, Megestrol Acetate, MEK 1/2 Inhibitor AS703988/MSC2015103B, MEK 1/2 Inhibitor FCN-159, MEK Inhibitor AZD8330, MEK Inhibitor CI-1040, MEK inhibitor CS3006, MEK Inhibitor GDC-0623, MEK Inhibitor HL-085, MEK Inhibitor PD0325901, MEK Inhibitor RO4987655, MEK Inhibitor SHR 7390, MEK Inhibitor TAK-733, MEK Inhibitor WX-554, MEK-1/MEKK-1 Inhibitor E6201, MEK/Aurora Kinase Inhibitor BI 847325, Melanoma Monoclonal Antibody hIgG2A, Melanoma TRP2 CTL Epitope Vaccine SCIB1, Melapuldencel-T, MELK Inhibitor OTS167, Melphalan, Melphalan Flufenamide, Melphalan Hydrochloride, Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex, Membrane-Disrupting Peptide EP-100, Menatetrenone, Menin-MLL Interaction Inhibitor SNDX-5613, Menogaril, Merbarone, Mercaptopurine, Mercaptopurine Anhydrous, Mercaptopurine Oral Suspension, Merestinib, Mesna, Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536, MET Kinase Inhibitor OMO-1, MET Tyrosine Kinase Inhibitor BMS-777607, MET Tyrosine Kinase Inhibitor EMD 1204831, MET Tyrosine Kinase Inhibitor PF-04217903, MET Tyrosine Kinase Inhibitor SAR125844, MET Tyrosine Kinase Inhibitor SGX523, MET x MET Bispecific Antibody REGN5093, Metamelfalan, MetAP2 Inhibitor APL-1202, MetAP2 Inhibitor SDX-7320, Metarrestin, Metatinib Tromethamine, Metformin, Metformin Hydrochloride, Methanol Extraction Residue of BCG, Methazolamide, Methionine Aminopeptidase 2 Inhibitor M8891, Methionine Aminopeptidase 2 Inhibitor PPI-2458, Methotrexate, Methotrexate Sodium, Methotrexate-E Therapeutic Implant, Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles, Methoxsalen, Methoxyamine, Methoxyamine Hydrochloride, Methyl-5-Aminolevulinate Hydrochloride Cream, Methylcantharidimide, Methylmercaptopurine Riboside, Methylprednisolone, Methylprednisolone Acetate, Methylprednisolone Sodium Succinate, Methylselenocysteine, Methyltestosterone, Metoprine, Mevociclib, Mezagitamab, Mibefradil, Mibefradil Dihydrochloride, Micellar Nanoparticle-encapsulated Epirubicin, Micro Needle Array-Doxorubicin, Microbiome GEN-001, Microbiome-derived Peptide Vaccine EO2401, Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300, Microtubule Inhibitor SCB01A, Midostaurin, Mifamurtide, Mifepristone, Milademetan Tosylate, Milataxel, Milatuzumab, Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110, Milciclib Maleate, Milk Thistle, Miltefosine, Minretumomab, Mipsagargin, Miptenalimab, Mirabegron, Miransertib, Mirdametinib, Mirvetuximab Soravtansine, Mirzotamab Clezutoclax, Misonidazole, Mistletoe Extract, Mitazalimab, Mitindomide, Mitobronitol, Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101, Mitoclomine, Mitoflaxone, Mitoguazone, Mitoguazone Dihydrochloride, Mitolactol, Mitomycin, Mitomycin A, Mitomycin B, Mitomycin C Analog KW-2149, Mitosis Inhibitor T 1101 Tosylate, Mitotane, Mitotenamine, Mitoxantrone, Mitoxantrone Hydrochloride, Mitozolomide, Mivavotinib, Mivebresib, Mivobulin, Mivobulin Isethionate, Mixed Bacteria Vaccine, MK0731, MKC-1, MKNK1 Inhibitor BAY 1143269, MMP Inhibitor S-3304, MNK1/2 Inhibitor ETC-1907206, Mobocertinib, Mocetinostat, Modakafusp Alfa, Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208, Modified Vitamin D Binding Protein Macrophage Activator EF-022, Modotuximab, MOF Compound RiMO-301, Mofarotene, Mogamulizumab, Molibresib, Molibresib Besylate, Momelotinib, Monalizumab, Monocarboxylate Transporter 1 Inhibitor AZD3965, Monoclonal Antibody 105AD7 Anti-idiotype Vaccine, Monoclonal Antibody 11D10, Monoclonal Antibody 11D10 Anti-Idiotype Vaccine, Monoclonal Antibody 14G2A, Monoclonal Antibody 1F5, Monoclonal Antibody 3622W94, Monoclonal Antibody 3F8, Monoclonal Antibody 3H1 Anti-Idiotype Vaccine, Monoclonal Antibody 4B5 Anti-Idiotype Vaccine, Monoclonal Antibody 7C11, Monoclonal Antibody 81C6, Monoclonal Antibody A1G4 Anti-Idiotype Vaccine, Monoclonal Antibody A27.15, Monoclonal Antibody A33, Monoclonal Antibody AbGn-7, Monoclonal Antibody AK002, Monoclonal Antibody ASP1948, Monoclonal Antibody CAL, Monoclonal Antibody CC49-delta CH2, Monoclonal Antibody CEP-37250/KHK2804, Monoclonal Antibody D6.12, Monoclonal Antibody E2.3, Monoclonal Antibody F19, Monoclonal Antibody GD2 Anti-Idiotype Vaccine, Monoclonal Antibody HeFi-1, Monoclonal Antibody Hu3S193, Monoclonal Antibody HuAFP31, Monoclonal Antibody HuHMFG1, Monoclonal Antibody huJ591, Monoclonal Antibody HuPAM4, Monoclonal Antibody IMMU-14, Monoclonal Antibody L6, Monoclonal Antibody Lym-1, Monoclonal Antibody m170, Monoclonal Antibody Me1-14 F(ab')2, Monoclonal Antibody muJ591, Monoclonal Antibody MX35 F(ab')2, Monoclonal Antibody NEO-201, Monoclonal Antibody R24, Monoclonal Antibody RAV12, Monoclonal Antibody SGN-14, Monoclonal Antibody TRK-950, Monoclonal Microbial EDP1503, Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100, Monomethyl Auristatin E, Morinda Citrifolia Fruit Extract, Morpholinodoxorubicin, Mosedipimod, Mosunetuzumab, Motesanib, Motesanib Diphosphate, Motexafin Gadolinium, Motexafin Lutetium, Motixafortide, Motolimod, MOv-gamma Chimeric Receptor Gene, Moxetumomab Pasudotox, Mps1 Inhibitor BAY 1217389, Mps1 Inhibitor BOS172722, mRNA-based Personalized Cancer Vaccine mRNA-4157, mRNA-based Personalized Cancer Vaccine NCI-4650, mRNA-based TriMix Melanoma Vaccine ECI-006, mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902, mRNA-derived KRAS-targeted Vaccine V941, mRNA-derived Lung Cancer Vaccine BI 1361849, mRNA-Derived Prostate Cancer Vaccine CV9103, mRNA-derived Prostate Cancer Vaccine CV9104, MTF-1 Inhibitor APTO-253 HCl, mTOR Inhibitor GDC-0349, mTOR Kinase Inhibitor AZD8055, mTOR Kinase Inhibitor CC-223, mTOR Kinase Inhibitor OSI-027, mTOR Kinase Inhibitor PP242, mTOR1/2 Kinase Inhibitor ME-344, mTORC 1/2 Inhibitor LXI-15029, mTORC1/2 Kinase Inhibitor BI 860585, mTORC1/mTORC2/DHFR Inhibitor ABTL0812, MUC-1/WT1 Peptide-primed Autologous Dendritic Cells, MUC1-targeted Peptide GO-203-2C, Mucoadhesive Paclitaxel Formulation, Multi-AGC Kinase Inhibitor AT13148, Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200, Multi-epitope HER2 Peptide Vaccine H2NVAC, Multi-epitope HER2 Peptide Vaccine TPIV100, Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107, Multi-kinase Inhibitor TPX-0022, Multi-kinase Inhibitor XL092, Multi-mode Kinase Inhibitor EOC317, Multi-neo-epitope Vaccine OSE 2101, Multifunctional/Multitargeted Anticancer Agent OMN54, Multikinase Inhibitor 4SC-203, Multikinase Inhibitor AEE788, Multikinase Inhibitor AT9283, Multikinase Inhibitor SAR103168, Multipeptide Vaccine S-588210, Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327, Muparfostat, Mureletecan, Murizatoclax, Muscadine Grape Extract, Mutant IDH1 Inhibitor DS-1001, Mutant p53 Activator COTI-2, Mutant-selective EGFR Inhibitor PF-06459988, MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP, MVA-BN Smallpox Vaccine, MVA-FCU1 TG4023, MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1, MYC-targeting siRNA DCR-MYC, Mycobacterium tuberculosis Arabinomannan Z-100, Mycobacterium w, Mycophenolic Acid, N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea, N-dihydrogalactochitosan, N-Methylformamide, N;N-Dibenzyl Daunomycin, NA17-A Antigen, NA17.A2 Peptide Vaccine, Nab-paclitaxel, Nab-paclitaxel/Rituximab-coated Nanoparticle AR160, Nadofaragene Firadenovec, Nagrestipen, Namirotene, Namodenoson, NAMPT Inhibitor OT-82, Nanafrocin, Nanatinostat, Nanocell-encapsulated miR-16-based microRNA Mimic, Nanoparticle Albumin-Bound Docetaxel, Nanoparticle Albumin-Bound Rapamycin, Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404, Nanoparticle Paclitaxel Ointment SOR007, Nanoparticle-based Paclitaxel Suspension, Nanoparticle-encapsulated Doxorubicin Hydrochloride, Nanoscale Coordination Polymer Nanoparticles CPI-100, Nanosomal Docetaxel Lipid Suspension, Napabucasin, Naphthalimide Analogue UNBS5162, Naptumomab Estafenatox, Naquotinib, Naratuximab Emtansine, Narnatumab, Natalizumab, Natural IFN-alpha OPC-18, Natural Killer Cells ZRx101, Navarixin, Navicixizumab, Navitoclax, Navoximod, Navy Bean Powder, Naxitamab, Nazartinib, ncmtRNA Oligonucleotide Andes-1537, Necitumumab, Nedaplatin, NEDD8 Activating Enzyme E1 Inhibitor TAS4464, Nedisertib, Nelarabine, Nelipepimut-S, Nelipepimut-S Plus GM-CSF Vaccine, Nemorubicin, Nemorubicin Hydrochloride, Neoantigen Vaccine GEN-009, Neoantigen-based Glioblastoma Vaccine, Neoantigen-based Melanoma-Poly-ICLC Vaccine, Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine, Neoantigen-based Therapeutic Cancer Vaccine GRT-C903, Neoantigen-based Therapeutic Cancer Vaccine GRT-R904, Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017, Neratinib, Neratinib Maleate, Nesvacumab, NG-nitro-L-arginine, Niacinamide, Niclosamide, Nicotinamide Riboside, Nidanilimab, Nifurtimox, Nilotinib, Nilotinib Hydrochloride Anhydrous, Nilotinib Hydrochloride Monohydrate, Nilutamide, Nimesulide-Hyaluronic Acid Conjugate CA102N, Nimodipine, Nimotuzumab, Nimustine, Nimustine Hydrochloride, Ningetinib Tosylate, Nintedanib, Niraparib, Niraparib Tosylate Monohydrate, Nirogacestat, Nitric Oxide-Releasing Acetylsalicylic Acid Derivative, Nitrogen Mustard Prodrug PR-104, Nitroglycerin Transdermal Patch, Nivolumab, NLRP3 Agonist BMS-986299, Nocodazole, Nogalamycin, Nogapendekin Alfa, Nolatrexed Dihydrochloride, Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201, Norgestrel, North American Ginseng Extract AFX-2, Nortopixantrone, Noscapine, Noscapine Hydrochloride, Not Otherwise Specified, Notch Signaling Inhibitor PF-06650808, Notch Signaling Pathway Inhibitor MK0752, NTRK/ROS1 Inhibitor DS-6051b, Nucleolin Antagonist IPP-204106N, Nucleoside Analog DFP-10917, Nucleotide Analog Prodrug NUC-3373, Nucleotide Analogue GS 9219, Numidargistat, Nurulimab, Nutlin-3a, Nutraceutical TBL-12, NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611, NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301, NY-ESO-1/GLA-SE Vaccine ID-G305, NY-ESO-B, O-Chloroacetylcarbamoylfumagillol, O6-Benzylguanine, Obatoclax Mesylate, Obinutuzumab, Oblimersen Sodium, Ocaratuzumab, Ocrelizumab, Octreotide, Octreotide Acetate, Octreotide Pamoate, Odronextamab, Ofatumumab, Ofranergene Obadenovec, Oglufanide Disodium, Olaparib, Olaptesed Pegol, Olaratumab, Oleandrin, Oleclumab, Oligo-fucoidan, Oligonucleotide SPC2996, Olinvacimab, Olivomycin, Olmutinib, Oltipraz, Olutasidenib, Olvimulogene Nanivacirepvec, Omacetaxine Mepesuccinate, Ombrabulin, Omipalisib, Onalespib, Onalespib Lactate, Onartuzumab, Onatasertib, Oncolytic Adenovirus Ad5-DNX-2401, Oncolytic Adenovirus ORCA-010, Oncolytic Herpes Simplex Virus-1 ONCR-177, Oncolytic HSV-1 C134, Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011, Oncolytic HSV-1 G207, Oncolytic HSV-1 NV1020, Oncolytic HSV-1 rQNestin34.5v.2, Oncolytic HSV-1 rRp450, Oncolytic HSV1716, Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein, Oncolytic Newcastle Disease Virus MEDI5395, Oncolytic Newcastle Disease Virus MTH-68H, Oncolytic Newcastle Disease Virus Strain PV701, Oncolytic Virus ASP9801, Oncolytic Virus RP1, Ondansetron Hydrochloride, Ontorpacept, Ontuxizumab, Onvansertib, Onvatilimab, Opaganib, OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule, Opioid Growth Factor, Opolimogene Capmilisbac, Oportuzumab Monatox, Oprozomib, Opucolimab, Oral Aminolevulinic Acid Hydrochloride, Oral Azacitidine, Oral Cancer Vaccine V3-OVA, Oral Docetaxel, Oral Fludarabine Phosphate, Oral Hsp90 Inhibitor IPI-493, Oral Ixabepilone, Oral Microencapsulated Diindolylmethane, Oral Milataxel, Oral Myoma Vaccine V3-myoma, Oral Pancreatic Cancer Vaccine V3-P, Oral Picoplatin, Oral Sodium Phenylbutyrate, Oral Topotecan Hydrochloride, Orantinib, Oraxol, Oregovomab, Orelabrutinib, Ormaplatin, Ortataxel, Orteronel, Orvacabtagene Autoleucel, Osilodrostat, Osimertinib, Other, Otlertuzumab, Ovapuldencel-T, Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006, Ovine Submaxillary Mucin, OX40L-expressing Oncolytic Adenovirus DNX-2440, Oxaliplatin, Oxaliplatin Eluting Beads, Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome, Oxcarbazepine, Oxeclosporin, Oxidative Phosphorylation Inhibitor IACS-010759, Oxidative Phosphorylation Inhibitor IM156, Oxidopamine, OxPhos Inhibitor VLX600, Ozarelix, P-cadherin Antagonist PF-03732010, P-cadherin Inhibitor PCA062, P-cadherin-targeting Agent PF-06671008, P-p68 Inhibitor RX-5902, P-TEFb Inhibitor BAY1143572, p300/CBP Bromodomain Inhibitor CCS1477, p38 MAPK Inhibitor LY3007113, p53 Peptide Vaccine MPS-128, p53-HDM2 Interaction Inhibitor MI-773, p53-HDM2 Protein-protein Interaction Inhibitor APG-115, p53/HDM2 Interaction Inhibitor CGM097, p70S6K Inhibitor LY2584702, p70S6K/Akt Inhibitor MSC2363318A, p97 Inhibitor CB-5083, p97 Inhibitor CB-5339, p97 Inhibitor CB-5339 Tosylate, Paclitaxel, Paclitaxel Ceribate, Paclitaxel Injection Concentrate for Nanodispersion, Paclitaxel Liposome, Paclitaxel Poliglumex, Paclitaxel Polymeric Micelle Formulation NANT-008, Paclitaxel PPE Microspheres, Paclitaxel Trevatide, Paclitaxel Vitamin E-Based Emulsion, Paclitaxel-Loaded Polymeric Micelle, Pacmilimab, Pacritinib, Padeliporfin, Padoporfin, PAK4 Inhibitor PF-03758309, PAK4/NAMPT Inhibitor KPT-9274, Palbociclib, Palbociclib Isethionate, Palifosfamide, Palifosfamide Tromethamine, Palladium Pd-103, Palonosetron Hydrochloride, Pamidronate Disodium, Pamidronic Acid, Pamiparib, Pamrevlumab, pan FGFR Inhibitor PRN1371, Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514, Pan-AKT Inhibitor ARQ751, Pan-AKT Kinase Inhibitor GSK690693, Pan-FGFR Inhibitor LY2874455, Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806, pan-HER Kinase Inhibitor AC480, Pan-IDH Mutant Inhibitor AG-881, Pan-KRAS Inhibitor BI 1701963, Pan-Mutant-IDH1 Inhibitor Bay-1436032, Pan-mutation-selective EGFR Inhibitor CLN-081, pan-PI3K Inhibitor CLR457, pan-PI3K/mTOR Inhibitor SF1126, Pan-PIM Inhibitor INCB053914, pan-PIM Kinase Inhibitor AZD1208, pan-PIM Kinase Inhibitor NVP-LGB-321, pan-RAF Inhibitor LXH254, Pan-RAF Inhibitor LY3009120, pan-RAF Kinase Inhibitor CCT3833, pan-RAF Kinase Inhibitor TAK-580, Pan-RAR Agonist/AP-1 Inhibitor LGD 1550, Pan-TRK Inhibitor NOV1601, Pan-TRK Inhibitor ONO-7579, Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981, Pancratistatin, Panitumumab, Panobinostat, Panobinostat Nanoparticle Formulation MTX110, Panulisib, Paricalcitol, PARP 1/2 Inhibitor IMP4297, PARP 1/2 Inhibitor NOV1401, PARP Inhibitor AZD2461, PARP Inhibitor CEP-9722, PARP Inhibitor E7016, PARP Inhibitor NMS-03305293, PARP-1/2 Inhibitor ABT-767, PARP/Tankyrase Inhibitor 2X-121, PARP7 Inhibitor RBN-2397, Parsaclisib, Parsaclisib Hydrochloride, Parsatuzumab, Partially Engineered T-regulatory Cell Donor Graft TRGFT-201, Parvovirus H-1, Pasireotide, Pasotuxizumab, Patidegib, Patidegib Topical Gel, Patritumab, Patritumab Deruxtecan, Patupilone, Paxalisib, Pazopanib, Pazopanib Hydrochloride, pbi-shRNA STMN1 Lipoplex, PBN Derivative OKN-007, PCNU, PD-1 Directed Probody CX-188, PD-1 Inhibitor, PD-L1 Inhibitor GS-4224, PD-L1 Inhibitor INCB086550, PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480, PD-L1/PD-L2/VISTA Antagonist CA-170, PDK1 Inhibitor AR-12, pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0, PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1, PEG-interleukin-2, PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1, PEG-Proline-Interferon Alfa-2b, Pegargiminase, Pegaspargase, Pegdinetanib, Pegfilgrastim, Pegilodecakin, Peginterferon Alfa-2a, Peginterferon Alfa-2b, Pegvisomant, Pegvorhyaluronidase Alfa, Pegylated Deoxycytidine Analogue DFP-14927, Pegylated Interferon Alfa, Pegylated Liposomal Belotecan, Pegylated Liposomal Doxorubicin Hydrochloride, Pegylated Liposomal Irinotecan, Pegylated Liposomal Mitomycin C Lipid-based Prodrug, Pegylated Liposomal Mitoxantrone Hydrochloride, Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010, Pegylated Paclitaxel, Pegylated Recombinant Human Arginase I BCT-100, Pegylated Recombinant Human Hyaluronidase PH20, Pegylated Recombinant Interleukin-2 THOR-707, Pegylated Recombinant L-asparaginase Erwinia chrysanthemi, Pegylated SN-38 Conjugate PLX038, Pegzilarginase, Pelabresib, Pelareorep, Peldesine, Pelitinib, Pelitrexol, Pembrolizumab, Pemetrexed, Pemetrexed Disodium, Pemigatinib, Pemlimogene Merolisbac, Penberol, Penclomedine, Penicillamine, Pentamethylmelamine, Pentamustine, Pentostatin, Pentoxifylline, PEOX-based Polymer Encapsulated Paclitaxel FID-007, PEP-3-KLH Conjugate Vaccine, Pepinemab, Peplomycin, Peplomycin Sulfate, Peposertib, Peptichemio, Peptide 946 Melanoma Vaccine, Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine, Peretinoin, Perflenapent Emulsion, Perfosfamide, Perifosine, Perillyl Alcohol, Personalized ALL-specific Multi-HLA-binding Peptide Vaccine, Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC, Personalized Cancer Vaccine RO7198457, Personalized Neoantigen DNA Vaccine GNOS-PV01, Personalized Neoantigen DNA Vaccine GNOS-PVO2, Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01, Personalized Neoepitope Yeast Vaccine YE-NEO-001, Personalized Peptide Cancer Vaccine NEO-PV-01, Pertuzumab, Pevonedistat, Pexastimogene Devacirepvec, Pexidartinib, Pexmetinib, PGG Beta-Glucan, PGLA/PEG Copolymer-Based Paclitaxel, PH20 Hyaluronidase-expressing Adenovirus VCN-01, Phaleria macrocarpa Extract DLBS-1425, Pharmacological Ascorbate, Phellodendron amurense Bark Extract, Phenesterin, Phenethyl Isothiocyanate, Phenethyl Isothiocyanate-containing Watercress Juice, Phenyl Acetate, Phenytoin Sodium, Phosphaplatin PT-112, Phosphatidylcholine-Bound Silybin, Phospholipid Ether-drug Conjugate CLR 131, Phosphoramide Mustard, Phosphorodiamidate Morpholino Oligomer AVI-4126, Phosphorus P-32, Photodynamic Compound TLD-1433, Photosensitizer LUZ 11, Phytochlorin Sodium-Polyvinylpyrrolidone Complex, PI3K Alpha/Beta Inhibitor BAY1082439, PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate, PI3K Inhibitor ACP-319, PI3K Inhibitor BGT226, PI3K Inhibitor GDC-0084, PI3K Inhibitor GDC0077, PI3K Inhibitor GSK1059615, PI3K Inhibitor WX-037, PI3K Inhibitor ZSTK474, PI3K p110beta/delta Inhibitor KA2237, PI3K-alpha Inhibitor MEN1611, PI3K-beta Inhibitor GSK2636771, PI3K-beta Inhibitor SAR260301, PI3K-delta Inhibitor AMG 319, PI3K-delta Inhibitor HMPL 689, PI3K-delta Inhibitor INCB050465, PI3K-delta Inhibitor PWT143, PI3K-delta Inhibitor SHC014748M, PI3K-delta Inhibitor YY-20394, PI3K-gamma Inhibitor IPI-549, PI3K/BET Inhibitor LY294002, PI3K/mTOR Kinase Inhibitor DS-7423, PI3K/mTOR Kinase Inhibitor PF-04691502, PI3K/mTOR Kinase Inhibitor VS-5584, PI3K/mTOR Kinase Inhibitor WXFL10030390, PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170, PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901, PI3Ka/mTOR Inhibitor PKI-179, PI3Kalpha Inhibitor AZD8835, PI3Kbeta Inhibitor AZD8186, PI3Kdelta Inhibitor GS-9901, Pibenzimol, Pibrozelesin, Pibrozelesin Hydrobromide, Picibanil, Picoplatin, Picrasinoside H, Picropodophyllin, Pictilisib, Pictilisib Bismesylate, Pidilizumab, Pilaralisib, PIM Kinase Inhibitor LGH447, PIM Kinase Inhibitor SGI-1776, PIM Kinase Inhibitor TP-3654, PIM/FLT3 Kinase Inhibitor SEL24, Pimasertib, Pimitespib, Pimurutamab, Pinatuzumab Vedotin, Pingyangmycin, Pinometostat, Pioglitazone, Pioglitazone Hydrochloride, Pipendoxifene, Piperazinedione, Piperine Extract (Standardized), Pipobroman, Piposulfan, Pirarubicin, Pirarubicin Hydrochloride, Pirfenidone, Piritrexim, Piritrexim Isethionate, Pirotinib, Piroxantrone, Piroxantrone Hydrochloride, Pixantrone, Pixantrone Dimaleate, Pixatimod, PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231, PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521, PKC-beta Inhibitor MS-553, Placebo, Pladienolide Derivative E7107, Plamotamab, Plasmid DNA Vaccine pING-hHER3FL, Platinum, Platinum Acetylacetonate-Titanium Dioxide Nanoparticles, Platinum Compound, Plevitrexed, Plicamycin, Plinabulin, Plitidepsin, Plk1 Inhibitor BI 2536, PLK1 Inhibitor CYC140, PLK1 Inhibitor TAK-960, Plocabulin, Plozalizumab, pNGVL4a-CRT-E6E7L2 DNA Vaccine, pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2, Pol I Inhibitor CX5461, Polatuzumab Vedotin, Polidocanol, Poliglusam, Polo-like Kinase 1 Inhibitor GSK461364, Polo-like Kinase 1 Inhibitor MK1496, Polo-like Kinase 1 Inhibitor NMS-1286937, Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate, Poly-alendronate Dextran-Guanidine Conjugate, Poly-gamma Glutamic Acid, Polyamine Analog SL11093, Polyamine Analogue PG11047, Polyamine Analogue SBP-101, Polyamine Transport Inhibitor AMXT-1501 Dicaprate, Polyandrol, Polyethylene Glycol Recombinant Endostatin, Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318, Polymer-conjugated IL-15 Receptor Agonist NKTR-255, Polymer-encapsulated Luteolin Nanoparticle, Polymeric Camptothecin Prodrug XMT-1001, Polypodium leucotomos Extract, Polysaccharide-K, Polysialic Acid, Polyunsaturated Fatty Acid, Polyvalent Melanoma Vaccine, Pomalidomide, Pomegranate Juice, Pomegranate Liquid Extract, Ponatinib, Ponatinib Hydrochloride, Porcupine Inhibitor CGX1321, Porcupine Inhibitor ETC-1922159, Porcupine Inhibitor RXC004, Porcupine Inhibitor WNT974, Porcupine Inhibitor XNW7201, Porfimer Sodium, Porfiromycin, Poziotinib, PPAR Alpha Antagonist TPST-1120, PR1 Leukemia Peptide Vaccine, Pracinostat, Pralatrexate, Pralsetinib, Praluzatamab Ravtansine, PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701, Pravastatin Sodium, Prednimustine, Prednisolone, Prednisolone Acetate, Prednisolone Sodium Phosphate, Prednisone, Prexasertib, Prexigebersen, PRIMA-1 Analog APR-246, Prime Cancer Vaccine MVA-BN-CV301, Prinomastat, PRMT1 Inhibitor GSK3368715, PRMT5 Inhibitor JNJ-64619178, PRMT5 Inhibitor PRT811, Proapoptotic Sulindac Analog CP-461, Procarbazine, Procarbazine Hydrochloride, Procaspase Activating Compound-1 VO-100, Progestational IUD, Prohibitin-Targeting Peptide 1, Prolgolimab, Prostaglandin E2 EP4 Receptor Inhibitor AN0025, Prostaglandin E2 EP4 Receptor Inhibitor E7046, Prostate Cancer Vaccine ONY-P1, Prostate Health Cocktail Dietary Supplement, Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024, Protease-activated Anti-PD-L1 Antibody Prodrug CX-072, Protein Arginine Methyltransferase 5 Inhibitor GSK3326595, Protein Arginine Methyltransferase 5 Inhibitor PF-06939999, Protein Arginine Methyltransferase 5 Inhibitor PRT543, Protein Kinase C Inhibitor IDE196, Protein Phosphatase 2A Inhibitor LB-100, Protein Stabilized Liposomal Docetaxel Nanoparticles, Protein Tyrosine Kinase 2 Inhibitor IN10018, Proxalutamide, PSA/IL-2/GM-CSF Vaccine, PSA/PSMA DNA Plasmid INO-5150, Pseudoisocytidine, PSMA-targeted Docetaxel Nanoparticles BIND-014, PSMA-targeted Tubulysin B-containing Conjugate EC1169, PSMA/CD3 Tri-specific T-cell Activating Construct HPN424, PTEF-b/CDK9 Inhibitor BAY1251152, Pterostilbene, Pumitepa, Puquitinib, Puquitinib Mesylate, Puromycin, Puromycin Hydrochloride, PV-10, PVA Microporous Hydrospheres/Doxorubicin Hydrochloride, Pyrazinamide, Pyrazoloacridine, Pyridyl Cyanoguanidine CHS 828, Pyrotinib, Pyrotinib Dimaleate, Pyroxamide, Pyruvate Kinase Inhibitor TLN-232, Pyruvate Kinase M2 Isoform Activator TP-1454, Qilisheng Immunoregulatory Oral Solution, Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine, Quarfloxin, Quinacrine Hydrochloride, Quinine, Quisinostat, Quizartinib, R-(-)-Gossypol Acetic Acid, Rabusertib, Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88, Racotumomab, RAD51 Inhibitor CYT-0851, Radgocitabine, Radgocitabine Hydrochloride, Radioactive Iodine, Radiolabeled CC49, Radium Ra 223 Dichloride, Radium Ra 224-labeled Calcium Carbonate Microparticles, Radix Angelicae Sinensis/Radix Astragali Herbal Supplement, Radotinib Hydrochloride, Raf Kinase Inhibitor HM95573, RAF Kinase Inhibitor L-779450, RAF Kinase Inhibitor XL281, Ragifilimab, Ralaniten Acetate, Ralimetinib Mesylate, Raloxifene, Raloxifene Hydrochloride, Raltitrexed, Ramucirumab, Ranibizumab, Ranimustine, Ranolazine, Ranpirnase, RARalpha Agonist IRX5183, Ras Inhibitor, Ras Peptide ASP, Ras Peptide CYS, Ras Peptide VAL, Razoxane, Realgar-Indigo naturalis Formulation, Rebastinib Tosylate, Rebeccamycin, Rebimastat, Receptor Tyrosine Kinase Inhibitor R1530, Recombinant Adenovirus-p53 SCH-58500, Recombinant Anti-WT1 Immunotherapeutic GSK2302024A, Recombinant Bacterial Minicells VAX014, Recombinant Bispecific Single-Chain Antibody rM28, Recombinant CD40-Ligand, Recombinant Erwinia asparaginase JZP-458, Recombinant Erythropoietin, Recombinant Fas Ligand, Recombinant Fractalkine, Recombinant Granulocyte-Macrophage Colony-Stimulating Factor, Recombinant Human 6Ckine, Recombinant Human Adenovirus Type 5 H101, Recombinant Human Angiotensin Converting Enzyme 2 APN01, Recombinant Human Apolipoprotein(a) Kringle V MG1102, Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine, Recombinant Human Endostatin, Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine, Recombinant Human Papillomavirus 11-valent Vaccine, Recombinant Human Papillomavirus Bivalent Vaccine, Recombinant Human Papillomavirus Nonavalent Vaccine, Recombinant Human Plasminogen Kringle 5 Domain ABT 828, Recombinant Human TRAIL-Trimer Fusion Protein SCB-313, Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301, Recombinant Interferon, Recombinant Interferon Alfa, Recombinant Interferon Alfa-1b, Recombinant Interferon Alfa-2a, Recombinant Interferon Alfa-2b, Recombinant Interferon Alpha 2b-like Protein, Recombinant Interferon Beta, Recombinant Interferon Gamma, Recombinant Interleukin-12, Recombinant Interleukin-13, Recombinant Interleukin-18, Recombinant Interleukin-2, Recombinant Interleukin-6, Recombinant KSA Glycoprotein CO17-1A, Recombinant Leukocyte Interleukin, Recombinant Leukoregulin, Recombinant Luteinizing Hormone, Recombinant Macrophage Colony-Stimulating Factor, Recombinant MAGE-3.1 Antigen, Recombinant MIP1-alpha Variant ECI301, Recombinant Modified Vaccinia Ankara-5T4 Vaccine, Recombinant Oncolytic Poliovirus PVS-RIPO, Recombinant Platelet Factor 4, Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A, Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207, Recombinant Super-compound Interferon, Recombinant Thyroglobulin, Recombinant Thyrotropin Alfa, Recombinant Transforming Growth Factor-Beta, Recombinant Transforming Growth Factor-Beta-2, Recombinant Tumor Necrosis Factor-Alpha, Recombinant Tyrosinase-Related Protein-2, Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter, Redaporfin, Refametinib, Regorafenib, Relacorilant, Relatlimab, Relugolix, Remetinostat, Renal Cell Carcinoma Peptides Vaccine IMA901, Reparixin, Repotrectinib, Resiquimod, Resiquimod Topical Gel, Resistant Starch, Resminostat, Resveratrol, Resveratrol Formulation SRT501, RET Inhibitor DS-5010, RET Mutation/Fusion Inhibitor BLU-667, RET/SRC Inhibitor TPX-0046, Retaspimycin, Retaspimycin Hydrochloride, Retelliptine, Retifanlimab, Retinoic Acid Agent Ro 16-9100, Retinoid 9cUAB30, Retinol, Retinyl Acetate, Retinyl Palmitate, Retrovector Encoding Mutant Anti-Cyclin G1, Revdofilimab, Rexinoid NRX 194204, Rezivertinib, RFT5-dgA Immunotoxin IMTOX25, Rhenium Re 188 BMEDA-labeled Liposomes, Rhenium Re-186 Hydroxyethylidene Diphosphonate, Rhenium Re-188 Ethiodized Oil, Rhenium Re-188 Etidronate, Rhizoxin, RhoC Peptide Vaccine RV001V, Ribociclib, Ribociclib/Letrozole, Ribonuclease QBI-139, Ribosome-Inactivating Protein CY503, Ribozyme RPI.4610, Rice Bran, Ricolinostat, Ridaforolimus, Rigosertib, Rigosertib Sodium, Rilimogene Galvacirepvec, Rilimogene Galvacirepvec/Rilimogene Glafolivec, Rilimogene Glafolivec, Rilotumumab, Rindopepimut, Ripertamab, RIPK1 Inhibitor GSK3145095, Ripretinib, Risperidone Formulation in Rumenic Acid, Ritrosulfan, Rituximab, Rituximab and Hyaluronidase Human, Rituximab Conjugate CON-4619, Riviciclib, Rivoceranib, Rivoceranib Mesylate, RNR Inhibitor COH29, Robatumumab, Roblitinib, ROBO1-targeted BiCAR-NKT Cells, Rocakinogene Sifuplasmid, Rocapuldencel-T, Rociletinib, Rodorubicin, Roducitabine, Rofecoxib, Roflumilast, Rogaratinib, Rogletimide, Rolinsatamab Talirine, Romidepsin, Roneparstat, Roniciclib, Ropeginterferon Alfa-2B, Ropidoxuridine, Ropocamptide, Roquinimex, RORgamma Agonist LYC-55716, Rosabulin, Rose Bengal Solution PV-10, Rosiglitazone Maleate, Rosmantuzumab, Rosopatamab, Rosuvastatin, Rovalpituzumab Tesirine, RSK1-4 Inhibitor PMD-026, Rubitecan, Rucaparib, Rucaparib Camsylate, Rucaparib Phosphate, Ruthenium Ru-106, Ruthenium-based Small Molecule Therapeutic BOLD-100, Ruthenium-based Transferrin Targeting Agent NKP-1339, Ruxolitinib, Ruxolitinib Phosphate, Ruxotemitide, S-Adenosylmethionine, S-equol, S1P Receptor Agonist KRP203, Sabarubicin, Sabatolimab, Sacituzumab Govitecan, Sacubitril/Valsartan, Safingol, Sagopilone, Salirasib, Salmonella VNP20009, Sam68 Modulator CWP232291, Samalizumab, Samarium Sm 153-DOTMP, Samotolisib, Samrotamab Vedotin, Samuraciclib, Sapacitabine, Sapanisertib, Sapitinib, Saracatinib, Saracatinib Difumarate, SarCNU, Sardomozide, Sargramostim, Sasanlimab, Satraplatin, Savolitinib, SBIL-2, Scopoletin, SDF-1 Receptor Antagonist PTX-9908, Seclidemstat, Sedoxantrone Trihydrochloride, Selatinib Ditosilate, Selective Androgen Receptor Modulator RAD140, Selective Cytokine Inhibitory Drug CC-1088, Selective Estrogen Receptor Degrader AZD9496, Selective Estrogen Receptor Degrader AZD9833, Selective Estrogen Receptor Degrader LSZ102, Selective Estrogen Receptor Degrader LX-039, Selective Estrogen Receptor Degrader LY3484356, Selective Estrogen Receptor Degrader SRN-927, Selective Estrogen Receptor Modulator CC-8490, Selective Estrogen Receptor Modulator TAS-108, Selective Glucocorticoid Receptor Antagonist CORT125281, Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352, Seliciclib, Selicrelumab, Selinexor, Selitrectinib, Selonsertib, Selpercatinib, Selumetinib, Selumetinib Sulfate, Semaxanib, Semuloparin, Semustine, Seneca Valley Virus-001, Seocalcitol, Sepantronium Bromide, Serabelisib, Serclutamab Talirine, SERD D-0502, SERD G1T48, SERD GDC-9545, SERD SAR439859, SERD SHR9549, SERD ZN-c5, Serdemetan, Sergiolide, Seribantumab, Serine/Threonine Kinase Inhibitor CBP501, Serine/Threonine Kinase Inhibitor XL418, Serplulimab, Sevacizumab, Seviteronel, Shared Anti-Idiotype-AB-S006, Shared Anti-Idiotype-AB-S024A, Shark Cartilage, Shark Cartilage Extract AE-941, Shenqi Fuzheng Injection SQ001, Sho-Saiko-To, Short Chain Fatty Acid HQK-1004, SHP-1 Agonist SC-43, SHP2 Inhibitor JAB-3068, SHP2 Inhibitor RLY-1971, SHP2 Inhibitor RMC-4630, SHP2 Inhibitor TNO155, Shu Yu Wan Formula, Sialyl Tn Antigen, Sialyl Tn-KLH Vaccine, Sibrotuzumab, siG12D LODER, Silatecan AR-67, Silibinin, Silicon Phthalocyanine 4, Silmitasertib Sodium, Siltuximab, Simalikalactone D, Simeprevir, Simlukafusp Alfa, Simmitinib, Simotaxel, Simtuzumab, Simurosertib, Sintilimab, Siplizumab, Sipuleucel-T, Siremadlin, siRNA-transfected Peripheral Blood Mononuclear Cells APN401, Sirolimus, SIRPa-4-1BBL Fusion Protein DSP107, SIRPa-Fc Fusion Protein TTI-621, SIRPa-Fc-CD40L Fusion Protein SL-172154, SIRPa-IgG4-Fc Fusion Protein TTI-622, Sitimagene Ceradenovec, Sitravatinib, Sivifene, Sizofiran, SLC6A8 Inhibitor RGX-202, SLCT Inhibitor GNS561, SMAC Mimetic BI 891065, Smac Mimetic GDC-0152, Smac Mimetic GDC-0917, Smac Mimetic LCL161, SMO Protein Inhibitor ZSP1602, Smoothened Antagonist BMS-833923, Smoothened Antagonist LDE225 Topical, Smoothened Antagonist LEQ506, Smoothened Antagonist TAK-441, SN-38-Loaded Polymeric Micelles NK012, SNS01-T Nanoparticles, Sobuzoxane, Sodium Borocaptate, Sodium Butyrate, Sodium Dichloroacetate, Sodium Iodide I-131, Sodium Metaarsenite, Sodium Phenylbutyrate, Sodium Salicylate, Sodium Selenite, Sodium Stibogluconate, Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108, Sofituzumab Vedotin, Solitomab, Sonepcizumab, Sonidegib, Sonolisib, Sorafenib, Sorafenib Tosylate, Sorghum bicolor Supplement, Sotigalimab, Sotorasib, Sotrastaurin, Sotrastaurin Acetate, Soy Isoflavones, Soy Protein Isolate, Spanlecortemlocel, Sparfosate Sodium, Sparfosic Acid, Spartalizumab, Spebrutinib, Spherical Nucleic Acid Nanoparticle NU-0129, Spirogermanium, Spiromustine, Spiroplatin, Splicing Inhibitor H3B-8800, Spongistatin, Squalamine Lactate, SR-BP1/HSI Inhibitor SR31747A, SR-T100 Gel, Src Kinase Inhibitor AP 23846, Src Kinase Inhibitor KX2-391, Src Kinase Inhibitor KX2-391 Ointment, Src Kinase Inhibitor M475271, Src/Abl Kinase Inhibitor AZD0424, Src/tubulin Inhibitor KX02, SRPK1/ABCG2 Inhibitor SCO-101, ssRNA-based Immunomodulator CV8102, SSTR2-targeting Protein/DM1 Conjugate PEN-221, St. John's Wort, Stallimycin, Staphylococcal Enterotoxin A, Staphylococcal Enterotoxin B, STAT Inhibitor OPB-111077, STAT3 Inhibitor DSP-0337, STAT3 Inhibitor OPB-31121, STAT3 Inhibitor OPB-51602, STAT3 Inhibitor TTI-101, STAT3 Inhibitor WP1066, Staurosporine, STING Agonist BMS-986301, STING Agonist GSK3745417, STING Agonist IMSA101, STING Agonist MK-1454, STING Agonist SB 11285, STING Agonist TAK-676, STING-activating Cyclic Dinucleotide Agonist MIW815, STING-expressing E. coli SYNB1891, Streptonigrin, Streptozocin, Strontium Chloride Sr-89, Submicron Particle Paclitaxel Sterile Suspension, Sugemalimab, Sulfatinib, Sulforaphane, Sulindac, Sulofenur, Sumoylation Inhibitor TAK-981, Sunitinib, Sunitinib Malate, Super Enhancer Inhibitor GZ17-6.02, Superagonist Interleukin-15:Interleukin-15 Receptor alphaSu/Fc Fusion Complex ALT-803, Superoxide Dismutase Mimetic GC4711, Suramin, Suramin Sodium, Survivin Antigen, Survivin Antigen Vaccine DPX-Survivac, Survivin mRNA Antagonist EZN-3042, Survivin-expressing CVD908ssb-TXSVN Vaccine, Sustained-release Lipid Inhaled Cisplatin, Sustained-release Mitomycin C Hydrogel Formulation UGN-101, Sustained-release Mitomycin C Hydrogel Formulation UGN-102, Syk Inhibitor HMPL-523, Synchrotope TA2M Plasmid DNA Vaccine, Synchrovax SEM Plasmid DNA Vaccine, Synthetic Alkaloid PM00104, Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2, Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1, Synthetic hTERT DNA Vaccine INO-1400, Synthetic hTERT DNA Vaccine INO-1401, Synthetic Hypericin, Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201, Synthetic Long E6/E7 Peptides Vaccine HPV-01, Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b, Synthetic Plumbagin PCUR-101, T900607, Tabalumab, Tabelecleucel, Tacedinaline, Tafasitamab, Tagraxofusp-erzs, Talabostat, Talabostat Mesylate, Talacotuzumab, Talactoferrin Alfa, Taladegib, Talampanel, Talaporfin Sodium, Talazoparib, Taletrectinib, Talimogene Laherparepvec, Tallimustine, Talmapimod, Talotrexin, Talotrexin Ammonium, Taltobulin, TAM/c-Met Inhibitor RXDX-106, Tamibarotene, Taminadenant, Tamoxifen, Tamoxifen Citrate, Tamrintamab Pamozirine, Tandutinib, Tanespimycin, Tanibirumab, Tankyrase Inhibitor STP1002, Tanomastat, Tapotoclax, Tarenflurbil, Tarextumab, Tariquidar, Tasadenoturev, Taselisib, Tasidotin, Tasisulam, Tasisulam Sodium, Tasquinimod, Taurolidine, Tauromustine, Taurultam, Taurultam Analogue GP-2250, Tavokinogene Telseplasmid, Tavolimab, Taxane Analogue TPI 287, Taxane Compound, Taxol Analogue SID 530, Tazarotene, Tazemetostat, Tebentafusp, Teclistamab, Tecogalan Sodium, Tefinostat, Tegafur, Tegafur-gimeracil-oteracil Potassium, Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation, Tegafur-Uracil, Tegavivint, Teglarinad, Teglarinad Chloride, Telaglenastat, Telaglenastat Hydrochloride, Telapristone, Telapristone Acetate, Telatinib Mesylate, Telisotuzumab, Telisotuzumab Vedotin, Telomerase Inhibitor FJ5002, Telomerase-specific Type 5 Adenovirus OBP-301, Teloxantrone, Teloxantrone Hydrochloride, Telratolimod, Temarotene, Temoporfin, Temozolomide, Temsirolimus, Tenalisib, Tenifatecan, Teniposide, Tepoditamab, Tepotinib, Teprotumumab, Terameprocol, Terfluranol, Tergenpumatucel-L, Teroxirone, Tertomotide, Tesetaxel, Tesevatinib, Tesidolumab, Testolactone, Testosterone Enanthate, Tetanus Toxoid Vaccine, Tetradecanoylphorbol Acetate, Tetrahydrouridine, Tetraphenyl Chlorin Disulfonate, Tetrathiomolybdate, Tezacitabine, Tezacitabine Anhydrous, TGF-beta Receptor 1 Inhibitor PF-06952229, TGF-beta Receptor 1 Kinase Inhibitor SH3051, TGF-beta Receptor 1 Kinase Inhibitor YL-13027, TGFa-PE38 Immunotoxin, TGFbeta Inhibitor LY3200882, TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200, Thalicarpine, Thalidomide, Theliatinib, Theramide, Therapeutic Angiotensin-(1-7), Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907, Therapeutic Cancer Vaccine ATP128, Therapeutic Estradiol, Therapeutic Hydrocortisone, Therapeutic Liver Cancer Peptide Vaccine IMA970A, Thiarabine, Thiodiglycol, Thioguanine, Thioguanine Anhydrous, Thioinosine, Thioredoxin-1 Inhibitor PX-12, Thiotepa, Thioureidobutyronitrile, THL-P, Thorium Th 227 Anetumab, Thorium Th 227 Anetumab Corixetan, Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439, Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497, Threonine Tyrosine Kinase Inhibitor CFI-402257, Thymidylate Synthase Inhibitor CX1106, Thymidylate Synthase Inhibitor DFP-11207, Thymopentin, Thyroid Extract, Tiazofurin, Tidutamab, Tigapotide, Tigatuzumab, TIGIT Inhibitor M6223, TIGIT-targeting Agent MK-7684, Tilarginine, Tilogotamab, Tilsotolimod Sodium, Timonacic, Tin Ethyl Etiopurpurin, Tinostamustine, Tinzaparin Sodium, Tiomolibdate Choline, Tiomolibdate Diammonium, Tipapkinogene Sovacivec, Tipifarnib, Tipiracil, Tipiracil Hydrochloride, Tirabrutinib, Tiragolumab, Tirapazamine, Tirbanibulin, Tisagenlecleucel, Tislelizumab, Tisotumab Vedotin, Tivantinib, Tivozanib, TLC ELL-12, TLR Agonist BDB001, TLR Agonist BSG-001, TLR Agonist CADI-05, TLR-Directed Cationic Lipid-DNA Complex JVRS-100, TLR7 Agonist 852A, TLR7 agonist BNT411, TLR7 Agonist LHC165, TLR7/8/9 Antagonist IMO-8400, TLR8 Agonist DN1508052, TLR9 Agonist AST-008, TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells, Tocilizumab, Tocladesine, Tocotrienol, Tocotrienol-rich Fraction, Tolebrutinib, Toll-like Receptor 7 Agonist DSP-0509, Tolnidamine, Tomaralimab, Tomato-Soy Juice, Tomivosertib, Topical Betulinic Acid, Topical Celecoxib, Topical Fluorouracil, Topical Gemcitabine Hydrochloride, Topical Potassium Dobesilate, Topical Trichloroacetic Acid, Topixantrone, Topoisomerase I Inhibitor Genz-644282, Topoisomerase I Inhibitor LMP400, Topoisomerase I Inhibitor LMP776, Topoisomerase I/II Inhibitor NEV-801, Topoisomerase-1 Inhibitor LMP744, Topoisomerase-II Inhibitor Racemic XK469, Topoisomerase-II-beta Inhibitor Racemic XK469, Topotecan, Topotecan Hydrochloride, Topotecan Hydrochloride Liposomes, Topotecan Sustained-release Episcleral Plaque, Topsalysin, TORC1/2 Kinase Inhibitor DS-3078a, Toremifene, Toremifene Citrate, Toripalimab, Tosedostat, Tositumomab, Total Androgen Blockade, Tovetumab, Tozasertib Lactate, TP40 Immunotoxin, Trabectedin, Trabedersen, TRAIL Receptor Agonist ABBV-621, Trametinib, Trametinib Dimethyl Sulfoxide, Trans Sodium Crocetinate, Transdermal 17beta-Estradiol Gel BHR-200, Transdermal 4-Hydroxytestosterone, Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01, Transferrin Receptor-Targeted Liposomal p53 cDNA, Transferrin-CRM107, Tranylcypromine Sulfate, Trapoxin, Trastuzumab, Trastuzumab Conjugate BI-CON-02, Trastuzumab Deruxtecan, Trastuzumab Duocarmazine, Trastuzumab Emtansine, Trastuzumab Monomethyl Auristatin F, Trastuzumab-TLR 7/8 Agonist BDC-1001, Trastuzumab/Hyaluronidase-oysk, Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502, Trebananib, Tremelimumab, Treosulfan, Tretazicar, Tretinoin, Tretinoin Liposome, Triamcinolone Acetonide, Triamcinolone Hexacetonide, Triapine, Triazene Derivative CB10-277, Triazene Derivative TriN2755, Triazinate, Triaziquone, Tributyrin, Triciribine Phosphate, Trientine Hydrochloride, Triethylenemelamine, Trifluridine, Trifluridine and Tipiracil Hydrochloride, Trigriluzole, Trilaciclib, Trimelamol, Trimeric GITRL-Fc OMP-336B11, Trimethylcolchicinic Acid, Trimetrexate, Trimetrexate Glucuronate, Trioxifene, Triplatin Tetranitrate, Triptolide Analog, Triptorelin, Triptorelin Pamoate, Tris-acryl Gelatin Microspheres, Tritylcysteine, TRK Inhibitor AZD6918, TRK Inhibitor TQB3558, TrkA Inhibitor VMD-928, Trodusquemine, Trofosfamide, Troglitazone, Tropomyosin Receptor Kinase Inhibitor AZD7451, Troriluzole, Troxacitabine, Troxacitabine Nucleotide Prodrug MIV-818, TRPM8 Agonist D-3263, TRPV6 Calcium Channel Inhibitor SOR-C13, TSP-1 Mimetic ABT-510, TSP-1 Mimetic Fusion Protein CVX-045, Tubercidin, Tubulin Binding Agent TTI-237, Tubulin Inhibitor ALB 109564 Dihydrochloride, Tubulin Inhibitor ALB-109564, Tubulin Polymerization Inhibitor AEZS 112, Tubulin Polymerization Inhibitor CKD-516, Tubulin Polymerization Inhibitor VERU-111, Tubulin-Binding Agent SSR97225, Tucatinib, Tucidinostat, Tucotuzumab Celmoleukin, Tyroserleutide, Tyrosinase Peptide, Tyrosinase-KLH, Tyrosinase:146-156 Peptide, Tyrosine Kinase Inhibitor, Tyrosine Kinase Inhibitor OSI-930, Tyrosine Kinase Inhibitor SU5402, Tyrosine Kinase Inhibitor TL-895, Tyrosine Kinase Inhibitor XL228, UAE Inhibitor TAK-243, Ubenimex, Ubidecarenone Nanodispersion BPM31510n, Ublituximab, Ulinastatin, Ulixertinib, Ulocuplumab, Umbralisib, Uncaria tomentosa Extract, Upamostat, Upifitamab, Uproleselan, Uprosertib, Urabrelimab, Uracil Ointment, Urelumab, Uroacitides, Urokinase-Derived Peptide A6, Ursolic Acid, USP14/UCHL5 Inhibitor VLX1570, Utomilumab, Uzansertib, V930 Vaccine, Vaccine-Sensitized Draining Lymph Node Cells, Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules, Vactosertib, Vadacabtagene Leraleucel, Vadastuximab Talirine, Vadimezan, Valecobulin, Valemetostat, Valproic Acid, Valrubicin, Valspodar, Vandetanib, Vandetanib-eluting Radiopaque Bead BTG-002814, Vandortuzumab Vedotin, Vantictumab, Vanucizumab, Vapreotide, Varlilumab, Varlitinib, Varlitinib Tosylate, Vascular Disrupting Agent BNC105, Vascular Disrupting Agent BNC105P, Vascular Disrupting Agent ZD6126, Vatalanib, Vatalanib Succinate, Vecabrutinib, Vector-peptide Conjugated Paclitaxel, Vedolizumab, VEGF Inhibitor PTC299, VEGF/HGF-targeting DARPin MP0250, VEGFR Inhibitor KRN951, VEGFR-2 DNA Vaccine VXM01, VEGFR/FGFR Inhibitor ODM-203, VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593, VEGFR2 Tyrosine Kinase Inhibitor PF-00337210, VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813, Veliparib, Veltuzumab, Vemurafenib, Venetoclax, Verapamil, Verpasep Caltespen, Verubulin, Verubulin Hydrochloride, Vesencumab, Vesigenurtucel-L, VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220, VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820, Viagenpumatucel-L, Vibecotamab, Vibostolimab, Vilaprisan, Vinblastine, Vinblastine Sulfate, Vincristine, Vincristine Liposomal, Vincristine Sulfate, Vincristine Sulfate Liposome, Vindesine, Vinepidine, Vinflunine, Vinflunine Ditartrate, Vinfosiltine, Vinorelbine, Vinorelbine Tartrate, Vinorelbine Tartrate Emulsion, Vinorelbine Tartrate Oral, Vintafolide, Vinzolidine, Vinzolidine Sulfate, Virulizin, Vismodegib, Vistusertib, Vitamin D3 Analogue ILX23-7553, Vitamin E Compound, Vitespen, VLP-encapsulated TLR9 Agonist CMP-001, Vocimagene Amiretrorepvec, Vofatamab, Volasertib, Volociximab, Vonlerolizumab, Vopratelimab, Vorasidenib, Vorinostat, Vorolanib, Vorsetzumab Mafodotin, Vosaroxin, Vosilasarm, Voxtalisib, Vulinacimab, Warfarin Sodium, Wee1 Inhibitor ZN-c3, Wee1 Kinase Inhibitor Debio 0123, White Carrot, Wnt Signaling Inhibitor SM04755, Wnt Signaling Pathway Inhibitor SM08502, Wnt-5a Mimic Hexapeptide Foxy-5, Wobe-Mugos E, WT1 Peptide Vaccine OCV-501, WT1 Peptide Vaccine WT2725, WT1 Protein-derived Peptide Vaccine DSP-7888, WT1-A10/AS01B Immunotherapeutic GSK2130579A, WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401, Xanthohumol, XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410, Xeloda, Xentuzumab, Xevinapant, Xiaoai Jiedu Decoction, XIAP Antisense Oligonucleotide AEG35156, XIAP/cIAP1 Antagonist ASTX660, Xiliertinib, Xisomab 3G3, XPO1 Inhibitor SL-801, Y 90 Monoclonal Antibody CC49, Y 90 Monoclonal Antibody HMFG1, Y 90 Monoclonal Antibody Lym-1, Y 90 Monoclonal Antibody m170, Y 90 Monoclonal Antibody M195, Yang Yin Fu Zheng, Yangzheng Xiaoji Extract, Yiqi-yangyin-jiedu Herbal Decoction, Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8, Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101, Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66, Yttrium Y 90 Basiliximab, Yttrium Y 90 Colloid, Yttrium Y 90 Daclizumab, Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A, Yttrium Y 90 Glass Microspheres, Yttrium Y 90 Monoclonal Antibody B3, Yttrium Y 90 Monoclonal Antibody BrE-3, Yttrium Y 90 Monoclonal Antibody Hu3S193, Yttrium Y 90 Monoclonal Antibody MN-14, Yttrium Y 90 Resin Microspheres, Yttrium Y 90 Tabituximab Barzuxetan, Yttrium Y 90-DOTA-Biotin, Yttrium Y 90-DOTA-di-HSG Peptide IMP-288, Yttrium Y 90-Edotreotide, Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101, Yttrium Y-90 Clivatuzumab Tetraxetan, Yttrium Y-90 Epratuzumab Tetraxetan, Yttrium Y-90 Ibritumomab Tiuxetan, Yttrium Y-90 Tacatuzumab Tetraxetan, Yttrium-90 Polycarbonate Brachytherapy Plaque, Z-Endoxifen Hydrochloride, Zalcitabine, Zalifrelimab, Zalutumumab, Zandelisib, Zanidatamab, Zanolimumab, Zanubrutinib, Zebularine, Zelavespib, Zibotentan, Zinc Finger Nuclease ZFN-603, Zinc Finger Nuclease ZFN-758, Zinostatin, 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8390/3, 8391/0, 8392/0, 8400/0, 8400/1, 8400/3, 8401/0, 8401/3, 8402/0, 8402/3, 8403/0, 8403/3, 8404/0, 8405/0, 8406/0, 8407/0, 8407/3, 8408/0, 8408/1, 8408/3, 8409/0, 8409/3, 8410/0, 8410/3, 8413/3, 8420/0, 8420/3, 8430/1, 8430/3, 8440/0, 8440/3, 8441/0, 8441/2, 8441/3, 8441/6, 8442/1, 8443/0, 8444/1, 8450/0, 8450/3, 8451/1, 8452/1, 8452/3, 8453/0, 8453/2, 8453/3, 8454/0, 8460/0, 8460/2, 8460/3, 8461/0, 8461/3, 8461/6, 8462/1, 8463/1, 8470/0, 8470/2, 8470/3, 8471/0, 8471/1, 8471/3, 8472/1, 8473/1, 8474/1, 8474/3, 8480/0, 8480/1, 8480/3, 8480/6, 8481/3, 8482/3, 8482/6, 8490/3, 8490/6, 8500/2, 8500/3, 8500/6, 8501/2, 8501/3, 8502/3, 8503/0, 8503/2, 8503/3, 8504/0, 8504/2, 8504/3, 8505/0, 8506/0, 8507/2, 8507/3, 8508/3, 8509/2, 8509/3, 8510/3, 8512/3, 8513/3, 8514/3, 8519/2, 8520/2, 8520/3, 8521/1, 8521/3, 8522/1, 8522/2, 8522/3, 8522/6, 8523/3, 8524/3, 8525/3, 8530/3, 8540/3, 8541/3, 8542/3, 8543/3, 8550/0, 8550/1, 8550/3, 8551/3, 8552/3, 8560/0, 8560/3, 8561/0, 8562/3, 8570/3, 8571/3, 8572/3, 8573/3, 8574/3, 8575/3, 8576/3, 8580/0, 8580/1, 8580/3, 8581/1, 8581/3, 8582/1, 8582/3, 8583/1, 8583/3, 8584/1, 8584/3, 8585/1, 8585/3, 8586/3, 8587/0, 8588/3, 8589/3, 8590/1, 8591/1, 8592/1, 8593/1, 8594/1, 8600/0, 8600/3, 8601/0, 8602/0, 8610/0, 8620/1, 8620/3, 8621/1, 8622/1, 8623/1, 8630/0, 8630/1, 8630/3, 8631/0, 8631/1, 8631/3, 8632/1, 8633/1, 8634/1, 8634/3, 8640/1, 8640/3, 8641/0, 8642/1, 8650/0, 8650/1, 8650/3, 8660/0, 8670/0, 8670/3, 8671/0, 8680/0, 8680/1, 8680/3, 8681/1, 8682/1, 8683/0, 8690/1, 8691/1, 8692/1, 8693/1, 8693/3, 8700/0, 8700/3, 8710/3, 8711/0, 8711/3, 8712/0, 8713/0, 8714/3, 8720/0, 8720/2, 8720/3, 8720/6, 8721/3, 8722/0, 8722/3, 8723/0, 8723/3, 8725/0, 8726/0, 8727/0, 8728/0, 8728/1, 8728/3, 8730/0, 8730/3, 8740/0, 8740/3, 8741/2, 8741/3, 8742/2, 8742/3, 8743/3, 8744/3, 8745/3, 8746/3, 8750/0, 8760/0, 8761/0, 8761/1, 8761/3, 8762/1, 8770/0, 8770/3, 8771/0, 8771/3, 8772/0, 8772/3, 8773/3, 8774/3, 8780/0, 8780/3, 8790/0, 8800/0, 8800/3, 8800/6, 8800/9, 8801/3, 8801/6, 8802/3, 8803/3, 8804/3, 8804/6, 8805/3, 8806/3, 8806/6, 8810/0, 8810/1, 8810/3, 8811/0, 8811/1, 8811/3, 8812/0, 8812/3, 8813/0, 8813/3, 8814/3, 8815/0, 8815/1, 8815/3, 8820/0, 8821/1, 8822/1, 8823/0, 8824/0, 8824/1, 8825/0, 8825/1, 8825/3, 8826/0, 8827/1, 8830/0, 8830/1, 8830/3, 8831/0, 8832/0, 8832/3, 8833/3, 8834/1, 8835/1, 8836/1, 8840/0, 8840/3, 8841/1, 8842/0, 8842/3, 8850/0, 8850/1, 8850/3, 8851/0, 8851/3, 8852/0, 8852/3, 8853/3, 8854/0, 8854/3, 8855/3, 8856/0, 8857/0, 8857/3, 8858/3, 8860/0, 8861/0, 8862/0, 8870/0, 8880/0, 8881/0, 8890/0, 8890/1, 8890/3, 8891/0, 8891/3, 8892/0, 8893/0, 8894/0, 8894/3, 8895/0, 8895/3, 8896/3, 8897/1, 8898/1, 8900/0, 8900/3, 8901/3, 8902/3, 8903/0, 8904/0, 8905/0, 8910/3, 8912/3, 8920/3, 8920/6, 8921/3, 8930/0, 8930/3, 8931/3, 8932/0, 8933/3, 8934/3, 8935/0, 8935/1, 8935/3, 8936/0, 8936/1, 8936/3, 8940/0, 8940/3, 8941/3, 8950/3, 8950/6, 8951/3, 8959/0, 8959/1, 8959/3, 8960/1, 8960/3, 8963/3, 8964/3, 8965/0, 8966/0, 8967/0, 8970/3, 8971/3, 8972/3, 8973/3, 8974/1, 8975/1, 8980/3, 8981/3, 8982/0, 8982/3, 8983/0, 8983/3, 8990/0, 8990/1, 8990/3, 8991/3, 9000/0, 9000/1, 9000/3, 9010/0, 9011/0, 9012/0, 9013/0, 9014/0, 9014/1, 9014/3, 9015/0, 9015/1, 9015/3, 9016/0, 9020/0, 9020/1, 9020/3, 9030/0, 9040/0, 9040/3, 9041/3, 9042/3, 9043/3, 9044/3, 9045/3, 9050/0, 9050/3, 9051/0, 9051/3, 9052/0, 9052/3, 9053/3, 9054/0, 9055/0, 9055/1, 9060/3, 9061/3, 9062/3, 9063/3, 9064/2, 9064/3, 9065/3, 9070/3, 9071/3, 9072/3, 9073/1, 9080/0, 9080/1, 9080/3, 9081/3, 9082/3, 9083/3, 9084/0, 9084/3, 9085/3, 9086/3, 9090/0, 9090/3, 9091/1, 9100/0, 9100/1, 9100/3, 9101/3, 9102/3, 9103/0, 9104/1, 9105/3, 9110/0, 9110/1, 9110/3, 9120/0, 9120/3, 9121/0, 9122/0, 9123/0, 9124/3, 9125/0, 9130/0, 9130/1, 9130/3, 9131/0, 9132/0, 9133/1, 9133/3, 9135/1, 9136/1, 9137/3, 9140/3, 9141/0, 9142/0, 9150/0, 9150/1, 9150/3, 9160/0, 9161/0, 9161/1, 9170/0, 9170/3, 9171/0, 9172/0, 9173/0, 9174/0, 9174/1, 9175/0, 9180/0, 9180/3, 9180/6, 9181/3, 9182/3, 9183/3, 9184/3, 9185/3, 9186/3, 9187/3, 9191/0, 9192/3, 9193/3, 9194/3, 9195/3, 9200/0, 9200/1, 9210/0, 9210/1, 9220/0, 9220/1, 9220/3, 9221/0, 9221/3, 9230/0, 9230/3, 9231/3, 9240/3, 9241/0, 9242/3, 9243/3, 9250/1, 9250/3, 9251/1, 9251/3, 9252/0, 9252/3, 9260/3, 9261/3, 9262/0, 9270/0, 9270/1, 9270/3, 9271/0, 9272/0, 9273/0, 9274/0, 9275/0, 9280/0, 9281/0, 9282/0, 9290/0, 9290/3, 9300/0, 9301/0, 9302/0, 9302/3, 9310/0, 9310/3, 9311/0, 9312/0, 9320/0, 9321/0, 9322/0, 9330/0, 9330/3, 9340/0, 9341/1, 9341/3, 9342/3, 9350/1, 9351/1, 9352/1, 9360/1, 9361/1, 9362/3, 9363/0, 9364/3, 9365/3, 9370/3, 9371/3, 9372/3, 9373/0, 9380/3, 9381/3, 9382/3, 9383/1, 9384/1, 9385/3, 9390/0, 9390/1, 9390/3, 9391/3, 9392/3, 9393/3, 9394/1, 9395/3, 9396/3, 9400/3, 9401/3, 9410/3, 9411/3, 9412/1, 9413/0, 9420/3, 9421/1, 9423/3, 9424/3, 9425/3, 9430/3, 9431/1, 9432/1, 9440/3, 9440/6, 9441/3, 9442/1, 9442/3, 9444/1, 9445/3, 9450/3, 9451/3, 9460/3, 9470/3, 9471/3, 9472/3, 9473/3, 9474/3, 9475/3, 9476/3, 9477/3, 9478/3, 9480/3, 9490/0, 9490/3, 9491/0, 9492/0, 9493/0, 9500/3, 9501/0, 9501/3, 9502/0, 9502/3, 9503/3, 9504/3, 9505/1, 9505/3, 9506/1, 9507/0, 9508/3, 9509/1, 9510/0, 9510/3, 9511/3, 9512/3, 9513/3, 9514/1, 9520/3, 9521/3, 9522/3, 9523/3, 9530/0, 9530/1, 9530/3, 9531/0, 9532/0, 9533/0, 9534/0, 9535/0, 9537/0, 9538/1, 9538/3, 9539/1, 9539/3, 9540/0, 9540/1, 9540/3, 9541/0, 9542/3, 9550/0, 9560/0, 9560/1, 9560/3, 9561/3, 9562/0, 9570/0, 9571/0, 9571/3, 9580/0, 9580/3, 9581/3, 9582/0, 9590/3, 9591/3, 9596/3, 9597/3, 9650/3, 9651/3, 9652/3, 9653/3, 9654/3, 9655/3, 9659/3, 9661/3, 9662/3, 9663/3, 9664/3, 9665/3, 9667/3, 9670/3, 9671/3, 9673/3, 9675/3, 9678/3, 9679/3, 9680/3, 9684/3, 9687/3, 9688/3, 9689/3, 9690/3, 9691/3, 9695/3, 9698/3, 9699/3, 9700/3, 9701/3, 9702/3, 9705/3, 9708/3, 9709/3, 9712/3, 9714/3, 9716/3, 9717/3, 9718/3, 9719/3, 9724/3, 9725/3, 9726/3, 9727/3, 9728/3, 9729/3, 9731/3, 9732/3, 9733/3, 9734/3, 9735/3, 9737/3, 9738/3, 9740/1, 9740/3, 9741/1, 9741/3, 9742/3, 9750/3, 9751/1, 9751/3, 9752/1, 9753/1, 9754/3, 9755/3, 9756/3, 9757/3, 9758/3, 9759/3, 9760/3, 9761/3, 9762/3, 9764/3, 9765/1, 9766/1, 9767/1, 9768/1, 9769/1, 9800/3, 9801/3, 9805/3, 9806/3, 9807/3, 9808/3, 9809/3, 9811/3, 9812/3, 9813/3, 9814/3, 9815/3, 9816/3, 9817/3, 9818/3, 9820/3, 9823/3, 9826/3, 9827/3, 9831/3, 9832/3, 9833/3, 9834/3, 9835/3, 9836/3, 9837/3, 9840/3, 9860/3, 9861/3, 9863/3, 9865/3, 9866/3, 9867/3, 9869/3, 9870/3, 9871/3, 9872/3, 9873/3, 9874/3, 9875/3, 9876/3, 9891/3, 9895/3, 9896/3, 9897/3, 9898/1, 9898/3, 9910/3, 9911/3, 9920/3, 9930/3, 9931/3, 9940/3, 9945/3, 9946/3, 9948/3, 9950/3, 9960/3, 9961/3, 9962/3, 9963/3, 9964/3, 9965/3, 9966/3, 9967/3, 9970/1, 9971/1, 9971/3, 9975/3, 9980/3, 9982/3, 9983/3, 9984/3, 9985/3, 9986/3, 9987/3, 9989/3, 9991/3, 9992/3, Unknown, Not Reported",,FALSE,,,,CDS/participant, -Biospecimen Fixative,The name of the compound that preserves tissues and cells in this sample for microscopic study.,"Acetone, Alcohol, Formalin, Glutaraldehyde, OCT media, RNAlater, Saline, 95% Ethanol, NP40 Lysis Buffer, Not recorded, Diimidoester, Carbodiimide, Dimethylacetamide, Para-benzoquinone, PAXgene Tissue, TCL Lysis Buffer, Not applicable, Methacarn, CryoStor, Carnoy's Solution, Poloxamer, Other, None, Unknown",,TRUE,,,,CDS/NDpathology, -Biospecimen Embedding Medium,The name of the material that infiltrates and supports the specimen and preserves its shape and structure for sectioning and microscopy.,"Paraffin wax, Carbowax, Methacrylate, Epoxy Resin (Araldite), Agar embedding, Celloidin media, Gelatin, Other, None, Unknown",,TRUE,,,,CDS/NDpathology, -Biospecimen Acquisition Method,Records the method of acquisition or source for the specimen under consideration,"Autopsy, Biopsy, Blood draw, Core needle biopsy, Excisional Biopsy, Fine needle aspirate, Forceps Biopsy, Incisional Biopsy, Lymphadenectomy (regional nodes), Not applicable, Not reported, Not specified, Other, Pancreaticoduodenectomy, Punch biopsy, Re-excision, Sentinel node biopsy, Shave biopsy, Surgical Resection, Unknown",,FALSE,,,,CDS/NDpathology, -Biospecimen Description,A description of the biospecimen.,,,FALSE,,,,CDS/NDpathology, -Biospecimen Pathology,The pathology identifier associated with the biospecimen.,"Metastatic Neoplasm, Not Applicable, Not Otherwise Specified, Not Reported, Premalignant Neoplasm, Primary Neoplasm, Recurrent Neoplasm, Unknown, Xenograft",,FALSE,,,,CDS/NDpathology, -Biospecimen BioSample Identifier,BioSample (SAMN) accession number corresponding to the source of this biospecimen.,,,FALSE,,,,CDS/NDpathology, -Parent Biospecimen Key,Biospecimen Key identifer of a biospecimen from which this sample was derived. Do not use this field to reference the source model or individual.,,,FALSE,,,,CDS/NDpathology, -Biospecimen Stain,"Any of the various methods that use a dye, reagent, or other material for producing coloration in tissues or microorganisms for microscopic examination.",,,TRUE,,,,CDS/NDpathology, -Biospecimen Timepoint Offset,"The number of days that elapsed before the biospecimen was collected, relative to the event described by Biospecimen Timepoint Type. Floating point values are allowed.",,,FALSE,,,,CDS/file,num -Biospecimen Last Known Disease Status,Text term that describes the last known status of an individual associated with this specimen.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS/participant, -Biospecimen Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the malignant disease of the individual or model.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,MC2/STE, -Biospecimen Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, -Biospecimen Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, -Biospecimen Treatment Response,Text term that describes the treatment response of a model or patient from which this specimen was derived.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, -Biospecimen Incidence Type,Text term describing a change in disease status associated with the collection of this specimen. ,"Primary, Progression, Recurrence, Metastasis, Remission, No Disease",,FALSE,,,,CDS v5.0.4/Diagnosis, -Collection,The set of metadata entries associated with a Study. A collection defines which resources should be grouped for sharing and reuse.,,"Component, Collection_id, GrantView Key, Study Key, PublicationView Key, DatasetView Key, ToolView Key, EducationalResource Key, Biospecimen Table Id, Model Table Id, Individual Table Id, Imaging Channel Table Id, GeoMx ROI Table Id",FALSE,,,,, -Collection_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Biospecimen Table Id,The Synapse Id corresponding to a Biospecimen metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" -Model Table Id,The Synapse Id corresponding to a Model metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" -Individual Table Id,The Synapse Id corresponding to a Individual metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" -Imaging Channel Table Id,The Synapse Id corresponding to a Imaging Channel metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" -GeoMx ROI Table Id,The Synapse Id corresponding to a GeoMx ROI/Segment Annotations metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" -Consortium,Consortium information,,"Component, Consortium_id, Consortium Name, Consortium Display Name, Consortium Full Name, Consortium Description, Consortium Funding Agency, Website",FALSE,,,,, -Consortium Name,"Machine readable name of the research consortium. (e.g. sage_bionetworks, csbc_pson, etc.)",,,TRUE,,,,, -Consortium Display Name,"Human readable display name of research consortium (e.g. Sage Bionetworks, CSBC, PS-ON, etc.)",,,TRUE,,,,, -Consortium Full Name,Full name of research consortium. (e.g. Cancer Systems Biology Consortium).,,,TRUE,,,,, -Consortium Description,Description of research consortium,,,TRUE,,,,, -Consortium Funding Agency,Funding agency of research consortium ,NIH,,TRUE,,,,, -Website,Website of research consortium,,,TRUE,,,,,url -Consortium_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Dataset Name,Name of the dataset,,,TRUE,,,,, -Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique -Dataset Description,Description of the dataset.,,,FALSE,,,,, -Dataset Design,The overall design of the dataset.,,,FALSE,,,,, -Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url -Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like -Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like -Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like -Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, ToolView Key, Resource Title, Resource Link, Resource Doi, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",FALSE,,,Grant View,, -Resource Title,Title of the item.,,,TRUE,,,,OER,str -Resource Link,The URL that links to the item.,,,TRUE,,,,OER,url -Resource Doi,The Digital Object Identifier (DOI) associated with the educational resource.,,,TRUE,,,,MC2,url -Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,TRUE,,,,OER,list like -Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,TRUE,,,,OER,list like -Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,TRUE,,,,OER,list like -Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,TRUE,,,,OER,list like -Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,TRUE,,,,OER,list like -Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,TRUE,,,,OER,list like -Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str -Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like -Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like::regex search [a-z]{2} -Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like -Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like -Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like -Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str -Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,FALSE,,,,OER,unique -Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,list like -Resource Media Accessibility,"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.","Alternative Text, Audio Description, Braille, Captions, ChemML, Described Math, Display Transformability, Haptic, High Contrast, Large Print, Latex, Long Description, MathML, Nemeth Braille, Sign Language, Structural Navigation, Tactile Graphics, Text Transcript",,FALSE,,,,OER,list like -Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,FALSE,,,,OER,list like -Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/dataset,list like -Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/tool,list like -EducationalResource_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -File Description,Description of the file.,,,FALSE,,,,,str -File Design,The overall design of the dataset or file.,,,FALSE,,,,,str -File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, -File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, -File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, -File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like -File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like -File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, -File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, -FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str -File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int -File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str -File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num -File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num -File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, -File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique -File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like -NanoString GeoMx Auxiliary Files,Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.,,"Component, NanoStringGeoMxAuxiliaryFiles_id, Synapse ID of GeoMx DSP ROI Segment Annotation File, Synapse ID of GeoMx DSP PKC File, Synapse ID of GeoMx Lab Worksheet File, Synapse ID of GeoMx DSP Config File",FALSE,,,,MC2/STE, -NanoStringGeoMxAuxiliaryFiles_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2/STE,unique -Synapse ID of GeoMx Lab Worksheet File,Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.,,,FALSE,,,,HTAN,list like::regex match syn\d+ -Synapse ID of GeoMx DSP PKC File,The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.,,,FALSE,,,,HTAN,list like::regex match syn\d+ -Synapse ID of GeoMx DSP ROI Segment Annotation File,Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.,,,FALSE,,,,HTAN,list like::regex match syn\d+ -Synapse ID of GeoMx DSP Config File,Synapse ID of config.ini file generated by the GeoMx DSP workflow.,,,FALSE,,,,MC2/STE,list like::regex match syn\d+ -NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, -NanoStringGeoMxDSPImaging_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -GeoMx Imaging Channel Names,Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,HTAN,list like -GeoMx Imaging AOI Coordinates,Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,MC2/STE,list like -NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, -NanoStringGeoMxDSPLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -GeoMx DSP Assay Type,The assay type which was used for the GeoMx DSP pipeline.,"RNA nCounter, Protein nCounter, Protein NGS, RNA NGS",,FALSE,,,,HTAN, -NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, -NanoStringGeoMxDSPLevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, -NanoStringGeoMxDSPLevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw reads, NGS Stitched reads, NGS Aligned reads, NGS Deduplicated reads, NGS Trimmed reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", -NanoStringGeoMXROISegmentAnnotation_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -GeoMx Scan name,GeoMx Scan name (as appears in Segment Summary),,,TRUE,,,,HTAN,str -GeoMx ROI Name,Name of Region of Interest corresponding to file. Multiple names should be comma-separated,,,TRUE,,,,HTAN,list like -GeoMx AOI Name,Name of Area of Illumination corresponding to file. Multiple names should be comma-separated,,,TRUE,,,,HTAN,list like -GeoMx ROI X Coordinate,Region of Interest X location within the image,,,FALSE,,,,HTAN,num -GeoMx ROI Y Coordinate,Region of Interest Y location within the image,,,FALSE,,,,HTAN,num -GeoMx AOI X Coordinate,Area of Illumination X location within the image,,,FALSE,,,,MC2/STE,num -GeoMx AOI Y Coordinate,Area of Illumination Y location within the image,,,FALSE,,,,MC2/STE,num -GeoMx QC status,ROI quality control flag as reported by the application,,,FALSE,,,,HTAN,list like -GeoMx Scan Height,Height of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num -GeoMx Scan Width,Width of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num -GeoMx Scan Offset X,Offset X of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num -GeoMx Scan Offset Y,Offset Y of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num -GeoMx Binding Density,The binding density as reported by the application,,,FALSE,,,,HTAN,num -GeoMx Positive norm factor,The Positive Control Normalization factor calculated using pos-hyb controls,,,FALSE,,,,HTAN,num -GeoMx Surface area,Surface area of the ROI in square microns (Β΅m2),,,FALSE,,,,HTAN,num -GeoMx Nuclei count,Number of nuclei detected in the segment (if applicable),,,FALSE,,,,HTAN,num -GeoMx Slide name,"Similar to a Run ID, the slide name indicates the slide a given ROI is linked to (as reported in Segment Summary).",,,FALSE,,,,HTAN,str -GeoMx In Situ Negative median,Is the median of all negative control probes for a given segment. A measure of signal to background for each segment.,,,FALSE,,,,HTAN,num -GeoMx Biological probe median,Is the median count from all probes except the negative control probes. A measure of signal to background for each segment,,,FALSE,,,,HTAN,num -GeoMx Negative count mean,The geometric mean of the unique negative probes in a GeoMx panel that do not target mRNA and establish the background count level per segment,,,FALSE,,,,STE,num -GeoMx No Template Control count,The number of reads detected by the GeoMx probe panel in the control associated with this ROI.,,,FALSE,,,,STE,num -GeoMx Excluded Outlier Probes,The list of probes excluded from analysis.,,,FALSE,,,,STE,num -GeoMx Limit of Quantification,The calculated limit of quantification associated with the segment.,,,FALSE,,,,STE,num -GeoMx Sequencing Saturation,"The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. More specifically, this is the fraction of confidently mapped, valid spot-barcode, valid UMI reads that had a non-unique (spot-barcode, UMI, gene).",,,FALSE,,,,HTAN,num -Grant Name,Name of the grant,,,TRUE,,,,, -Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ -Grant Abstract,Abstract for the grant,,,TRUE,,,,, -Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, -Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, -Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Albert Einstein College of Medicine, Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beckman Research Institute of City of Hope, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Clemson University, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Purdue University, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of Arkansas at Fayetteville, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"AECM, ASU, AU, BCM, BIDMC, BMC, BRI, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Clemson, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Purdue, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UARK, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like -Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like -Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, -GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,FALSE,,,,,url -Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,FALSE,,,,,url -Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date -NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url -Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int -Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date -Imaging Channel,Channel-level Metadata Attributes,,"Component, ImagingChannel_id, Study Key, Channel Identifier, Channel Name, Channel Passed QC, Channel Cycle Number, Channel Sub-cycle Number, Channel Antibody Role, Channel Target Name, Channel Antibody Name, Channel Resource ID, Channel Fluorophore, Channel Antibody Clone, Channel Antibody Lot, Channel Antibody Vendor, Channel Antibody Catalog Number, Channel Excitation Wavelength, Channel Emission Wavelength, Channel Excitation Bandwidth, Channel Emission Bandwidth, Channel Metal Symbol, Channel Metal Isotope, Channel Oligo Barcode Upper Strand, Channel Oligo Barcode Lower Strand, Channel Probe Dilution Ratio, Channel Probe Concentration",FALSE,,,,HTAN, -ImagingChannel_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, -Channel Identifier,This must match the corresponding field in the OME-XML / TIFF header. (eg 'Channel:0:1'),,,TRUE,,,,HTAN, -Channel Name,This must match the corresponding field in the OME-XML / TIFF header. (eg 'Blue' or 'CD45' or 'E-cadherin'),,,TRUE,,,,HTAN, -Channel Passed QC,Identify stains that did not pass QC but are included in the dataset.,"Yes, No - Channel Failed QC",,FALSE,,,,HTAN, -Channel Cycle Number,The cycle # in which the co-listed reagent(s) was(were) used. Integer >= 1 (up to number of cycles),,,FALSE,,,,HTAN, -Channel Sub-cycle Number,Sub cycle number,,,FALSE,,,,HTAN, -Channel Antibody Role,Is this antibody acting as a primary or secondary antibody?,"Primary, Secondary",,FALSE,,,,HTAN, -Channel Target Name,Short descriptive name (abbreviation) for this target (antigen),,,TRUE,,,,HTAN, -Channel Antibody Name,"Antibody Name (free text (eg β€œKeratin”, β€œCD163”, β€œDNA”))",,,FALSE,,,,HTAN, -Channel Resource ID,Research Resource Identifier (eg β€œRRID: AB_394606”),,,FALSE,,,,HTAN, -Channel Fluorophore,Fluorescent dye label (eg Alexa Fluor 488),,,FALSE,,,,HTAN, -Channel Antibody Clone,Clone,,,FALSE,,,,HTAN, -Channel Antibody Lot,Lot number from vendor,,,FALSE,,,,HTAN, -Channel Antibody Vendor,Vendor,,,FALSE,,,,HTAN, -Channel Antibody Catalog Number,Catalog Number,,,FALSE,,,,HTAN, -Channel Excitation Wavelength,Center/peak of the excitation spectrum (nm),,,FALSE,,,,HTAN, -Channel Emission Wavelength,Center/peak of the emission spectrum (nm),,,FALSE,,,,HTAN, -Channel Excitation Bandwidth,Nominal width of excitation spectrum (nm),,,FALSE,,,,HTAN, -Channel Emission Bandwidth,Nominal width of emission spectrum (nm),,,FALSE,,,,HTAN, -Channel Metal Symbol,Element abbreviation. eg β€œLa” or β€œNd”,"H, He, Li, Be, B, C, N, O, F, Ne, Na, Mg, Al, Si, P, S, Cl, Ar, K, Ca, Sc, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Ga, Ge, As, Se, Br, Kr, Rb, Sr, Y, Zr, Nb, Mo, Tc, Ru, Rh, Pd, Ag, Cd, In, Sn, Sb, Te, I, Xe, Cs, Ba, La, Ce, Pr, Nd, Pm, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, Lu, Hf, Ta, W, Re, Os, Ir, Pt, Au, Hg, Tl, Pb, Bi, Po, At, Rn, Fr, Ra, Ac, Th, Pa, U, Np, Pu, Am, Bk, Cf, Es, Fm, Md, No, Lr, Rf, Db, Sg, Bh, Hs, Mt, Ds, Rg, Cn, Nh, Fl, Mc, Lv, Ts, Og",,FALSE,,,,HTAN, -Channel Metal Isotope,Element mass number,,,FALSE,,,,HTAN, -Channel Oligo Barcode Upper Strand,Oligo Barcode - Upper Strand,,,FALSE,,,,HTAN, -Channel Oligo Barcode Lower Strand,Oligo Barcode - Lower Strand,,,FALSE,,,,HTAN, -Channel Probe Dilution Ratio,Dilution (eg 1:1000),,,FALSE,,,,HTAN, -Channel Probe Concentration,Concentration (eg 10ug/mL),,,FALSE,,,,HTAN, -Imaging Level 1,Raw imaging data,,"Component, ImagingLevel1_id, Filename, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, ImagingChannel Key",FALSE,,,File View,HTAN, -ImagingLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,Mc2, -Image Assay Type,Type of imaging assay,"CODEX, CyCIF, ExSeq, GeoMX-DSP, H&E, IHC, IMC, MERFISH, MIBI, mIHC, MxIF, Not Applicable, SABER, t-CyCIF",,TRUE,,,,HTAN, -Image Protocol Link,"Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.",,,FALSE,,,,HTAN, -Image Platform Model,The specific model of the instrument used to carry out an imaging experiment.,,,FALSE,,,,HTAN, -Image Platform Manufacturer,Producer of the imaging equipment that was used to generate the digital image,,,FALSE,,,,CDS/imaging, -Image Software,"The name of the software package that was used to capture, generate, and process the image.",,,FALSE,,,,CDS/imaging, -Imaging Level 2,Raw and pre-processed image data,,"Component, ImagingLevel2_id, Filename, ImagingLevel1 Key, ImagingChannel Key, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, Image Objective, Image Nominal Magnification, Image Lense Aperture, Image Working Distance, Image Working Distance Unit, Image Immersion Type, Image Pyramidal, Image Z stack, Image Timeseries, Image FOV Index, Image FOV Size X, Image FOV Size X Unit, Image FOV Size Y, Image FOV Size Y Unit, Image Frame Averaging, Image Identifier, Image Dimension Order, Image Physical Size X, Image Physical Size X Unit, Image Physical Size Y, Image Physical Size Y Unit, Image Physical Size Z, Image Physical Size Z Unit, Image Pixels BigEndian, Image Plane Count, Image Channel Size, Image Number of Timepoints, Image X Pixels, Image Y Pixels, Image Z Pixels, Image Pixel Type",FALSE,,,File View,HTAN, -ImagingLevel2_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, -Image Protocol Link,"Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.",,,FALSE,,,,HTAN, -Image Platform Model,The specific model of the instrument used to carry out an imaging experiment.,,,FALSE,,,,HTAN, -Image Platform Manufacturer,Producer of the imaging equipment that was used to generate the digital image,,,FALSE,,,,HTAN, -Image Software,"The name of the software package that was used to capture, generate, and process the image.",,,FALSE,,,,HTAN, -Image Objective,Objective lens identifier,,,FALSE,,,,HTAN, -Image Nominal Magnification,The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units),,,FALSE,,,,HTAN, -Image Lense Aperture,The numerical aperture of the lens. Floating point value > 0.,,,FALSE,,,,HTAN, -Image Working Distance,"The working distance of the lens, expressed as a floating point number. Floating point > 0.",,,FALSE,,,,HTAN, -Image Working Distance Unit,The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),"cm, mm, Β΅m, nm, Γ…",,FALSE,,,,HTAN, -Image Immersion Type,Immersion medium,"Air, Oil, Water, Other, Multi, Glycerol",,FALSE,,,,HTAN, -Image Pyramidal,Does data file contain pyramid of images,"True, False",,FALSE,,,,HTAN, -Image Z stack,Does data file contain a Z-stack of images,,,FALSE,,,,HTAN, -Image Timeseries,Does data file contain a time-series of images,,,FALSE,,,,HTAN, -Image FOV Index,Index of FOV (as it pertains to its sequence order). Integer >= 1,,,FALSE,,,,HTAN, -Image FOV Size X,Field of view X dimension. Floating point,,,FALSE,,,,HTAN, -Image FOV Size X Unit,Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, -Image FOV Size Y,Field of view Y dimension. Floating point value,,,FALSE,,,,HTAN, -Image FOV Size Y Unit,Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, -Image Frame Averaging,"Number of frames averaged together (if no averaging, set to 1). Integer >= 1",,,FALSE,,,,HTAN, -Image Identifier,"Unique internal image identifier. eg ""Image:0"". (To be extracted from OME-XML)",,,FALSE,,,,HTAN, -Image Dimension Order,The order in which the individual planes of data are interleaved.,,,FALSE,,,,HTAN, -Image Physical Size X,Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.,,,FALSE,,,,HTAN, -Image Physical Size X Unit,The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, -Image Physical Size Y,Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.,,,FALSE,,,,HTAN, -Image Physical Size Y Unit,The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, -Image Physical Size Z,Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.,,,FALSE,,,,HTAN, -Image Physical Size Z Unit,The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, -Image Pixels BigEndian,Boolean (True/False),"True, False",,FALSE,,,,HTAN, -Image Plane Count,"Number of Z-planes (not to be confused with downsampled ""pyramid""). Integer >=1",,,FALSE,,,,HTAN, -Image Channel Size,Number of channels. Integer >= 1,,,FALSE,,,,HTAN, -Image Number of Timepoints,Number of time points. Integer >= 1,,,FALSE,,,,HTAN, -Image X Pixels,Size of image: X dimension (in pixels). Integer >= 1,,,FALSE,,,,HTAN, -Image Y Pixels,Size of image: Y dimension (in pixels). Integer >= 1,,,FALSE,,,,HTAN, -Image Z Pixels,Size of image: Z dimension (in pixels). Integer >= 1,,,FALSE,,,,HTAN, -Image Pixel Type,"Data type for each pixel value. E.g. ""uint16""",,,FALSE,,,,HTAN, -Imaging Level 3 Image,Quality controlled or co-registered image data,,"Component, ImagingLevel3Image_id, Filename, ImagingChannel Key, ImagingLevel2 Key, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, Image Objective, Image Nominal Magnification, Image Lense Aperture, Image Working Distance, Image Immersion Type, Image Pyramidal, Image Z stack, Image Timeseries, Image FOV Index, Image FOV Size X, Image FOV Size Y, Image FOV Size Y Unit, Image Frame Averaging",FALSE,,,File View,HTAN, -ImagingLevel3Image_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, -Imaging Level 3 Segments,Image segmentation mask information,,"Component, ImagingLevel3Segments_id, Filename, ImagingLevel2 Key, ImagingLevel3Image Key, Image Segmentation Data Type, Image Parameter file, Software and Version, Image Object Class, Image Object Class Description, Image Number of Objects",FALSE,,,File View,HTAN, -ImagingLevel3Segments_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, -Image Segmentation Data Type,Specifies how the segmentation is stored,"Mask, Outline, Polygon, Probability Map, Point",,TRUE,,,,HTAN,str -Image Parameter file,Path in Synapse to a text file listing algorithm version numbers and relevant parameters needed to reproduce the analysis,,,FALSE,,,,HTAN, -Image Object Class,Defines the structure that the mask delineates,"Nucleus, Cytoplasm, Plasma Membrane, Whole Cell, Spot, Other",,FALSE,,,,HTAN,str -Image Number of Objects,The number of objects (eg cells) described,,,FALSE,,,,HTAN,num -Image Object Class Description,"If Imaging Object Class is ""Other"", please use this field to provide a text description of the imaging object class associated with the segmentation data",,,FALSE,,,,HTAN,str -Imaging Level 4,Derived imaging data or object by feature array,,"Component, ImagingLevel4_id, Filename, ImagingLevel2 Key, ImagingLevel3Image Key, ImagingLevel3Segments Key, Image Parameter file, Image Software, Image Number of Objects, Image Number of Features, Image Object Class, Image Summary Statistic",FALSE,,,File View,HTAN, -ImagingLevel4_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, -Image Number of Features,The number of features (eg channels) described,,,TRUE,,,,HTAN,num -Image Summary Statistic,Function used to summarize object/feature intensity,"Mean, Median, Not Specified",,TRUE,,,,HTAN, -Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status",FALSE,,,Study,, -Individual_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Individual Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0,list like -Individual Last Known Disease Status,Text term that describes the last known status of an individual.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS Imaging v1.0, -Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0,str -Individual Disease Type,"The type of tumor associated with the specimen. Multiple values permitted, comma separated.","Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,CDS Imaging v1.0, -Individual Primary Diagnosis,"Text term used to describe the patient's histologic diagnosis, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,TRUE,,,,CDS Metadata v1.3.3/Diagnosis, -Individual Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS Imaging v1.0/Diagnosis, -Individual Tumor Subtype,"The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.",,,FALSE,,,,MC2/STE,str -Individual Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, -Individual Site of Origin,"The text term used to describe the anatomic site of origin, of the patient's malignant disease.","Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,CDS Imaging v1.0, -Individual Age at Diagnosis,"Age at the time the individual was diagnosed, expressed in years.",,,FALSE,,,,CDS Imaging v1.0,num -Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,TRUE,,,,CDS Imaging v1.0/participant,str -Individual dbGaP Subject Id,The identifer assigned to the participant by dbGap,,,FALSE,,,,CDS Imaging v1.0,str -Individual Days to Last Followup,Number of days between the dates used for index and last follow-up,,,FALSE,,,,CDS Imaging v1.0,int -Individual Primary Tumor Stage,Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"Not Reported, T0, T1, T1a, T1a1, T1a2, T1b, T1b1, T1b2, T1c, T1mi, T2, T2a, T2a1, T2a2, T2b, T2c, T2d, T3, T3a, T3b, T3c, T3d, T4, T4a, T4b, T4c, T4d, T4e, T5, Ta, Tis, Tis (DCIS), Tis (LCIS), Tis (Paget's), TX, Unknown",,FALSE,,,,CDS Imaging v1.0, -Individual Tumor Lymph Node Stage,Extent of the regional lymph node involvement for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"N0, N0 (i+), N0 (i-), N0 (mol+), N0 (mol-), N1, N1a, N1b, N1bI, N1bII, N1bIII, N1bIV, N1c, N1mi, N2, N2a, N2b, N2c, N3, N3a, N3b, N3c, N4, NX, Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, -Individual Days To Recurrence,Number of days between the date used for index and the date the patient's disease recurred,,,FALSE,,,,CDS Imaging v1.0,int -Individual Days to Last Known Disease Status,"Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days.",,,FALSE,,,,CDS Imaging v1.0,int -Individual Treatment Type,Text term that describes the kind of treatment administered.,"3-Dimensional Conformal Radiation Therapy, Allogeneic Hematopoietic Stem Cell Transplantation, Autologous Stem Cell Transplantation, Brachytherapy, Cellular Therapy, Chemotherapy, Concurrent Chemoradiation, Conventional Radiotherapy, Electron Beam Radiation Therapy, External Beam Radiation Therapy, High-Dose Rate Brachytherapy, Hormone Therapy, Immunotherapy, Intensity-Modulated Radiation Therapy, Low-Dose Rate Brachytherapy, Not Reported, Organ Transplantation, Palliative Care, Pharmacotherapy, Photon Beam Radiation Therapy, Proton Beam Radiation Therapy, Radiation Therapy, Radiofrequency Ablation, Radiopharmaceutical, Stem Cell Transplant, Stereotactic Body Radiation Therapy, Stereotactic Radiosurgery, Surgical Procedure, Targeted Molecular Therapy, Unknown",,FALSE,,,,CDS Imaging v1.0, -Individual Days to Treatment,Number of days between the date used for index and the date the treatment started.,,,FALSE,,,,CDS Imaging v1.0,int -Individual Therapeutic Agent,Text identification of the individual agent(s) used as part of a treatment regimen.,"10-Deacetyltaxol, 11C Topotecan, 11D10 AluGel Anti-Idiotype Monoclonal Antibody, 12-Allyldeoxoartemisinin, 13-Deoxydoxorubicin, 14C BMS-275183, 17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521, 2-Deoxy-D-glucose, 2-Ethylhydrazide, 2-Fluoroadenine, 2-Fluorofucose-containing SGN-2FF, 2-Hydroxyestradiol, 2-Hydroxyestrone, 2-Hydroxyflutamide Depot, 2-Hydroxyoleic Acid, 2-Methoxyestradiol, 2-Methoxyestradiol Nanocrystal Colloidal Dispersion, 2-Methoxyestrone, 2-O; 3-O Desulfated Heparin, 2;6-Diaminopurine, 2;6-Dimethoxyquinone, 2'-F-ara-deoxyuridine, 3'-C-ethynylcytidine, 3'-dA Phosphoramidate NUC-7738, 4-Nitroestrone 3-Methyl Ether, 4-Thio-2-deoxycytidine, 4'-Iodo-4'-Deoxydoxorubicin, 5-Aza-4'-thio-2'-deoxycytidine, 5-Fluoro-2-Deoxycytidine, 6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158, 7-Cyanoquinocarcinol, 7-Ethyl-10-Hydroxycamptothecin, 7-Hydroxystaurosporine, 8-Azaguanine, 9-Ethyl 6-Mercaptopurine, 9H-Purine-6Thio-98D, A2A Receptor Antagonist EOS100850, Abagovomab, Abarelix, Abemaciclib, Abemaciclib Mesylate, Abexinostat, Abexinostat Tosylate, Abiraterone, Abiraterone Acetate, Abituzumab, Acai Berry Juice, Acalabrutinib, Acalisib, Aceglatone, Acetylcysteine, Acitretin, Acivicin, Aclacinomycin B, Aclarubicin, Acodazole, Acodazole Hydrochloride, Acolbifene Hydrochloride, Acridine, Acridine Carboxamide, Acronine, Actinium Ac 225 Lintuzumab, Actinium Ac 225-FPI-1434, Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591, Actinomycin C2, Actinomycin C3, Actinomycin F1, Activin Type 2B Receptor Fc Fusion Protein STM 434, Acyclic Nucleoside Phosphonate Prodrug ABI-1968, Ad-RTS-hIL-12, Adagloxad Simolenin, Adavosertib, Adecatumumab, Adenosine A2A Receptor Antagonist AZD4635, Adenosine A2A Receptor Antagonist CS3005, Adenosine A2A Receptor Antagonist NIR178, Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999, Adenosine A2A/A2B Receptor Antagonist AB928, Adenosine A2B Receptor Antagonist PBF-1129, Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201, Adenoviral Brachyury Vaccine ETBX-051, Adenoviral Cancer Vaccine PF-06936308, Adenoviral MUC1 Vaccine ETBX-061, Adenoviral PSA Vaccine ETBX-071, Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001, Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP, Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901, Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE, Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918, Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931, Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3, Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001, Aderbasib, ADH-1, AE37 Peptide/GM-CSF Vaccine, AEE788, Aerosol Gemcitabine, Aerosolized Aldesleukin, Aerosolized Liposomal Rubitecan, Afatinib, Afatinib Dimaleate, Afimoxifene, Afuresertib, Agatolimod Sodium, Agerafenib, Aglatimagene Besadenovec, Agonistic Anti-CD40 Monoclonal Antibody ADC-1013, Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949, Agonistic Anti-OX40 Monoclonal Antibody MEDI6469, AKR1C3-activated Prodrug OBI-3424, AKT 1/2 Inhibitor BAY1125976, AKT Inhibitor ARQ 092, Akt Inhibitor LY2780301, Akt Inhibitor MK2206, Akt Inhibitor SR13668, Akt/ERK Inhibitor ONC201, Alacizumab Pegol, Alanosine, Albumin-binding Cisplatin Prodrug BTP-114, Aldesleukin, Aldoxorubicin, Alectinib, Alefacept, Alemtuzumab, Alestramustine, Alflutinib Mesylate, Algenpantucel-L, Alisertib, Alitretinoin, ALK Inhibitor, ALK Inhibitor ASP3026, ALK Inhibitor PLB 1003, ALK Inhibitor RO5424802, ALK Inhibitor TAE684, ALK Inhibitor WX-0593, ALK-2 Inhibitor TP-0184, ALK-FAK Inhibitor CEP-37440, ALK/c-Met Inhibitor TQ-B3139, ALK/FAK/Pyk2 Inhibitor CT-707, ALK/ROS1/Met Inhibitor TQ-B3101, ALK/TRK Inhibitor TSR-011, Alkotinib, Allodepleted T Cell Immunotherapeutic ATIR101, Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715, Allogeneic Anti-BCMA-CAR T-cells PBCAR269A, Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells, Allogeneic Anti-CD19 CAR T-cells ALLO-501A, Allogeneic Anti-CD19 Universal CAR-T Cells CTA101, Allogeneic Anti-CD19-CAR T-cells PBCAR0191, Allogeneic Anti-CD20 CAR T-cells LUCAR-20S, Allogeneic Anti-CD20-CAR T-cells PBCAR20A, Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22, Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100, Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001, Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001, Allogeneic Cellular Vaccine 1650-G, Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120, Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130, Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A, Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM, Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine, Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo, Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2, Allogeneic Irradiated Melanoma Cell Vaccine CSF470, Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307, Allogeneic Melanoma Vaccine AGI-101H, Allogeneic Natural Killer Cell Line MG4101, Allogeneic Natural Killer Cell Line NK-92, Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01, Allogeneic Renal Cell Carcinoma Vaccine MGN1601, Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19, Allosteric ErbB Inhibitor BDTX-189, Allovectin-7, Almurtide, Alobresib, Alofanib, Alpelisib, Alpha Galactosylceramide, Alpha V Beta 1 Inhibitor ATN-161, Alpha V Beta 8 Antagonist PF-06940434, alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801, Alpha-Gal AGI-134, Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H, Alpha-Thioguanine Deoxyriboside, Alpha-tocopheryloxyacetic Acid, Alsevalimab, Altiratinib, Altretamine, Alvespimycin, Alvespimycin Hydrochloride, Alvocidib, Alvocidib Hydrochloride, Alvocidib Prodrug TP-1287, Amatuximab, Ambamustine, Ambazone, Amblyomin-X, Amcasertib, Ametantrone, Amifostine, Amino Acid Injection, Aminocamptothecin, Aminocamptothecin Colloidal Dispersion, Aminoflavone Prodrug AFP464, Aminopterin, Aminopterin Sodium, Amivantamab, Amolimogene Bepiplasmid, Amonafide L-Malate, Amrubicin, Amrubicin Hydrochloride, Amsacrine, Amsacrine Lactate, Amsilarotene, Amustaline, Amustaline Dihydrochloride, Amuvatinib, Amuvatinib Hydrochloride, Anakinra, Anastrozole, Anaxirone, Ancitabine, Ancitabine Hydrochloride, Andecaliximab, Androgen Antagonist APC-100, Androgen Receptor Antagonist BAY 1161116, Androgen Receptor Antagonist SHR3680, Androgen Receptor Antagonist TAS3681, Androgen Receptor Antagonist TRC253, Androgen Receptor Antisense Oligonucleotide AZD5312, Androgen Receptor Antisense Oligonucleotide EZN-4176, Androgen Receptor Degrader ARV-110, Androgen Receptor Degrader CC-94676, Androgen Receptor Downregulator AZD3514, Androgen Receptor Inhibitor EPI-7386, Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118, Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10, Andrographolide, Androstane Steroid HE3235, Anetumab Ravtansine, Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241, Angiogenesis Inhibitor GT-111, Angiogenesis Inhibitor JI-101, Angiogenesis/Heparanase Inhibitor PG545, Angiopoietin-2-specific Fusion Protein PF-04856884, Anhydrous Enol-oxaloacetate, Anhydrovinblastine, Aniline Mustard, Anlotinib Hydrochloride, Annamycin, Annamycin Liposomal, Annonaceous Acetogenins, Ansamitomicin P-3, Anthramycin, Anthrapyrazole, Anti c-KIT Antibody-drug Conjugate LOP628, Anti-5T4 Antibody-drug Conjugate ASN004, Anti-5T4 Antibody-Drug Conjugate PF-06263507, Anti-5T4 Antibody-drug Conjugate SYD1875, Anti-A33 Monoclonal Antibody KRN330, Anti-A5B1 Integrin Monoclonal Antibody PF-04605412, Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087, Anti-AG7 Antibody Drug Conjugate AbGn-107, Anti-AGS-16 Monoclonal Antibody AGS-16M18, Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME, Anti-AGS-8 Monoclonal Antibody AGS-8M4, Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B, Anti-alpha5beta1 Integrin Antibody MINT1526A, Anti-ANG2 Monoclonal Antibody MEDI-3617, Anti-angiopoietin Monoclonal Antibody AMG 780, Anti-APRIL Monoclonal Antibody BION-1301, Anti-AXL Fusion Protein AVB-S6-500, Anti-AXL/PBD Antibody-drug Conjugate ADCT-601, Anti-B7-H3 Antibody DS-5573a, Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a, Anti-B7-H4 Monoclonal Antibody FPA150, Anti-B7H3 Antibody-drug Conjugate MGC018, Anti-BCMA Antibody SEA-BCMA, Anti-BCMA Antibody-drug Conjugate AMG 224, Anti-BCMA Antibody-drug Conjugate CC-99712, Anti-BCMA Antibody-drug Conjugate GSK2857916, Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA, Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459, Anti-BCMA/CD3 BiTE Antibody AMG 420, Anti-BCMA/CD3 BiTE Antibody AMG 701, Anti-BCMA/CD3 BiTE Antibody REGN5458, Anti-BCMA/PBD ADC MEDI2228, Anti-BTLA Monoclonal Antibody TAB004, Anti-BTN3A Agonistic Monoclonal Antibody ICT01, Anti-c-fms Monoclonal Antibody AMG 820, Anti-c-KIT Monoclonal Antibody CDX 0158, Anti-c-Met Antibody-drug Conjugate HTI-1066, Anti-c-Met Antibody-drug Conjugate TR1801, Anti-c-Met Monoclonal Antibody ABT-700, Anti-c-Met Monoclonal Antibody ARGX-111, Anti-c-Met Monoclonal Antibody HLX55, Anti-c-MET Monoclonal Antibody LY2875358, Anti-C-met Monoclonal Antibody SAIT301, Anti-C4.4a Antibody-Drug Conjugate BAY1129980, Anti-C5aR Monoclonal Antibody IPH5401, Anti-CA19-9 Monoclonal Antibody 5B1, Anti-CA6-DM4 Immunoconjugate SAR566658, Anti-CCR7 Antibody-drug Conjugate JBH492, Anti-CD117 Monoclonal Antibody JSP191, Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1, Anti-CD123 ADC IMGN632, Anti-CD123 Monoclonal Antibody CSL360, Anti-CD123 Monoclonal Antibody KHK2823, Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404, Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A, Anti-CD123/CD3 Bispecific Antibody APVO436, Anti-CD123/CD3 Bispecific Antibody JNJ-63709178, Anti-CD123/CD3 BiTE Antibody SAR440234, Anti-CD137 Agonistic Monoclonal Antibody ADG106, Anti-CD137 Agonistic Monoclonal Antibody AGEN2373, Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017, Anti-CD137 Agonistic Monoclonal Antibody CTX-471, Anti-CD137 Agonistic Monoclonal Antibody LVGN6051, Anti-CD157 Monoclonal Antibody MEN1112, Anti-CD166 Probody-drug Conjugate CX-2009, Anti-CD19 Antibody-drug Conjugate SGN-CD19B, Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003, Anti-CD19 iCAR NK Cells, Anti-CD19 Monoclonal Antibody DI-B4, Anti-CD19 Monoclonal Antibody MDX-1342, Anti-CD19 Monoclonal Antibody MEDI-551, Anti-CD19 Monoclonal Antibody XmAb5574, Anti-CD19-DM4 Immunoconjugate SAR3419, Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL, Anti-CD19/CD22 CAR NK Cells, Anti-CD19/CD3 BiTE Antibody AMG 562, Anti-CD19/CD3 Tetravalent Antibody AFM11, Anti-CD20 Monoclonal Antibody B001, Anti-CD20 Monoclonal Antibody BAT4306F, Anti-CD20 Monoclonal Antibody MIL62, Anti-CD20 Monoclonal Antibody PRO131921, Anti-CD20 Monoclonal Antibody SCT400, Anti-CD20 Monoclonal Antibody TL011, Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002, Anti-CD20-engineered Toxin Body MT-3724, Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323, Anti-CD20/CD3 Monoclonal Antibody REGN1979, Anti-CD20/CD3 Monoclonal Antibody XmAb13676, Anti-CD205 Antibody-drug Conjugate OBT076, Anti-CD22 ADC TRPH-222, Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S, Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A, Anti-CD25 Monoclonal Antibody RO7296682, Anti-CD25-PBD Antibody-drug Conjugate ADCT-301, Anti-CD26 Monoclonal Antibody YS110, Anti-CD27 Agonistic Monoclonal Antibody MK-5890, Anti-CD27L Antibody-Drug Conjugate AMG 172, Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1), Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135, Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05, Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564, Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119, Anti-CD3/CD20 Bispecific Antibody GEN3013, Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424, Anti-CD3/CD7-Ricin Toxin A Immunotoxin, Anti-CD30 Monoclonal Antibody MDX-1401, Anti-CD30 Monoclonal Antibody XmAb2513, Anti-CD30/CD16A Monoclonal Antibody AFM13, Anti-CD30/DM1 Antibody-drug Conjugate F0002, Anti-CD32B Monoclonal Antibody BI-1206, Anti-CD33 Antibody-drug Conjugate IMGN779, Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564, Anti-CD33 Monoclonal Antibody BI 836858, Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633, Anti-CD33/CD3 Bispecific Antibody GEM 333, Anti-CD33/CD3 Bispecific Antibody JNJ-67571244, Anti-CD33/CD3 BiTE Antibody AMG 330, Anti-CD33/CD3 BiTE Antibody AMG 673, Anti-CD352 Antibody-drug Conjugate SGN-CD352A, Anti-CD37 Antibody-Drug Conjugate IMGN529, Anti-CD37 Bispecific Monoclonal Antibody GEN3009, Anti-CD37 MMAE Antibody-drug Conjugate AGS67E, Anti-CD37 Monoclonal Antibody BI 836826, Anti-CD38 Antibody-drug Conjugate STI-6129, Anti-CD38 Monoclonal Antibody MOR03087, Anti-CD38 Monoclonal Antibody SAR442085, Anti-CD38 Monoclonal Antibody TAK-079, Anti-CD38-targeted IgG4-attenuated IFNa TAK-573, Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257, Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342, Anti-CD39 Monoclonal Antibody SRF617, Anti-CD39 Monoclonal Antibody TTX-030, Anti-CD40 Agonist Monoclonal Antibody ABBV-927, Anti-CD40 Agonist Monoclonal Antibody CDX-1140, Anti-CD40 Monoclonal Antibody Chi Lob 7/4, Anti-CD40 Monoclonal Antibody SEA-CD40, Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042, Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428, Anti-CD40L Fc-Fusion Protein BMS-986004, Anti-CD44 Monoclonal Antibody RO5429083, Anti-CD45 Monoclonal Antibody AHN-12, Anti-CD46 Antibody-drug Conjugate FOR46, Anti-CD47 ADC SGN-CD47M, Anti-CD47 Monoclonal Antibody AO-176, Anti-CD47 Monoclonal Antibody CC-90002, Anti-CD47 Monoclonal Antibody Hu5F9-G4, Anti-CD47 Monoclonal Antibody IBI188, Anti-CD47 Monoclonal Antibody IMC-002, Anti-CD47 Monoclonal Antibody SHR-1603, Anti-CD47 Monoclonal Antibody SRF231, Anti-CD47 Monoclonal Antibody TJC4, Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801, Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A, Anti-CD52 Monoclonal Antibody ALLO-647, Anti-CD70 Antibody-Drug Conjugate MDX-1203, Anti-CD70 Antibody-drug Conjugate SGN-CD70A, Anti-CD70 CAR-expressing T Lymphocytes, Anti-CD70 Monoclonal Antibody MDX-1411, Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029, Anti-CD73 Monoclonal Antibody BMS-986179, Anti-CD73 Monoclonal Antibody CPI-006, Anti-CD73 Monoclonal Antibody NZV930, Anti-CD73 Monoclonal Antibody TJ4309, Anti-CD74 Antibody-drug Conjugate STRO-001, Anti-CD98 Monoclonal Antibody IGN523, Anti-CDH6 Antibody-drug Conjugate HKT288, Anti-CEA BiTE Monoclonal Antibody AMG211, Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody, Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2, Anti-CEACAM1 Monoclonal Antibody CM-24, Anti-CEACAM5 Antibody-Drug Conjugate SAR408701, Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47, Anti-CEACAM6 Antibody BAY1834942, Anti-claudin18.2 Monoclonal Antibody AB011, Anti-Claudin18.2 Monoclonal Antibody TST001, Anti-CLDN6 Monoclonal Antibody ASP1650, Anti-CLEC12A/CD3 Bispecific Antibody MCLA117, Anti-CLEVER-1 Monoclonal Antibody FP-1305, Anti-CSF1 Monoclonal Antibody PD-0360324, Anti-CSF1R Monoclonal Antibody IMC-CS4, Anti-CSF1R Monoclonal Antibody SNDX-6352, Anti-CTGF Monoclonal Antibody FG-3019, Anti-CTLA-4 Monoclonal Antibody ADG116, Anti-CTLA-4 Monoclonal Antibody ADU-1604, Anti-CTLA-4 Monoclonal Antibody AGEN1181, Anti-CTLA-4 Monoclonal Antibody BCD-145, Anti-CTLA-4 Monoclonal Antibody HBM4003, Anti-CTLA-4 Monoclonal Antibody MK-1308, Anti-CTLA-4 Monoclonal Antibody ONC-392, Anti-CTLA-4 Monoclonal Antibody REGN4659, Anti-CTLA-4 Probody BMS-986288, Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217, Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841, Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015, Anti-CTLA4 Antibody Fc Fusion Protein KN044, Anti-CTLA4 Monoclonal Antibody BMS-986218, Anti-CXCR4 Monoclonal Antibody PF-06747143, Anti-Denatured Collagen Monoclonal Antibody TRC093, Anti-DKK-1 Monoclonal Antibody LY2812176, Anti-DKK1 Monoclonal Antibody BHQ880, Anti-DLL3/CD3 BiTE Antibody AMG 757, Anti-DLL4 Monoclonal Antibody MEDI0639, Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83, Anti-DR5 Agonist Monoclonal Antibody TRA-8, Anti-DR5 Agonistic Antibody DS-8273a, Anti-DR5 Agonistic Monoclonal Antibody INBRX-109, Anti-EGFR Monoclonal Antibody CPGJ 602, Anti-EGFR Monoclonal Antibody EMD 55900, Anti-EGFR Monoclonal Antibody GC1118, Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX, Anti-EGFR Monoclonal Antibody HLX-07, Anti-EGFR Monoclonal Antibody Mixture MM-151, Anti-EGFR Monoclonal Antibody RO5083945, Anti-EGFR Monoclonal Antibody SCT200, Anti-EGFR Monoclonal Antibody SYN004, Anti-EGFR TAP Antibody-drug Conjugate IMGN289, Anti-EGFR/c-Met Bispecific Antibody EMB-01, Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372, Anti-EGFR/CD16A Bispecific Antibody AFM24, Anti-EGFR/DM1 Antibody-drug Conjugate AVID100, Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013, Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321, Anti-EGFRvIII Antibody Drug Conjugate AMG 595, Anti-EGFRvIII Immunotoxin MR1-1, Anti-EGFRvIII/CD3 BiTE Antibody AMG 596, Anti-EGP-2 Immunotoxin MOC31-PE, Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F, Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F, Anti-Ep-CAM Monoclonal Antibody ING-1, Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310, Anti-EphA2 Monoclonal Antibody DS-8895a, Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547, Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111, Anti-ErbB3 Antibody ISU104, Anti-ErbB3 Monoclonal Antibody AV-203, Anti-ErbB3 Monoclonal Antibody CDX-3379, Anti-ErbB3 Monoclonal Antibody REGN1400, Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141, Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A, Anti-FAP/Interleukin-2 Fusion Protein RO6874281, Anti-FCRH5/CD3 BiTE Antibody BFCR4350A, Anti-FGFR2 Antibody BAY1179470, Anti-FGFR3 Antibody-drug Conjugate LY3076226, Anti-FGFR4 Monoclonal Antibody U3-1784, Anti-FLT3 Antibody-drug Conjugate AGS62P1, Anti-FLT3 Monoclonal Antibody 4G8-SDIEM, Anti-FLT3 Monoclonal Antibody IMC-EB10, Anti-FLT3/CD3 BiTE Antibody AMG 427, Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002, Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202, Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012, Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962, Anti-GARP Monoclonal Antibody ABBV-151, Anti-GCC Antibody-Drug Conjugate MLN0264, Anti-GCC Antibody-Drug Conjugate TAK-164, Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody, Anti-GD2 Monoclonal Antibody hu14.18K322A, Anti-GD2 Monoclonal Antibody MORAb-028, Anti-GD3 Antibody-drug Conjugate PF-06688992, Anti-GITR Agonistic Monoclonal Antibody ASP1951, Anti-GITR Agonistic Monoclonal Antibody BMS-986156, Anti-GITR Agonistic Monoclonal Antibody INCAGN01876, Anti-GITR Monoclonal Antibody GWN 323, Anti-GITR Monoclonal Antibody MK-4166, Anti-Globo H Monoclonal Antibody OBI-888, Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999, Anti-Glypican 3/CD3 Bispecific Antibody ERY974, Anti-GnRH Vaccine PEP223, Anti-gpA33/CD3 Monoclonal Antibody MGD007, Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a, Anti-gremlin-1 Monoclonal Antibody UCB6114, Anti-GRP78 Monoclonal Antibody PAT-SM6, Anti-HA Epitope Monoclonal Antibody MEDI8852, Anti-HB-EGF Monoclonal Antibody KHK2866, Anti-HBEGF Monoclonal Antibody U3-1565, Anti-hepcidin Monoclonal Antibody LY2787106, Anti-HER-2 Bispecific Antibody KN026, Anti-HER2 ADC DS-8201a, Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702, Anti-HER2 Antibody-drug Conjugate A166, Anti-HER2 Antibody-drug Conjugate ARX788, Anti-HER2 Antibody-drug Conjugate BAT8001, Anti-HER2 Antibody-drug Conjugate DP303c, Anti-HER2 Antibody-drug Conjugate MEDI4276, Anti-HER2 Antibody-drug Conjugate RC48, Anti-HER2 Bi-specific Monoclonal Antibody ZW25, Anti-HER2 Bispecific Antibody-drug Conjugate ZW49, Anti-HER2 Immune Stimulator-antibody Conjugate NJH395, Anti-HER2 Monoclonal Antibody B002, Anti-HER2 Monoclonal Antibody CT-P6, Anti-HER2 Monoclonal Antibody HLX22, Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343, Anti-HER2-DM1 ADC B003, Anti-HER2-DM1 Antibody-drug Conjugate GQ1001, Anti-HER2-vc0101 ADC PF-06804103, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302, Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128, Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522, Anti-HER2/MMAE Antibody-drug Conjugate MRG002, Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A, Anti-HER3 Antibody-drug Conjugate U3 1402, Anti-HER3 Monoclonal Antibody GSK2849330, Anti-HGF Monoclonal Antibody TAK-701, Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968, Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1, Anti-HLA-DR Monoclonal Antibody IMMU-114, Anti-HLA-G Antibody TTX-080, Anti-human GITR Monoclonal Antibody AMG 228, Anti-human GITR Monoclonal Antibody TRX518, Anti-ICAM-1 Monoclonal Antibody BI-505, Anti-ICOS Agonist Antibody GSK3359609, Anti-ICOS Agonist Monoclonal Antibody BMS-986226, Anti-ICOS Monoclonal Antibody KY1044, Anti-ICOS Monoclonal Antibody MEDI-570, Anti-IGF-1R Monoclonal Antibody AVE1642, Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022, Anti-IL-1 alpha Monoclonal Antibody MABp1, Anti-IL-13 Humanized Monoclonal Antibody TNX-650, Anti-IL-15 Monoclonal Antibody AMG 714, Anti-IL-8 Monoclonal Antibody BMS-986253, Anti-IL-8 Monoclonal Antibody HuMax-IL8, Anti-ILDR2 Monoclonal Antibody BAY 1905254, Anti-ILT4 Monoclonal Antibody MK-4830, Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A, Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388, Anti-IRF4 Antisense Oligonucleotide ION251, Anti-KIR Monoclonal Antibody IPH 2101, Anti-KSP/Anti-VEGF siRNAs ALN-VSP02, Anti-LAG-3 Monoclonal Antibody IBI-110, Anti-LAG-3 Monoclonal Antibody INCAGN02385, Anti-LAG-3 Monoclonal Antibody LAG525, Anti-LAG-3 Monoclonal Antibody REGN3767, Anti-LAG-3/PD-L1 Bispecific Antibody FS118, Anti-LAG3 Monoclonal Antibody BI 754111, Anti-LAG3 Monoclonal Antibody MK-4280, Anti-LAG3 Monoclonal Antibody TSR-033, Anti-LAMP1 Antibody-drug Conjugate SAR428926, Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181, Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102, Anti-LGR5 Monoclonal Antibody BNC101, Anti-LIF Monoclonal Antibody MSC-1, Anti-LILRB4 Monoclonal Antibody IO-202, Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A, Anti-Ly6E Antibody-Drug Conjugate RG 7841, Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C, Anti-Melanin Monoclonal Antibody PTI-6D2, Anti-mesothelin Antibody-drug Conjugate BMS-986148, Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100, Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A, Anti-mesothelin/MMAE Antibody-drug Conjugate RC88, Anti-Met Monoclonal Antibody Mixture Sym015, Anti-Met/EGFR Monoclonal Antibody LY3164530, Anti-MMP-9 Monoclonal Antibody GS-5745, Anti-MUC1 Monoclonal Antibody BTH1704, Anti-MUC16/CD3 Bispecific Antibody REGN4018, Anti-MUC16/CD3 BiTE Antibody REGN4018, Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A, Anti-MUC17/CD3 BiTE Antibody AMG 199, Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062, Anti-myostatin Monoclonal Antibody LY2495655, Anti-NaPi2b Antibody-drug Conjugate XMT-1592, Anti-NaPi2b Monoclonal Antibody XMT-1535, Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E, Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A, Anti-nf-P2X7 Antibody Ointment BIL-010t, Anti-NRP1 Antibody ASP1948, Anti-Nucleolin Aptamer AS1411, Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A, Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso, Anti-OFA Immunotherapeutic BB-MPI-03, Anti-OX40 Agonist Monoclonal Antibody ABBV-368, Anti-OX40 Agonist Monoclonal Antibody BGB-A445, Anti-OX40 Agonist Monoclonal Antibody PF-04518600, Anti-OX40 Antibody BMS 986178, Anti-OX40 Hexavalent Agonist Antibody INBRX-106, Anti-OX40 Monoclonal Antibody GSK3174998, Anti-OX40 Monoclonal Antibody IBI101, Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256, Anti-PD-1 Checkpoint Inhibitor PF-06801591, Anti-PD-1 Fusion Protein AMP-224, Anti-PD-1 Monoclonal Antibody 609A, Anti-PD-1 Monoclonal Antibody AK105, Anti-PD-1 Monoclonal Antibody AMG 404, Anti-PD-1 Monoclonal Antibody BAT1306, Anti-PD-1 Monoclonal Antibody BCD-100, Anti-PD-1 Monoclonal Antibody BI 754091, Anti-PD-1 Monoclonal Antibody CS1003, Anti-PD-1 Monoclonal Antibody F520, Anti-PD-1 Monoclonal Antibody GLS-010, Anti-PD-1 Monoclonal Antibody HLX10, Anti-PD-1 Monoclonal Antibody HX008, Anti-PD-1 Monoclonal Antibody JTX-4014, Anti-PD-1 Monoclonal Antibody LZM009, Anti-PD-1 Monoclonal Antibody MEDI0680, Anti-PD-1 Monoclonal Antibody MGA012, Anti-PD-1 Monoclonal Antibody SCT-I10A, Anti-PD-1 Monoclonal Antibody Sym021, Anti-PD-1 Monoclonal Antibody TSR-042, Anti-PD-1/Anti-CTLA4 DART Protein MGD019, Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315, Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669, Anti-PD-1/Anti-LAG-3 DART Protein MGD013, Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318, Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172, Anti-PD-1/CD47 Infusion Protein HX009, Anti-PD-1/CTLA-4 Bispecific Antibody AK104, Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752, Anti-PD-1/TIM-3 Bispecific Antibody RO7121661, Anti-PD-1/VEGF Bispecific Antibody AK112, Anti-PD-L1 Monoclonal Antibody A167, Anti-PD-L1 Monoclonal Antibody BCD-135, Anti-PD-L1 Monoclonal Antibody BGB-A333, Anti-PD-L1 Monoclonal Antibody CBT-502, Anti-PD-L1 Monoclonal Antibody CK-301, Anti-PD-L1 Monoclonal Antibody CS1001, Anti-PD-L1 Monoclonal Antibody FAZ053, Anti-PD-L1 Monoclonal Antibody GR1405, Anti-PD-L1 Monoclonal Antibody HLX20, Anti-PD-L1 Monoclonal Antibody IMC-001, Anti-PD-L1 Monoclonal Antibody LY3300054, Anti-PD-L1 Monoclonal Antibody MDX-1105, Anti-PD-L1 Monoclonal Antibody MSB2311, Anti-PD-L1 Monoclonal Antibody RC98, Anti-PD-L1 Monoclonal Antibody SHR-1316, Anti-PD-L1 Monoclonal Antibody TG-1501, Anti-PD-L1 Monoclonal Antibody ZKAB001, Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105, Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046, Anti-PD-L1/CD137 Bispecific Antibody MCLA-145, Anti-PD-L1/IL-15 Fusion Protein KD033, Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244, Anti-PD1 Monoclonal Antibody AGEN2034, Anti-PD1/CTLA4 Bispecific Antibody XmAb20717, Anti-PGF Monoclonal Antibody RO5323441, Anti-PKN3 siRNA Atu027, Anti-PLGF Monoclonal Antibody TB-403, Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4, Anti-PRAME Immunotherapeutic GSK2302032A, Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C, Anti-PRL-3 Monoclonal Antibody PRL3-zumab, Anti-prolactin Receptor Antibody LFA102, Anti-PSCA Monoclonal Antibody AGS-1C4D4, Anti-PSMA Monoclonal Antibody MDX1201-A488, Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704, Anti-PSMA Monoclonal Antibody-MMAE Conjugate, Anti-PSMA/CD28 Bispecific Antibody REGN5678, Anti-PSMA/CD3 Bispecific Antibody CCW702, Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081, Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414, Anti-PSMA/PBD ADC MEDI3726, Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020, Anti-PVRIG Monoclonal Antibody COM701, Anti-RANKL Monoclonal Antibody GB-223, Anti-RANKL Monoclonal Antibody JMT103, Anti-Ribonucleoprotein Antibody ATRC-101, Anti-ROR1 ADC VLS-101, Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002, Anti-S15 Monoclonal Antibody NC318, Anti-sCLU Monoclonal Antibody AB-16B5, Anti-SIRPa Monoclonal Antibody CC-95251, Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E, Anti-TAG-72 Monoclonal Antibody scFV CC-49/218, Anti-TF Monoclonal Antibody ALT-836, Anti-TGF-beta Monoclonal Antibody NIS793, Anti-TGF-beta Monoclonal Antibody SAR-439459, Anti-TGF-beta RII Monoclonal Antibody IMC-TR1, Anti-TIGIT Monoclonal Antibody AB154, Anti-TIGIT Monoclonal Antibody BGB-A1217, Anti-TIGIT Monoclonal Antibody BMS-986207, Anti-TIGIT Monoclonal Antibody COM902, Anti-TIGIT Monoclonal Antibody OMP-313M32, Anti-TIGIT Monoclonal Antibody SGN-TGT, Anti-TIM-3 Antibody BMS-986258, Anti-TIM-3 Monoclonal Antibody BGB-A425, Anti-TIM-3 Monoclonal Antibody INCAGN02390, Anti-TIM-3 Monoclonal Antibody MBG453, Anti-TIM-3 Monoclonal Antibody Sym023, Anti-TIM-3 Monoclonal Antibody TSR-022, Anti-TIM3 Monoclonal Antibody LY3321367, Anti-TIM3 Monoclonal Antibody SHR-1702, Anti-Tissue Factor Monoclonal Antibody MORAb-066, Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711, Anti-TROP2 Antibody-drug Conjugate BAT8003, Anti-TROP2 Antibody-drug Conjugate SKB264, Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a, Anti-TWEAK Monoclonal Antibody RG7212, Anti-VEGF Anticalin PRS-050-PEG40, Anti-VEGF Monoclonal Antibody hPV19, Anti-VEGF/ANG2 Nanobody BI 836880, Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T, Anti-VEGFC Monoclonal Antibody VGX-100, Anti-VEGFR2 Monoclonal Antibody HLX06, Anti-VEGFR2 Monoclonal Antibody MSB0254, Anti-VEGFR3 Monoclonal Antibody IMC-3C5, Anti-VISTA Monoclonal Antibody JNJ 61610588, Antiangiogenic Drug Combination TL-118, Antibody-drug Conjugate ABBV-011, Antibody-drug Conjugate ABBV-085, Antibody-drug Conjugate ABBV-155, Antibody-drug Conjugate ABBV-176, Antibody-drug Conjugate ABBV-838, Antibody-drug Conjugate ADC XMT-1536, Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014, Antibody-Drug Conjugate DFRF4539A, Antibody-drug Conjugate MEDI7247, Antibody-drug Conjugate PF-06647263, Antibody-drug Conjugate PF-06664178, Antibody-drug Conjugate SC-002, Antibody-drug Conjugate SC-003, Antibody-drug Conjugate SC-004, Antibody-drug Conjugate SC-005, Antibody-drug Conjugate SC-006, Antibody-drug Conjugate SC-007, Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008, Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV, Antimetabolite FF-10502, Antineoplastic Agent Combination SM-88, Antineoplastic Vaccine, Antineoplastic Vaccine GV-1301, Antineoplaston A10, Antineoplaston AS2-1, Antisense Oligonucleotide GTI-2040, Antisense Oligonucleotide QR-313, Antitumor B Key Active Component-alpha, Antrodia cinnamomea Supplement, Antroquinonol Capsule, Apalutamide, Apatorsen, Apaziquone, APC8015F, APE1/Ref-1 Redox Inhibitor APX3330, Aphidicoline Glycinate, Apilimod Dimesylate Capsule, Apitolisib, Apolizumab, Apomab, Apomine, Apoptosis Inducer BZL101, Apoptosis Inducer GCS-100, Apoptosis Inducer MPC-2130, Apricoxib, Aprinocarsen, Aprutumab, Aprutumab Ixadotin, AR Antagonist BMS-641988, Arabinoxylan Compound MGN3, Aranose, ARC Fusion Protein SL-279252, Archexin, Arcitumomab, Arfolitixorin, Arginase Inhibitor INCB001158, Arginine Butyrate, Arnebia Indigo Jade Pearl Topical Cream, Arsenic Trioxide, Arsenic Trioxide Capsule Formulation ORH 2014, Artemether Sublingual Spray, Artemisinin Dimer, Artesunate, Arugula Seed Powder, Aryl Hydrocarbon Receptor Antagonist BAY2416964, Aryl Hydrocarbon Receptor Inhibitor IK-175, Asaley, Asciminib, Ascrinvacumab, Ashwagandha Root Powder Extract, ASP4132, Aspacytarabine, Asparaginase, Asparaginase Erwinia chrysanthemi, Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10, Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10, Astuprotimut-R, Asulacrine, Asulacrine Isethionate, Asunercept, At 211 Monoclonal Antibody 81C6, Atamestane, Atezolizumab, Atiprimod, Atiprimod Dihydrochloride, Atiprimod Dimaleate, ATM Inhibitor M 3541, ATM Kinase Inhibitor AZD0156, ATM Kinase Inhibitor AZD1390, Atorvastatin Calcium, Atorvastatin Sodium, ATR Inhibitor RP-3500, ATR Kinase Inhibitor BAY1895344, ATR Kinase Inhibitor M1774, ATR Kinase Inhibitor M6620, ATR Kinase Inhibitor VX-803, Atrasentan Hydrochloride, Attenuated Listeria monocytogenes CRS-100, Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001, Attenuated Measles Virus Encoding SCD Transgene TMV-018, Atuveciclib, Audencel, Auranofin, Aurora A Kinase Inhibitor LY3295668, Aurora A Kinase Inhibitor LY3295668 Erbumine, Aurora A Kinase Inhibitor MK5108, Aurora A Kinase Inhibitor TAS-119, Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076, Aurora B Serine/Threonine Kinase Inhibitor TAK-901, Aurora B/C Kinase Inhibitor GSK1070916A, Aurora kinase A/B inhibitor TT-00420, Aurora Kinase Inhibitor AMG 900, Aurora Kinase Inhibitor BI 811283, Aurora Kinase Inhibitor MLN8054, Aurora Kinase Inhibitor PF-03814735, Aurora Kinase Inhibitor SNS-314, Aurora Kinase Inhibitor TTP607, Aurora Kinase/VEGFR2 Inhibitor CYC116, Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707, Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055, Autologous Anti-BCMA CAR T-cells PHE885, Autologous Anti-BCMA CAR-transduced T-cells KITE-585, Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11, Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053, Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143, Autologous Anti-CD123 CAR-T Cells, Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx, Autologous Anti-CD19 CAR T-cells IM19, Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19, Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19, Autologous Anti-CD19 CAR-CD28 T-cells ET019002, Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01, Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19, Autologous Anti-CD19 T-cell Receptor T cells ET190L1, Autologous Anti-CD19 TAC-T cells TAC01-CD19, Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells, Autologous Anti-CD19/CD22 CAR T-cells AUTO3, Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014, Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells, Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1, Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s, Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes, Autologous Anti-FLT3 CAR T Cells AMG 553, Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202, Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1, Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100, Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes, Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794, Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes, Autologous Anti-PSMA CAR-T Cells P-PSMA-101, Autologous AXL-targeted CAR T-cells CCT301-38, Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B, Autologous BCMA-targeted CAR T Cells CC-98633, Autologous BCMA-targeted CAR T Cells LCAR-B4822M, Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528, Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F, Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022, Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006, Autologous CD123-4SCAR-expressing T-cells 4SCAR123, Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1, Autologous CD19-targeted CAR T Cells CC-97540, Autologous CD19-targeted CAR T Cells JWCAR029, Autologous CD19-targeted CAR-T Cells GC007F, Autologous CD19/PD-1 Bispecific CAR-T Cells, Autologous CD20-4SCAR-expressing T-cells 4SCAR20, Autologous CD22-4SCAR-expressing T-cells 4SCAR22, Autologous CD38-4SCAR-expressing T-cells 4SCAR38, Autologous Clonal Neoantigen T Cells ATL001, Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19, Autologous Deep IL-15 Primed T-cells TRQ15-01, Autologous Dendritic Cell Vaccine ACT2001, Autologous Dendritic Cell-based Immunotherapeutic AV0113, Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa, Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells, Autologous Genetically-modified MAGE-A4 C1032 T Cells, Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858, Autologous HPV16 E7-specific HLA-A*02:01-restricted TCR Gene Engineered Lymphocytes KITE-439, Autologous LMP1/LMP2/EBNA1-specific HLA-A02:01/24:02/11:01-restricted TCR-expressing T-lymphocytes YT-E001, Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718, Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR, Autologous Mesenchymal Stem Cells Apceth_101, Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11, Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC, Autologous Multi-lineage Potential Cells, Autologous Nectin-4/FAP-targeted CAR-T Cells, Autologous NKG2D CAR T-cells CYAD-02, Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01, Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine, Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001, Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101, Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601, Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201, Autologous ROR2-targeted CAR T-cells CCT301-59, Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1, Autologous TCR-engineered T-cells IMA201, Autologous TCR-engineered T-cells IMA202, Autologous TCR-engineered T-cells IMA203, Autologous TCRm-expressing T-cells ET140203, Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG, Autologous Tumor Infiltrating Lymphocytes LN-144, Autologous Tumor Infiltrating Lymphocytes LN-145, Autologous Tumor Infiltrating Lymphocytes LN-145-S1, Autologous Tumor Infiltrating Lymphocytes MDA-TIL, Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T, Avadomide, Avadomide Hydrochloride, Avapritinib, Avdoralimab, Avelumab, Aviscumine, Avitinib Maleate, Axalimogene Filolisbac, Axatilimab, Axicabtagene Ciloleucel, Axitinib, AXL Inhibitor DS-1205c, AXL Inhibitor SLC-391, AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M, AXL/ FLT3/VEGFR2 Inhibitor KC1036, Axl/Mer Inhibitor INCB081776, Axl/Mer Inhibitor PF-07265807, Azacitidine, Azapicyl, Azaribine, Azaserine, Azathioprine, Azimexon, Azintuxizumab Vedotin, Aziridinylbenzoquinone RH1, Azotomycin, Azurin:50-77 Cell Penetrating Peptide p28, B-Raf/VEGFR-2 Inhibitor RAF265, Babaodan Capsule, Bacillus Calmette-Guerin Substrain Connaught Live Antigen, Bactobolin, Bafetinib, Balixafortide, Balstilimab, Baltaleucel-T, Banoxantrone, Barasertib, Bardoxolone, Bardoxolone Methyl, Baricitinib, Batabulin, Batabulin Sodium, Batimastat, Bavituximab, Bazedoxifene, Bazlitoran, BC-819 Plasmid/Polyethylenimine Complex, BCG Solution, BCG Tokyo-172 Strain Solution, BCG Vaccine, Bcl-2 Inhibitor APG 2575, Bcl-2 Inhibitor BCL201, Bcl-2 Inhibitor BGB-11417, Bcl-2 Inhibitor LP-108, Bcl-2 Inhibitor S65487, Bcl-Xs Adenovirus Vaccine, BCMA x CD3 T-cell Engaging Antibody CC-93269, BCMA-CD19 Compound CAR T Cells, BCMA/CD3e Tri-specific T-cell Activating Construct HPN217, Bcr-Abl Kinase Inhibitor K0706, Bcr-Abl Kinase Inhibitor PF-114, BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351, Beauvericin, Becatecarin, Belagenpumatucel-L, Belantamab Mafodotin, Belapectin, Belimumab, Belinostat, Belotecan Hydrochloride, Belvarafenib, Belzutifan, Bemarituzumab, Bemcentinib, Bempegaldesleukin, Benaxibine, Bendamustine, Bendamustine Hydrochloride, Bendamustine-containing Nanoparticle-based Formulation RXDX-107, Benzaldehyde Dimethane Sulfonate, Benzoylphenylurea, Berberine Chloride, Bermekimab, Bersanlimab, Berubicin Hydrochloride, Berzosertib, BET Bromodomain Inhibitor ZEN-3694, BET Inhibitor ABBV-744, BET Inhibitor BAY1238097, BET inhibitor BI 894999, BET Inhibitor BMS-986158, BET Inhibitor CC-90010, BET Inhibitor CPI-0610, BET Inhibitor FT-1101, BET Inhibitor GS-5829, BET Inhibitor GSK2820151, BET Inhibitor INCB054329, BET Inhibitor INCB057643, BET Inhibitor RO6870810, BET-bromodomain Inhibitor ODM-207, Beta Alethine, Beta-Carotene, Beta-elemene, Beta-Glucan, Beta-Glucan MM-10-001, Beta-lapachone Prodrug ARQ 761, Beta-Thioguanine Deoxyriboside, Betaglucin Gel, Betulinic Acid, Bevacizumab, Bexarotene, Bexmarilimab, BF-200 Gel Formulation, BH3 Mimetic ABT-737, Bi-functional Alkylating Agent VAL-083, Bicalutamide, Bimiralisib, Binetrakin, Binimetinib, Bintrafusp Alfa, Birabresib, Birinapant, Bis(choline)tetrathiomolybdate, Bisantrene, Bisantrene Hydrochloride, Bisnafide, Bisnafide Dimesylate, Bispecific Antibody 2B1, Bispecific Antibody AGEN1223, Bispecific Antibody AMG 509, Bispecific Antibody GS-1423, Bispecific Antibody MDX-H210, Bispecific Antibody MDX447, Bisthianostat, BiTE Antibody AMG 910, Bivalent BRD4 Inhibitor AZD5153, Bizalimogene Ralaplasmid, Bizelesin, BL22 Immunotoxin, Black Cohosh, Black Raspberry Nectar, Bleomycin, Bleomycin A2, Bleomycin B2, Bleomycin Sulfate, Blinatumomab, Blueberry Powder Supplement, BMI1 Inhibitor PTC596, BMS-184476, BMS-188797, BMS-214662, BMS-275183, Boanmycin Hydrochloride, Bomedemstat, Boronophenylalanine-Fructose Complex, Bortezomib, Bosutinib, Bosutinib Monohydrate, Botanical Agent BEL-X-HG, Botanical Agent LEAC-102, Bovine Cartilage, Bozitinib, BP-Cx1-Platinum Complex BP-C1, BR96-Doxorubicin Immunoconjugate, Brachyury-expressing Yeast Vaccine GI-6301, BRAF Inhibitor, BRAF Inhibitor ARQ 736, BRAF Inhibitor BGB-3245, BRAF Inhibitor PLX8394, BRAF(V600E) Kinase Inhibitor ABM-1310, BRAF(V600E) Kinase Inhibitor RO5212054, BRAF/EGFR Inhibitor BGB-283, BRAFV600/PI3K Inhibitor ASN003, BRD4 Inhibitor PLX2853, BRD4 Inhibitor PLX51107, Breflate, Brentuximab, Brentuximab Vedotin, Brequinar, Brequinar Sodium, Briciclib Sodium, Brigatinib, Brilanestrant, Brimonidine Tartrate Nanoemulsion OCU-300, Brivanib, Brivanib Alaninate, Brivudine, Brivudine Phosphoramidate, Broad-Spectrum Human Papillomavirus Vaccine V505, Broccoli Sprout/Broccoli Seed Extract Supplement, Bromacrylide, Bromebric Acid, Bromocriptine Mesylate, Brontictuzumab, Brostacillin Hydrochloride, Brostallicin, Broxuridine, Bruceanol A, Bruceanol B, Bruceanol C, Bruceanol D, Bruceanol E, Bruceanol F, Bruceanol G, Bruceanol H, Bruceantin, Bryostatin 1, BTK Inhibitor ARQ 531, BTK Inhibitor CT-1530, BTK Inhibitor DTRMWXHS-12, BTK Inhibitor HZ-A-018, BTK Inhibitor ICP-022, BTK Inhibitor LOXO-305, BTK Inhibitor M7583, BTK inhibitor TG-1701, Budigalimab, Budotitane, Bufalin, Buparlisib, Burixafor, Burixafor Hydrobromide, Burosumab, Buserelin, Bushen Culuan Decoction, Bushen-Jianpi Decoction, Busulfan, Buthionine Sulfoximine, BXQ-350 Nanovesicle Formulation, c-Kit Inhibitor PLX9486, c-Met Inhibitor ABN401, c-Met Inhibitor AL2846, c-Met Inhibitor AMG 208, c-Met Inhibitor AMG 337, c-Met Inhibitor GST-HG161, c-Met Inhibitor HS-10241, c-Met Inhibitor JNJ-38877605, c-Met Inhibitor MK2461, c-Met Inhibitor MK8033, c-Met Inhibitor MSC2156119J, C-myb Antisense Oligonucleotide G4460, c-raf Antisense Oligonucleotide ISIS 5132, C-VISA BikDD:Liposome, C/EBP Beta Antagonist ST101, CAB-ROR2-ADC BA3021, Cabazitaxel, Cabiralizumab, Cabozantinib, Cabozantinib S-malate, Cactinomycin, Caffeic Acid Phenethyl Ester, CAIX Inhibitor DTP348, CAIX Inhibitor SLC-0111, Calaspargase Pegol-mknl, Calcitriol, Calcium Release-activated Channel Inhibitor CM4620, Calcium Release-activated Channels Inhibitor RP4010, Calcium Saccharate, Calculus bovis/Moschus/Olibanum/Myrrha Capsule, Calicheamicin Gamma 1I, Camidanlumab Tesirine, Camptothecin, Camptothecin Analogue TLC388, Camptothecin Glycoconjugate BAY 38-3441, Camptothecin Sodium, Camptothecin-20(S)-O-Propionate Hydrate, Camrelizumab, Camsirubicin, Cancell, Cancer Peptide Vaccine S-588410, Canerpaturev, Canertinib Dihydrochloride, Canfosfamide, Canfosfamide Hydrochloride, Cannabidiol, Cantrixil, Cantuzumab Ravtansine, Capecitabine, Capecitabine Rapidly Disintegrating Tablet, Capivasertib, Capmatinib, Captopril, CAR T-Cells AMG 119, Caracemide, Carbendazim, Carbetimer, Carbogen, Carbon C 14-pamiparib, Carboplatin, Carboquone, Carboxyamidotriazole, Carboxyamidotriazole Orotate, Carboxyphenyl Retinamide, Carfilzomib, Caricotamide/Tretazicar, Carlumab, Carmofur, Carmustine, Carmustine Implant, Carmustine in Ethanol, Carmustine Sustained-Release Implant Wafer, Carotuximab, Carubicin, Carubicin Hydrochloride, Carzelesin, Carzinophilin, Cathelicidin LL-37, Cationic Liposome-Encapsulated Paclitaxel, Cationic Peptide Cream Cypep-1, Catumaxomab, CBP/beta-catenin Antagonist PRI-724, CBP/beta-catenin Modulator E7386, CCR2 Antagonist CCX872-B, CCR2 Antagonist PF-04136309, CCR2/CCR5 Antagonist BMS-813160, CCR4 Inhibitor FLX475, CD11b Agonist GB1275, CD123-CD33 Compound CAR T Cells, CD123-specific Targeting Module TM123, CD20-CD19 Compound CAR T Cells, CD28/ICOS Antagonist ALPN-101, CD4-specific Telomerase Peptide Vaccine UCPVax, CD40 Agonist Monoclonal Antibody CP-870;893, CD40 Agonistic Monoclonal Antibody APX005M, CD44 Targeted Agent SPL-108, CD44v6-specific CAR T-cells, CD47 Antagonist ALX148, CD73 Inhibitor AB680, CD73 Inhibitor LY3475070, CD80-Fc Fusion Protein ALPN-202, CD80-Fc Fusion Protein FPT155, CDC7 Inhibitor TAK-931, CDC7 Kinase Inhibitor BMS-863233, CDC7 Kinase Inhibitor LY3143921 Hydrate, CDC7 Kinase Inhibitor NMS-1116354, CDK Inhibitor AT7519, CDK Inhibitor R547, CDK Inhibitor SNS-032, CDK/JAK2/FLT3 Inhibitor TG02 Citrate, CDK1 Inhibitor BEY1107, CDK1/2/4 Inhibitor AG-024322, CDK2 Inhibitor PF-07104091, CDK2/4/6/FLT3 Inhibitor FN-1501, CDK2/5/9 Inhibitor CYC065, CDK4 Inhibitor P1446A-05, CDK4/6 Inhibitor, CDK4/6 Inhibitor BPI-16350, CDK4/6 Inhibitor CS3002, CDK4/6 Inhibitor FCN-437, CDK4/6 Inhibitor G1T38, CDK4/6 Inhibitor HS-10342, CDK4/6 Inhibitor SHR6390, CDK4/6 Inhibitor TQB3616, CDK7 Inhibitor CT7001, CDK7 Inhibitor SY-1365, CDK7 Inhibitor SY-5609, CDK8/19 Inhibitor SEL 120, CDK9 Inhibitor AZD4573, CEA-MUC-1-TRICOM Vaccine CV301, CEA-targeting Agent RG6123, CEBPA-targeting saRNA MTL-CEBPA Liposome, Cedazuridine, Cedazuridine/Azacitidine Combination Agent ASTX030, Cedazuridine/Decitabine Combination Agent ASTX727, Cedefingol, Cediranib, Cediranib Maleate, Celecoxib, Cell Cycle Checkpoint/DNA Repair Antagonist IC83, Cemadotin, Cemadotin Hydrochloride, Cemiplimab, Cenersen, Cenisertib, CENP-E Inhibitor GSK-923295, Ceralasertib, Ceramide Nanoliposome, Cerdulatinib, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282, Cereblon Modulator CC-90009, Cergutuzumab Amunaleukin, Ceritinib, Cesalin, cEt KRAS Antisense Oligonucleotide AZD4785, Cetrelimab, Cetuximab, Cetuximab Sarotalocan, Cetuximab-IR700 Conjugate RM-1929, Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY), Cevipabulin, Cevipabulin Fumarate, Cevipabulin Succinate, Cevostamab, cFMS Tyrosine Kinase Inhibitor ARRY-382, Chaparrin, Chaparrinone, Checkpoint Kinase Inhibitor AZD7762, Checkpoint Kinase Inhibitor XL844, Chemotherapy, Chiauranib, Chimeric Monoclonal Antibody 81C6, ChiNing Decoction, Chk1 Inhibitor CCT245737, Chk1 Inhibitor GDC-0425, Chk1 Inhibitor GDC-0575, CHK1 Inhibitor MK-8776, CHK1 Inhibitor PF-477736, Chlorambucil, Chlorodihydropyrimidine, Chloroquine, Chloroquinoxaline Sulfonamide, Chlorotoxin, Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes, Chlorozotocin, Choline Kinase Alpha Inhibitor TCD-717, CHP-NY-ESO-1 Peptide Vaccine IMF-001, Chromomycin A3, Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement, Cibisatamab, Ciclopirox Prodrug CPX-POM, Cidan Herbal Capsule, Ciforadenant, Cilengitide, Ciltacabtagene Autoleucel, Cimetidine, Cinacalcet Hydrochloride, Cinobufagin, Cinobufotalin, Cinrebafusp Alfa, Cintirorgon, Cintredekin Besudotox, Cirmtuzumab, cis-Urocanic Acid, Cisplatin, Cisplatin Liposomal, Cisplatin-E Therapeutic Implant, Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6, Citarinostat, Citatuzumab Bogatox, Cixutumumab, CK1alpha/CDK7/CDK9 Inhibitor BTX-A51, CK2-targeting Synthetic Peptide CIGB-300, CL 246738, Cladribine, Clanfenur, Clarithromycin, Class 1/4 Histone Deacetylase Inhibitor OKI-179, Clinical Trial, Clinical Trial Agent, Clioquinol, Clivatuzumab, Clodronate Disodium, Clodronic Acid, Clofarabine, Clomesone, Clomiphene, Clomiphene Citrate, Clostridium Novyi-NT Spores, Cobimetinib, Cobolimab, Cobomarsen, Codrituzumab, Coenzyme Q10, Cofetuzumab Pelidotin, Colchicine-Site Binding Agent ABT-751, Cold Contaminant-free Iobenguane I-131, Colloidal Gold-Bound Tumor Necrosis Factor, Colorectal Cancer Peptide Vaccine PolyPEPI1018, Colorectal Tumor-Associated Peptides Vaccine IMA910, Coltuximab Ravtansine, Combretastatin, Combretastatin A-1, Combretastatin A1 Diphosphate, Commensal Bacterial Strain Formulation VE800, Compound Kushen Injection, Conatumumab, Conbercept, Concentrated Lingzhi Mushroom Extract, Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011, Copanlisib, Copanlisib Hydrochloride, Copper Cu 64-ATSM, Copper Cu 67 Tyr3-octreotate, Copper Gluconate, Cord Blood Derived CAR T-Cells, Cord Blood-derived Expanded Natural Killer Cells PNK-007, Cordycepin, Cordycepin Triphosphate, Coriolus Versicolor Extract, Corticorelin Acetate, Cortisone Acetate, Cosibelimab, Cositecan, Coxsackievirus A21, Coxsackievirus V937, CpG Oligodeoxynucleotide GNKG168, Crenolanib, Crenolanib Besylate, Crizotinib, Crolibulin, Cryptophycin, Cryptophycin 52, Crystalline Genistein Formulation AXP107-11, CSF-1R Inhibitor BLZ945, CSF1R Inhibitor ABSK021, CSF1R Inhibitor DCC-3014, CSF1R Inhibitor PLX73086, CT2584 HMS, CTLA-4-directed Probody BMS-986249, Curcumin, Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110, Cusatuzumab, Custirsen Sodium, CXC Chemokine Receptor 2 Antagonist AZD5069, CXCR1/2 Inhibitor SX-682, CXCR2 Antagonist QBM076, CXCR4 Antagonist BL-8040, CXCR4 Antagonist USL311, CXCR4 Inhibitor Q-122, CXCR4 Peptide Antagonist LY2510924, CXCR4/E-selectin Antagonist GMI-1359, Cyclin-dependent Kinase 8/19 Inhibitor BCD 115, Cyclin-dependent Kinase Inhibitor PF-06873600, Cyclodextrin-Based Polymer-Camptothecin CRLX101, Cyclodisone, Cycloleucine, Cyclopentenyl Cytosine, Cyclophosphamide, Cyclophosphamide Anhydrous, Cyclosporine, CYL-02 Plasmid DNA, CYP11A1 inhibitor ODM-208, CYP11A1 Inhibitor ODM-209, CYP17 Inhibitor CFG920, CYP17 Lyase Inhibitor ASN001, CYP17/Androgen Receptor Inhibitor ODM 204, CYP17/CYP11B2 Inhibitor LAE001, Cyproterone, Cyproterone Acetate, Cytarabine, Cytarabine Monophosphate Prodrug MB07133, Cytarabine-asparagine Prodrug BST-236, Cytidine Analog RX-3117, Cytochlor, Cytokine-based Biologic Agent IRX-2, D-methionine Formulation MRX-1024, DAB389 Epidermal Growth Factor, Dabrafenib, Dabrafenib Mesylate, Dacarbazine, Dacetuzumab, DACH Polymer Platinate AP5346, DACH-Platin Micelle NC-4016, Daclizumab, Dacomitinib, Dacplatinum, Dactinomycin, Dactolisib, Dactolisib Tosylate, Dalantercept, Dalotuzumab, Daniquidone, Danusertib, Danvatirsen, Daporinad, Daratumumab, Daratumumab and Hyaluronidase-fihj, Daratumumab/rHuPH20, Darinaparsin, Darleukin, Darolutamide, Daromun, Dasatinib, Daunorubicin, Daunorubicin Citrate, Daunorubicin Hydrochloride, DEC-205/NY-ESO-1 Fusion Protein CDX-1401, Decitabine, Decitabine and Cedazuridine, Defactinib, Defactinib Hydrochloride, Deferoxamine, Deferoxamine Mesylate, Degarelix, Degarelix Acetate, Delanzomib, Delolimogene Mupadenorepvec, Demcizumab, Demecolcine, Demplatin Pegraglumer, Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466, Dendritic Cell Vaccine, Dendritic Cell-Autologous Lung Tumor Vaccine, Dendritic Cell-targeting Lentiviral Vector ID-LV305, Denenicokin, Dengue Virus Adjuvant PV-001-DV, Denibulin, Denibulin Hydrochloride, Denileukin Diftitox, Denintuzumab Mafodotin, Denosumab, Deoxycytidine Analogue TAS-109, Deoxycytidine Analogue TAS-109 Hydrochloride, Depatuxizumab, Depatuxizumab Mafodotin, Derazantinib, Deslorelin, Deslorelin Acetate, Detirelix, Detorubicin, Deuteporfin, Deuterated Enzalutamide, Devimistat, Dexamethason, Dexamethasone, Dexamethasone Phosphate, Dexamethasone Sodium Phosphate, Dexanabinol, Dexrazoxane, Dexrazoxane Hydrochloride, Dezaguanine, Dezaguanine Mesylate, Dezapelisib, DHA-Paclitaxel, DHEA Mustard, DI-Leu16-IL2 Immunocytokine, Dianhydrogalactitol, Diarylsulfonylurea Compound ILX-295501, Diazepinomicin, Diaziquone, Diazooxonorleucine, Dibrospidium Chloride, Dichloroallyl Lawsone, Dicycloplatin, Didox, Dienogest, Diethylnorspermine, Digitoxin, Digoxin, Dihydro-5-Azacytidine, Dihydrolenperone, Dihydroorotate Dehydrogenase Inhibitor AG-636, Dihydroorotate Dehydrogenase Inhibitor BAY2402234, Diindolylmethane, Dilpacimab, Dimethylmyleran, Dinaciclib, Dinutuximab, Dioscorea nipponica Makino Extract DNE3, Diphencyprone, Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777, Ditiocarb, DKK1-Neutralizing Monoclonal Antibody DKN-01, DM-CHOC-PEN, DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015, DNA Interference Oligonucleotide PNT2258, DNA Minor Groove Binding Agent SG2000, DNA Plasmid Encoding Interleukin-12 INO-9012, DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151, DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457, DNA Vaccine VB10.16, DNA-dependent Protein Kinase Inhibitor VX-984, DNA-PK inhibitor AZD7648, DNA-PK/PI3K-delta Inhibitor BR101801, DNA-PK/TOR Kinase Inhibitor CC-115, DNMT1 Inhibitor NTX-301, DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98, Docetaxel, Docetaxel Anhydrous, Docetaxel Emulsion ANX-514, Docetaxel Formulation CKD-810, Docetaxel Lipid Microspheres, Docetaxel Nanoparticle CPC634, Docetaxel Polymeric Micelles, Docetaxel-loaded Nanopharmaceutical CRLX301, Docetaxel-PNP, Docetaxel/Ritonavir, Dociparstat sodium, Dolastatin 10, Dolastatin 15, Domatinostat, Donafenib, Dopamine-Somatostatin Chimeric Molecule BIM-23A760, Dostarlimab, Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703, Dovitinib, Dovitinib Lactate, Doxazosin, Doxercalciferol, Doxifluridine, Doxorubicin, Doxorubicin Hydrochloride, Doxorubicin Prodrug L-377;202, Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370, Doxorubicin-Eluting Beads, Doxorubicin-HPMA Conjugate, Doxorubicin-loaded EGFR-targeting Nanocells, Doxorubicin-Magnetic Targeted Carrier Complex, DPT/BCG/Measles/Serratia/Pneumococcus Vaccine, DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine, DPX-E7 HPV Vaccine, DR5 HexaBody Agonist GEN1029, DR5-targeting Tetrameric Nanobody Agonist TAS266, Dromostanolone Propionate, Drozitumab, DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555, Dual IGF-1R/InsR Inhibitor BMS-754807, Dual Variable Domain Immunoglobulin ABT-165, Dual-affinity B7-H3/CD3-targeted Protein MGD009, Dubermatinib, Duborimycin, Dulanermin, Duligotuzumab, Dupilumab, Durvalumab, Dusigitumab, dUTPase/DPD Inhibitor TAS-114, Duvelisib, Duvortuxizumab, Dynemicin, Dynemicin A, E2F1 Pathway Activator ARQ 171, EBNA-1 inhibitor VK-2019, Echinomycin, Ecromeximab, Edatrexate, Edelfosine, Edicotinib, Edodekin alfa, Edotecarin, Edrecolomab, EED Inhibitor MAK683, Efatutazone, Efatutazone Dihydrochloride, Efizonerimod, Eflornithine, Eflornithine Hydrochloride, Eftilagimod Alpha, Eftozanermin Alfa, Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205, Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621, EGb761, EGFR Antagonist Hemay022, EGFR Antisense DNA BB-401, EGFR Inhibitor AZD3759, EGFR Inhibitor BIBX 1382, EGFR Inhibitor DBPR112, EGFR Inhibitor PD-168393, EGFR Inhibitor TY-9591, EGFR Mutant-selective Inhibitor TQB3804, EGFR Mutant-specific Inhibitor BPI-7711, EGFR Mutant-specific Inhibitor CK-101, EGFR Mutant-specific Inhibitor D-0316, EGFR Mutant-specific Inhibitor ZN-e4, EGFR T790M Antagonist BPI-15086, EGFR T790M Inhibitor HS-10296, EGFR/EGFRvIII Inhibitor WSD0922-FU, EGFR/FLT3/Abl Inhibitor SKLB1028, EGFR/HER1/HER2 Inhibitor PKI166, EGFR/HER2 Inhibitor AP32788, EGFR/HER2 Inhibitor AV-412, EGFR/HER2 Inhibitor DZD9008, EGFR/HER2 Kinase Inhibitor TAK-285, EGFR/TGFb Fusion Monoclonal Antibody BCA101, EGFR/VEGFR/RET Inhibitor HA121-28, Eicosapentaenoic Acid, eIF4E Antisense Oligonucleotide ISIS 183750, Elacestrant, Elacytarabine, Elagolix, Elbasvir/Grazoprevir, Elesclomol, Elesclomol Sodium, Elgemtumab, Elinafide, Elisidepsin, Elliptinium, Elliptinium Acetate, Elmustine, Elotuzumab, Elpamotide, Elsamitrucin, Eltanexor, Emactuzumab, Emapalumab, Emepepimut-S, Emibetuzumab, Emitefur, Emofolin Sodium, Empesertib, Enadenotucirev, Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A, Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641, Enasidenib, Enasidenib Mesylate, Enavatuzumab, Encapsulated Rapamycin, Encelimab, Enclomiphene, Enclomiphene Citrate, Encorafenib, Endothelin B Receptor Blocker ENB 003, Endothelin Receptor Type A Antagonist YM598, Enfortumab Vedotin, Engineered Human Umbilical Vein Endothelial Cells AB-205, Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240, Engineered Toxin Body Targeting CD38 TAK-169, Engineered Toxin Body Targeting HER2 MT-5111, Eniluracil/5-FU Combination Tablet, Enloplatin, Enoblituzumab, Enobosarm, Enoticumab, Enpromate, Ensartinib, Ensituximab, Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride, Enterococcus gallinarum Strain MRx0518, Entinostat, Entolimod, Entospletinib, Entrectinib, Envafolimab, Enzalutamide, Enzastaurin, Enzastaurin Hydrochloride, EP2/EP4 Antagonist TPST-1495, EP4 Antagonist INV-1120, EP4 Antagonist ONO-4578, Epacadostat, Epcoritamab, EphA2-targeting Bicycle Toxin Conjugate BT5528, Epipodophyllotoxin Analog GL331, Epipropidine, Epirubicin, Epirubicin Hydrochloride, Epitinib Succinate, Epitiostanol, Epothilone Analog UTD1, Epothilone KOS-1584, Epratuzumab, Epratuzumab-cys-tesirine, ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471, ERa36 Modulator Icaritin, Erastin Analogue PRLX 93936, Erbulozole, Erdafitinib, Eribulin, Eribulin Mesylate, ERK 1/2 Inhibitor ASTX029, ERK Inhibitor CC-90003, ERK Inhibitor GDC-0994, ERK Inhibitor LTT462, ERK Inhibitor MK-8353, ERK1/2 Inhibitor ASN007, ERK1/2 Inhibitor HH2710, ERK1/2 Inhibitor JSI-1187, ERK1/2 Inhibitor KO-947, ERK1/2 Inhibitor LY3214996, Erlotinib, Erlotinib Hydrochloride, Ertumaxomab, Erythrocyte-encapsulated L-asparaginase Suspension, Esorubicin, Esorubicin Hydrochloride, Esperamicin A1, Essiac, Esterified Estrogens, Estradiol Valerate, Estramustine, Estramustine Phosphate Sodium, Estrogen Receptor Agonist GTx-758, Estrogens; Conjugated, Etalocib, Etanercept, Etanidazole, Etaracizumab, Etarotene, Ethaselen, Ethinyl Estradiol, Ethyleneimine, Ethylnitrosourea, Etidronate-Cytarabine Conjugate MBC-11, Etigilimab, Etirinotecan Pegol, Etoglucid, Etoposide, Etoposide Phosphate, Etoposide Toniribate, Etoprine, Etoricoxib, Ets-family Transcription Factor Inhibitor TK216, Everolimus, Everolimus Tablets for Oral Suspension, Evofosfamide, Ex Vivo-expanded Autologous T Cells IMA101, Exatecan Mesylate, Exatecan Mesylate Anhydrous, Exemestane, Exicorilant, Exisulind, Extended Release Flucytosine, Extended Release Metformin Hydrochloride, Extended-release Onapristone, Ezabenlimab, EZH1/2 Inhibitor DS-3201, EZH1/2 Inhibitor HH2853, EZH2 inhibitor CPI-0209, EZH2 Inhibitor CPI-1205, EZH2 Inhibitor PF-06821497, EZH2 Inhibitor SHR2554, F16-IL2 Fusion Protein, FACT Complex-targeting Curaxin CBL0137, Factor VII-targeting Immunoconjugate Protein ICON-1, Factor VIIa Inhibitor PCI-27483, Fadraciclib, Fadrozole Hydrochloride, FAK Inhibitor GSK2256098, FAK Inhibitor PF-00562271, FAK Inhibitor VS-4718, FAK/ALK/ROS1 Inhibitor APG-2449, Falimarev, Famitinib, FAP/4-1BB-targeting DARPin MP0310, FAP/4-1BB-targeting Fusion Protein RO7122290, Farletuzumab, Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123, Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells, Fas Receptor Agonist APO010, Fascin Inhibitor NP-G2-044, FASN Inhibitor TVB-2640, Favezelimab, Fazarabine, Fc-engineered Anti-CD40 Agonist Antibody 2141-V11, Febuxostat, Fedratinib, Fedratinib Hydrochloride, Feladilimab, Felzartamab, Fenebrutinib, Fenretinide, Fenretinide Lipid Matrix, Fenretinide Phospholipid Suspension ST-001, FGF Receptor Antagonist HGS1036, FGF/FGFR Pathway Inhibitor E7090, FGFR Inhibitor ASP5878, FGFR Inhibitor AZD4547, FGFR Inhibitor CPL304110, FGFR Inhibitor Debio 1347, FGFR Inhibitor TAS-120, FGFR/CSF-1R Inhibitor 3D185, FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999, FGFR1/2/3 Inhibitor HMPL-453, FGFR2 Inhibitor RLY-4008, FGFR4 Antagonist INCB062079, FGFR4 Inhibitor BLU 9931, FGFR4 Inhibitor FGF401, FGFR4 Inhibitor H3B-6527, FGFR4 Inhibitor ICP-105, Fianlimab, Fibromun, Ficlatuzumab, Figitumumab, Filanesib, Filgotinib, Filgrastim, Fimaporfin A, Fimepinostat, Firtecan Pegol, Fisogatinib, Flanvotumab, Flotetuzumab, Floxuridine, FLT3 Inhibitor FF-10101 Succinate, FLT3 Inhibitor HM43239, FLT3 Inhibitor SKI-G-801, Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01, FLT3 Tyrosine Kinase Inhibitor TTT-3002, FLT3/ABL/Aurora Kinase Inhibitor KW-2449, FLT3/CDK4/6 Inhibitor FLX925, FLT3/FGFR Dual Kinase Inhibitor MAX-40279, FLT3/KIT Kinase Inhibitor AKN-028, FLT3/KIT/CSF1R Inhibitor NMS-03592088, Flt3/MerTK Inhibitor MRX-2843, Fludarabine, Fludarabine Phosphate, Flumatinib, Flumatinib Mesylate, Fluorine F 18 Ara-G, Fluorodopan, Fluorouracil, Fluorouracil Implant, Fluorouracil-E Therapeutic Implant, Fluoxymesterone, Flutamide, Fluvastatin, Fluvastatin Sodium, Fluzoparib, FMS Inhibitor JNJ-40346527, Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate, Folate Receptor Targeted Epothilone BMS753493, Folate Receptor-Targeted Tubulysin Conjugate EC1456, Folate Receptor-Targeted Vinca Alkaloid EC0489, Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225, Folate-FITC, Folic Acid, Folitixorin, Foretinib, Foritinib Succinate, Formestane, Forodesine Hydrochloride, Fosaprepitant, Fosbretabulin, Fosbretabulin Disodium, Fosbretabulin Tromethamine, Fosgemcitabine Palabenamide, Fosifloxuridine Nafalbenamide, Foslinanib, Foslinanib Disodium, Fosquidone, Fostriecin, Fotemustine, Fotretamine, FPV Vaccine CV301, FPV-Brachyury-TRICOM Vaccine, Fresolimumab, Fruquintinib, Fulvestrant, Fumagillin-Derived Polymer Conjugate XMT-1107, Fursultiamine, Futibatinib, Futuximab, Futuximab/Modotuximab Mixture, G Protein-coupled Estrogen Receptor Agonist LNS8801, G-Quadruplex Stabilizer BMVC, Galamustine, Galarubicin, Galectin Inhibitor GR-MD-02, Galectin-1 Inhibitor OTX008, Galeterone, Galiximab, Gallium-based Bone Resorption Inhibitor AP-002, Galocitabine, Galunisertib, Gamboge Resin Extract TSB-9-W1, Gamma-delta Tocotrienol, Gamma-Secretase Inhibitor LY3039478, Gamma-Secretase Inhibitor RO4929097, Gandotinib, Ganetespib, Ganglioside GD2, Ganglioside GM2, Ganitumab, Ganoderma lucidum Spores Powder Capsule, Garlic, Gastrin Immunotoxin, Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360, Gataparsen Sodium, Gatipotuzumab, GBM Antigens and Alloantigens Immunotherapeutic Vaccine, Gedatolisib, Gefitinib, Geldanamycin, Gelonin, Gemcitabine, Gemcitabine Elaidate, Gemcitabine Hydrochloride, Gemcitabine Hydrochloride Emulsion, Gemcitabine Prodrug LY2334737, Gemcitabine-Phosphoramidate Hydrochloride NUC-1031, Gemcitabine-Releasing Intravesical System, Gemtuzumab Ozogamicin, Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum, Genistein, Gentuximab, Geranylgeranyltransferase I Inhibitor, GI-4000 Vaccine, Giloralimab, Gilteritinib, Gilteritinib Fumarate, Gimatecan, Gimeracil, Ginsenoside Rg3 Capsule, Giredestrant, Girentuximab, Girodazole, GITR Agonist MEDI1873, Givinostat, Glasdegib, Glasdegib Maleate, Glaucarubolone, Glecaprevir/Pibrentasvir, Glembatumumab Vedotin, Glesatinib, Glioblastoma Cancer Vaccine ERC1671, Glioblastoma Multiforme Multipeptide Vaccine IMA950, Glioma Lysate Vaccine GBM6-AD, Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701, Globo H-DT Vaccine OBI-833, Glofitamab, Glucarpidase, Glucocorticoid Receptor Antagonist ORIC-101, Glufosfamide, Glumetinib, Glutaminase Inhibitor CB-839, Glutaminase Inhibitor CB-839 Hydrochloride, Glutaminase Inhibitor IPN60090, Glutamine Antagonist DRP-104, Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101, Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01, Glycooptimized Trastuzumab-GEX, GM-CSF-encoding Oncolytic Adenovirus CGTG-102, Gold Sodium Thiomalate, Golnerminogene Pradenovec, Golotimod, Golvatinib, Gonadotropin-releasing Hormone Analog, Goserelin, Goserelin Acetate, Goserelin Acetate Extended-release Microspheres LY01005, Gossypol, Gossypol Acetic Acid, Grapiprant, Green Tea Extract-based Antioxidant Supplement, GS/pan-Notch Inhibitor AL101, GS/pan-Notch Inhibitor BMS-986115, GSK-3 Inhibitor 9-ING-41, GSK-3 Inhibitor LY2090314, Guadecitabine, Guanabenz Acetate, Guselkumab, Gusperimus Trihydrochloride, Gutolactone, H-ras Antisense Oligodeoxynucleotide ISIS 2503, H1299 Tumor Cell Lysate Vaccine, HAAH Lambda phage Vaccine SNS-301, Hafnium Oxide-containing Nanoparticles NBTXR3, Halichondrin Analogue E7130, Halichondrin B, Halofuginone, Halofuginone Hydrobromide, HCV DNA Vaccine INO-8000, HDAC Class I/IIb Inhibitor HG146, HDAC Inhibitor AR-42, HDAC inhibitor CG200745, HDAC Inhibitor CHR-2845, HDAC Inhibitor CKD-581, HDAC Inhibitor CXD101, HDAC Inhibitor MPT0E028, HDAC Inhibitor OBP-801, HDAC/EGFR/HER2 Inhibitor CUDC-101, HDAC6 Inhibitor KA2507, HDAC8 Inhibitor NBM-BMX, HDM2 Inhibitor HDM201, HDM2 Inhibitor MK-8242, Hedgehog Inhibitor IPI-609, Hematoporphyrin Derivative, Hemiasterlin Analog E7974, Henatinib Maleate, Heparan Sulfate Glycosaminoglycan Mimetic M402, Heparin Derivative SST0001, HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131, HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901, HER2 Inhibitor CP-724;714, HER2 Inhibitor DZD1516, HER2 Inhibitor TAS0728, HER2 Tri-specific Natural Killer Cell Engager DF1001, HER2-directed TLR8 Agonist SBT6050, HER2-targeted DARPin MP0274, HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302, HER2-targeting Antibody Fc Fragment FS102, Herba Scutellaria Barbata, Herbimycin, Heterodimeric Interleukin-15, Hexamethylene Bisacetamide, Hexaminolevulinate, Hexylresorcinol, HIF-1alpha Inhibitor PX-478, HIF-2alpha Inhibitor PT2385, HIF-2alpha Inhibitor PT2977, HIF2a RNAi ARO-HIF2, Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126, Histrelin Acetate, HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001, HLA-A*2402-Restricted Multipeptide Vaccine S-488410, HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201, HM2/MMAE Antibody-Drug Conjugate ALT-P7, Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine, Holmium Ho 166 Poly(L-Lactic Acid) Microspheres, Hormone Therapy, HPPH, HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202, HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c, HPV DNA Plasmids Therapeutic Vaccine VGX-3100, HPV E6/E7 DNA Vaccine GX-188E, HPV E6/E7-encoding Arenavirus Vaccine HB-201, HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C, HPV-16 E6 Peptides Vaccine/Candida albicans Extract, HPV-6-targeting Immunotherapeutic Vaccine INO-3106, HPV16 E7-specific HLA-A*02:01-restricted IgG1-Fc Fusion Protein CUE-101, HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN, HPV6/11-targeted DNA Plasmid Vaccine INO-3107, Hsp90 Antagonist KW-2478, Hsp90 Inhibitor AB-010, Hsp90 Inhibitor BIIB021, Hsp90 Inhibitor BIIB028, Hsp90 Inhibitor Debio 0932, Hsp90 Inhibitor DS-2248, Hsp90 Inhibitor HSP990, Hsp90 Inhibitor MPC-3100, Hsp90 Inhibitor PU-H71, Hsp90 Inhibitor SNX-5422 Mesylate, Hsp90 Inhibitor SNX-5542 Mesylate, Hsp90 Inhibitor TQB3474, Hsp90 Inhibitor XL888, Hsp90-targeted Photosensitizer HS-201, HSP90-targeted SN-38 Conjugate PEN-866, HSP90alpha/beta Inhibitor TAS-116, hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301, hTERT Vaccine V934/V935, hTERT-encoding DNA Vaccine INVAC-1, Hu14.18-IL2 Fusion Protein EMD 273063, HuaChanSu, Huaier Extract Granule, Huang Lian, huBC1-huIL12 Fusion Protein AS1409, Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736, Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104, Human MOAB LICO 28a32, Human Monoclonal Antibody 216, Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307, Human Papillomavirus 16 E7 Peptide/Padre 965.10, Hyaluronidase-zzxf/Pertuzumab/Trastuzumab, Hycanthone, Hydralazine Hydrochloride, Hydrocortisone Sodium Succinate, Hydroxychloroquine, Hydroxyprogesterone Caproate, Hydroxytyrosol, Hydroxyurea, Hypericin, Hypoxia-activated Prodrug TH-4000, I 131 Antiferritin Immunoglobulin, I 131 Monoclonal Antibody A33, I 131 Monoclonal Antibody CC49, I 131 Monoclonal Antibody F19, I 131 Monoclonal Antibody Lym-1, Iadademstat, Ianalumab, IAP Inhibitor APG-1387, IAP Inhibitor AT-406, IAP Inhibitor HGS1029, Ibandronate Sodium, Iberdomide, Iboctadekin, Ibritumomab Tiuxetan, Ibrutinib, Icotinib Hydrochloride, Icrucumab, ICT-121 Dendritic Cell Vaccine, Idarubicin, Idarubicin Hydrochloride, Idarubicin-Eluting Beads, Idasanutlin, Idecabtagene Vicleucel, Idelalisib, Idetrexed, IDH1 Mutant Inhibitor LY3410738, IDH1(R132) Inhibitor IDH305, IDH1R132H-Specific Peptide Vaccine PEPIDH1M, Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020, IDO Peptide Vaccine IO102, IDO-1 Inhibitor LY3381916, IDO/TDO Inhibitor HTI-1090, IDO/TDO Inhibitor LY-01013, IDO1 Inhibitor KHK2455, IDO1 Inhibitor MK-7162, IDO1 Inhibitor PF-06840003, IDO1/TDO2 Inhibitor DN1406131, IDO1/TDO2 Inhibitor M4112, Idronoxil, Idronoxil Suppository NOX66, Ieramilimab, Ifabotuzumab, Ifetroban, Ifosfamide, IGF-1R Inhibitor, IGF-1R Inhibitor PL225B, IGF-1R/IR Inhibitor KW-2450, IGF-methotrexate Conjugate, IL-10 Immunomodulator MK-1966, IL-12-expressing HSV-1 NSC 733972, IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051, IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000, IL-2 Recombinant Fusion Protein ALT-801, IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1, IL4-Pseudomonas Exotoxin Fusion Protein MDNA55, Ilginatinib, Ilixadencel, Iloprost, Ilorasertib, Imalumab, Imaradenant, Imatinib, Imatinib Mesylate, Imetelstat, Imetelstat Sodium, Imexon, Imgatuzumab, Imidazole Mustard, Imidazole-Pyrazole, Imifoplatin, Imipramine Blue, Imiquimod, Immediate-release Onapristone, Immediate-release Tablet Afuresertib, Immune Checkpoint Inhibitor ASP8374, Immunoconjugate RO5479599, Immunocytokine NHS-IL12, Immunocytokine NHS-IL2-LT, Immunomodulator LAM-003, Immunomodulator OHR/AVR118, Immunomodulatory Agent CC-11006, Immunomodulatory Oligonucleotide HYB2055, Immunotherapeutic Combination Product CMB305, Immunotherapeutic GSK1572932A, Immunotherapy Regimen MKC-1106-MT, Immunotoxin CMD-193, IMT-1012 Immunotherapeutic Vaccine, Inactivated Oncolytic Virus Particle GEN0101, Inalimarev, Incyclinide, Indatuximab Ravtansine, Indibulin, Indicine-N-Oxide, Indisulam, Individualized MVA-based Vaccine TG4050, Indocyanine Green-labeled Polymeric Micelles ONM-100, Indole-3-Carbinol, Indomethacin, Indoximod, Indoximod Prodrug NLG802, Indusatumab Vedotin, Inebilizumab, Inecalcitol, Infigratinib, Infigratinib Mesylate, Infliximab, Ingenol Mebutate, Ingenol Mebutate Gel, Iniparib, iNKT Cell Agonist ABX196, Innate Immunostimulator rBBX-01, INO-1001, Inodiftagene Vixteplasmid, iNOS Dimerization Inhibitor ASP9853, Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01, Inosine Monophosphate Dehydrogenase Inhibitor AVN944, Inositol, Inotuzumab Ozogamicin, Inproquone, Integrin alpha-2 Inhibitor E7820, Integrin Receptor Antagonist GLPG0187, Interferon, Interferon Alfa-2B, Interferon Alfa-N1, Interferon Alfa-N3, Interferon Alfacon-1, Interferon Beta-1A, Interferon Gamma-1b, Interferon-gamma-expressing Adenovirus Vaccine ASN-002, Interleukin Therapy, Interleukin-12-Fc Fusion Protein DF6002, Interleukin-15 Agonist Fusion Protein SHR1501, Interleukin-15 Fusion Protein BJ-001, Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306, Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101, Interleukin-2 Liposome, Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230, Intetumumab, Intiquinatine, Intoplicine, Inulin, Iobenguane I-131, Iodine I 124 Monoclonal Antibody A33, Iodine I 124 Monoclonal Antibody M5A, Iodine I 125-Anti-EGFR-425 Monoclonal Antibody, Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP, Iodine I 131 Apamistamab, Iodine I 131 Derlotuximab Biotin, Iodine I 131 Ethiodized Oil, Iodine I 131 IPA, Iodine I 131 MIP-1095, Iodine I 131 Monoclonal Antibody 81C6, Iodine I 131 Monoclonal Antibody BC8, Iodine I 131 Monoclonal Antibody CC49-deltaCH2, Iodine I 131 Monoclonal Antibody F16SIP, Iodine I 131 Monoclonal Antibody G-250, Iodine I 131 Monoclonal Antibody muJ591, Iodine I 131 Omburtamab, Iodine I 131 Rituximab, Iodine I 131 Tenatumomab, Iodine I 131 TM-601, Iodine I 131 Tositumomab, Iodine I-131, Ioflubenzamide I-131, Ionomycin, Ipafricept, Ipatasertib, Ipilimumab, Ipomeanol, Iproplatin, iPSC-derived CD16-expressing Natural Killer Cells FT516, iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596, iPSC-derived Natural Killer Cells FT500, IRAK4 Inhibitor CA-4948, Iratumumab, Iridium Ir 192, Irinotecan, Irinotecan Hydrochloride, Irinotecan Sucrosofate, Irinotecan-Eluting Beads, Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet, Irofulven, Iroplact, Irosustat, Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130, Isatuximab, Iso-fludelone, Isobrucein B, Isocoumarin NM-3, Isotretinoin, Ispinesib, Ispinesib Mesylate, ISS 1018 CpG Oligodeoxynucleotide, Istiratumab, Itacitinib, Itacitinib Adipate, ITK Inhibitor CPI-818, Itraconazole, Itraconazole Dispersion In Polymer Matrix, Ivaltinostat, Ivosidenib, Ivuxolimab, Ixabepilone, Ixazomib, Ixazomib Citrate, JAK Inhibitor, JAK Inhibitor INCB047986, JAK1 Inhibitor AZD4205, JAK1 Inhibitor INCB052793, JAK2 Inhibitor AZD1480, JAK2 Inhibitor BMS-911543, JAK2 Inhibitor XL019, JAK2/Src Inhibitor NS-018, Jin Fu Kang, JNK Inhibitor CC-401, Kanglaite, Kanitinib, Ketoconazole, Ketotrexate, KRAS G12C Inhibitor GDC-6036, KRAS G12C Inhibitor LY3499446, KRAS G12C Inhibitor MRTX849, KRAS Mutant-targeting AMG 510, KRAS-MAPK Signaling Pathway Inhibitor JAB-3312, KRASG12C Inhibitor JNJ-74699157, KRN5500, KSP Inhibitor AZD4877, KSP Inhibitor SB-743921, Kunecatechins Ointment, L-Gossypol, L-methylfolate, Labetuzumab Govitecan, Lactoferrin-derived Lytic Peptide LTX-315, Lacutamab, Ladiratuzumab Vedotin, Ladirubicin, Laetrile, LAIR-2 Fusion Protein NC410, Landogrozumab, Laniquidar, Lanreotide Acetate, Lapachone, Lapatinib, Lapatinib Ditosylate, Laprituximab Emtansine, Lapuleucel-T, Laromustine, Larotaxel, Larotinib Mesylate, Larotrectinib, Larotrectinib Sulfate, Lavendustin A, Lazertinib, Lead Pb 212 TCMC-trastuzumab, Lefitolimod, Leflunomide, Lenalidomide, Lenalidomide Analog KPG-121, Lentinan, Lenvatinib, Lenvatinib Mesylate, Lenzilumab, Lerociclib, Lestaurtinib, Letetresgene Autoleucel, Letolizumab, Letrozole, Leucovorin, Leucovorin Calcium, Leuprolide, Leuprolide Acetate, Leuprolide Mesylate Injectable Suspension, Leurubicin, Levetiracetam, Levoleucovorin Calcium, Levothyroxine, Levothyroxine Sodium, Lexatumumab, Lexibulin, Liarozole, Liarozole Fumarate, Liarozole Hydrochloride, Licartin, Licorice, Lifastuzumab Vedotin, Lifileucel, Lifirafenib, Light-activated AU-011, Light-Emitting Oncolytic Vaccinia Virus GL-ONC1, Lilotomab, Limonene; (+)-, Limonene; (+/-)-, Linifanib, Linoleyl Carbonate-Paclitaxel, Linperlisib, Linrodostat, Linsitinib, Lintuzumab, Liothyronine I-131, Liothyronine Sodium, Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1, Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191, Lipid Nanoparticle Encapsulated OX40L mRNA-2416, Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006, Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752, Liposomal Bcl-2 Antisense Oligonucleotide BP1002, Liposomal c-raf Antisense Oligonucleotide, Liposomal Curcumin, Liposomal Cytarabine, Liposomal Daunorubicin Citrate, Liposomal Docetaxel, Liposomal Eribulin Mesylate, Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101, Liposomal Irinotecan, Liposomal Mitoxantrone Hydrochloride, Liposomal MUC1/PET-lipid A Vaccine ONT-10, Liposomal NDDP, Liposomal Rhenium Re 186, Liposomal SN-38, Liposomal Topotecan FF-10850, Liposomal Vinorelbine, Liposomal Vinorelbine Tartrate, Liposome, Liposome-encapsulated Daunorubicin-Cytarabine, Liposome-Encapsulated Doxorubicin Citrate, Liposome-encapsulated miR-34 Mimic MRX34, Liposome-encapsulated OSI-7904, Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94, Liposome-encapsulated TAAs mRNA Vaccine W_ova1, Lirilumab, Lisavanbulin, Lisocabtagene Maraleucel, Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142, Litronesib, Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809, Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207, Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623, Liver X Receptor beta Agonist RGX-104, Lm-tLLO-neoantigens Vaccine ADXS-NEO, LMB-1 Immunotoxin, LMB-2 Immunotoxin, LMB-7 Immunotoxin, LMB-9 Immunotoxin, LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164, LMP-2:340-349 Peptide Vaccine, LMP-2:419-427 Peptide Vaccine, LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes, LMP7 Inhibitor M3258, Lobaplatin, Lodapolimab, Lometrexol, Lometrexol Sodium, Lomustine, Lonafarnib, Loncastuximab Tesirine, Long Peptide Vaccine 7, Long-acting Release Pasireotide, Lontucirev, Lorlatinib, Lorukafusp alfa, Lorvotuzumab Mertansine, Losatuxizumab Vedotin, Losoxantrone, Losoxantrone Hydrochloride, Lovastatin, LOXL2 Inhibitor PAT-1251, LRP5 Antagonist BI 905681, LRP5/6 Antagonist BI 905677, LSD1 Inhibitor CC-90011, LSD1 Inhibitor GSK2879552, LSD1 Inhibitor IMG-7289, LSD1 Inhibitor RO7051790, LSD1 Inhibitor SYHA1807, Lucanthone, Lucatumumab, Lucitanib, Luminespib, Luminespib Mesylate, Lumretuzumab, Lung-targeted Immunomodulator QBKPN, Lupartumab Amadotin, Lurbinectedin, Lurtotecan, Lurtotecan Liposome, Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1, Lutetium Lu 177 DOTA-biotin, Lutetium Lu 177 DOTA-N3-CTT1403, Lutetium Lu 177 DOTA-Tetulomab, Lutetium Lu 177 Dotatate, Lutetium Lu 177 Lilotomab-satetraxetan, Lutetium Lu 177 Monoclonal Antibody CC49, Lutetium Lu 177 Monoclonal Antibody J591, Lutetium Lu 177 PP-F11N, Lutetium Lu 177 Satoreotide Tetraxetan, Lutetium Lu 177-DOTA-EB-TATE, Lutetium Lu 177-DTPA-omburtamab, Lutetium Lu 177-Edotreotide, Lutetium Lu 177-NeoB, Lutetium Lu 177-PSMA-617, Lutetium Lu-177 Capromab, Lutetium Lu-177 Girentuximab, Lutetium Lu-177 PSMA-R2, Lutetium Lu-177 Rituximab, LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1, Lyophilized Black Raspberry Lozenge, Lyophilized Black Raspberry Saliva Substitute, Lysine-specific Demethylase 1 Inhibitor INCB059872, Lyso-Thermosensitive Liposome Doxorubicin, Maackia amurensis Seed Lectin, Macimorelin, Macitentan, Macrocycle-bridged STING Agonist E7766, Maekmoondong-tang, Mafosfamide, MAGE-10.A2, MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells, MAGE-A3 Multipeptide Vaccine GL-0817, MAGE-A3 Peptide Vaccine, MAGE-A3-specific Immunotherapeutic GSK 2132231A, MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201, Magnesium Valproate, Magrolimab, MALT1 Inhibitor JNJ-67856633, Manelimab, Mannosulfan, Mannosylerythritol Lipid, Mapatumumab, Maraba Oncolytic Virus Expressing Mutant HPV E6/E7, Marcellomycin, MARCKS Protein Inhibitor BIO-11006, Margetuximab, Marimastat, Marizomib, Masitinib Mesylate, Masoprocol, MAT2A Inhibitor AG-270, Matrix Metalloproteinase Inhibitor MMI270, Matuzumab, Mavelertinib, Mavorixafor, Maytansine, MCL-1 Inhibitor ABBV-467, MCL-1 Inhibitor AMG 176, MCL-1 inhibitor AMG 397, Mcl-1 Inhibitor AZD5991, Mcl-1 Inhibitor MIK665, MDM2 Antagonist ASTX295, MDM2 Antagonist RO5045337, MDM2 Antagonist RO6839921, MDM2 Inhibitor AMG-232, MDM2 Inhibitor AMGMDS3, MDM2 Inhibitor BI 907828, MDM2 Inhibitor KRT-232, MDM2/MDMX Inhibitor ALRN-6924, MDR Modulator CBT-1, Mechlorethamine, Mechlorethamine Hydrochloride, Mechlorethamine Hydrochloride Gel, Medorubicin, Medroxyprogesterone, Medroxyprogesterone Acetate, Megestrol Acetate, MEK 1/2 Inhibitor AS703988/MSC2015103B, MEK 1/2 Inhibitor FCN-159, MEK Inhibitor AZD8330, MEK Inhibitor CI-1040, MEK inhibitor CS3006, MEK Inhibitor GDC-0623, MEK Inhibitor HL-085, MEK Inhibitor PD0325901, MEK Inhibitor RO4987655, MEK Inhibitor SHR 7390, MEK Inhibitor TAK-733, MEK Inhibitor WX-554, MEK-1/MEKK-1 Inhibitor E6201, MEK/Aurora Kinase Inhibitor BI 847325, Melanoma Monoclonal Antibody hIgG2A, Melanoma TRP2 CTL Epitope Vaccine SCIB1, Melapuldencel-T, MELK Inhibitor OTS167, Melphalan, Melphalan Flufenamide, Melphalan Hydrochloride, Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex, Membrane-Disrupting Peptide EP-100, Menatetrenone, Menin-MLL Interaction Inhibitor SNDX-5613, Menogaril, Merbarone, Mercaptopurine, Mercaptopurine Anhydrous, Mercaptopurine Oral Suspension, Merestinib, Mesna, Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536, MET Kinase Inhibitor OMO-1, MET Tyrosine Kinase Inhibitor BMS-777607, MET Tyrosine Kinase Inhibitor EMD 1204831, MET Tyrosine Kinase Inhibitor PF-04217903, MET Tyrosine Kinase Inhibitor SAR125844, MET Tyrosine Kinase Inhibitor SGX523, MET x MET Bispecific Antibody REGN5093, Metamelfalan, MetAP2 Inhibitor APL-1202, MetAP2 Inhibitor SDX-7320, Metarrestin, Metatinib Tromethamine, Metformin, Metformin Hydrochloride, Methanol Extraction Residue of BCG, Methazolamide, Methionine Aminopeptidase 2 Inhibitor M8891, Methionine Aminopeptidase 2 Inhibitor PPI-2458, Methotrexate, Methotrexate Sodium, Methotrexate-E Therapeutic Implant, Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles, Methoxsalen, Methoxyamine, Methoxyamine Hydrochloride, Methyl-5-Aminolevulinate Hydrochloride Cream, Methylcantharidimide, Methylmercaptopurine Riboside, Methylprednisolone, Methylprednisolone Acetate, Methylprednisolone Sodium Succinate, Methylselenocysteine, Methyltestosterone, Metoprine, Mevociclib, Mezagitamab, Mibefradil, Mibefradil Dihydrochloride, Micellar Nanoparticle-encapsulated Epirubicin, Micro Needle Array-Doxorubicin, Microbiome GEN-001, Microbiome-derived Peptide Vaccine EO2401, Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300, Microtubule Inhibitor SCB01A, Midostaurin, Mifamurtide, Mifepristone, Milademetan Tosylate, Milataxel, Milatuzumab, Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110, Milciclib Maleate, Milk Thistle, Miltefosine, Minretumomab, Mipsagargin, Miptenalimab, Mirabegron, Miransertib, Mirdametinib, Mirvetuximab Soravtansine, Mirzotamab Clezutoclax, Misonidazole, Mistletoe Extract, Mitazalimab, Mitindomide, Mitobronitol, Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101, Mitoclomine, Mitoflaxone, Mitoguazone, Mitoguazone Dihydrochloride, Mitolactol, Mitomycin, Mitomycin A, Mitomycin B, Mitomycin C Analog KW-2149, Mitosis Inhibitor T 1101 Tosylate, Mitotane, Mitotenamine, Mitoxantrone, Mitoxantrone Hydrochloride, Mitozolomide, Mivavotinib, Mivebresib, Mivobulin, Mivobulin Isethionate, Mixed Bacteria Vaccine, MK0731, MKC-1, MKNK1 Inhibitor BAY 1143269, MMP Inhibitor S-3304, MNK1/2 Inhibitor ETC-1907206, Mobocertinib, Mocetinostat, Modakafusp Alfa, Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208, Modified Vitamin D Binding Protein Macrophage Activator EF-022, Modotuximab, MOF Compound RiMO-301, Mofarotene, Mogamulizumab, Molibresib, Molibresib Besylate, Momelotinib, Monalizumab, Monocarboxylate Transporter 1 Inhibitor AZD3965, Monoclonal Antibody 105AD7 Anti-idiotype Vaccine, Monoclonal Antibody 11D10, Monoclonal Antibody 11D10 Anti-Idiotype Vaccine, Monoclonal Antibody 14G2A, Monoclonal Antibody 1F5, Monoclonal Antibody 3622W94, Monoclonal Antibody 3F8, Monoclonal Antibody 3H1 Anti-Idiotype Vaccine, Monoclonal Antibody 4B5 Anti-Idiotype Vaccine, Monoclonal Antibody 7C11, Monoclonal Antibody 81C6, Monoclonal Antibody A1G4 Anti-Idiotype Vaccine, Monoclonal Antibody A27.15, Monoclonal Antibody A33, Monoclonal Antibody AbGn-7, Monoclonal Antibody AK002, Monoclonal Antibody ASP1948, Monoclonal Antibody CAL, Monoclonal Antibody CC49-delta CH2, Monoclonal Antibody CEP-37250/KHK2804, Monoclonal Antibody D6.12, Monoclonal Antibody E2.3, Monoclonal Antibody F19, Monoclonal Antibody GD2 Anti-Idiotype Vaccine, Monoclonal Antibody HeFi-1, Monoclonal Antibody Hu3S193, Monoclonal Antibody HuAFP31, Monoclonal Antibody HuHMFG1, Monoclonal Antibody huJ591, Monoclonal Antibody HuPAM4, Monoclonal Antibody IMMU-14, Monoclonal Antibody L6, Monoclonal Antibody Lym-1, Monoclonal Antibody m170, Monoclonal Antibody Me1-14 F(ab')2, Monoclonal Antibody muJ591, Monoclonal Antibody MX35 F(ab')2, Monoclonal Antibody NEO-201, Monoclonal Antibody R24, Monoclonal Antibody RAV12, Monoclonal Antibody SGN-14, Monoclonal Antibody TRK-950, Monoclonal Microbial EDP1503, Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100, Monomethyl Auristatin E, Morinda Citrifolia Fruit Extract, Morpholinodoxorubicin, Mosedipimod, Mosunetuzumab, Motesanib, Motesanib Diphosphate, Motexafin Gadolinium, Motexafin Lutetium, Motixafortide, Motolimod, MOv-gamma Chimeric Receptor Gene, Moxetumomab Pasudotox, Mps1 Inhibitor BAY 1217389, Mps1 Inhibitor BOS172722, mRNA-based Personalized Cancer Vaccine mRNA-4157, mRNA-based Personalized Cancer Vaccine NCI-4650, mRNA-based TriMix Melanoma Vaccine ECI-006, mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902, mRNA-derived KRAS-targeted Vaccine V941, mRNA-derived Lung Cancer Vaccine BI 1361849, mRNA-Derived Prostate Cancer Vaccine CV9103, mRNA-derived Prostate Cancer Vaccine CV9104, MTF-1 Inhibitor APTO-253 HCl, mTOR Inhibitor GDC-0349, mTOR Kinase Inhibitor AZD8055, mTOR Kinase Inhibitor CC-223, mTOR Kinase Inhibitor OSI-027, mTOR Kinase Inhibitor PP242, mTOR1/2 Kinase Inhibitor ME-344, mTORC 1/2 Inhibitor LXI-15029, mTORC1/2 Kinase Inhibitor BI 860585, mTORC1/mTORC2/DHFR Inhibitor ABTL0812, MUC-1/WT1 Peptide-primed Autologous Dendritic Cells, MUC1-targeted Peptide GO-203-2C, Mucoadhesive Paclitaxel Formulation, Multi-AGC Kinase Inhibitor AT13148, Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200, Multi-epitope HER2 Peptide Vaccine H2NVAC, Multi-epitope HER2 Peptide Vaccine TPIV100, Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107, Multi-kinase Inhibitor TPX-0022, Multi-kinase Inhibitor XL092, Multi-mode Kinase Inhibitor EOC317, Multi-neo-epitope Vaccine OSE 2101, Multifunctional/Multitargeted Anticancer Agent OMN54, Multikinase Inhibitor 4SC-203, Multikinase Inhibitor AEE788, Multikinase Inhibitor AT9283, Multikinase Inhibitor SAR103168, Multipeptide Vaccine S-588210, Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327, Muparfostat, Mureletecan, Murizatoclax, Muscadine Grape Extract, Mutant IDH1 Inhibitor DS-1001, Mutant p53 Activator COTI-2, Mutant-selective EGFR Inhibitor PF-06459988, MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP, MVA-BN Smallpox Vaccine, MVA-FCU1 TG4023, MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1, MYC-targeting siRNA DCR-MYC, Mycobacterium tuberculosis Arabinomannan Z-100, Mycobacterium w, Mycophenolic Acid, N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea, N-dihydrogalactochitosan, N-Methylformamide, N;N-Dibenzyl Daunomycin, NA17-A Antigen, NA17.A2 Peptide Vaccine, Nab-paclitaxel, Nab-paclitaxel/Rituximab-coated Nanoparticle AR160, Nadofaragene Firadenovec, Nagrestipen, Namirotene, Namodenoson, NAMPT Inhibitor OT-82, Nanafrocin, Nanatinostat, Nanocell-encapsulated miR-16-based microRNA Mimic, Nanoparticle Albumin-Bound Docetaxel, Nanoparticle Albumin-Bound Rapamycin, Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404, Nanoparticle Paclitaxel Ointment SOR007, Nanoparticle-based Paclitaxel Suspension, Nanoparticle-encapsulated Doxorubicin Hydrochloride, Nanoscale Coordination Polymer Nanoparticles CPI-100, Nanosomal Docetaxel Lipid Suspension, Napabucasin, Naphthalimide Analogue UNBS5162, Naptumomab Estafenatox, Naquotinib, Naratuximab Emtansine, Narnatumab, Natalizumab, Natural IFN-alpha OPC-18, Natural Killer Cells ZRx101, Navarixin, Navicixizumab, Navitoclax, Navoximod, Navy Bean Powder, Naxitamab, Nazartinib, ncmtRNA Oligonucleotide Andes-1537, Necitumumab, Nedaplatin, NEDD8 Activating Enzyme E1 Inhibitor TAS4464, Nedisertib, Nelarabine, Nelipepimut-S, Nelipepimut-S Plus GM-CSF Vaccine, Nemorubicin, Nemorubicin Hydrochloride, Neoantigen Vaccine GEN-009, Neoantigen-based Glioblastoma Vaccine, Neoantigen-based Melanoma-Poly-ICLC Vaccine, Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine, Neoantigen-based Therapeutic Cancer Vaccine GRT-C903, Neoantigen-based Therapeutic Cancer Vaccine GRT-R904, Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017, Neratinib, Neratinib Maleate, Nesvacumab, NG-nitro-L-arginine, Niacinamide, Niclosamide, Nicotinamide Riboside, Nidanilimab, Nifurtimox, Nilotinib, Nilotinib Hydrochloride Anhydrous, Nilotinib Hydrochloride Monohydrate, Nilutamide, Nimesulide-Hyaluronic Acid Conjugate CA102N, Nimodipine, Nimotuzumab, Nimustine, Nimustine Hydrochloride, Ningetinib Tosylate, Nintedanib, Niraparib, Niraparib Tosylate Monohydrate, Nirogacestat, Nitric Oxide-Releasing Acetylsalicylic Acid Derivative, Nitrogen Mustard Prodrug PR-104, Nitroglycerin Transdermal Patch, Nivolumab, NLRP3 Agonist BMS-986299, Nocodazole, Nogalamycin, Nogapendekin Alfa, Nolatrexed Dihydrochloride, Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201, Norgestrel, North American Ginseng Extract AFX-2, Nortopixantrone, Noscapine, Noscapine Hydrochloride, Not Otherwise Specified, Notch Signaling Inhibitor PF-06650808, Notch Signaling Pathway Inhibitor MK0752, NTRK/ROS1 Inhibitor DS-6051b, Nucleolin Antagonist IPP-204106N, Nucleoside Analog DFP-10917, Nucleotide Analog Prodrug NUC-3373, Nucleotide Analogue GS 9219, Numidargistat, Nurulimab, Nutlin-3a, Nutraceutical TBL-12, NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611, NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301, NY-ESO-1/GLA-SE Vaccine ID-G305, NY-ESO-B, O-Chloroacetylcarbamoylfumagillol, O6-Benzylguanine, Obatoclax Mesylate, Obinutuzumab, Oblimersen Sodium, Ocaratuzumab, Ocrelizumab, Octreotide, Octreotide Acetate, Octreotide Pamoate, Odronextamab, Ofatumumab, Ofranergene Obadenovec, Oglufanide Disodium, Olaparib, Olaptesed Pegol, Olaratumab, Oleandrin, Oleclumab, Oligo-fucoidan, Oligonucleotide SPC2996, Olinvacimab, Olivomycin, Olmutinib, Oltipraz, Olutasidenib, Olvimulogene Nanivacirepvec, Omacetaxine Mepesuccinate, Ombrabulin, Omipalisib, Onalespib, Onalespib Lactate, Onartuzumab, Onatasertib, Oncolytic Adenovirus Ad5-DNX-2401, Oncolytic Adenovirus ORCA-010, Oncolytic Herpes Simplex Virus-1 ONCR-177, Oncolytic HSV-1 C134, Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011, Oncolytic HSV-1 G207, Oncolytic HSV-1 NV1020, Oncolytic HSV-1 rQNestin34.5v.2, Oncolytic HSV-1 rRp450, Oncolytic HSV1716, Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein, Oncolytic Newcastle Disease Virus MEDI5395, Oncolytic Newcastle Disease Virus MTH-68H, Oncolytic Newcastle Disease Virus Strain PV701, Oncolytic Virus ASP9801, Oncolytic Virus RP1, Ondansetron Hydrochloride, Ontorpacept, Ontuxizumab, Onvansertib, Onvatilimab, Opaganib, OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule, Opioid Growth Factor, Opolimogene Capmilisbac, Oportuzumab Monatox, Oprozomib, Opucolimab, Oral Aminolevulinic Acid Hydrochloride, Oral Azacitidine, Oral Cancer Vaccine V3-OVA, Oral Docetaxel, Oral Fludarabine Phosphate, Oral Hsp90 Inhibitor IPI-493, Oral Ixabepilone, Oral Microencapsulated Diindolylmethane, Oral Milataxel, Oral Myoma Vaccine V3-myoma, Oral Pancreatic Cancer Vaccine V3-P, Oral Picoplatin, Oral Sodium Phenylbutyrate, Oral Topotecan Hydrochloride, Orantinib, Oraxol, Oregovomab, Orelabrutinib, Ormaplatin, Ortataxel, Orteronel, Orvacabtagene Autoleucel, Osilodrostat, Osimertinib, Other, Otlertuzumab, Ovapuldencel-T, Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006, Ovine Submaxillary Mucin, OX40L-expressing Oncolytic Adenovirus DNX-2440, Oxaliplatin, Oxaliplatin Eluting Beads, Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome, Oxcarbazepine, Oxeclosporin, Oxidative Phosphorylation Inhibitor IACS-010759, Oxidative Phosphorylation Inhibitor IM156, Oxidopamine, OxPhos Inhibitor VLX600, Ozarelix, P-cadherin Antagonist PF-03732010, P-cadherin Inhibitor PCA062, P-cadherin-targeting Agent PF-06671008, P-p68 Inhibitor RX-5902, P-TEFb Inhibitor BAY1143572, p300/CBP Bromodomain Inhibitor CCS1477, p38 MAPK Inhibitor LY3007113, p53 Peptide Vaccine MPS-128, p53-HDM2 Interaction Inhibitor MI-773, p53-HDM2 Protein-protein Interaction Inhibitor APG-115, p53/HDM2 Interaction Inhibitor CGM097, p70S6K Inhibitor LY2584702, p70S6K/Akt Inhibitor MSC2363318A, p97 Inhibitor CB-5083, p97 Inhibitor CB-5339, p97 Inhibitor CB-5339 Tosylate, Paclitaxel, Paclitaxel Ceribate, Paclitaxel Injection Concentrate for Nanodispersion, Paclitaxel Liposome, Paclitaxel Poliglumex, Paclitaxel Polymeric Micelle Formulation NANT-008, Paclitaxel PPE Microspheres, Paclitaxel Trevatide, Paclitaxel Vitamin E-Based Emulsion, Paclitaxel-Loaded Polymeric Micelle, Pacmilimab, Pacritinib, Padeliporfin, Padoporfin, PAK4 Inhibitor PF-03758309, PAK4/NAMPT Inhibitor KPT-9274, Palbociclib, Palbociclib Isethionate, Palifosfamide, Palifosfamide Tromethamine, Palladium Pd-103, Palonosetron Hydrochloride, Pamidronate Disodium, Pamidronic Acid, Pamiparib, Pamrevlumab, pan FGFR Inhibitor PRN1371, Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514, Pan-AKT Inhibitor ARQ751, Pan-AKT Kinase Inhibitor GSK690693, Pan-FGFR Inhibitor LY2874455, Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806, pan-HER Kinase Inhibitor AC480, Pan-IDH Mutant Inhibitor AG-881, Pan-KRAS Inhibitor BI 1701963, Pan-Mutant-IDH1 Inhibitor Bay-1436032, Pan-mutation-selective EGFR Inhibitor CLN-081, pan-PI3K Inhibitor CLR457, pan-PI3K/mTOR Inhibitor SF1126, Pan-PIM Inhibitor INCB053914, pan-PIM Kinase Inhibitor AZD1208, pan-PIM Kinase Inhibitor NVP-LGB-321, pan-RAF Inhibitor LXH254, Pan-RAF Inhibitor LY3009120, pan-RAF Kinase Inhibitor CCT3833, pan-RAF Kinase Inhibitor TAK-580, Pan-RAR Agonist/AP-1 Inhibitor LGD 1550, Pan-TRK Inhibitor NOV1601, Pan-TRK Inhibitor ONO-7579, Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981, Pancratistatin, Panitumumab, Panobinostat, Panobinostat Nanoparticle Formulation MTX110, Panulisib, Paricalcitol, PARP 1/2 Inhibitor IMP4297, PARP 1/2 Inhibitor NOV1401, PARP Inhibitor AZD2461, PARP Inhibitor CEP-9722, PARP Inhibitor E7016, PARP Inhibitor NMS-03305293, PARP-1/2 Inhibitor ABT-767, PARP/Tankyrase Inhibitor 2X-121, PARP7 Inhibitor RBN-2397, Parsaclisib, Parsaclisib Hydrochloride, Parsatuzumab, Partially Engineered T-regulatory Cell Donor Graft TRGFT-201, Parvovirus H-1, Pasireotide, Pasotuxizumab, Patidegib, Patidegib Topical Gel, Patritumab, Patritumab Deruxtecan, Patupilone, Paxalisib, Pazopanib, Pazopanib Hydrochloride, pbi-shRNA STMN1 Lipoplex, PBN Derivative OKN-007, PCNU, PD-1 Directed Probody CX-188, PD-1 Inhibitor, PD-L1 Inhibitor GS-4224, PD-L1 Inhibitor INCB086550, PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480, PD-L1/PD-L2/VISTA Antagonist CA-170, PDK1 Inhibitor AR-12, pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0, PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1, PEG-interleukin-2, PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1, PEG-Proline-Interferon Alfa-2b, Pegargiminase, Pegaspargase, Pegdinetanib, Pegfilgrastim, Pegilodecakin, Peginterferon Alfa-2a, Peginterferon Alfa-2b, Pegvisomant, Pegvorhyaluronidase Alfa, Pegylated Deoxycytidine Analogue DFP-14927, Pegylated Interferon Alfa, Pegylated Liposomal Belotecan, Pegylated Liposomal Doxorubicin Hydrochloride, Pegylated Liposomal Irinotecan, Pegylated Liposomal Mitomycin C Lipid-based Prodrug, Pegylated Liposomal Mitoxantrone Hydrochloride, Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010, Pegylated Paclitaxel, Pegylated Recombinant Human Arginase I BCT-100, Pegylated Recombinant Human Hyaluronidase PH20, Pegylated Recombinant Interleukin-2 THOR-707, Pegylated Recombinant L-asparaginase Erwinia chrysanthemi, Pegylated SN-38 Conjugate PLX038, Pegzilarginase, Pelabresib, Pelareorep, Peldesine, Pelitinib, Pelitrexol, Pembrolizumab, Pemetrexed, Pemetrexed Disodium, Pemigatinib, Pemlimogene Merolisbac, Penberol, Penclomedine, Penicillamine, Pentamethylmelamine, Pentamustine, Pentostatin, Pentoxifylline, PEOX-based Polymer Encapsulated Paclitaxel FID-007, PEP-3-KLH Conjugate Vaccine, Pepinemab, Peplomycin, Peplomycin Sulfate, Peposertib, Peptichemio, Peptide 946 Melanoma Vaccine, Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine, Peretinoin, Perflenapent Emulsion, Perfosfamide, Perifosine, Perillyl Alcohol, Personalized ALL-specific Multi-HLA-binding Peptide Vaccine, Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC, Personalized Cancer Vaccine RO7198457, Personalized Neoantigen DNA Vaccine GNOS-PV01, Personalized Neoantigen DNA Vaccine GNOS-PVO2, Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01, Personalized Neoepitope Yeast Vaccine YE-NEO-001, Personalized Peptide Cancer Vaccine NEO-PV-01, Pertuzumab, Pevonedistat, Pexastimogene Devacirepvec, Pexidartinib, Pexmetinib, PGG Beta-Glucan, PGLA/PEG Copolymer-Based Paclitaxel, PH20 Hyaluronidase-expressing Adenovirus VCN-01, Phaleria macrocarpa Extract DLBS-1425, Pharmacological Ascorbate, Phellodendron amurense Bark Extract, Phenesterin, Phenethyl Isothiocyanate, Phenethyl Isothiocyanate-containing Watercress Juice, Phenyl Acetate, Phenytoin Sodium, Phosphaplatin PT-112, Phosphatidylcholine-Bound Silybin, Phospholipid Ether-drug Conjugate CLR 131, Phosphoramide Mustard, Phosphorodiamidate Morpholino Oligomer AVI-4126, Phosphorus P-32, Photodynamic Compound TLD-1433, Photosensitizer LUZ 11, Phytochlorin Sodium-Polyvinylpyrrolidone Complex, PI3K Alpha/Beta Inhibitor BAY1082439, PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate, PI3K Inhibitor ACP-319, PI3K Inhibitor BGT226, PI3K Inhibitor GDC-0084, PI3K Inhibitor GDC0077, PI3K Inhibitor GSK1059615, PI3K Inhibitor WX-037, PI3K Inhibitor ZSTK474, PI3K p110beta/delta Inhibitor KA2237, PI3K-alpha Inhibitor MEN1611, PI3K-beta Inhibitor GSK2636771, PI3K-beta Inhibitor SAR260301, PI3K-delta Inhibitor AMG 319, PI3K-delta Inhibitor HMPL 689, PI3K-delta Inhibitor INCB050465, PI3K-delta Inhibitor PWT143, PI3K-delta Inhibitor SHC014748M, PI3K-delta Inhibitor YY-20394, PI3K-gamma Inhibitor IPI-549, PI3K/BET Inhibitor LY294002, PI3K/mTOR Kinase Inhibitor DS-7423, PI3K/mTOR Kinase Inhibitor PF-04691502, PI3K/mTOR Kinase Inhibitor VS-5584, PI3K/mTOR Kinase Inhibitor WXFL10030390, PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170, PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901, PI3Ka/mTOR Inhibitor PKI-179, PI3Kalpha Inhibitor AZD8835, PI3Kbeta Inhibitor AZD8186, PI3Kdelta Inhibitor GS-9901, Pibenzimol, Pibrozelesin, Pibrozelesin Hydrobromide, Picibanil, Picoplatin, Picrasinoside H, Picropodophyllin, Pictilisib, Pictilisib Bismesylate, Pidilizumab, Pilaralisib, PIM Kinase Inhibitor LGH447, PIM Kinase Inhibitor SGI-1776, PIM Kinase Inhibitor TP-3654, PIM/FLT3 Kinase Inhibitor SEL24, Pimasertib, Pimitespib, Pimurutamab, Pinatuzumab Vedotin, Pingyangmycin, Pinometostat, Pioglitazone, Pioglitazone Hydrochloride, Pipendoxifene, Piperazinedione, Piperine Extract (Standardized), Pipobroman, Piposulfan, Pirarubicin, Pirarubicin Hydrochloride, Pirfenidone, Piritrexim, Piritrexim Isethionate, Pirotinib, Piroxantrone, Piroxantrone Hydrochloride, Pixantrone, Pixantrone Dimaleate, Pixatimod, PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231, PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521, PKC-beta Inhibitor MS-553, Placebo, Pladienolide Derivative E7107, Plamotamab, Plasmid DNA Vaccine pING-hHER3FL, Platinum, Platinum Acetylacetonate-Titanium Dioxide Nanoparticles, Platinum Compound, Plevitrexed, Plicamycin, Plinabulin, Plitidepsin, Plk1 Inhibitor BI 2536, PLK1 Inhibitor CYC140, PLK1 Inhibitor TAK-960, Plocabulin, Plozalizumab, pNGVL4a-CRT-E6E7L2 DNA Vaccine, pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2, Pol I Inhibitor CX5461, Polatuzumab Vedotin, Polidocanol, Poliglusam, Polo-like Kinase 1 Inhibitor GSK461364, Polo-like Kinase 1 Inhibitor MK1496, Polo-like Kinase 1 Inhibitor NMS-1286937, Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate, Poly-alendronate Dextran-Guanidine Conjugate, Poly-gamma Glutamic Acid, Polyamine Analog SL11093, Polyamine Analogue PG11047, Polyamine Analogue SBP-101, Polyamine Transport Inhibitor AMXT-1501 Dicaprate, Polyandrol, Polyethylene Glycol Recombinant Endostatin, Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318, Polymer-conjugated IL-15 Receptor Agonist NKTR-255, Polymer-encapsulated Luteolin Nanoparticle, Polymeric Camptothecin Prodrug XMT-1001, Polypodium leucotomos Extract, Polysaccharide-K, Polysialic Acid, Polyunsaturated Fatty Acid, Polyvalent Melanoma Vaccine, Pomalidomide, Pomegranate Juice, Pomegranate Liquid Extract, Ponatinib, Ponatinib Hydrochloride, Porcupine Inhibitor CGX1321, Porcupine Inhibitor ETC-1922159, Porcupine Inhibitor RXC004, Porcupine Inhibitor WNT974, Porcupine Inhibitor XNW7201, Porfimer Sodium, Porfiromycin, Poziotinib, PPAR Alpha Antagonist TPST-1120, PR1 Leukemia Peptide Vaccine, Pracinostat, Pralatrexate, Pralsetinib, Praluzatamab Ravtansine, PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701, Pravastatin Sodium, Prednimustine, Prednisolone, Prednisolone Acetate, Prednisolone Sodium Phosphate, Prednisone, Prexasertib, Prexigebersen, PRIMA-1 Analog APR-246, Prime Cancer Vaccine MVA-BN-CV301, Prinomastat, PRMT1 Inhibitor GSK3368715, PRMT5 Inhibitor JNJ-64619178, PRMT5 Inhibitor PRT811, Proapoptotic Sulindac Analog CP-461, Procarbazine, Procarbazine Hydrochloride, Procaspase Activating Compound-1 VO-100, Progestational IUD, Prohibitin-Targeting Peptide 1, Prolgolimab, Prostaglandin E2 EP4 Receptor Inhibitor AN0025, Prostaglandin E2 EP4 Receptor Inhibitor E7046, Prostate Cancer Vaccine ONY-P1, Prostate Health Cocktail Dietary Supplement, Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024, Protease-activated Anti-PD-L1 Antibody Prodrug CX-072, Protein Arginine Methyltransferase 5 Inhibitor GSK3326595, Protein Arginine Methyltransferase 5 Inhibitor PF-06939999, Protein Arginine Methyltransferase 5 Inhibitor PRT543, Protein Kinase C Inhibitor IDE196, Protein Phosphatase 2A Inhibitor LB-100, Protein Stabilized Liposomal Docetaxel Nanoparticles, Protein Tyrosine Kinase 2 Inhibitor IN10018, Proxalutamide, PSA/IL-2/GM-CSF Vaccine, PSA/PSMA DNA Plasmid INO-5150, Pseudoisocytidine, PSMA-targeted Docetaxel Nanoparticles BIND-014, PSMA-targeted Tubulysin B-containing Conjugate EC1169, PSMA/CD3 Tri-specific T-cell Activating Construct HPN424, PTEF-b/CDK9 Inhibitor BAY1251152, Pterostilbene, Pumitepa, Puquitinib, Puquitinib Mesylate, Puromycin, Puromycin Hydrochloride, PV-10, PVA Microporous Hydrospheres/Doxorubicin Hydrochloride, Pyrazinamide, Pyrazoloacridine, Pyridyl Cyanoguanidine CHS 828, Pyrotinib, Pyrotinib Dimaleate, Pyroxamide, Pyruvate Kinase Inhibitor TLN-232, Pyruvate Kinase M2 Isoform Activator TP-1454, Qilisheng Immunoregulatory Oral Solution, Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine, Quarfloxin, Quinacrine Hydrochloride, Quinine, Quisinostat, Quizartinib, R-(-)-Gossypol Acetic Acid, Rabusertib, Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88, Racotumomab, RAD51 Inhibitor CYT-0851, Radgocitabine, Radgocitabine Hydrochloride, Radioactive Iodine, Radiolabeled CC49, Radium Ra 223 Dichloride, Radium Ra 224-labeled Calcium Carbonate Microparticles, Radix Angelicae Sinensis/Radix Astragali Herbal Supplement, Radotinib Hydrochloride, Raf Kinase Inhibitor HM95573, RAF Kinase Inhibitor L-779450, RAF Kinase Inhibitor XL281, Ragifilimab, Ralaniten Acetate, Ralimetinib Mesylate, Raloxifene, Raloxifene Hydrochloride, Raltitrexed, Ramucirumab, Ranibizumab, Ranimustine, Ranolazine, Ranpirnase, RARalpha Agonist IRX5183, Ras Inhibitor, Ras Peptide ASP, Ras Peptide CYS, Ras Peptide VAL, Razoxane, Realgar-Indigo naturalis Formulation, Rebastinib Tosylate, Rebeccamycin, Rebimastat, Receptor Tyrosine Kinase Inhibitor R1530, Recombinant Adenovirus-p53 SCH-58500, Recombinant Anti-WT1 Immunotherapeutic GSK2302024A, Recombinant Bacterial Minicells VAX014, Recombinant Bispecific Single-Chain Antibody rM28, Recombinant CD40-Ligand, Recombinant Erwinia asparaginase JZP-458, Recombinant Erythropoietin, Recombinant Fas Ligand, Recombinant Fractalkine, Recombinant Granulocyte-Macrophage Colony-Stimulating Factor, Recombinant Human 6Ckine, Recombinant Human Adenovirus Type 5 H101, Recombinant Human Angiotensin Converting Enzyme 2 APN01, Recombinant Human Apolipoprotein(a) Kringle V MG1102, Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine, Recombinant Human Endostatin, Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine, Recombinant Human Papillomavirus 11-valent Vaccine, Recombinant Human Papillomavirus Bivalent Vaccine, Recombinant Human Papillomavirus Nonavalent Vaccine, Recombinant Human Plasminogen Kringle 5 Domain ABT 828, Recombinant Human TRAIL-Trimer Fusion Protein SCB-313, Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301, Recombinant Interferon, Recombinant Interferon Alfa, Recombinant Interferon Alfa-1b, Recombinant Interferon Alfa-2a, Recombinant Interferon Alfa-2b, Recombinant Interferon Alpha 2b-like Protein, Recombinant Interferon Beta, Recombinant Interferon Gamma, Recombinant Interleukin-12, Recombinant Interleukin-13, Recombinant Interleukin-18, Recombinant Interleukin-2, Recombinant Interleukin-6, Recombinant KSA Glycoprotein CO17-1A, Recombinant Leukocyte Interleukin, Recombinant Leukoregulin, Recombinant Luteinizing Hormone, Recombinant Macrophage Colony-Stimulating Factor, Recombinant MAGE-3.1 Antigen, Recombinant MIP1-alpha Variant ECI301, Recombinant Modified Vaccinia Ankara-5T4 Vaccine, Recombinant Oncolytic Poliovirus PVS-RIPO, Recombinant Platelet Factor 4, Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A, Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207, Recombinant Super-compound Interferon, Recombinant Thyroglobulin, Recombinant Thyrotropin Alfa, Recombinant Transforming Growth Factor-Beta, Recombinant Transforming Growth Factor-Beta-2, Recombinant Tumor Necrosis Factor-Alpha, Recombinant Tyrosinase-Related Protein-2, Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter, Redaporfin, Refametinib, Regorafenib, Relacorilant, Relatlimab, Relugolix, Remetinostat, Renal Cell Carcinoma Peptides Vaccine IMA901, Reparixin, Repotrectinib, Resiquimod, Resiquimod Topical Gel, Resistant Starch, Resminostat, Resveratrol, Resveratrol Formulation SRT501, RET Inhibitor DS-5010, RET Mutation/Fusion Inhibitor BLU-667, RET/SRC Inhibitor TPX-0046, Retaspimycin, Retaspimycin Hydrochloride, Retelliptine, Retifanlimab, Retinoic Acid Agent Ro 16-9100, Retinoid 9cUAB30, Retinol, Retinyl Acetate, Retinyl Palmitate, Retrovector Encoding Mutant Anti-Cyclin G1, Revdofilimab, Rexinoid NRX 194204, Rezivertinib, RFT5-dgA Immunotoxin IMTOX25, Rhenium Re 188 BMEDA-labeled Liposomes, Rhenium Re-186 Hydroxyethylidene Diphosphonate, Rhenium Re-188 Ethiodized Oil, Rhenium Re-188 Etidronate, Rhizoxin, RhoC Peptide Vaccine RV001V, Ribociclib, Ribociclib/Letrozole, Ribonuclease QBI-139, Ribosome-Inactivating Protein CY503, Ribozyme RPI.4610, Rice Bran, Ricolinostat, Ridaforolimus, Rigosertib, Rigosertib Sodium, Rilimogene Galvacirepvec, Rilimogene Galvacirepvec/Rilimogene Glafolivec, Rilimogene Glafolivec, Rilotumumab, Rindopepimut, Ripertamab, RIPK1 Inhibitor GSK3145095, Ripretinib, Risperidone Formulation in Rumenic Acid, Ritrosulfan, Rituximab, Rituximab and Hyaluronidase Human, Rituximab Conjugate CON-4619, Riviciclib, Rivoceranib, Rivoceranib Mesylate, RNR Inhibitor COH29, Robatumumab, Roblitinib, ROBO1-targeted BiCAR-NKT Cells, Rocakinogene Sifuplasmid, Rocapuldencel-T, Rociletinib, Rodorubicin, Roducitabine, Rofecoxib, Roflumilast, Rogaratinib, Rogletimide, Rolinsatamab Talirine, Romidepsin, Roneparstat, Roniciclib, Ropeginterferon Alfa-2B, Ropidoxuridine, Ropocamptide, Roquinimex, RORgamma Agonist LYC-55716, Rosabulin, Rose Bengal Solution PV-10, Rosiglitazone Maleate, Rosmantuzumab, Rosopatamab, Rosuvastatin, Rovalpituzumab Tesirine, RSK1-4 Inhibitor PMD-026, Rubitecan, Rucaparib, Rucaparib Camsylate, Rucaparib Phosphate, Ruthenium Ru-106, Ruthenium-based Small Molecule Therapeutic BOLD-100, Ruthenium-based Transferrin Targeting Agent NKP-1339, Ruxolitinib, Ruxolitinib Phosphate, Ruxotemitide, S-Adenosylmethionine, S-equol, S1P Receptor Agonist KRP203, Sabarubicin, Sabatolimab, Sacituzumab Govitecan, Sacubitril/Valsartan, Safingol, Sagopilone, Salirasib, Salmonella VNP20009, Sam68 Modulator CWP232291, Samalizumab, Samarium Sm 153-DOTMP, Samotolisib, Samrotamab Vedotin, Samuraciclib, Sapacitabine, Sapanisertib, Sapitinib, Saracatinib, Saracatinib Difumarate, SarCNU, Sardomozide, Sargramostim, Sasanlimab, Satraplatin, Savolitinib, SBIL-2, Scopoletin, SDF-1 Receptor Antagonist PTX-9908, Seclidemstat, Sedoxantrone Trihydrochloride, Selatinib Ditosilate, Selective Androgen Receptor Modulator RAD140, Selective Cytokine Inhibitory Drug CC-1088, Selective Estrogen Receptor Degrader AZD9496, Selective Estrogen Receptor Degrader AZD9833, Selective Estrogen Receptor Degrader LSZ102, Selective Estrogen Receptor Degrader LX-039, Selective Estrogen Receptor Degrader LY3484356, Selective Estrogen Receptor Degrader SRN-927, Selective Estrogen Receptor Modulator CC-8490, Selective Estrogen Receptor Modulator TAS-108, Selective Glucocorticoid Receptor Antagonist CORT125281, Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352, Seliciclib, Selicrelumab, Selinexor, Selitrectinib, Selonsertib, Selpercatinib, Selumetinib, Selumetinib Sulfate, Semaxanib, Semuloparin, Semustine, Seneca Valley Virus-001, Seocalcitol, Sepantronium Bromide, Serabelisib, Serclutamab Talirine, SERD D-0502, SERD G1T48, SERD GDC-9545, SERD SAR439859, SERD SHR9549, SERD ZN-c5, Serdemetan, Sergiolide, Seribantumab, Serine/Threonine Kinase Inhibitor CBP501, Serine/Threonine Kinase Inhibitor XL418, Serplulimab, Sevacizumab, Seviteronel, Shared Anti-Idiotype-AB-S006, Shared Anti-Idiotype-AB-S024A, Shark Cartilage, Shark Cartilage Extract AE-941, Shenqi Fuzheng Injection SQ001, Sho-Saiko-To, Short Chain Fatty Acid HQK-1004, SHP-1 Agonist SC-43, SHP2 Inhibitor JAB-3068, SHP2 Inhibitor RLY-1971, SHP2 Inhibitor RMC-4630, SHP2 Inhibitor TNO155, Shu Yu Wan Formula, Sialyl Tn Antigen, Sialyl Tn-KLH Vaccine, Sibrotuzumab, siG12D LODER, Silatecan AR-67, Silibinin, Silicon Phthalocyanine 4, Silmitasertib Sodium, Siltuximab, Simalikalactone D, Simeprevir, Simlukafusp Alfa, Simmitinib, Simotaxel, Simtuzumab, Simurosertib, Sintilimab, Siplizumab, Sipuleucel-T, Siremadlin, siRNA-transfected Peripheral Blood Mononuclear Cells APN401, Sirolimus, SIRPa-4-1BBL Fusion Protein DSP107, SIRPa-Fc Fusion Protein TTI-621, SIRPa-Fc-CD40L Fusion Protein SL-172154, SIRPa-IgG4-Fc Fusion Protein TTI-622, Sitimagene Ceradenovec, Sitravatinib, Sivifene, Sizofiran, SLC6A8 Inhibitor RGX-202, SLCT Inhibitor GNS561, SMAC Mimetic BI 891065, Smac Mimetic GDC-0152, Smac Mimetic GDC-0917, Smac Mimetic LCL161, SMO Protein Inhibitor ZSP1602, Smoothened Antagonist BMS-833923, Smoothened Antagonist LDE225 Topical, Smoothened Antagonist LEQ506, Smoothened Antagonist TAK-441, SN-38-Loaded Polymeric Micelles NK012, SNS01-T Nanoparticles, Sobuzoxane, Sodium Borocaptate, Sodium Butyrate, Sodium Dichloroacetate, Sodium Iodide I-131, Sodium Metaarsenite, Sodium Phenylbutyrate, Sodium Salicylate, Sodium Selenite, Sodium Stibogluconate, Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108, Sofituzumab Vedotin, Solitomab, Sonepcizumab, Sonidegib, Sonolisib, Sorafenib, Sorafenib Tosylate, Sorghum bicolor Supplement, Sotigalimab, Sotorasib, Sotrastaurin, Sotrastaurin Acetate, Soy Isoflavones, Soy Protein Isolate, Spanlecortemlocel, Sparfosate Sodium, Sparfosic Acid, Spartalizumab, Spebrutinib, Spherical Nucleic Acid Nanoparticle NU-0129, Spirogermanium, Spiromustine, Spiroplatin, Splicing Inhibitor H3B-8800, Spongistatin, Squalamine Lactate, SR-BP1/HSI Inhibitor SR31747A, SR-T100 Gel, Src Kinase Inhibitor AP 23846, Src Kinase Inhibitor KX2-391, Src Kinase Inhibitor KX2-391 Ointment, Src Kinase Inhibitor M475271, Src/Abl Kinase Inhibitor AZD0424, Src/tubulin Inhibitor KX02, SRPK1/ABCG2 Inhibitor SCO-101, ssRNA-based Immunomodulator CV8102, SSTR2-targeting Protein/DM1 Conjugate PEN-221, St. John's Wort, Stallimycin, Staphylococcal Enterotoxin A, Staphylococcal Enterotoxin B, STAT Inhibitor OPB-111077, STAT3 Inhibitor DSP-0337, STAT3 Inhibitor OPB-31121, STAT3 Inhibitor OPB-51602, STAT3 Inhibitor TTI-101, STAT3 Inhibitor WP1066, Staurosporine, STING Agonist BMS-986301, STING Agonist GSK3745417, STING Agonist IMSA101, STING Agonist MK-1454, STING Agonist SB 11285, STING Agonist TAK-676, STING-activating Cyclic Dinucleotide Agonist MIW815, STING-expressing E. coli SYNB1891, Streptonigrin, Streptozocin, Strontium Chloride Sr-89, Submicron Particle Paclitaxel Sterile Suspension, Sugemalimab, Sulfatinib, Sulforaphane, Sulindac, Sulofenur, Sumoylation Inhibitor TAK-981, Sunitinib, Sunitinib Malate, Super Enhancer Inhibitor GZ17-6.02, Superagonist Interleukin-15:Interleukin-15 Receptor alphaSu/Fc Fusion Complex ALT-803, Superoxide Dismutase Mimetic GC4711, Suramin, Suramin Sodium, Survivin Antigen, Survivin Antigen Vaccine DPX-Survivac, Survivin mRNA Antagonist EZN-3042, Survivin-expressing CVD908ssb-TXSVN Vaccine, Sustained-release Lipid Inhaled Cisplatin, Sustained-release Mitomycin C Hydrogel Formulation UGN-101, Sustained-release Mitomycin C Hydrogel Formulation UGN-102, Syk Inhibitor HMPL-523, Synchrotope TA2M Plasmid DNA Vaccine, Synchrovax SEM Plasmid DNA Vaccine, Synthetic Alkaloid PM00104, Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2, Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1, Synthetic hTERT DNA Vaccine INO-1400, Synthetic hTERT DNA Vaccine INO-1401, Synthetic Hypericin, Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201, Synthetic Long E6/E7 Peptides Vaccine HPV-01, Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b, Synthetic Plumbagin PCUR-101, T900607, Tabalumab, Tabelecleucel, Tacedinaline, Tafasitamab, Tagraxofusp-erzs, Talabostat, Talabostat Mesylate, Talacotuzumab, Talactoferrin Alfa, Taladegib, Talampanel, Talaporfin Sodium, Talazoparib, Taletrectinib, Talimogene Laherparepvec, Tallimustine, Talmapimod, Talotrexin, Talotrexin Ammonium, Taltobulin, TAM/c-Met Inhibitor RXDX-106, Tamibarotene, Taminadenant, Tamoxifen, Tamoxifen Citrate, Tamrintamab Pamozirine, Tandutinib, Tanespimycin, Tanibirumab, Tankyrase Inhibitor STP1002, Tanomastat, Tapotoclax, Tarenflurbil, Tarextumab, Tariquidar, Tasadenoturev, Taselisib, Tasidotin, Tasisulam, Tasisulam Sodium, Tasquinimod, Taurolidine, Tauromustine, Taurultam, Taurultam Analogue GP-2250, Tavokinogene Telseplasmid, Tavolimab, Taxane Analogue TPI 287, Taxane Compound, Taxol Analogue SID 530, Tazarotene, Tazemetostat, Tebentafusp, Teclistamab, Tecogalan Sodium, Tefinostat, Tegafur, Tegafur-gimeracil-oteracil Potassium, Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation, Tegafur-Uracil, Tegavivint, Teglarinad, Teglarinad Chloride, Telaglenastat, Telaglenastat Hydrochloride, Telapristone, Telapristone Acetate, Telatinib Mesylate, Telisotuzumab, Telisotuzumab Vedotin, Telomerase Inhibitor FJ5002, Telomerase-specific Type 5 Adenovirus OBP-301, Teloxantrone, Teloxantrone Hydrochloride, Telratolimod, Temarotene, Temoporfin, Temozolomide, Temsirolimus, Tenalisib, Tenifatecan, Teniposide, Tepoditamab, Tepotinib, Teprotumumab, Terameprocol, Terfluranol, Tergenpumatucel-L, Teroxirone, Tertomotide, Tesetaxel, Tesevatinib, Tesidolumab, Testolactone, Testosterone Enanthate, Tetanus Toxoid Vaccine, Tetradecanoylphorbol Acetate, Tetrahydrouridine, Tetraphenyl Chlorin Disulfonate, Tetrathiomolybdate, Tezacitabine, Tezacitabine Anhydrous, TGF-beta Receptor 1 Inhibitor PF-06952229, TGF-beta Receptor 1 Kinase Inhibitor SH3051, TGF-beta Receptor 1 Kinase Inhibitor YL-13027, TGFa-PE38 Immunotoxin, TGFbeta Inhibitor LY3200882, TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200, Thalicarpine, Thalidomide, Theliatinib, Theramide, Therapeutic Angiotensin-(1-7), Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907, Therapeutic Cancer Vaccine ATP128, Therapeutic Estradiol, Therapeutic Hydrocortisone, Therapeutic Liver Cancer Peptide Vaccine IMA970A, Thiarabine, Thiodiglycol, Thioguanine, Thioguanine Anhydrous, Thioinosine, Thioredoxin-1 Inhibitor PX-12, Thiotepa, Thioureidobutyronitrile, THL-P, Thorium Th 227 Anetumab, Thorium Th 227 Anetumab Corixetan, Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439, Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497, Threonine Tyrosine Kinase Inhibitor CFI-402257, Thymidylate Synthase Inhibitor CX1106, Thymidylate Synthase Inhibitor DFP-11207, Thymopentin, Thyroid Extract, Tiazofurin, Tidutamab, Tigapotide, Tigatuzumab, TIGIT Inhibitor M6223, TIGIT-targeting Agent MK-7684, Tilarginine, Tilogotamab, Tilsotolimod Sodium, Timonacic, Tin Ethyl Etiopurpurin, Tinostamustine, Tinzaparin Sodium, Tiomolibdate Choline, Tiomolibdate Diammonium, Tipapkinogene Sovacivec, Tipifarnib, Tipiracil, Tipiracil Hydrochloride, Tirabrutinib, Tiragolumab, Tirapazamine, Tirbanibulin, Tisagenlecleucel, Tislelizumab, Tisotumab Vedotin, Tivantinib, Tivozanib, TLC ELL-12, TLR Agonist BDB001, TLR Agonist BSG-001, TLR Agonist CADI-05, TLR-Directed Cationic Lipid-DNA Complex JVRS-100, TLR7 Agonist 852A, TLR7 agonist BNT411, TLR7 Agonist LHC165, TLR7/8/9 Antagonist IMO-8400, TLR8 Agonist DN1508052, TLR9 Agonist AST-008, TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells, Tocilizumab, Tocladesine, Tocotrienol, Tocotrienol-rich Fraction, Tolebrutinib, Toll-like Receptor 7 Agonist DSP-0509, Tolnidamine, Tomaralimab, Tomato-Soy Juice, Tomivosertib, Topical Betulinic Acid, Topical Celecoxib, Topical Fluorouracil, Topical Gemcitabine Hydrochloride, Topical Potassium Dobesilate, Topical Trichloroacetic Acid, Topixantrone, Topoisomerase I Inhibitor Genz-644282, Topoisomerase I Inhibitor LMP400, Topoisomerase I Inhibitor LMP776, Topoisomerase I/II Inhibitor NEV-801, Topoisomerase-1 Inhibitor LMP744, Topoisomerase-II Inhibitor Racemic XK469, Topoisomerase-II-beta Inhibitor Racemic XK469, Topotecan, Topotecan Hydrochloride, Topotecan Hydrochloride Liposomes, Topotecan Sustained-release Episcleral Plaque, Topsalysin, TORC1/2 Kinase Inhibitor DS-3078a, Toremifene, Toremifene Citrate, Toripalimab, Tosedostat, Tositumomab, Total Androgen Blockade, Tovetumab, Tozasertib Lactate, TP40 Immunotoxin, Trabectedin, Trabedersen, TRAIL Receptor Agonist ABBV-621, Trametinib, Trametinib Dimethyl Sulfoxide, Trans Sodium Crocetinate, Transdermal 17beta-Estradiol Gel BHR-200, Transdermal 4-Hydroxytestosterone, Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01, Transferrin Receptor-Targeted Liposomal p53 cDNA, Transferrin-CRM107, Tranylcypromine Sulfate, Trapoxin, Trastuzumab, Trastuzumab Conjugate BI-CON-02, Trastuzumab Deruxtecan, Trastuzumab Duocarmazine, Trastuzumab Emtansine, Trastuzumab Monomethyl Auristatin F, Trastuzumab-TLR 7/8 Agonist BDC-1001, Trastuzumab/Hyaluronidase-oysk, Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502, Trebananib, Tremelimumab, Treosulfan, Tretazicar, Tretinoin, Tretinoin Liposome, Triamcinolone Acetonide, Triamcinolone Hexacetonide, Triapine, Triazene Derivative CB10-277, Triazene Derivative TriN2755, Triazinate, Triaziquone, Tributyrin, Triciribine Phosphate, Trientine Hydrochloride, Triethylenemelamine, Trifluridine, Trifluridine and Tipiracil Hydrochloride, Trigriluzole, Trilaciclib, Trimelamol, Trimeric GITRL-Fc OMP-336B11, Trimethylcolchicinic Acid, Trimetrexate, Trimetrexate Glucuronate, Trioxifene, Triplatin Tetranitrate, Triptolide Analog, Triptorelin, Triptorelin Pamoate, Tris-acryl Gelatin Microspheres, Tritylcysteine, TRK Inhibitor AZD6918, TRK Inhibitor TQB3558, TrkA Inhibitor VMD-928, Trodusquemine, Trofosfamide, Troglitazone, Tropomyosin Receptor Kinase Inhibitor AZD7451, Troriluzole, Troxacitabine, Troxacitabine Nucleotide Prodrug MIV-818, TRPM8 Agonist D-3263, TRPV6 Calcium Channel Inhibitor SOR-C13, TSP-1 Mimetic ABT-510, TSP-1 Mimetic Fusion Protein CVX-045, Tubercidin, Tubulin Binding Agent TTI-237, Tubulin Inhibitor ALB 109564 Dihydrochloride, Tubulin Inhibitor ALB-109564, Tubulin Polymerization Inhibitor AEZS 112, Tubulin Polymerization Inhibitor CKD-516, Tubulin Polymerization Inhibitor VERU-111, Tubulin-Binding Agent SSR97225, Tucatinib, Tucidinostat, Tucotuzumab Celmoleukin, Tyroserleutide, Tyrosinase Peptide, Tyrosinase-KLH, Tyrosinase:146-156 Peptide, Tyrosine Kinase Inhibitor, Tyrosine Kinase Inhibitor OSI-930, Tyrosine Kinase Inhibitor SU5402, Tyrosine Kinase Inhibitor TL-895, Tyrosine Kinase Inhibitor XL228, UAE Inhibitor TAK-243, Ubenimex, Ubidecarenone Nanodispersion BPM31510n, Ublituximab, Ulinastatin, Ulixertinib, Ulocuplumab, Umbralisib, Uncaria tomentosa Extract, Upamostat, Upifitamab, Uproleselan, Uprosertib, Urabrelimab, Uracil Ointment, Urelumab, Uroacitides, Urokinase-Derived Peptide A6, Ursolic Acid, USP14/UCHL5 Inhibitor VLX1570, Utomilumab, Uzansertib, V930 Vaccine, Vaccine-Sensitized Draining Lymph Node Cells, Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules, Vactosertib, Vadacabtagene Leraleucel, Vadastuximab Talirine, Vadimezan, Valecobulin, Valemetostat, Valproic Acid, Valrubicin, Valspodar, Vandetanib, Vandetanib-eluting Radiopaque Bead BTG-002814, Vandortuzumab Vedotin, Vantictumab, Vanucizumab, Vapreotide, Varlilumab, Varlitinib, Varlitinib Tosylate, Vascular Disrupting Agent BNC105, Vascular Disrupting Agent BNC105P, Vascular Disrupting Agent ZD6126, Vatalanib, Vatalanib Succinate, Vecabrutinib, Vector-peptide Conjugated Paclitaxel, Vedolizumab, VEGF Inhibitor PTC299, VEGF/HGF-targeting DARPin MP0250, VEGFR Inhibitor KRN951, VEGFR-2 DNA Vaccine VXM01, VEGFR/FGFR Inhibitor ODM-203, VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593, VEGFR2 Tyrosine Kinase Inhibitor PF-00337210, VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813, Veliparib, Veltuzumab, Vemurafenib, Venetoclax, Verapamil, Verpasep Caltespen, Verubulin, Verubulin Hydrochloride, Vesencumab, Vesigenurtucel-L, VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220, VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820, Viagenpumatucel-L, Vibecotamab, Vibostolimab, Vilaprisan, Vinblastine, Vinblastine Sulfate, Vincristine, Vincristine Liposomal, Vincristine Sulfate, Vincristine Sulfate Liposome, Vindesine, Vinepidine, Vinflunine, Vinflunine Ditartrate, Vinfosiltine, Vinorelbine, Vinorelbine Tartrate, Vinorelbine Tartrate Emulsion, Vinorelbine Tartrate Oral, Vintafolide, Vinzolidine, Vinzolidine Sulfate, Virulizin, Vismodegib, Vistusertib, Vitamin D3 Analogue ILX23-7553, Vitamin E Compound, Vitespen, VLP-encapsulated TLR9 Agonist CMP-001, Vocimagene Amiretrorepvec, Vofatamab, Volasertib, Volociximab, Vonlerolizumab, Vopratelimab, Vorasidenib, Vorinostat, Vorolanib, Vorsetzumab Mafodotin, Vosaroxin, Vosilasarm, Voxtalisib, Vulinacimab, Warfarin Sodium, Wee1 Inhibitor ZN-c3, Wee1 Kinase Inhibitor Debio 0123, White Carrot, Wnt Signaling Inhibitor SM04755, Wnt Signaling Pathway Inhibitor SM08502, Wnt-5a Mimic Hexapeptide Foxy-5, Wobe-Mugos E, WT1 Peptide Vaccine OCV-501, WT1 Peptide Vaccine WT2725, WT1 Protein-derived Peptide Vaccine DSP-7888, WT1-A10/AS01B Immunotherapeutic GSK2130579A, WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401, Xanthohumol, XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410, Xeloda, Xentuzumab, Xevinapant, Xiaoai Jiedu Decoction, XIAP Antisense Oligonucleotide AEG35156, XIAP/cIAP1 Antagonist ASTX660, Xiliertinib, Xisomab 3G3, XPO1 Inhibitor SL-801, Y 90 Monoclonal Antibody CC49, Y 90 Monoclonal Antibody HMFG1, Y 90 Monoclonal Antibody Lym-1, Y 90 Monoclonal Antibody m170, Y 90 Monoclonal Antibody M195, Yang Yin Fu Zheng, Yangzheng Xiaoji Extract, Yiqi-yangyin-jiedu Herbal Decoction, Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8, Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101, Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66, Yttrium Y 90 Basiliximab, Yttrium Y 90 Colloid, Yttrium Y 90 Daclizumab, Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A, Yttrium Y 90 Glass Microspheres, Yttrium Y 90 Monoclonal Antibody B3, Yttrium Y 90 Monoclonal Antibody BrE-3, Yttrium Y 90 Monoclonal Antibody Hu3S193, Yttrium Y 90 Monoclonal Antibody MN-14, Yttrium Y 90 Resin Microspheres, Yttrium Y 90 Tabituximab Barzuxetan, Yttrium Y 90-DOTA-Biotin, Yttrium Y 90-DOTA-di-HSG Peptide IMP-288, Yttrium Y 90-Edotreotide, Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101, Yttrium Y-90 Clivatuzumab Tetraxetan, Yttrium Y-90 Epratuzumab Tetraxetan, Yttrium Y-90 Ibritumomab Tiuxetan, Yttrium Y-90 Tacatuzumab Tetraxetan, Yttrium-90 Polycarbonate Brachytherapy Plaque, Z-Endoxifen Hydrochloride, Zalcitabine, Zalifrelimab, Zalutumumab, Zandelisib, Zanidatamab, Zanolimumab, Zanubrutinib, Zebularine, Zelavespib, Zibotentan, Zinc Finger Nuclease ZFN-603, Zinc Finger Nuclease ZFN-758, Zinostatin, Zinostatin Stimalamer, Zirconium Zr 89 Panitumumab, Ziv-Aflibercept, Zolbetuximab, Zoledronic Acid, Zoptarelin Doxorubicin, Zorifertinib, Zorubicin, Zorubicin Hydrochloride, Zotatifin, Zotiraciclib Citrate, Zuclomiphene Citrate, Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, -Individual Metastasis Stage,Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"M0, M1, M1a, M1b, M1c, MX, cM0 (i+), Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, -Individual Recurrence Status,Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment.,"Yes, Unknown, Not Reported, Not Applicable, Not Allowed to Collect, No, Censored",,FALSE,,,,CDS Imaging v1.0, -Individual Treatment Response,Text term that describes the patient's final outcome after the treatment was administered.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, -Institution,Institutions participating in consortia activities,,"Component, Institution Name, Institution Full Name, Institution Alias, Institution Location State, Institution Location City, Rorid",FALSE,,,,, -Institution Name,"Machine readable name of the institution. (e.g. ArizonaStatUniversity, BostonUniversity, etc.)",,,TRUE,,,,, -Institution Full Name,"Human readable, full name of the institution. (e.g. Arizona State University, Boston University, etc.)",,,TRUE,,,,, -Institution Alias,"Alias of the institution (e.g. ASU, BU, etc.)",,,TRUE,,,,,unique -Institution Location State,"The US state the institution is located in. Use Not Applicable, if not applicable. ","Alabama, Alaska, American Samoa, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, District of Columbia, Florida, Georgia, Guam, Hawaii, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Minor Outlying Islands, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Northern Mariana Islands, Not Applicable, Ohio, Oklahoma, Oregon, Pennsylvania, Puerto Rico, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, U.S. Virgin Islands, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin, Wyoming",,TRUE,,,,, -Institution Location City,The City the institution is located in. ,,,TRUE,,,,, -Rorid,Unique identifier (ROR ID) of an the institution,,,TRUE,,,,, -Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Type, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, -Model_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,,unique -Model Age,"The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)",,,FALSE,,,,,num -Model Age Unit,The unit corresponding to the age provided for this model.,,,FALSE,,,,,str -Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,, -Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, -Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like -Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like -Model Type,The general label used to identify the model type.,,,FALSE,,,,,str -Model Method,The term that describes the general method used to create the model.,,,FALSE,,,,,str -Model Source,"The reference organism from which the model was derived, if applicable. This could be a specific Biospecimen Key, Model Key, mouse type, cell line, or other reference. Provide RRID if available, to link to existing cell line information. Do not use this field to designate an Individual as the source of the model.",,,FALSE,,,,,str -Model Acquisition Type,"The method by which the model was obtained. If applicable, please provide a link to the supplier of the model source.",,,FALSE,,,,,str -Model Graft Source,"If the model is an allograft or xenograft, as indicated by Model Type, please provide a unique identifier associated with the source of the graft material (e.g., RRID, Individual Key, Model Key, Biospecimen Key)",,,FALSE,,,,,str -Model Genotype,"The relevant genotype information associated with the model, including markers, background, etc.",,,FALSE,,,,,str -Model Treatment Type,Text term that describes the kind of treatment applied to the model.,"3-Dimensional Conformal Radiation Therapy, Allogeneic Hematopoietic Stem Cell Transplantation, Autologous Stem Cell Transplantation, Brachytherapy, Cellular Therapy, Chemotherapy, Concurrent Chemoradiation, Conventional Radiotherapy, Electron Beam Radiation Therapy, External Beam Radiation Therapy, High-Dose Rate Brachytherapy, Hormone Therapy, Immunotherapy, Intensity-Modulated Radiation Therapy, Low-Dose Rate Brachytherapy, Not Reported, Organ Transplantation, Palliative Care, Pharmacotherapy, Photon Beam Radiation Therapy, Proton Beam Radiation Therapy, Radiation Therapy, Radiofrequency Ablation, Radiopharmaceutical, Stem Cell Transplant, Stereotactic Body Radiation Therapy, Stereotactic Radiosurgery, Surgical Procedure, Targeted Molecular Therapy, Unknown",,FALSE,,,,, -Model Therapeutic Agent,Text identification of the individual agent(s) used as part of an experimental protocol performed using the model.,"10-Deacetyltaxol, 11C Topotecan, 11D10 AluGel Anti-Idiotype Monoclonal Antibody, 12-Allyldeoxoartemisinin, 13-Deoxydoxorubicin, 14C BMS-275183, 17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521, 2-Deoxy-D-glucose, 2-Ethylhydrazide, 2-Fluoroadenine, 2-Fluorofucose-containing SGN-2FF, 2-Hydroxyestradiol, 2-Hydroxyestrone, 2-Hydroxyflutamide Depot, 2-Hydroxyoleic Acid, 2-Methoxyestradiol, 2-Methoxyestradiol Nanocrystal Colloidal Dispersion, 2-Methoxyestrone, 2-O; 3-O Desulfated Heparin, 2;6-Diaminopurine, 2;6-Dimethoxyquinone, 2'-F-ara-deoxyuridine, 3'-C-ethynylcytidine, 3'-dA Phosphoramidate NUC-7738, 4-Nitroestrone 3-Methyl Ether, 4-Thio-2-deoxycytidine, 4'-Iodo-4'-Deoxydoxorubicin, 5-Aza-4'-thio-2'-deoxycytidine, 5-Fluoro-2-Deoxycytidine, 6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158, 7-Cyanoquinocarcinol, 7-Ethyl-10-Hydroxycamptothecin, 7-Hydroxystaurosporine, 8-Azaguanine, 9-Ethyl 6-Mercaptopurine, 9H-Purine-6Thio-98D, A2A Receptor Antagonist EOS100850, Abagovomab, Abarelix, Abemaciclib, Abemaciclib Mesylate, Abexinostat, Abexinostat Tosylate, Abiraterone, Abiraterone Acetate, Abituzumab, Acai Berry Juice, Acalabrutinib, Acalisib, Aceglatone, Acetylcysteine, Acitretin, Acivicin, Aclacinomycin B, Aclarubicin, Acodazole, Acodazole Hydrochloride, Acolbifene Hydrochloride, Acridine, Acridine Carboxamide, Acronine, Actinium Ac 225 Lintuzumab, Actinium Ac 225-FPI-1434, Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591, Actinomycin C2, Actinomycin C3, Actinomycin F1, Activin Type 2B Receptor Fc Fusion Protein STM 434, Acyclic Nucleoside Phosphonate Prodrug ABI-1968, Ad-RTS-hIL-12, Adagloxad Simolenin, Adavosertib, Adecatumumab, Adenosine A2A Receptor Antagonist AZD4635, Adenosine A2A Receptor Antagonist CS3005, Adenosine A2A Receptor Antagonist NIR178, Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999, Adenosine A2A/A2B Receptor Antagonist AB928, Adenosine A2B Receptor Antagonist PBF-1129, Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201, Adenoviral Brachyury Vaccine ETBX-051, Adenoviral Cancer Vaccine PF-06936308, Adenoviral MUC1 Vaccine ETBX-061, Adenoviral PSA Vaccine ETBX-071, Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001, Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP, Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901, Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE, Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918, Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931, Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3, Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001, Aderbasib, ADH-1, AE37 Peptide/GM-CSF Vaccine, AEE788, Aerosol Gemcitabine, Aerosolized Aldesleukin, Aerosolized Liposomal Rubitecan, Afatinib, Afatinib Dimaleate, Afimoxifene, Afuresertib, Agatolimod Sodium, Agerafenib, Aglatimagene Besadenovec, Agonistic Anti-CD40 Monoclonal Antibody ADC-1013, Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949, Agonistic Anti-OX40 Monoclonal Antibody MEDI6469, AKR1C3-activated Prodrug OBI-3424, AKT 1/2 Inhibitor BAY1125976, AKT Inhibitor ARQ 092, Akt Inhibitor LY2780301, Akt Inhibitor MK2206, Akt Inhibitor SR13668, Akt/ERK Inhibitor ONC201, Alacizumab Pegol, Alanosine, Albumin-binding Cisplatin Prodrug BTP-114, Aldesleukin, Aldoxorubicin, Alectinib, Alefacept, Alemtuzumab, Alestramustine, Alflutinib Mesylate, Algenpantucel-L, Alisertib, Alitretinoin, ALK Inhibitor, ALK Inhibitor ASP3026, ALK Inhibitor PLB 1003, ALK Inhibitor RO5424802, ALK Inhibitor TAE684, ALK Inhibitor WX-0593, ALK-2 Inhibitor TP-0184, ALK-FAK Inhibitor CEP-37440, ALK/c-Met Inhibitor TQ-B3139, ALK/FAK/Pyk2 Inhibitor CT-707, ALK/ROS1/Met Inhibitor TQ-B3101, ALK/TRK Inhibitor TSR-011, Alkotinib, Allodepleted T Cell Immunotherapeutic ATIR101, Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715, Allogeneic Anti-BCMA-CAR T-cells PBCAR269A, Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells, Allogeneic Anti-CD19 CAR T-cells ALLO-501A, Allogeneic Anti-CD19 Universal CAR-T Cells CTA101, Allogeneic Anti-CD19-CAR T-cells PBCAR0191, Allogeneic Anti-CD20 CAR T-cells LUCAR-20S, Allogeneic Anti-CD20-CAR T-cells PBCAR20A, Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22, Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100, Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001, Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001, Allogeneic Cellular Vaccine 1650-G, Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120, Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130, Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A, Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM, Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine, Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo, Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2, Allogeneic Irradiated Melanoma Cell Vaccine CSF470, Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307, Allogeneic Melanoma Vaccine AGI-101H, Allogeneic Natural Killer Cell Line MG4101, Allogeneic Natural Killer Cell Line NK-92, Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01, Allogeneic Renal Cell Carcinoma Vaccine MGN1601, Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19, Allosteric ErbB Inhibitor BDTX-189, Allovectin-7, Almurtide, Alobresib, Alofanib, Alpelisib, Alpha Galactosylceramide, Alpha V Beta 1 Inhibitor ATN-161, Alpha V Beta 8 Antagonist PF-06940434, alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801, Alpha-Gal AGI-134, Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H, Alpha-Thioguanine Deoxyriboside, Alpha-tocopheryloxyacetic Acid, Alsevalimab, Altiratinib, Altretamine, Alvespimycin, Alvespimycin Hydrochloride, Alvocidib, Alvocidib Hydrochloride, Alvocidib Prodrug TP-1287, Amatuximab, Ambamustine, Ambazone, Amblyomin-X, Amcasertib, Ametantrone, Amifostine, Amino Acid Injection, Aminocamptothecin, Aminocamptothecin Colloidal Dispersion, Aminoflavone Prodrug AFP464, Aminopterin, Aminopterin Sodium, Amivantamab, Amolimogene Bepiplasmid, Amonafide L-Malate, Amrubicin, Amrubicin Hydrochloride, Amsacrine, Amsacrine Lactate, Amsilarotene, Amustaline, Amustaline Dihydrochloride, Amuvatinib, Amuvatinib Hydrochloride, Anakinra, Anastrozole, Anaxirone, Ancitabine, Ancitabine Hydrochloride, Andecaliximab, Androgen Antagonist APC-100, Androgen Receptor Antagonist BAY 1161116, Androgen Receptor Antagonist SHR3680, Androgen Receptor Antagonist TAS3681, Androgen Receptor Antagonist TRC253, Androgen Receptor Antisense Oligonucleotide AZD5312, Androgen Receptor Antisense Oligonucleotide EZN-4176, Androgen Receptor Degrader ARV-110, Androgen Receptor Degrader CC-94676, Androgen Receptor Downregulator AZD3514, Androgen Receptor Inhibitor EPI-7386, Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118, Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10, Andrographolide, Androstane Steroid HE3235, Anetumab Ravtansine, Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241, Angiogenesis Inhibitor GT-111, Angiogenesis Inhibitor JI-101, Angiogenesis/Heparanase Inhibitor PG545, Angiopoietin-2-specific Fusion Protein PF-04856884, Anhydrous Enol-oxaloacetate, Anhydrovinblastine, Aniline Mustard, Anlotinib Hydrochloride, Annamycin, Annamycin Liposomal, Annonaceous Acetogenins, Ansamitomicin P-3, Anthramycin, Anthrapyrazole, Anti c-KIT Antibody-drug Conjugate LOP628, Anti-5T4 Antibody-drug Conjugate ASN004, Anti-5T4 Antibody-Drug Conjugate PF-06263507, Anti-5T4 Antibody-drug Conjugate SYD1875, Anti-A33 Monoclonal Antibody KRN330, Anti-A5B1 Integrin Monoclonal Antibody PF-04605412, Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087, Anti-AG7 Antibody Drug Conjugate AbGn-107, Anti-AGS-16 Monoclonal Antibody AGS-16M18, Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME, Anti-AGS-8 Monoclonal Antibody AGS-8M4, Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B, Anti-alpha5beta1 Integrin Antibody MINT1526A, Anti-ANG2 Monoclonal Antibody MEDI-3617, Anti-angiopoietin Monoclonal Antibody AMG 780, Anti-APRIL Monoclonal Antibody BION-1301, Anti-AXL Fusion Protein AVB-S6-500, Anti-AXL/PBD Antibody-drug Conjugate ADCT-601, Anti-B7-H3 Antibody DS-5573a, Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a, Anti-B7-H4 Monoclonal Antibody FPA150, Anti-B7H3 Antibody-drug Conjugate MGC018, Anti-BCMA Antibody SEA-BCMA, Anti-BCMA Antibody-drug Conjugate AMG 224, Anti-BCMA Antibody-drug Conjugate CC-99712, Anti-BCMA Antibody-drug Conjugate GSK2857916, Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA, Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459, Anti-BCMA/CD3 BiTE Antibody AMG 420, Anti-BCMA/CD3 BiTE Antibody AMG 701, Anti-BCMA/CD3 BiTE Antibody REGN5458, Anti-BCMA/PBD ADC MEDI2228, Anti-BTLA Monoclonal Antibody TAB004, Anti-BTN3A Agonistic Monoclonal Antibody ICT01, Anti-c-fms Monoclonal Antibody AMG 820, Anti-c-KIT Monoclonal Antibody CDX 0158, Anti-c-Met Antibody-drug Conjugate HTI-1066, Anti-c-Met Antibody-drug Conjugate TR1801, Anti-c-Met Monoclonal Antibody ABT-700, Anti-c-Met Monoclonal Antibody ARGX-111, Anti-c-Met Monoclonal Antibody HLX55, Anti-c-MET Monoclonal Antibody LY2875358, Anti-C-met Monoclonal Antibody SAIT301, Anti-C4.4a Antibody-Drug Conjugate BAY1129980, Anti-C5aR Monoclonal Antibody IPH5401, Anti-CA19-9 Monoclonal Antibody 5B1, Anti-CA6-DM4 Immunoconjugate SAR566658, Anti-CCR7 Antibody-drug Conjugate JBH492, Anti-CD117 Monoclonal Antibody JSP191, Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1, Anti-CD123 ADC IMGN632, Anti-CD123 Monoclonal Antibody CSL360, Anti-CD123 Monoclonal Antibody KHK2823, Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404, Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A, Anti-CD123/CD3 Bispecific Antibody APVO436, Anti-CD123/CD3 Bispecific Antibody JNJ-63709178, Anti-CD123/CD3 BiTE Antibody SAR440234, Anti-CD137 Agonistic Monoclonal Antibody ADG106, Anti-CD137 Agonistic Monoclonal Antibody AGEN2373, Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017, Anti-CD137 Agonistic Monoclonal Antibody CTX-471, Anti-CD137 Agonistic Monoclonal Antibody LVGN6051, Anti-CD157 Monoclonal Antibody MEN1112, Anti-CD166 Probody-drug Conjugate CX-2009, Anti-CD19 Antibody-drug Conjugate SGN-CD19B, Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003, Anti-CD19 iCAR NK Cells, Anti-CD19 Monoclonal Antibody DI-B4, Anti-CD19 Monoclonal Antibody MDX-1342, Anti-CD19 Monoclonal Antibody MEDI-551, Anti-CD19 Monoclonal Antibody XmAb5574, Anti-CD19-DM4 Immunoconjugate SAR3419, Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL, Anti-CD19/CD22 CAR NK Cells, Anti-CD19/CD3 BiTE Antibody AMG 562, Anti-CD19/CD3 Tetravalent Antibody AFM11, Anti-CD20 Monoclonal Antibody B001, Anti-CD20 Monoclonal Antibody BAT4306F, Anti-CD20 Monoclonal Antibody MIL62, Anti-CD20 Monoclonal Antibody PRO131921, Anti-CD20 Monoclonal Antibody SCT400, Anti-CD20 Monoclonal Antibody TL011, Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002, Anti-CD20-engineered Toxin Body MT-3724, Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323, Anti-CD20/CD3 Monoclonal Antibody REGN1979, Anti-CD20/CD3 Monoclonal Antibody XmAb13676, Anti-CD205 Antibody-drug Conjugate OBT076, Anti-CD22 ADC TRPH-222, Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S, Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A, Anti-CD25 Monoclonal Antibody RO7296682, Anti-CD25-PBD Antibody-drug Conjugate ADCT-301, Anti-CD26 Monoclonal Antibody YS110, Anti-CD27 Agonistic Monoclonal Antibody MK-5890, Anti-CD27L Antibody-Drug Conjugate AMG 172, Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1), Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135, Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05, Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564, Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119, Anti-CD3/CD20 Bispecific Antibody GEN3013, Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424, Anti-CD3/CD7-Ricin Toxin A Immunotoxin, Anti-CD30 Monoclonal Antibody MDX-1401, Anti-CD30 Monoclonal Antibody XmAb2513, Anti-CD30/CD16A Monoclonal Antibody AFM13, Anti-CD30/DM1 Antibody-drug Conjugate F0002, Anti-CD32B Monoclonal Antibody BI-1206, Anti-CD33 Antibody-drug Conjugate IMGN779, Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564, Anti-CD33 Monoclonal Antibody BI 836858, Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633, Anti-CD33/CD3 Bispecific Antibody GEM 333, Anti-CD33/CD3 Bispecific Antibody JNJ-67571244, Anti-CD33/CD3 BiTE Antibody AMG 330, Anti-CD33/CD3 BiTE Antibody AMG 673, Anti-CD352 Antibody-drug Conjugate SGN-CD352A, Anti-CD37 Antibody-Drug Conjugate IMGN529, Anti-CD37 Bispecific Monoclonal Antibody GEN3009, Anti-CD37 MMAE Antibody-drug Conjugate AGS67E, Anti-CD37 Monoclonal Antibody BI 836826, Anti-CD38 Antibody-drug Conjugate STI-6129, Anti-CD38 Monoclonal Antibody MOR03087, Anti-CD38 Monoclonal Antibody SAR442085, Anti-CD38 Monoclonal Antibody TAK-079, Anti-CD38-targeted IgG4-attenuated IFNa TAK-573, Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257, Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342, Anti-CD39 Monoclonal Antibody SRF617, Anti-CD39 Monoclonal Antibody TTX-030, Anti-CD40 Agonist Monoclonal Antibody ABBV-927, Anti-CD40 Agonist Monoclonal Antibody CDX-1140, Anti-CD40 Monoclonal Antibody Chi Lob 7/4, Anti-CD40 Monoclonal Antibody SEA-CD40, Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042, Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428, Anti-CD40L Fc-Fusion Protein BMS-986004, Anti-CD44 Monoclonal Antibody RO5429083, Anti-CD45 Monoclonal Antibody AHN-12, Anti-CD46 Antibody-drug Conjugate FOR46, Anti-CD47 ADC SGN-CD47M, Anti-CD47 Monoclonal Antibody AO-176, Anti-CD47 Monoclonal Antibody CC-90002, Anti-CD47 Monoclonal Antibody Hu5F9-G4, Anti-CD47 Monoclonal Antibody IBI188, Anti-CD47 Monoclonal Antibody IMC-002, Anti-CD47 Monoclonal Antibody SHR-1603, Anti-CD47 Monoclonal Antibody SRF231, Anti-CD47 Monoclonal Antibody TJC4, Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801, Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A, Anti-CD52 Monoclonal Antibody ALLO-647, Anti-CD70 Antibody-Drug Conjugate MDX-1203, Anti-CD70 Antibody-drug Conjugate SGN-CD70A, Anti-CD70 CAR-expressing T Lymphocytes, Anti-CD70 Monoclonal Antibody MDX-1411, Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029, Anti-CD73 Monoclonal Antibody BMS-986179, Anti-CD73 Monoclonal Antibody CPI-006, Anti-CD73 Monoclonal Antibody NZV930, Anti-CD73 Monoclonal Antibody TJ4309, Anti-CD74 Antibody-drug Conjugate STRO-001, Anti-CD98 Monoclonal Antibody IGN523, Anti-CDH6 Antibody-drug Conjugate HKT288, Anti-CEA BiTE Monoclonal Antibody AMG211, Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody, Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2, Anti-CEACAM1 Monoclonal Antibody CM-24, Anti-CEACAM5 Antibody-Drug Conjugate SAR408701, Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47, Anti-CEACAM6 Antibody BAY1834942, Anti-claudin18.2 Monoclonal Antibody AB011, Anti-Claudin18.2 Monoclonal Antibody TST001, Anti-CLDN6 Monoclonal Antibody ASP1650, Anti-CLEC12A/CD3 Bispecific Antibody MCLA117, Anti-CLEVER-1 Monoclonal Antibody FP-1305, Anti-CSF1 Monoclonal Antibody PD-0360324, Anti-CSF1R Monoclonal Antibody IMC-CS4, Anti-CSF1R Monoclonal Antibody SNDX-6352, Anti-CTGF Monoclonal Antibody FG-3019, Anti-CTLA-4 Monoclonal Antibody ADG116, Anti-CTLA-4 Monoclonal Antibody ADU-1604, Anti-CTLA-4 Monoclonal Antibody AGEN1181, Anti-CTLA-4 Monoclonal Antibody BCD-145, Anti-CTLA-4 Monoclonal Antibody HBM4003, Anti-CTLA-4 Monoclonal Antibody MK-1308, Anti-CTLA-4 Monoclonal Antibody ONC-392, Anti-CTLA-4 Monoclonal Antibody REGN4659, Anti-CTLA-4 Probody BMS-986288, Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217, Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841, Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015, Anti-CTLA4 Antibody Fc Fusion Protein KN044, Anti-CTLA4 Monoclonal Antibody BMS-986218, Anti-CXCR4 Monoclonal Antibody PF-06747143, Anti-Denatured Collagen Monoclonal Antibody TRC093, Anti-DKK-1 Monoclonal Antibody LY2812176, Anti-DKK1 Monoclonal Antibody BHQ880, Anti-DLL3/CD3 BiTE Antibody AMG 757, Anti-DLL4 Monoclonal Antibody MEDI0639, Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83, Anti-DR5 Agonist Monoclonal Antibody TRA-8, Anti-DR5 Agonistic Antibody DS-8273a, Anti-DR5 Agonistic Monoclonal Antibody INBRX-109, Anti-EGFR Monoclonal Antibody CPGJ 602, Anti-EGFR Monoclonal Antibody EMD 55900, Anti-EGFR Monoclonal Antibody GC1118, Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX, Anti-EGFR Monoclonal Antibody HLX-07, Anti-EGFR Monoclonal Antibody Mixture MM-151, Anti-EGFR Monoclonal Antibody RO5083945, Anti-EGFR Monoclonal Antibody SCT200, Anti-EGFR Monoclonal Antibody SYN004, Anti-EGFR TAP Antibody-drug Conjugate IMGN289, Anti-EGFR/c-Met Bispecific Antibody EMB-01, Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372, Anti-EGFR/CD16A Bispecific Antibody AFM24, Anti-EGFR/DM1 Antibody-drug Conjugate AVID100, Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013, Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321, Anti-EGFRvIII Antibody Drug Conjugate AMG 595, Anti-EGFRvIII Immunotoxin MR1-1, Anti-EGFRvIII/CD3 BiTE Antibody AMG 596, Anti-EGP-2 Immunotoxin MOC31-PE, Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F, Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F, Anti-Ep-CAM Monoclonal Antibody ING-1, Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310, Anti-EphA2 Monoclonal Antibody DS-8895a, Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547, Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111, Anti-ErbB3 Antibody ISU104, Anti-ErbB3 Monoclonal Antibody AV-203, Anti-ErbB3 Monoclonal Antibody CDX-3379, Anti-ErbB3 Monoclonal Antibody REGN1400, Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141, Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A, Anti-FAP/Interleukin-2 Fusion Protein RO6874281, Anti-FCRH5/CD3 BiTE Antibody BFCR4350A, Anti-FGFR2 Antibody BAY1179470, Anti-FGFR3 Antibody-drug Conjugate LY3076226, Anti-FGFR4 Monoclonal Antibody U3-1784, Anti-FLT3 Antibody-drug Conjugate AGS62P1, Anti-FLT3 Monoclonal Antibody 4G8-SDIEM, Anti-FLT3 Monoclonal Antibody IMC-EB10, Anti-FLT3/CD3 BiTE Antibody AMG 427, Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002, Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202, Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012, Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962, Anti-GARP Monoclonal Antibody ABBV-151, Anti-GCC Antibody-Drug Conjugate MLN0264, Anti-GCC Antibody-Drug Conjugate TAK-164, Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody, Anti-GD2 Monoclonal Antibody hu14.18K322A, Anti-GD2 Monoclonal Antibody MORAb-028, Anti-GD3 Antibody-drug Conjugate PF-06688992, Anti-GITR Agonistic Monoclonal Antibody ASP1951, Anti-GITR Agonistic Monoclonal Antibody BMS-986156, Anti-GITR Agonistic Monoclonal Antibody INCAGN01876, Anti-GITR Monoclonal Antibody GWN 323, Anti-GITR Monoclonal Antibody MK-4166, Anti-Globo H Monoclonal Antibody OBI-888, Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999, Anti-Glypican 3/CD3 Bispecific Antibody ERY974, Anti-GnRH Vaccine PEP223, Anti-gpA33/CD3 Monoclonal Antibody MGD007, Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a, Anti-gremlin-1 Monoclonal Antibody UCB6114, Anti-GRP78 Monoclonal Antibody PAT-SM6, Anti-HA Epitope Monoclonal Antibody MEDI8852, Anti-HB-EGF Monoclonal Antibody KHK2866, Anti-HBEGF Monoclonal Antibody U3-1565, Anti-hepcidin Monoclonal Antibody LY2787106, Anti-HER-2 Bispecific Antibody KN026, Anti-HER2 ADC DS-8201a, Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702, Anti-HER2 Antibody-drug Conjugate A166, Anti-HER2 Antibody-drug Conjugate ARX788, Anti-HER2 Antibody-drug Conjugate BAT8001, Anti-HER2 Antibody-drug Conjugate DP303c, Anti-HER2 Antibody-drug Conjugate MEDI4276, Anti-HER2 Antibody-drug Conjugate RC48, Anti-HER2 Bi-specific Monoclonal Antibody ZW25, Anti-HER2 Bispecific Antibody-drug Conjugate ZW49, Anti-HER2 Immune Stimulator-antibody Conjugate NJH395, Anti-HER2 Monoclonal Antibody B002, Anti-HER2 Monoclonal Antibody CT-P6, Anti-HER2 Monoclonal Antibody HLX22, Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343, Anti-HER2-DM1 ADC B003, Anti-HER2-DM1 Antibody-drug Conjugate GQ1001, Anti-HER2-vc0101 ADC PF-06804103, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302, Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128, Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522, Anti-HER2/MMAE Antibody-drug Conjugate MRG002, Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A, Anti-HER3 Antibody-drug Conjugate U3 1402, Anti-HER3 Monoclonal Antibody GSK2849330, Anti-HGF Monoclonal Antibody TAK-701, Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968, Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1, Anti-HLA-DR Monoclonal Antibody IMMU-114, Anti-HLA-G Antibody TTX-080, Anti-human GITR Monoclonal Antibody AMG 228, Anti-human GITR Monoclonal Antibody TRX518, Anti-ICAM-1 Monoclonal Antibody BI-505, Anti-ICOS Agonist Antibody GSK3359609, Anti-ICOS Agonist Monoclonal Antibody BMS-986226, Anti-ICOS Monoclonal Antibody KY1044, Anti-ICOS Monoclonal Antibody MEDI-570, Anti-IGF-1R Monoclonal Antibody AVE1642, Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022, Anti-IL-1 alpha Monoclonal Antibody MABp1, Anti-IL-13 Humanized Monoclonal Antibody TNX-650, Anti-IL-15 Monoclonal Antibody AMG 714, Anti-IL-8 Monoclonal Antibody BMS-986253, Anti-IL-8 Monoclonal Antibody HuMax-IL8, Anti-ILDR2 Monoclonal Antibody BAY 1905254, Anti-ILT4 Monoclonal Antibody MK-4830, Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A, Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388, Anti-IRF4 Antisense Oligonucleotide ION251, Anti-KIR Monoclonal Antibody IPH 2101, Anti-KSP/Anti-VEGF siRNAs ALN-VSP02, Anti-LAG-3 Monoclonal Antibody IBI-110, Anti-LAG-3 Monoclonal Antibody INCAGN02385, Anti-LAG-3 Monoclonal Antibody LAG525, Anti-LAG-3 Monoclonal Antibody REGN3767, Anti-LAG-3/PD-L1 Bispecific Antibody FS118, Anti-LAG3 Monoclonal Antibody BI 754111, Anti-LAG3 Monoclonal Antibody MK-4280, Anti-LAG3 Monoclonal Antibody TSR-033, Anti-LAMP1 Antibody-drug Conjugate SAR428926, Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181, Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102, Anti-LGR5 Monoclonal Antibody BNC101, Anti-LIF Monoclonal Antibody MSC-1, Anti-LILRB4 Monoclonal Antibody IO-202, Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A, Anti-Ly6E Antibody-Drug Conjugate RG 7841, Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C, Anti-Melanin Monoclonal Antibody PTI-6D2, Anti-mesothelin Antibody-drug Conjugate BMS-986148, Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100, Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A, Anti-mesothelin/MMAE Antibody-drug Conjugate RC88, Anti-Met Monoclonal Antibody Mixture Sym015, Anti-Met/EGFR Monoclonal Antibody LY3164530, Anti-MMP-9 Monoclonal Antibody GS-5745, Anti-MUC1 Monoclonal Antibody BTH1704, Anti-MUC16/CD3 Bispecific Antibody REGN4018, Anti-MUC16/CD3 BiTE Antibody REGN4018, Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A, Anti-MUC17/CD3 BiTE Antibody AMG 199, Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062, Anti-myostatin Monoclonal Antibody LY2495655, Anti-NaPi2b Antibody-drug Conjugate XMT-1592, Anti-NaPi2b Monoclonal Antibody XMT-1535, Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E, Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A, Anti-nf-P2X7 Antibody Ointment BIL-010t, Anti-NRP1 Antibody ASP1948, Anti-Nucleolin Aptamer AS1411, Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A, Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso, Anti-OFA Immunotherapeutic BB-MPI-03, Anti-OX40 Agonist Monoclonal Antibody ABBV-368, Anti-OX40 Agonist Monoclonal Antibody BGB-A445, Anti-OX40 Agonist Monoclonal Antibody PF-04518600, Anti-OX40 Antibody BMS 986178, Anti-OX40 Hexavalent Agonist Antibody INBRX-106, Anti-OX40 Monoclonal Antibody GSK3174998, Anti-OX40 Monoclonal Antibody IBI101, Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256, Anti-PD-1 Checkpoint Inhibitor PF-06801591, Anti-PD-1 Fusion Protein AMP-224, Anti-PD-1 Monoclonal Antibody 609A, Anti-PD-1 Monoclonal Antibody AK105, Anti-PD-1 Monoclonal Antibody AMG 404, Anti-PD-1 Monoclonal Antibody BAT1306, Anti-PD-1 Monoclonal Antibody BCD-100, Anti-PD-1 Monoclonal Antibody BI 754091, Anti-PD-1 Monoclonal Antibody CS1003, Anti-PD-1 Monoclonal Antibody F520, Anti-PD-1 Monoclonal Antibody GLS-010, Anti-PD-1 Monoclonal Antibody HLX10, Anti-PD-1 Monoclonal Antibody HX008, Anti-PD-1 Monoclonal Antibody JTX-4014, Anti-PD-1 Monoclonal Antibody LZM009, Anti-PD-1 Monoclonal Antibody MEDI0680, Anti-PD-1 Monoclonal Antibody MGA012, Anti-PD-1 Monoclonal Antibody SCT-I10A, Anti-PD-1 Monoclonal Antibody Sym021, Anti-PD-1 Monoclonal Antibody TSR-042, Anti-PD-1/Anti-CTLA4 DART Protein MGD019, Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315, Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669, Anti-PD-1/Anti-LAG-3 DART Protein MGD013, Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318, Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172, Anti-PD-1/CD47 Infusion Protein HX009, Anti-PD-1/CTLA-4 Bispecific Antibody AK104, Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752, Anti-PD-1/TIM-3 Bispecific Antibody RO7121661, Anti-PD-1/VEGF Bispecific Antibody AK112, Anti-PD-L1 Monoclonal Antibody A167, Anti-PD-L1 Monoclonal Antibody BCD-135, Anti-PD-L1 Monoclonal Antibody BGB-A333, Anti-PD-L1 Monoclonal Antibody CBT-502, Anti-PD-L1 Monoclonal Antibody CK-301, Anti-PD-L1 Monoclonal Antibody CS1001, Anti-PD-L1 Monoclonal Antibody FAZ053, Anti-PD-L1 Monoclonal Antibody GR1405, Anti-PD-L1 Monoclonal Antibody HLX20, Anti-PD-L1 Monoclonal Antibody IMC-001, Anti-PD-L1 Monoclonal Antibody LY3300054, Anti-PD-L1 Monoclonal Antibody MDX-1105, Anti-PD-L1 Monoclonal Antibody MSB2311, Anti-PD-L1 Monoclonal Antibody RC98, Anti-PD-L1 Monoclonal Antibody SHR-1316, Anti-PD-L1 Monoclonal Antibody TG-1501, Anti-PD-L1 Monoclonal Antibody ZKAB001, Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105, Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046, Anti-PD-L1/CD137 Bispecific Antibody MCLA-145, Anti-PD-L1/IL-15 Fusion Protein KD033, Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244, Anti-PD1 Monoclonal Antibody AGEN2034, Anti-PD1/CTLA4 Bispecific Antibody XmAb20717, Anti-PGF Monoclonal Antibody RO5323441, Anti-PKN3 siRNA Atu027, Anti-PLGF Monoclonal Antibody TB-403, Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4, Anti-PRAME Immunotherapeutic GSK2302032A, Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C, Anti-PRL-3 Monoclonal Antibody PRL3-zumab, Anti-prolactin Receptor Antibody LFA102, Anti-PSCA Monoclonal Antibody AGS-1C4D4, Anti-PSMA Monoclonal Antibody MDX1201-A488, Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704, Anti-PSMA Monoclonal Antibody-MMAE Conjugate, Anti-PSMA/CD28 Bispecific Antibody REGN5678, Anti-PSMA/CD3 Bispecific Antibody CCW702, Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081, Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414, Anti-PSMA/PBD ADC MEDI3726, Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020, Anti-PVRIG Monoclonal Antibody COM701, Anti-RANKL Monoclonal Antibody GB-223, Anti-RANKL Monoclonal Antibody JMT103, Anti-Ribonucleoprotein Antibody ATRC-101, Anti-ROR1 ADC VLS-101, Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002, Anti-S15 Monoclonal Antibody NC318, Anti-sCLU Monoclonal Antibody AB-16B5, Anti-SIRPa Monoclonal Antibody CC-95251, Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E, Anti-TAG-72 Monoclonal Antibody scFV CC-49/218, Anti-TF Monoclonal Antibody ALT-836, Anti-TGF-beta Monoclonal Antibody NIS793, Anti-TGF-beta Monoclonal Antibody SAR-439459, Anti-TGF-beta RII Monoclonal Antibody IMC-TR1, Anti-TIGIT Monoclonal Antibody AB154, Anti-TIGIT Monoclonal Antibody BGB-A1217, Anti-TIGIT Monoclonal Antibody BMS-986207, Anti-TIGIT Monoclonal Antibody COM902, Anti-TIGIT Monoclonal Antibody OMP-313M32, Anti-TIGIT Monoclonal Antibody SGN-TGT, Anti-TIM-3 Antibody BMS-986258, Anti-TIM-3 Monoclonal Antibody BGB-A425, Anti-TIM-3 Monoclonal Antibody INCAGN02390, Anti-TIM-3 Monoclonal Antibody MBG453, Anti-TIM-3 Monoclonal Antibody Sym023, Anti-TIM-3 Monoclonal Antibody TSR-022, Anti-TIM3 Monoclonal Antibody LY3321367, Anti-TIM3 Monoclonal Antibody SHR-1702, Anti-Tissue Factor Monoclonal Antibody MORAb-066, Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711, Anti-TROP2 Antibody-drug Conjugate BAT8003, Anti-TROP2 Antibody-drug Conjugate SKB264, Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a, Anti-TWEAK Monoclonal Antibody RG7212, Anti-VEGF Anticalin PRS-050-PEG40, Anti-VEGF Monoclonal Antibody hPV19, Anti-VEGF/ANG2 Nanobody BI 836880, Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T, Anti-VEGFC Monoclonal Antibody VGX-100, Anti-VEGFR2 Monoclonal Antibody HLX06, Anti-VEGFR2 Monoclonal Antibody MSB0254, Anti-VEGFR3 Monoclonal Antibody IMC-3C5, Anti-VISTA Monoclonal Antibody JNJ 61610588, Antiangiogenic Drug Combination TL-118, Antibody-drug Conjugate ABBV-011, Antibody-drug Conjugate ABBV-085, Antibody-drug Conjugate ABBV-155, Antibody-drug Conjugate ABBV-176, Antibody-drug Conjugate ABBV-838, Antibody-drug Conjugate ADC XMT-1536, Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014, Antibody-Drug Conjugate DFRF4539A, Antibody-drug Conjugate MEDI7247, Antibody-drug Conjugate PF-06647263, Antibody-drug Conjugate PF-06664178, Antibody-drug Conjugate SC-002, Antibody-drug Conjugate SC-003, Antibody-drug Conjugate SC-004, Antibody-drug Conjugate SC-005, Antibody-drug Conjugate SC-006, Antibody-drug Conjugate SC-007, Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008, Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV, Antimetabolite FF-10502, Antineoplastic Agent Combination SM-88, Antineoplastic Vaccine, Antineoplastic Vaccine GV-1301, Antineoplaston A10, Antineoplaston AS2-1, Antisense Oligonucleotide GTI-2040, Antisense Oligonucleotide QR-313, Antitumor B Key Active Component-alpha, Antrodia cinnamomea Supplement, Antroquinonol Capsule, Apalutamide, Apatorsen, Apaziquone, APC8015F, APE1/Ref-1 Redox Inhibitor APX3330, Aphidicoline Glycinate, Apilimod Dimesylate Capsule, Apitolisib, Apolizumab, Apomab, Apomine, Apoptosis Inducer BZL101, Apoptosis Inducer GCS-100, Apoptosis Inducer MPC-2130, Apricoxib, Aprinocarsen, Aprutumab, Aprutumab Ixadotin, AR Antagonist BMS-641988, Arabinoxylan Compound MGN3, Aranose, ARC Fusion Protein SL-279252, Archexin, Arcitumomab, Arfolitixorin, Arginase Inhibitor INCB001158, Arginine Butyrate, Arnebia Indigo Jade Pearl Topical Cream, Arsenic Trioxide, Arsenic Trioxide Capsule Formulation ORH 2014, Artemether Sublingual Spray, Artemisinin Dimer, Artesunate, Arugula Seed Powder, Aryl Hydrocarbon Receptor Antagonist BAY2416964, Aryl Hydrocarbon Receptor Inhibitor IK-175, Asaley, Asciminib, Ascrinvacumab, Ashwagandha Root Powder Extract, ASP4132, Aspacytarabine, Asparaginase, Asparaginase Erwinia chrysanthemi, Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10, Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10, Astuprotimut-R, Asulacrine, Asulacrine Isethionate, Asunercept, At 211 Monoclonal Antibody 81C6, Atamestane, Atezolizumab, Atiprimod, Atiprimod Dihydrochloride, Atiprimod Dimaleate, ATM Inhibitor M 3541, ATM Kinase Inhibitor AZD0156, ATM Kinase Inhibitor AZD1390, Atorvastatin Calcium, Atorvastatin Sodium, ATR Inhibitor RP-3500, ATR Kinase Inhibitor BAY1895344, ATR Kinase Inhibitor M1774, ATR Kinase Inhibitor M6620, ATR Kinase Inhibitor VX-803, Atrasentan Hydrochloride, Attenuated Listeria monocytogenes CRS-100, Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001, Attenuated Measles Virus Encoding SCD Transgene TMV-018, Atuveciclib, Audencel, Auranofin, Aurora A Kinase Inhibitor LY3295668, Aurora A Kinase Inhibitor LY3295668 Erbumine, Aurora A Kinase Inhibitor MK5108, Aurora A Kinase Inhibitor TAS-119, Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076, Aurora B Serine/Threonine Kinase Inhibitor TAK-901, Aurora B/C Kinase Inhibitor GSK1070916A, Aurora kinase A/B inhibitor TT-00420, Aurora Kinase Inhibitor AMG 900, Aurora Kinase Inhibitor BI 811283, Aurora Kinase Inhibitor MLN8054, Aurora Kinase Inhibitor PF-03814735, Aurora Kinase Inhibitor SNS-314, Aurora Kinase Inhibitor TTP607, Aurora Kinase/VEGFR2 Inhibitor CYC116, Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707, Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055, Autologous Anti-BCMA CAR T-cells PHE885, Autologous Anti-BCMA CAR-transduced T-cells KITE-585, Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11, Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053, Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143, Autologous Anti-CD123 CAR-T Cells, Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx, Autologous Anti-CD19 CAR T-cells IM19, Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19, Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19, Autologous Anti-CD19 CAR-CD28 T-cells ET019002, Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01, Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19, Autologous Anti-CD19 T-cell Receptor T cells ET190L1, Autologous Anti-CD19 TAC-T cells TAC01-CD19, Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells, Autologous Anti-CD19/CD22 CAR T-cells AUTO3, Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014, Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells, Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1, Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s, Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes, Autologous Anti-FLT3 CAR T Cells AMG 553, Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202, Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1, Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100, Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes, Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794, Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes, Autologous Anti-PSMA CAR-T Cells P-PSMA-101, Autologous AXL-targeted CAR T-cells CCT301-38, Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B, Autologous BCMA-targeted CAR T Cells CC-98633, Autologous BCMA-targeted CAR T Cells LCAR-B4822M, Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528, Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F, Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022, Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006, Autologous CD123-4SCAR-expressing T-cells 4SCAR123, Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1, Autologous CD19-targeted CAR T Cells CC-97540, Autologous CD19-targeted CAR T Cells JWCAR029, Autologous CD19-targeted CAR-T Cells GC007F, Autologous CD19/PD-1 Bispecific CAR-T Cells, Autologous CD20-4SCAR-expressing T-cells 4SCAR20, Autologous CD22-4SCAR-expressing T-cells 4SCAR22, Autologous CD38-4SCAR-expressing T-cells 4SCAR38, Autologous Clonal Neoantigen T Cells ATL001, Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19, Autologous Deep IL-15 Primed T-cells TRQ15-01, Autologous Dendritic Cell Vaccine ACT2001, Autologous Dendritic Cell-based Immunotherapeutic AV0113, Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa, Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells, Autologous Genetically-modified MAGE-A4 C1032 T Cells, Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858, Autologous HPV16 E7-specific HLA-A*02:01-restricted TCR Gene Engineered Lymphocytes KITE-439, Autologous LMP1/LMP2/EBNA1-specific HLA-A02:01/24:02/11:01-restricted TCR-expressing T-lymphocytes YT-E001, Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718, Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR, Autologous Mesenchymal Stem Cells Apceth_101, Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11, Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC, Autologous Multi-lineage Potential Cells, Autologous Nectin-4/FAP-targeted CAR-T Cells, Autologous NKG2D CAR T-cells CYAD-02, Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01, Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine, Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001, Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101, Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601, Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201, Autologous ROR2-targeted CAR T-cells CCT301-59, Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1, Autologous TCR-engineered T-cells IMA201, Autologous TCR-engineered T-cells IMA202, Autologous TCR-engineered T-cells IMA203, Autologous TCRm-expressing T-cells ET140203, Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG, Autologous Tumor Infiltrating Lymphocytes LN-144, Autologous Tumor Infiltrating Lymphocytes LN-145, Autologous Tumor Infiltrating Lymphocytes LN-145-S1, Autologous Tumor Infiltrating Lymphocytes MDA-TIL, Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T, Avadomide, Avadomide Hydrochloride, Avapritinib, Avdoralimab, Avelumab, Aviscumine, Avitinib Maleate, Axalimogene Filolisbac, Axatilimab, Axicabtagene Ciloleucel, Axitinib, AXL Inhibitor DS-1205c, AXL Inhibitor SLC-391, AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M, AXL/ FLT3/VEGFR2 Inhibitor KC1036, Axl/Mer Inhibitor INCB081776, Axl/Mer Inhibitor PF-07265807, Azacitidine, Azapicyl, Azaribine, Azaserine, Azathioprine, Azimexon, Azintuxizumab Vedotin, Aziridinylbenzoquinone RH1, Azotomycin, Azurin:50-77 Cell Penetrating Peptide p28, B-Raf/VEGFR-2 Inhibitor RAF265, Babaodan Capsule, Bacillus Calmette-Guerin Substrain Connaught Live Antigen, Bactobolin, Bafetinib, Balixafortide, Balstilimab, Baltaleucel-T, Banoxantrone, Barasertib, Bardoxolone, Bardoxolone Methyl, Baricitinib, Batabulin, Batabulin Sodium, Batimastat, Bavituximab, Bazedoxifene, Bazlitoran, BC-819 Plasmid/Polyethylenimine Complex, BCG Solution, BCG Tokyo-172 Strain Solution, BCG Vaccine, Bcl-2 Inhibitor APG 2575, Bcl-2 Inhibitor BCL201, Bcl-2 Inhibitor BGB-11417, Bcl-2 Inhibitor LP-108, Bcl-2 Inhibitor S65487, Bcl-Xs Adenovirus Vaccine, BCMA x CD3 T-cell Engaging Antibody CC-93269, BCMA-CD19 Compound CAR T Cells, BCMA/CD3e Tri-specific T-cell Activating Construct HPN217, Bcr-Abl Kinase Inhibitor K0706, Bcr-Abl Kinase Inhibitor PF-114, BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351, Beauvericin, Becatecarin, Belagenpumatucel-L, Belantamab Mafodotin, Belapectin, Belimumab, Belinostat, Belotecan Hydrochloride, Belvarafenib, Belzutifan, Bemarituzumab, Bemcentinib, Bempegaldesleukin, Benaxibine, Bendamustine, Bendamustine Hydrochloride, Bendamustine-containing Nanoparticle-based Formulation RXDX-107, Benzaldehyde Dimethane Sulfonate, Benzoylphenylurea, Berberine Chloride, Bermekimab, Bersanlimab, Berubicin Hydrochloride, Berzosertib, BET Bromodomain Inhibitor ZEN-3694, BET Inhibitor ABBV-744, BET Inhibitor BAY1238097, BET inhibitor BI 894999, BET Inhibitor BMS-986158, BET Inhibitor CC-90010, BET Inhibitor CPI-0610, BET Inhibitor FT-1101, BET Inhibitor GS-5829, BET Inhibitor GSK2820151, BET Inhibitor INCB054329, BET Inhibitor INCB057643, BET Inhibitor RO6870810, BET-bromodomain Inhibitor ODM-207, Beta Alethine, Beta-Carotene, Beta-elemene, Beta-Glucan, Beta-Glucan MM-10-001, Beta-lapachone Prodrug ARQ 761, Beta-Thioguanine Deoxyriboside, Betaglucin Gel, Betulinic Acid, Bevacizumab, Bexarotene, Bexmarilimab, BF-200 Gel Formulation, BH3 Mimetic ABT-737, Bi-functional Alkylating Agent VAL-083, Bicalutamide, Bimiralisib, Binetrakin, Binimetinib, Bintrafusp Alfa, Birabresib, Birinapant, Bis(choline)tetrathiomolybdate, Bisantrene, Bisantrene Hydrochloride, Bisnafide, Bisnafide Dimesylate, Bispecific Antibody 2B1, Bispecific Antibody AGEN1223, Bispecific Antibody AMG 509, Bispecific Antibody GS-1423, Bispecific Antibody MDX-H210, Bispecific Antibody MDX447, Bisthianostat, BiTE Antibody AMG 910, Bivalent BRD4 Inhibitor AZD5153, Bizalimogene Ralaplasmid, Bizelesin, BL22 Immunotoxin, Black Cohosh, Black Raspberry Nectar, Bleomycin, Bleomycin A2, Bleomycin B2, Bleomycin Sulfate, Blinatumomab, Blueberry Powder Supplement, BMI1 Inhibitor PTC596, BMS-184476, BMS-188797, BMS-214662, BMS-275183, Boanmycin Hydrochloride, Bomedemstat, Boronophenylalanine-Fructose Complex, Bortezomib, Bosutinib, Bosutinib Monohydrate, Botanical Agent BEL-X-HG, Botanical Agent LEAC-102, Bovine Cartilage, Bozitinib, BP-Cx1-Platinum Complex BP-C1, BR96-Doxorubicin Immunoconjugate, Brachyury-expressing Yeast Vaccine GI-6301, BRAF Inhibitor, BRAF Inhibitor ARQ 736, BRAF Inhibitor BGB-3245, BRAF Inhibitor PLX8394, BRAF(V600E) Kinase Inhibitor ABM-1310, BRAF(V600E) Kinase Inhibitor RO5212054, BRAF/EGFR Inhibitor BGB-283, BRAFV600/PI3K Inhibitor ASN003, BRD4 Inhibitor PLX2853, BRD4 Inhibitor PLX51107, Breflate, Brentuximab, Brentuximab Vedotin, Brequinar, Brequinar Sodium, Briciclib Sodium, Brigatinib, Brilanestrant, Brimonidine Tartrate Nanoemulsion OCU-300, Brivanib, Brivanib Alaninate, Brivudine, Brivudine Phosphoramidate, Broad-Spectrum Human Papillomavirus Vaccine V505, Broccoli Sprout/Broccoli Seed Extract Supplement, Bromacrylide, Bromebric Acid, Bromocriptine Mesylate, Brontictuzumab, Brostacillin Hydrochloride, Brostallicin, Broxuridine, Bruceanol A, Bruceanol B, Bruceanol C, Bruceanol D, Bruceanol E, Bruceanol F, Bruceanol G, Bruceanol H, Bruceantin, Bryostatin 1, BTK Inhibitor ARQ 531, BTK Inhibitor CT-1530, BTK Inhibitor DTRMWXHS-12, BTK Inhibitor HZ-A-018, BTK Inhibitor ICP-022, BTK Inhibitor LOXO-305, BTK Inhibitor M7583, BTK inhibitor TG-1701, Budigalimab, Budotitane, Bufalin, Buparlisib, Burixafor, Burixafor Hydrobromide, Burosumab, Buserelin, Bushen Culuan Decoction, Bushen-Jianpi Decoction, Busulfan, Buthionine Sulfoximine, BXQ-350 Nanovesicle Formulation, c-Kit Inhibitor PLX9486, c-Met Inhibitor ABN401, c-Met Inhibitor AL2846, c-Met Inhibitor AMG 208, c-Met Inhibitor AMG 337, c-Met Inhibitor GST-HG161, c-Met Inhibitor HS-10241, c-Met Inhibitor JNJ-38877605, c-Met Inhibitor MK2461, c-Met Inhibitor MK8033, c-Met Inhibitor MSC2156119J, C-myb Antisense Oligonucleotide G4460, c-raf Antisense Oligonucleotide ISIS 5132, C-VISA BikDD:Liposome, C/EBP Beta Antagonist ST101, CAB-ROR2-ADC BA3021, Cabazitaxel, Cabiralizumab, Cabozantinib, Cabozantinib S-malate, Cactinomycin, Caffeic Acid Phenethyl Ester, CAIX Inhibitor DTP348, CAIX Inhibitor SLC-0111, Calaspargase Pegol-mknl, Calcitriol, Calcium Release-activated Channel Inhibitor CM4620, Calcium Release-activated Channels Inhibitor RP4010, Calcium Saccharate, Calculus bovis/Moschus/Olibanum/Myrrha Capsule, Calicheamicin Gamma 1I, Camidanlumab Tesirine, Camptothecin, Camptothecin Analogue TLC388, Camptothecin Glycoconjugate BAY 38-3441, Camptothecin Sodium, Camptothecin-20(S)-O-Propionate Hydrate, Camrelizumab, Camsirubicin, Cancell, Cancer Peptide Vaccine S-588410, Canerpaturev, Canertinib Dihydrochloride, Canfosfamide, Canfosfamide Hydrochloride, Cannabidiol, Cantrixil, Cantuzumab Ravtansine, Capecitabine, Capecitabine Rapidly Disintegrating Tablet, Capivasertib, Capmatinib, Captopril, CAR T-Cells AMG 119, Caracemide, Carbendazim, Carbetimer, Carbogen, Carbon C 14-pamiparib, Carboplatin, Carboquone, Carboxyamidotriazole, Carboxyamidotriazole Orotate, Carboxyphenyl Retinamide, Carfilzomib, Caricotamide/Tretazicar, Carlumab, Carmofur, Carmustine, Carmustine Implant, Carmustine in Ethanol, Carmustine Sustained-Release Implant Wafer, Carotuximab, Carubicin, Carubicin Hydrochloride, Carzelesin, Carzinophilin, Cathelicidin LL-37, Cationic Liposome-Encapsulated Paclitaxel, Cationic Peptide Cream Cypep-1, Catumaxomab, CBP/beta-catenin Antagonist PRI-724, CBP/beta-catenin Modulator E7386, CCR2 Antagonist CCX872-B, CCR2 Antagonist PF-04136309, CCR2/CCR5 Antagonist BMS-813160, CCR4 Inhibitor FLX475, CD11b Agonist GB1275, CD123-CD33 Compound CAR T Cells, CD123-specific Targeting Module TM123, CD20-CD19 Compound CAR T Cells, CD28/ICOS Antagonist ALPN-101, CD4-specific Telomerase Peptide Vaccine UCPVax, CD40 Agonist Monoclonal Antibody CP-870;893, CD40 Agonistic Monoclonal Antibody APX005M, CD44 Targeted Agent SPL-108, CD44v6-specific CAR T-cells, CD47 Antagonist ALX148, CD73 Inhibitor AB680, CD73 Inhibitor LY3475070, CD80-Fc Fusion Protein ALPN-202, CD80-Fc Fusion Protein FPT155, CDC7 Inhibitor TAK-931, CDC7 Kinase Inhibitor BMS-863233, CDC7 Kinase Inhibitor LY3143921 Hydrate, CDC7 Kinase Inhibitor NMS-1116354, CDK Inhibitor AT7519, CDK Inhibitor R547, CDK Inhibitor SNS-032, CDK/JAK2/FLT3 Inhibitor TG02 Citrate, CDK1 Inhibitor BEY1107, CDK1/2/4 Inhibitor AG-024322, CDK2 Inhibitor PF-07104091, CDK2/4/6/FLT3 Inhibitor FN-1501, CDK2/5/9 Inhibitor CYC065, CDK4 Inhibitor P1446A-05, CDK4/6 Inhibitor, CDK4/6 Inhibitor BPI-16350, CDK4/6 Inhibitor CS3002, CDK4/6 Inhibitor FCN-437, CDK4/6 Inhibitor G1T38, CDK4/6 Inhibitor HS-10342, CDK4/6 Inhibitor SHR6390, CDK4/6 Inhibitor TQB3616, CDK7 Inhibitor CT7001, CDK7 Inhibitor SY-1365, CDK7 Inhibitor SY-5609, CDK8/19 Inhibitor SEL 120, CDK9 Inhibitor AZD4573, CEA-MUC-1-TRICOM Vaccine CV301, CEA-targeting Agent RG6123, CEBPA-targeting saRNA MTL-CEBPA Liposome, Cedazuridine, Cedazuridine/Azacitidine Combination Agent ASTX030, Cedazuridine/Decitabine Combination Agent ASTX727, Cedefingol, Cediranib, Cediranib Maleate, Celecoxib, Cell Cycle Checkpoint/DNA Repair Antagonist IC83, Cemadotin, Cemadotin Hydrochloride, Cemiplimab, Cenersen, Cenisertib, CENP-E Inhibitor GSK-923295, Ceralasertib, Ceramide Nanoliposome, Cerdulatinib, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282, Cereblon Modulator CC-90009, Cergutuzumab Amunaleukin, Ceritinib, Cesalin, cEt KRAS Antisense Oligonucleotide AZD4785, Cetrelimab, Cetuximab, Cetuximab Sarotalocan, Cetuximab-IR700 Conjugate RM-1929, Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY), Cevipabulin, Cevipabulin Fumarate, Cevipabulin Succinate, Cevostamab, cFMS Tyrosine Kinase Inhibitor ARRY-382, Chaparrin, Chaparrinone, Checkpoint Kinase Inhibitor AZD7762, Checkpoint Kinase Inhibitor XL844, Chemotherapy, Chiauranib, Chimeric Monoclonal Antibody 81C6, ChiNing Decoction, Chk1 Inhibitor CCT245737, Chk1 Inhibitor GDC-0425, Chk1 Inhibitor GDC-0575, CHK1 Inhibitor MK-8776, CHK1 Inhibitor PF-477736, Chlorambucil, Chlorodihydropyrimidine, Chloroquine, Chloroquinoxaline Sulfonamide, Chlorotoxin, Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes, Chlorozotocin, Choline Kinase Alpha Inhibitor TCD-717, CHP-NY-ESO-1 Peptide Vaccine IMF-001, Chromomycin A3, Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement, Cibisatamab, Ciclopirox Prodrug CPX-POM, Cidan Herbal Capsule, Ciforadenant, Cilengitide, Ciltacabtagene Autoleucel, Cimetidine, Cinacalcet Hydrochloride, Cinobufagin, Cinobufotalin, Cinrebafusp Alfa, Cintirorgon, Cintredekin Besudotox, Cirmtuzumab, cis-Urocanic Acid, Cisplatin, Cisplatin Liposomal, Cisplatin-E Therapeutic Implant, Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6, Citarinostat, Citatuzumab Bogatox, Cixutumumab, CK1alpha/CDK7/CDK9 Inhibitor BTX-A51, CK2-targeting Synthetic Peptide CIGB-300, CL 246738, Cladribine, Clanfenur, Clarithromycin, Class 1/4 Histone Deacetylase Inhibitor OKI-179, Clinical Trial, Clinical Trial Agent, Clioquinol, Clivatuzumab, Clodronate Disodium, Clodronic Acid, Clofarabine, Clomesone, Clomiphene, Clomiphene Citrate, Clostridium Novyi-NT Spores, Cobimetinib, Cobolimab, Cobomarsen, Codrituzumab, Coenzyme Q10, Cofetuzumab Pelidotin, Colchicine-Site Binding Agent ABT-751, Cold Contaminant-free Iobenguane I-131, Colloidal Gold-Bound Tumor Necrosis Factor, Colorectal Cancer Peptide Vaccine PolyPEPI1018, Colorectal Tumor-Associated Peptides Vaccine IMA910, Coltuximab Ravtansine, Combretastatin, Combretastatin A-1, Combretastatin A1 Diphosphate, Commensal Bacterial Strain Formulation VE800, Compound Kushen Injection, Conatumumab, Conbercept, Concentrated Lingzhi Mushroom Extract, Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011, Copanlisib, Copanlisib Hydrochloride, Copper Cu 64-ATSM, Copper Cu 67 Tyr3-octreotate, Copper Gluconate, Cord Blood Derived CAR T-Cells, Cord Blood-derived Expanded Natural Killer Cells PNK-007, Cordycepin, Cordycepin Triphosphate, Coriolus Versicolor Extract, Corticorelin Acetate, Cortisone Acetate, Cosibelimab, Cositecan, Coxsackievirus A21, Coxsackievirus V937, CpG Oligodeoxynucleotide GNKG168, Crenolanib, Crenolanib Besylate, Crizotinib, Crolibulin, Cryptophycin, Cryptophycin 52, Crystalline Genistein Formulation AXP107-11, CSF-1R Inhibitor BLZ945, CSF1R Inhibitor ABSK021, CSF1R Inhibitor DCC-3014, CSF1R Inhibitor PLX73086, CT2584 HMS, CTLA-4-directed Probody BMS-986249, Curcumin, Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110, Cusatuzumab, Custirsen Sodium, CXC Chemokine Receptor 2 Antagonist AZD5069, CXCR1/2 Inhibitor SX-682, CXCR2 Antagonist QBM076, CXCR4 Antagonist BL-8040, CXCR4 Antagonist USL311, CXCR4 Inhibitor Q-122, CXCR4 Peptide Antagonist LY2510924, CXCR4/E-selectin Antagonist GMI-1359, Cyclin-dependent Kinase 8/19 Inhibitor BCD 115, Cyclin-dependent Kinase Inhibitor PF-06873600, Cyclodextrin-Based Polymer-Camptothecin CRLX101, Cyclodisone, Cycloleucine, Cyclopentenyl Cytosine, Cyclophosphamide, Cyclophosphamide Anhydrous, Cyclosporine, CYL-02 Plasmid DNA, CYP11A1 inhibitor ODM-208, CYP11A1 Inhibitor ODM-209, CYP17 Inhibitor CFG920, CYP17 Lyase Inhibitor ASN001, CYP17/Androgen Receptor Inhibitor ODM 204, CYP17/CYP11B2 Inhibitor LAE001, Cyproterone, Cyproterone Acetate, Cytarabine, Cytarabine Monophosphate Prodrug MB07133, Cytarabine-asparagine Prodrug BST-236, Cytidine Analog RX-3117, Cytochlor, Cytokine-based Biologic Agent IRX-2, D-methionine Formulation MRX-1024, DAB389 Epidermal Growth Factor, Dabrafenib, Dabrafenib Mesylate, Dacarbazine, Dacetuzumab, DACH Polymer Platinate AP5346, DACH-Platin Micelle NC-4016, Daclizumab, Dacomitinib, Dacplatinum, Dactinomycin, Dactolisib, Dactolisib Tosylate, Dalantercept, Dalotuzumab, Daniquidone, Danusertib, Danvatirsen, Daporinad, Daratumumab, Daratumumab and Hyaluronidase-fihj, Daratumumab/rHuPH20, Darinaparsin, Darleukin, Darolutamide, Daromun, Dasatinib, Daunorubicin, Daunorubicin Citrate, Daunorubicin Hydrochloride, DEC-205/NY-ESO-1 Fusion Protein CDX-1401, Decitabine, Decitabine and Cedazuridine, Defactinib, Defactinib Hydrochloride, Deferoxamine, Deferoxamine Mesylate, Degarelix, Degarelix Acetate, Delanzomib, Delolimogene Mupadenorepvec, Demcizumab, Demecolcine, Demplatin Pegraglumer, Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466, Dendritic Cell Vaccine, Dendritic Cell-Autologous Lung Tumor Vaccine, Dendritic Cell-targeting Lentiviral Vector ID-LV305, Denenicokin, Dengue Virus Adjuvant PV-001-DV, Denibulin, Denibulin Hydrochloride, Denileukin Diftitox, Denintuzumab Mafodotin, Denosumab, Deoxycytidine Analogue TAS-109, Deoxycytidine Analogue TAS-109 Hydrochloride, Depatuxizumab, Depatuxizumab Mafodotin, Derazantinib, Deslorelin, Deslorelin Acetate, Detirelix, Detorubicin, Deuteporfin, Deuterated Enzalutamide, Devimistat, Dexamethason, Dexamethasone, Dexamethasone Phosphate, Dexamethasone Sodium Phosphate, Dexanabinol, Dexrazoxane, Dexrazoxane Hydrochloride, Dezaguanine, Dezaguanine Mesylate, Dezapelisib, DHA-Paclitaxel, DHEA Mustard, DI-Leu16-IL2 Immunocytokine, Dianhydrogalactitol, Diarylsulfonylurea Compound ILX-295501, Diazepinomicin, Diaziquone, Diazooxonorleucine, Dibrospidium Chloride, Dichloroallyl Lawsone, Dicycloplatin, Didox, Dienogest, Diethylnorspermine, Digitoxin, Digoxin, Dihydro-5-Azacytidine, Dihydrolenperone, Dihydroorotate Dehydrogenase Inhibitor AG-636, Dihydroorotate Dehydrogenase Inhibitor BAY2402234, Diindolylmethane, Dilpacimab, Dimethylmyleran, Dinaciclib, Dinutuximab, Dioscorea nipponica Makino Extract DNE3, Diphencyprone, Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777, Ditiocarb, DKK1-Neutralizing Monoclonal Antibody DKN-01, DM-CHOC-PEN, DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015, DNA Interference Oligonucleotide PNT2258, DNA Minor Groove Binding Agent SG2000, DNA Plasmid Encoding Interleukin-12 INO-9012, DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151, DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457, DNA Vaccine VB10.16, DNA-dependent Protein Kinase Inhibitor VX-984, DNA-PK inhibitor AZD7648, DNA-PK/PI3K-delta Inhibitor BR101801, DNA-PK/TOR Kinase Inhibitor CC-115, DNMT1 Inhibitor NTX-301, DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98, Docetaxel, Docetaxel Anhydrous, Docetaxel Emulsion ANX-514, Docetaxel Formulation CKD-810, Docetaxel Lipid Microspheres, Docetaxel Nanoparticle CPC634, Docetaxel Polymeric Micelles, Docetaxel-loaded Nanopharmaceutical CRLX301, Docetaxel-PNP, Docetaxel/Ritonavir, Dociparstat sodium, Dolastatin 10, Dolastatin 15, Domatinostat, Donafenib, Dopamine-Somatostatin Chimeric Molecule BIM-23A760, Dostarlimab, Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703, Dovitinib, Dovitinib Lactate, Doxazosin, Doxercalciferol, Doxifluridine, Doxorubicin, Doxorubicin Hydrochloride, Doxorubicin Prodrug L-377;202, Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370, Doxorubicin-Eluting Beads, Doxorubicin-HPMA Conjugate, Doxorubicin-loaded EGFR-targeting Nanocells, Doxorubicin-Magnetic Targeted Carrier Complex, DPT/BCG/Measles/Serratia/Pneumococcus Vaccine, DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine, DPX-E7 HPV Vaccine, DR5 HexaBody Agonist GEN1029, DR5-targeting Tetrameric Nanobody Agonist TAS266, Dromostanolone Propionate, Drozitumab, DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555, Dual IGF-1R/InsR Inhibitor BMS-754807, Dual Variable Domain Immunoglobulin ABT-165, Dual-affinity B7-H3/CD3-targeted Protein MGD009, Dubermatinib, Duborimycin, Dulanermin, Duligotuzumab, Dupilumab, Durvalumab, Dusigitumab, dUTPase/DPD Inhibitor TAS-114, Duvelisib, Duvortuxizumab, Dynemicin, Dynemicin A, E2F1 Pathway Activator ARQ 171, EBNA-1 inhibitor VK-2019, Echinomycin, Ecromeximab, Edatrexate, Edelfosine, Edicotinib, Edodekin alfa, Edotecarin, Edrecolomab, EED Inhibitor MAK683, Efatutazone, Efatutazone Dihydrochloride, Efizonerimod, Eflornithine, Eflornithine Hydrochloride, Eftilagimod Alpha, Eftozanermin Alfa, Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205, Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621, EGb761, EGFR Antagonist Hemay022, EGFR Antisense DNA BB-401, EGFR Inhibitor AZD3759, EGFR Inhibitor BIBX 1382, EGFR Inhibitor DBPR112, EGFR Inhibitor PD-168393, EGFR Inhibitor TY-9591, EGFR Mutant-selective Inhibitor TQB3804, EGFR Mutant-specific Inhibitor BPI-7711, EGFR Mutant-specific Inhibitor CK-101, EGFR Mutant-specific Inhibitor D-0316, EGFR Mutant-specific Inhibitor ZN-e4, EGFR T790M Antagonist BPI-15086, EGFR T790M Inhibitor HS-10296, EGFR/EGFRvIII Inhibitor WSD0922-FU, EGFR/FLT3/Abl Inhibitor SKLB1028, EGFR/HER1/HER2 Inhibitor PKI166, EGFR/HER2 Inhibitor AP32788, EGFR/HER2 Inhibitor AV-412, EGFR/HER2 Inhibitor DZD9008, EGFR/HER2 Kinase Inhibitor TAK-285, EGFR/TGFb Fusion Monoclonal Antibody BCA101, EGFR/VEGFR/RET Inhibitor HA121-28, Eicosapentaenoic Acid, eIF4E Antisense Oligonucleotide ISIS 183750, Elacestrant, Elacytarabine, Elagolix, Elbasvir/Grazoprevir, Elesclomol, Elesclomol Sodium, Elgemtumab, Elinafide, Elisidepsin, Elliptinium, Elliptinium Acetate, Elmustine, Elotuzumab, Elpamotide, Elsamitrucin, Eltanexor, Emactuzumab, Emapalumab, Emepepimut-S, Emibetuzumab, Emitefur, Emofolin Sodium, Empesertib, Enadenotucirev, Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A, Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641, Enasidenib, Enasidenib Mesylate, Enavatuzumab, Encapsulated Rapamycin, Encelimab, Enclomiphene, Enclomiphene Citrate, Encorafenib, Endothelin B Receptor Blocker ENB 003, Endothelin Receptor Type A Antagonist YM598, Enfortumab Vedotin, Engineered Human Umbilical Vein Endothelial Cells AB-205, Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240, Engineered Toxin Body Targeting CD38 TAK-169, Engineered Toxin Body Targeting HER2 MT-5111, Eniluracil/5-FU Combination Tablet, Enloplatin, Enoblituzumab, Enobosarm, Enoticumab, Enpromate, Ensartinib, Ensituximab, Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride, Enterococcus gallinarum Strain MRx0518, Entinostat, Entolimod, Entospletinib, Entrectinib, Envafolimab, Enzalutamide, Enzastaurin, Enzastaurin Hydrochloride, EP2/EP4 Antagonist TPST-1495, EP4 Antagonist INV-1120, EP4 Antagonist ONO-4578, Epacadostat, Epcoritamab, EphA2-targeting Bicycle Toxin Conjugate BT5528, Epipodophyllotoxin Analog GL331, Epipropidine, Epirubicin, Epirubicin Hydrochloride, Epitinib Succinate, Epitiostanol, Epothilone Analog UTD1, Epothilone KOS-1584, Epratuzumab, Epratuzumab-cys-tesirine, ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471, ERa36 Modulator Icaritin, Erastin Analogue PRLX 93936, Erbulozole, Erdafitinib, Eribulin, Eribulin Mesylate, ERK 1/2 Inhibitor ASTX029, ERK Inhibitor CC-90003, ERK Inhibitor GDC-0994, ERK Inhibitor LTT462, ERK Inhibitor MK-8353, ERK1/2 Inhibitor ASN007, ERK1/2 Inhibitor HH2710, ERK1/2 Inhibitor JSI-1187, ERK1/2 Inhibitor KO-947, ERK1/2 Inhibitor LY3214996, Erlotinib, Erlotinib Hydrochloride, Ertumaxomab, Erythrocyte-encapsulated L-asparaginase Suspension, Esorubicin, Esorubicin Hydrochloride, Esperamicin A1, Essiac, Esterified Estrogens, Estradiol Valerate, Estramustine, Estramustine Phosphate Sodium, Estrogen Receptor Agonist GTx-758, Estrogens; Conjugated, Etalocib, Etanercept, Etanidazole, Etaracizumab, Etarotene, Ethaselen, Ethinyl Estradiol, Ethyleneimine, Ethylnitrosourea, Etidronate-Cytarabine Conjugate MBC-11, Etigilimab, Etirinotecan Pegol, Etoglucid, Etoposide, Etoposide Phosphate, Etoposide Toniribate, Etoprine, Etoricoxib, Ets-family Transcription Factor Inhibitor TK216, Everolimus, Everolimus Tablets for Oral Suspension, Evofosfamide, Ex Vivo-expanded Autologous T Cells IMA101, Exatecan Mesylate, Exatecan Mesylate Anhydrous, Exemestane, Exicorilant, Exisulind, Extended Release Flucytosine, Extended Release Metformin Hydrochloride, Extended-release Onapristone, Ezabenlimab, EZH1/2 Inhibitor DS-3201, EZH1/2 Inhibitor HH2853, EZH2 inhibitor CPI-0209, EZH2 Inhibitor CPI-1205, EZH2 Inhibitor PF-06821497, EZH2 Inhibitor SHR2554, F16-IL2 Fusion Protein, FACT Complex-targeting Curaxin CBL0137, Factor VII-targeting Immunoconjugate Protein ICON-1, Factor VIIa Inhibitor PCI-27483, Fadraciclib, Fadrozole Hydrochloride, FAK Inhibitor GSK2256098, FAK Inhibitor PF-00562271, FAK Inhibitor VS-4718, FAK/ALK/ROS1 Inhibitor APG-2449, Falimarev, Famitinib, FAP/4-1BB-targeting DARPin MP0310, FAP/4-1BB-targeting Fusion Protein RO7122290, Farletuzumab, Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123, Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells, Fas Receptor Agonist APO010, Fascin Inhibitor NP-G2-044, FASN Inhibitor TVB-2640, Favezelimab, Fazarabine, Fc-engineered Anti-CD40 Agonist Antibody 2141-V11, Febuxostat, Fedratinib, Fedratinib Hydrochloride, Feladilimab, Felzartamab, Fenebrutinib, Fenretinide, Fenretinide Lipid Matrix, Fenretinide Phospholipid Suspension ST-001, FGF Receptor Antagonist HGS1036, FGF/FGFR Pathway Inhibitor E7090, FGFR Inhibitor ASP5878, FGFR Inhibitor AZD4547, FGFR Inhibitor CPL304110, FGFR Inhibitor Debio 1347, FGFR Inhibitor TAS-120, FGFR/CSF-1R Inhibitor 3D185, FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999, FGFR1/2/3 Inhibitor HMPL-453, FGFR2 Inhibitor RLY-4008, FGFR4 Antagonist INCB062079, FGFR4 Inhibitor BLU 9931, FGFR4 Inhibitor FGF401, FGFR4 Inhibitor H3B-6527, FGFR4 Inhibitor ICP-105, Fianlimab, Fibromun, Ficlatuzumab, Figitumumab, Filanesib, Filgotinib, Filgrastim, Fimaporfin A, Fimepinostat, Firtecan Pegol, Fisogatinib, Flanvotumab, Flotetuzumab, Floxuridine, FLT3 Inhibitor FF-10101 Succinate, FLT3 Inhibitor HM43239, FLT3 Inhibitor SKI-G-801, Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01, FLT3 Tyrosine Kinase Inhibitor TTT-3002, FLT3/ABL/Aurora Kinase Inhibitor KW-2449, FLT3/CDK4/6 Inhibitor FLX925, FLT3/FGFR Dual Kinase Inhibitor MAX-40279, FLT3/KIT Kinase Inhibitor AKN-028, FLT3/KIT/CSF1R Inhibitor NMS-03592088, Flt3/MerTK Inhibitor MRX-2843, Fludarabine, Fludarabine Phosphate, Flumatinib, Flumatinib Mesylate, Fluorine F 18 Ara-G, Fluorodopan, Fluorouracil, Fluorouracil Implant, Fluorouracil-E Therapeutic Implant, Fluoxymesterone, Flutamide, Fluvastatin, Fluvastatin Sodium, Fluzoparib, FMS Inhibitor JNJ-40346527, Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate, Folate Receptor Targeted Epothilone BMS753493, Folate Receptor-Targeted Tubulysin Conjugate EC1456, Folate Receptor-Targeted Vinca Alkaloid EC0489, Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225, Folate-FITC, Folic Acid, Folitixorin, Foretinib, Foritinib Succinate, Formestane, Forodesine Hydrochloride, Fosaprepitant, Fosbretabulin, Fosbretabulin Disodium, Fosbretabulin Tromethamine, Fosgemcitabine Palabenamide, Fosifloxuridine Nafalbenamide, Foslinanib, Foslinanib Disodium, Fosquidone, Fostriecin, Fotemustine, Fotretamine, FPV Vaccine CV301, FPV-Brachyury-TRICOM Vaccine, Fresolimumab, Fruquintinib, Fulvestrant, Fumagillin-Derived Polymer Conjugate XMT-1107, Fursultiamine, Futibatinib, Futuximab, Futuximab/Modotuximab Mixture, G Protein-coupled Estrogen Receptor Agonist LNS8801, G-Quadruplex Stabilizer BMVC, Galamustine, Galarubicin, Galectin Inhibitor GR-MD-02, Galectin-1 Inhibitor OTX008, Galeterone, Galiximab, Gallium-based Bone Resorption Inhibitor AP-002, Galocitabine, Galunisertib, Gamboge Resin Extract TSB-9-W1, Gamma-delta Tocotrienol, Gamma-Secretase Inhibitor LY3039478, Gamma-Secretase Inhibitor RO4929097, Gandotinib, Ganetespib, Ganglioside GD2, Ganglioside GM2, Ganitumab, Ganoderma lucidum Spores Powder Capsule, Garlic, Gastrin Immunotoxin, Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360, Gataparsen Sodium, Gatipotuzumab, GBM Antigens and Alloantigens Immunotherapeutic Vaccine, Gedatolisib, Gefitinib, Geldanamycin, Gelonin, Gemcitabine, Gemcitabine Elaidate, Gemcitabine Hydrochloride, Gemcitabine Hydrochloride Emulsion, Gemcitabine Prodrug LY2334737, Gemcitabine-Phosphoramidate Hydrochloride NUC-1031, Gemcitabine-Releasing Intravesical System, Gemtuzumab Ozogamicin, Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum, Genistein, Gentuximab, Geranylgeranyltransferase I Inhibitor, GI-4000 Vaccine, Giloralimab, Gilteritinib, Gilteritinib Fumarate, Gimatecan, Gimeracil, Ginsenoside Rg3 Capsule, Giredestrant, Girentuximab, Girodazole, GITR Agonist MEDI1873, Givinostat, Glasdegib, Glasdegib Maleate, Glaucarubolone, Glecaprevir/Pibrentasvir, Glembatumumab Vedotin, Glesatinib, Glioblastoma Cancer Vaccine ERC1671, Glioblastoma Multiforme Multipeptide Vaccine IMA950, Glioma Lysate Vaccine GBM6-AD, Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701, Globo H-DT Vaccine OBI-833, Glofitamab, Glucarpidase, Glucocorticoid Receptor Antagonist ORIC-101, Glufosfamide, Glumetinib, Glutaminase Inhibitor CB-839, Glutaminase Inhibitor CB-839 Hydrochloride, Glutaminase Inhibitor IPN60090, Glutamine Antagonist DRP-104, Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101, Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01, Glycooptimized Trastuzumab-GEX, GM-CSF-encoding Oncolytic Adenovirus CGTG-102, Gold Sodium Thiomalate, Golnerminogene Pradenovec, Golotimod, Golvatinib, Gonadotropin-releasing Hormone Analog, Goserelin, Goserelin Acetate, Goserelin Acetate Extended-release Microspheres LY01005, Gossypol, Gossypol Acetic Acid, Grapiprant, Green Tea Extract-based Antioxidant Supplement, GS/pan-Notch Inhibitor AL101, GS/pan-Notch Inhibitor BMS-986115, GSK-3 Inhibitor 9-ING-41, GSK-3 Inhibitor LY2090314, Guadecitabine, Guanabenz Acetate, Guselkumab, Gusperimus Trihydrochloride, Gutolactone, H-ras Antisense Oligodeoxynucleotide ISIS 2503, H1299 Tumor Cell Lysate Vaccine, HAAH Lambda phage Vaccine SNS-301, Hafnium Oxide-containing Nanoparticles NBTXR3, Halichondrin Analogue E7130, Halichondrin B, Halofuginone, Halofuginone Hydrobromide, HCV DNA Vaccine INO-8000, HDAC Class I/IIb Inhibitor HG146, HDAC Inhibitor AR-42, HDAC inhibitor CG200745, HDAC Inhibitor CHR-2845, HDAC Inhibitor CKD-581, HDAC Inhibitor CXD101, HDAC Inhibitor MPT0E028, HDAC Inhibitor OBP-801, HDAC/EGFR/HER2 Inhibitor CUDC-101, HDAC6 Inhibitor KA2507, HDAC8 Inhibitor NBM-BMX, HDM2 Inhibitor HDM201, HDM2 Inhibitor MK-8242, Hedgehog Inhibitor IPI-609, Hematoporphyrin Derivative, Hemiasterlin Analog E7974, Henatinib Maleate, Heparan Sulfate Glycosaminoglycan Mimetic M402, Heparin Derivative SST0001, HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131, HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901, HER2 Inhibitor CP-724;714, HER2 Inhibitor DZD1516, HER2 Inhibitor TAS0728, HER2 Tri-specific Natural Killer Cell Engager DF1001, HER2-directed TLR8 Agonist SBT6050, HER2-targeted DARPin MP0274, HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302, HER2-targeting Antibody Fc Fragment FS102, Herba Scutellaria Barbata, Herbimycin, Heterodimeric Interleukin-15, Hexamethylene Bisacetamide, Hexaminolevulinate, Hexylresorcinol, HIF-1alpha Inhibitor PX-478, HIF-2alpha Inhibitor PT2385, HIF-2alpha Inhibitor PT2977, HIF2a RNAi ARO-HIF2, Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126, Histrelin Acetate, HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001, HLA-A*2402-Restricted Multipeptide Vaccine S-488410, HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201, HM2/MMAE Antibody-Drug Conjugate ALT-P7, Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine, Holmium Ho 166 Poly(L-Lactic Acid) Microspheres, Hormone Therapy, HPPH, HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202, HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c, HPV DNA Plasmids Therapeutic Vaccine VGX-3100, HPV E6/E7 DNA Vaccine GX-188E, HPV E6/E7-encoding Arenavirus Vaccine HB-201, HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C, HPV-16 E6 Peptides Vaccine/Candida albicans Extract, HPV-6-targeting Immunotherapeutic Vaccine INO-3106, HPV16 E7-specific HLA-A*02:01-restricted IgG1-Fc Fusion Protein CUE-101, HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN, HPV6/11-targeted DNA Plasmid Vaccine INO-3107, Hsp90 Antagonist KW-2478, Hsp90 Inhibitor AB-010, Hsp90 Inhibitor BIIB021, Hsp90 Inhibitor BIIB028, Hsp90 Inhibitor Debio 0932, Hsp90 Inhibitor DS-2248, Hsp90 Inhibitor HSP990, Hsp90 Inhibitor MPC-3100, Hsp90 Inhibitor PU-H71, Hsp90 Inhibitor SNX-5422 Mesylate, Hsp90 Inhibitor SNX-5542 Mesylate, Hsp90 Inhibitor TQB3474, Hsp90 Inhibitor XL888, Hsp90-targeted Photosensitizer HS-201, HSP90-targeted SN-38 Conjugate PEN-866, HSP90alpha/beta Inhibitor TAS-116, hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301, hTERT Vaccine V934/V935, hTERT-encoding DNA Vaccine INVAC-1, Hu14.18-IL2 Fusion Protein EMD 273063, HuaChanSu, Huaier Extract Granule, Huang Lian, huBC1-huIL12 Fusion Protein AS1409, Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736, Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104, Human MOAB LICO 28a32, Human Monoclonal Antibody 216, Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307, Human Papillomavirus 16 E7 Peptide/Padre 965.10, Hyaluronidase-zzxf/Pertuzumab/Trastuzumab, Hycanthone, Hydralazine Hydrochloride, Hydrocortisone Sodium Succinate, Hydroxychloroquine, Hydroxyprogesterone Caproate, Hydroxytyrosol, Hydroxyurea, Hypericin, Hypoxia-activated Prodrug TH-4000, I 131 Antiferritin Immunoglobulin, I 131 Monoclonal Antibody A33, I 131 Monoclonal Antibody CC49, I 131 Monoclonal Antibody F19, I 131 Monoclonal Antibody Lym-1, Iadademstat, Ianalumab, IAP Inhibitor APG-1387, IAP Inhibitor AT-406, IAP Inhibitor HGS1029, Ibandronate Sodium, Iberdomide, Iboctadekin, Ibritumomab Tiuxetan, Ibrutinib, Icotinib Hydrochloride, Icrucumab, ICT-121 Dendritic Cell Vaccine, Idarubicin, Idarubicin Hydrochloride, Idarubicin-Eluting Beads, Idasanutlin, Idecabtagene Vicleucel, Idelalisib, Idetrexed, IDH1 Mutant Inhibitor LY3410738, IDH1(R132) Inhibitor IDH305, IDH1R132H-Specific Peptide Vaccine PEPIDH1M, Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020, IDO Peptide Vaccine IO102, IDO-1 Inhibitor LY3381916, IDO/TDO Inhibitor HTI-1090, IDO/TDO Inhibitor LY-01013, IDO1 Inhibitor KHK2455, IDO1 Inhibitor MK-7162, IDO1 Inhibitor PF-06840003, IDO1/TDO2 Inhibitor DN1406131, IDO1/TDO2 Inhibitor M4112, Idronoxil, Idronoxil Suppository NOX66, Ieramilimab, Ifabotuzumab, Ifetroban, Ifosfamide, IGF-1R Inhibitor, IGF-1R Inhibitor PL225B, IGF-1R/IR Inhibitor KW-2450, IGF-methotrexate Conjugate, IL-10 Immunomodulator MK-1966, IL-12-expressing HSV-1 NSC 733972, IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051, IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000, IL-2 Recombinant Fusion Protein ALT-801, IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1, IL4-Pseudomonas Exotoxin Fusion Protein MDNA55, Ilginatinib, Ilixadencel, Iloprost, Ilorasertib, Imalumab, Imaradenant, Imatinib, Imatinib Mesylate, Imetelstat, Imetelstat Sodium, Imexon, Imgatuzumab, Imidazole Mustard, Imidazole-Pyrazole, Imifoplatin, Imipramine Blue, Imiquimod, Immediate-release Onapristone, Immediate-release Tablet Afuresertib, Immune Checkpoint Inhibitor ASP8374, Immunoconjugate RO5479599, Immunocytokine NHS-IL12, Immunocytokine NHS-IL2-LT, Immunomodulator LAM-003, Immunomodulator OHR/AVR118, Immunomodulatory Agent CC-11006, Immunomodulatory Oligonucleotide HYB2055, Immunotherapeutic Combination Product CMB305, Immunotherapeutic GSK1572932A, Immunotherapy Regimen MKC-1106-MT, Immunotoxin CMD-193, IMT-1012 Immunotherapeutic Vaccine, Inactivated Oncolytic Virus Particle GEN0101, Inalimarev, Incyclinide, Indatuximab Ravtansine, Indibulin, Indicine-N-Oxide, Indisulam, Individualized MVA-based Vaccine TG4050, Indocyanine Green-labeled Polymeric Micelles ONM-100, Indole-3-Carbinol, Indomethacin, Indoximod, Indoximod Prodrug NLG802, Indusatumab Vedotin, Inebilizumab, Inecalcitol, Infigratinib, Infigratinib Mesylate, Infliximab, Ingenol Mebutate, Ingenol Mebutate Gel, Iniparib, iNKT Cell Agonist ABX196, Innate Immunostimulator rBBX-01, INO-1001, Inodiftagene Vixteplasmid, iNOS Dimerization Inhibitor ASP9853, Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01, Inosine Monophosphate Dehydrogenase Inhibitor AVN944, Inositol, Inotuzumab Ozogamicin, Inproquone, Integrin alpha-2 Inhibitor E7820, Integrin Receptor Antagonist GLPG0187, Interferon, Interferon Alfa-2B, Interferon Alfa-N1, Interferon Alfa-N3, Interferon Alfacon-1, Interferon Beta-1A, Interferon Gamma-1b, Interferon-gamma-expressing Adenovirus Vaccine ASN-002, Interleukin Therapy, Interleukin-12-Fc Fusion Protein DF6002, Interleukin-15 Agonist Fusion Protein SHR1501, Interleukin-15 Fusion Protein BJ-001, Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306, Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101, Interleukin-2 Liposome, Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230, Intetumumab, Intiquinatine, Intoplicine, Inulin, Iobenguane I-131, Iodine I 124 Monoclonal Antibody A33, Iodine I 124 Monoclonal Antibody M5A, Iodine I 125-Anti-EGFR-425 Monoclonal Antibody, Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP, Iodine I 131 Apamistamab, Iodine I 131 Derlotuximab Biotin, Iodine I 131 Ethiodized Oil, Iodine I 131 IPA, Iodine I 131 MIP-1095, Iodine I 131 Monoclonal Antibody 81C6, Iodine I 131 Monoclonal Antibody BC8, Iodine I 131 Monoclonal Antibody CC49-deltaCH2, Iodine I 131 Monoclonal Antibody F16SIP, Iodine I 131 Monoclonal Antibody G-250, Iodine I 131 Monoclonal Antibody muJ591, Iodine I 131 Omburtamab, Iodine I 131 Rituximab, Iodine I 131 Tenatumomab, Iodine I 131 TM-601, Iodine I 131 Tositumomab, Iodine I-131, Ioflubenzamide I-131, Ionomycin, Ipafricept, Ipatasertib, Ipilimumab, Ipomeanol, Iproplatin, iPSC-derived CD16-expressing Natural Killer Cells FT516, iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596, iPSC-derived Natural Killer Cells FT500, IRAK4 Inhibitor CA-4948, Iratumumab, Iridium Ir 192, Irinotecan, Irinotecan Hydrochloride, Irinotecan Sucrosofate, Irinotecan-Eluting Beads, Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet, Irofulven, Iroplact, Irosustat, Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130, Isatuximab, Iso-fludelone, Isobrucein B, Isocoumarin NM-3, Isotretinoin, Ispinesib, Ispinesib Mesylate, ISS 1018 CpG Oligodeoxynucleotide, Istiratumab, Itacitinib, Itacitinib Adipate, ITK Inhibitor CPI-818, Itraconazole, Itraconazole Dispersion In Polymer Matrix, Ivaltinostat, Ivosidenib, Ivuxolimab, Ixabepilone, Ixazomib, Ixazomib Citrate, JAK Inhibitor, JAK Inhibitor INCB047986, JAK1 Inhibitor AZD4205, JAK1 Inhibitor INCB052793, JAK2 Inhibitor AZD1480, JAK2 Inhibitor BMS-911543, JAK2 Inhibitor XL019, JAK2/Src Inhibitor NS-018, Jin Fu Kang, JNK Inhibitor CC-401, Kanglaite, Kanitinib, Ketoconazole, Ketotrexate, KRAS G12C Inhibitor GDC-6036, KRAS G12C Inhibitor LY3499446, KRAS G12C Inhibitor MRTX849, KRAS Mutant-targeting AMG 510, KRAS-MAPK Signaling Pathway Inhibitor JAB-3312, KRASG12C Inhibitor JNJ-74699157, KRN5500, KSP Inhibitor AZD4877, KSP Inhibitor SB-743921, Kunecatechins Ointment, L-Gossypol, L-methylfolate, Labetuzumab Govitecan, Lactoferrin-derived Lytic Peptide LTX-315, Lacutamab, Ladiratuzumab Vedotin, Ladirubicin, Laetrile, LAIR-2 Fusion Protein NC410, Landogrozumab, Laniquidar, Lanreotide Acetate, Lapachone, Lapatinib, Lapatinib Ditosylate, Laprituximab Emtansine, Lapuleucel-T, Laromustine, Larotaxel, Larotinib Mesylate, Larotrectinib, Larotrectinib Sulfate, Lavendustin A, Lazertinib, Lead Pb 212 TCMC-trastuzumab, Lefitolimod, Leflunomide, Lenalidomide, Lenalidomide Analog KPG-121, Lentinan, Lenvatinib, Lenvatinib Mesylate, Lenzilumab, Lerociclib, Lestaurtinib, Letetresgene Autoleucel, Letolizumab, Letrozole, Leucovorin, Leucovorin Calcium, Leuprolide, Leuprolide Acetate, Leuprolide Mesylate Injectable Suspension, Leurubicin, Levetiracetam, Levoleucovorin Calcium, Levothyroxine, Levothyroxine Sodium, Lexatumumab, Lexibulin, Liarozole, Liarozole Fumarate, Liarozole Hydrochloride, Licartin, Licorice, Lifastuzumab Vedotin, Lifileucel, Lifirafenib, Light-activated AU-011, Light-Emitting Oncolytic Vaccinia Virus GL-ONC1, Lilotomab, Limonene; (+)-, Limonene; (+/-)-, Linifanib, Linoleyl Carbonate-Paclitaxel, Linperlisib, Linrodostat, Linsitinib, Lintuzumab, Liothyronine I-131, Liothyronine Sodium, Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1, Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191, Lipid Nanoparticle Encapsulated OX40L mRNA-2416, Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006, Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752, Liposomal Bcl-2 Antisense Oligonucleotide BP1002, Liposomal c-raf Antisense Oligonucleotide, Liposomal Curcumin, Liposomal Cytarabine, Liposomal Daunorubicin Citrate, Liposomal Docetaxel, Liposomal Eribulin Mesylate, Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101, Liposomal Irinotecan, Liposomal Mitoxantrone Hydrochloride, Liposomal MUC1/PET-lipid A Vaccine ONT-10, Liposomal NDDP, Liposomal Rhenium Re 186, Liposomal SN-38, Liposomal Topotecan FF-10850, Liposomal Vinorelbine, Liposomal Vinorelbine Tartrate, Liposome, Liposome-encapsulated Daunorubicin-Cytarabine, Liposome-Encapsulated Doxorubicin Citrate, Liposome-encapsulated miR-34 Mimic MRX34, Liposome-encapsulated OSI-7904, Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94, Liposome-encapsulated TAAs mRNA Vaccine W_ova1, Lirilumab, Lisavanbulin, Lisocabtagene Maraleucel, Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142, Litronesib, Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809, Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207, Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623, Liver X Receptor beta Agonist RGX-104, Lm-tLLO-neoantigens Vaccine ADXS-NEO, LMB-1 Immunotoxin, LMB-2 Immunotoxin, LMB-7 Immunotoxin, LMB-9 Immunotoxin, LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164, LMP-2:340-349 Peptide Vaccine, LMP-2:419-427 Peptide Vaccine, LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes, LMP7 Inhibitor M3258, Lobaplatin, Lodapolimab, Lometrexol, Lometrexol Sodium, Lomustine, Lonafarnib, Loncastuximab Tesirine, Long Peptide Vaccine 7, Long-acting Release Pasireotide, Lontucirev, Lorlatinib, Lorukafusp alfa, Lorvotuzumab Mertansine, Losatuxizumab Vedotin, Losoxantrone, Losoxantrone Hydrochloride, Lovastatin, LOXL2 Inhibitor PAT-1251, LRP5 Antagonist BI 905681, LRP5/6 Antagonist BI 905677, LSD1 Inhibitor CC-90011, LSD1 Inhibitor GSK2879552, LSD1 Inhibitor IMG-7289, LSD1 Inhibitor RO7051790, LSD1 Inhibitor SYHA1807, Lucanthone, Lucatumumab, Lucitanib, Luminespib, Luminespib Mesylate, Lumretuzumab, Lung-targeted Immunomodulator QBKPN, Lupartumab Amadotin, Lurbinectedin, Lurtotecan, Lurtotecan Liposome, Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1, Lutetium Lu 177 DOTA-biotin, Lutetium Lu 177 DOTA-N3-CTT1403, Lutetium Lu 177 DOTA-Tetulomab, Lutetium Lu 177 Dotatate, Lutetium Lu 177 Lilotomab-satetraxetan, Lutetium Lu 177 Monoclonal Antibody CC49, Lutetium Lu 177 Monoclonal Antibody J591, Lutetium Lu 177 PP-F11N, Lutetium Lu 177 Satoreotide Tetraxetan, Lutetium Lu 177-DOTA-EB-TATE, Lutetium Lu 177-DTPA-omburtamab, Lutetium Lu 177-Edotreotide, Lutetium Lu 177-NeoB, Lutetium Lu 177-PSMA-617, Lutetium Lu-177 Capromab, Lutetium Lu-177 Girentuximab, Lutetium Lu-177 PSMA-R2, Lutetium Lu-177 Rituximab, LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1, Lyophilized Black Raspberry Lozenge, Lyophilized Black Raspberry Saliva Substitute, Lysine-specific Demethylase 1 Inhibitor INCB059872, Lyso-Thermosensitive Liposome Doxorubicin, Maackia amurensis Seed Lectin, Macimorelin, Macitentan, Macrocycle-bridged STING Agonist E7766, Maekmoondong-tang, Mafosfamide, MAGE-10.A2, MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells, MAGE-A3 Multipeptide Vaccine GL-0817, MAGE-A3 Peptide Vaccine, MAGE-A3-specific Immunotherapeutic GSK 2132231A, MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201, Magnesium Valproate, Magrolimab, MALT1 Inhibitor JNJ-67856633, Manelimab, Mannosulfan, Mannosylerythritol Lipid, Mapatumumab, Maraba Oncolytic Virus Expressing Mutant HPV E6/E7, Marcellomycin, MARCKS Protein Inhibitor BIO-11006, Margetuximab, Marimastat, Marizomib, Masitinib Mesylate, Masoprocol, MAT2A Inhibitor AG-270, Matrix Metalloproteinase Inhibitor MMI270, Matuzumab, Mavelertinib, Mavorixafor, Maytansine, MCL-1 Inhibitor ABBV-467, MCL-1 Inhibitor AMG 176, MCL-1 inhibitor AMG 397, Mcl-1 Inhibitor AZD5991, Mcl-1 Inhibitor MIK665, MDM2 Antagonist ASTX295, MDM2 Antagonist RO5045337, MDM2 Antagonist RO6839921, MDM2 Inhibitor AMG-232, MDM2 Inhibitor AMGMDS3, MDM2 Inhibitor BI 907828, MDM2 Inhibitor KRT-232, MDM2/MDMX Inhibitor ALRN-6924, MDR Modulator CBT-1, Mechlorethamine, Mechlorethamine Hydrochloride, Mechlorethamine Hydrochloride Gel, Medorubicin, Medroxyprogesterone, Medroxyprogesterone Acetate, Megestrol Acetate, MEK 1/2 Inhibitor AS703988/MSC2015103B, MEK 1/2 Inhibitor FCN-159, MEK Inhibitor AZD8330, MEK Inhibitor CI-1040, MEK inhibitor CS3006, MEK Inhibitor GDC-0623, MEK Inhibitor HL-085, MEK Inhibitor PD0325901, MEK Inhibitor RO4987655, MEK Inhibitor SHR 7390, MEK Inhibitor TAK-733, MEK Inhibitor WX-554, MEK-1/MEKK-1 Inhibitor E6201, MEK/Aurora Kinase Inhibitor BI 847325, Melanoma Monoclonal Antibody hIgG2A, Melanoma TRP2 CTL Epitope Vaccine SCIB1, Melapuldencel-T, MELK Inhibitor OTS167, Melphalan, Melphalan Flufenamide, Melphalan Hydrochloride, Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex, Membrane-Disrupting Peptide EP-100, Menatetrenone, Menin-MLL Interaction Inhibitor SNDX-5613, Menogaril, Merbarone, Mercaptopurine, Mercaptopurine Anhydrous, Mercaptopurine Oral Suspension, Merestinib, Mesna, Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536, MET Kinase Inhibitor OMO-1, MET Tyrosine Kinase Inhibitor BMS-777607, MET Tyrosine Kinase Inhibitor EMD 1204831, MET Tyrosine Kinase Inhibitor PF-04217903, MET Tyrosine Kinase Inhibitor SAR125844, MET Tyrosine Kinase Inhibitor SGX523, MET x MET Bispecific Antibody REGN5093, Metamelfalan, MetAP2 Inhibitor APL-1202, MetAP2 Inhibitor SDX-7320, Metarrestin, Metatinib Tromethamine, Metformin, Metformin Hydrochloride, Methanol Extraction Residue of BCG, Methazolamide, Methionine Aminopeptidase 2 Inhibitor M8891, Methionine Aminopeptidase 2 Inhibitor PPI-2458, Methotrexate, Methotrexate Sodium, Methotrexate-E Therapeutic Implant, Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles, Methoxsalen, Methoxyamine, Methoxyamine Hydrochloride, Methyl-5-Aminolevulinate Hydrochloride Cream, Methylcantharidimide, Methylmercaptopurine Riboside, Methylprednisolone, Methylprednisolone Acetate, Methylprednisolone Sodium Succinate, Methylselenocysteine, Methyltestosterone, Metoprine, Mevociclib, Mezagitamab, Mibefradil, Mibefradil Dihydrochloride, Micellar Nanoparticle-encapsulated Epirubicin, Micro Needle Array-Doxorubicin, Microbiome GEN-001, Microbiome-derived Peptide Vaccine EO2401, Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300, Microtubule Inhibitor SCB01A, Midostaurin, Mifamurtide, Mifepristone, Milademetan Tosylate, Milataxel, Milatuzumab, Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110, Milciclib Maleate, Milk Thistle, Miltefosine, Minretumomab, Mipsagargin, Miptenalimab, Mirabegron, Miransertib, Mirdametinib, Mirvetuximab Soravtansine, Mirzotamab Clezutoclax, Misonidazole, Mistletoe Extract, Mitazalimab, Mitindomide, Mitobronitol, Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101, Mitoclomine, Mitoflaxone, Mitoguazone, Mitoguazone Dihydrochloride, Mitolactol, Mitomycin, Mitomycin A, Mitomycin B, Mitomycin C Analog KW-2149, Mitosis Inhibitor T 1101 Tosylate, Mitotane, Mitotenamine, Mitoxantrone, Mitoxantrone Hydrochloride, Mitozolomide, Mivavotinib, Mivebresib, Mivobulin, Mivobulin Isethionate, Mixed Bacteria Vaccine, MK0731, MKC-1, MKNK1 Inhibitor BAY 1143269, MMP Inhibitor S-3304, MNK1/2 Inhibitor ETC-1907206, Mobocertinib, Mocetinostat, Modakafusp Alfa, Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208, Modified Vitamin D Binding Protein Macrophage Activator EF-022, Modotuximab, MOF Compound RiMO-301, Mofarotene, Mogamulizumab, Molibresib, Molibresib Besylate, Momelotinib, Monalizumab, Monocarboxylate Transporter 1 Inhibitor AZD3965, Monoclonal Antibody 105AD7 Anti-idiotype Vaccine, Monoclonal Antibody 11D10, Monoclonal Antibody 11D10 Anti-Idiotype Vaccine, Monoclonal Antibody 14G2A, Monoclonal Antibody 1F5, Monoclonal Antibody 3622W94, Monoclonal Antibody 3F8, Monoclonal Antibody 3H1 Anti-Idiotype Vaccine, Monoclonal Antibody 4B5 Anti-Idiotype Vaccine, Monoclonal Antibody 7C11, Monoclonal Antibody 81C6, Monoclonal Antibody A1G4 Anti-Idiotype Vaccine, Monoclonal Antibody A27.15, Monoclonal Antibody A33, Monoclonal Antibody AbGn-7, Monoclonal Antibody AK002, Monoclonal Antibody ASP1948, Monoclonal Antibody CAL, Monoclonal Antibody CC49-delta CH2, Monoclonal Antibody CEP-37250/KHK2804, Monoclonal Antibody D6.12, Monoclonal Antibody E2.3, Monoclonal Antibody F19, Monoclonal Antibody GD2 Anti-Idiotype Vaccine, Monoclonal Antibody HeFi-1, Monoclonal Antibody Hu3S193, Monoclonal Antibody HuAFP31, Monoclonal Antibody HuHMFG1, Monoclonal Antibody huJ591, Monoclonal Antibody HuPAM4, Monoclonal Antibody IMMU-14, Monoclonal Antibody L6, Monoclonal Antibody Lym-1, Monoclonal Antibody m170, Monoclonal Antibody Me1-14 F(ab')2, Monoclonal Antibody muJ591, Monoclonal Antibody MX35 F(ab')2, Monoclonal Antibody NEO-201, Monoclonal Antibody R24, Monoclonal Antibody RAV12, Monoclonal Antibody SGN-14, Monoclonal Antibody TRK-950, Monoclonal Microbial EDP1503, Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100, Monomethyl Auristatin E, Morinda Citrifolia Fruit Extract, Morpholinodoxorubicin, Mosedipimod, Mosunetuzumab, Motesanib, Motesanib Diphosphate, Motexafin Gadolinium, Motexafin Lutetium, Motixafortide, Motolimod, MOv-gamma Chimeric Receptor Gene, Moxetumomab Pasudotox, Mps1 Inhibitor BAY 1217389, Mps1 Inhibitor BOS172722, mRNA-based Personalized Cancer Vaccine mRNA-4157, mRNA-based Personalized Cancer Vaccine NCI-4650, mRNA-based TriMix Melanoma Vaccine ECI-006, mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902, mRNA-derived KRAS-targeted Vaccine V941, mRNA-derived Lung Cancer Vaccine BI 1361849, mRNA-Derived Prostate Cancer Vaccine CV9103, mRNA-derived Prostate Cancer Vaccine CV9104, MTF-1 Inhibitor APTO-253 HCl, mTOR Inhibitor GDC-0349, mTOR Kinase Inhibitor AZD8055, mTOR Kinase Inhibitor CC-223, mTOR Kinase Inhibitor OSI-027, mTOR Kinase Inhibitor PP242, mTOR1/2 Kinase Inhibitor ME-344, mTORC 1/2 Inhibitor LXI-15029, mTORC1/2 Kinase Inhibitor BI 860585, mTORC1/mTORC2/DHFR Inhibitor ABTL0812, MUC-1/WT1 Peptide-primed Autologous Dendritic Cells, MUC1-targeted Peptide GO-203-2C, Mucoadhesive Paclitaxel Formulation, Multi-AGC Kinase Inhibitor AT13148, Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200, Multi-epitope HER2 Peptide Vaccine H2NVAC, Multi-epitope HER2 Peptide Vaccine TPIV100, Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107, Multi-kinase Inhibitor TPX-0022, Multi-kinase Inhibitor XL092, Multi-mode Kinase Inhibitor EOC317, Multi-neo-epitope Vaccine OSE 2101, Multifunctional/Multitargeted Anticancer Agent OMN54, Multikinase Inhibitor 4SC-203, Multikinase Inhibitor AEE788, Multikinase Inhibitor AT9283, Multikinase Inhibitor SAR103168, Multipeptide Vaccine S-588210, Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327, Muparfostat, Mureletecan, Murizatoclax, Muscadine Grape Extract, Mutant IDH1 Inhibitor DS-1001, Mutant p53 Activator COTI-2, Mutant-selective EGFR Inhibitor PF-06459988, MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP, MVA-BN Smallpox Vaccine, MVA-FCU1 TG4023, MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1, MYC-targeting siRNA DCR-MYC, Mycobacterium tuberculosis Arabinomannan Z-100, Mycobacterium w, Mycophenolic Acid, N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea, N-dihydrogalactochitosan, N-Methylformamide, N;N-Dibenzyl Daunomycin, NA17-A Antigen, NA17.A2 Peptide Vaccine, Nab-paclitaxel, Nab-paclitaxel/Rituximab-coated Nanoparticle AR160, Nadofaragene Firadenovec, Nagrestipen, Namirotene, Namodenoson, NAMPT Inhibitor OT-82, Nanafrocin, Nanatinostat, Nanocell-encapsulated miR-16-based microRNA Mimic, Nanoparticle Albumin-Bound Docetaxel, Nanoparticle Albumin-Bound Rapamycin, Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404, Nanoparticle Paclitaxel Ointment SOR007, Nanoparticle-based Paclitaxel Suspension, Nanoparticle-encapsulated Doxorubicin Hydrochloride, Nanoscale Coordination Polymer Nanoparticles CPI-100, Nanosomal Docetaxel Lipid Suspension, Napabucasin, Naphthalimide Analogue UNBS5162, Naptumomab Estafenatox, Naquotinib, Naratuximab Emtansine, Narnatumab, Natalizumab, Natural IFN-alpha OPC-18, Natural Killer Cells ZRx101, Navarixin, Navicixizumab, Navitoclax, Navoximod, Navy Bean Powder, Naxitamab, Nazartinib, ncmtRNA Oligonucleotide Andes-1537, Necitumumab, Nedaplatin, NEDD8 Activating Enzyme E1 Inhibitor TAS4464, Nedisertib, Nelarabine, Nelipepimut-S, Nelipepimut-S Plus GM-CSF Vaccine, Nemorubicin, Nemorubicin Hydrochloride, Neoantigen Vaccine GEN-009, Neoantigen-based Glioblastoma Vaccine, Neoantigen-based Melanoma-Poly-ICLC Vaccine, Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine, Neoantigen-based Therapeutic Cancer Vaccine GRT-C903, Neoantigen-based Therapeutic Cancer Vaccine GRT-R904, Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017, Neratinib, Neratinib Maleate, Nesvacumab, NG-nitro-L-arginine, Niacinamide, Niclosamide, Nicotinamide Riboside, Nidanilimab, Nifurtimox, Nilotinib, Nilotinib Hydrochloride Anhydrous, Nilotinib Hydrochloride Monohydrate, Nilutamide, Nimesulide-Hyaluronic Acid Conjugate CA102N, Nimodipine, Nimotuzumab, Nimustine, Nimustine Hydrochloride, Ningetinib Tosylate, Nintedanib, Niraparib, Niraparib Tosylate Monohydrate, Nirogacestat, Nitric Oxide-Releasing Acetylsalicylic Acid Derivative, Nitrogen Mustard Prodrug PR-104, Nitroglycerin Transdermal Patch, Nivolumab, NLRP3 Agonist BMS-986299, Nocodazole, Nogalamycin, Nogapendekin Alfa, Nolatrexed Dihydrochloride, Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201, Norgestrel, North American Ginseng Extract AFX-2, Nortopixantrone, Noscapine, Noscapine Hydrochloride, Not Otherwise Specified, Notch Signaling Inhibitor PF-06650808, Notch Signaling Pathway Inhibitor MK0752, NTRK/ROS1 Inhibitor DS-6051b, Nucleolin Antagonist IPP-204106N, Nucleoside Analog DFP-10917, Nucleotide Analog Prodrug NUC-3373, Nucleotide Analogue GS 9219, Numidargistat, Nurulimab, Nutlin-3a, Nutraceutical TBL-12, NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611, NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301, NY-ESO-1/GLA-SE Vaccine ID-G305, NY-ESO-B, O-Chloroacetylcarbamoylfumagillol, O6-Benzylguanine, Obatoclax Mesylate, Obinutuzumab, Oblimersen Sodium, Ocaratuzumab, Ocrelizumab, Octreotide, Octreotide Acetate, Octreotide Pamoate, Odronextamab, Ofatumumab, Ofranergene Obadenovec, Oglufanide Disodium, Olaparib, Olaptesed Pegol, Olaratumab, Oleandrin, Oleclumab, Oligo-fucoidan, Oligonucleotide SPC2996, Olinvacimab, Olivomycin, Olmutinib, Oltipraz, Olutasidenib, Olvimulogene Nanivacirepvec, Omacetaxine Mepesuccinate, Ombrabulin, Omipalisib, Onalespib, Onalespib Lactate, Onartuzumab, Onatasertib, Oncolytic Adenovirus Ad5-DNX-2401, Oncolytic Adenovirus ORCA-010, Oncolytic Herpes Simplex Virus-1 ONCR-177, Oncolytic HSV-1 C134, Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011, Oncolytic HSV-1 G207, Oncolytic HSV-1 NV1020, Oncolytic HSV-1 rQNestin34.5v.2, Oncolytic HSV-1 rRp450, Oncolytic HSV1716, Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein, Oncolytic Newcastle Disease Virus MEDI5395, Oncolytic Newcastle Disease Virus MTH-68H, Oncolytic Newcastle Disease Virus Strain PV701, Oncolytic Virus ASP9801, Oncolytic Virus RP1, Ondansetron Hydrochloride, Ontorpacept, Ontuxizumab, Onvansertib, Onvatilimab, Opaganib, OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule, Opioid Growth Factor, Opolimogene Capmilisbac, Oportuzumab Monatox, Oprozomib, Opucolimab, Oral Aminolevulinic Acid Hydrochloride, Oral Azacitidine, Oral Cancer Vaccine V3-OVA, Oral Docetaxel, Oral Fludarabine Phosphate, Oral Hsp90 Inhibitor IPI-493, Oral Ixabepilone, Oral Microencapsulated Diindolylmethane, Oral Milataxel, Oral Myoma Vaccine V3-myoma, Oral Pancreatic Cancer Vaccine V3-P, Oral Picoplatin, Oral Sodium Phenylbutyrate, Oral Topotecan Hydrochloride, Orantinib, Oraxol, Oregovomab, Orelabrutinib, Ormaplatin, Ortataxel, Orteronel, Orvacabtagene Autoleucel, Osilodrostat, Osimertinib, Other, Otlertuzumab, Ovapuldencel-T, Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006, Ovine Submaxillary Mucin, OX40L-expressing Oncolytic Adenovirus DNX-2440, Oxaliplatin, Oxaliplatin Eluting Beads, Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome, Oxcarbazepine, Oxeclosporin, Oxidative Phosphorylation Inhibitor IACS-010759, Oxidative Phosphorylation Inhibitor IM156, Oxidopamine, OxPhos Inhibitor VLX600, Ozarelix, P-cadherin Antagonist PF-03732010, P-cadherin Inhibitor PCA062, P-cadherin-targeting Agent PF-06671008, P-p68 Inhibitor RX-5902, P-TEFb Inhibitor BAY1143572, p300/CBP Bromodomain Inhibitor CCS1477, p38 MAPK Inhibitor LY3007113, p53 Peptide Vaccine MPS-128, p53-HDM2 Interaction Inhibitor MI-773, p53-HDM2 Protein-protein Interaction Inhibitor APG-115, p53/HDM2 Interaction Inhibitor CGM097, p70S6K Inhibitor LY2584702, p70S6K/Akt Inhibitor MSC2363318A, p97 Inhibitor CB-5083, p97 Inhibitor CB-5339, p97 Inhibitor CB-5339 Tosylate, Paclitaxel, Paclitaxel Ceribate, Paclitaxel Injection Concentrate for Nanodispersion, Paclitaxel Liposome, Paclitaxel Poliglumex, Paclitaxel Polymeric Micelle Formulation NANT-008, Paclitaxel PPE Microspheres, Paclitaxel Trevatide, Paclitaxel Vitamin E-Based Emulsion, Paclitaxel-Loaded Polymeric Micelle, Pacmilimab, Pacritinib, Padeliporfin, Padoporfin, PAK4 Inhibitor PF-03758309, PAK4/NAMPT Inhibitor KPT-9274, Palbociclib, Palbociclib Isethionate, Palifosfamide, Palifosfamide Tromethamine, Palladium Pd-103, Palonosetron Hydrochloride, Pamidronate Disodium, Pamidronic Acid, Pamiparib, Pamrevlumab, pan FGFR Inhibitor PRN1371, Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514, Pan-AKT Inhibitor ARQ751, Pan-AKT Kinase Inhibitor GSK690693, Pan-FGFR Inhibitor LY2874455, Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806, pan-HER Kinase Inhibitor AC480, Pan-IDH Mutant Inhibitor AG-881, Pan-KRAS Inhibitor BI 1701963, Pan-Mutant-IDH1 Inhibitor Bay-1436032, Pan-mutation-selective EGFR Inhibitor CLN-081, pan-PI3K Inhibitor CLR457, pan-PI3K/mTOR Inhibitor SF1126, Pan-PIM Inhibitor INCB053914, pan-PIM Kinase Inhibitor AZD1208, pan-PIM Kinase Inhibitor NVP-LGB-321, pan-RAF Inhibitor LXH254, Pan-RAF Inhibitor LY3009120, pan-RAF Kinase Inhibitor CCT3833, pan-RAF Kinase Inhibitor TAK-580, Pan-RAR Agonist/AP-1 Inhibitor LGD 1550, Pan-TRK Inhibitor NOV1601, Pan-TRK Inhibitor ONO-7579, Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981, Pancratistatin, Panitumumab, Panobinostat, Panobinostat Nanoparticle Formulation MTX110, Panulisib, Paricalcitol, PARP 1/2 Inhibitor IMP4297, PARP 1/2 Inhibitor NOV1401, PARP Inhibitor AZD2461, PARP Inhibitor CEP-9722, PARP Inhibitor E7016, PARP Inhibitor NMS-03305293, PARP-1/2 Inhibitor ABT-767, PARP/Tankyrase Inhibitor 2X-121, PARP7 Inhibitor RBN-2397, Parsaclisib, Parsaclisib Hydrochloride, Parsatuzumab, Partially Engineered T-regulatory Cell Donor Graft TRGFT-201, Parvovirus H-1, Pasireotide, Pasotuxizumab, Patidegib, Patidegib Topical Gel, Patritumab, Patritumab Deruxtecan, Patupilone, Paxalisib, Pazopanib, Pazopanib Hydrochloride, pbi-shRNA STMN1 Lipoplex, PBN Derivative OKN-007, PCNU, PD-1 Directed Probody CX-188, PD-1 Inhibitor, PD-L1 Inhibitor GS-4224, PD-L1 Inhibitor INCB086550, PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480, PD-L1/PD-L2/VISTA Antagonist CA-170, PDK1 Inhibitor AR-12, pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0, PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1, PEG-interleukin-2, PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1, PEG-Proline-Interferon Alfa-2b, Pegargiminase, Pegaspargase, Pegdinetanib, Pegfilgrastim, Pegilodecakin, Peginterferon Alfa-2a, Peginterferon Alfa-2b, Pegvisomant, Pegvorhyaluronidase Alfa, Pegylated Deoxycytidine Analogue DFP-14927, Pegylated Interferon Alfa, Pegylated Liposomal Belotecan, Pegylated Liposomal Doxorubicin Hydrochloride, Pegylated Liposomal Irinotecan, Pegylated Liposomal Mitomycin C Lipid-based Prodrug, Pegylated Liposomal Mitoxantrone Hydrochloride, Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010, Pegylated Paclitaxel, Pegylated Recombinant Human Arginase I BCT-100, Pegylated Recombinant Human Hyaluronidase PH20, Pegylated Recombinant Interleukin-2 THOR-707, Pegylated Recombinant L-asparaginase Erwinia chrysanthemi, Pegylated SN-38 Conjugate PLX038, Pegzilarginase, Pelabresib, Pelareorep, Peldesine, Pelitinib, Pelitrexol, Pembrolizumab, Pemetrexed, Pemetrexed Disodium, Pemigatinib, Pemlimogene Merolisbac, Penberol, Penclomedine, Penicillamine, Pentamethylmelamine, Pentamustine, Pentostatin, Pentoxifylline, PEOX-based Polymer Encapsulated Paclitaxel FID-007, PEP-3-KLH Conjugate Vaccine, Pepinemab, Peplomycin, Peplomycin Sulfate, Peposertib, Peptichemio, Peptide 946 Melanoma Vaccine, Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine, Peretinoin, Perflenapent Emulsion, Perfosfamide, Perifosine, Perillyl Alcohol, Personalized ALL-specific Multi-HLA-binding Peptide Vaccine, Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC, Personalized Cancer Vaccine RO7198457, Personalized Neoantigen DNA Vaccine GNOS-PV01, Personalized Neoantigen DNA Vaccine GNOS-PVO2, Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01, Personalized Neoepitope Yeast Vaccine YE-NEO-001, Personalized Peptide Cancer Vaccine NEO-PV-01, Pertuzumab, Pevonedistat, Pexastimogene Devacirepvec, Pexidartinib, Pexmetinib, PGG Beta-Glucan, PGLA/PEG Copolymer-Based Paclitaxel, PH20 Hyaluronidase-expressing Adenovirus VCN-01, Phaleria macrocarpa Extract DLBS-1425, Pharmacological Ascorbate, Phellodendron amurense Bark Extract, Phenesterin, Phenethyl Isothiocyanate, Phenethyl Isothiocyanate-containing Watercress Juice, Phenyl Acetate, Phenytoin Sodium, Phosphaplatin PT-112, Phosphatidylcholine-Bound Silybin, Phospholipid Ether-drug Conjugate CLR 131, Phosphoramide Mustard, Phosphorodiamidate Morpholino Oligomer AVI-4126, Phosphorus P-32, Photodynamic Compound TLD-1433, Photosensitizer LUZ 11, Phytochlorin Sodium-Polyvinylpyrrolidone Complex, PI3K Alpha/Beta Inhibitor BAY1082439, PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate, PI3K Inhibitor ACP-319, PI3K Inhibitor BGT226, PI3K Inhibitor GDC-0084, PI3K Inhibitor GDC0077, PI3K Inhibitor GSK1059615, PI3K Inhibitor WX-037, PI3K Inhibitor ZSTK474, PI3K p110beta/delta Inhibitor KA2237, PI3K-alpha Inhibitor MEN1611, PI3K-beta Inhibitor GSK2636771, PI3K-beta Inhibitor SAR260301, PI3K-delta Inhibitor AMG 319, PI3K-delta Inhibitor HMPL 689, PI3K-delta Inhibitor INCB050465, PI3K-delta Inhibitor PWT143, PI3K-delta Inhibitor SHC014748M, PI3K-delta Inhibitor YY-20394, PI3K-gamma Inhibitor IPI-549, PI3K/BET Inhibitor LY294002, PI3K/mTOR Kinase Inhibitor DS-7423, PI3K/mTOR Kinase Inhibitor PF-04691502, PI3K/mTOR Kinase Inhibitor VS-5584, PI3K/mTOR Kinase Inhibitor WXFL10030390, PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170, PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901, PI3Ka/mTOR Inhibitor PKI-179, PI3Kalpha Inhibitor AZD8835, PI3Kbeta Inhibitor AZD8186, PI3Kdelta Inhibitor GS-9901, Pibenzimol, Pibrozelesin, Pibrozelesin Hydrobromide, Picibanil, Picoplatin, Picrasinoside H, Picropodophyllin, Pictilisib, Pictilisib Bismesylate, Pidilizumab, Pilaralisib, PIM Kinase Inhibitor LGH447, PIM Kinase Inhibitor SGI-1776, PIM Kinase Inhibitor TP-3654, PIM/FLT3 Kinase Inhibitor SEL24, Pimasertib, Pimitespib, Pimurutamab, Pinatuzumab Vedotin, Pingyangmycin, Pinometostat, Pioglitazone, Pioglitazone Hydrochloride, Pipendoxifene, Piperazinedione, Piperine Extract (Standardized), Pipobroman, Piposulfan, Pirarubicin, Pirarubicin Hydrochloride, Pirfenidone, Piritrexim, Piritrexim Isethionate, Pirotinib, Piroxantrone, Piroxantrone Hydrochloride, Pixantrone, Pixantrone Dimaleate, Pixatimod, PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231, PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521, PKC-beta Inhibitor MS-553, Placebo, Pladienolide Derivative E7107, Plamotamab, Plasmid DNA Vaccine pING-hHER3FL, Platinum, Platinum Acetylacetonate-Titanium Dioxide Nanoparticles, Platinum Compound, Plevitrexed, Plicamycin, Plinabulin, Plitidepsin, Plk1 Inhibitor BI 2536, PLK1 Inhibitor CYC140, PLK1 Inhibitor TAK-960, Plocabulin, Plozalizumab, pNGVL4a-CRT-E6E7L2 DNA Vaccine, pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2, Pol I Inhibitor CX5461, Polatuzumab Vedotin, Polidocanol, Poliglusam, Polo-like Kinase 1 Inhibitor GSK461364, Polo-like Kinase 1 Inhibitor MK1496, Polo-like Kinase 1 Inhibitor NMS-1286937, Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate, Poly-alendronate Dextran-Guanidine Conjugate, Poly-gamma Glutamic Acid, Polyamine Analog SL11093, Polyamine Analogue PG11047, Polyamine Analogue SBP-101, Polyamine Transport Inhibitor AMXT-1501 Dicaprate, Polyandrol, Polyethylene Glycol Recombinant Endostatin, Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318, Polymer-conjugated IL-15 Receptor Agonist NKTR-255, Polymer-encapsulated Luteolin Nanoparticle, Polymeric Camptothecin Prodrug XMT-1001, Polypodium leucotomos Extract, Polysaccharide-K, Polysialic Acid, Polyunsaturated Fatty Acid, Polyvalent Melanoma Vaccine, Pomalidomide, Pomegranate Juice, Pomegranate Liquid Extract, Ponatinib, Ponatinib Hydrochloride, Porcupine Inhibitor CGX1321, Porcupine Inhibitor ETC-1922159, Porcupine Inhibitor RXC004, Porcupine Inhibitor WNT974, Porcupine Inhibitor XNW7201, Porfimer Sodium, Porfiromycin, Poziotinib, PPAR Alpha Antagonist TPST-1120, PR1 Leukemia Peptide Vaccine, Pracinostat, Pralatrexate, Pralsetinib, Praluzatamab Ravtansine, PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701, Pravastatin Sodium, Prednimustine, Prednisolone, Prednisolone Acetate, Prednisolone Sodium Phosphate, Prednisone, Prexasertib, Prexigebersen, PRIMA-1 Analog APR-246, Prime Cancer Vaccine MVA-BN-CV301, Prinomastat, PRMT1 Inhibitor GSK3368715, PRMT5 Inhibitor JNJ-64619178, PRMT5 Inhibitor PRT811, Proapoptotic Sulindac Analog CP-461, Procarbazine, Procarbazine Hydrochloride, Procaspase Activating Compound-1 VO-100, Progestational IUD, Prohibitin-Targeting Peptide 1, Prolgolimab, Prostaglandin E2 EP4 Receptor Inhibitor AN0025, Prostaglandin E2 EP4 Receptor Inhibitor E7046, Prostate Cancer Vaccine ONY-P1, Prostate Health Cocktail Dietary Supplement, Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024, Protease-activated Anti-PD-L1 Antibody Prodrug CX-072, Protein Arginine Methyltransferase 5 Inhibitor GSK3326595, Protein Arginine Methyltransferase 5 Inhibitor PF-06939999, Protein Arginine Methyltransferase 5 Inhibitor PRT543, Protein Kinase C Inhibitor IDE196, Protein Phosphatase 2A Inhibitor LB-100, Protein Stabilized Liposomal Docetaxel Nanoparticles, Protein Tyrosine Kinase 2 Inhibitor IN10018, Proxalutamide, PSA/IL-2/GM-CSF Vaccine, PSA/PSMA DNA Plasmid INO-5150, Pseudoisocytidine, PSMA-targeted Docetaxel Nanoparticles BIND-014, PSMA-targeted Tubulysin B-containing Conjugate EC1169, PSMA/CD3 Tri-specific T-cell Activating Construct HPN424, PTEF-b/CDK9 Inhibitor BAY1251152, Pterostilbene, Pumitepa, Puquitinib, Puquitinib Mesylate, Puromycin, Puromycin Hydrochloride, PV-10, PVA Microporous Hydrospheres/Doxorubicin Hydrochloride, Pyrazinamide, Pyrazoloacridine, Pyridyl Cyanoguanidine CHS 828, Pyrotinib, Pyrotinib Dimaleate, Pyroxamide, Pyruvate Kinase Inhibitor TLN-232, Pyruvate Kinase M2 Isoform Activator TP-1454, Qilisheng Immunoregulatory Oral Solution, Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine, Quarfloxin, Quinacrine Hydrochloride, Quinine, Quisinostat, Quizartinib, R-(-)-Gossypol Acetic Acid, Rabusertib, Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88, Racotumomab, RAD51 Inhibitor CYT-0851, Radgocitabine, Radgocitabine Hydrochloride, Radioactive Iodine, Radiolabeled CC49, Radium Ra 223 Dichloride, Radium Ra 224-labeled Calcium Carbonate Microparticles, Radix Angelicae Sinensis/Radix Astragali Herbal Supplement, Radotinib Hydrochloride, Raf Kinase Inhibitor HM95573, RAF Kinase Inhibitor L-779450, RAF Kinase Inhibitor XL281, Ragifilimab, Ralaniten Acetate, Ralimetinib Mesylate, Raloxifene, Raloxifene Hydrochloride, Raltitrexed, Ramucirumab, Ranibizumab, Ranimustine, Ranolazine, Ranpirnase, RARalpha Agonist IRX5183, Ras Inhibitor, Ras Peptide ASP, Ras Peptide CYS, Ras Peptide VAL, Razoxane, Realgar-Indigo naturalis Formulation, Rebastinib Tosylate, Rebeccamycin, Rebimastat, Receptor Tyrosine Kinase Inhibitor R1530, Recombinant Adenovirus-p53 SCH-58500, Recombinant Anti-WT1 Immunotherapeutic GSK2302024A, Recombinant Bacterial Minicells VAX014, Recombinant Bispecific Single-Chain Antibody rM28, Recombinant CD40-Ligand, Recombinant Erwinia asparaginase JZP-458, Recombinant Erythropoietin, Recombinant Fas Ligand, Recombinant Fractalkine, Recombinant Granulocyte-Macrophage Colony-Stimulating Factor, Recombinant Human 6Ckine, Recombinant Human Adenovirus Type 5 H101, Recombinant Human Angiotensin Converting Enzyme 2 APN01, Recombinant Human Apolipoprotein(a) Kringle V MG1102, Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine, Recombinant Human Endostatin, Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine, Recombinant Human Papillomavirus 11-valent Vaccine, Recombinant Human Papillomavirus Bivalent Vaccine, Recombinant Human Papillomavirus Nonavalent Vaccine, Recombinant Human Plasminogen Kringle 5 Domain ABT 828, Recombinant Human TRAIL-Trimer Fusion Protein SCB-313, Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301, Recombinant Interferon, Recombinant Interferon Alfa, Recombinant Interferon Alfa-1b, Recombinant Interferon Alfa-2a, Recombinant Interferon Alfa-2b, Recombinant Interferon Alpha 2b-like Protein, Recombinant Interferon Beta, Recombinant Interferon Gamma, Recombinant Interleukin-12, Recombinant Interleukin-13, Recombinant Interleukin-18, Recombinant Interleukin-2, Recombinant Interleukin-6, Recombinant KSA Glycoprotein CO17-1A, Recombinant Leukocyte Interleukin, Recombinant Leukoregulin, Recombinant Luteinizing Hormone, Recombinant Macrophage Colony-Stimulating Factor, Recombinant MAGE-3.1 Antigen, Recombinant MIP1-alpha Variant ECI301, Recombinant Modified Vaccinia Ankara-5T4 Vaccine, Recombinant Oncolytic Poliovirus PVS-RIPO, Recombinant Platelet Factor 4, Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A, Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207, Recombinant Super-compound Interferon, Recombinant Thyroglobulin, Recombinant Thyrotropin Alfa, Recombinant Transforming Growth Factor-Beta, Recombinant Transforming Growth Factor-Beta-2, Recombinant Tumor Necrosis Factor-Alpha, Recombinant Tyrosinase-Related Protein-2, Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter, Redaporfin, Refametinib, Regorafenib, Relacorilant, Relatlimab, Relugolix, Remetinostat, Renal Cell Carcinoma Peptides Vaccine IMA901, Reparixin, Repotrectinib, Resiquimod, Resiquimod Topical Gel, Resistant Starch, Resminostat, Resveratrol, Resveratrol Formulation SRT501, RET Inhibitor DS-5010, RET Mutation/Fusion Inhibitor BLU-667, RET/SRC Inhibitor TPX-0046, Retaspimycin, Retaspimycin Hydrochloride, Retelliptine, Retifanlimab, Retinoic Acid Agent Ro 16-9100, Retinoid 9cUAB30, Retinol, Retinyl Acetate, Retinyl Palmitate, Retrovector Encoding Mutant Anti-Cyclin G1, Revdofilimab, Rexinoid NRX 194204, Rezivertinib, RFT5-dgA Immunotoxin IMTOX25, Rhenium Re 188 BMEDA-labeled Liposomes, Rhenium Re-186 Hydroxyethylidene Diphosphonate, Rhenium Re-188 Ethiodized Oil, Rhenium Re-188 Etidronate, Rhizoxin, RhoC Peptide Vaccine RV001V, Ribociclib, Ribociclib/Letrozole, Ribonuclease QBI-139, Ribosome-Inactivating Protein CY503, Ribozyme RPI.4610, Rice Bran, Ricolinostat, Ridaforolimus, Rigosertib, Rigosertib Sodium, Rilimogene Galvacirepvec, Rilimogene Galvacirepvec/Rilimogene Glafolivec, Rilimogene Glafolivec, Rilotumumab, Rindopepimut, Ripertamab, RIPK1 Inhibitor GSK3145095, Ripretinib, Risperidone Formulation in Rumenic Acid, Ritrosulfan, Rituximab, Rituximab and Hyaluronidase Human, Rituximab Conjugate CON-4619, Riviciclib, Rivoceranib, Rivoceranib Mesylate, RNR Inhibitor COH29, Robatumumab, Roblitinib, ROBO1-targeted BiCAR-NKT Cells, Rocakinogene Sifuplasmid, Rocapuldencel-T, Rociletinib, Rodorubicin, Roducitabine, Rofecoxib, Roflumilast, Rogaratinib, Rogletimide, Rolinsatamab Talirine, Romidepsin, Roneparstat, Roniciclib, Ropeginterferon Alfa-2B, Ropidoxuridine, Ropocamptide, Roquinimex, RORgamma Agonist LYC-55716, Rosabulin, Rose Bengal Solution PV-10, Rosiglitazone Maleate, Rosmantuzumab, Rosopatamab, Rosuvastatin, Rovalpituzumab Tesirine, RSK1-4 Inhibitor PMD-026, Rubitecan, Rucaparib, Rucaparib Camsylate, Rucaparib Phosphate, Ruthenium Ru-106, Ruthenium-based Small Molecule Therapeutic BOLD-100, Ruthenium-based Transferrin Targeting Agent NKP-1339, Ruxolitinib, Ruxolitinib Phosphate, Ruxotemitide, S-Adenosylmethionine, S-equol, S1P Receptor Agonist KRP203, Sabarubicin, Sabatolimab, Sacituzumab Govitecan, Sacubitril/Valsartan, Safingol, Sagopilone, Salirasib, Salmonella VNP20009, Sam68 Modulator CWP232291, Samalizumab, Samarium Sm 153-DOTMP, Samotolisib, Samrotamab Vedotin, Samuraciclib, Sapacitabine, Sapanisertib, Sapitinib, Saracatinib, Saracatinib Difumarate, SarCNU, Sardomozide, Sargramostim, Sasanlimab, Satraplatin, Savolitinib, SBIL-2, Scopoletin, SDF-1 Receptor Antagonist PTX-9908, Seclidemstat, Sedoxantrone Trihydrochloride, Selatinib Ditosilate, Selective Androgen Receptor Modulator RAD140, Selective Cytokine Inhibitory Drug CC-1088, Selective Estrogen Receptor Degrader AZD9496, Selective Estrogen Receptor Degrader AZD9833, Selective Estrogen Receptor Degrader LSZ102, Selective Estrogen Receptor Degrader LX-039, Selective Estrogen Receptor Degrader LY3484356, Selective Estrogen Receptor Degrader SRN-927, Selective Estrogen Receptor Modulator CC-8490, Selective Estrogen Receptor Modulator TAS-108, Selective Glucocorticoid Receptor Antagonist CORT125281, Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352, Seliciclib, Selicrelumab, Selinexor, Selitrectinib, Selonsertib, Selpercatinib, Selumetinib, Selumetinib Sulfate, Semaxanib, Semuloparin, Semustine, Seneca Valley Virus-001, Seocalcitol, Sepantronium Bromide, Serabelisib, Serclutamab Talirine, SERD D-0502, SERD G1T48, SERD GDC-9545, SERD SAR439859, SERD SHR9549, SERD ZN-c5, Serdemetan, Sergiolide, Seribantumab, Serine/Threonine Kinase Inhibitor CBP501, Serine/Threonine Kinase Inhibitor XL418, Serplulimab, Sevacizumab, Seviteronel, Shared Anti-Idiotype-AB-S006, Shared Anti-Idiotype-AB-S024A, Shark Cartilage, Shark Cartilage Extract AE-941, Shenqi Fuzheng Injection SQ001, Sho-Saiko-To, Short Chain Fatty Acid HQK-1004, SHP-1 Agonist SC-43, SHP2 Inhibitor JAB-3068, SHP2 Inhibitor RLY-1971, SHP2 Inhibitor RMC-4630, SHP2 Inhibitor TNO155, Shu Yu Wan Formula, Sialyl Tn Antigen, Sialyl Tn-KLH Vaccine, Sibrotuzumab, siG12D LODER, Silatecan AR-67, Silibinin, Silicon Phthalocyanine 4, Silmitasertib Sodium, Siltuximab, Simalikalactone D, Simeprevir, Simlukafusp Alfa, Simmitinib, Simotaxel, Simtuzumab, Simurosertib, Sintilimab, Siplizumab, Sipuleucel-T, Siremadlin, siRNA-transfected Peripheral Blood Mononuclear Cells APN401, Sirolimus, SIRPa-4-1BBL Fusion Protein DSP107, SIRPa-Fc Fusion Protein TTI-621, SIRPa-Fc-CD40L Fusion Protein SL-172154, SIRPa-IgG4-Fc Fusion Protein TTI-622, Sitimagene Ceradenovec, Sitravatinib, Sivifene, Sizofiran, SLC6A8 Inhibitor RGX-202, SLCT Inhibitor GNS561, SMAC Mimetic BI 891065, Smac Mimetic GDC-0152, Smac Mimetic GDC-0917, Smac Mimetic LCL161, SMO Protein Inhibitor ZSP1602, Smoothened Antagonist BMS-833923, Smoothened Antagonist LDE225 Topical, Smoothened Antagonist LEQ506, Smoothened Antagonist TAK-441, SN-38-Loaded Polymeric Micelles NK012, SNS01-T Nanoparticles, Sobuzoxane, Sodium Borocaptate, Sodium Butyrate, Sodium Dichloroacetate, Sodium Iodide I-131, Sodium Metaarsenite, Sodium Phenylbutyrate, Sodium Salicylate, Sodium Selenite, Sodium Stibogluconate, Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108, Sofituzumab Vedotin, Solitomab, Sonepcizumab, Sonidegib, Sonolisib, Sorafenib, Sorafenib Tosylate, Sorghum bicolor Supplement, Sotigalimab, Sotorasib, Sotrastaurin, Sotrastaurin Acetate, Soy Isoflavones, Soy Protein Isolate, Spanlecortemlocel, Sparfosate Sodium, Sparfosic Acid, Spartalizumab, Spebrutinib, Spherical Nucleic Acid Nanoparticle NU-0129, Spirogermanium, Spiromustine, Spiroplatin, Splicing Inhibitor H3B-8800, Spongistatin, Squalamine Lactate, SR-BP1/HSI Inhibitor SR31747A, SR-T100 Gel, Src Kinase Inhibitor AP 23846, Src Kinase Inhibitor KX2-391, Src Kinase Inhibitor KX2-391 Ointment, Src Kinase Inhibitor M475271, Src/Abl Kinase Inhibitor AZD0424, Src/tubulin Inhibitor KX02, SRPK1/ABCG2 Inhibitor SCO-101, ssRNA-based Immunomodulator CV8102, SSTR2-targeting Protein/DM1 Conjugate PEN-221, St. John's Wort, Stallimycin, Staphylococcal Enterotoxin A, Staphylococcal Enterotoxin B, STAT Inhibitor OPB-111077, STAT3 Inhibitor DSP-0337, STAT3 Inhibitor OPB-31121, STAT3 Inhibitor OPB-51602, STAT3 Inhibitor TTI-101, STAT3 Inhibitor WP1066, Staurosporine, STING Agonist BMS-986301, STING Agonist GSK3745417, STING Agonist IMSA101, STING Agonist MK-1454, STING Agonist SB 11285, STING Agonist TAK-676, STING-activating Cyclic Dinucleotide Agonist MIW815, STING-expressing E. coli SYNB1891, Streptonigrin, Streptozocin, Strontium Chloride Sr-89, Submicron Particle Paclitaxel Sterile Suspension, Sugemalimab, Sulfatinib, Sulforaphane, Sulindac, Sulofenur, Sumoylation Inhibitor TAK-981, Sunitinib, Sunitinib Malate, Super Enhancer Inhibitor GZ17-6.02, Superagonist Interleukin-15:Interleukin-15 Receptor alphaSu/Fc Fusion Complex ALT-803, Superoxide Dismutase Mimetic GC4711, Suramin, Suramin Sodium, Survivin Antigen, Survivin Antigen Vaccine DPX-Survivac, Survivin mRNA Antagonist EZN-3042, Survivin-expressing CVD908ssb-TXSVN Vaccine, Sustained-release Lipid Inhaled Cisplatin, Sustained-release Mitomycin C Hydrogel Formulation UGN-101, Sustained-release Mitomycin C Hydrogel Formulation UGN-102, Syk Inhibitor HMPL-523, Synchrotope TA2M Plasmid DNA Vaccine, Synchrovax SEM Plasmid DNA Vaccine, Synthetic Alkaloid PM00104, Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2, Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1, Synthetic hTERT DNA Vaccine INO-1400, Synthetic hTERT DNA Vaccine INO-1401, Synthetic Hypericin, Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201, Synthetic Long E6/E7 Peptides Vaccine HPV-01, Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b, Synthetic Plumbagin PCUR-101, T900607, Tabalumab, Tabelecleucel, Tacedinaline, Tafasitamab, Tagraxofusp-erzs, Talabostat, Talabostat Mesylate, Talacotuzumab, Talactoferrin Alfa, Taladegib, Talampanel, Talaporfin Sodium, Talazoparib, Taletrectinib, Talimogene Laherparepvec, Tallimustine, Talmapimod, Talotrexin, Talotrexin Ammonium, Taltobulin, TAM/c-Met Inhibitor RXDX-106, Tamibarotene, Taminadenant, Tamoxifen, Tamoxifen Citrate, Tamrintamab Pamozirine, Tandutinib, Tanespimycin, Tanibirumab, Tankyrase Inhibitor STP1002, Tanomastat, Tapotoclax, Tarenflurbil, Tarextumab, Tariquidar, Tasadenoturev, Taselisib, Tasidotin, Tasisulam, Tasisulam Sodium, Tasquinimod, Taurolidine, Tauromustine, Taurultam, Taurultam Analogue GP-2250, Tavokinogene Telseplasmid, Tavolimab, Taxane Analogue TPI 287, Taxane Compound, Taxol Analogue SID 530, Tazarotene, Tazemetostat, Tebentafusp, Teclistamab, Tecogalan Sodium, Tefinostat, Tegafur, Tegafur-gimeracil-oteracil Potassium, Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation, Tegafur-Uracil, Tegavivint, Teglarinad, Teglarinad Chloride, Telaglenastat, Telaglenastat Hydrochloride, Telapristone, Telapristone Acetate, Telatinib Mesylate, Telisotuzumab, Telisotuzumab Vedotin, Telomerase Inhibitor FJ5002, Telomerase-specific Type 5 Adenovirus OBP-301, Teloxantrone, Teloxantrone Hydrochloride, Telratolimod, Temarotene, Temoporfin, Temozolomide, Temsirolimus, Tenalisib, Tenifatecan, Teniposide, Tepoditamab, Tepotinib, Teprotumumab, Terameprocol, Terfluranol, Tergenpumatucel-L, Teroxirone, Tertomotide, Tesetaxel, Tesevatinib, Tesidolumab, Testolactone, Testosterone Enanthate, Tetanus Toxoid Vaccine, Tetradecanoylphorbol Acetate, Tetrahydrouridine, Tetraphenyl Chlorin Disulfonate, Tetrathiomolybdate, Tezacitabine, Tezacitabine Anhydrous, TGF-beta Receptor 1 Inhibitor PF-06952229, TGF-beta Receptor 1 Kinase Inhibitor SH3051, TGF-beta Receptor 1 Kinase Inhibitor YL-13027, TGFa-PE38 Immunotoxin, TGFbeta Inhibitor LY3200882, TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200, Thalicarpine, Thalidomide, Theliatinib, Theramide, Therapeutic Angiotensin-(1-7), Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907, Therapeutic Cancer Vaccine ATP128, Therapeutic Estradiol, Therapeutic Hydrocortisone, Therapeutic Liver Cancer Peptide Vaccine IMA970A, Thiarabine, Thiodiglycol, Thioguanine, Thioguanine Anhydrous, Thioinosine, Thioredoxin-1 Inhibitor PX-12, Thiotepa, Thioureidobutyronitrile, THL-P, Thorium Th 227 Anetumab, Thorium Th 227 Anetumab Corixetan, Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439, Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497, Threonine Tyrosine Kinase Inhibitor CFI-402257, Thymidylate Synthase Inhibitor CX1106, Thymidylate Synthase Inhibitor DFP-11207, Thymopentin, Thyroid Extract, Tiazofurin, Tidutamab, Tigapotide, Tigatuzumab, TIGIT Inhibitor M6223, TIGIT-targeting Agent MK-7684, Tilarginine, Tilogotamab, Tilsotolimod Sodium, Timonacic, Tin Ethyl Etiopurpurin, Tinostamustine, Tinzaparin Sodium, Tiomolibdate Choline, Tiomolibdate Diammonium, Tipapkinogene Sovacivec, Tipifarnib, Tipiracil, Tipiracil Hydrochloride, Tirabrutinib, Tiragolumab, Tirapazamine, Tirbanibulin, Tisagenlecleucel, Tislelizumab, Tisotumab Vedotin, Tivantinib, Tivozanib, TLC ELL-12, TLR Agonist BDB001, TLR Agonist BSG-001, TLR Agonist CADI-05, TLR-Directed Cationic Lipid-DNA Complex JVRS-100, TLR7 Agonist 852A, TLR7 agonist BNT411, TLR7 Agonist LHC165, TLR7/8/9 Antagonist IMO-8400, TLR8 Agonist DN1508052, TLR9 Agonist AST-008, TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells, Tocilizumab, Tocladesine, Tocotrienol, Tocotrienol-rich Fraction, Tolebrutinib, Toll-like Receptor 7 Agonist DSP-0509, Tolnidamine, Tomaralimab, Tomato-Soy Juice, Tomivosertib, Topical Betulinic Acid, Topical Celecoxib, Topical Fluorouracil, Topical Gemcitabine Hydrochloride, Topical Potassium Dobesilate, Topical Trichloroacetic Acid, Topixantrone, Topoisomerase I Inhibitor Genz-644282, Topoisomerase I Inhibitor LMP400, Topoisomerase I Inhibitor LMP776, Topoisomerase I/II Inhibitor NEV-801, Topoisomerase-1 Inhibitor LMP744, Topoisomerase-II Inhibitor Racemic XK469, Topoisomerase-II-beta Inhibitor Racemic XK469, Topotecan, Topotecan Hydrochloride, Topotecan Hydrochloride Liposomes, Topotecan Sustained-release Episcleral Plaque, Topsalysin, TORC1/2 Kinase Inhibitor DS-3078a, Toremifene, Toremifene Citrate, Toripalimab, Tosedostat, Tositumomab, Total Androgen Blockade, Tovetumab, Tozasertib Lactate, TP40 Immunotoxin, Trabectedin, Trabedersen, TRAIL Receptor Agonist ABBV-621, Trametinib, Trametinib Dimethyl Sulfoxide, Trans Sodium Crocetinate, Transdermal 17beta-Estradiol Gel BHR-200, Transdermal 4-Hydroxytestosterone, Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01, Transferrin Receptor-Targeted Liposomal p53 cDNA, Transferrin-CRM107, Tranylcypromine Sulfate, Trapoxin, Trastuzumab, Trastuzumab Conjugate BI-CON-02, Trastuzumab Deruxtecan, Trastuzumab Duocarmazine, Trastuzumab Emtansine, Trastuzumab Monomethyl Auristatin F, Trastuzumab-TLR 7/8 Agonist BDC-1001, Trastuzumab/Hyaluronidase-oysk, Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502, Trebananib, Tremelimumab, Treosulfan, Tretazicar, Tretinoin, Tretinoin Liposome, Triamcinolone Acetonide, Triamcinolone Hexacetonide, Triapine, Triazene Derivative CB10-277, Triazene Derivative TriN2755, Triazinate, Triaziquone, Tributyrin, Triciribine Phosphate, Trientine Hydrochloride, Triethylenemelamine, Trifluridine, Trifluridine and Tipiracil Hydrochloride, Trigriluzole, Trilaciclib, Trimelamol, Trimeric GITRL-Fc OMP-336B11, Trimethylcolchicinic Acid, Trimetrexate, Trimetrexate Glucuronate, Trioxifene, Triplatin Tetranitrate, Triptolide Analog, Triptorelin, Triptorelin Pamoate, Tris-acryl Gelatin Microspheres, Tritylcysteine, TRK Inhibitor AZD6918, TRK Inhibitor TQB3558, TrkA Inhibitor VMD-928, Trodusquemine, Trofosfamide, Troglitazone, Tropomyosin Receptor Kinase Inhibitor AZD7451, Troriluzole, Troxacitabine, Troxacitabine Nucleotide Prodrug MIV-818, TRPM8 Agonist D-3263, TRPV6 Calcium Channel Inhibitor SOR-C13, TSP-1 Mimetic ABT-510, TSP-1 Mimetic Fusion Protein CVX-045, Tubercidin, Tubulin Binding Agent TTI-237, Tubulin Inhibitor ALB 109564 Dihydrochloride, Tubulin Inhibitor ALB-109564, Tubulin Polymerization Inhibitor AEZS 112, Tubulin Polymerization Inhibitor CKD-516, Tubulin Polymerization Inhibitor VERU-111, Tubulin-Binding Agent SSR97225, Tucatinib, Tucidinostat, Tucotuzumab Celmoleukin, Tyroserleutide, Tyrosinase Peptide, Tyrosinase-KLH, Tyrosinase:146-156 Peptide, Tyrosine Kinase Inhibitor, Tyrosine Kinase Inhibitor OSI-930, Tyrosine Kinase Inhibitor SU5402, Tyrosine Kinase Inhibitor TL-895, Tyrosine Kinase Inhibitor XL228, UAE Inhibitor TAK-243, Ubenimex, Ubidecarenone Nanodispersion BPM31510n, Ublituximab, Ulinastatin, Ulixertinib, Ulocuplumab, Umbralisib, Uncaria tomentosa Extract, Upamostat, Upifitamab, Uproleselan, Uprosertib, Urabrelimab, Uracil Ointment, Urelumab, Uroacitides, Urokinase-Derived Peptide A6, Ursolic Acid, USP14/UCHL5 Inhibitor VLX1570, Utomilumab, Uzansertib, V930 Vaccine, Vaccine-Sensitized Draining Lymph Node Cells, Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules, Vactosertib, Vadacabtagene Leraleucel, Vadastuximab Talirine, Vadimezan, Valecobulin, Valemetostat, Valproic Acid, Valrubicin, Valspodar, Vandetanib, Vandetanib-eluting Radiopaque Bead BTG-002814, Vandortuzumab Vedotin, Vantictumab, Vanucizumab, Vapreotide, Varlilumab, Varlitinib, Varlitinib Tosylate, Vascular Disrupting Agent BNC105, Vascular Disrupting Agent BNC105P, Vascular Disrupting Agent ZD6126, Vatalanib, Vatalanib Succinate, Vecabrutinib, Vector-peptide Conjugated Paclitaxel, Vedolizumab, VEGF Inhibitor PTC299, VEGF/HGF-targeting DARPin MP0250, VEGFR Inhibitor KRN951, VEGFR-2 DNA Vaccine VXM01, VEGFR/FGFR Inhibitor ODM-203, VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593, VEGFR2 Tyrosine Kinase Inhibitor PF-00337210, VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813, Veliparib, Veltuzumab, Vemurafenib, Venetoclax, Verapamil, Verpasep Caltespen, Verubulin, Verubulin Hydrochloride, Vesencumab, Vesigenurtucel-L, VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220, VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820, Viagenpumatucel-L, Vibecotamab, Vibostolimab, Vilaprisan, Vinblastine, Vinblastine Sulfate, Vincristine, Vincristine Liposomal, Vincristine Sulfate, Vincristine Sulfate Liposome, Vindesine, Vinepidine, Vinflunine, Vinflunine Ditartrate, Vinfosiltine, Vinorelbine, Vinorelbine Tartrate, Vinorelbine Tartrate Emulsion, Vinorelbine Tartrate Oral, Vintafolide, Vinzolidine, Vinzolidine Sulfate, Virulizin, Vismodegib, Vistusertib, Vitamin D3 Analogue ILX23-7553, Vitamin E Compound, Vitespen, VLP-encapsulated TLR9 Agonist CMP-001, Vocimagene Amiretrorepvec, Vofatamab, Volasertib, Volociximab, Vonlerolizumab, Vopratelimab, Vorasidenib, Vorinostat, Vorolanib, Vorsetzumab Mafodotin, Vosaroxin, Vosilasarm, Voxtalisib, Vulinacimab, Warfarin Sodium, Wee1 Inhibitor ZN-c3, Wee1 Kinase Inhibitor Debio 0123, White Carrot, Wnt Signaling Inhibitor SM04755, Wnt Signaling Pathway Inhibitor SM08502, Wnt-5a Mimic Hexapeptide Foxy-5, Wobe-Mugos E, WT1 Peptide Vaccine OCV-501, WT1 Peptide Vaccine WT2725, WT1 Protein-derived Peptide Vaccine DSP-7888, WT1-A10/AS01B Immunotherapeutic GSK2130579A, WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401, Xanthohumol, XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410, Xeloda, Xentuzumab, Xevinapant, Xiaoai Jiedu Decoction, XIAP Antisense Oligonucleotide AEG35156, XIAP/cIAP1 Antagonist ASTX660, Xiliertinib, Xisomab 3G3, XPO1 Inhibitor SL-801, Y 90 Monoclonal Antibody CC49, Y 90 Monoclonal Antibody HMFG1, Y 90 Monoclonal Antibody Lym-1, Y 90 Monoclonal Antibody m170, Y 90 Monoclonal Antibody M195, Yang Yin Fu Zheng, Yangzheng Xiaoji Extract, Yiqi-yangyin-jiedu Herbal Decoction, Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8, Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101, Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66, Yttrium Y 90 Basiliximab, Yttrium Y 90 Colloid, Yttrium Y 90 Daclizumab, Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A, Yttrium Y 90 Glass Microspheres, Yttrium Y 90 Monoclonal Antibody B3, Yttrium Y 90 Monoclonal Antibody BrE-3, Yttrium Y 90 Monoclonal Antibody Hu3S193, Yttrium Y 90 Monoclonal Antibody MN-14, Yttrium Y 90 Resin Microspheres, Yttrium Y 90 Tabituximab Barzuxetan, Yttrium Y 90-DOTA-Biotin, Yttrium Y 90-DOTA-di-HSG Peptide IMP-288, Yttrium Y 90-Edotreotide, Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101, Yttrium Y-90 Clivatuzumab Tetraxetan, Yttrium Y-90 Epratuzumab Tetraxetan, Yttrium Y-90 Ibritumomab Tiuxetan, Yttrium Y-90 Tacatuzumab Tetraxetan, Yttrium-90 Polycarbonate Brachytherapy Plaque, Z-Endoxifen Hydrochloride, Zalcitabine, Zalifrelimab, Zalutumumab, Zandelisib, Zanidatamab, Zanolimumab, Zanubrutinib, Zebularine, Zelavespib, Zibotentan, Zinc Finger Nuclease ZFN-603, Zinc Finger Nuclease ZFN-758, Zinostatin, Zinostatin Stimalamer, Zirconium Zr 89 Panitumumab, Ziv-Aflibercept, Zolbetuximab, Zoledronic Acid, Zoptarelin Doxorubicin, Zorifertinib, Zorubicin, Zorubicin Hydrochloride, Zotatifin, Zotiraciclib Citrate, Zuclomiphene Citrate, Unknown, Not Reported",,FALSE,,,,, -Model Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,TRUE,,,,CDS Metadata v1.3.3/Diagnosis, -Model Site of Origin,The text term used to describe the anatomic site of origin associated with the malignant disease model.,"Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,TRUE,,,,CDS Imaging v1.0/File information, -Model Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS v5.0.4/Diagnosis, -Model Days to Treatment,Number of days between the date used for index and the date the treatment started.,,,FALSE,,,,CDS v5.0.4/Treatment, -Model Treatment Response,Text term that describes the model's response after the treatment was administered.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS v5.0.4/Treatment, -Name,Name of the individual,,,TRUE,,,,, -Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Email,Email address of the individual,,,FALSE,,,,, -Url,"URL, e.g., individual's home page address",,,FALSE,,,,, -Orcid Id,Unique identifier (ORCID ID) of the individual,,,FALSE,,,,,regex search \d{4}\-\d{4}\-\d{4}\-\d{3}(\d|X) -Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,,,FALSE,,,,,unique -Last Known Institution,Last known institutional affiliation of the individual.,,,TRUE,,,,, -Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,TRUE,,,,,list like -Chair Roles,"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.","Annual Meeting, None, Steering Committee, Working Group",,TRUE,,,,,list like -Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,TRUE,,,,, -Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, -Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,Grant View,, -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like -Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -PersonView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Project Name,Name of the project,,,TRUE,,,,, -Project Type,Type of project,"Core, Project",,TRUE,,,,, -Project Description,Description of the project,,,TRUE,,,,, -Project Investigator,Investigator(s) associated witht the project.,,,TRUE,,,,,list like -Project View,The denormalized manifest for project submission.,,"Component, ProjectView_id, GrantView Key, Project Name, Project Type, Project Description, Project Investigator",FALSE,,,Grant View,, -Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Project Consortium Name,Consortia associated with the project.,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, -ProjectView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,FALSE,,,,,unique -Publication Journal,The name of the periodical publication in which the publication was published.,,,TRUE,,,,, -Pubmed Id,The PubMed identifier associated with the publication.,,,TRUE,,,,,unique -Pubmed Url,Pubmed URL for the publication,,,TRUE,,,,,url -Publication Title,Title of the publication,,,TRUE,,,,, -Publication Year,Year of the publication,,,TRUE,,,,, -Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like -Publication Abstract,The abstract of the publication.,,,TRUE,,,,, -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like -Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like -Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, -Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, GrantView Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,Study,, -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like -PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, -SequencingLevel1_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique -NGS Sequencing Coverage,Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length),,,FALSE,,,,CDS/Genomic info,num -NGS Read Length,"The average length of the sequencing reads. Can be integer, null",,,TRUE,,,,HTAN,num -NGS Library Selection Method,How nucleic acid molecules are isolated.,"5-methylcytidine antibody, CAGE, rRNA Depletion, cDNA, cDNA oligo_dT, cDNA random priming, CF-H, CF-M, CF-S, CF-T, Poly-T Enrichment, ChIP, DNAse, HMPR, Hybrid Selection, Not applicable, Inverse rRNA, MBD2 protein methyl-CpG binding domain, miRNA Size Fractionation, MDA, MF, MNase, MSLL, Oligo-dT, Other, Padlock probes capture method, PCR, PolyA, RACE, Random, Random PCR, Reduced Representation, Repeat fractionation, Restriction Digest, RT-PCR, Size fractionation, Affinity Enrichment, Unspecified",,FALSE,,,,HTAN,str -NGS Library Strategy,"The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)","AMPLICON, ATAC-seq, Bisulfite-Seq, ChIA-PET, ChIP-Seq, CLONE, CLONEEND, CTS, Spatial-tx, snATAC-Seq, DNase-Hypersensitivity, scMultiome, EST, FAIRE-seq, FINISHING, FL-cDNA, Hi-C, MBD-Seq, MeDIP-Seq, miRNA-Seq, MNase-Seq, MRE-Seq, ncRNA-Seq, Other, POOLCLONE, RAD-Seq, RIP-Seq, RNA-Seq, SELEX, DNA-Seq, ssRNA-seq, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, Tn-Seq, WCS, WGA, WGS, WXS",,TRUE,,,,CDS/sequencing,str -NGS Library Source,The type of source material being sequenced.,"Genomic, Genomic Single Cell, Metagenomic, Single Nucleus, Single Cell, Metatranscriptomic, Other, Synthetic, Transcriptomic, Transcriptomic Single Cell, Viral RNA",,TRUE,,,,CDS/sequencing,str -NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,CDS/sequencing,str -NGS Library Preparation Kit Name,Name of Library Preparation Kit. String,,,FALSE,,,,HTAN,str -NGS Library Preparation Kit Vendor,Vendor of Library Preparation Kit. String,,,FALSE,,,,HTAN,str -NGS Library Preparation Kit Version,Version of Library Preparation Kit. String,,,FALSE,,,,HTAN,str -NGS Sequencing Platform,A platform is an object aggregate that is the set of instruments and software needed to perform a process [OBI_0000050]. Specific model of the sequencing instrument.,"454 GS, 454 GS 20, 454 GS FLX, 454 GS FLX Titanium, 454 GS FLX+, 454 GS Junior, AB 310 Genetic Analyzer, AB 3130 Genetic Analyzer, AB 3130xL Genetic Analyzer, AB 3500 Genetic Analyzer, AB 3500xL Genetic Analyzer, AB 3730 Genetic Analyzer, AB 3730xL Genetic Analyzer, AB 5500 Genetic Analyzer, AB 5500x-Wl Genetic Analyzer, AB 5500xl Genetic Analyzer, AB SOLiD 2, AB SOLiD 3, AB SOLiD 3 Plus System, AB SOLiD 4, AB SOLiD 4hq System, AB SOLiD PI System, AB SOLiD System, BGISEQ-500, Complete Genomics, DNBSEQ-G400, DNBSEQ-G50, DNBSEQ-T7, GridION, Helicos HeliScope, Illumina Genome Analyzer, Illumina Genome Analyzer II, Illumina Genome Analyzer IIx, Illumina HiScanSQ, Illumina HiSeq 1000, Illumina HiSeq 1500, Illumina HiSeq 2000, Illumina HiSeq 2500, Illumina HiSeq 3000, Illumina HiSeq 4000, Illumina HiSeq X Five, Illumina HiSeq X Ten, Illumina iSeq 100, Illumina MiniSeq, Illumina MiSeq, Illumina NextSeq, Illumina NextSeq 2500, Illumina NextSeq 500, Illumina NextSeq 550, Illumina NovaSeq, Illumina NovaSeq 6000, Illumina NovaSeq X Plus, Ion Torrent PGM, Ion Torrent Proton, Ion Torrent S5, Ion Torrent S5 XL, MGISEQ-2000RS, MinION, Not Reported, Other, PacBio RS, PacBio RS II, PacBio Sequel, PacBio Sequel II, PromethION, Ultima Genomics UG100, Unknown",,TRUE,,,,HTAN,str -NGS Sequencing Design Description,Free-form description of the methods used to create the sequencing library; a brief 'materials and methods' section.,,,TRUE,,,,CDS/sequencing,str -NGS Read Indicator,"Indicate if this is Read 1 (R1), Read 2 (R2), Index Reads (I1), or Other","R1, R2, R1&R2, I1, Other",,TRUE,,,,HTAN,str -NGS Library Preparation Days from Index,Number of days between sample for assay was received in lab and the libraries were prepared for sequencing [number]. If not applicable please enter 'Not Applicable',,,FALSE,,,,HTAN,regex match \d+$|Not\sApplicable$|unknown$ -NGS Sequencing Library Construction Days from Index,Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable',,,TRUE,,,,HTAN,regex match \d+$|Not\sApplicable$|unknown$ -NGS Unique Bases,Count of unique basecalls present in the data.,,,FALSE,,,,CDS/Sequencing,num -NGS Raw Reads,Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file. ,,,FALSE,,,,CDS/Sequencing,num -Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, -SequencingLevel2_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique -NGS Stitched Reads,"Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads",,,FALSE,,,,HTAN,num -NGS Aligned Reads,Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.,,,FALSE,,,,HTAN,num -NGS Deduplicated Reads,Is the replacement of blocks of duplicate data with a Virtual Index Pointer linking the new sub-block to the existing block of data in a duplicate repository. This is used to reduce the amount of space need to store the data.,,,FALSE,,,,HTAN,num -NGS Trimmed Reads,Number of the reads remaining after trimming has been applied.,,,FALSE,,,,STE,num -NGS MapQ30,Number of reads with Quality >= 30.,,,FALSE,,,,HTAN,num -Sequencing Level 3,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel3_id, SequencingLevel2 Key, Filename, NGS Unique Probe Count, NGS Unique Target Count, NGS Matrix Type, Software and Version, Workflow Type, Workflow Parameter Description, Workflow Link",FALSE,,,,, -SequencingLevel3_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique -NGS Unique Probe Count,Total number of unique probes reported.,,,FALSE,,,,HTAN,num -NGS Unique Target Count,Total number of unique genes reported.,,,FALSE,,,,HTAN,num -NGS Matrix Type,Type of count data stored in matrix.,"Raw Counts, Normalized Counts, Scaled Counts, Batch Corrected Counts",,FALSE,,,,HTAN, -Sequencing RNA Level 1,Unaligned/unprocessed RNA sequencing data ,,"Component, SequencingRNALevel1_id, Filename, NGS RNA End Bias, NGS RNA Reverse Transcription Primer, NGS RNA RIN, NGS RNA DV200",FALSE,,,Sequencing Level 1,MC2, -SequencingRNALevel1_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique -NGS RNA End Bias,"The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript","3 Prime, 5 Prime, Full Length Transcript",,TRUE,,,,HTAN,str -NGS RNA Reverse Transcription Primer,"An oligo to which new deoxyribonucleotides can be added by DNA polymerase [SO_0000112]. The type of primer used for reverse transcription, e.g. oligo-dT or random primer. This allows users to identify content of the cDNA library input e.g. enriched for mRNA","Oligo-dT, Poly-dT, Feature barcoding, Random",,TRUE,,,,HTAN,str -NGS RNA RIN,A numerical assessment of the integrity of RNA based on the entire electrophoretic trace of the RNA sample including the presence or absence of degradation products. Number,,,FALSE,,,,HTAN,num -NGS RNA DV200,Represents the percentage of RNA fragments that are >200 nucleotides in size. Number,,,FALSE,,,,HTAN,num -Component,"Category of metadata (e.g. Tools, Publications, etc.); provide the same one for all items/rows.",,,TRUE,,shared,,, -Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,shared,,Data Use Ontology,list like -ProjectView Key,"Unique ProjectView_id foreign key(s) that group the resource with other components, as part of the same grant-associated studies. Please provide multiple values as a comma-separated list.",,,FALSE,,project,,MC2,matchAtLeastOne ProjectView.ProjectView_id Value -Study Key,"The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components. Please provide multiple values as a comma-separated list.",,,FALSE,,study,,MC2,matchAtLeastOne Study.Study_id Value -PersonView Key,"Unique PersonView_id foreign key(s) that group the resource with other components, as part of the same person-associated studies. Please provide multiple values as a comma-separated list.",,,FALSE,,person,,MC2,matchAtLeastOne PersonView.PersonView_id Value -Consortium Key,"Unique Consortium_id foreign key(s) that group the resource with other components, as part of the same consortium-associated grants. Please provide multiple values as a comma-separated list.",,,FALSE,,consortium,,MC2,matchAtLeastOne Consortium.Consortium_id Value -GrantView Key,"Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection. Please provide multiple values as a comma-separated list.",,,FALSE,,grant,,MC2,matchAtLeastOne GrantView.GrantView_id Value -DatasetView Key,Unique DatasetView_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,dataset,,MC2,matchAtLeastOne DatasetView.DatasetView_id Value -Biospecimen Key,Unique Biospecimen_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,biospecimen,,MC2,matchAtLeastOne Biospecimen.Biospecimen_id Value -Individual Key,Unique Individual_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,individual,,MC2,matchAtLeastOne Individual.Individual_id Value -PublicationView Key,Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,publication,,MC2,matchAtLeastOne PublicationView.PublicationView_id Value -ToolView Key,Unique ToolView_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,tool,,MC2,matchAtLeastOne ToolView.ToolView_id Value -EducationalResource Key,Unique EducationalResource_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,education,,MC2,matchAtLeastOne EducationalResource.EducationalResource_id Value -DataDSP Key,Unique DataDSP_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,sharingPlans,,MC2,matchAtLeastOne DataDSP.DataDSP_id Value -Model Key,Unique Model_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separate list.,,,FALSE,,model,,MC2,matchAtLeastOne Model.Model_id Value -FileView Key,Unique FileView_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,file,,MC2,matchAtLeastOne FileView.FileView_id Value -NanoStringGeoMxAuxiliaryFiles Key,Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxAuxiliaryFiles.NanoStringGeoMxAuxiliaryFiles_id Value -NanoStringGeoMxDSPImaging Key,Unique NanoStringGeoMxDSPImaging_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPImaging.NanoStringGeoMxDSPImaging_id Value -NanoStringGeoMxDSPLevel1 Key,Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPLevel1.NanoStringGeoMxDSPLevel1_id Value -NanoStringGeoMxDSPLevel2 Key,Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPLevel2.NanoStringGeoMxDSPLevel2_id Value -NanoStringGeoMxDSPLevel3 Key,Unique NanoStringGeoMxDSPLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPLevel3.NanoStringGeoMxDSPLevel3_id Value -NanoStringGeoMXROISegmentAnnotation Key,Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMXROISegmentAnnotation.NanoStringGeoMXROISegmentAnnotation_id Value -ImagingChannel Key,Unique ImagingChannel_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,TRUE,,imaging,,MC2,matchAtLeastOne ImagingChannel.ImagingChannel_id Value -ImagingLevel1 Key,Unique ImagingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel1.ImagingLevel1_id Value -ImagingLevel2 Key,Unique ImagingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel2.ImagingLevel2_id Value -ImagingLevel3Image Key,Unique ImagingLevel3Image_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel3Image.ImagingLevel3Image_id Value -ImagingLevel3Segments Key,Unique ImagingLevel3Segments_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel3Segments.ImagingLevel3Segments_id Value -ImagingLevel4 Key,Unique ImagingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel4.ImagingLevel4_id Value -SequencingLevel1 Key,Unique SequencingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel1.SequencingLevel1_id Value -SequencingLevel2 Key,Unique SequencingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel2.SequencingLevel2_id Value -SequencingLevel3 Key,Unique SequencingLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel3.SequencingLevel3_id Value -SequencingLevel4 Key,Unique SequencingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel4.SequencingLevel4_id Value -SequencingRNALevel1 Key,Unique SequencingRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing RNA,,MC2,matchAtLeastOne SequencingRNALevel1.SequencingRNALevel1_id Value -10xVisiumRNALevel1 Key,Unique 10xVisiumRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel1.10xVisiumRNALevel1_id Value -10xVisiumRNALevel2 Key,Unique 10xVisiumRNALevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel2.10xVisiumRNALevel2_id Value -10xVisiumRNALevel3 Key,Unique 10xVisiumRNALevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel3.10xVisiumRNALevel3_id Value -10xVisiumRNALevel4 Key,Unique 10xVisiumRNALevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel4.10xVisiumRNALevel4_id Value -10xVisiumAuxiliaryFiles Key,Unique 10xVisiumAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumAuxiliaryFiles.10xVisiumAuxiliaryFiles_id Value -Filename,"The path of a file in Synapse, relative to the project. The file associated with the path will be annotated with attributes contained in this sheet.",,,TRUE,,shared,,MC2,str -Workflow Type,Type of computational workflow used to generate the file.,,,FALSE,,shared,,HTAN,str -Workflow Link,Link to documentation or webpage associated with the computational workflow used to generate the file.,,,FALSE,,shared,,HTAN,url -Workflow Parameter Description,Link or text description of flags or options provided to the workflow used to generate the file.,,,FALSE,,shared,,HTAN,str -Software and Version,Name of software used to generate the information contained in the file. String,,,FALSE,,shared,,HTAN,str -Workflow Version,Major version of the workflow (e.g. Cell Ranger v3.1),,,FALSE,,shared,,HTAN,str -Genomic Reference,Exact version of the human genome reference used in the alignment of reads (e.g. GCF_000001405.39),,,TRUE,,shared,,HTAN,str -Genomic Reference URL,Link to human genome sequence; ftp or reference URL will be accepted.,,,TRUE,,shared,,HTAN,url -Genome Annotation URL,Link to the human genome annotation (GTF) file; ftp or reference URL will be accepted.,,,TRUE,,shared,,HTAN,url -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, -DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like -DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like -DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like -DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like -DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like -DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num -DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,FALSE,,,,,num -DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,FALSE,,,,,num -DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,FALSE,,,,,num -DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,TRUE,,,,,date -DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date -DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like -DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url -DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url -DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like -DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ -DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str -DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str -DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like -DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, -Study Name,Name of the study,,,TRUE,,,,,str -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str -Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,FALSE,,,,,str -Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int -Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, -Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, -Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str -Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str -Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str -Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like -Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, -Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, +Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules +Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, +Biospecimen_id,"Unique ID associated with a biosample, used as a key for record linking and updates",,,TRUE,,,,MC2,unique +Biospecimen Type Category,The general category of this biospecimen.,"Analyte, Ascites, Blood, Bone Marrow, Cells, Fluids, Mouth Rinse, Sputum, Stool, Tissue, Urine",,TRUE,,,,HTAN, +Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,TRUE,,,,HTAN, +Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like +Biospecimen Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0, +Biospecimen Age at Collection,Age at the time the biospecimen was collected. Please provide the unit in field Biospecimen Age at Collection Unit.,,,FALSE,,,,HTAN,num +Biospecimen Age at Collection Unit,Unit associated with age at the time the biospecimen was collected.,,,FALSE,,,,HTAN,str +Biospecimen Disease Type,"The type of tumor associated with the specimen. Multiple values permitted, comma separated.","Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,MC2, +Biospecimen Tumor Subtype,"The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.",,,FALSE,,,,MC2/STE,str +Biospecimen Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, +Biospecimen Composition,"The text term used to describe the type(s) of tissue contained in the biospecimen. Multiple values permitted, comma separated.","Additional Primary, Atypia or hyperplasia, Local recurrence, Metastatic, Normal, Normal adjacent, Normal distant, NOS, Not applicable, Not reported, Premalignant, Premalignant - in situ, Primary, Recurrent, Tissue, Tumor post-adjuvant therapy, Tumor post-neoadjuvant therapy, Tumor post-therapy, Tumor specimen from de novo untreated malignancy of the bladder, Unknown, Xenograft",,FALSE,,,,CDS Imaging v1.0,list like +Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,FALSE,,,,CDS Imaging v1.0/multiplex microscopy, +Biospecimen Preservation Method,Text term that represents the method used to preserve the sample.,"Cryopreserved, Cryopreservation in liquid nitrogen - dead tissue, Cryopreservation in dry ice - dead tissue, Cryopreservation in liquid nitrogen - live cells, Formalin fixed paraffin embedded - FFPE, Formalin fixed-unbuffered, Formalin fixed-buffered, Fresh, Fresh dissociated and single cell sorted into plates in NP40 buffer, OCT, Snap Frozen, Frozen, Negative 80 Deg C, Liquid Nitrogen, Fresh dissociated, Fresh dissociated and single cell sorted, Fresh dissociated and single cell sorted into plates, Methacarn fixed paraffin embedded - MFPE, unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, +Biospecimen Anatomic Site,Text term that represents the name of the primary disease site of the submitted tumor sample.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0/non-DICOM pathology, +Biospecimen Site of Resection or Biopsy,The text term used to describe the anatomic site of the resection or biopsy of the patient's malignant disease.,"Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,HTAN, +Biospecimen Site of Origin,"The text term used to describe the anatomic site of origin, of the patient's malignant disease.","Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,HTAN, +Biospecimen Timepoint Type,"Label to identify an event associated with the collection of the biospecimen (e.g. Baseline, End of Treatment, Overall survival, Final). Use Biospecimen Timepoint Offset to indicate the number of post-event days that elapsed before the biospecimen was collected. NO PHI/PII INFORMATION IS ALLOWED.",,,FALSE,,,,HTAN,str +Biospecimen Collection Site,The health care site at which the biospecimen sample was collected.,,,FALSE,,,,MC2/STE,str +Biospecimen Therapeutic Agent,Text identification of the individual agent(s) used as part of a treatment regimen.,"10-Deacetyltaxol, 11C Topotecan, 11D10 AluGel Anti-Idiotype Monoclonal Antibody, 12-Allyldeoxoartemisinin, 13-Deoxydoxorubicin, 14C BMS-275183, 17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521, 2-Deoxy-D-glucose, 2-Ethylhydrazide, 2-Fluoroadenine, 2-Fluorofucose-containing SGN-2FF, 2-Hydroxyestradiol, 2-Hydroxyestrone, 2-Hydroxyflutamide Depot, 2-Hydroxyoleic Acid, 2-Methoxyestradiol, 2-Methoxyestradiol Nanocrystal Colloidal Dispersion, 2-Methoxyestrone, 2-O; 3-O Desulfated Heparin, 2;6-Diaminopurine, 2;6-Dimethoxyquinone, 2'-F-ara-deoxyuridine, 3'-C-ethynylcytidine, 3'-dA Phosphoramidate NUC-7738, 4-Nitroestrone 3-Methyl Ether, 4-Thio-2-deoxycytidine, 4'-Iodo-4'-Deoxydoxorubicin, 5-Aza-4'-thio-2'-deoxycytidine, 5-Fluoro-2-Deoxycytidine, 6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158, 7-Cyanoquinocarcinol, 7-Ethyl-10-Hydroxycamptothecin, 7-Hydroxystaurosporine, 8-Azaguanine, 9-Ethyl 6-Mercaptopurine, 9H-Purine-6Thio-98D, A2A Receptor Antagonist EOS100850, Abagovomab, Abarelix, Abemaciclib, Abemaciclib Mesylate, Abexinostat, Abexinostat Tosylate, Abiraterone, Abiraterone Acetate, Abituzumab, Acai Berry Juice, Acalabrutinib, Acalisib, Aceglatone, Acetylcysteine, Acitretin, Acivicin, Aclacinomycin B, Aclarubicin, Acodazole, Acodazole Hydrochloride, Acolbifene Hydrochloride, Acridine, Acridine Carboxamide, Acronine, Actinium Ac 225 Lintuzumab, Actinium Ac 225-FPI-1434, Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591, Actinomycin C2, Actinomycin C3, Actinomycin F1, Activin Type 2B Receptor Fc Fusion Protein STM 434, Acyclic Nucleoside Phosphonate Prodrug ABI-1968, Ad-RTS-hIL-12, Adagloxad Simolenin, Adavosertib, Adecatumumab, Adenosine A2A Receptor Antagonist AZD4635, Adenosine A2A Receptor Antagonist CS3005, Adenosine A2A Receptor Antagonist NIR178, Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999, Adenosine A2A/A2B Receptor Antagonist AB928, Adenosine A2B Receptor Antagonist PBF-1129, Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201, Adenoviral Brachyury Vaccine ETBX-051, Adenoviral Cancer Vaccine PF-06936308, Adenoviral MUC1 Vaccine ETBX-061, Adenoviral PSA Vaccine ETBX-071, Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001, Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP, Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901, Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE, Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918, Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931, Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3, Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001, Aderbasib, ADH-1, AE37 Peptide/GM-CSF Vaccine, AEE788, Aerosol Gemcitabine, Aerosolized Aldesleukin, Aerosolized Liposomal Rubitecan, Afatinib, Afatinib Dimaleate, Afimoxifene, Afuresertib, Agatolimod Sodium, Agerafenib, Aglatimagene Besadenovec, Agonistic Anti-CD40 Monoclonal Antibody ADC-1013, Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949, Agonistic Anti-OX40 Monoclonal Antibody MEDI6469, AKR1C3-activated Prodrug OBI-3424, AKT 1/2 Inhibitor BAY1125976, AKT Inhibitor ARQ 092, Akt Inhibitor LY2780301, Akt Inhibitor MK2206, Akt Inhibitor SR13668, Akt/ERK Inhibitor ONC201, Alacizumab Pegol, Alanosine, Albumin-binding Cisplatin Prodrug BTP-114, Aldesleukin, Aldoxorubicin, Alectinib, Alefacept, Alemtuzumab, Alestramustine, Alflutinib Mesylate, Algenpantucel-L, Alisertib, Alitretinoin, ALK Inhibitor, ALK Inhibitor ASP3026, ALK Inhibitor PLB 1003, ALK Inhibitor RO5424802, ALK Inhibitor TAE684, ALK Inhibitor WX-0593, ALK-2 Inhibitor TP-0184, ALK-FAK Inhibitor CEP-37440, ALK/c-Met Inhibitor TQ-B3139, ALK/FAK/Pyk2 Inhibitor CT-707, ALK/ROS1/Met Inhibitor TQ-B3101, ALK/TRK Inhibitor TSR-011, Alkotinib, Allodepleted T Cell Immunotherapeutic ATIR101, Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715, Allogeneic Anti-BCMA-CAR T-cells PBCAR269A, Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells, Allogeneic Anti-CD19 CAR T-cells ALLO-501A, Allogeneic Anti-CD19 Universal CAR-T Cells CTA101, Allogeneic Anti-CD19-CAR T-cells PBCAR0191, Allogeneic Anti-CD20 CAR T-cells LUCAR-20S, Allogeneic Anti-CD20-CAR T-cells PBCAR20A, Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22, Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100, Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001, Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001, Allogeneic Cellular Vaccine 1650-G, Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120, Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130, Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A, Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM, Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine, Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo, Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2, Allogeneic Irradiated Melanoma Cell Vaccine CSF470, Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307, Allogeneic Melanoma Vaccine AGI-101H, Allogeneic Natural Killer Cell Line MG4101, Allogeneic Natural Killer Cell Line NK-92, Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01, Allogeneic Renal Cell Carcinoma Vaccine MGN1601, Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19, Allosteric ErbB Inhibitor BDTX-189, Allovectin-7, Almurtide, Alobresib, Alofanib, Alpelisib, Alpha Galactosylceramide, Alpha V Beta 1 Inhibitor ATN-161, Alpha V Beta 8 Antagonist PF-06940434, alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801, Alpha-Gal AGI-134, Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H, Alpha-Thioguanine Deoxyriboside, Alpha-tocopheryloxyacetic Acid, Alsevalimab, Altiratinib, Altretamine, Alvespimycin, Alvespimycin Hydrochloride, Alvocidib, Alvocidib Hydrochloride, Alvocidib Prodrug TP-1287, Amatuximab, Ambamustine, Ambazone, Amblyomin-X, Amcasertib, Ametantrone, Amifostine, Amino Acid Injection, Aminocamptothecin, Aminocamptothecin Colloidal Dispersion, Aminoflavone Prodrug AFP464, Aminopterin, Aminopterin Sodium, Amivantamab, Amolimogene Bepiplasmid, Amonafide L-Malate, Amrubicin, Amrubicin Hydrochloride, Amsacrine, Amsacrine Lactate, Amsilarotene, Amustaline, Amustaline Dihydrochloride, Amuvatinib, Amuvatinib Hydrochloride, Anakinra, Anastrozole, Anaxirone, Ancitabine, Ancitabine Hydrochloride, Andecaliximab, Androgen Antagonist APC-100, Androgen Receptor Antagonist BAY 1161116, Androgen Receptor Antagonist SHR3680, Androgen Receptor Antagonist TAS3681, Androgen Receptor Antagonist TRC253, Androgen Receptor Antisense Oligonucleotide AZD5312, Androgen Receptor Antisense Oligonucleotide EZN-4176, Androgen Receptor Degrader ARV-110, Androgen Receptor Degrader CC-94676, Androgen Receptor Downregulator AZD3514, Androgen Receptor Inhibitor EPI-7386, Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118, Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10, Andrographolide, Androstane Steroid HE3235, Anetumab Ravtansine, Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241, Angiogenesis Inhibitor GT-111, Angiogenesis Inhibitor JI-101, Angiogenesis/Heparanase Inhibitor PG545, Angiopoietin-2-specific Fusion Protein PF-04856884, Anhydrous Enol-oxaloacetate, Anhydrovinblastine, Aniline Mustard, Anlotinib Hydrochloride, Annamycin, Annamycin Liposomal, Annonaceous Acetogenins, Ansamitomicin P-3, Anthramycin, Anthrapyrazole, Anti c-KIT Antibody-drug Conjugate LOP628, Anti-5T4 Antibody-drug Conjugate ASN004, Anti-5T4 Antibody-Drug Conjugate PF-06263507, Anti-5T4 Antibody-drug Conjugate SYD1875, Anti-A33 Monoclonal Antibody KRN330, Anti-A5B1 Integrin Monoclonal Antibody PF-04605412, Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087, Anti-AG7 Antibody Drug Conjugate AbGn-107, Anti-AGS-16 Monoclonal Antibody AGS-16M18, Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME, Anti-AGS-8 Monoclonal Antibody AGS-8M4, Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B, Anti-alpha5beta1 Integrin Antibody MINT1526A, Anti-ANG2 Monoclonal Antibody MEDI-3617, Anti-angiopoietin Monoclonal Antibody AMG 780, Anti-APRIL Monoclonal Antibody BION-1301, Anti-AXL Fusion Protein AVB-S6-500, Anti-AXL/PBD Antibody-drug Conjugate ADCT-601, Anti-B7-H3 Antibody DS-5573a, Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a, Anti-B7-H4 Monoclonal Antibody FPA150, Anti-B7H3 Antibody-drug Conjugate MGC018, Anti-BCMA Antibody SEA-BCMA, Anti-BCMA Antibody-drug Conjugate AMG 224, Anti-BCMA Antibody-drug Conjugate CC-99712, Anti-BCMA Antibody-drug Conjugate GSK2857916, Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA, Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459, Anti-BCMA/CD3 BiTE Antibody AMG 420, Anti-BCMA/CD3 BiTE Antibody AMG 701, Anti-BCMA/CD3 BiTE Antibody REGN5458, Anti-BCMA/PBD ADC MEDI2228, Anti-BTLA Monoclonal Antibody TAB004, Anti-BTN3A Agonistic Monoclonal Antibody ICT01, Anti-c-fms Monoclonal Antibody AMG 820, Anti-c-KIT Monoclonal Antibody CDX 0158, Anti-c-Met Antibody-drug Conjugate HTI-1066, Anti-c-Met Antibody-drug Conjugate TR1801, Anti-c-Met Monoclonal Antibody ABT-700, Anti-c-Met Monoclonal Antibody ARGX-111, Anti-c-Met Monoclonal Antibody HLX55, Anti-c-MET Monoclonal Antibody LY2875358, Anti-C-met Monoclonal Antibody SAIT301, Anti-C4.4a Antibody-Drug Conjugate BAY1129980, Anti-C5aR Monoclonal Antibody IPH5401, Anti-CA19-9 Monoclonal Antibody 5B1, Anti-CA6-DM4 Immunoconjugate SAR566658, Anti-CCR7 Antibody-drug Conjugate JBH492, Anti-CD117 Monoclonal Antibody JSP191, Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1, Anti-CD123 ADC IMGN632, Anti-CD123 Monoclonal Antibody CSL360, Anti-CD123 Monoclonal Antibody KHK2823, Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404, Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A, Anti-CD123/CD3 Bispecific Antibody APVO436, Anti-CD123/CD3 Bispecific Antibody JNJ-63709178, Anti-CD123/CD3 BiTE Antibody SAR440234, Anti-CD137 Agonistic Monoclonal Antibody ADG106, Anti-CD137 Agonistic Monoclonal Antibody AGEN2373, Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017, Anti-CD137 Agonistic Monoclonal Antibody CTX-471, Anti-CD137 Agonistic Monoclonal Antibody LVGN6051, Anti-CD157 Monoclonal Antibody MEN1112, Anti-CD166 Probody-drug Conjugate CX-2009, Anti-CD19 Antibody-drug Conjugate SGN-CD19B, Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003, Anti-CD19 iCAR NK Cells, Anti-CD19 Monoclonal Antibody DI-B4, Anti-CD19 Monoclonal Antibody MDX-1342, Anti-CD19 Monoclonal Antibody MEDI-551, Anti-CD19 Monoclonal Antibody XmAb5574, Anti-CD19-DM4 Immunoconjugate SAR3419, Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL, Anti-CD19/CD22 CAR NK Cells, Anti-CD19/CD3 BiTE Antibody AMG 562, Anti-CD19/CD3 Tetravalent Antibody AFM11, Anti-CD20 Monoclonal Antibody B001, Anti-CD20 Monoclonal Antibody BAT4306F, Anti-CD20 Monoclonal Antibody MIL62, Anti-CD20 Monoclonal Antibody PRO131921, Anti-CD20 Monoclonal Antibody SCT400, Anti-CD20 Monoclonal Antibody TL011, Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002, Anti-CD20-engineered Toxin Body MT-3724, Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323, Anti-CD20/CD3 Monoclonal Antibody REGN1979, Anti-CD20/CD3 Monoclonal Antibody XmAb13676, Anti-CD205 Antibody-drug Conjugate OBT076, Anti-CD22 ADC TRPH-222, Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S, Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A, Anti-CD25 Monoclonal Antibody RO7296682, Anti-CD25-PBD Antibody-drug Conjugate ADCT-301, Anti-CD26 Monoclonal Antibody YS110, Anti-CD27 Agonistic Monoclonal Antibody MK-5890, Anti-CD27L Antibody-Drug Conjugate AMG 172, Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1), Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135, Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05, Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564, Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119, Anti-CD3/CD20 Bispecific Antibody GEN3013, Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424, Anti-CD3/CD7-Ricin Toxin A Immunotoxin, Anti-CD30 Monoclonal Antibody MDX-1401, Anti-CD30 Monoclonal Antibody XmAb2513, Anti-CD30/CD16A Monoclonal Antibody AFM13, Anti-CD30/DM1 Antibody-drug Conjugate F0002, Anti-CD32B Monoclonal Antibody BI-1206, Anti-CD33 Antibody-drug Conjugate IMGN779, Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564, Anti-CD33 Monoclonal Antibody BI 836858, Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633, Anti-CD33/CD3 Bispecific Antibody GEM 333, Anti-CD33/CD3 Bispecific Antibody JNJ-67571244, Anti-CD33/CD3 BiTE Antibody AMG 330, Anti-CD33/CD3 BiTE Antibody AMG 673, Anti-CD352 Antibody-drug Conjugate SGN-CD352A, Anti-CD37 Antibody-Drug Conjugate IMGN529, Anti-CD37 Bispecific Monoclonal Antibody GEN3009, Anti-CD37 MMAE Antibody-drug Conjugate AGS67E, Anti-CD37 Monoclonal Antibody BI 836826, Anti-CD38 Antibody-drug Conjugate STI-6129, Anti-CD38 Monoclonal Antibody MOR03087, Anti-CD38 Monoclonal Antibody SAR442085, Anti-CD38 Monoclonal Antibody TAK-079, Anti-CD38-targeted IgG4-attenuated IFNa TAK-573, Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257, Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342, Anti-CD39 Monoclonal Antibody SRF617, Anti-CD39 Monoclonal Antibody TTX-030, Anti-CD40 Agonist Monoclonal Antibody ABBV-927, Anti-CD40 Agonist Monoclonal Antibody CDX-1140, Anti-CD40 Monoclonal Antibody Chi Lob 7/4, Anti-CD40 Monoclonal Antibody SEA-CD40, Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042, Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428, Anti-CD40L Fc-Fusion Protein BMS-986004, Anti-CD44 Monoclonal Antibody RO5429083, Anti-CD45 Monoclonal Antibody AHN-12, Anti-CD46 Antibody-drug Conjugate FOR46, Anti-CD47 ADC SGN-CD47M, Anti-CD47 Monoclonal Antibody AO-176, Anti-CD47 Monoclonal Antibody CC-90002, Anti-CD47 Monoclonal Antibody Hu5F9-G4, Anti-CD47 Monoclonal Antibody IBI188, Anti-CD47 Monoclonal Antibody IMC-002, Anti-CD47 Monoclonal Antibody SHR-1603, Anti-CD47 Monoclonal Antibody SRF231, Anti-CD47 Monoclonal Antibody TJC4, Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801, Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A, Anti-CD52 Monoclonal Antibody ALLO-647, Anti-CD70 Antibody-Drug Conjugate MDX-1203, Anti-CD70 Antibody-drug Conjugate SGN-CD70A, Anti-CD70 CAR-expressing T Lymphocytes, Anti-CD70 Monoclonal Antibody MDX-1411, Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029, Anti-CD73 Monoclonal Antibody BMS-986179, Anti-CD73 Monoclonal Antibody CPI-006, Anti-CD73 Monoclonal Antibody NZV930, Anti-CD73 Monoclonal Antibody TJ4309, Anti-CD74 Antibody-drug Conjugate STRO-001, Anti-CD98 Monoclonal Antibody IGN523, Anti-CDH6 Antibody-drug Conjugate HKT288, Anti-CEA BiTE Monoclonal Antibody AMG211, Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody, Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2, Anti-CEACAM1 Monoclonal Antibody CM-24, Anti-CEACAM5 Antibody-Drug Conjugate SAR408701, Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47, Anti-CEACAM6 Antibody BAY1834942, Anti-claudin18.2 Monoclonal Antibody AB011, Anti-Claudin18.2 Monoclonal Antibody TST001, Anti-CLDN6 Monoclonal Antibody ASP1650, Anti-CLEC12A/CD3 Bispecific Antibody MCLA117, Anti-CLEVER-1 Monoclonal Antibody FP-1305, Anti-CSF1 Monoclonal Antibody PD-0360324, Anti-CSF1R Monoclonal Antibody IMC-CS4, Anti-CSF1R Monoclonal Antibody SNDX-6352, Anti-CTGF Monoclonal Antibody FG-3019, Anti-CTLA-4 Monoclonal Antibody ADG116, Anti-CTLA-4 Monoclonal Antibody ADU-1604, Anti-CTLA-4 Monoclonal Antibody AGEN1181, Anti-CTLA-4 Monoclonal Antibody BCD-145, Anti-CTLA-4 Monoclonal Antibody HBM4003, Anti-CTLA-4 Monoclonal Antibody MK-1308, Anti-CTLA-4 Monoclonal Antibody ONC-392, Anti-CTLA-4 Monoclonal Antibody REGN4659, Anti-CTLA-4 Probody BMS-986288, Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217, Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841, Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015, Anti-CTLA4 Antibody Fc Fusion Protein KN044, Anti-CTLA4 Monoclonal Antibody BMS-986218, Anti-CXCR4 Monoclonal Antibody PF-06747143, Anti-Denatured Collagen Monoclonal Antibody TRC093, Anti-DKK-1 Monoclonal Antibody LY2812176, Anti-DKK1 Monoclonal Antibody BHQ880, Anti-DLL3/CD3 BiTE Antibody AMG 757, Anti-DLL4 Monoclonal Antibody MEDI0639, Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83, Anti-DR5 Agonist Monoclonal Antibody TRA-8, Anti-DR5 Agonistic Antibody DS-8273a, Anti-DR5 Agonistic Monoclonal Antibody INBRX-109, Anti-EGFR Monoclonal Antibody CPGJ 602, Anti-EGFR Monoclonal Antibody EMD 55900, Anti-EGFR Monoclonal Antibody GC1118, Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX, Anti-EGFR Monoclonal Antibody HLX-07, Anti-EGFR Monoclonal Antibody Mixture MM-151, Anti-EGFR Monoclonal Antibody RO5083945, Anti-EGFR Monoclonal Antibody SCT200, Anti-EGFR Monoclonal Antibody SYN004, Anti-EGFR TAP Antibody-drug Conjugate IMGN289, Anti-EGFR/c-Met Bispecific Antibody EMB-01, Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372, Anti-EGFR/CD16A Bispecific Antibody AFM24, Anti-EGFR/DM1 Antibody-drug Conjugate AVID100, Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013, Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321, Anti-EGFRvIII Antibody Drug Conjugate AMG 595, Anti-EGFRvIII Immunotoxin MR1-1, Anti-EGFRvIII/CD3 BiTE Antibody AMG 596, Anti-EGP-2 Immunotoxin MOC31-PE, Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F, Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F, Anti-Ep-CAM Monoclonal Antibody ING-1, Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310, Anti-EphA2 Monoclonal Antibody DS-8895a, Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547, Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111, Anti-ErbB3 Antibody ISU104, Anti-ErbB3 Monoclonal Antibody AV-203, Anti-ErbB3 Monoclonal Antibody CDX-3379, Anti-ErbB3 Monoclonal Antibody REGN1400, Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141, Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A, Anti-FAP/Interleukin-2 Fusion Protein RO6874281, Anti-FCRH5/CD3 BiTE Antibody BFCR4350A, Anti-FGFR2 Antibody BAY1179470, Anti-FGFR3 Antibody-drug Conjugate LY3076226, Anti-FGFR4 Monoclonal Antibody U3-1784, Anti-FLT3 Antibody-drug Conjugate AGS62P1, Anti-FLT3 Monoclonal Antibody 4G8-SDIEM, Anti-FLT3 Monoclonal Antibody IMC-EB10, Anti-FLT3/CD3 BiTE Antibody AMG 427, Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002, Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202, Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012, Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962, Anti-GARP Monoclonal Antibody ABBV-151, Anti-GCC Antibody-Drug Conjugate MLN0264, Anti-GCC Antibody-Drug Conjugate TAK-164, Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody, Anti-GD2 Monoclonal Antibody hu14.18K322A, Anti-GD2 Monoclonal Antibody MORAb-028, Anti-GD3 Antibody-drug Conjugate PF-06688992, Anti-GITR Agonistic Monoclonal Antibody ASP1951, Anti-GITR Agonistic Monoclonal Antibody BMS-986156, Anti-GITR Agonistic Monoclonal Antibody INCAGN01876, Anti-GITR Monoclonal Antibody GWN 323, Anti-GITR Monoclonal Antibody MK-4166, Anti-Globo H Monoclonal Antibody OBI-888, Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999, Anti-Glypican 3/CD3 Bispecific Antibody ERY974, Anti-GnRH Vaccine PEP223, Anti-gpA33/CD3 Monoclonal Antibody MGD007, Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a, Anti-gremlin-1 Monoclonal Antibody UCB6114, Anti-GRP78 Monoclonal Antibody PAT-SM6, Anti-HA Epitope Monoclonal Antibody MEDI8852, Anti-HB-EGF Monoclonal Antibody KHK2866, Anti-HBEGF Monoclonal Antibody U3-1565, Anti-hepcidin Monoclonal Antibody LY2787106, Anti-HER-2 Bispecific Antibody KN026, Anti-HER2 ADC DS-8201a, Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702, Anti-HER2 Antibody-drug Conjugate A166, Anti-HER2 Antibody-drug Conjugate ARX788, Anti-HER2 Antibody-drug Conjugate BAT8001, Anti-HER2 Antibody-drug Conjugate DP303c, Anti-HER2 Antibody-drug Conjugate MEDI4276, Anti-HER2 Antibody-drug Conjugate RC48, Anti-HER2 Bi-specific Monoclonal Antibody ZW25, Anti-HER2 Bispecific Antibody-drug Conjugate ZW49, Anti-HER2 Immune Stimulator-antibody Conjugate NJH395, Anti-HER2 Monoclonal Antibody B002, Anti-HER2 Monoclonal Antibody CT-P6, Anti-HER2 Monoclonal Antibody HLX22, Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343, Anti-HER2-DM1 ADC B003, Anti-HER2-DM1 Antibody-drug Conjugate GQ1001, Anti-HER2-vc0101 ADC PF-06804103, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302, Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128, Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522, Anti-HER2/MMAE Antibody-drug Conjugate MRG002, Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A, Anti-HER3 Antibody-drug Conjugate U3 1402, Anti-HER3 Monoclonal Antibody GSK2849330, Anti-HGF Monoclonal Antibody TAK-701, Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968, Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1, Anti-HLA-DR Monoclonal Antibody IMMU-114, Anti-HLA-G Antibody TTX-080, Anti-human GITR Monoclonal Antibody AMG 228, Anti-human GITR Monoclonal Antibody TRX518, Anti-ICAM-1 Monoclonal Antibody BI-505, Anti-ICOS Agonist Antibody GSK3359609, Anti-ICOS Agonist Monoclonal Antibody BMS-986226, Anti-ICOS Monoclonal Antibody KY1044, Anti-ICOS Monoclonal Antibody MEDI-570, Anti-IGF-1R Monoclonal Antibody AVE1642, Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022, Anti-IL-1 alpha Monoclonal Antibody MABp1, Anti-IL-13 Humanized Monoclonal Antibody TNX-650, Anti-IL-15 Monoclonal Antibody AMG 714, Anti-IL-8 Monoclonal Antibody BMS-986253, Anti-IL-8 Monoclonal Antibody HuMax-IL8, Anti-ILDR2 Monoclonal Antibody BAY 1905254, Anti-ILT4 Monoclonal Antibody MK-4830, Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A, Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388, Anti-IRF4 Antisense Oligonucleotide ION251, Anti-KIR Monoclonal Antibody IPH 2101, Anti-KSP/Anti-VEGF siRNAs ALN-VSP02, Anti-LAG-3 Monoclonal Antibody IBI-110, Anti-LAG-3 Monoclonal Antibody INCAGN02385, Anti-LAG-3 Monoclonal Antibody LAG525, Anti-LAG-3 Monoclonal Antibody REGN3767, Anti-LAG-3/PD-L1 Bispecific Antibody FS118, Anti-LAG3 Monoclonal Antibody BI 754111, Anti-LAG3 Monoclonal Antibody MK-4280, Anti-LAG3 Monoclonal Antibody TSR-033, Anti-LAMP1 Antibody-drug Conjugate SAR428926, Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181, Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102, Anti-LGR5 Monoclonal Antibody BNC101, Anti-LIF Monoclonal Antibody MSC-1, Anti-LILRB4 Monoclonal Antibody IO-202, Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A, Anti-Ly6E Antibody-Drug Conjugate RG 7841, Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C, Anti-Melanin Monoclonal Antibody PTI-6D2, Anti-mesothelin Antibody-drug Conjugate BMS-986148, Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100, Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A, Anti-mesothelin/MMAE Antibody-drug Conjugate RC88, Anti-Met Monoclonal Antibody Mixture Sym015, Anti-Met/EGFR Monoclonal Antibody LY3164530, Anti-MMP-9 Monoclonal Antibody GS-5745, Anti-MUC1 Monoclonal Antibody BTH1704, Anti-MUC16/CD3 Bispecific Antibody REGN4018, Anti-MUC16/CD3 BiTE Antibody REGN4018, Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A, Anti-MUC17/CD3 BiTE Antibody AMG 199, Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062, Anti-myostatin Monoclonal Antibody LY2495655, Anti-NaPi2b Antibody-drug Conjugate XMT-1592, Anti-NaPi2b Monoclonal Antibody XMT-1535, Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E, Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A, Anti-nf-P2X7 Antibody Ointment BIL-010t, Anti-NRP1 Antibody ASP1948, Anti-Nucleolin Aptamer AS1411, Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A, Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso, Anti-OFA Immunotherapeutic BB-MPI-03, Anti-OX40 Agonist Monoclonal Antibody ABBV-368, Anti-OX40 Agonist Monoclonal Antibody BGB-A445, Anti-OX40 Agonist Monoclonal Antibody PF-04518600, Anti-OX40 Antibody BMS 986178, Anti-OX40 Hexavalent Agonist Antibody INBRX-106, Anti-OX40 Monoclonal Antibody GSK3174998, Anti-OX40 Monoclonal Antibody IBI101, Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256, Anti-PD-1 Checkpoint Inhibitor PF-06801591, Anti-PD-1 Fusion Protein AMP-224, Anti-PD-1 Monoclonal Antibody 609A, Anti-PD-1 Monoclonal Antibody AK105, Anti-PD-1 Monoclonal Antibody AMG 404, Anti-PD-1 Monoclonal Antibody BAT1306, Anti-PD-1 Monoclonal Antibody BCD-100, Anti-PD-1 Monoclonal Antibody BI 754091, Anti-PD-1 Monoclonal Antibody CS1003, Anti-PD-1 Monoclonal Antibody F520, Anti-PD-1 Monoclonal Antibody GLS-010, Anti-PD-1 Monoclonal Antibody HLX10, Anti-PD-1 Monoclonal Antibody HX008, Anti-PD-1 Monoclonal Antibody JTX-4014, Anti-PD-1 Monoclonal Antibody LZM009, Anti-PD-1 Monoclonal Antibody MEDI0680, Anti-PD-1 Monoclonal Antibody MGA012, Anti-PD-1 Monoclonal Antibody SCT-I10A, Anti-PD-1 Monoclonal Antibody Sym021, Anti-PD-1 Monoclonal Antibody TSR-042, Anti-PD-1/Anti-CTLA4 DART Protein MGD019, Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315, Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669, Anti-PD-1/Anti-LAG-3 DART Protein MGD013, Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318, Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172, Anti-PD-1/CD47 Infusion Protein HX009, Anti-PD-1/CTLA-4 Bispecific Antibody AK104, Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752, Anti-PD-1/TIM-3 Bispecific Antibody RO7121661, Anti-PD-1/VEGF Bispecific Antibody AK112, Anti-PD-L1 Monoclonal Antibody A167, Anti-PD-L1 Monoclonal Antibody BCD-135, Anti-PD-L1 Monoclonal Antibody BGB-A333, Anti-PD-L1 Monoclonal Antibody CBT-502, Anti-PD-L1 Monoclonal Antibody CK-301, Anti-PD-L1 Monoclonal Antibody CS1001, Anti-PD-L1 Monoclonal Antibody FAZ053, Anti-PD-L1 Monoclonal Antibody GR1405, Anti-PD-L1 Monoclonal Antibody HLX20, Anti-PD-L1 Monoclonal Antibody IMC-001, Anti-PD-L1 Monoclonal Antibody LY3300054, Anti-PD-L1 Monoclonal Antibody MDX-1105, Anti-PD-L1 Monoclonal Antibody MSB2311, Anti-PD-L1 Monoclonal Antibody RC98, Anti-PD-L1 Monoclonal Antibody SHR-1316, Anti-PD-L1 Monoclonal Antibody TG-1501, Anti-PD-L1 Monoclonal Antibody ZKAB001, Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105, Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046, Anti-PD-L1/CD137 Bispecific Antibody MCLA-145, Anti-PD-L1/IL-15 Fusion Protein KD033, Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244, Anti-PD1 Monoclonal Antibody AGEN2034, Anti-PD1/CTLA4 Bispecific Antibody XmAb20717, Anti-PGF Monoclonal Antibody RO5323441, Anti-PKN3 siRNA Atu027, Anti-PLGF Monoclonal Antibody TB-403, Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4, Anti-PRAME Immunotherapeutic GSK2302032A, Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C, Anti-PRL-3 Monoclonal Antibody PRL3-zumab, Anti-prolactin Receptor Antibody LFA102, Anti-PSCA Monoclonal Antibody AGS-1C4D4, Anti-PSMA Monoclonal Antibody MDX1201-A488, Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704, Anti-PSMA Monoclonal Antibody-MMAE Conjugate, Anti-PSMA/CD28 Bispecific Antibody REGN5678, Anti-PSMA/CD3 Bispecific Antibody CCW702, Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081, Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414, Anti-PSMA/PBD ADC MEDI3726, Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020, Anti-PVRIG Monoclonal Antibody COM701, Anti-RANKL Monoclonal Antibody GB-223, Anti-RANKL Monoclonal Antibody JMT103, Anti-Ribonucleoprotein Antibody ATRC-101, Anti-ROR1 ADC VLS-101, Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002, Anti-S15 Monoclonal Antibody NC318, Anti-sCLU Monoclonal Antibody AB-16B5, Anti-SIRPa Monoclonal Antibody CC-95251, Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E, Anti-TAG-72 Monoclonal Antibody scFV CC-49/218, Anti-TF Monoclonal Antibody ALT-836, Anti-TGF-beta Monoclonal Antibody NIS793, Anti-TGF-beta Monoclonal Antibody SAR-439459, Anti-TGF-beta RII Monoclonal Antibody IMC-TR1, Anti-TIGIT Monoclonal Antibody AB154, Anti-TIGIT Monoclonal Antibody BGB-A1217, Anti-TIGIT Monoclonal Antibody BMS-986207, Anti-TIGIT Monoclonal Antibody COM902, Anti-TIGIT Monoclonal Antibody OMP-313M32, Anti-TIGIT Monoclonal Antibody SGN-TGT, Anti-TIM-3 Antibody BMS-986258, Anti-TIM-3 Monoclonal Antibody BGB-A425, Anti-TIM-3 Monoclonal Antibody INCAGN02390, Anti-TIM-3 Monoclonal Antibody MBG453, Anti-TIM-3 Monoclonal Antibody Sym023, Anti-TIM-3 Monoclonal Antibody TSR-022, Anti-TIM3 Monoclonal Antibody LY3321367, Anti-TIM3 Monoclonal Antibody SHR-1702, Anti-Tissue Factor Monoclonal Antibody MORAb-066, Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711, Anti-TROP2 Antibody-drug Conjugate BAT8003, Anti-TROP2 Antibody-drug Conjugate SKB264, Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a, Anti-TWEAK Monoclonal Antibody RG7212, Anti-VEGF Anticalin PRS-050-PEG40, Anti-VEGF Monoclonal Antibody hPV19, Anti-VEGF/ANG2 Nanobody BI 836880, Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T, Anti-VEGFC Monoclonal Antibody VGX-100, Anti-VEGFR2 Monoclonal Antibody HLX06, Anti-VEGFR2 Monoclonal Antibody MSB0254, Anti-VEGFR3 Monoclonal Antibody IMC-3C5, Anti-VISTA Monoclonal Antibody JNJ 61610588, Antiangiogenic Drug Combination TL-118, Antibody-drug Conjugate ABBV-011, Antibody-drug Conjugate ABBV-085, Antibody-drug Conjugate ABBV-155, Antibody-drug Conjugate ABBV-176, Antibody-drug Conjugate ABBV-838, Antibody-drug Conjugate ADC XMT-1536, Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014, Antibody-Drug Conjugate DFRF4539A, Antibody-drug Conjugate MEDI7247, Antibody-drug Conjugate PF-06647263, Antibody-drug Conjugate PF-06664178, Antibody-drug Conjugate SC-002, Antibody-drug Conjugate SC-003, Antibody-drug Conjugate SC-004, Antibody-drug Conjugate SC-005, Antibody-drug Conjugate SC-006, Antibody-drug Conjugate SC-007, Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008, Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV, Antimetabolite FF-10502, Antineoplastic Agent Combination SM-88, Antineoplastic Vaccine, Antineoplastic Vaccine GV-1301, Antineoplaston A10, Antineoplaston AS2-1, Antisense Oligonucleotide GTI-2040, Antisense Oligonucleotide QR-313, Antitumor B Key Active Component-alpha, Antrodia cinnamomea Supplement, Antroquinonol Capsule, Apalutamide, Apatorsen, Apaziquone, APC8015F, APE1/Ref-1 Redox Inhibitor APX3330, Aphidicoline Glycinate, Apilimod Dimesylate Capsule, Apitolisib, Apolizumab, Apomab, Apomine, Apoptosis Inducer BZL101, Apoptosis Inducer GCS-100, Apoptosis Inducer MPC-2130, Apricoxib, Aprinocarsen, Aprutumab, Aprutumab Ixadotin, AR Antagonist BMS-641988, Arabinoxylan Compound MGN3, Aranose, ARC Fusion Protein SL-279252, Archexin, Arcitumomab, Arfolitixorin, Arginase Inhibitor INCB001158, Arginine Butyrate, Arnebia Indigo Jade Pearl Topical Cream, Arsenic Trioxide, Arsenic Trioxide Capsule Formulation ORH 2014, Artemether Sublingual Spray, Artemisinin Dimer, Artesunate, Arugula Seed Powder, Aryl Hydrocarbon Receptor Antagonist BAY2416964, Aryl Hydrocarbon Receptor Inhibitor IK-175, Asaley, Asciminib, Ascrinvacumab, Ashwagandha Root Powder Extract, ASP4132, Aspacytarabine, Asparaginase, Asparaginase Erwinia chrysanthemi, Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10, Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10, Astuprotimut-R, Asulacrine, Asulacrine Isethionate, Asunercept, At 211 Monoclonal Antibody 81C6, Atamestane, Atezolizumab, Atiprimod, Atiprimod Dihydrochloride, Atiprimod Dimaleate, ATM Inhibitor M 3541, ATM Kinase Inhibitor AZD0156, ATM Kinase Inhibitor AZD1390, Atorvastatin Calcium, Atorvastatin Sodium, ATR Inhibitor RP-3500, ATR Kinase Inhibitor BAY1895344, ATR Kinase Inhibitor M1774, ATR Kinase Inhibitor M6620, ATR Kinase Inhibitor VX-803, Atrasentan Hydrochloride, Attenuated Listeria monocytogenes CRS-100, Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001, Attenuated Measles Virus Encoding SCD Transgene TMV-018, Atuveciclib, Audencel, Auranofin, Aurora A Kinase Inhibitor LY3295668, Aurora A Kinase Inhibitor LY3295668 Erbumine, Aurora A Kinase Inhibitor MK5108, Aurora A Kinase Inhibitor TAS-119, Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076, Aurora B Serine/Threonine Kinase Inhibitor TAK-901, Aurora B/C Kinase Inhibitor GSK1070916A, Aurora kinase A/B inhibitor TT-00420, Aurora Kinase Inhibitor AMG 900, Aurora Kinase Inhibitor BI 811283, Aurora Kinase Inhibitor MLN8054, Aurora Kinase Inhibitor PF-03814735, Aurora Kinase Inhibitor SNS-314, Aurora Kinase Inhibitor TTP607, Aurora Kinase/VEGFR2 Inhibitor CYC116, Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707, Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055, Autologous Anti-BCMA CAR T-cells PHE885, Autologous Anti-BCMA CAR-transduced T-cells KITE-585, Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11, Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053, Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143, Autologous Anti-CD123 CAR-T Cells, Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx, Autologous Anti-CD19 CAR T-cells IM19, Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19, Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19, Autologous Anti-CD19 CAR-CD28 T-cells ET019002, Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01, Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19, Autologous Anti-CD19 T-cell Receptor T cells ET190L1, Autologous Anti-CD19 TAC-T cells TAC01-CD19, Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells, Autologous Anti-CD19/CD22 CAR T-cells AUTO3, Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014, Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells, Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1, Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s, Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes, Autologous Anti-FLT3 CAR T Cells AMG 553, Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202, Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1, Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100, Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes, Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794, Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes, Autologous Anti-PSMA CAR-T Cells P-PSMA-101, Autologous AXL-targeted CAR T-cells CCT301-38, Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B, Autologous BCMA-targeted CAR T Cells CC-98633, Autologous BCMA-targeted CAR T Cells LCAR-B4822M, Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528, Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F, Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022, Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006, Autologous CD123-4SCAR-expressing T-cells 4SCAR123, Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1, Autologous CD19-targeted CAR T Cells CC-97540, Autologous CD19-targeted CAR T Cells JWCAR029, Autologous CD19-targeted CAR-T Cells GC007F, Autologous CD19/PD-1 Bispecific CAR-T Cells, Autologous CD20-4SCAR-expressing T-cells 4SCAR20, Autologous CD22-4SCAR-expressing T-cells 4SCAR22, Autologous CD38-4SCAR-expressing T-cells 4SCAR38, Autologous Clonal Neoantigen T Cells ATL001, Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19, Autologous Deep IL-15 Primed T-cells TRQ15-01, Autologous Dendritic Cell Vaccine ACT2001, Autologous Dendritic Cell-based Immunotherapeutic AV0113, Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa, Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells, Autologous Genetically-modified MAGE-A4 C1032 T Cells, Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858, Autologous HPV16 E7-specific HLA-A*02:01-restricted TCR Gene Engineered Lymphocytes KITE-439, Autologous LMP1/LMP2/EBNA1-specific HLA-A02:01/24:02/11:01-restricted TCR-expressing T-lymphocytes YT-E001, Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718, Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR, Autologous Mesenchymal Stem Cells Apceth_101, Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11, Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC, Autologous Multi-lineage Potential Cells, Autologous Nectin-4/FAP-targeted CAR-T Cells, Autologous NKG2D CAR T-cells CYAD-02, Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01, Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine, Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001, Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101, Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601, Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201, Autologous ROR2-targeted CAR T-cells CCT301-59, Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1, Autologous TCR-engineered T-cells IMA201, Autologous TCR-engineered T-cells IMA202, Autologous TCR-engineered T-cells IMA203, Autologous TCRm-expressing T-cells ET140203, Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG, Autologous Tumor Infiltrating Lymphocytes LN-144, Autologous Tumor Infiltrating Lymphocytes LN-145, Autologous Tumor Infiltrating Lymphocytes LN-145-S1, Autologous Tumor Infiltrating Lymphocytes MDA-TIL, Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T, Avadomide, Avadomide Hydrochloride, Avapritinib, Avdoralimab, Avelumab, Aviscumine, Avitinib Maleate, Axalimogene Filolisbac, Axatilimab, Axicabtagene Ciloleucel, Axitinib, AXL Inhibitor DS-1205c, AXL Inhibitor SLC-391, AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M, AXL/ FLT3/VEGFR2 Inhibitor KC1036, Axl/Mer Inhibitor INCB081776, Axl/Mer Inhibitor PF-07265807, Azacitidine, Azapicyl, Azaribine, Azaserine, Azathioprine, Azimexon, Azintuxizumab Vedotin, Aziridinylbenzoquinone RH1, Azotomycin, Azurin:50-77 Cell Penetrating Peptide p28, B-Raf/VEGFR-2 Inhibitor RAF265, Babaodan Capsule, Bacillus Calmette-Guerin Substrain Connaught Live Antigen, Bactobolin, Bafetinib, Balixafortide, Balstilimab, Baltaleucel-T, Banoxantrone, Barasertib, Bardoxolone, Bardoxolone Methyl, Baricitinib, Batabulin, Batabulin Sodium, Batimastat, Bavituximab, Bazedoxifene, Bazlitoran, BC-819 Plasmid/Polyethylenimine Complex, BCG Solution, BCG Tokyo-172 Strain Solution, BCG Vaccine, Bcl-2 Inhibitor APG 2575, Bcl-2 Inhibitor BCL201, Bcl-2 Inhibitor BGB-11417, Bcl-2 Inhibitor LP-108, Bcl-2 Inhibitor S65487, Bcl-Xs Adenovirus Vaccine, BCMA x CD3 T-cell Engaging Antibody CC-93269, BCMA-CD19 Compound CAR T Cells, BCMA/CD3e Tri-specific T-cell Activating Construct HPN217, Bcr-Abl Kinase Inhibitor K0706, Bcr-Abl Kinase Inhibitor PF-114, BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351, Beauvericin, Becatecarin, Belagenpumatucel-L, Belantamab Mafodotin, Belapectin, Belimumab, Belinostat, Belotecan Hydrochloride, Belvarafenib, Belzutifan, Bemarituzumab, Bemcentinib, Bempegaldesleukin, Benaxibine, Bendamustine, Bendamustine Hydrochloride, Bendamustine-containing Nanoparticle-based Formulation RXDX-107, Benzaldehyde Dimethane Sulfonate, Benzoylphenylurea, Berberine Chloride, Bermekimab, Bersanlimab, Berubicin Hydrochloride, Berzosertib, BET Bromodomain Inhibitor ZEN-3694, BET Inhibitor ABBV-744, BET Inhibitor BAY1238097, BET inhibitor BI 894999, BET Inhibitor BMS-986158, BET Inhibitor CC-90010, BET Inhibitor CPI-0610, BET Inhibitor FT-1101, BET Inhibitor GS-5829, BET Inhibitor GSK2820151, BET Inhibitor INCB054329, BET Inhibitor INCB057643, BET Inhibitor RO6870810, BET-bromodomain Inhibitor ODM-207, Beta Alethine, Beta-Carotene, Beta-elemene, Beta-Glucan, Beta-Glucan MM-10-001, Beta-lapachone Prodrug ARQ 761, Beta-Thioguanine Deoxyriboside, Betaglucin Gel, Betulinic Acid, Bevacizumab, Bexarotene, Bexmarilimab, BF-200 Gel Formulation, BH3 Mimetic ABT-737, Bi-functional Alkylating Agent VAL-083, Bicalutamide, Bimiralisib, Binetrakin, Binimetinib, Bintrafusp Alfa, Birabresib, Birinapant, Bis(choline)tetrathiomolybdate, Bisantrene, Bisantrene Hydrochloride, Bisnafide, Bisnafide Dimesylate, Bispecific Antibody 2B1, Bispecific Antibody AGEN1223, Bispecific Antibody AMG 509, Bispecific Antibody GS-1423, Bispecific Antibody MDX-H210, Bispecific Antibody MDX447, Bisthianostat, BiTE Antibody AMG 910, Bivalent BRD4 Inhibitor AZD5153, Bizalimogene Ralaplasmid, Bizelesin, BL22 Immunotoxin, Black Cohosh, Black Raspberry Nectar, Bleomycin, Bleomycin A2, Bleomycin B2, Bleomycin Sulfate, Blinatumomab, Blueberry Powder Supplement, BMI1 Inhibitor PTC596, BMS-184476, BMS-188797, BMS-214662, BMS-275183, Boanmycin Hydrochloride, Bomedemstat, Boronophenylalanine-Fructose Complex, Bortezomib, Bosutinib, Bosutinib Monohydrate, Botanical Agent BEL-X-HG, Botanical Agent LEAC-102, Bovine Cartilage, Bozitinib, BP-Cx1-Platinum Complex BP-C1, BR96-Doxorubicin Immunoconjugate, Brachyury-expressing Yeast Vaccine GI-6301, BRAF Inhibitor, BRAF Inhibitor ARQ 736, BRAF Inhibitor BGB-3245, BRAF Inhibitor PLX8394, BRAF(V600E) Kinase Inhibitor ABM-1310, BRAF(V600E) Kinase Inhibitor RO5212054, BRAF/EGFR Inhibitor BGB-283, BRAFV600/PI3K Inhibitor ASN003, BRD4 Inhibitor PLX2853, BRD4 Inhibitor PLX51107, Breflate, Brentuximab, Brentuximab Vedotin, Brequinar, Brequinar Sodium, Briciclib Sodium, Brigatinib, Brilanestrant, Brimonidine Tartrate Nanoemulsion OCU-300, Brivanib, Brivanib Alaninate, Brivudine, Brivudine Phosphoramidate, Broad-Spectrum Human Papillomavirus Vaccine V505, Broccoli Sprout/Broccoli Seed Extract Supplement, Bromacrylide, Bromebric Acid, Bromocriptine Mesylate, Brontictuzumab, Brostacillin Hydrochloride, Brostallicin, Broxuridine, Bruceanol A, Bruceanol B, Bruceanol C, Bruceanol D, Bruceanol E, Bruceanol F, Bruceanol G, Bruceanol H, Bruceantin, Bryostatin 1, BTK Inhibitor ARQ 531, BTK Inhibitor CT-1530, BTK Inhibitor DTRMWXHS-12, BTK Inhibitor HZ-A-018, BTK Inhibitor ICP-022, BTK Inhibitor LOXO-305, BTK Inhibitor M7583, BTK inhibitor TG-1701, Budigalimab, Budotitane, Bufalin, Buparlisib, Burixafor, Burixafor Hydrobromide, Burosumab, Buserelin, Bushen Culuan Decoction, Bushen-Jianpi Decoction, Busulfan, Buthionine Sulfoximine, BXQ-350 Nanovesicle Formulation, c-Kit Inhibitor PLX9486, c-Met Inhibitor ABN401, c-Met Inhibitor AL2846, c-Met Inhibitor AMG 208, c-Met Inhibitor AMG 337, c-Met Inhibitor GST-HG161, c-Met Inhibitor HS-10241, c-Met Inhibitor JNJ-38877605, c-Met Inhibitor MK2461, c-Met Inhibitor MK8033, c-Met Inhibitor MSC2156119J, C-myb Antisense Oligonucleotide G4460, c-raf Antisense Oligonucleotide ISIS 5132, C-VISA BikDD:Liposome, C/EBP Beta Antagonist ST101, CAB-ROR2-ADC BA3021, Cabazitaxel, Cabiralizumab, Cabozantinib, Cabozantinib S-malate, Cactinomycin, Caffeic Acid Phenethyl Ester, CAIX Inhibitor DTP348, CAIX Inhibitor SLC-0111, Calaspargase Pegol-mknl, Calcitriol, Calcium Release-activated Channel Inhibitor CM4620, Calcium Release-activated Channels Inhibitor RP4010, Calcium Saccharate, Calculus bovis/Moschus/Olibanum/Myrrha Capsule, Calicheamicin Gamma 1I, Camidanlumab Tesirine, Camptothecin, Camptothecin Analogue TLC388, Camptothecin Glycoconjugate BAY 38-3441, Camptothecin Sodium, Camptothecin-20(S)-O-Propionate Hydrate, Camrelizumab, Camsirubicin, Cancell, Cancer Peptide Vaccine S-588410, Canerpaturev, Canertinib Dihydrochloride, Canfosfamide, Canfosfamide Hydrochloride, Cannabidiol, Cantrixil, Cantuzumab Ravtansine, Capecitabine, Capecitabine Rapidly Disintegrating Tablet, Capivasertib, Capmatinib, Captopril, CAR T-Cells AMG 119, Caracemide, Carbendazim, Carbetimer, Carbogen, Carbon C 14-pamiparib, Carboplatin, Carboquone, Carboxyamidotriazole, Carboxyamidotriazole Orotate, Carboxyphenyl Retinamide, Carfilzomib, Caricotamide/Tretazicar, Carlumab, Carmofur, Carmustine, Carmustine Implant, Carmustine in Ethanol, Carmustine Sustained-Release Implant Wafer, Carotuximab, Carubicin, Carubicin Hydrochloride, Carzelesin, Carzinophilin, Cathelicidin LL-37, Cationic Liposome-Encapsulated Paclitaxel, Cationic Peptide Cream Cypep-1, Catumaxomab, CBP/beta-catenin Antagonist PRI-724, CBP/beta-catenin Modulator E7386, CCR2 Antagonist CCX872-B, CCR2 Antagonist PF-04136309, CCR2/CCR5 Antagonist BMS-813160, CCR4 Inhibitor FLX475, CD11b Agonist GB1275, CD123-CD33 Compound CAR T Cells, CD123-specific Targeting Module TM123, CD20-CD19 Compound CAR T Cells, CD28/ICOS Antagonist ALPN-101, CD4-specific Telomerase Peptide Vaccine UCPVax, CD40 Agonist Monoclonal Antibody CP-870;893, CD40 Agonistic Monoclonal Antibody APX005M, CD44 Targeted Agent SPL-108, CD44v6-specific CAR T-cells, CD47 Antagonist ALX148, CD73 Inhibitor AB680, CD73 Inhibitor LY3475070, CD80-Fc Fusion Protein ALPN-202, CD80-Fc Fusion Protein FPT155, CDC7 Inhibitor TAK-931, CDC7 Kinase Inhibitor BMS-863233, CDC7 Kinase Inhibitor LY3143921 Hydrate, CDC7 Kinase Inhibitor NMS-1116354, CDK Inhibitor AT7519, CDK Inhibitor R547, CDK Inhibitor SNS-032, CDK/JAK2/FLT3 Inhibitor TG02 Citrate, CDK1 Inhibitor BEY1107, CDK1/2/4 Inhibitor AG-024322, CDK2 Inhibitor PF-07104091, CDK2/4/6/FLT3 Inhibitor FN-1501, CDK2/5/9 Inhibitor CYC065, CDK4 Inhibitor P1446A-05, CDK4/6 Inhibitor, CDK4/6 Inhibitor BPI-16350, CDK4/6 Inhibitor CS3002, CDK4/6 Inhibitor FCN-437, CDK4/6 Inhibitor G1T38, CDK4/6 Inhibitor HS-10342, CDK4/6 Inhibitor SHR6390, CDK4/6 Inhibitor TQB3616, CDK7 Inhibitor CT7001, CDK7 Inhibitor SY-1365, CDK7 Inhibitor SY-5609, CDK8/19 Inhibitor SEL 120, CDK9 Inhibitor AZD4573, CEA-MUC-1-TRICOM Vaccine CV301, CEA-targeting Agent RG6123, CEBPA-targeting saRNA MTL-CEBPA Liposome, Cedazuridine, Cedazuridine/Azacitidine Combination Agent ASTX030, Cedazuridine/Decitabine Combination Agent ASTX727, Cedefingol, Cediranib, Cediranib Maleate, Celecoxib, Cell Cycle Checkpoint/DNA Repair Antagonist IC83, Cemadotin, Cemadotin Hydrochloride, Cemiplimab, Cenersen, Cenisertib, CENP-E Inhibitor GSK-923295, Ceralasertib, Ceramide Nanoliposome, Cerdulatinib, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282, Cereblon Modulator CC-90009, Cergutuzumab Amunaleukin, Ceritinib, Cesalin, cEt KRAS Antisense Oligonucleotide AZD4785, Cetrelimab, Cetuximab, Cetuximab Sarotalocan, Cetuximab-IR700 Conjugate RM-1929, Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY), Cevipabulin, Cevipabulin Fumarate, Cevipabulin Succinate, Cevostamab, cFMS Tyrosine Kinase Inhibitor ARRY-382, Chaparrin, Chaparrinone, Checkpoint Kinase Inhibitor AZD7762, Checkpoint Kinase Inhibitor XL844, Chemotherapy, Chiauranib, Chimeric Monoclonal Antibody 81C6, ChiNing Decoction, Chk1 Inhibitor CCT245737, Chk1 Inhibitor GDC-0425, Chk1 Inhibitor GDC-0575, CHK1 Inhibitor MK-8776, CHK1 Inhibitor PF-477736, Chlorambucil, Chlorodihydropyrimidine, Chloroquine, Chloroquinoxaline Sulfonamide, Chlorotoxin, Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes, Chlorozotocin, Choline Kinase Alpha Inhibitor TCD-717, CHP-NY-ESO-1 Peptide Vaccine IMF-001, Chromomycin A3, Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement, Cibisatamab, Ciclopirox Prodrug CPX-POM, Cidan Herbal Capsule, Ciforadenant, Cilengitide, Ciltacabtagene Autoleucel, Cimetidine, Cinacalcet Hydrochloride, Cinobufagin, Cinobufotalin, Cinrebafusp Alfa, Cintirorgon, Cintredekin Besudotox, Cirmtuzumab, cis-Urocanic Acid, Cisplatin, Cisplatin Liposomal, Cisplatin-E Therapeutic Implant, Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6, Citarinostat, Citatuzumab Bogatox, Cixutumumab, CK1alpha/CDK7/CDK9 Inhibitor BTX-A51, CK2-targeting Synthetic Peptide CIGB-300, CL 246738, Cladribine, Clanfenur, Clarithromycin, Class 1/4 Histone Deacetylase Inhibitor OKI-179, Clinical Trial, Clinical Trial Agent, Clioquinol, Clivatuzumab, Clodronate Disodium, Clodronic Acid, Clofarabine, Clomesone, Clomiphene, Clomiphene Citrate, Clostridium Novyi-NT Spores, Cobimetinib, Cobolimab, Cobomarsen, Codrituzumab, Coenzyme Q10, Cofetuzumab Pelidotin, Colchicine-Site Binding Agent ABT-751, Cold Contaminant-free Iobenguane I-131, Colloidal Gold-Bound Tumor Necrosis Factor, Colorectal Cancer Peptide Vaccine PolyPEPI1018, Colorectal Tumor-Associated Peptides Vaccine IMA910, Coltuximab Ravtansine, Combretastatin, Combretastatin A-1, Combretastatin A1 Diphosphate, Commensal Bacterial Strain Formulation VE800, Compound Kushen Injection, Conatumumab, Conbercept, Concentrated Lingzhi Mushroom Extract, Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011, Copanlisib, Copanlisib Hydrochloride, Copper Cu 64-ATSM, Copper Cu 67 Tyr3-octreotate, Copper Gluconate, Cord Blood Derived CAR T-Cells, Cord Blood-derived Expanded Natural Killer Cells PNK-007, Cordycepin, Cordycepin Triphosphate, Coriolus Versicolor Extract, Corticorelin Acetate, Cortisone Acetate, Cosibelimab, Cositecan, Coxsackievirus A21, Coxsackievirus V937, CpG Oligodeoxynucleotide GNKG168, Crenolanib, Crenolanib Besylate, Crizotinib, Crolibulin, Cryptophycin, Cryptophycin 52, Crystalline Genistein Formulation AXP107-11, CSF-1R Inhibitor BLZ945, CSF1R Inhibitor ABSK021, CSF1R Inhibitor DCC-3014, CSF1R Inhibitor PLX73086, CT2584 HMS, CTLA-4-directed Probody BMS-986249, Curcumin, Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110, Cusatuzumab, Custirsen Sodium, CXC Chemokine Receptor 2 Antagonist AZD5069, CXCR1/2 Inhibitor SX-682, CXCR2 Antagonist QBM076, CXCR4 Antagonist BL-8040, CXCR4 Antagonist USL311, CXCR4 Inhibitor Q-122, CXCR4 Peptide Antagonist LY2510924, CXCR4/E-selectin Antagonist GMI-1359, Cyclin-dependent Kinase 8/19 Inhibitor BCD 115, Cyclin-dependent Kinase Inhibitor PF-06873600, Cyclodextrin-Based Polymer-Camptothecin CRLX101, Cyclodisone, Cycloleucine, Cyclopentenyl Cytosine, Cyclophosphamide, Cyclophosphamide Anhydrous, Cyclosporine, CYL-02 Plasmid DNA, CYP11A1 inhibitor ODM-208, CYP11A1 Inhibitor ODM-209, CYP17 Inhibitor CFG920, CYP17 Lyase Inhibitor ASN001, CYP17/Androgen Receptor Inhibitor ODM 204, CYP17/CYP11B2 Inhibitor LAE001, Cyproterone, Cyproterone Acetate, Cytarabine, Cytarabine Monophosphate Prodrug MB07133, Cytarabine-asparagine Prodrug BST-236, Cytidine Analog RX-3117, Cytochlor, Cytokine-based Biologic Agent IRX-2, D-methionine Formulation MRX-1024, DAB389 Epidermal Growth Factor, Dabrafenib, Dabrafenib Mesylate, Dacarbazine, Dacetuzumab, DACH Polymer Platinate AP5346, DACH-Platin Micelle NC-4016, Daclizumab, Dacomitinib, Dacplatinum, Dactinomycin, Dactolisib, Dactolisib Tosylate, Dalantercept, Dalotuzumab, Daniquidone, Danusertib, Danvatirsen, Daporinad, Daratumumab, Daratumumab and Hyaluronidase-fihj, Daratumumab/rHuPH20, Darinaparsin, Darleukin, Darolutamide, Daromun, Dasatinib, Daunorubicin, Daunorubicin Citrate, Daunorubicin Hydrochloride, DEC-205/NY-ESO-1 Fusion Protein CDX-1401, Decitabine, Decitabine and Cedazuridine, Defactinib, Defactinib Hydrochloride, Deferoxamine, Deferoxamine Mesylate, Degarelix, Degarelix Acetate, Delanzomib, Delolimogene Mupadenorepvec, Demcizumab, Demecolcine, Demplatin Pegraglumer, Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466, Dendritic Cell Vaccine, Dendritic Cell-Autologous Lung Tumor Vaccine, Dendritic Cell-targeting Lentiviral Vector ID-LV305, Denenicokin, Dengue Virus Adjuvant PV-001-DV, Denibulin, Denibulin Hydrochloride, Denileukin Diftitox, Denintuzumab Mafodotin, Denosumab, Deoxycytidine Analogue TAS-109, Deoxycytidine Analogue TAS-109 Hydrochloride, Depatuxizumab, Depatuxizumab Mafodotin, Derazantinib, Deslorelin, Deslorelin Acetate, Detirelix, Detorubicin, Deuteporfin, Deuterated Enzalutamide, Devimistat, Dexamethason, Dexamethasone, Dexamethasone Phosphate, Dexamethasone Sodium Phosphate, Dexanabinol, Dexrazoxane, Dexrazoxane Hydrochloride, Dezaguanine, Dezaguanine Mesylate, Dezapelisib, DHA-Paclitaxel, DHEA Mustard, DI-Leu16-IL2 Immunocytokine, Dianhydrogalactitol, Diarylsulfonylurea Compound ILX-295501, Diazepinomicin, Diaziquone, Diazooxonorleucine, Dibrospidium Chloride, Dichloroallyl Lawsone, Dicycloplatin, Didox, Dienogest, Diethylnorspermine, Digitoxin, Digoxin, Dihydro-5-Azacytidine, Dihydrolenperone, Dihydroorotate Dehydrogenase Inhibitor AG-636, Dihydroorotate Dehydrogenase Inhibitor BAY2402234, Diindolylmethane, Dilpacimab, Dimethylmyleran, Dinaciclib, Dinutuximab, Dioscorea nipponica Makino Extract DNE3, Diphencyprone, Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777, Ditiocarb, DKK1-Neutralizing Monoclonal Antibody DKN-01, DM-CHOC-PEN, DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015, DNA Interference Oligonucleotide PNT2258, DNA Minor Groove Binding Agent SG2000, DNA Plasmid Encoding Interleukin-12 INO-9012, DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151, DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457, DNA Vaccine VB10.16, DNA-dependent Protein Kinase Inhibitor VX-984, DNA-PK inhibitor AZD7648, DNA-PK/PI3K-delta Inhibitor BR101801, DNA-PK/TOR Kinase Inhibitor CC-115, DNMT1 Inhibitor NTX-301, DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98, Docetaxel, Docetaxel Anhydrous, Docetaxel Emulsion ANX-514, Docetaxel Formulation CKD-810, Docetaxel Lipid Microspheres, Docetaxel Nanoparticle CPC634, Docetaxel Polymeric Micelles, Docetaxel-loaded Nanopharmaceutical CRLX301, Docetaxel-PNP, Docetaxel/Ritonavir, Dociparstat sodium, Dolastatin 10, Dolastatin 15, Domatinostat, Donafenib, Dopamine-Somatostatin Chimeric Molecule BIM-23A760, Dostarlimab, Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703, Dovitinib, Dovitinib Lactate, Doxazosin, Doxercalciferol, Doxifluridine, Doxorubicin, Doxorubicin Hydrochloride, Doxorubicin Prodrug L-377;202, Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370, Doxorubicin-Eluting Beads, Doxorubicin-HPMA Conjugate, Doxorubicin-loaded EGFR-targeting Nanocells, Doxorubicin-Magnetic Targeted Carrier Complex, DPT/BCG/Measles/Serratia/Pneumococcus Vaccine, DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine, DPX-E7 HPV Vaccine, DR5 HexaBody Agonist GEN1029, DR5-targeting Tetrameric Nanobody Agonist TAS266, Dromostanolone Propionate, Drozitumab, DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555, Dual IGF-1R/InsR Inhibitor BMS-754807, Dual Variable Domain Immunoglobulin ABT-165, Dual-affinity B7-H3/CD3-targeted Protein MGD009, Dubermatinib, Duborimycin, Dulanermin, Duligotuzumab, Dupilumab, Durvalumab, Dusigitumab, dUTPase/DPD Inhibitor TAS-114, Duvelisib, Duvortuxizumab, Dynemicin, Dynemicin A, E2F1 Pathway Activator ARQ 171, EBNA-1 inhibitor VK-2019, Echinomycin, Ecromeximab, Edatrexate, Edelfosine, Edicotinib, Edodekin alfa, Edotecarin, Edrecolomab, EED Inhibitor MAK683, Efatutazone, Efatutazone Dihydrochloride, Efizonerimod, Eflornithine, Eflornithine Hydrochloride, Eftilagimod Alpha, Eftozanermin Alfa, Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205, Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621, EGb761, EGFR Antagonist Hemay022, EGFR Antisense DNA BB-401, EGFR Inhibitor AZD3759, EGFR Inhibitor BIBX 1382, EGFR Inhibitor DBPR112, EGFR Inhibitor PD-168393, EGFR Inhibitor TY-9591, EGFR Mutant-selective Inhibitor TQB3804, EGFR Mutant-specific Inhibitor BPI-7711, EGFR Mutant-specific Inhibitor CK-101, EGFR Mutant-specific Inhibitor D-0316, EGFR Mutant-specific Inhibitor ZN-e4, EGFR T790M Antagonist BPI-15086, EGFR T790M Inhibitor HS-10296, EGFR/EGFRvIII Inhibitor WSD0922-FU, EGFR/FLT3/Abl Inhibitor SKLB1028, EGFR/HER1/HER2 Inhibitor PKI166, EGFR/HER2 Inhibitor AP32788, EGFR/HER2 Inhibitor AV-412, EGFR/HER2 Inhibitor DZD9008, EGFR/HER2 Kinase Inhibitor TAK-285, EGFR/TGFb Fusion Monoclonal Antibody BCA101, EGFR/VEGFR/RET Inhibitor HA121-28, Eicosapentaenoic Acid, eIF4E Antisense Oligonucleotide ISIS 183750, Elacestrant, Elacytarabine, Elagolix, Elbasvir/Grazoprevir, Elesclomol, Elesclomol Sodium, Elgemtumab, Elinafide, Elisidepsin, Elliptinium, Elliptinium Acetate, Elmustine, Elotuzumab, Elpamotide, Elsamitrucin, Eltanexor, Emactuzumab, Emapalumab, Emepepimut-S, Emibetuzumab, Emitefur, Emofolin Sodium, Empesertib, Enadenotucirev, Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A, Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641, Enasidenib, Enasidenib Mesylate, Enavatuzumab, Encapsulated Rapamycin, Encelimab, Enclomiphene, Enclomiphene Citrate, Encorafenib, Endothelin B Receptor Blocker ENB 003, Endothelin Receptor Type A Antagonist YM598, Enfortumab Vedotin, Engineered Human Umbilical Vein Endothelial Cells AB-205, Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240, Engineered Toxin Body Targeting CD38 TAK-169, Engineered Toxin Body Targeting HER2 MT-5111, Eniluracil/5-FU Combination Tablet, Enloplatin, Enoblituzumab, Enobosarm, Enoticumab, Enpromate, Ensartinib, Ensituximab, Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride, Enterococcus gallinarum Strain MRx0518, Entinostat, Entolimod, Entospletinib, Entrectinib, Envafolimab, Enzalutamide, Enzastaurin, Enzastaurin Hydrochloride, EP2/EP4 Antagonist TPST-1495, EP4 Antagonist INV-1120, EP4 Antagonist ONO-4578, Epacadostat, Epcoritamab, EphA2-targeting Bicycle Toxin Conjugate BT5528, Epipodophyllotoxin Analog GL331, Epipropidine, Epirubicin, Epirubicin Hydrochloride, Epitinib Succinate, Epitiostanol, Epothilone Analog UTD1, Epothilone KOS-1584, Epratuzumab, Epratuzumab-cys-tesirine, ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471, ERa36 Modulator Icaritin, Erastin Analogue PRLX 93936, Erbulozole, Erdafitinib, Eribulin, Eribulin Mesylate, ERK 1/2 Inhibitor ASTX029, ERK Inhibitor CC-90003, ERK Inhibitor GDC-0994, ERK Inhibitor LTT462, ERK Inhibitor MK-8353, ERK1/2 Inhibitor ASN007, ERK1/2 Inhibitor HH2710, ERK1/2 Inhibitor JSI-1187, ERK1/2 Inhibitor KO-947, ERK1/2 Inhibitor LY3214996, Erlotinib, Erlotinib Hydrochloride, Ertumaxomab, Erythrocyte-encapsulated L-asparaginase Suspension, Esorubicin, Esorubicin Hydrochloride, Esperamicin A1, Essiac, Esterified Estrogens, Estradiol Valerate, Estramustine, Estramustine Phosphate Sodium, Estrogen Receptor Agonist GTx-758, Estrogens; Conjugated, Etalocib, Etanercept, Etanidazole, Etaracizumab, Etarotene, Ethaselen, Ethinyl Estradiol, Ethyleneimine, Ethylnitrosourea, Etidronate-Cytarabine Conjugate MBC-11, Etigilimab, Etirinotecan Pegol, Etoglucid, Etoposide, Etoposide Phosphate, Etoposide Toniribate, Etoprine, Etoricoxib, Ets-family Transcription Factor Inhibitor TK216, Everolimus, Everolimus Tablets for Oral Suspension, Evofosfamide, Ex Vivo-expanded Autologous T Cells IMA101, Exatecan Mesylate, Exatecan Mesylate Anhydrous, Exemestane, Exicorilant, Exisulind, Extended Release Flucytosine, Extended Release Metformin Hydrochloride, Extended-release Onapristone, Ezabenlimab, EZH1/2 Inhibitor DS-3201, EZH1/2 Inhibitor HH2853, EZH2 inhibitor CPI-0209, EZH2 Inhibitor CPI-1205, EZH2 Inhibitor PF-06821497, EZH2 Inhibitor SHR2554, F16-IL2 Fusion Protein, FACT Complex-targeting Curaxin CBL0137, Factor VII-targeting Immunoconjugate Protein ICON-1, Factor VIIa Inhibitor PCI-27483, Fadraciclib, Fadrozole Hydrochloride, FAK Inhibitor GSK2256098, FAK Inhibitor PF-00562271, FAK Inhibitor VS-4718, FAK/ALK/ROS1 Inhibitor APG-2449, Falimarev, Famitinib, FAP/4-1BB-targeting DARPin MP0310, FAP/4-1BB-targeting Fusion Protein RO7122290, Farletuzumab, Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123, Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells, Fas Receptor Agonist APO010, Fascin Inhibitor NP-G2-044, FASN Inhibitor TVB-2640, Favezelimab, Fazarabine, Fc-engineered Anti-CD40 Agonist Antibody 2141-V11, Febuxostat, Fedratinib, Fedratinib Hydrochloride, Feladilimab, Felzartamab, Fenebrutinib, Fenretinide, Fenretinide Lipid Matrix, Fenretinide Phospholipid Suspension ST-001, FGF Receptor Antagonist HGS1036, FGF/FGFR Pathway Inhibitor E7090, FGFR Inhibitor ASP5878, FGFR Inhibitor AZD4547, FGFR Inhibitor CPL304110, FGFR Inhibitor Debio 1347, FGFR Inhibitor TAS-120, FGFR/CSF-1R Inhibitor 3D185, FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999, FGFR1/2/3 Inhibitor HMPL-453, FGFR2 Inhibitor RLY-4008, FGFR4 Antagonist INCB062079, FGFR4 Inhibitor BLU 9931, FGFR4 Inhibitor FGF401, FGFR4 Inhibitor H3B-6527, FGFR4 Inhibitor ICP-105, Fianlimab, Fibromun, Ficlatuzumab, Figitumumab, Filanesib, Filgotinib, Filgrastim, Fimaporfin A, Fimepinostat, Firtecan Pegol, Fisogatinib, Flanvotumab, Flotetuzumab, Floxuridine, FLT3 Inhibitor FF-10101 Succinate, FLT3 Inhibitor HM43239, FLT3 Inhibitor SKI-G-801, Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01, FLT3 Tyrosine Kinase Inhibitor TTT-3002, FLT3/ABL/Aurora Kinase Inhibitor KW-2449, FLT3/CDK4/6 Inhibitor FLX925, FLT3/FGFR Dual Kinase Inhibitor MAX-40279, FLT3/KIT Kinase Inhibitor AKN-028, FLT3/KIT/CSF1R Inhibitor NMS-03592088, Flt3/MerTK Inhibitor MRX-2843, Fludarabine, Fludarabine Phosphate, Flumatinib, Flumatinib Mesylate, Fluorine F 18 Ara-G, Fluorodopan, Fluorouracil, Fluorouracil Implant, Fluorouracil-E Therapeutic Implant, Fluoxymesterone, Flutamide, Fluvastatin, Fluvastatin Sodium, Fluzoparib, FMS Inhibitor JNJ-40346527, Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate, Folate Receptor Targeted Epothilone BMS753493, Folate Receptor-Targeted Tubulysin Conjugate EC1456, Folate Receptor-Targeted Vinca Alkaloid EC0489, Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225, Folate-FITC, Folic Acid, Folitixorin, Foretinib, Foritinib Succinate, Formestane, Forodesine Hydrochloride, Fosaprepitant, Fosbretabulin, Fosbretabulin Disodium, Fosbretabulin Tromethamine, Fosgemcitabine Palabenamide, Fosifloxuridine Nafalbenamide, Foslinanib, Foslinanib Disodium, Fosquidone, Fostriecin, Fotemustine, Fotretamine, FPV Vaccine CV301, FPV-Brachyury-TRICOM Vaccine, Fresolimumab, Fruquintinib, Fulvestrant, Fumagillin-Derived Polymer Conjugate XMT-1107, Fursultiamine, Futibatinib, Futuximab, Futuximab/Modotuximab Mixture, G Protein-coupled Estrogen Receptor Agonist LNS8801, G-Quadruplex Stabilizer BMVC, Galamustine, Galarubicin, Galectin Inhibitor GR-MD-02, Galectin-1 Inhibitor OTX008, Galeterone, Galiximab, Gallium-based Bone Resorption Inhibitor AP-002, Galocitabine, Galunisertib, Gamboge Resin Extract TSB-9-W1, Gamma-delta Tocotrienol, Gamma-Secretase Inhibitor LY3039478, Gamma-Secretase Inhibitor RO4929097, Gandotinib, Ganetespib, Ganglioside GD2, Ganglioside GM2, Ganitumab, Ganoderma lucidum Spores Powder Capsule, Garlic, Gastrin Immunotoxin, Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360, Gataparsen Sodium, Gatipotuzumab, GBM Antigens and Alloantigens Immunotherapeutic Vaccine, Gedatolisib, Gefitinib, Geldanamycin, Gelonin, Gemcitabine, Gemcitabine Elaidate, Gemcitabine Hydrochloride, Gemcitabine Hydrochloride Emulsion, Gemcitabine Prodrug LY2334737, Gemcitabine-Phosphoramidate Hydrochloride NUC-1031, Gemcitabine-Releasing Intravesical System, Gemtuzumab Ozogamicin, Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum, Genistein, Gentuximab, Geranylgeranyltransferase I Inhibitor, GI-4000 Vaccine, Giloralimab, Gilteritinib, Gilteritinib Fumarate, Gimatecan, Gimeracil, Ginsenoside Rg3 Capsule, Giredestrant, Girentuximab, Girodazole, GITR Agonist MEDI1873, Givinostat, Glasdegib, Glasdegib Maleate, Glaucarubolone, Glecaprevir/Pibrentasvir, Glembatumumab Vedotin, Glesatinib, Glioblastoma Cancer Vaccine ERC1671, Glioblastoma Multiforme Multipeptide Vaccine IMA950, Glioma Lysate Vaccine GBM6-AD, Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701, Globo H-DT Vaccine OBI-833, Glofitamab, Glucarpidase, Glucocorticoid Receptor Antagonist ORIC-101, Glufosfamide, Glumetinib, Glutaminase Inhibitor CB-839, Glutaminase Inhibitor CB-839 Hydrochloride, Glutaminase Inhibitor IPN60090, Glutamine Antagonist DRP-104, Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101, Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01, Glycooptimized Trastuzumab-GEX, GM-CSF-encoding Oncolytic Adenovirus CGTG-102, Gold Sodium Thiomalate, Golnerminogene Pradenovec, Golotimod, Golvatinib, Gonadotropin-releasing Hormone Analog, Goserelin, Goserelin Acetate, Goserelin Acetate Extended-release Microspheres LY01005, Gossypol, Gossypol Acetic Acid, Grapiprant, Green Tea Extract-based Antioxidant Supplement, GS/pan-Notch Inhibitor AL101, GS/pan-Notch Inhibitor BMS-986115, GSK-3 Inhibitor 9-ING-41, GSK-3 Inhibitor LY2090314, Guadecitabine, Guanabenz Acetate, Guselkumab, Gusperimus Trihydrochloride, Gutolactone, H-ras Antisense Oligodeoxynucleotide ISIS 2503, H1299 Tumor Cell Lysate Vaccine, HAAH Lambda phage Vaccine SNS-301, Hafnium Oxide-containing Nanoparticles NBTXR3, Halichondrin Analogue E7130, Halichondrin B, Halofuginone, Halofuginone Hydrobromide, HCV DNA Vaccine INO-8000, HDAC Class I/IIb Inhibitor HG146, HDAC Inhibitor AR-42, HDAC inhibitor CG200745, HDAC Inhibitor CHR-2845, HDAC Inhibitor CKD-581, HDAC Inhibitor CXD101, HDAC Inhibitor MPT0E028, HDAC Inhibitor OBP-801, HDAC/EGFR/HER2 Inhibitor CUDC-101, HDAC6 Inhibitor KA2507, HDAC8 Inhibitor NBM-BMX, HDM2 Inhibitor HDM201, HDM2 Inhibitor MK-8242, Hedgehog Inhibitor IPI-609, Hematoporphyrin Derivative, Hemiasterlin Analog E7974, Henatinib Maleate, Heparan Sulfate Glycosaminoglycan Mimetic M402, Heparin Derivative SST0001, HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131, HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901, HER2 Inhibitor CP-724;714, HER2 Inhibitor DZD1516, HER2 Inhibitor TAS0728, HER2 Tri-specific Natural Killer Cell Engager DF1001, HER2-directed TLR8 Agonist SBT6050, HER2-targeted DARPin MP0274, HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302, HER2-targeting Antibody Fc Fragment FS102, Herba Scutellaria Barbata, Herbimycin, Heterodimeric Interleukin-15, Hexamethylene Bisacetamide, Hexaminolevulinate, Hexylresorcinol, HIF-1alpha Inhibitor PX-478, HIF-2alpha Inhibitor PT2385, HIF-2alpha Inhibitor PT2977, HIF2a RNAi ARO-HIF2, Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126, Histrelin Acetate, HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001, HLA-A*2402-Restricted Multipeptide Vaccine S-488410, HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201, HM2/MMAE Antibody-Drug Conjugate ALT-P7, Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine, Holmium Ho 166 Poly(L-Lactic Acid) Microspheres, Hormone Therapy, HPPH, HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202, HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c, HPV DNA Plasmids Therapeutic Vaccine VGX-3100, HPV E6/E7 DNA Vaccine GX-188E, HPV E6/E7-encoding Arenavirus Vaccine HB-201, HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C, HPV-16 E6 Peptides Vaccine/Candida albicans Extract, HPV-6-targeting Immunotherapeutic Vaccine INO-3106, HPV16 E7-specific HLA-A*02:01-restricted IgG1-Fc Fusion Protein CUE-101, HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN, HPV6/11-targeted DNA Plasmid Vaccine INO-3107, Hsp90 Antagonist KW-2478, Hsp90 Inhibitor AB-010, Hsp90 Inhibitor BIIB021, Hsp90 Inhibitor BIIB028, Hsp90 Inhibitor Debio 0932, Hsp90 Inhibitor DS-2248, Hsp90 Inhibitor HSP990, Hsp90 Inhibitor MPC-3100, Hsp90 Inhibitor PU-H71, Hsp90 Inhibitor SNX-5422 Mesylate, Hsp90 Inhibitor SNX-5542 Mesylate, Hsp90 Inhibitor TQB3474, Hsp90 Inhibitor XL888, Hsp90-targeted Photosensitizer HS-201, HSP90-targeted SN-38 Conjugate PEN-866, HSP90alpha/beta Inhibitor TAS-116, hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301, hTERT Vaccine V934/V935, hTERT-encoding DNA Vaccine INVAC-1, Hu14.18-IL2 Fusion Protein EMD 273063, HuaChanSu, Huaier Extract Granule, Huang Lian, huBC1-huIL12 Fusion Protein AS1409, Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736, Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104, Human MOAB LICO 28a32, Human Monoclonal Antibody 216, Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307, Human Papillomavirus 16 E7 Peptide/Padre 965.10, Hyaluronidase-zzxf/Pertuzumab/Trastuzumab, Hycanthone, Hydralazine Hydrochloride, Hydrocortisone Sodium Succinate, Hydroxychloroquine, Hydroxyprogesterone Caproate, Hydroxytyrosol, Hydroxyurea, Hypericin, Hypoxia-activated Prodrug TH-4000, I 131 Antiferritin Immunoglobulin, I 131 Monoclonal Antibody A33, I 131 Monoclonal Antibody CC49, I 131 Monoclonal Antibody F19, I 131 Monoclonal Antibody Lym-1, Iadademstat, Ianalumab, IAP Inhibitor APG-1387, IAP Inhibitor AT-406, IAP Inhibitor HGS1029, Ibandronate Sodium, Iberdomide, Iboctadekin, Ibritumomab Tiuxetan, Ibrutinib, Icotinib Hydrochloride, Icrucumab, ICT-121 Dendritic Cell Vaccine, Idarubicin, Idarubicin Hydrochloride, Idarubicin-Eluting Beads, Idasanutlin, Idecabtagene Vicleucel, Idelalisib, Idetrexed, IDH1 Mutant Inhibitor LY3410738, IDH1(R132) Inhibitor IDH305, IDH1R132H-Specific Peptide Vaccine PEPIDH1M, Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020, IDO Peptide Vaccine IO102, IDO-1 Inhibitor LY3381916, IDO/TDO Inhibitor HTI-1090, IDO/TDO Inhibitor LY-01013, IDO1 Inhibitor KHK2455, IDO1 Inhibitor MK-7162, IDO1 Inhibitor PF-06840003, IDO1/TDO2 Inhibitor DN1406131, IDO1/TDO2 Inhibitor M4112, Idronoxil, Idronoxil Suppository NOX66, Ieramilimab, Ifabotuzumab, Ifetroban, Ifosfamide, IGF-1R Inhibitor, IGF-1R Inhibitor PL225B, IGF-1R/IR Inhibitor KW-2450, IGF-methotrexate Conjugate, IL-10 Immunomodulator MK-1966, IL-12-expressing HSV-1 NSC 733972, IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051, IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000, IL-2 Recombinant Fusion Protein ALT-801, IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1, IL4-Pseudomonas Exotoxin Fusion Protein MDNA55, Ilginatinib, Ilixadencel, Iloprost, Ilorasertib, Imalumab, Imaradenant, Imatinib, Imatinib Mesylate, Imetelstat, Imetelstat Sodium, Imexon, Imgatuzumab, Imidazole Mustard, Imidazole-Pyrazole, Imifoplatin, Imipramine Blue, Imiquimod, Immediate-release Onapristone, Immediate-release Tablet Afuresertib, Immune Checkpoint Inhibitor ASP8374, Immunoconjugate RO5479599, Immunocytokine NHS-IL12, Immunocytokine NHS-IL2-LT, Immunomodulator LAM-003, Immunomodulator OHR/AVR118, Immunomodulatory Agent CC-11006, Immunomodulatory Oligonucleotide HYB2055, Immunotherapeutic Combination Product CMB305, Immunotherapeutic GSK1572932A, Immunotherapy Regimen MKC-1106-MT, Immunotoxin CMD-193, IMT-1012 Immunotherapeutic Vaccine, Inactivated Oncolytic Virus Particle GEN0101, Inalimarev, Incyclinide, Indatuximab Ravtansine, Indibulin, Indicine-N-Oxide, Indisulam, Individualized MVA-based Vaccine TG4050, Indocyanine Green-labeled Polymeric Micelles ONM-100, Indole-3-Carbinol, Indomethacin, Indoximod, Indoximod Prodrug NLG802, Indusatumab Vedotin, Inebilizumab, Inecalcitol, Infigratinib, Infigratinib Mesylate, Infliximab, Ingenol Mebutate, Ingenol Mebutate Gel, Iniparib, iNKT Cell Agonist ABX196, Innate Immunostimulator rBBX-01, INO-1001, Inodiftagene Vixteplasmid, iNOS Dimerization Inhibitor ASP9853, Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01, Inosine Monophosphate Dehydrogenase Inhibitor AVN944, Inositol, Inotuzumab Ozogamicin, Inproquone, Integrin alpha-2 Inhibitor E7820, Integrin Receptor Antagonist GLPG0187, Interferon, Interferon Alfa-2B, Interferon Alfa-N1, Interferon Alfa-N3, Interferon Alfacon-1, Interferon Beta-1A, Interferon Gamma-1b, Interferon-gamma-expressing Adenovirus Vaccine ASN-002, Interleukin Therapy, Interleukin-12-Fc Fusion Protein DF6002, Interleukin-15 Agonist Fusion Protein SHR1501, Interleukin-15 Fusion Protein BJ-001, Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306, Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101, Interleukin-2 Liposome, Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230, Intetumumab, Intiquinatine, Intoplicine, Inulin, Iobenguane I-131, Iodine I 124 Monoclonal Antibody A33, Iodine I 124 Monoclonal Antibody M5A, Iodine I 125-Anti-EGFR-425 Monoclonal Antibody, Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP, Iodine I 131 Apamistamab, Iodine I 131 Derlotuximab Biotin, Iodine I 131 Ethiodized Oil, Iodine I 131 IPA, Iodine I 131 MIP-1095, Iodine I 131 Monoclonal Antibody 81C6, Iodine I 131 Monoclonal Antibody BC8, Iodine I 131 Monoclonal Antibody CC49-deltaCH2, Iodine I 131 Monoclonal Antibody F16SIP, Iodine I 131 Monoclonal Antibody G-250, Iodine I 131 Monoclonal Antibody muJ591, Iodine I 131 Omburtamab, Iodine I 131 Rituximab, Iodine I 131 Tenatumomab, Iodine I 131 TM-601, Iodine I 131 Tositumomab, Iodine I-131, Ioflubenzamide I-131, Ionomycin, Ipafricept, Ipatasertib, Ipilimumab, Ipomeanol, Iproplatin, iPSC-derived CD16-expressing Natural Killer Cells FT516, iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596, iPSC-derived Natural Killer Cells FT500, IRAK4 Inhibitor CA-4948, Iratumumab, Iridium Ir 192, Irinotecan, Irinotecan Hydrochloride, Irinotecan Sucrosofate, Irinotecan-Eluting Beads, Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet, Irofulven, Iroplact, Irosustat, Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130, Isatuximab, Iso-fludelone, Isobrucein B, Isocoumarin NM-3, Isotretinoin, Ispinesib, Ispinesib Mesylate, ISS 1018 CpG Oligodeoxynucleotide, Istiratumab, Itacitinib, Itacitinib Adipate, ITK Inhibitor CPI-818, Itraconazole, Itraconazole Dispersion In Polymer Matrix, Ivaltinostat, Ivosidenib, Ivuxolimab, Ixabepilone, Ixazomib, Ixazomib Citrate, JAK Inhibitor, JAK Inhibitor INCB047986, JAK1 Inhibitor AZD4205, JAK1 Inhibitor INCB052793, JAK2 Inhibitor AZD1480, JAK2 Inhibitor BMS-911543, JAK2 Inhibitor XL019, JAK2/Src Inhibitor NS-018, Jin Fu Kang, JNK Inhibitor CC-401, Kanglaite, Kanitinib, Ketoconazole, Ketotrexate, KRAS G12C Inhibitor GDC-6036, KRAS G12C Inhibitor LY3499446, KRAS G12C Inhibitor MRTX849, KRAS Mutant-targeting AMG 510, KRAS-MAPK Signaling Pathway Inhibitor JAB-3312, KRASG12C Inhibitor JNJ-74699157, KRN5500, KSP Inhibitor AZD4877, KSP Inhibitor SB-743921, Kunecatechins Ointment, L-Gossypol, L-methylfolate, Labetuzumab Govitecan, Lactoferrin-derived Lytic Peptide LTX-315, Lacutamab, Ladiratuzumab Vedotin, Ladirubicin, Laetrile, LAIR-2 Fusion Protein NC410, Landogrozumab, Laniquidar, Lanreotide Acetate, Lapachone, Lapatinib, Lapatinib Ditosylate, Laprituximab Emtansine, Lapuleucel-T, Laromustine, Larotaxel, Larotinib Mesylate, Larotrectinib, Larotrectinib Sulfate, Lavendustin A, Lazertinib, Lead Pb 212 TCMC-trastuzumab, Lefitolimod, Leflunomide, Lenalidomide, Lenalidomide Analog KPG-121, Lentinan, Lenvatinib, Lenvatinib Mesylate, Lenzilumab, Lerociclib, Lestaurtinib, Letetresgene Autoleucel, Letolizumab, Letrozole, Leucovorin, Leucovorin Calcium, Leuprolide, Leuprolide Acetate, Leuprolide Mesylate Injectable Suspension, Leurubicin, Levetiracetam, Levoleucovorin Calcium, Levothyroxine, Levothyroxine Sodium, Lexatumumab, Lexibulin, Liarozole, Liarozole Fumarate, Liarozole Hydrochloride, Licartin, Licorice, Lifastuzumab Vedotin, Lifileucel, Lifirafenib, Light-activated AU-011, Light-Emitting Oncolytic Vaccinia Virus GL-ONC1, Lilotomab, Limonene; (+)-, Limonene; (+/-)-, Linifanib, Linoleyl Carbonate-Paclitaxel, Linperlisib, Linrodostat, Linsitinib, Lintuzumab, Liothyronine I-131, Liothyronine Sodium, Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1, Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191, Lipid Nanoparticle Encapsulated OX40L mRNA-2416, Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006, Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752, Liposomal Bcl-2 Antisense Oligonucleotide BP1002, Liposomal c-raf Antisense Oligonucleotide, Liposomal Curcumin, Liposomal Cytarabine, Liposomal Daunorubicin Citrate, Liposomal Docetaxel, Liposomal Eribulin Mesylate, Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101, Liposomal Irinotecan, Liposomal Mitoxantrone Hydrochloride, Liposomal MUC1/PET-lipid A Vaccine ONT-10, Liposomal NDDP, Liposomal Rhenium Re 186, Liposomal SN-38, Liposomal Topotecan FF-10850, Liposomal Vinorelbine, Liposomal Vinorelbine Tartrate, Liposome, Liposome-encapsulated Daunorubicin-Cytarabine, Liposome-Encapsulated Doxorubicin Citrate, Liposome-encapsulated miR-34 Mimic MRX34, Liposome-encapsulated OSI-7904, Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94, Liposome-encapsulated TAAs mRNA Vaccine W_ova1, Lirilumab, Lisavanbulin, Lisocabtagene Maraleucel, Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142, Litronesib, Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809, Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207, Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623, Liver X Receptor beta Agonist RGX-104, Lm-tLLO-neoantigens Vaccine ADXS-NEO, LMB-1 Immunotoxin, LMB-2 Immunotoxin, LMB-7 Immunotoxin, LMB-9 Immunotoxin, LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164, LMP-2:340-349 Peptide Vaccine, LMP-2:419-427 Peptide Vaccine, LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes, LMP7 Inhibitor M3258, Lobaplatin, Lodapolimab, Lometrexol, Lometrexol Sodium, Lomustine, Lonafarnib, Loncastuximab Tesirine, Long Peptide Vaccine 7, Long-acting Release Pasireotide, Lontucirev, Lorlatinib, Lorukafusp alfa, Lorvotuzumab Mertansine, Losatuxizumab Vedotin, Losoxantrone, Losoxantrone Hydrochloride, Lovastatin, LOXL2 Inhibitor PAT-1251, LRP5 Antagonist BI 905681, LRP5/6 Antagonist BI 905677, LSD1 Inhibitor CC-90011, LSD1 Inhibitor GSK2879552, LSD1 Inhibitor IMG-7289, LSD1 Inhibitor RO7051790, LSD1 Inhibitor SYHA1807, Lucanthone, Lucatumumab, Lucitanib, Luminespib, Luminespib Mesylate, Lumretuzumab, Lung-targeted Immunomodulator QBKPN, Lupartumab Amadotin, Lurbinectedin, Lurtotecan, Lurtotecan Liposome, Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1, Lutetium Lu 177 DOTA-biotin, Lutetium Lu 177 DOTA-N3-CTT1403, Lutetium Lu 177 DOTA-Tetulomab, Lutetium Lu 177 Dotatate, Lutetium Lu 177 Lilotomab-satetraxetan, Lutetium Lu 177 Monoclonal Antibody CC49, Lutetium Lu 177 Monoclonal Antibody J591, Lutetium Lu 177 PP-F11N, Lutetium Lu 177 Satoreotide Tetraxetan, Lutetium Lu 177-DOTA-EB-TATE, Lutetium Lu 177-DTPA-omburtamab, Lutetium Lu 177-Edotreotide, Lutetium Lu 177-NeoB, Lutetium Lu 177-PSMA-617, Lutetium Lu-177 Capromab, Lutetium Lu-177 Girentuximab, Lutetium Lu-177 PSMA-R2, Lutetium Lu-177 Rituximab, LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1, Lyophilized Black Raspberry Lozenge, Lyophilized Black Raspberry Saliva Substitute, Lysine-specific Demethylase 1 Inhibitor INCB059872, Lyso-Thermosensitive Liposome Doxorubicin, Maackia amurensis Seed Lectin, Macimorelin, Macitentan, Macrocycle-bridged STING Agonist E7766, Maekmoondong-tang, Mafosfamide, MAGE-10.A2, MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells, MAGE-A3 Multipeptide Vaccine GL-0817, MAGE-A3 Peptide Vaccine, MAGE-A3-specific Immunotherapeutic GSK 2132231A, MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201, Magnesium Valproate, Magrolimab, MALT1 Inhibitor JNJ-67856633, Manelimab, Mannosulfan, Mannosylerythritol Lipid, Mapatumumab, Maraba Oncolytic Virus Expressing Mutant HPV E6/E7, Marcellomycin, MARCKS Protein Inhibitor BIO-11006, Margetuximab, Marimastat, Marizomib, Masitinib Mesylate, Masoprocol, MAT2A Inhibitor AG-270, Matrix Metalloproteinase Inhibitor MMI270, Matuzumab, Mavelertinib, Mavorixafor, Maytansine, MCL-1 Inhibitor ABBV-467, MCL-1 Inhibitor AMG 176, MCL-1 inhibitor AMG 397, Mcl-1 Inhibitor AZD5991, Mcl-1 Inhibitor MIK665, MDM2 Antagonist ASTX295, MDM2 Antagonist RO5045337, MDM2 Antagonist RO6839921, MDM2 Inhibitor AMG-232, MDM2 Inhibitor AMGMDS3, MDM2 Inhibitor BI 907828, MDM2 Inhibitor KRT-232, MDM2/MDMX Inhibitor ALRN-6924, MDR Modulator CBT-1, Mechlorethamine, Mechlorethamine Hydrochloride, Mechlorethamine Hydrochloride Gel, Medorubicin, Medroxyprogesterone, Medroxyprogesterone Acetate, Megestrol Acetate, MEK 1/2 Inhibitor AS703988/MSC2015103B, MEK 1/2 Inhibitor FCN-159, MEK Inhibitor AZD8330, MEK Inhibitor CI-1040, MEK inhibitor CS3006, MEK Inhibitor GDC-0623, MEK Inhibitor HL-085, MEK Inhibitor PD0325901, MEK Inhibitor RO4987655, MEK Inhibitor SHR 7390, MEK Inhibitor TAK-733, MEK Inhibitor WX-554, MEK-1/MEKK-1 Inhibitor E6201, MEK/Aurora Kinase Inhibitor BI 847325, Melanoma Monoclonal Antibody hIgG2A, Melanoma TRP2 CTL Epitope Vaccine SCIB1, Melapuldencel-T, MELK Inhibitor OTS167, Melphalan, Melphalan Flufenamide, Melphalan Hydrochloride, Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex, Membrane-Disrupting Peptide EP-100, Menatetrenone, Menin-MLL Interaction Inhibitor SNDX-5613, Menogaril, Merbarone, Mercaptopurine, Mercaptopurine Anhydrous, Mercaptopurine Oral Suspension, Merestinib, Mesna, Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536, MET Kinase Inhibitor OMO-1, MET Tyrosine Kinase Inhibitor BMS-777607, MET Tyrosine Kinase Inhibitor EMD 1204831, MET Tyrosine Kinase Inhibitor PF-04217903, MET Tyrosine Kinase Inhibitor SAR125844, MET Tyrosine Kinase Inhibitor SGX523, MET x MET Bispecific Antibody REGN5093, Metamelfalan, MetAP2 Inhibitor APL-1202, MetAP2 Inhibitor SDX-7320, Metarrestin, Metatinib Tromethamine, Metformin, Metformin Hydrochloride, Methanol Extraction Residue of BCG, Methazolamide, Methionine Aminopeptidase 2 Inhibitor M8891, Methionine Aminopeptidase 2 Inhibitor PPI-2458, Methotrexate, Methotrexate Sodium, Methotrexate-E Therapeutic Implant, Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles, Methoxsalen, Methoxyamine, Methoxyamine Hydrochloride, Methyl-5-Aminolevulinate Hydrochloride Cream, Methylcantharidimide, Methylmercaptopurine Riboside, Methylprednisolone, Methylprednisolone Acetate, Methylprednisolone Sodium Succinate, Methylselenocysteine, Methyltestosterone, Metoprine, Mevociclib, Mezagitamab, Mibefradil, Mibefradil Dihydrochloride, Micellar Nanoparticle-encapsulated Epirubicin, Micro Needle Array-Doxorubicin, Microbiome GEN-001, Microbiome-derived Peptide Vaccine EO2401, Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300, Microtubule Inhibitor SCB01A, Midostaurin, Mifamurtide, Mifepristone, Milademetan Tosylate, Milataxel, Milatuzumab, Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110, Milciclib Maleate, Milk Thistle, Miltefosine, Minretumomab, Mipsagargin, Miptenalimab, Mirabegron, Miransertib, Mirdametinib, Mirvetuximab Soravtansine, Mirzotamab Clezutoclax, Misonidazole, Mistletoe Extract, Mitazalimab, Mitindomide, Mitobronitol, Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101, Mitoclomine, Mitoflaxone, Mitoguazone, Mitoguazone Dihydrochloride, Mitolactol, Mitomycin, Mitomycin A, Mitomycin B, Mitomycin C Analog KW-2149, Mitosis Inhibitor T 1101 Tosylate, Mitotane, Mitotenamine, Mitoxantrone, Mitoxantrone Hydrochloride, Mitozolomide, Mivavotinib, Mivebresib, Mivobulin, Mivobulin Isethionate, Mixed Bacteria Vaccine, MK0731, MKC-1, MKNK1 Inhibitor BAY 1143269, MMP Inhibitor S-3304, MNK1/2 Inhibitor ETC-1907206, Mobocertinib, Mocetinostat, Modakafusp Alfa, Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208, Modified Vitamin D Binding Protein Macrophage Activator EF-022, Modotuximab, MOF Compound RiMO-301, Mofarotene, Mogamulizumab, Molibresib, Molibresib Besylate, Momelotinib, Monalizumab, Monocarboxylate Transporter 1 Inhibitor AZD3965, Monoclonal Antibody 105AD7 Anti-idiotype Vaccine, Monoclonal Antibody 11D10, Monoclonal Antibody 11D10 Anti-Idiotype Vaccine, Monoclonal Antibody 14G2A, Monoclonal Antibody 1F5, Monoclonal Antibody 3622W94, Monoclonal Antibody 3F8, Monoclonal Antibody 3H1 Anti-Idiotype Vaccine, Monoclonal Antibody 4B5 Anti-Idiotype Vaccine, Monoclonal Antibody 7C11, Monoclonal Antibody 81C6, Monoclonal Antibody A1G4 Anti-Idiotype Vaccine, Monoclonal Antibody A27.15, Monoclonal Antibody A33, Monoclonal Antibody AbGn-7, Monoclonal Antibody AK002, Monoclonal Antibody ASP1948, Monoclonal Antibody CAL, Monoclonal Antibody CC49-delta CH2, Monoclonal Antibody CEP-37250/KHK2804, Monoclonal Antibody D6.12, Monoclonal Antibody E2.3, Monoclonal Antibody F19, Monoclonal Antibody GD2 Anti-Idiotype Vaccine, Monoclonal Antibody HeFi-1, Monoclonal Antibody Hu3S193, Monoclonal Antibody HuAFP31, Monoclonal Antibody HuHMFG1, Monoclonal Antibody huJ591, Monoclonal Antibody HuPAM4, Monoclonal Antibody IMMU-14, Monoclonal Antibody L6, Monoclonal Antibody Lym-1, Monoclonal Antibody m170, Monoclonal Antibody Me1-14 F(ab')2, Monoclonal Antibody muJ591, Monoclonal Antibody MX35 F(ab')2, Monoclonal Antibody NEO-201, Monoclonal Antibody R24, Monoclonal Antibody RAV12, Monoclonal Antibody SGN-14, Monoclonal Antibody TRK-950, Monoclonal Microbial EDP1503, Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100, Monomethyl Auristatin E, Morinda Citrifolia Fruit Extract, Morpholinodoxorubicin, Mosedipimod, Mosunetuzumab, Motesanib, Motesanib Diphosphate, Motexafin Gadolinium, Motexafin Lutetium, Motixafortide, Motolimod, MOv-gamma Chimeric Receptor Gene, Moxetumomab Pasudotox, Mps1 Inhibitor BAY 1217389, Mps1 Inhibitor BOS172722, mRNA-based Personalized Cancer Vaccine mRNA-4157, mRNA-based Personalized Cancer Vaccine NCI-4650, mRNA-based TriMix Melanoma Vaccine ECI-006, mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902, mRNA-derived KRAS-targeted Vaccine V941, mRNA-derived Lung Cancer Vaccine BI 1361849, mRNA-Derived Prostate Cancer Vaccine CV9103, mRNA-derived Prostate Cancer Vaccine CV9104, MTF-1 Inhibitor APTO-253 HCl, mTOR Inhibitor GDC-0349, mTOR Kinase Inhibitor AZD8055, mTOR Kinase Inhibitor CC-223, mTOR Kinase Inhibitor OSI-027, mTOR Kinase Inhibitor PP242, mTOR1/2 Kinase Inhibitor ME-344, mTORC 1/2 Inhibitor LXI-15029, mTORC1/2 Kinase Inhibitor BI 860585, mTORC1/mTORC2/DHFR Inhibitor ABTL0812, MUC-1/WT1 Peptide-primed Autologous Dendritic Cells, MUC1-targeted Peptide GO-203-2C, Mucoadhesive Paclitaxel Formulation, Multi-AGC Kinase Inhibitor AT13148, Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200, Multi-epitope HER2 Peptide Vaccine H2NVAC, Multi-epitope HER2 Peptide Vaccine TPIV100, Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107, Multi-kinase Inhibitor TPX-0022, Multi-kinase Inhibitor XL092, Multi-mode Kinase Inhibitor EOC317, Multi-neo-epitope Vaccine OSE 2101, Multifunctional/Multitargeted Anticancer Agent OMN54, Multikinase Inhibitor 4SC-203, Multikinase Inhibitor AEE788, Multikinase Inhibitor AT9283, Multikinase Inhibitor SAR103168, Multipeptide Vaccine S-588210, Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327, Muparfostat, Mureletecan, Murizatoclax, Muscadine Grape Extract, Mutant IDH1 Inhibitor DS-1001, Mutant p53 Activator COTI-2, Mutant-selective EGFR Inhibitor PF-06459988, MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP, MVA-BN Smallpox Vaccine, MVA-FCU1 TG4023, MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1, MYC-targeting siRNA DCR-MYC, Mycobacterium tuberculosis Arabinomannan Z-100, Mycobacterium w, Mycophenolic Acid, N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea, N-dihydrogalactochitosan, N-Methylformamide, N;N-Dibenzyl Daunomycin, NA17-A Antigen, NA17.A2 Peptide Vaccine, Nab-paclitaxel, Nab-paclitaxel/Rituximab-coated Nanoparticle AR160, Nadofaragene Firadenovec, Nagrestipen, Namirotene, Namodenoson, NAMPT Inhibitor OT-82, Nanafrocin, Nanatinostat, Nanocell-encapsulated miR-16-based microRNA Mimic, Nanoparticle Albumin-Bound Docetaxel, Nanoparticle Albumin-Bound Rapamycin, Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404, Nanoparticle Paclitaxel Ointment SOR007, Nanoparticle-based Paclitaxel Suspension, Nanoparticle-encapsulated Doxorubicin Hydrochloride, Nanoscale Coordination Polymer Nanoparticles CPI-100, Nanosomal Docetaxel Lipid Suspension, Napabucasin, Naphthalimide Analogue UNBS5162, Naptumomab Estafenatox, Naquotinib, Naratuximab Emtansine, Narnatumab, Natalizumab, Natural IFN-alpha OPC-18, Natural Killer Cells ZRx101, Navarixin, Navicixizumab, Navitoclax, Navoximod, Navy Bean Powder, Naxitamab, Nazartinib, ncmtRNA Oligonucleotide Andes-1537, Necitumumab, Nedaplatin, NEDD8 Activating Enzyme E1 Inhibitor TAS4464, Nedisertib, Nelarabine, Nelipepimut-S, Nelipepimut-S Plus GM-CSF Vaccine, Nemorubicin, Nemorubicin Hydrochloride, Neoantigen Vaccine GEN-009, Neoantigen-based Glioblastoma Vaccine, Neoantigen-based Melanoma-Poly-ICLC Vaccine, Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine, Neoantigen-based Therapeutic Cancer Vaccine GRT-C903, Neoantigen-based Therapeutic Cancer Vaccine GRT-R904, Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017, Neratinib, Neratinib Maleate, Nesvacumab, NG-nitro-L-arginine, Niacinamide, Niclosamide, Nicotinamide Riboside, Nidanilimab, Nifurtimox, Nilotinib, Nilotinib Hydrochloride Anhydrous, Nilotinib Hydrochloride Monohydrate, Nilutamide, Nimesulide-Hyaluronic Acid Conjugate CA102N, Nimodipine, Nimotuzumab, Nimustine, Nimustine Hydrochloride, Ningetinib Tosylate, Nintedanib, Niraparib, Niraparib Tosylate Monohydrate, Nirogacestat, Nitric Oxide-Releasing Acetylsalicylic Acid Derivative, Nitrogen Mustard Prodrug PR-104, Nitroglycerin Transdermal Patch, Nivolumab, NLRP3 Agonist BMS-986299, Nocodazole, Nogalamycin, Nogapendekin Alfa, Nolatrexed Dihydrochloride, Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201, Norgestrel, North American Ginseng Extract AFX-2, Nortopixantrone, Noscapine, Noscapine Hydrochloride, Not Otherwise Specified, Notch Signaling Inhibitor PF-06650808, Notch Signaling Pathway Inhibitor MK0752, NTRK/ROS1 Inhibitor DS-6051b, Nucleolin Antagonist IPP-204106N, Nucleoside Analog DFP-10917, Nucleotide Analog Prodrug NUC-3373, Nucleotide Analogue GS 9219, Numidargistat, Nurulimab, Nutlin-3a, Nutraceutical TBL-12, NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611, NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301, NY-ESO-1/GLA-SE Vaccine ID-G305, NY-ESO-B, O-Chloroacetylcarbamoylfumagillol, O6-Benzylguanine, Obatoclax Mesylate, Obinutuzumab, Oblimersen Sodium, Ocaratuzumab, Ocrelizumab, Octreotide, Octreotide Acetate, Octreotide Pamoate, Odronextamab, Ofatumumab, Ofranergene Obadenovec, Oglufanide Disodium, Olaparib, Olaptesed Pegol, Olaratumab, Oleandrin, Oleclumab, Oligo-fucoidan, Oligonucleotide SPC2996, Olinvacimab, Olivomycin, Olmutinib, Oltipraz, Olutasidenib, Olvimulogene Nanivacirepvec, Omacetaxine Mepesuccinate, Ombrabulin, Omipalisib, Onalespib, Onalespib Lactate, Onartuzumab, Onatasertib, Oncolytic Adenovirus Ad5-DNX-2401, Oncolytic Adenovirus ORCA-010, Oncolytic Herpes Simplex Virus-1 ONCR-177, Oncolytic HSV-1 C134, Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011, Oncolytic HSV-1 G207, Oncolytic HSV-1 NV1020, Oncolytic HSV-1 rQNestin34.5v.2, Oncolytic HSV-1 rRp450, Oncolytic HSV1716, Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein, Oncolytic Newcastle Disease Virus MEDI5395, Oncolytic Newcastle Disease Virus MTH-68H, Oncolytic Newcastle Disease Virus Strain PV701, Oncolytic Virus ASP9801, Oncolytic Virus RP1, Ondansetron Hydrochloride, Ontorpacept, Ontuxizumab, Onvansertib, Onvatilimab, Opaganib, OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule, Opioid Growth Factor, Opolimogene Capmilisbac, Oportuzumab Monatox, Oprozomib, Opucolimab, Oral Aminolevulinic Acid Hydrochloride, Oral Azacitidine, Oral Cancer Vaccine V3-OVA, Oral Docetaxel, Oral Fludarabine Phosphate, Oral Hsp90 Inhibitor IPI-493, Oral Ixabepilone, Oral Microencapsulated Diindolylmethane, Oral Milataxel, Oral Myoma Vaccine V3-myoma, Oral Pancreatic Cancer Vaccine V3-P, Oral Picoplatin, Oral Sodium Phenylbutyrate, Oral Topotecan Hydrochloride, Orantinib, Oraxol, Oregovomab, Orelabrutinib, Ormaplatin, Ortataxel, Orteronel, Orvacabtagene Autoleucel, Osilodrostat, Osimertinib, Other, Otlertuzumab, Ovapuldencel-T, Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006, Ovine Submaxillary Mucin, OX40L-expressing Oncolytic Adenovirus DNX-2440, Oxaliplatin, Oxaliplatin Eluting Beads, Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome, Oxcarbazepine, Oxeclosporin, Oxidative Phosphorylation Inhibitor IACS-010759, Oxidative Phosphorylation Inhibitor IM156, Oxidopamine, OxPhos Inhibitor VLX600, Ozarelix, P-cadherin Antagonist PF-03732010, P-cadherin Inhibitor PCA062, P-cadherin-targeting Agent PF-06671008, P-p68 Inhibitor RX-5902, P-TEFb Inhibitor BAY1143572, p300/CBP Bromodomain Inhibitor CCS1477, p38 MAPK Inhibitor LY3007113, p53 Peptide Vaccine MPS-128, p53-HDM2 Interaction Inhibitor MI-773, p53-HDM2 Protein-protein Interaction Inhibitor APG-115, p53/HDM2 Interaction Inhibitor CGM097, p70S6K Inhibitor LY2584702, p70S6K/Akt Inhibitor MSC2363318A, p97 Inhibitor CB-5083, p97 Inhibitor CB-5339, p97 Inhibitor CB-5339 Tosylate, Paclitaxel, Paclitaxel Ceribate, Paclitaxel Injection Concentrate for Nanodispersion, Paclitaxel Liposome, Paclitaxel Poliglumex, Paclitaxel Polymeric Micelle Formulation NANT-008, Paclitaxel PPE Microspheres, Paclitaxel Trevatide, Paclitaxel Vitamin E-Based Emulsion, Paclitaxel-Loaded Polymeric Micelle, Pacmilimab, Pacritinib, Padeliporfin, Padoporfin, PAK4 Inhibitor PF-03758309, PAK4/NAMPT Inhibitor KPT-9274, Palbociclib, Palbociclib Isethionate, Palifosfamide, Palifosfamide Tromethamine, Palladium Pd-103, Palonosetron Hydrochloride, Pamidronate Disodium, Pamidronic Acid, Pamiparib, Pamrevlumab, pan FGFR Inhibitor PRN1371, Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514, Pan-AKT Inhibitor ARQ751, Pan-AKT Kinase Inhibitor GSK690693, Pan-FGFR Inhibitor LY2874455, Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806, pan-HER Kinase Inhibitor AC480, Pan-IDH Mutant Inhibitor AG-881, Pan-KRAS Inhibitor BI 1701963, Pan-Mutant-IDH1 Inhibitor Bay-1436032, Pan-mutation-selective EGFR Inhibitor CLN-081, pan-PI3K Inhibitor CLR457, pan-PI3K/mTOR Inhibitor SF1126, Pan-PIM Inhibitor INCB053914, pan-PIM Kinase Inhibitor AZD1208, pan-PIM Kinase Inhibitor NVP-LGB-321, pan-RAF Inhibitor LXH254, Pan-RAF Inhibitor LY3009120, pan-RAF Kinase Inhibitor CCT3833, pan-RAF Kinase Inhibitor TAK-580, Pan-RAR Agonist/AP-1 Inhibitor LGD 1550, Pan-TRK Inhibitor NOV1601, Pan-TRK Inhibitor ONO-7579, Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981, Pancratistatin, Panitumumab, Panobinostat, Panobinostat Nanoparticle Formulation MTX110, Panulisib, Paricalcitol, PARP 1/2 Inhibitor IMP4297, PARP 1/2 Inhibitor NOV1401, PARP Inhibitor AZD2461, PARP Inhibitor CEP-9722, PARP Inhibitor E7016, PARP Inhibitor NMS-03305293, PARP-1/2 Inhibitor ABT-767, PARP/Tankyrase Inhibitor 2X-121, PARP7 Inhibitor RBN-2397, Parsaclisib, Parsaclisib Hydrochloride, Parsatuzumab, Partially Engineered T-regulatory Cell Donor Graft TRGFT-201, Parvovirus H-1, Pasireotide, Pasotuxizumab, Patidegib, Patidegib Topical Gel, Patritumab, Patritumab Deruxtecan, Patupilone, Paxalisib, Pazopanib, Pazopanib Hydrochloride, pbi-shRNA STMN1 Lipoplex, PBN Derivative OKN-007, PCNU, PD-1 Directed Probody CX-188, PD-1 Inhibitor, PD-L1 Inhibitor GS-4224, PD-L1 Inhibitor INCB086550, PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480, PD-L1/PD-L2/VISTA Antagonist CA-170, PDK1 Inhibitor AR-12, pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0, PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1, PEG-interleukin-2, PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1, PEG-Proline-Interferon Alfa-2b, Pegargiminase, Pegaspargase, Pegdinetanib, Pegfilgrastim, Pegilodecakin, Peginterferon Alfa-2a, Peginterferon Alfa-2b, Pegvisomant, Pegvorhyaluronidase Alfa, Pegylated Deoxycytidine Analogue DFP-14927, Pegylated Interferon Alfa, Pegylated Liposomal Belotecan, Pegylated Liposomal Doxorubicin Hydrochloride, Pegylated Liposomal Irinotecan, Pegylated Liposomal Mitomycin C Lipid-based Prodrug, Pegylated Liposomal Mitoxantrone Hydrochloride, Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010, Pegylated Paclitaxel, Pegylated Recombinant Human Arginase I BCT-100, Pegylated Recombinant Human Hyaluronidase PH20, Pegylated Recombinant Interleukin-2 THOR-707, Pegylated Recombinant L-asparaginase Erwinia chrysanthemi, Pegylated SN-38 Conjugate PLX038, Pegzilarginase, Pelabresib, Pelareorep, Peldesine, Pelitinib, Pelitrexol, Pembrolizumab, Pemetrexed, Pemetrexed Disodium, Pemigatinib, Pemlimogene Merolisbac, Penberol, Penclomedine, Penicillamine, Pentamethylmelamine, Pentamustine, Pentostatin, Pentoxifylline, PEOX-based Polymer Encapsulated Paclitaxel FID-007, PEP-3-KLH Conjugate Vaccine, Pepinemab, Peplomycin, Peplomycin Sulfate, Peposertib, Peptichemio, Peptide 946 Melanoma Vaccine, Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine, Peretinoin, Perflenapent Emulsion, Perfosfamide, Perifosine, Perillyl Alcohol, Personalized ALL-specific Multi-HLA-binding Peptide Vaccine, Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC, Personalized Cancer Vaccine RO7198457, Personalized Neoantigen DNA Vaccine GNOS-PV01, Personalized Neoantigen DNA Vaccine GNOS-PVO2, Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01, Personalized Neoepitope Yeast Vaccine YE-NEO-001, Personalized Peptide Cancer Vaccine NEO-PV-01, Pertuzumab, Pevonedistat, Pexastimogene Devacirepvec, Pexidartinib, Pexmetinib, PGG Beta-Glucan, PGLA/PEG Copolymer-Based Paclitaxel, PH20 Hyaluronidase-expressing Adenovirus VCN-01, Phaleria macrocarpa Extract DLBS-1425, Pharmacological Ascorbate, Phellodendron amurense Bark Extract, Phenesterin, Phenethyl Isothiocyanate, Phenethyl Isothiocyanate-containing Watercress Juice, Phenyl Acetate, Phenytoin Sodium, Phosphaplatin PT-112, Phosphatidylcholine-Bound Silybin, Phospholipid Ether-drug Conjugate CLR 131, Phosphoramide Mustard, Phosphorodiamidate Morpholino Oligomer AVI-4126, Phosphorus P-32, Photodynamic Compound TLD-1433, Photosensitizer LUZ 11, Phytochlorin Sodium-Polyvinylpyrrolidone Complex, PI3K Alpha/Beta Inhibitor BAY1082439, PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate, PI3K Inhibitor ACP-319, PI3K Inhibitor BGT226, PI3K Inhibitor GDC-0084, PI3K Inhibitor GDC0077, PI3K Inhibitor GSK1059615, PI3K Inhibitor WX-037, PI3K Inhibitor ZSTK474, PI3K p110beta/delta Inhibitor KA2237, PI3K-alpha Inhibitor MEN1611, PI3K-beta Inhibitor GSK2636771, PI3K-beta Inhibitor SAR260301, PI3K-delta Inhibitor AMG 319, PI3K-delta Inhibitor HMPL 689, PI3K-delta Inhibitor INCB050465, PI3K-delta Inhibitor PWT143, PI3K-delta Inhibitor SHC014748M, PI3K-delta Inhibitor YY-20394, PI3K-gamma Inhibitor IPI-549, PI3K/BET Inhibitor LY294002, PI3K/mTOR Kinase Inhibitor DS-7423, PI3K/mTOR Kinase Inhibitor PF-04691502, PI3K/mTOR Kinase Inhibitor VS-5584, PI3K/mTOR Kinase Inhibitor WXFL10030390, PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170, PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901, PI3Ka/mTOR Inhibitor PKI-179, PI3Kalpha Inhibitor AZD8835, PI3Kbeta Inhibitor AZD8186, PI3Kdelta Inhibitor GS-9901, Pibenzimol, Pibrozelesin, Pibrozelesin Hydrobromide, Picibanil, Picoplatin, Picrasinoside H, Picropodophyllin, Pictilisib, Pictilisib Bismesylate, Pidilizumab, Pilaralisib, PIM Kinase Inhibitor LGH447, PIM Kinase Inhibitor SGI-1776, PIM Kinase Inhibitor TP-3654, PIM/FLT3 Kinase Inhibitor SEL24, Pimasertib, Pimitespib, Pimurutamab, Pinatuzumab Vedotin, Pingyangmycin, Pinometostat, Pioglitazone, Pioglitazone Hydrochloride, Pipendoxifene, Piperazinedione, Piperine Extract (Standardized), Pipobroman, Piposulfan, Pirarubicin, Pirarubicin Hydrochloride, Pirfenidone, Piritrexim, Piritrexim Isethionate, Pirotinib, Piroxantrone, Piroxantrone Hydrochloride, Pixantrone, Pixantrone Dimaleate, Pixatimod, PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231, PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521, PKC-beta Inhibitor MS-553, Placebo, Pladienolide Derivative E7107, Plamotamab, Plasmid DNA Vaccine pING-hHER3FL, Platinum, Platinum Acetylacetonate-Titanium Dioxide Nanoparticles, Platinum Compound, Plevitrexed, Plicamycin, Plinabulin, Plitidepsin, Plk1 Inhibitor BI 2536, PLK1 Inhibitor CYC140, PLK1 Inhibitor TAK-960, Plocabulin, Plozalizumab, pNGVL4a-CRT-E6E7L2 DNA Vaccine, pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2, Pol I Inhibitor CX5461, Polatuzumab Vedotin, Polidocanol, Poliglusam, Polo-like Kinase 1 Inhibitor GSK461364, Polo-like Kinase 1 Inhibitor MK1496, Polo-like Kinase 1 Inhibitor NMS-1286937, Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate, Poly-alendronate Dextran-Guanidine Conjugate, Poly-gamma Glutamic Acid, Polyamine Analog SL11093, Polyamine Analogue PG11047, Polyamine Analogue SBP-101, Polyamine Transport Inhibitor AMXT-1501 Dicaprate, Polyandrol, Polyethylene Glycol Recombinant Endostatin, Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318, Polymer-conjugated IL-15 Receptor Agonist NKTR-255, Polymer-encapsulated Luteolin Nanoparticle, Polymeric Camptothecin Prodrug XMT-1001, Polypodium leucotomos Extract, Polysaccharide-K, Polysialic Acid, Polyunsaturated Fatty Acid, Polyvalent Melanoma Vaccine, Pomalidomide, Pomegranate Juice, Pomegranate Liquid Extract, Ponatinib, Ponatinib Hydrochloride, Porcupine Inhibitor CGX1321, Porcupine Inhibitor ETC-1922159, Porcupine Inhibitor RXC004, Porcupine Inhibitor WNT974, Porcupine Inhibitor XNW7201, Porfimer Sodium, Porfiromycin, Poziotinib, PPAR Alpha Antagonist TPST-1120, PR1 Leukemia Peptide Vaccine, Pracinostat, Pralatrexate, Pralsetinib, Praluzatamab Ravtansine, PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701, Pravastatin Sodium, Prednimustine, Prednisolone, Prednisolone Acetate, Prednisolone Sodium Phosphate, Prednisone, Prexasertib, Prexigebersen, PRIMA-1 Analog APR-246, Prime Cancer Vaccine MVA-BN-CV301, Prinomastat, PRMT1 Inhibitor GSK3368715, PRMT5 Inhibitor JNJ-64619178, PRMT5 Inhibitor PRT811, Proapoptotic Sulindac Analog CP-461, Procarbazine, Procarbazine Hydrochloride, Procaspase Activating Compound-1 VO-100, Progestational IUD, Prohibitin-Targeting Peptide 1, Prolgolimab, Prostaglandin E2 EP4 Receptor Inhibitor AN0025, Prostaglandin E2 EP4 Receptor Inhibitor E7046, Prostate Cancer Vaccine ONY-P1, Prostate Health Cocktail Dietary Supplement, Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024, Protease-activated Anti-PD-L1 Antibody Prodrug CX-072, Protein Arginine Methyltransferase 5 Inhibitor GSK3326595, Protein Arginine Methyltransferase 5 Inhibitor PF-06939999, Protein Arginine Methyltransferase 5 Inhibitor PRT543, Protein Kinase C Inhibitor IDE196, Protein Phosphatase 2A Inhibitor LB-100, Protein Stabilized Liposomal Docetaxel Nanoparticles, Protein Tyrosine Kinase 2 Inhibitor IN10018, Proxalutamide, PSA/IL-2/GM-CSF Vaccine, PSA/PSMA DNA Plasmid INO-5150, Pseudoisocytidine, PSMA-targeted Docetaxel Nanoparticles BIND-014, PSMA-targeted Tubulysin B-containing Conjugate EC1169, PSMA/CD3 Tri-specific T-cell Activating Construct HPN424, PTEF-b/CDK9 Inhibitor BAY1251152, Pterostilbene, Pumitepa, Puquitinib, Puquitinib Mesylate, Puromycin, Puromycin Hydrochloride, PV-10, PVA Microporous Hydrospheres/Doxorubicin Hydrochloride, Pyrazinamide, Pyrazoloacridine, Pyridyl Cyanoguanidine CHS 828, Pyrotinib, Pyrotinib Dimaleate, Pyroxamide, Pyruvate Kinase Inhibitor TLN-232, Pyruvate Kinase M2 Isoform Activator TP-1454, Qilisheng Immunoregulatory Oral Solution, Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine, Quarfloxin, Quinacrine Hydrochloride, Quinine, Quisinostat, Quizartinib, R-(-)-Gossypol Acetic Acid, Rabusertib, Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88, Racotumomab, RAD51 Inhibitor CYT-0851, Radgocitabine, Radgocitabine Hydrochloride, Radioactive Iodine, Radiolabeled CC49, Radium Ra 223 Dichloride, Radium Ra 224-labeled Calcium Carbonate Microparticles, Radix Angelicae Sinensis/Radix Astragali Herbal Supplement, Radotinib Hydrochloride, Raf Kinase Inhibitor HM95573, RAF Kinase Inhibitor L-779450, RAF Kinase Inhibitor XL281, Ragifilimab, Ralaniten Acetate, Ralimetinib Mesylate, Raloxifene, Raloxifene Hydrochloride, Raltitrexed, Ramucirumab, Ranibizumab, Ranimustine, Ranolazine, Ranpirnase, RARalpha Agonist IRX5183, Ras Inhibitor, Ras Peptide ASP, Ras Peptide CYS, Ras Peptide VAL, Razoxane, Realgar-Indigo naturalis Formulation, Rebastinib Tosylate, Rebeccamycin, Rebimastat, Receptor Tyrosine Kinase Inhibitor R1530, Recombinant Adenovirus-p53 SCH-58500, Recombinant Anti-WT1 Immunotherapeutic GSK2302024A, Recombinant Bacterial Minicells VAX014, Recombinant Bispecific Single-Chain Antibody rM28, Recombinant CD40-Ligand, Recombinant Erwinia asparaginase JZP-458, Recombinant Erythropoietin, Recombinant Fas Ligand, Recombinant Fractalkine, Recombinant Granulocyte-Macrophage Colony-Stimulating Factor, Recombinant Human 6Ckine, Recombinant Human Adenovirus Type 5 H101, Recombinant Human Angiotensin Converting Enzyme 2 APN01, Recombinant Human Apolipoprotein(a) Kringle V MG1102, Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine, Recombinant Human Endostatin, Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine, Recombinant Human Papillomavirus 11-valent Vaccine, Recombinant Human Papillomavirus Bivalent Vaccine, Recombinant Human Papillomavirus Nonavalent Vaccine, Recombinant Human Plasminogen Kringle 5 Domain ABT 828, Recombinant Human TRAIL-Trimer Fusion Protein SCB-313, Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301, Recombinant Interferon, Recombinant Interferon Alfa, Recombinant Interferon Alfa-1b, Recombinant Interferon Alfa-2a, Recombinant Interferon Alfa-2b, Recombinant Interferon Alpha 2b-like Protein, Recombinant Interferon Beta, Recombinant Interferon Gamma, Recombinant Interleukin-12, Recombinant Interleukin-13, Recombinant Interleukin-18, Recombinant Interleukin-2, Recombinant Interleukin-6, Recombinant KSA Glycoprotein CO17-1A, Recombinant Leukocyte Interleukin, Recombinant Leukoregulin, Recombinant Luteinizing Hormone, Recombinant Macrophage Colony-Stimulating Factor, Recombinant MAGE-3.1 Antigen, Recombinant MIP1-alpha Variant ECI301, Recombinant Modified Vaccinia Ankara-5T4 Vaccine, Recombinant Oncolytic Poliovirus PVS-RIPO, Recombinant Platelet Factor 4, Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A, Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207, Recombinant Super-compound Interferon, Recombinant Thyroglobulin, Recombinant Thyrotropin Alfa, Recombinant Transforming Growth Factor-Beta, Recombinant Transforming Growth Factor-Beta-2, Recombinant Tumor Necrosis Factor-Alpha, Recombinant Tyrosinase-Related Protein-2, Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter, Redaporfin, Refametinib, Regorafenib, Relacorilant, Relatlimab, Relugolix, Remetinostat, Renal Cell Carcinoma Peptides Vaccine IMA901, Reparixin, Repotrectinib, Resiquimod, Resiquimod Topical Gel, Resistant Starch, Resminostat, Resveratrol, Resveratrol Formulation SRT501, RET Inhibitor DS-5010, RET Mutation/Fusion Inhibitor BLU-667, RET/SRC Inhibitor TPX-0046, Retaspimycin, Retaspimycin Hydrochloride, Retelliptine, Retifanlimab, Retinoic Acid Agent Ro 16-9100, Retinoid 9cUAB30, Retinol, Retinyl Acetate, Retinyl Palmitate, Retrovector Encoding Mutant Anti-Cyclin G1, Revdofilimab, Rexinoid NRX 194204, Rezivertinib, RFT5-dgA Immunotoxin IMTOX25, Rhenium Re 188 BMEDA-labeled Liposomes, Rhenium Re-186 Hydroxyethylidene Diphosphonate, Rhenium Re-188 Ethiodized Oil, Rhenium Re-188 Etidronate, Rhizoxin, RhoC Peptide Vaccine RV001V, Ribociclib, Ribociclib/Letrozole, Ribonuclease QBI-139, Ribosome-Inactivating Protein CY503, Ribozyme RPI.4610, Rice Bran, Ricolinostat, Ridaforolimus, Rigosertib, Rigosertib Sodium, Rilimogene Galvacirepvec, Rilimogene Galvacirepvec/Rilimogene Glafolivec, Rilimogene Glafolivec, Rilotumumab, Rindopepimut, Ripertamab, RIPK1 Inhibitor GSK3145095, Ripretinib, Risperidone Formulation in Rumenic Acid, Ritrosulfan, Rituximab, Rituximab and Hyaluronidase Human, Rituximab Conjugate CON-4619, Riviciclib, Rivoceranib, Rivoceranib Mesylate, RNR Inhibitor COH29, Robatumumab, Roblitinib, ROBO1-targeted BiCAR-NKT Cells, Rocakinogene Sifuplasmid, Rocapuldencel-T, Rociletinib, Rodorubicin, Roducitabine, Rofecoxib, Roflumilast, Rogaratinib, Rogletimide, Rolinsatamab Talirine, Romidepsin, Roneparstat, Roniciclib, Ropeginterferon Alfa-2B, Ropidoxuridine, Ropocamptide, Roquinimex, RORgamma Agonist LYC-55716, Rosabulin, Rose Bengal Solution PV-10, Rosiglitazone Maleate, Rosmantuzumab, Rosopatamab, Rosuvastatin, Rovalpituzumab Tesirine, RSK1-4 Inhibitor PMD-026, Rubitecan, Rucaparib, Rucaparib Camsylate, Rucaparib Phosphate, Ruthenium Ru-106, Ruthenium-based Small Molecule Therapeutic BOLD-100, Ruthenium-based Transferrin Targeting Agent NKP-1339, Ruxolitinib, Ruxolitinib Phosphate, Ruxotemitide, S-Adenosylmethionine, S-equol, S1P Receptor Agonist KRP203, Sabarubicin, Sabatolimab, Sacituzumab Govitecan, Sacubitril/Valsartan, Safingol, Sagopilone, Salirasib, Salmonella VNP20009, Sam68 Modulator CWP232291, Samalizumab, Samarium Sm 153-DOTMP, Samotolisib, Samrotamab Vedotin, Samuraciclib, Sapacitabine, Sapanisertib, Sapitinib, Saracatinib, Saracatinib Difumarate, SarCNU, Sardomozide, Sargramostim, Sasanlimab, Satraplatin, Savolitinib, SBIL-2, Scopoletin, SDF-1 Receptor Antagonist PTX-9908, Seclidemstat, Sedoxantrone Trihydrochloride, Selatinib Ditosilate, Selective Androgen Receptor Modulator RAD140, Selective Cytokine Inhibitory Drug CC-1088, Selective Estrogen Receptor Degrader AZD9496, Selective Estrogen Receptor Degrader AZD9833, Selective Estrogen Receptor Degrader LSZ102, Selective Estrogen Receptor Degrader LX-039, Selective Estrogen Receptor Degrader LY3484356, Selective Estrogen Receptor Degrader SRN-927, Selective Estrogen Receptor Modulator CC-8490, Selective Estrogen Receptor Modulator TAS-108, Selective Glucocorticoid Receptor Antagonist CORT125281, Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352, Seliciclib, Selicrelumab, Selinexor, Selitrectinib, Selonsertib, Selpercatinib, Selumetinib, Selumetinib Sulfate, Semaxanib, Semuloparin, Semustine, Seneca Valley Virus-001, Seocalcitol, Sepantronium Bromide, Serabelisib, Serclutamab Talirine, SERD D-0502, SERD G1T48, SERD GDC-9545, SERD SAR439859, SERD SHR9549, SERD ZN-c5, Serdemetan, Sergiolide, Seribantumab, Serine/Threonine Kinase Inhibitor CBP501, Serine/Threonine Kinase Inhibitor XL418, Serplulimab, Sevacizumab, Seviteronel, Shared Anti-Idiotype-AB-S006, Shared Anti-Idiotype-AB-S024A, Shark Cartilage, Shark Cartilage Extract AE-941, Shenqi Fuzheng Injection SQ001, Sho-Saiko-To, Short Chain Fatty Acid HQK-1004, SHP-1 Agonist SC-43, SHP2 Inhibitor JAB-3068, SHP2 Inhibitor RLY-1971, SHP2 Inhibitor RMC-4630, SHP2 Inhibitor TNO155, Shu Yu Wan Formula, Sialyl Tn Antigen, Sialyl Tn-KLH Vaccine, Sibrotuzumab, siG12D LODER, Silatecan AR-67, Silibinin, Silicon Phthalocyanine 4, Silmitasertib Sodium, Siltuximab, Simalikalactone D, Simeprevir, Simlukafusp Alfa, Simmitinib, Simotaxel, Simtuzumab, Simurosertib, Sintilimab, Siplizumab, Sipuleucel-T, Siremadlin, siRNA-transfected Peripheral Blood Mononuclear Cells APN401, Sirolimus, SIRPa-4-1BBL Fusion Protein DSP107, SIRPa-Fc Fusion Protein TTI-621, SIRPa-Fc-CD40L Fusion Protein SL-172154, SIRPa-IgG4-Fc Fusion Protein TTI-622, Sitimagene Ceradenovec, Sitravatinib, Sivifene, Sizofiran, SLC6A8 Inhibitor RGX-202, SLCT Inhibitor GNS561, SMAC Mimetic BI 891065, Smac Mimetic GDC-0152, Smac Mimetic GDC-0917, Smac Mimetic LCL161, SMO Protein Inhibitor ZSP1602, Smoothened Antagonist BMS-833923, Smoothened Antagonist LDE225 Topical, Smoothened Antagonist LEQ506, Smoothened Antagonist TAK-441, SN-38-Loaded Polymeric Micelles NK012, SNS01-T Nanoparticles, Sobuzoxane, Sodium Borocaptate, Sodium Butyrate, Sodium Dichloroacetate, Sodium Iodide I-131, Sodium Metaarsenite, Sodium Phenylbutyrate, Sodium Salicylate, Sodium Selenite, Sodium Stibogluconate, Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108, Sofituzumab Vedotin, Solitomab, Sonepcizumab, Sonidegib, Sonolisib, Sorafenib, Sorafenib Tosylate, Sorghum bicolor Supplement, Sotigalimab, Sotorasib, Sotrastaurin, Sotrastaurin Acetate, Soy Isoflavones, Soy Protein Isolate, Spanlecortemlocel, Sparfosate Sodium, Sparfosic Acid, Spartalizumab, Spebrutinib, Spherical Nucleic Acid Nanoparticle NU-0129, Spirogermanium, Spiromustine, Spiroplatin, Splicing Inhibitor H3B-8800, Spongistatin, Squalamine Lactate, SR-BP1/HSI Inhibitor SR31747A, SR-T100 Gel, Src Kinase Inhibitor AP 23846, Src Kinase Inhibitor KX2-391, Src Kinase Inhibitor KX2-391 Ointment, Src Kinase Inhibitor M475271, Src/Abl Kinase Inhibitor AZD0424, Src/tubulin Inhibitor KX02, SRPK1/ABCG2 Inhibitor SCO-101, ssRNA-based Immunomodulator CV8102, SSTR2-targeting Protein/DM1 Conjugate PEN-221, St. John's Wort, Stallimycin, Staphylococcal Enterotoxin A, Staphylococcal Enterotoxin B, STAT Inhibitor OPB-111077, STAT3 Inhibitor DSP-0337, STAT3 Inhibitor OPB-31121, STAT3 Inhibitor OPB-51602, STAT3 Inhibitor TTI-101, STAT3 Inhibitor WP1066, Staurosporine, STING Agonist BMS-986301, STING Agonist GSK3745417, STING Agonist IMSA101, STING Agonist MK-1454, STING Agonist SB 11285, STING Agonist TAK-676, STING-activating Cyclic Dinucleotide Agonist MIW815, STING-expressing E. coli SYNB1891, Streptonigrin, Streptozocin, Strontium Chloride Sr-89, Submicron Particle Paclitaxel Sterile Suspension, Sugemalimab, Sulfatinib, Sulforaphane, Sulindac, Sulofenur, Sumoylation Inhibitor TAK-981, Sunitinib, Sunitinib Malate, Super Enhancer Inhibitor GZ17-6.02, Superagonist Interleukin-15:Interleukin-15 Receptor alphaSu/Fc Fusion Complex ALT-803, Superoxide Dismutase Mimetic GC4711, Suramin, Suramin Sodium, Survivin Antigen, Survivin Antigen Vaccine DPX-Survivac, Survivin mRNA Antagonist EZN-3042, Survivin-expressing CVD908ssb-TXSVN Vaccine, Sustained-release Lipid Inhaled Cisplatin, Sustained-release Mitomycin C Hydrogel Formulation UGN-101, Sustained-release Mitomycin C Hydrogel Formulation UGN-102, Syk Inhibitor HMPL-523, Synchrotope TA2M Plasmid DNA Vaccine, Synchrovax SEM Plasmid DNA Vaccine, Synthetic Alkaloid PM00104, Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2, Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1, Synthetic hTERT DNA Vaccine INO-1400, Synthetic hTERT DNA Vaccine INO-1401, Synthetic Hypericin, Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201, Synthetic Long E6/E7 Peptides Vaccine HPV-01, Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b, Synthetic Plumbagin PCUR-101, T900607, Tabalumab, Tabelecleucel, Tacedinaline, Tafasitamab, Tagraxofusp-erzs, Talabostat, Talabostat Mesylate, Talacotuzumab, Talactoferrin Alfa, Taladegib, Talampanel, Talaporfin Sodium, Talazoparib, Taletrectinib, Talimogene Laherparepvec, Tallimustine, Talmapimod, Talotrexin, Talotrexin Ammonium, Taltobulin, TAM/c-Met Inhibitor RXDX-106, Tamibarotene, Taminadenant, Tamoxifen, Tamoxifen Citrate, Tamrintamab Pamozirine, Tandutinib, Tanespimycin, Tanibirumab, Tankyrase Inhibitor STP1002, Tanomastat, Tapotoclax, Tarenflurbil, Tarextumab, Tariquidar, Tasadenoturev, Taselisib, Tasidotin, Tasisulam, Tasisulam Sodium, Tasquinimod, Taurolidine, Tauromustine, Taurultam, Taurultam Analogue GP-2250, Tavokinogene Telseplasmid, Tavolimab, Taxane Analogue TPI 287, Taxane Compound, Taxol Analogue SID 530, Tazarotene, Tazemetostat, Tebentafusp, Teclistamab, Tecogalan Sodium, Tefinostat, Tegafur, Tegafur-gimeracil-oteracil Potassium, Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation, Tegafur-Uracil, Tegavivint, Teglarinad, Teglarinad Chloride, Telaglenastat, Telaglenastat Hydrochloride, Telapristone, Telapristone Acetate, Telatinib Mesylate, Telisotuzumab, Telisotuzumab Vedotin, Telomerase Inhibitor FJ5002, Telomerase-specific Type 5 Adenovirus OBP-301, Teloxantrone, Teloxantrone Hydrochloride, Telratolimod, Temarotene, Temoporfin, Temozolomide, Temsirolimus, Tenalisib, Tenifatecan, Teniposide, Tepoditamab, Tepotinib, Teprotumumab, Terameprocol, Terfluranol, Tergenpumatucel-L, Teroxirone, Tertomotide, Tesetaxel, Tesevatinib, Tesidolumab, Testolactone, Testosterone Enanthate, Tetanus Toxoid Vaccine, Tetradecanoylphorbol Acetate, Tetrahydrouridine, Tetraphenyl Chlorin Disulfonate, Tetrathiomolybdate, Tezacitabine, Tezacitabine Anhydrous, TGF-beta Receptor 1 Inhibitor PF-06952229, TGF-beta Receptor 1 Kinase Inhibitor SH3051, TGF-beta Receptor 1 Kinase Inhibitor YL-13027, TGFa-PE38 Immunotoxin, TGFbeta Inhibitor LY3200882, TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200, Thalicarpine, Thalidomide, Theliatinib, Theramide, Therapeutic Angiotensin-(1-7), Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907, Therapeutic Cancer Vaccine ATP128, Therapeutic Estradiol, Therapeutic Hydrocortisone, Therapeutic Liver Cancer Peptide Vaccine IMA970A, Thiarabine, Thiodiglycol, Thioguanine, Thioguanine Anhydrous, Thioinosine, Thioredoxin-1 Inhibitor PX-12, Thiotepa, Thioureidobutyronitrile, THL-P, Thorium Th 227 Anetumab, Thorium Th 227 Anetumab Corixetan, Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439, Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497, Threonine Tyrosine Kinase Inhibitor CFI-402257, Thymidylate Synthase Inhibitor CX1106, Thymidylate Synthase Inhibitor DFP-11207, Thymopentin, Thyroid Extract, Tiazofurin, Tidutamab, Tigapotide, Tigatuzumab, TIGIT Inhibitor M6223, TIGIT-targeting Agent MK-7684, Tilarginine, Tilogotamab, Tilsotolimod Sodium, Timonacic, Tin Ethyl Etiopurpurin, Tinostamustine, Tinzaparin Sodium, Tiomolibdate Choline, Tiomolibdate Diammonium, Tipapkinogene Sovacivec, Tipifarnib, Tipiracil, Tipiracil Hydrochloride, Tirabrutinib, Tiragolumab, Tirapazamine, Tirbanibulin, Tisagenlecleucel, Tislelizumab, Tisotumab Vedotin, Tivantinib, Tivozanib, TLC ELL-12, TLR Agonist BDB001, TLR Agonist BSG-001, TLR Agonist CADI-05, TLR-Directed Cationic Lipid-DNA Complex JVRS-100, TLR7 Agonist 852A, TLR7 agonist BNT411, TLR7 Agonist LHC165, TLR7/8/9 Antagonist IMO-8400, TLR8 Agonist DN1508052, TLR9 Agonist AST-008, TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells, Tocilizumab, Tocladesine, Tocotrienol, Tocotrienol-rich Fraction, Tolebrutinib, Toll-like Receptor 7 Agonist DSP-0509, Tolnidamine, Tomaralimab, Tomato-Soy Juice, Tomivosertib, Topical Betulinic Acid, Topical Celecoxib, Topical Fluorouracil, Topical Gemcitabine Hydrochloride, Topical Potassium Dobesilate, Topical Trichloroacetic Acid, Topixantrone, Topoisomerase I Inhibitor Genz-644282, Topoisomerase I Inhibitor LMP400, Topoisomerase I Inhibitor LMP776, Topoisomerase I/II Inhibitor NEV-801, Topoisomerase-1 Inhibitor LMP744, Topoisomerase-II Inhibitor Racemic XK469, Topoisomerase-II-beta Inhibitor Racemic XK469, Topotecan, Topotecan Hydrochloride, Topotecan Hydrochloride Liposomes, Topotecan Sustained-release Episcleral Plaque, Topsalysin, TORC1/2 Kinase Inhibitor DS-3078a, Toremifene, Toremifene Citrate, Toripalimab, Tosedostat, Tositumomab, Total Androgen Blockade, Tovetumab, Tozasertib Lactate, TP40 Immunotoxin, Trabectedin, Trabedersen, TRAIL Receptor Agonist ABBV-621, Trametinib, Trametinib Dimethyl Sulfoxide, Trans Sodium Crocetinate, Transdermal 17beta-Estradiol Gel BHR-200, Transdermal 4-Hydroxytestosterone, Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01, Transferrin Receptor-Targeted Liposomal p53 cDNA, Transferrin-CRM107, Tranylcypromine Sulfate, Trapoxin, Trastuzumab, Trastuzumab Conjugate BI-CON-02, Trastuzumab Deruxtecan, Trastuzumab Duocarmazine, Trastuzumab Emtansine, Trastuzumab Monomethyl Auristatin F, Trastuzumab-TLR 7/8 Agonist BDC-1001, Trastuzumab/Hyaluronidase-oysk, Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502, Trebananib, Tremelimumab, Treosulfan, Tretazicar, Tretinoin, Tretinoin Liposome, Triamcinolone Acetonide, Triamcinolone Hexacetonide, Triapine, Triazene Derivative CB10-277, Triazene Derivative TriN2755, Triazinate, Triaziquone, Tributyrin, Triciribine Phosphate, Trientine Hydrochloride, Triethylenemelamine, Trifluridine, Trifluridine and Tipiracil Hydrochloride, Trigriluzole, Trilaciclib, Trimelamol, Trimeric GITRL-Fc OMP-336B11, Trimethylcolchicinic Acid, Trimetrexate, Trimetrexate Glucuronate, Trioxifene, Triplatin Tetranitrate, Triptolide Analog, Triptorelin, Triptorelin Pamoate, Tris-acryl Gelatin Microspheres, Tritylcysteine, TRK Inhibitor AZD6918, TRK Inhibitor TQB3558, TrkA Inhibitor VMD-928, Trodusquemine, Trofosfamide, Troglitazone, Tropomyosin Receptor Kinase Inhibitor AZD7451, Troriluzole, Troxacitabine, Troxacitabine Nucleotide Prodrug MIV-818, TRPM8 Agonist D-3263, TRPV6 Calcium Channel Inhibitor SOR-C13, TSP-1 Mimetic ABT-510, TSP-1 Mimetic Fusion Protein CVX-045, Tubercidin, Tubulin Binding Agent TTI-237, Tubulin Inhibitor ALB 109564 Dihydrochloride, Tubulin Inhibitor ALB-109564, Tubulin Polymerization Inhibitor AEZS 112, Tubulin Polymerization Inhibitor CKD-516, Tubulin Polymerization Inhibitor VERU-111, Tubulin-Binding Agent SSR97225, Tucatinib, Tucidinostat, Tucotuzumab Celmoleukin, Tyroserleutide, Tyrosinase Peptide, Tyrosinase-KLH, Tyrosinase:146-156 Peptide, Tyrosine Kinase Inhibitor, Tyrosine Kinase Inhibitor OSI-930, Tyrosine Kinase Inhibitor SU5402, Tyrosine Kinase Inhibitor TL-895, Tyrosine Kinase Inhibitor XL228, UAE Inhibitor TAK-243, Ubenimex, Ubidecarenone Nanodispersion BPM31510n, Ublituximab, Ulinastatin, Ulixertinib, Ulocuplumab, Umbralisib, Uncaria tomentosa Extract, Upamostat, Upifitamab, Uproleselan, Uprosertib, Urabrelimab, Uracil Ointment, Urelumab, Uroacitides, Urokinase-Derived Peptide A6, Ursolic Acid, USP14/UCHL5 Inhibitor VLX1570, Utomilumab, Uzansertib, V930 Vaccine, Vaccine-Sensitized Draining Lymph Node Cells, Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules, Vactosertib, Vadacabtagene Leraleucel, Vadastuximab Talirine, Vadimezan, Valecobulin, Valemetostat, Valproic Acid, Valrubicin, Valspodar, Vandetanib, Vandetanib-eluting Radiopaque Bead BTG-002814, Vandortuzumab Vedotin, Vantictumab, Vanucizumab, Vapreotide, Varlilumab, Varlitinib, Varlitinib Tosylate, Vascular Disrupting Agent BNC105, Vascular Disrupting Agent BNC105P, Vascular Disrupting Agent ZD6126, Vatalanib, Vatalanib Succinate, Vecabrutinib, Vector-peptide Conjugated Paclitaxel, Vedolizumab, VEGF Inhibitor PTC299, VEGF/HGF-targeting DARPin MP0250, VEGFR Inhibitor KRN951, VEGFR-2 DNA Vaccine VXM01, VEGFR/FGFR Inhibitor ODM-203, VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593, VEGFR2 Tyrosine Kinase Inhibitor PF-00337210, VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813, Veliparib, Veltuzumab, Vemurafenib, Venetoclax, Verapamil, Verpasep Caltespen, Verubulin, Verubulin Hydrochloride, Vesencumab, Vesigenurtucel-L, VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220, VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820, Viagenpumatucel-L, Vibecotamab, Vibostolimab, Vilaprisan, Vinblastine, Vinblastine Sulfate, Vincristine, Vincristine Liposomal, Vincristine Sulfate, Vincristine Sulfate Liposome, Vindesine, Vinepidine, Vinflunine, Vinflunine Ditartrate, Vinfosiltine, Vinorelbine, Vinorelbine Tartrate, Vinorelbine Tartrate Emulsion, Vinorelbine Tartrate Oral, Vintafolide, Vinzolidine, Vinzolidine Sulfate, Virulizin, Vismodegib, Vistusertib, Vitamin D3 Analogue ILX23-7553, Vitamin E Compound, Vitespen, VLP-encapsulated TLR9 Agonist CMP-001, Vocimagene Amiretrorepvec, Vofatamab, Volasertib, Volociximab, Vonlerolizumab, Vopratelimab, Vorasidenib, Vorinostat, Vorolanib, Vorsetzumab Mafodotin, Vosaroxin, Vosilasarm, Voxtalisib, Vulinacimab, Warfarin Sodium, Wee1 Inhibitor ZN-c3, Wee1 Kinase Inhibitor Debio 0123, White Carrot, Wnt Signaling Inhibitor SM04755, Wnt Signaling Pathway Inhibitor SM08502, Wnt-5a Mimic Hexapeptide Foxy-5, Wobe-Mugos E, WT1 Peptide Vaccine OCV-501, WT1 Peptide Vaccine WT2725, WT1 Protein-derived Peptide Vaccine DSP-7888, WT1-A10/AS01B Immunotherapeutic GSK2130579A, WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401, Xanthohumol, XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410, Xeloda, Xentuzumab, Xevinapant, Xiaoai Jiedu Decoction, XIAP Antisense Oligonucleotide AEG35156, XIAP/cIAP1 Antagonist ASTX660, Xiliertinib, Xisomab 3G3, XPO1 Inhibitor SL-801, Y 90 Monoclonal Antibody CC49, Y 90 Monoclonal Antibody HMFG1, Y 90 Monoclonal Antibody Lym-1, Y 90 Monoclonal Antibody m170, Y 90 Monoclonal Antibody M195, Yang Yin Fu Zheng, Yangzheng Xiaoji Extract, Yiqi-yangyin-jiedu Herbal Decoction, Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8, Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101, Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66, Yttrium Y 90 Basiliximab, Yttrium Y 90 Colloid, Yttrium Y 90 Daclizumab, Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A, Yttrium Y 90 Glass Microspheres, Yttrium Y 90 Monoclonal Antibody B3, Yttrium Y 90 Monoclonal Antibody BrE-3, Yttrium Y 90 Monoclonal Antibody Hu3S193, Yttrium Y 90 Monoclonal Antibody MN-14, Yttrium Y 90 Resin Microspheres, Yttrium Y 90 Tabituximab Barzuxetan, Yttrium Y 90-DOTA-Biotin, Yttrium Y 90-DOTA-di-HSG Peptide IMP-288, Yttrium Y 90-Edotreotide, Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101, Yttrium Y-90 Clivatuzumab Tetraxetan, Yttrium Y-90 Epratuzumab Tetraxetan, Yttrium Y-90 Ibritumomab Tiuxetan, Yttrium Y-90 Tacatuzumab Tetraxetan, Yttrium-90 Polycarbonate Brachytherapy Plaque, Z-Endoxifen Hydrochloride, Zalcitabine, Zalifrelimab, Zalutumumab, Zandelisib, Zanidatamab, Zanolimumab, Zanubrutinib, Zebularine, Zelavespib, Zibotentan, Zinc Finger Nuclease ZFN-603, Zinc Finger Nuclease ZFN-758, Zinostatin, 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9184/3, 9185/3, 9186/3, 9187/3, 9191/0, 9192/3, 9193/3, 9194/3, 9195/3, 9200/0, 9200/1, 9210/0, 9210/1, 9220/0, 9220/1, 9220/3, 9221/0, 9221/3, 9230/0, 9230/3, 9231/3, 9240/3, 9241/0, 9242/3, 9243/3, 9250/1, 9250/3, 9251/1, 9251/3, 9252/0, 9252/3, 9260/3, 9261/3, 9262/0, 9270/0, 9270/1, 9270/3, 9271/0, 9272/0, 9273/0, 9274/0, 9275/0, 9280/0, 9281/0, 9282/0, 9290/0, 9290/3, 9300/0, 9301/0, 9302/0, 9302/3, 9310/0, 9310/3, 9311/0, 9312/0, 9320/0, 9321/0, 9322/0, 9330/0, 9330/3, 9340/0, 9341/1, 9341/3, 9342/3, 9350/1, 9351/1, 9352/1, 9360/1, 9361/1, 9362/3, 9363/0, 9364/3, 9365/3, 9370/3, 9371/3, 9372/3, 9373/0, 9380/3, 9381/3, 9382/3, 9383/1, 9384/1, 9385/3, 9390/0, 9390/1, 9390/3, 9391/3, 9392/3, 9393/3, 9394/1, 9395/3, 9396/3, 9400/3, 9401/3, 9410/3, 9411/3, 9412/1, 9413/0, 9420/3, 9421/1, 9423/3, 9424/3, 9425/3, 9430/3, 9431/1, 9432/1, 9440/3, 9440/6, 9441/3, 9442/1, 9442/3, 9444/1, 9445/3, 9450/3, 9451/3, 9460/3, 9470/3, 9471/3, 9472/3, 9473/3, 9474/3, 9475/3, 9476/3, 9477/3, 9478/3, 9480/3, 9490/0, 9490/3, 9491/0, 9492/0, 9493/0, 9500/3, 9501/0, 9501/3, 9502/0, 9502/3, 9503/3, 9504/3, 9505/1, 9505/3, 9506/1, 9507/0, 9508/3, 9509/1, 9510/0, 9510/3, 9511/3, 9512/3, 9513/3, 9514/1, 9520/3, 9521/3, 9522/3, 9523/3, 9530/0, 9530/1, 9530/3, 9531/0, 9532/0, 9533/0, 9534/0, 9535/0, 9537/0, 9538/1, 9538/3, 9539/1, 9539/3, 9540/0, 9540/1, 9540/3, 9541/0, 9542/3, 9550/0, 9560/0, 9560/1, 9560/3, 9561/3, 9562/0, 9570/0, 9571/0, 9571/3, 9580/0, 9580/3, 9581/3, 9582/0, 9590/3, 9591/3, 9596/3, 9597/3, 9650/3, 9651/3, 9652/3, 9653/3, 9654/3, 9655/3, 9659/3, 9661/3, 9662/3, 9663/3, 9664/3, 9665/3, 9667/3, 9670/3, 9671/3, 9673/3, 9675/3, 9678/3, 9679/3, 9680/3, 9684/3, 9687/3, 9688/3, 9689/3, 9690/3, 9691/3, 9695/3, 9698/3, 9699/3, 9700/3, 9701/3, 9702/3, 9705/3, 9708/3, 9709/3, 9712/3, 9714/3, 9716/3, 9717/3, 9718/3, 9719/3, 9724/3, 9725/3, 9726/3, 9727/3, 9728/3, 9729/3, 9731/3, 9732/3, 9733/3, 9734/3, 9735/3, 9737/3, 9738/3, 9740/1, 9740/3, 9741/1, 9741/3, 9742/3, 9750/3, 9751/1, 9751/3, 9752/1, 9753/1, 9754/3, 9755/3, 9756/3, 9757/3, 9758/3, 9759/3, 9760/3, 9761/3, 9762/3, 9764/3, 9765/1, 9766/1, 9767/1, 9768/1, 9769/1, 9800/3, 9801/3, 9805/3, 9806/3, 9807/3, 9808/3, 9809/3, 9811/3, 9812/3, 9813/3, 9814/3, 9815/3, 9816/3, 9817/3, 9818/3, 9820/3, 9823/3, 9826/3, 9827/3, 9831/3, 9832/3, 9833/3, 9834/3, 9835/3, 9836/3, 9837/3, 9840/3, 9860/3, 9861/3, 9863/3, 9865/3, 9866/3, 9867/3, 9869/3, 9870/3, 9871/3, 9872/3, 9873/3, 9874/3, 9875/3, 9876/3, 9891/3, 9895/3, 9896/3, 9897/3, 9898/1, 9898/3, 9910/3, 9911/3, 9920/3, 9930/3, 9931/3, 9940/3, 9945/3, 9946/3, 9948/3, 9950/3, 9960/3, 9961/3, 9962/3, 9963/3, 9964/3, 9965/3, 9966/3, 9967/3, 9970/1, 9971/1, 9971/3, 9975/3, 9980/3, 9982/3, 9983/3, 9984/3, 9985/3, 9986/3, 9987/3, 9989/3, 9991/3, 9992/3, Unknown, Not Reported",,FALSE,,,,CDS/participant, +Biospecimen Fixative,The name of the compound that preserves tissues and cells in this sample for microscopic study.,"Acetone, Alcohol, Formalin, Glutaraldehyde, OCT media, RNAlater, Saline, 95% Ethanol, NP40 Lysis Buffer, Not recorded, Diimidoester, Carbodiimide, Dimethylacetamide, Para-benzoquinone, PAXgene Tissue, TCL Lysis Buffer, Not applicable, Methacarn, CryoStor, Carnoy's Solution, Poloxamer, Other, None, Unknown",,TRUE,,,,CDS/NDpathology, +Biospecimen Embedding Medium,The name of the material that infiltrates and supports the specimen and preserves its shape and structure for sectioning and microscopy.,"Paraffin wax, Carbowax, Methacrylate, Epoxy Resin (Araldite), Agar embedding, Celloidin media, Gelatin, Other, None, Unknown",,TRUE,,,,CDS/NDpathology, +Biospecimen Acquisition Method,Records the method of acquisition or source for the specimen under consideration,"Autopsy, Biopsy, Blood draw, Core needle biopsy, Excisional Biopsy, Fine needle aspirate, Forceps Biopsy, Incisional Biopsy, Lymphadenectomy (regional nodes), Not applicable, Not reported, Not specified, Other, Pancreaticoduodenectomy, Punch biopsy, Re-excision, Sentinel node biopsy, Shave biopsy, Surgical Resection, Unknown",,FALSE,,,,CDS/NDpathology, +Biospecimen Description,A description of the biospecimen.,,,FALSE,,,,CDS/NDpathology, +Biospecimen Pathology,The pathology identifier associated with the biospecimen.,"Metastatic Neoplasm, Not Applicable, Not Otherwise Specified, Not Reported, Premalignant Neoplasm, Primary Neoplasm, Recurrent Neoplasm, Unknown, Xenograft",,FALSE,,,,CDS/NDpathology, +Biospecimen BioSample Identifier,BioSample (SAMN) accession number corresponding to the source of this biospecimen.,,,FALSE,,,,CDS/NDpathology, +Parent Biospecimen Key,Biospecimen Key identifer of a biospecimen from which this sample was derived. Do not use this field to reference the source model or individual.,,,FALSE,,,,CDS/NDpathology, +Biospecimen Stain,"Any of the various methods that use a dye, reagent, or other material for producing coloration in tissues or microorganisms for microscopic examination.",,,TRUE,,,,CDS/NDpathology, +Biospecimen Timepoint Offset,"The number of days that elapsed before the biospecimen was collected, relative to the event described by Biospecimen Timepoint Type. Floating point values are allowed.",,,FALSE,,,,CDS/file,num +Biospecimen Last Known Disease Status,Text term that describes the last known status of an individual associated with this specimen.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS/participant, +Biospecimen Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the malignant disease of the individual or model.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,MC2/STE, +Biospecimen Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, +Biospecimen Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, +Biospecimen Treatment Response,Text term that describes the treatment response of a model or patient from which this specimen was derived.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, +Biospecimen Incidence Type,Text term describing a change in disease status associated with the collection of this specimen. ,"Primary, Progression, Recurrence, Metastasis, Remission, No Disease",,FALSE,,,,CDS v5.0.4/Diagnosis, +Collection,The set of metadata entries associated with a Study. A collection defines which resources should be grouped for sharing and reuse.,,"Component, Collection_id, GrantView Key, Study Key, PublicationView Key, DatasetView Key, ToolView Key, EducationalResource Key, Biospecimen Table Id, Model Table Id, Individual Table Id, Imaging Channel Table Id, GeoMx ROI Table Id",FALSE,,,,, +Collection_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Biospecimen Table Id,The Synapse Id corresponding to a Biospecimen metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" +Model Table Id,The Synapse Id corresponding to a Model metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" +Individual Table Id,The Synapse Id corresponding to a Individual metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" +Imaging Channel Table Id,The Synapse Id corresponding to a Imaging Channel metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" +GeoMx ROI Table Id,The Synapse Id corresponding to a GeoMx ROI/Segment Annotations metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" +Consortium,Consortium information,,"Component, Consortium_id, Consortium Name, Consortium Display Name, Consortium Full Name, Consortium Description, Consortium Funding Agency, Website",FALSE,,,,, +Consortium Name,"Machine readable name of the research consortium. (e.g. sage_bionetworks, csbc_pson, etc.)",,,TRUE,,,,, +Consortium Display Name,"Human readable display name of research consortium (e.g. Sage Bionetworks, CSBC, PS-ON, etc.)",,,TRUE,,,,, +Consortium Full Name,Full name of research consortium. (e.g. Cancer Systems Biology Consortium).,,,TRUE,,,,, +Consortium Description,Description of research consortium,,,TRUE,,,,, +Consortium Funding Agency,Funding agency of research consortium ,NIH,,TRUE,,,,, +Website,Website of research consortium,,,TRUE,,,,,url +Consortium_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Dataset Name,Name of the dataset,,,TRUE,,,,, +Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique +Dataset Description,Description of the dataset.,,,FALSE,,,,, +Dataset Design,The overall design of the dataset.,,,FALSE,,,,, +Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url +Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like +Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like +Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like +Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, ToolView Key, Resource Title, Resource Link, Resource Doi, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",FALSE,,,Grant View,, +Resource Title,Title of the item.,,,TRUE,,,,OER,str +Resource Link,The URL that links to the item.,,,TRUE,,,,OER,url +Resource Doi,The Digital Object Identifier (DOI) associated with the educational resource.,,,TRUE,,,,MC2,url +Resource Topic,"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.","Computational Model Development, Computational Resource, Diversity/Equity/Inclusion, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Other, Outreach, Platform Development, Training Material, Tumor Progression, Tumor-Immune, Computer Science, Environmental Science, Information Science, Educational Technology, Anatomy/Physiology, Biology, Ecology, Genetics, Nutrition, Measurement and Data, Statistics and Probability, Chemistry, Physics, Systems Biology, Patient Advocacy",,TRUE,,,,OER,list like +Resource Activity Type,The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,"Activity/Lab, Assessment, Case Study, Data Set, Diagram/Illustration, Full Course, Game, Homework/Assignment, Interactive, Lecture, Lecture Notes, Lesson, Lesson Plan, Module, Primary Source, Reading, Simulation, Student Guide, Syllabus, Teaching/Learning Strategy, Textbook, Unit of Study",,TRUE,,,,OER,list like +Resource Primary Format,"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.","Audio, Braille/BNF, Downloadable docs, eBook, Graphics/Photos, Interactive, Mobile, Text/HTML, Video, Other",,TRUE,,,,OER,list like +Resource Intended Use,The purpose of the material for education. Multiple values should be provided as a comma separated list.,"Curriculum/Instruction, Assessment, Professional Development, Other",,TRUE,,,,OER,list like +Resource Primary Audience,The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,"Student, Teacher, Administrator, Parent, Professor, General Audience, Other",,TRUE,,,,OER,list like +Resource Educational Level,"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.","Preschool, Lower Primary, Upper Primary, Middle School, High School, Community College / Lower Division, College / Upper Division, Graduate / Profession, Career / Technical, Adult Education",,TRUE,,,,OER,list like +Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str +Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like +Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like::regex search [a-z]{2} +Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,MC2/grant,list like +Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like +Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like +Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str +Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",,,FALSE,,,,OER,unique +Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,list like +Resource Media Accessibility,"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.","Alternative Text, Audio Description, Braille, Captions, ChemML, Described Math, Display Transformability, Haptic, High Contrast, Large Print, Latex, Long Description, MathML, Nemeth Braille, Sign Language, Structural Navigation, Tactile Graphics, Text Transcript",,FALSE,,,,OER,list like +Resource Access Hazard,"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.","Flashing, Motion, Simulation, Sound",,FALSE,,,,OER,list like +Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/dataset,list like +Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",,,FALSE,,,,MC2/tool,list like +EducationalResource_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +File Description,Description of the file.,,,FALSE,,,,,str +File Design,The overall design of the dataset or file.,,,FALSE,,,,,str +File Url,The url of where the file is stored.,,,TRUE,,,,,url +File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, +File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, +File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like +File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like +File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, +FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str +File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str +File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int +File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str +File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num +File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num +File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, +File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique +File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like +NanoString GeoMx Auxiliary Files,Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.,,"Component, NanoStringGeoMxAuxiliaryFiles_id, Synapse ID of GeoMx DSP ROI Segment Annotation File, Synapse ID of GeoMx DSP PKC File, Synapse ID of GeoMx Lab Worksheet File, Synapse ID of GeoMx DSP Config File",FALSE,,,,MC2/STE, +NanoStringGeoMxAuxiliaryFiles_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2/STE,unique +Synapse ID of GeoMx Lab Worksheet File,Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.,,,FALSE,,,,HTAN,list like::regex match syn\d+ +Synapse ID of GeoMx DSP PKC File,The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.,,,FALSE,,,,HTAN,list like::regex match syn\d+ +Synapse ID of GeoMx DSP ROI Segment Annotation File,Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.,,,FALSE,,,,HTAN,list like::regex match syn\d+ +Synapse ID of GeoMx DSP Config File,Synapse ID of config.ini file generated by the GeoMx DSP workflow.,,,FALSE,,,,MC2/STE,list like::regex match syn\d+ +NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoStringGeoMxDSPImaging_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique +GeoMx Imaging Channel Names,Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,HTAN,list like +GeoMx Imaging AOI Coordinates,Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,MC2/STE,list like +NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, +NanoStringGeoMxDSPLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique +GeoMx DSP Assay Type,The assay type which was used for the GeoMx DSP pipeline.,"RNA nCounter, Protein nCounter, Protein NGS, RNA NGS",,FALSE,,,,HTAN, +NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoStringGeoMxDSPLevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique +NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoStringGeoMxDSPLevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique +NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw reads, NGS Stitched reads, NGS Aligned reads, NGS Deduplicated reads, NGS Trimmed reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", +NanoStringGeoMXROISegmentAnnotation_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique +GeoMx Scan name,GeoMx Scan name (as appears in Segment Summary),,,TRUE,,,,HTAN,str +GeoMx ROI Name,Name of Region of Interest corresponding to file. Multiple names should be comma-separated,,,TRUE,,,,HTAN,list like +GeoMx AOI Name,Name of Area of Illumination corresponding to file. Multiple names should be comma-separated,,,TRUE,,,,HTAN,list like +GeoMx ROI X Coordinate,Region of Interest X location within the image,,,FALSE,,,,HTAN,num +GeoMx ROI Y Coordinate,Region of Interest Y location within the image,,,FALSE,,,,HTAN,num +GeoMx AOI X Coordinate,Area of Illumination X location within the image,,,FALSE,,,,MC2/STE,num +GeoMx AOI Y Coordinate,Area of Illumination Y location within the image,,,FALSE,,,,MC2/STE,num +GeoMx QC status,ROI quality control flag as reported by the application,,,FALSE,,,,HTAN,list like +GeoMx Scan Height,Height of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num +GeoMx Scan Width,Width of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num +GeoMx Scan Offset X,Offset X of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num +GeoMx Scan Offset Y,Offset Y of the scan for GeoMx Analysis,,,FALSE,,,,HTAN,num +GeoMx Binding Density,The binding density as reported by the application,,,FALSE,,,,HTAN,num +GeoMx Positive norm factor,The Positive Control Normalization factor calculated using pos-hyb controls,,,FALSE,,,,HTAN,num +GeoMx Surface area,Surface area of the ROI in square microns (Β΅m2),,,FALSE,,,,HTAN,num +GeoMx Nuclei count,Number of nuclei detected in the segment (if applicable),,,FALSE,,,,HTAN,num +GeoMx Slide name,"Similar to a Run ID, the slide name indicates the slide a given ROI is linked to (as reported in Segment Summary).",,,FALSE,,,,HTAN,str +GeoMx In Situ Negative median,Is the median of all negative control probes for a given segment. A measure of signal to background for each segment.,,,FALSE,,,,HTAN,num +GeoMx Biological probe median,Is the median count from all probes except the negative control probes. A measure of signal to background for each segment,,,FALSE,,,,HTAN,num +GeoMx Negative count mean,The geometric mean of the unique negative probes in a GeoMx panel that do not target mRNA and establish the background count level per segment,,,FALSE,,,,STE,num +GeoMx No Template Control count,The number of reads detected by the GeoMx probe panel in the control associated with this ROI.,,,FALSE,,,,STE,num +GeoMx Excluded Outlier Probes,The list of probes excluded from analysis.,,,FALSE,,,,STE,num +GeoMx Limit of Quantification,The calculated limit of quantification associated with the segment.,,,FALSE,,,,STE,num +GeoMx Sequencing Saturation,"The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. More specifically, this is the fraction of confidently mapped, valid spot-barcode, valid UMI reads that had a non-unique (spot-barcode, UMI, gene).",,,FALSE,,,,HTAN,num +Grant Name,Name of the grant,,,TRUE,,,,, +Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ +Grant Abstract,Abstract for the grant,,,TRUE,,,,, +Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, +Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, +Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Albert Einstein College of Medicine, Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beckman Research Institute of City of Hope, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Clemson University, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Purdue University, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of Arkansas at Fayetteville, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"AECM, ASU, AU, BCM, BIDMC, BMC, BRI, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Clemson, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Purdue, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UARK, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like +Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like +Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, +GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",,,FALSE,,,,,url +Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",,,FALSE,,,,,url +Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date +NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url +Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int +Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date +Imaging Channel,Channel-level Metadata Attributes,,"Component, ImagingChannel_id, Study Key, Channel Identifier, Channel Name, Channel Passed QC, Channel Cycle Number, Channel Sub-cycle Number, Channel Antibody Role, Channel Target Name, Channel Antibody Name, Channel Resource ID, Channel Fluorophore, Channel Antibody Clone, Channel Antibody Lot, Channel Antibody Vendor, Channel Antibody Catalog Number, Channel Excitation Wavelength, Channel Emission Wavelength, Channel Excitation Bandwidth, Channel Emission Bandwidth, Channel Metal Symbol, Channel Metal Isotope, Channel Oligo Barcode Upper Strand, Channel Oligo Barcode Lower Strand, Channel Probe Dilution Ratio, Channel Probe Concentration",FALSE,,,,HTAN, +ImagingChannel_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, +Channel Identifier,This must match the corresponding field in the OME-XML / TIFF header. (eg 'Channel:0:1'),,,TRUE,,,,HTAN, +Channel Name,This must match the corresponding field in the OME-XML / TIFF header. (eg 'Blue' or 'CD45' or 'E-cadherin'),,,TRUE,,,,HTAN, +Channel Passed QC,Identify stains that did not pass QC but are included in the dataset.,"Yes, No - Channel Failed QC",,FALSE,,,,HTAN, +Channel Cycle Number,The cycle # in which the co-listed reagent(s) was(were) used. Integer >= 1 (up to number of cycles),,,FALSE,,,,HTAN, +Channel Sub-cycle Number,Sub cycle number,,,FALSE,,,,HTAN, +Channel Antibody Role,Is this antibody acting as a primary or secondary antibody?,"Primary, Secondary",,FALSE,,,,HTAN, +Channel Target Name,Short descriptive name (abbreviation) for this target (antigen),,,TRUE,,,,HTAN, +Channel Antibody Name,"Antibody Name (free text (eg β€œKeratin”, β€œCD163”, β€œDNA”))",,,FALSE,,,,HTAN, +Channel Resource ID,Research Resource Identifier (eg β€œRRID: AB_394606”),,,FALSE,,,,HTAN, +Channel Fluorophore,Fluorescent dye label (eg Alexa Fluor 488),,,FALSE,,,,HTAN, +Channel Antibody Clone,Clone,,,FALSE,,,,HTAN, +Channel Antibody Lot,Lot number from vendor,,,FALSE,,,,HTAN, +Channel Antibody Vendor,Vendor,,,FALSE,,,,HTAN, +Channel Antibody Catalog Number,Catalog Number,,,FALSE,,,,HTAN, +Channel Excitation Wavelength,Center/peak of the excitation spectrum (nm),,,FALSE,,,,HTAN, +Channel Emission Wavelength,Center/peak of the emission spectrum (nm),,,FALSE,,,,HTAN, +Channel Excitation Bandwidth,Nominal width of excitation spectrum (nm),,,FALSE,,,,HTAN, +Channel Emission Bandwidth,Nominal width of emission spectrum (nm),,,FALSE,,,,HTAN, +Channel Metal Symbol,Element abbreviation. eg β€œLa” or β€œNd”,"H, He, Li, Be, B, C, N, O, F, Ne, Na, Mg, Al, Si, P, S, Cl, Ar, K, Ca, Sc, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Ga, Ge, As, Se, Br, Kr, Rb, Sr, Y, Zr, Nb, Mo, Tc, Ru, Rh, Pd, Ag, Cd, In, Sn, Sb, Te, I, Xe, Cs, Ba, La, Ce, Pr, Nd, Pm, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, Lu, Hf, Ta, W, Re, Os, Ir, Pt, Au, Hg, Tl, Pb, Bi, Po, At, Rn, Fr, Ra, Ac, Th, Pa, U, Np, Pu, Am, Bk, Cf, Es, Fm, Md, No, Lr, Rf, Db, Sg, Bh, Hs, Mt, Ds, Rg, Cn, Nh, Fl, Mc, Lv, Ts, Og",,FALSE,,,,HTAN, +Channel Metal Isotope,Element mass number,,,FALSE,,,,HTAN, +Channel Oligo Barcode Upper Strand,Oligo Barcode - Upper Strand,,,FALSE,,,,HTAN, +Channel Oligo Barcode Lower Strand,Oligo Barcode - Lower Strand,,,FALSE,,,,HTAN, +Channel Probe Dilution Ratio,Dilution (eg 1:1000),,,FALSE,,,,HTAN, +Channel Probe Concentration,Concentration (eg 10ug/mL),,,FALSE,,,,HTAN, +Imaging Level 1,Raw imaging data,,"Component, ImagingLevel1_id, Filename, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, ImagingChannel Key",FALSE,,,File View,HTAN, +ImagingLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,Mc2, +Image Assay Type,Type of imaging assay,"CODEX, CyCIF, ExSeq, GeoMX-DSP, H&E, IHC, IMC, MERFISH, MIBI, mIHC, MxIF, Not Applicable, SABER, t-CyCIF",,TRUE,,,,HTAN, +Image Protocol Link,"Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.",,,FALSE,,,,HTAN, +Image Platform Model,The specific model of the instrument used to carry out an imaging experiment.,,,FALSE,,,,HTAN, +Image Platform Manufacturer,Producer of the imaging equipment that was used to generate the digital image,,,FALSE,,,,CDS/imaging, +Image Software,"The name of the software package that was used to capture, generate, and process the image.",,,FALSE,,,,CDS/imaging, +Imaging Level 2,Raw and pre-processed image data,,"Component, ImagingLevel2_id, Filename, ImagingLevel1 Key, ImagingChannel Key, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, Image Objective, Image Nominal Magnification, Image Lense Aperture, Image Working Distance, Image Working Distance Unit, Image Immersion Type, Image Pyramidal, Image Z stack, Image Timeseries, Image FOV Index, Image FOV Size X, Image FOV Size X Unit, Image FOV Size Y, Image FOV Size Y Unit, Image Frame Averaging, Image Identifier, Image Dimension Order, Image Physical Size X, Image Physical Size X Unit, Image Physical Size Y, Image Physical Size Y Unit, Image Physical Size Z, Image Physical Size Z Unit, Image Pixels BigEndian, Image Plane Count, Image Channel Size, Image Number of Timepoints, Image X Pixels, Image Y Pixels, Image Z Pixels, Image Pixel Type",FALSE,,,File View,HTAN, +ImagingLevel2_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, +Image Protocol Link,"Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.",,,FALSE,,,,HTAN, +Image Platform Model,The specific model of the instrument used to carry out an imaging experiment.,,,FALSE,,,,HTAN, +Image Platform Manufacturer,Producer of the imaging equipment that was used to generate the digital image,,,FALSE,,,,HTAN, +Image Software,"The name of the software package that was used to capture, generate, and process the image.",,,FALSE,,,,HTAN, +Image Objective,Objective lens identifier,,,FALSE,,,,HTAN, +Image Nominal Magnification,The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units),,,FALSE,,,,HTAN, +Image Lense Aperture,The numerical aperture of the lens. Floating point value > 0.,,,FALSE,,,,HTAN, +Image Working Distance,"The working distance of the lens, expressed as a floating point number. Floating point > 0.",,,FALSE,,,,HTAN, +Image Working Distance Unit,The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),"cm, mm, Β΅m, nm, Γ…",,FALSE,,,,HTAN, +Image Immersion Type,Immersion medium,"Air, Oil, Water, Other, Multi, Glycerol",,FALSE,,,,HTAN, +Image Pyramidal,Does data file contain pyramid of images,"True, False",,FALSE,,,,HTAN, +Image Z stack,Does data file contain a Z-stack of images,,,FALSE,,,,HTAN, +Image Timeseries,Does data file contain a time-series of images,,,FALSE,,,,HTAN, +Image FOV Index,Index of FOV (as it pertains to its sequence order). Integer >= 1,,,FALSE,,,,HTAN, +Image FOV Size X,Field of view X dimension. Floating point,,,FALSE,,,,HTAN, +Image FOV Size X Unit,Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, +Image FOV Size Y,Field of view Y dimension. Floating point value,,,FALSE,,,,HTAN, +Image FOV Size Y Unit,Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, +Image Frame Averaging,"Number of frames averaged together (if no averaging, set to 1). Integer >= 1",,,FALSE,,,,HTAN, +Image Identifier,"Unique internal image identifier. eg ""Image:0"". (To be extracted from OME-XML)",,,FALSE,,,,HTAN, +Image Dimension Order,The order in which the individual planes of data are interleaved.,,,FALSE,,,,HTAN, +Image Physical Size X,Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.,,,FALSE,,,,HTAN, +Image Physical Size X Unit,The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, +Image Physical Size Y,Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.,,,FALSE,,,,HTAN, +Image Physical Size Y Unit,The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, +Image Physical Size Z,Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.,,,FALSE,,,,HTAN, +Image Physical Size Z Unit,The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um),,,FALSE,,,,HTAN, +Image Pixels BigEndian,Boolean (True/False),"True, False",,FALSE,,,,HTAN, +Image Plane Count,"Number of Z-planes (not to be confused with downsampled ""pyramid""). Integer >=1",,,FALSE,,,,HTAN, +Image Channel Size,Number of channels. Integer >= 1,,,FALSE,,,,HTAN, +Image Number of Timepoints,Number of time points. Integer >= 1,,,FALSE,,,,HTAN, +Image X Pixels,Size of image: X dimension (in pixels). Integer >= 1,,,FALSE,,,,HTAN, +Image Y Pixels,Size of image: Y dimension (in pixels). Integer >= 1,,,FALSE,,,,HTAN, +Image Z Pixels,Size of image: Z dimension (in pixels). Integer >= 1,,,FALSE,,,,HTAN, +Image Pixel Type,"Data type for each pixel value. E.g. ""uint16""",,,FALSE,,,,HTAN, +Imaging Level 3 Image,Quality controlled or co-registered image data,,"Component, ImagingLevel3Image_id, Filename, ImagingChannel Key, ImagingLevel2 Key, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, Image Objective, Image Nominal Magnification, Image Lense Aperture, Image Working Distance, Image Immersion Type, Image Pyramidal, Image Z stack, Image Timeseries, Image FOV Index, Image FOV Size X, Image FOV Size Y, Image FOV Size Y Unit, Image Frame Averaging",FALSE,,,File View,HTAN, +ImagingLevel3Image_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, +Imaging Level 3 Segments,Image segmentation mask information,,"Component, ImagingLevel3Segments_id, Filename, ImagingLevel2 Key, ImagingLevel3Image Key, Image Segmentation Data Type, Image Parameter file, Software and Version, Image Object Class, Image Object Class Description, Image Number of Objects",FALSE,,,File View,HTAN, +ImagingLevel3Segments_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, +Image Segmentation Data Type,Specifies how the segmentation is stored,"Mask, Outline, Polygon, Probability Map, Point",,TRUE,,,,HTAN,str +Image Parameter file,Path in Synapse to a text file listing algorithm version numbers and relevant parameters needed to reproduce the analysis,,,FALSE,,,,HTAN, +Image Object Class,Defines the structure that the mask delineates,"Nucleus, Cytoplasm, Plasma Membrane, Whole Cell, Spot, Other",,FALSE,,,,HTAN,str +Image Number of Objects,The number of objects (eg cells) described,,,FALSE,,,,HTAN,num +Image Object Class Description,"If Imaging Object Class is ""Other"", please use this field to provide a text description of the imaging object class associated with the segmentation data",,,FALSE,,,,HTAN,str +Imaging Level 4,Derived imaging data or object by feature array,,"Component, ImagingLevel4_id, Filename, ImagingLevel2 Key, ImagingLevel3Image Key, ImagingLevel3Segments Key, Image Parameter file, Image Software, Image Number of Objects, Image Number of Features, Image Object Class, Image Summary Statistic",FALSE,,,File View,HTAN, +ImagingLevel4_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, +Image Number of Features,The number of features (eg channels) described,,,TRUE,,,,HTAN,num +Image Summary Statistic,Function used to summarize object/feature intensity,"Mean, Median, Not Specified",,TRUE,,,,HTAN, +Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status",FALSE,,,Study,, +Individual_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Individual Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0,list like +Individual Last Known Disease Status,Text term that describes the last known status of an individual.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS Imaging v1.0, +Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0,str +Individual Disease Type,"The type of tumor associated with the specimen. Multiple values permitted, comma separated.","Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,CDS Imaging v1.0, +Individual Primary Diagnosis,"Text term used to describe the patient's histologic diagnosis, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,TRUE,,,,CDS Metadata v1.3.3/Diagnosis, +Individual Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS Imaging v1.0/Diagnosis, +Individual Tumor Subtype,"The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.",,,FALSE,,,,MC2/STE,str +Individual Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, +Individual Site of Origin,"The text term used to describe the anatomic site of origin, of the patient's malignant disease.","Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,CDS Imaging v1.0, +Individual Age at Diagnosis,"Age at the time the individual was diagnosed, expressed in years.",,,FALSE,,,,CDS Imaging v1.0,num +Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,TRUE,,,,CDS Imaging v1.0/participant,str +Individual dbGaP Subject Id,The identifer assigned to the participant by dbGap,,,FALSE,,,,CDS Imaging v1.0,str +Individual Days to Last Followup,Number of days between the dates used for index and last follow-up,,,FALSE,,,,CDS Imaging v1.0,int +Individual Primary Tumor Stage,Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"Not Reported, T0, T1, T1a, T1a1, T1a2, T1b, T1b1, T1b2, T1c, T1mi, T2, T2a, T2a1, T2a2, T2b, T2c, T2d, T3, T3a, T3b, T3c, T3d, T4, T4a, T4b, T4c, T4d, T4e, T5, Ta, Tis, Tis (DCIS), Tis (LCIS), Tis (Paget's), TX, Unknown",,FALSE,,,,CDS Imaging v1.0, +Individual Tumor Lymph Node Stage,Extent of the regional lymph node involvement for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"N0, N0 (i+), N0 (i-), N0 (mol+), N0 (mol-), N1, N1a, N1b, N1bI, N1bII, N1bIII, N1bIV, N1c, N1mi, N2, N2a, N2b, N2c, N3, N3a, N3b, N3c, N4, NX, Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, +Individual Days To Recurrence,Number of days between the date used for index and the date the patient's disease recurred,,,FALSE,,,,CDS Imaging v1.0,int +Individual Days to Last Known Disease Status,"Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days.",,,FALSE,,,,CDS Imaging v1.0,int +Individual Treatment Type,Text term that describes the kind of treatment administered.,"3-Dimensional Conformal Radiation Therapy, Allogeneic Hematopoietic Stem Cell Transplantation, Autologous Stem Cell Transplantation, Brachytherapy, Cellular Therapy, Chemotherapy, Concurrent Chemoradiation, Conventional Radiotherapy, Electron Beam Radiation Therapy, External Beam Radiation Therapy, High-Dose Rate Brachytherapy, Hormone Therapy, Immunotherapy, Intensity-Modulated Radiation Therapy, Low-Dose Rate Brachytherapy, Not Reported, Organ Transplantation, Palliative Care, Pharmacotherapy, Photon Beam Radiation Therapy, Proton Beam Radiation Therapy, Radiation Therapy, Radiofrequency Ablation, Radiopharmaceutical, Stem Cell Transplant, Stereotactic Body Radiation Therapy, Stereotactic Radiosurgery, Surgical Procedure, Targeted Molecular Therapy, Unknown",,FALSE,,,,CDS Imaging v1.0, +Individual Days to Treatment,Number of days between the date used for index and the date the treatment started.,,,FALSE,,,,CDS Imaging v1.0,int +Individual Therapeutic Agent,Text identification of the individual agent(s) used as part of a treatment regimen.,"10-Deacetyltaxol, 11C Topotecan, 11D10 AluGel Anti-Idiotype Monoclonal Antibody, 12-Allyldeoxoartemisinin, 13-Deoxydoxorubicin, 14C BMS-275183, 17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521, 2-Deoxy-D-glucose, 2-Ethylhydrazide, 2-Fluoroadenine, 2-Fluorofucose-containing SGN-2FF, 2-Hydroxyestradiol, 2-Hydroxyestrone, 2-Hydroxyflutamide Depot, 2-Hydroxyoleic Acid, 2-Methoxyestradiol, 2-Methoxyestradiol Nanocrystal Colloidal Dispersion, 2-Methoxyestrone, 2-O; 3-O Desulfated Heparin, 2;6-Diaminopurine, 2;6-Dimethoxyquinone, 2'-F-ara-deoxyuridine, 3'-C-ethynylcytidine, 3'-dA Phosphoramidate NUC-7738, 4-Nitroestrone 3-Methyl Ether, 4-Thio-2-deoxycytidine, 4'-Iodo-4'-Deoxydoxorubicin, 5-Aza-4'-thio-2'-deoxycytidine, 5-Fluoro-2-Deoxycytidine, 6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158, 7-Cyanoquinocarcinol, 7-Ethyl-10-Hydroxycamptothecin, 7-Hydroxystaurosporine, 8-Azaguanine, 9-Ethyl 6-Mercaptopurine, 9H-Purine-6Thio-98D, A2A Receptor Antagonist EOS100850, Abagovomab, Abarelix, Abemaciclib, Abemaciclib Mesylate, Abexinostat, Abexinostat Tosylate, Abiraterone, Abiraterone Acetate, Abituzumab, Acai Berry Juice, Acalabrutinib, Acalisib, Aceglatone, Acetylcysteine, Acitretin, Acivicin, Aclacinomycin B, Aclarubicin, Acodazole, Acodazole Hydrochloride, Acolbifene Hydrochloride, Acridine, Acridine Carboxamide, Acronine, Actinium Ac 225 Lintuzumab, Actinium Ac 225-FPI-1434, Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591, Actinomycin C2, Actinomycin C3, Actinomycin F1, Activin Type 2B Receptor Fc Fusion Protein STM 434, Acyclic Nucleoside Phosphonate Prodrug ABI-1968, Ad-RTS-hIL-12, Adagloxad Simolenin, Adavosertib, Adecatumumab, Adenosine A2A Receptor Antagonist AZD4635, Adenosine A2A Receptor Antagonist CS3005, Adenosine A2A Receptor Antagonist NIR178, Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999, Adenosine A2A/A2B Receptor Antagonist AB928, Adenosine A2B Receptor Antagonist PBF-1129, Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201, Adenoviral Brachyury Vaccine ETBX-051, Adenoviral Cancer Vaccine PF-06936308, Adenoviral MUC1 Vaccine ETBX-061, Adenoviral PSA Vaccine ETBX-071, Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001, Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP, Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901, Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE, Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918, Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931, Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3, Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001, Aderbasib, ADH-1, AE37 Peptide/GM-CSF Vaccine, AEE788, Aerosol Gemcitabine, Aerosolized Aldesleukin, Aerosolized Liposomal Rubitecan, Afatinib, Afatinib Dimaleate, Afimoxifene, Afuresertib, Agatolimod Sodium, Agerafenib, Aglatimagene Besadenovec, Agonistic Anti-CD40 Monoclonal Antibody ADC-1013, Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949, Agonistic Anti-OX40 Monoclonal Antibody MEDI6469, AKR1C3-activated Prodrug OBI-3424, AKT 1/2 Inhibitor BAY1125976, AKT Inhibitor ARQ 092, Akt Inhibitor LY2780301, Akt Inhibitor MK2206, Akt Inhibitor SR13668, Akt/ERK Inhibitor ONC201, Alacizumab Pegol, Alanosine, Albumin-binding Cisplatin Prodrug BTP-114, Aldesleukin, Aldoxorubicin, Alectinib, Alefacept, Alemtuzumab, Alestramustine, Alflutinib Mesylate, Algenpantucel-L, Alisertib, Alitretinoin, ALK Inhibitor, ALK Inhibitor ASP3026, ALK Inhibitor PLB 1003, ALK Inhibitor RO5424802, ALK Inhibitor TAE684, ALK Inhibitor WX-0593, ALK-2 Inhibitor TP-0184, ALK-FAK Inhibitor CEP-37440, ALK/c-Met Inhibitor TQ-B3139, ALK/FAK/Pyk2 Inhibitor CT-707, ALK/ROS1/Met Inhibitor TQ-B3101, ALK/TRK Inhibitor TSR-011, Alkotinib, Allodepleted T Cell Immunotherapeutic ATIR101, Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715, Allogeneic Anti-BCMA-CAR T-cells PBCAR269A, Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells, Allogeneic Anti-CD19 CAR T-cells ALLO-501A, Allogeneic Anti-CD19 Universal CAR-T Cells CTA101, Allogeneic Anti-CD19-CAR T-cells PBCAR0191, Allogeneic Anti-CD20 CAR T-cells LUCAR-20S, Allogeneic Anti-CD20-CAR T-cells PBCAR20A, Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22, Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100, Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001, Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001, Allogeneic Cellular Vaccine 1650-G, Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120, Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130, Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A, Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM, Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine, Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo, Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2, Allogeneic Irradiated Melanoma Cell Vaccine CSF470, Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307, Allogeneic Melanoma Vaccine AGI-101H, Allogeneic Natural Killer Cell Line MG4101, Allogeneic Natural Killer Cell Line NK-92, Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01, Allogeneic Renal Cell Carcinoma Vaccine MGN1601, Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19, Allosteric ErbB Inhibitor BDTX-189, Allovectin-7, Almurtide, Alobresib, Alofanib, Alpelisib, Alpha Galactosylceramide, Alpha V Beta 1 Inhibitor ATN-161, Alpha V Beta 8 Antagonist PF-06940434, alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801, Alpha-Gal AGI-134, Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H, Alpha-Thioguanine Deoxyriboside, Alpha-tocopheryloxyacetic Acid, Alsevalimab, Altiratinib, Altretamine, Alvespimycin, Alvespimycin Hydrochloride, Alvocidib, Alvocidib Hydrochloride, Alvocidib Prodrug TP-1287, Amatuximab, Ambamustine, Ambazone, Amblyomin-X, Amcasertib, Ametantrone, Amifostine, Amino Acid Injection, Aminocamptothecin, Aminocamptothecin Colloidal Dispersion, Aminoflavone Prodrug AFP464, Aminopterin, Aminopterin Sodium, Amivantamab, Amolimogene Bepiplasmid, Amonafide L-Malate, Amrubicin, Amrubicin Hydrochloride, Amsacrine, Amsacrine Lactate, Amsilarotene, Amustaline, Amustaline Dihydrochloride, Amuvatinib, Amuvatinib Hydrochloride, Anakinra, Anastrozole, Anaxirone, Ancitabine, Ancitabine Hydrochloride, Andecaliximab, Androgen Antagonist APC-100, Androgen Receptor Antagonist BAY 1161116, Androgen Receptor Antagonist SHR3680, Androgen Receptor Antagonist TAS3681, Androgen Receptor Antagonist TRC253, Androgen Receptor Antisense Oligonucleotide AZD5312, Androgen Receptor Antisense Oligonucleotide EZN-4176, Androgen Receptor Degrader ARV-110, Androgen Receptor Degrader CC-94676, Androgen Receptor Downregulator AZD3514, Androgen Receptor Inhibitor EPI-7386, Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118, Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10, Andrographolide, Androstane Steroid HE3235, Anetumab Ravtansine, Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241, Angiogenesis Inhibitor GT-111, Angiogenesis Inhibitor JI-101, Angiogenesis/Heparanase Inhibitor PG545, Angiopoietin-2-specific Fusion Protein PF-04856884, Anhydrous Enol-oxaloacetate, Anhydrovinblastine, Aniline Mustard, Anlotinib Hydrochloride, Annamycin, Annamycin Liposomal, Annonaceous Acetogenins, Ansamitomicin P-3, Anthramycin, Anthrapyrazole, Anti c-KIT Antibody-drug Conjugate LOP628, Anti-5T4 Antibody-drug Conjugate ASN004, Anti-5T4 Antibody-Drug Conjugate PF-06263507, Anti-5T4 Antibody-drug Conjugate SYD1875, Anti-A33 Monoclonal Antibody KRN330, Anti-A5B1 Integrin Monoclonal Antibody PF-04605412, Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087, Anti-AG7 Antibody Drug Conjugate AbGn-107, Anti-AGS-16 Monoclonal Antibody AGS-16M18, Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME, Anti-AGS-8 Monoclonal Antibody AGS-8M4, Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B, Anti-alpha5beta1 Integrin Antibody MINT1526A, Anti-ANG2 Monoclonal Antibody MEDI-3617, Anti-angiopoietin Monoclonal Antibody AMG 780, Anti-APRIL Monoclonal Antibody BION-1301, Anti-AXL Fusion Protein AVB-S6-500, Anti-AXL/PBD Antibody-drug Conjugate ADCT-601, Anti-B7-H3 Antibody DS-5573a, Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a, Anti-B7-H4 Monoclonal Antibody FPA150, Anti-B7H3 Antibody-drug Conjugate MGC018, Anti-BCMA Antibody SEA-BCMA, Anti-BCMA Antibody-drug Conjugate AMG 224, Anti-BCMA Antibody-drug Conjugate CC-99712, Anti-BCMA Antibody-drug Conjugate GSK2857916, Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA, Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459, Anti-BCMA/CD3 BiTE Antibody AMG 420, Anti-BCMA/CD3 BiTE Antibody AMG 701, Anti-BCMA/CD3 BiTE Antibody REGN5458, Anti-BCMA/PBD ADC MEDI2228, Anti-BTLA Monoclonal Antibody TAB004, Anti-BTN3A Agonistic Monoclonal Antibody ICT01, Anti-c-fms Monoclonal Antibody AMG 820, Anti-c-KIT Monoclonal Antibody CDX 0158, Anti-c-Met Antibody-drug Conjugate HTI-1066, Anti-c-Met Antibody-drug Conjugate TR1801, Anti-c-Met Monoclonal Antibody ABT-700, Anti-c-Met Monoclonal Antibody ARGX-111, Anti-c-Met Monoclonal Antibody HLX55, Anti-c-MET Monoclonal Antibody LY2875358, Anti-C-met Monoclonal Antibody SAIT301, Anti-C4.4a Antibody-Drug Conjugate BAY1129980, Anti-C5aR Monoclonal Antibody IPH5401, Anti-CA19-9 Monoclonal Antibody 5B1, Anti-CA6-DM4 Immunoconjugate SAR566658, Anti-CCR7 Antibody-drug Conjugate JBH492, Anti-CD117 Monoclonal Antibody JSP191, Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1, Anti-CD123 ADC IMGN632, Anti-CD123 Monoclonal Antibody CSL360, Anti-CD123 Monoclonal Antibody KHK2823, Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404, Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A, Anti-CD123/CD3 Bispecific Antibody APVO436, Anti-CD123/CD3 Bispecific Antibody JNJ-63709178, Anti-CD123/CD3 BiTE Antibody SAR440234, Anti-CD137 Agonistic Monoclonal Antibody ADG106, Anti-CD137 Agonistic Monoclonal Antibody AGEN2373, Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017, Anti-CD137 Agonistic Monoclonal Antibody CTX-471, Anti-CD137 Agonistic Monoclonal Antibody LVGN6051, Anti-CD157 Monoclonal Antibody MEN1112, Anti-CD166 Probody-drug Conjugate CX-2009, Anti-CD19 Antibody-drug Conjugate SGN-CD19B, Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003, Anti-CD19 iCAR NK Cells, Anti-CD19 Monoclonal Antibody DI-B4, Anti-CD19 Monoclonal Antibody MDX-1342, Anti-CD19 Monoclonal Antibody MEDI-551, Anti-CD19 Monoclonal Antibody XmAb5574, Anti-CD19-DM4 Immunoconjugate SAR3419, Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL, Anti-CD19/CD22 CAR NK Cells, Anti-CD19/CD3 BiTE Antibody AMG 562, Anti-CD19/CD3 Tetravalent Antibody AFM11, Anti-CD20 Monoclonal Antibody B001, Anti-CD20 Monoclonal Antibody BAT4306F, Anti-CD20 Monoclonal Antibody MIL62, Anti-CD20 Monoclonal Antibody PRO131921, Anti-CD20 Monoclonal Antibody SCT400, Anti-CD20 Monoclonal Antibody TL011, Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002, Anti-CD20-engineered Toxin Body MT-3724, Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323, Anti-CD20/CD3 Monoclonal Antibody REGN1979, Anti-CD20/CD3 Monoclonal Antibody XmAb13676, Anti-CD205 Antibody-drug Conjugate OBT076, Anti-CD22 ADC TRPH-222, Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S, Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A, Anti-CD25 Monoclonal Antibody RO7296682, Anti-CD25-PBD Antibody-drug Conjugate ADCT-301, Anti-CD26 Monoclonal Antibody YS110, Anti-CD27 Agonistic Monoclonal Antibody MK-5890, Anti-CD27L Antibody-Drug Conjugate AMG 172, Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1), Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135, Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05, Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564, Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119, Anti-CD3/CD20 Bispecific Antibody GEN3013, Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424, Anti-CD3/CD7-Ricin Toxin A Immunotoxin, Anti-CD30 Monoclonal Antibody MDX-1401, Anti-CD30 Monoclonal Antibody XmAb2513, Anti-CD30/CD16A Monoclonal Antibody AFM13, Anti-CD30/DM1 Antibody-drug Conjugate F0002, Anti-CD32B Monoclonal Antibody BI-1206, Anti-CD33 Antibody-drug Conjugate IMGN779, Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564, Anti-CD33 Monoclonal Antibody BI 836858, Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633, Anti-CD33/CD3 Bispecific Antibody GEM 333, Anti-CD33/CD3 Bispecific Antibody JNJ-67571244, Anti-CD33/CD3 BiTE Antibody AMG 330, Anti-CD33/CD3 BiTE Antibody AMG 673, Anti-CD352 Antibody-drug Conjugate SGN-CD352A, Anti-CD37 Antibody-Drug Conjugate IMGN529, Anti-CD37 Bispecific Monoclonal Antibody GEN3009, Anti-CD37 MMAE Antibody-drug Conjugate AGS67E, Anti-CD37 Monoclonal Antibody BI 836826, Anti-CD38 Antibody-drug Conjugate STI-6129, Anti-CD38 Monoclonal Antibody MOR03087, Anti-CD38 Monoclonal Antibody SAR442085, Anti-CD38 Monoclonal Antibody TAK-079, Anti-CD38-targeted IgG4-attenuated IFNa TAK-573, Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257, Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342, Anti-CD39 Monoclonal Antibody SRF617, Anti-CD39 Monoclonal Antibody TTX-030, Anti-CD40 Agonist Monoclonal Antibody ABBV-927, Anti-CD40 Agonist Monoclonal Antibody CDX-1140, Anti-CD40 Monoclonal Antibody Chi Lob 7/4, Anti-CD40 Monoclonal Antibody SEA-CD40, Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042, Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428, Anti-CD40L Fc-Fusion Protein BMS-986004, Anti-CD44 Monoclonal Antibody RO5429083, Anti-CD45 Monoclonal Antibody AHN-12, Anti-CD46 Antibody-drug Conjugate FOR46, Anti-CD47 ADC SGN-CD47M, Anti-CD47 Monoclonal Antibody AO-176, Anti-CD47 Monoclonal Antibody CC-90002, Anti-CD47 Monoclonal Antibody Hu5F9-G4, Anti-CD47 Monoclonal Antibody IBI188, Anti-CD47 Monoclonal Antibody IMC-002, Anti-CD47 Monoclonal Antibody SHR-1603, Anti-CD47 Monoclonal Antibody SRF231, Anti-CD47 Monoclonal Antibody TJC4, Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801, Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A, Anti-CD52 Monoclonal Antibody ALLO-647, Anti-CD70 Antibody-Drug Conjugate MDX-1203, Anti-CD70 Antibody-drug Conjugate SGN-CD70A, Anti-CD70 CAR-expressing T Lymphocytes, Anti-CD70 Monoclonal Antibody MDX-1411, Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029, Anti-CD73 Monoclonal Antibody BMS-986179, Anti-CD73 Monoclonal Antibody CPI-006, Anti-CD73 Monoclonal Antibody NZV930, Anti-CD73 Monoclonal Antibody TJ4309, Anti-CD74 Antibody-drug Conjugate STRO-001, Anti-CD98 Monoclonal Antibody IGN523, Anti-CDH6 Antibody-drug Conjugate HKT288, Anti-CEA BiTE Monoclonal Antibody AMG211, Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody, Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2, Anti-CEACAM1 Monoclonal Antibody CM-24, Anti-CEACAM5 Antibody-Drug Conjugate SAR408701, Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47, Anti-CEACAM6 Antibody BAY1834942, Anti-claudin18.2 Monoclonal Antibody AB011, Anti-Claudin18.2 Monoclonal Antibody TST001, Anti-CLDN6 Monoclonal Antibody ASP1650, Anti-CLEC12A/CD3 Bispecific Antibody MCLA117, Anti-CLEVER-1 Monoclonal Antibody FP-1305, Anti-CSF1 Monoclonal Antibody PD-0360324, Anti-CSF1R Monoclonal Antibody IMC-CS4, Anti-CSF1R Monoclonal Antibody SNDX-6352, Anti-CTGF Monoclonal Antibody FG-3019, Anti-CTLA-4 Monoclonal Antibody ADG116, Anti-CTLA-4 Monoclonal Antibody ADU-1604, Anti-CTLA-4 Monoclonal Antibody AGEN1181, Anti-CTLA-4 Monoclonal Antibody BCD-145, Anti-CTLA-4 Monoclonal Antibody HBM4003, Anti-CTLA-4 Monoclonal Antibody MK-1308, Anti-CTLA-4 Monoclonal Antibody ONC-392, Anti-CTLA-4 Monoclonal Antibody REGN4659, Anti-CTLA-4 Probody BMS-986288, Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217, Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841, Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015, Anti-CTLA4 Antibody Fc Fusion Protein KN044, Anti-CTLA4 Monoclonal Antibody BMS-986218, Anti-CXCR4 Monoclonal Antibody PF-06747143, Anti-Denatured Collagen Monoclonal Antibody TRC093, Anti-DKK-1 Monoclonal Antibody LY2812176, Anti-DKK1 Monoclonal Antibody BHQ880, Anti-DLL3/CD3 BiTE Antibody AMG 757, Anti-DLL4 Monoclonal Antibody MEDI0639, Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83, Anti-DR5 Agonist Monoclonal Antibody TRA-8, Anti-DR5 Agonistic Antibody DS-8273a, Anti-DR5 Agonistic Monoclonal Antibody INBRX-109, Anti-EGFR Monoclonal Antibody CPGJ 602, Anti-EGFR Monoclonal Antibody EMD 55900, Anti-EGFR Monoclonal Antibody GC1118, Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX, Anti-EGFR Monoclonal Antibody HLX-07, Anti-EGFR Monoclonal Antibody Mixture MM-151, Anti-EGFR Monoclonal Antibody RO5083945, Anti-EGFR Monoclonal Antibody SCT200, Anti-EGFR Monoclonal Antibody SYN004, Anti-EGFR TAP Antibody-drug Conjugate IMGN289, Anti-EGFR/c-Met Bispecific Antibody EMB-01, Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372, Anti-EGFR/CD16A Bispecific Antibody AFM24, Anti-EGFR/DM1 Antibody-drug Conjugate AVID100, Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013, Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321, Anti-EGFRvIII Antibody Drug Conjugate AMG 595, Anti-EGFRvIII Immunotoxin MR1-1, Anti-EGFRvIII/CD3 BiTE Antibody AMG 596, Anti-EGP-2 Immunotoxin MOC31-PE, Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F, Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F, Anti-Ep-CAM Monoclonal Antibody ING-1, Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310, Anti-EphA2 Monoclonal Antibody DS-8895a, Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547, Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111, Anti-ErbB3 Antibody ISU104, Anti-ErbB3 Monoclonal Antibody AV-203, Anti-ErbB3 Monoclonal Antibody CDX-3379, Anti-ErbB3 Monoclonal Antibody REGN1400, Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141, Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A, Anti-FAP/Interleukin-2 Fusion Protein RO6874281, Anti-FCRH5/CD3 BiTE Antibody BFCR4350A, Anti-FGFR2 Antibody BAY1179470, Anti-FGFR3 Antibody-drug Conjugate LY3076226, Anti-FGFR4 Monoclonal Antibody U3-1784, Anti-FLT3 Antibody-drug Conjugate AGS62P1, Anti-FLT3 Monoclonal Antibody 4G8-SDIEM, Anti-FLT3 Monoclonal Antibody IMC-EB10, Anti-FLT3/CD3 BiTE Antibody AMG 427, Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002, Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202, Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012, Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962, Anti-GARP Monoclonal Antibody ABBV-151, Anti-GCC Antibody-Drug Conjugate MLN0264, Anti-GCC Antibody-Drug Conjugate TAK-164, Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody, Anti-GD2 Monoclonal Antibody hu14.18K322A, Anti-GD2 Monoclonal Antibody MORAb-028, Anti-GD3 Antibody-drug Conjugate PF-06688992, Anti-GITR Agonistic Monoclonal Antibody ASP1951, Anti-GITR Agonistic Monoclonal Antibody BMS-986156, Anti-GITR Agonistic Monoclonal Antibody INCAGN01876, Anti-GITR Monoclonal Antibody GWN 323, Anti-GITR Monoclonal Antibody MK-4166, Anti-Globo H Monoclonal Antibody OBI-888, Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999, Anti-Glypican 3/CD3 Bispecific Antibody ERY974, Anti-GnRH Vaccine PEP223, Anti-gpA33/CD3 Monoclonal Antibody MGD007, Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a, Anti-gremlin-1 Monoclonal Antibody UCB6114, Anti-GRP78 Monoclonal Antibody PAT-SM6, Anti-HA Epitope Monoclonal Antibody MEDI8852, Anti-HB-EGF Monoclonal Antibody KHK2866, Anti-HBEGF Monoclonal Antibody U3-1565, Anti-hepcidin Monoclonal Antibody LY2787106, Anti-HER-2 Bispecific Antibody KN026, Anti-HER2 ADC DS-8201a, Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702, Anti-HER2 Antibody-drug Conjugate A166, Anti-HER2 Antibody-drug Conjugate ARX788, Anti-HER2 Antibody-drug Conjugate BAT8001, Anti-HER2 Antibody-drug Conjugate DP303c, Anti-HER2 Antibody-drug Conjugate MEDI4276, Anti-HER2 Antibody-drug Conjugate RC48, Anti-HER2 Bi-specific Monoclonal Antibody ZW25, Anti-HER2 Bispecific Antibody-drug Conjugate ZW49, Anti-HER2 Immune Stimulator-antibody Conjugate NJH395, Anti-HER2 Monoclonal Antibody B002, Anti-HER2 Monoclonal Antibody CT-P6, Anti-HER2 Monoclonal Antibody HLX22, Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343, Anti-HER2-DM1 ADC B003, Anti-HER2-DM1 Antibody-drug Conjugate GQ1001, Anti-HER2-vc0101 ADC PF-06804103, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302, Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128, Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522, Anti-HER2/MMAE Antibody-drug Conjugate MRG002, Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A, Anti-HER3 Antibody-drug Conjugate U3 1402, Anti-HER3 Monoclonal Antibody GSK2849330, Anti-HGF Monoclonal Antibody TAK-701, Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968, Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1, Anti-HLA-DR Monoclonal Antibody IMMU-114, Anti-HLA-G Antibody TTX-080, Anti-human GITR Monoclonal Antibody AMG 228, Anti-human GITR Monoclonal Antibody TRX518, Anti-ICAM-1 Monoclonal Antibody BI-505, Anti-ICOS Agonist Antibody GSK3359609, Anti-ICOS Agonist Monoclonal Antibody BMS-986226, Anti-ICOS Monoclonal Antibody KY1044, Anti-ICOS Monoclonal Antibody MEDI-570, Anti-IGF-1R Monoclonal Antibody AVE1642, Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022, Anti-IL-1 alpha Monoclonal Antibody MABp1, Anti-IL-13 Humanized Monoclonal Antibody TNX-650, Anti-IL-15 Monoclonal Antibody AMG 714, Anti-IL-8 Monoclonal Antibody BMS-986253, Anti-IL-8 Monoclonal Antibody HuMax-IL8, Anti-ILDR2 Monoclonal Antibody BAY 1905254, Anti-ILT4 Monoclonal Antibody MK-4830, Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A, Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388, Anti-IRF4 Antisense Oligonucleotide ION251, Anti-KIR Monoclonal Antibody IPH 2101, Anti-KSP/Anti-VEGF siRNAs ALN-VSP02, Anti-LAG-3 Monoclonal Antibody IBI-110, Anti-LAG-3 Monoclonal Antibody INCAGN02385, Anti-LAG-3 Monoclonal Antibody LAG525, Anti-LAG-3 Monoclonal Antibody REGN3767, Anti-LAG-3/PD-L1 Bispecific Antibody FS118, Anti-LAG3 Monoclonal Antibody BI 754111, Anti-LAG3 Monoclonal Antibody MK-4280, Anti-LAG3 Monoclonal Antibody TSR-033, Anti-LAMP1 Antibody-drug Conjugate SAR428926, Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181, Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102, Anti-LGR5 Monoclonal Antibody BNC101, Anti-LIF Monoclonal Antibody MSC-1, Anti-LILRB4 Monoclonal Antibody IO-202, Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A, Anti-Ly6E Antibody-Drug Conjugate RG 7841, Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C, Anti-Melanin Monoclonal Antibody PTI-6D2, Anti-mesothelin Antibody-drug Conjugate BMS-986148, Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100, Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A, Anti-mesothelin/MMAE Antibody-drug Conjugate RC88, Anti-Met Monoclonal Antibody Mixture Sym015, Anti-Met/EGFR Monoclonal Antibody LY3164530, Anti-MMP-9 Monoclonal Antibody GS-5745, Anti-MUC1 Monoclonal Antibody BTH1704, Anti-MUC16/CD3 Bispecific Antibody REGN4018, Anti-MUC16/CD3 BiTE Antibody REGN4018, Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A, Anti-MUC17/CD3 BiTE Antibody AMG 199, Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062, Anti-myostatin Monoclonal Antibody LY2495655, Anti-NaPi2b Antibody-drug Conjugate XMT-1592, Anti-NaPi2b Monoclonal Antibody XMT-1535, Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E, Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A, Anti-nf-P2X7 Antibody Ointment BIL-010t, Anti-NRP1 Antibody ASP1948, Anti-Nucleolin Aptamer AS1411, Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A, Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso, Anti-OFA Immunotherapeutic BB-MPI-03, Anti-OX40 Agonist Monoclonal Antibody ABBV-368, Anti-OX40 Agonist Monoclonal Antibody BGB-A445, Anti-OX40 Agonist Monoclonal Antibody PF-04518600, Anti-OX40 Antibody BMS 986178, Anti-OX40 Hexavalent Agonist Antibody INBRX-106, Anti-OX40 Monoclonal Antibody GSK3174998, Anti-OX40 Monoclonal Antibody IBI101, Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256, Anti-PD-1 Checkpoint Inhibitor PF-06801591, Anti-PD-1 Fusion Protein AMP-224, Anti-PD-1 Monoclonal Antibody 609A, Anti-PD-1 Monoclonal Antibody AK105, Anti-PD-1 Monoclonal Antibody AMG 404, Anti-PD-1 Monoclonal Antibody BAT1306, Anti-PD-1 Monoclonal Antibody BCD-100, Anti-PD-1 Monoclonal Antibody BI 754091, Anti-PD-1 Monoclonal Antibody CS1003, Anti-PD-1 Monoclonal Antibody F520, Anti-PD-1 Monoclonal Antibody GLS-010, Anti-PD-1 Monoclonal Antibody HLX10, Anti-PD-1 Monoclonal Antibody HX008, Anti-PD-1 Monoclonal Antibody JTX-4014, Anti-PD-1 Monoclonal Antibody LZM009, Anti-PD-1 Monoclonal Antibody MEDI0680, Anti-PD-1 Monoclonal Antibody MGA012, Anti-PD-1 Monoclonal Antibody SCT-I10A, Anti-PD-1 Monoclonal Antibody Sym021, Anti-PD-1 Monoclonal Antibody TSR-042, Anti-PD-1/Anti-CTLA4 DART Protein MGD019, Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315, Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669, Anti-PD-1/Anti-LAG-3 DART Protein MGD013, Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318, Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172, Anti-PD-1/CD47 Infusion Protein HX009, Anti-PD-1/CTLA-4 Bispecific Antibody AK104, Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752, Anti-PD-1/TIM-3 Bispecific Antibody RO7121661, Anti-PD-1/VEGF Bispecific Antibody AK112, Anti-PD-L1 Monoclonal Antibody A167, Anti-PD-L1 Monoclonal Antibody BCD-135, Anti-PD-L1 Monoclonal Antibody BGB-A333, Anti-PD-L1 Monoclonal Antibody CBT-502, Anti-PD-L1 Monoclonal Antibody CK-301, Anti-PD-L1 Monoclonal Antibody CS1001, Anti-PD-L1 Monoclonal Antibody FAZ053, Anti-PD-L1 Monoclonal Antibody GR1405, Anti-PD-L1 Monoclonal Antibody HLX20, Anti-PD-L1 Monoclonal Antibody IMC-001, Anti-PD-L1 Monoclonal Antibody LY3300054, Anti-PD-L1 Monoclonal Antibody MDX-1105, Anti-PD-L1 Monoclonal Antibody MSB2311, Anti-PD-L1 Monoclonal Antibody RC98, Anti-PD-L1 Monoclonal Antibody SHR-1316, Anti-PD-L1 Monoclonal Antibody TG-1501, Anti-PD-L1 Monoclonal Antibody ZKAB001, Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105, Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046, Anti-PD-L1/CD137 Bispecific Antibody MCLA-145, Anti-PD-L1/IL-15 Fusion Protein KD033, Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244, Anti-PD1 Monoclonal Antibody AGEN2034, Anti-PD1/CTLA4 Bispecific Antibody XmAb20717, Anti-PGF Monoclonal Antibody RO5323441, Anti-PKN3 siRNA Atu027, Anti-PLGF Monoclonal Antibody TB-403, Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4, Anti-PRAME Immunotherapeutic GSK2302032A, Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C, Anti-PRL-3 Monoclonal Antibody PRL3-zumab, Anti-prolactin Receptor Antibody LFA102, Anti-PSCA Monoclonal Antibody AGS-1C4D4, Anti-PSMA Monoclonal Antibody MDX1201-A488, Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704, Anti-PSMA Monoclonal Antibody-MMAE Conjugate, Anti-PSMA/CD28 Bispecific Antibody REGN5678, Anti-PSMA/CD3 Bispecific Antibody CCW702, Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081, Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414, Anti-PSMA/PBD ADC MEDI3726, Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020, Anti-PVRIG Monoclonal Antibody COM701, Anti-RANKL Monoclonal Antibody GB-223, Anti-RANKL Monoclonal Antibody JMT103, Anti-Ribonucleoprotein Antibody ATRC-101, Anti-ROR1 ADC VLS-101, Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002, Anti-S15 Monoclonal Antibody NC318, Anti-sCLU Monoclonal Antibody AB-16B5, Anti-SIRPa Monoclonal Antibody CC-95251, Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E, Anti-TAG-72 Monoclonal Antibody scFV CC-49/218, Anti-TF Monoclonal Antibody ALT-836, Anti-TGF-beta Monoclonal Antibody NIS793, Anti-TGF-beta Monoclonal Antibody SAR-439459, Anti-TGF-beta RII Monoclonal Antibody IMC-TR1, Anti-TIGIT Monoclonal Antibody AB154, Anti-TIGIT Monoclonal Antibody BGB-A1217, Anti-TIGIT Monoclonal Antibody BMS-986207, Anti-TIGIT Monoclonal Antibody COM902, Anti-TIGIT Monoclonal Antibody OMP-313M32, Anti-TIGIT Monoclonal Antibody SGN-TGT, Anti-TIM-3 Antibody BMS-986258, Anti-TIM-3 Monoclonal Antibody BGB-A425, Anti-TIM-3 Monoclonal Antibody INCAGN02390, Anti-TIM-3 Monoclonal Antibody MBG453, Anti-TIM-3 Monoclonal Antibody Sym023, Anti-TIM-3 Monoclonal Antibody TSR-022, Anti-TIM3 Monoclonal Antibody LY3321367, Anti-TIM3 Monoclonal Antibody SHR-1702, Anti-Tissue Factor Monoclonal Antibody MORAb-066, Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711, Anti-TROP2 Antibody-drug Conjugate BAT8003, Anti-TROP2 Antibody-drug Conjugate SKB264, Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a, Anti-TWEAK Monoclonal Antibody RG7212, Anti-VEGF Anticalin PRS-050-PEG40, Anti-VEGF Monoclonal Antibody hPV19, Anti-VEGF/ANG2 Nanobody BI 836880, Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T, Anti-VEGFC Monoclonal Antibody VGX-100, Anti-VEGFR2 Monoclonal Antibody HLX06, Anti-VEGFR2 Monoclonal Antibody MSB0254, Anti-VEGFR3 Monoclonal Antibody IMC-3C5, Anti-VISTA Monoclonal Antibody JNJ 61610588, Antiangiogenic Drug Combination TL-118, Antibody-drug Conjugate ABBV-011, Antibody-drug Conjugate ABBV-085, Antibody-drug Conjugate ABBV-155, Antibody-drug Conjugate ABBV-176, Antibody-drug Conjugate ABBV-838, Antibody-drug Conjugate ADC XMT-1536, Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014, Antibody-Drug Conjugate DFRF4539A, Antibody-drug Conjugate MEDI7247, Antibody-drug Conjugate PF-06647263, Antibody-drug Conjugate PF-06664178, Antibody-drug Conjugate SC-002, Antibody-drug Conjugate SC-003, Antibody-drug Conjugate SC-004, Antibody-drug Conjugate SC-005, Antibody-drug Conjugate SC-006, Antibody-drug Conjugate SC-007, Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008, Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV, Antimetabolite FF-10502, Antineoplastic Agent Combination SM-88, Antineoplastic Vaccine, Antineoplastic Vaccine GV-1301, Antineoplaston A10, Antineoplaston AS2-1, Antisense Oligonucleotide GTI-2040, Antisense Oligonucleotide QR-313, Antitumor B Key Active Component-alpha, Antrodia cinnamomea Supplement, Antroquinonol Capsule, Apalutamide, Apatorsen, Apaziquone, APC8015F, APE1/Ref-1 Redox Inhibitor APX3330, Aphidicoline Glycinate, Apilimod Dimesylate Capsule, Apitolisib, Apolizumab, Apomab, Apomine, Apoptosis Inducer BZL101, Apoptosis Inducer GCS-100, Apoptosis Inducer MPC-2130, Apricoxib, Aprinocarsen, Aprutumab, Aprutumab Ixadotin, AR Antagonist BMS-641988, Arabinoxylan Compound MGN3, Aranose, ARC Fusion Protein SL-279252, Archexin, Arcitumomab, Arfolitixorin, Arginase Inhibitor INCB001158, Arginine Butyrate, Arnebia Indigo Jade Pearl Topical Cream, Arsenic Trioxide, Arsenic Trioxide Capsule Formulation ORH 2014, Artemether Sublingual Spray, Artemisinin Dimer, Artesunate, Arugula Seed Powder, Aryl Hydrocarbon Receptor Antagonist BAY2416964, Aryl Hydrocarbon Receptor Inhibitor IK-175, Asaley, Asciminib, Ascrinvacumab, Ashwagandha Root Powder Extract, ASP4132, Aspacytarabine, Asparaginase, Asparaginase Erwinia chrysanthemi, Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10, Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10, Astuprotimut-R, Asulacrine, Asulacrine Isethionate, Asunercept, At 211 Monoclonal Antibody 81C6, Atamestane, Atezolizumab, Atiprimod, Atiprimod Dihydrochloride, Atiprimod Dimaleate, ATM Inhibitor M 3541, ATM Kinase Inhibitor AZD0156, ATM Kinase Inhibitor AZD1390, Atorvastatin Calcium, Atorvastatin Sodium, ATR Inhibitor RP-3500, ATR Kinase Inhibitor BAY1895344, ATR Kinase Inhibitor M1774, ATR Kinase Inhibitor M6620, ATR Kinase Inhibitor VX-803, Atrasentan Hydrochloride, Attenuated Listeria monocytogenes CRS-100, Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001, Attenuated Measles Virus Encoding SCD Transgene TMV-018, Atuveciclib, Audencel, Auranofin, Aurora A Kinase Inhibitor LY3295668, Aurora A Kinase Inhibitor LY3295668 Erbumine, Aurora A Kinase Inhibitor MK5108, Aurora A Kinase Inhibitor TAS-119, Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076, Aurora B Serine/Threonine Kinase Inhibitor TAK-901, Aurora B/C Kinase Inhibitor GSK1070916A, Aurora kinase A/B inhibitor TT-00420, Aurora Kinase Inhibitor AMG 900, Aurora Kinase Inhibitor BI 811283, Aurora Kinase Inhibitor MLN8054, Aurora Kinase Inhibitor PF-03814735, Aurora Kinase Inhibitor SNS-314, Aurora Kinase Inhibitor TTP607, Aurora Kinase/VEGFR2 Inhibitor CYC116, Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707, Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055, Autologous Anti-BCMA CAR T-cells PHE885, Autologous Anti-BCMA CAR-transduced T-cells KITE-585, Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11, Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053, Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143, Autologous Anti-CD123 CAR-T Cells, Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx, Autologous Anti-CD19 CAR T-cells IM19, Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19, Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19, Autologous Anti-CD19 CAR-CD28 T-cells ET019002, Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01, Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19, Autologous Anti-CD19 T-cell Receptor T cells ET190L1, Autologous Anti-CD19 TAC-T cells TAC01-CD19, Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells, Autologous Anti-CD19/CD22 CAR T-cells AUTO3, Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014, Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells, Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1, Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s, Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes, Autologous Anti-FLT3 CAR T Cells AMG 553, Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202, Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1, Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100, Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes, Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794, Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes, Autologous Anti-PSMA CAR-T Cells P-PSMA-101, Autologous AXL-targeted CAR T-cells CCT301-38, Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B, Autologous BCMA-targeted CAR T Cells CC-98633, Autologous BCMA-targeted CAR T Cells LCAR-B4822M, Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528, Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F, Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022, Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006, Autologous CD123-4SCAR-expressing T-cells 4SCAR123, Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1, Autologous CD19-targeted CAR T Cells CC-97540, Autologous CD19-targeted CAR T Cells JWCAR029, Autologous CD19-targeted CAR-T Cells GC007F, Autologous CD19/PD-1 Bispecific CAR-T Cells, Autologous CD20-4SCAR-expressing T-cells 4SCAR20, Autologous CD22-4SCAR-expressing T-cells 4SCAR22, Autologous CD38-4SCAR-expressing T-cells 4SCAR38, Autologous Clonal Neoantigen T Cells ATL001, Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19, Autologous Deep IL-15 Primed T-cells TRQ15-01, Autologous Dendritic Cell Vaccine ACT2001, Autologous Dendritic Cell-based Immunotherapeutic AV0113, Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa, Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells, Autologous Genetically-modified MAGE-A4 C1032 T Cells, Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858, Autologous HPV16 E7-specific HLA-A*02:01-restricted TCR Gene Engineered Lymphocytes KITE-439, Autologous LMP1/LMP2/EBNA1-specific HLA-A02:01/24:02/11:01-restricted TCR-expressing T-lymphocytes YT-E001, Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718, Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR, Autologous Mesenchymal Stem Cells Apceth_101, Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11, Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC, Autologous Multi-lineage Potential Cells, Autologous Nectin-4/FAP-targeted CAR-T Cells, Autologous NKG2D CAR T-cells CYAD-02, Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01, Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine, Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001, Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101, Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601, Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201, Autologous ROR2-targeted CAR T-cells CCT301-59, Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1, Autologous TCR-engineered T-cells IMA201, Autologous TCR-engineered T-cells IMA202, Autologous TCR-engineered T-cells IMA203, Autologous TCRm-expressing T-cells ET140203, Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG, Autologous Tumor Infiltrating Lymphocytes LN-144, Autologous Tumor Infiltrating Lymphocytes LN-145, Autologous Tumor Infiltrating Lymphocytes LN-145-S1, Autologous Tumor Infiltrating Lymphocytes MDA-TIL, Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T, Avadomide, Avadomide Hydrochloride, Avapritinib, Avdoralimab, Avelumab, Aviscumine, Avitinib Maleate, Axalimogene Filolisbac, Axatilimab, Axicabtagene Ciloleucel, Axitinib, AXL Inhibitor DS-1205c, AXL Inhibitor SLC-391, AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M, AXL/ FLT3/VEGFR2 Inhibitor KC1036, Axl/Mer Inhibitor INCB081776, Axl/Mer Inhibitor PF-07265807, Azacitidine, Azapicyl, Azaribine, Azaserine, Azathioprine, Azimexon, Azintuxizumab Vedotin, Aziridinylbenzoquinone RH1, Azotomycin, Azurin:50-77 Cell Penetrating Peptide p28, B-Raf/VEGFR-2 Inhibitor RAF265, Babaodan Capsule, Bacillus Calmette-Guerin Substrain Connaught Live Antigen, Bactobolin, Bafetinib, Balixafortide, Balstilimab, Baltaleucel-T, Banoxantrone, Barasertib, Bardoxolone, Bardoxolone Methyl, Baricitinib, Batabulin, Batabulin Sodium, Batimastat, Bavituximab, Bazedoxifene, Bazlitoran, BC-819 Plasmid/Polyethylenimine Complex, BCG Solution, BCG Tokyo-172 Strain Solution, BCG Vaccine, Bcl-2 Inhibitor APG 2575, Bcl-2 Inhibitor BCL201, Bcl-2 Inhibitor BGB-11417, Bcl-2 Inhibitor LP-108, Bcl-2 Inhibitor S65487, Bcl-Xs Adenovirus Vaccine, BCMA x CD3 T-cell Engaging Antibody CC-93269, BCMA-CD19 Compound CAR T Cells, BCMA/CD3e Tri-specific T-cell Activating Construct HPN217, Bcr-Abl Kinase Inhibitor K0706, Bcr-Abl Kinase Inhibitor PF-114, BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351, Beauvericin, Becatecarin, Belagenpumatucel-L, Belantamab Mafodotin, Belapectin, Belimumab, Belinostat, Belotecan Hydrochloride, Belvarafenib, Belzutifan, Bemarituzumab, Bemcentinib, Bempegaldesleukin, Benaxibine, Bendamustine, Bendamustine Hydrochloride, Bendamustine-containing Nanoparticle-based Formulation RXDX-107, Benzaldehyde Dimethane Sulfonate, Benzoylphenylurea, Berberine Chloride, Bermekimab, Bersanlimab, Berubicin Hydrochloride, Berzosertib, BET Bromodomain Inhibitor ZEN-3694, BET Inhibitor ABBV-744, BET Inhibitor BAY1238097, BET inhibitor BI 894999, BET Inhibitor BMS-986158, BET Inhibitor CC-90010, BET Inhibitor CPI-0610, BET Inhibitor FT-1101, BET Inhibitor GS-5829, BET Inhibitor GSK2820151, BET Inhibitor INCB054329, BET Inhibitor INCB057643, BET Inhibitor RO6870810, BET-bromodomain Inhibitor ODM-207, Beta Alethine, Beta-Carotene, Beta-elemene, Beta-Glucan, Beta-Glucan MM-10-001, Beta-lapachone Prodrug ARQ 761, Beta-Thioguanine Deoxyriboside, Betaglucin Gel, Betulinic Acid, Bevacizumab, Bexarotene, Bexmarilimab, BF-200 Gel Formulation, BH3 Mimetic ABT-737, Bi-functional Alkylating Agent VAL-083, Bicalutamide, Bimiralisib, Binetrakin, Binimetinib, Bintrafusp Alfa, Birabresib, Birinapant, Bis(choline)tetrathiomolybdate, Bisantrene, Bisantrene Hydrochloride, Bisnafide, Bisnafide Dimesylate, Bispecific Antibody 2B1, Bispecific Antibody AGEN1223, Bispecific Antibody AMG 509, Bispecific Antibody GS-1423, Bispecific Antibody MDX-H210, Bispecific Antibody MDX447, Bisthianostat, BiTE Antibody AMG 910, Bivalent BRD4 Inhibitor AZD5153, Bizalimogene Ralaplasmid, Bizelesin, BL22 Immunotoxin, Black Cohosh, Black Raspberry Nectar, Bleomycin, Bleomycin A2, Bleomycin B2, Bleomycin Sulfate, Blinatumomab, Blueberry Powder Supplement, BMI1 Inhibitor PTC596, BMS-184476, BMS-188797, BMS-214662, BMS-275183, Boanmycin Hydrochloride, Bomedemstat, Boronophenylalanine-Fructose Complex, Bortezomib, Bosutinib, Bosutinib Monohydrate, Botanical Agent BEL-X-HG, Botanical Agent LEAC-102, Bovine Cartilage, Bozitinib, BP-Cx1-Platinum Complex BP-C1, BR96-Doxorubicin Immunoconjugate, Brachyury-expressing Yeast Vaccine GI-6301, BRAF Inhibitor, BRAF Inhibitor ARQ 736, BRAF Inhibitor BGB-3245, BRAF Inhibitor PLX8394, BRAF(V600E) Kinase Inhibitor ABM-1310, BRAF(V600E) Kinase Inhibitor RO5212054, BRAF/EGFR Inhibitor BGB-283, BRAFV600/PI3K Inhibitor ASN003, BRD4 Inhibitor PLX2853, BRD4 Inhibitor PLX51107, Breflate, Brentuximab, Brentuximab Vedotin, Brequinar, Brequinar Sodium, Briciclib Sodium, Brigatinib, Brilanestrant, Brimonidine Tartrate Nanoemulsion OCU-300, Brivanib, Brivanib Alaninate, Brivudine, Brivudine Phosphoramidate, Broad-Spectrum Human Papillomavirus Vaccine V505, Broccoli Sprout/Broccoli Seed Extract Supplement, Bromacrylide, Bromebric Acid, Bromocriptine Mesylate, Brontictuzumab, Brostacillin Hydrochloride, Brostallicin, Broxuridine, Bruceanol A, Bruceanol B, Bruceanol C, Bruceanol D, Bruceanol E, Bruceanol F, Bruceanol G, Bruceanol H, Bruceantin, Bryostatin 1, BTK Inhibitor ARQ 531, BTK Inhibitor CT-1530, BTK Inhibitor DTRMWXHS-12, BTK Inhibitor HZ-A-018, BTK Inhibitor ICP-022, BTK Inhibitor LOXO-305, BTK Inhibitor M7583, BTK inhibitor TG-1701, Budigalimab, Budotitane, Bufalin, Buparlisib, Burixafor, Burixafor Hydrobromide, Burosumab, Buserelin, Bushen Culuan Decoction, Bushen-Jianpi Decoction, Busulfan, Buthionine Sulfoximine, BXQ-350 Nanovesicle Formulation, c-Kit Inhibitor PLX9486, c-Met Inhibitor ABN401, c-Met Inhibitor AL2846, c-Met Inhibitor AMG 208, c-Met Inhibitor AMG 337, c-Met Inhibitor GST-HG161, c-Met Inhibitor HS-10241, c-Met Inhibitor JNJ-38877605, c-Met Inhibitor MK2461, c-Met Inhibitor MK8033, c-Met Inhibitor MSC2156119J, C-myb Antisense Oligonucleotide G4460, c-raf Antisense Oligonucleotide ISIS 5132, C-VISA BikDD:Liposome, C/EBP Beta Antagonist ST101, CAB-ROR2-ADC BA3021, Cabazitaxel, Cabiralizumab, Cabozantinib, Cabozantinib S-malate, Cactinomycin, Caffeic Acid Phenethyl Ester, CAIX Inhibitor DTP348, CAIX Inhibitor SLC-0111, Calaspargase Pegol-mknl, Calcitriol, Calcium Release-activated Channel Inhibitor CM4620, Calcium Release-activated Channels Inhibitor RP4010, Calcium Saccharate, Calculus bovis/Moschus/Olibanum/Myrrha Capsule, Calicheamicin Gamma 1I, Camidanlumab Tesirine, Camptothecin, Camptothecin Analogue TLC388, Camptothecin Glycoconjugate BAY 38-3441, Camptothecin Sodium, Camptothecin-20(S)-O-Propionate Hydrate, Camrelizumab, Camsirubicin, Cancell, Cancer Peptide Vaccine S-588410, Canerpaturev, Canertinib Dihydrochloride, Canfosfamide, Canfosfamide Hydrochloride, Cannabidiol, Cantrixil, Cantuzumab Ravtansine, Capecitabine, Capecitabine Rapidly Disintegrating Tablet, Capivasertib, Capmatinib, Captopril, CAR T-Cells AMG 119, Caracemide, Carbendazim, Carbetimer, Carbogen, Carbon C 14-pamiparib, Carboplatin, Carboquone, Carboxyamidotriazole, Carboxyamidotriazole Orotate, Carboxyphenyl Retinamide, Carfilzomib, Caricotamide/Tretazicar, Carlumab, Carmofur, Carmustine, Carmustine Implant, Carmustine in Ethanol, Carmustine Sustained-Release Implant Wafer, Carotuximab, Carubicin, Carubicin Hydrochloride, Carzelesin, Carzinophilin, Cathelicidin LL-37, Cationic Liposome-Encapsulated Paclitaxel, Cationic Peptide Cream Cypep-1, Catumaxomab, CBP/beta-catenin Antagonist PRI-724, CBP/beta-catenin Modulator E7386, CCR2 Antagonist CCX872-B, CCR2 Antagonist PF-04136309, CCR2/CCR5 Antagonist BMS-813160, CCR4 Inhibitor FLX475, CD11b Agonist GB1275, CD123-CD33 Compound CAR T Cells, CD123-specific Targeting Module TM123, CD20-CD19 Compound CAR T Cells, CD28/ICOS Antagonist ALPN-101, CD4-specific Telomerase Peptide Vaccine UCPVax, CD40 Agonist Monoclonal Antibody CP-870;893, CD40 Agonistic Monoclonal Antibody APX005M, CD44 Targeted Agent SPL-108, CD44v6-specific CAR T-cells, CD47 Antagonist ALX148, CD73 Inhibitor AB680, CD73 Inhibitor LY3475070, CD80-Fc Fusion Protein ALPN-202, CD80-Fc Fusion Protein FPT155, CDC7 Inhibitor TAK-931, CDC7 Kinase Inhibitor BMS-863233, CDC7 Kinase Inhibitor LY3143921 Hydrate, CDC7 Kinase Inhibitor NMS-1116354, CDK Inhibitor AT7519, CDK Inhibitor R547, CDK Inhibitor SNS-032, CDK/JAK2/FLT3 Inhibitor TG02 Citrate, CDK1 Inhibitor BEY1107, CDK1/2/4 Inhibitor AG-024322, CDK2 Inhibitor PF-07104091, CDK2/4/6/FLT3 Inhibitor FN-1501, CDK2/5/9 Inhibitor CYC065, CDK4 Inhibitor P1446A-05, CDK4/6 Inhibitor, CDK4/6 Inhibitor BPI-16350, CDK4/6 Inhibitor CS3002, CDK4/6 Inhibitor FCN-437, CDK4/6 Inhibitor G1T38, CDK4/6 Inhibitor HS-10342, CDK4/6 Inhibitor SHR6390, CDK4/6 Inhibitor TQB3616, CDK7 Inhibitor CT7001, CDK7 Inhibitor SY-1365, CDK7 Inhibitor SY-5609, CDK8/19 Inhibitor SEL 120, CDK9 Inhibitor AZD4573, CEA-MUC-1-TRICOM Vaccine CV301, CEA-targeting Agent RG6123, CEBPA-targeting saRNA MTL-CEBPA Liposome, Cedazuridine, Cedazuridine/Azacitidine Combination Agent ASTX030, Cedazuridine/Decitabine Combination Agent ASTX727, Cedefingol, Cediranib, Cediranib Maleate, Celecoxib, Cell Cycle Checkpoint/DNA Repair Antagonist IC83, Cemadotin, Cemadotin Hydrochloride, Cemiplimab, Cenersen, Cenisertib, CENP-E Inhibitor GSK-923295, Ceralasertib, Ceramide Nanoliposome, Cerdulatinib, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282, Cereblon Modulator CC-90009, Cergutuzumab Amunaleukin, Ceritinib, Cesalin, cEt KRAS Antisense Oligonucleotide AZD4785, Cetrelimab, Cetuximab, Cetuximab Sarotalocan, Cetuximab-IR700 Conjugate RM-1929, Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY), Cevipabulin, Cevipabulin Fumarate, Cevipabulin Succinate, Cevostamab, cFMS Tyrosine Kinase Inhibitor ARRY-382, Chaparrin, Chaparrinone, Checkpoint Kinase Inhibitor AZD7762, Checkpoint Kinase Inhibitor XL844, Chemotherapy, Chiauranib, Chimeric Monoclonal Antibody 81C6, ChiNing Decoction, Chk1 Inhibitor CCT245737, Chk1 Inhibitor GDC-0425, Chk1 Inhibitor GDC-0575, CHK1 Inhibitor MK-8776, CHK1 Inhibitor PF-477736, Chlorambucil, Chlorodihydropyrimidine, Chloroquine, Chloroquinoxaline Sulfonamide, Chlorotoxin, Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes, Chlorozotocin, Choline Kinase Alpha Inhibitor TCD-717, CHP-NY-ESO-1 Peptide Vaccine IMF-001, Chromomycin A3, Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement, Cibisatamab, Ciclopirox Prodrug CPX-POM, Cidan Herbal Capsule, Ciforadenant, Cilengitide, Ciltacabtagene Autoleucel, Cimetidine, Cinacalcet Hydrochloride, Cinobufagin, Cinobufotalin, Cinrebafusp Alfa, Cintirorgon, Cintredekin Besudotox, Cirmtuzumab, cis-Urocanic Acid, Cisplatin, Cisplatin Liposomal, Cisplatin-E Therapeutic Implant, Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6, Citarinostat, Citatuzumab Bogatox, Cixutumumab, CK1alpha/CDK7/CDK9 Inhibitor BTX-A51, CK2-targeting Synthetic Peptide CIGB-300, CL 246738, Cladribine, Clanfenur, Clarithromycin, Class 1/4 Histone Deacetylase Inhibitor OKI-179, Clinical Trial, Clinical Trial Agent, Clioquinol, Clivatuzumab, Clodronate Disodium, Clodronic Acid, Clofarabine, Clomesone, Clomiphene, Clomiphene Citrate, Clostridium Novyi-NT Spores, Cobimetinib, Cobolimab, Cobomarsen, Codrituzumab, Coenzyme Q10, Cofetuzumab Pelidotin, Colchicine-Site Binding Agent ABT-751, Cold Contaminant-free Iobenguane I-131, Colloidal Gold-Bound Tumor Necrosis Factor, Colorectal Cancer Peptide Vaccine PolyPEPI1018, Colorectal Tumor-Associated Peptides Vaccine IMA910, Coltuximab Ravtansine, Combretastatin, Combretastatin A-1, Combretastatin A1 Diphosphate, Commensal Bacterial Strain Formulation VE800, Compound Kushen Injection, Conatumumab, Conbercept, Concentrated Lingzhi Mushroom Extract, Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011, Copanlisib, Copanlisib Hydrochloride, Copper Cu 64-ATSM, Copper Cu 67 Tyr3-octreotate, Copper Gluconate, Cord Blood Derived CAR T-Cells, Cord Blood-derived Expanded Natural Killer Cells PNK-007, Cordycepin, Cordycepin Triphosphate, Coriolus Versicolor Extract, Corticorelin Acetate, Cortisone Acetate, Cosibelimab, Cositecan, Coxsackievirus A21, Coxsackievirus V937, CpG Oligodeoxynucleotide GNKG168, Crenolanib, Crenolanib Besylate, Crizotinib, Crolibulin, Cryptophycin, Cryptophycin 52, Crystalline Genistein Formulation AXP107-11, CSF-1R Inhibitor BLZ945, CSF1R Inhibitor ABSK021, CSF1R Inhibitor DCC-3014, CSF1R Inhibitor PLX73086, CT2584 HMS, CTLA-4-directed Probody BMS-986249, Curcumin, Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110, Cusatuzumab, Custirsen Sodium, CXC Chemokine Receptor 2 Antagonist AZD5069, CXCR1/2 Inhibitor SX-682, CXCR2 Antagonist QBM076, CXCR4 Antagonist BL-8040, CXCR4 Antagonist USL311, CXCR4 Inhibitor Q-122, CXCR4 Peptide Antagonist LY2510924, CXCR4/E-selectin Antagonist GMI-1359, Cyclin-dependent Kinase 8/19 Inhibitor BCD 115, Cyclin-dependent Kinase Inhibitor PF-06873600, Cyclodextrin-Based Polymer-Camptothecin CRLX101, Cyclodisone, Cycloleucine, Cyclopentenyl Cytosine, Cyclophosphamide, Cyclophosphamide Anhydrous, Cyclosporine, CYL-02 Plasmid DNA, CYP11A1 inhibitor ODM-208, CYP11A1 Inhibitor ODM-209, CYP17 Inhibitor CFG920, CYP17 Lyase Inhibitor ASN001, CYP17/Androgen Receptor Inhibitor ODM 204, CYP17/CYP11B2 Inhibitor LAE001, Cyproterone, Cyproterone Acetate, Cytarabine, Cytarabine Monophosphate Prodrug MB07133, Cytarabine-asparagine Prodrug BST-236, Cytidine Analog RX-3117, Cytochlor, Cytokine-based Biologic Agent IRX-2, D-methionine Formulation MRX-1024, DAB389 Epidermal Growth Factor, Dabrafenib, Dabrafenib Mesylate, Dacarbazine, Dacetuzumab, DACH Polymer Platinate AP5346, DACH-Platin Micelle NC-4016, Daclizumab, Dacomitinib, Dacplatinum, Dactinomycin, Dactolisib, Dactolisib Tosylate, Dalantercept, Dalotuzumab, Daniquidone, Danusertib, Danvatirsen, Daporinad, Daratumumab, Daratumumab and Hyaluronidase-fihj, Daratumumab/rHuPH20, Darinaparsin, Darleukin, Darolutamide, Daromun, Dasatinib, Daunorubicin, Daunorubicin Citrate, Daunorubicin Hydrochloride, DEC-205/NY-ESO-1 Fusion Protein CDX-1401, Decitabine, Decitabine and Cedazuridine, Defactinib, Defactinib Hydrochloride, Deferoxamine, Deferoxamine Mesylate, Degarelix, Degarelix Acetate, Delanzomib, Delolimogene Mupadenorepvec, Demcizumab, Demecolcine, Demplatin Pegraglumer, Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466, Dendritic Cell Vaccine, Dendritic Cell-Autologous Lung Tumor Vaccine, Dendritic Cell-targeting Lentiviral Vector ID-LV305, Denenicokin, Dengue Virus Adjuvant PV-001-DV, Denibulin, Denibulin Hydrochloride, Denileukin Diftitox, Denintuzumab Mafodotin, Denosumab, Deoxycytidine Analogue TAS-109, Deoxycytidine Analogue TAS-109 Hydrochloride, Depatuxizumab, Depatuxizumab Mafodotin, Derazantinib, Deslorelin, Deslorelin Acetate, Detirelix, Detorubicin, Deuteporfin, Deuterated Enzalutamide, Devimistat, Dexamethason, Dexamethasone, Dexamethasone Phosphate, Dexamethasone Sodium Phosphate, Dexanabinol, Dexrazoxane, Dexrazoxane Hydrochloride, Dezaguanine, Dezaguanine Mesylate, Dezapelisib, DHA-Paclitaxel, DHEA Mustard, DI-Leu16-IL2 Immunocytokine, Dianhydrogalactitol, Diarylsulfonylurea Compound ILX-295501, Diazepinomicin, Diaziquone, Diazooxonorleucine, Dibrospidium Chloride, Dichloroallyl Lawsone, Dicycloplatin, Didox, Dienogest, Diethylnorspermine, Digitoxin, Digoxin, Dihydro-5-Azacytidine, Dihydrolenperone, Dihydroorotate Dehydrogenase Inhibitor AG-636, Dihydroorotate Dehydrogenase Inhibitor BAY2402234, Diindolylmethane, Dilpacimab, Dimethylmyleran, Dinaciclib, Dinutuximab, Dioscorea nipponica Makino Extract DNE3, Diphencyprone, Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777, Ditiocarb, DKK1-Neutralizing Monoclonal Antibody DKN-01, DM-CHOC-PEN, DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015, DNA Interference Oligonucleotide PNT2258, DNA Minor Groove Binding Agent SG2000, DNA Plasmid Encoding Interleukin-12 INO-9012, DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151, DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457, DNA Vaccine VB10.16, DNA-dependent Protein Kinase Inhibitor VX-984, DNA-PK inhibitor AZD7648, DNA-PK/PI3K-delta Inhibitor BR101801, DNA-PK/TOR Kinase Inhibitor CC-115, DNMT1 Inhibitor NTX-301, DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98, Docetaxel, Docetaxel Anhydrous, Docetaxel Emulsion ANX-514, Docetaxel Formulation CKD-810, Docetaxel Lipid Microspheres, Docetaxel Nanoparticle CPC634, Docetaxel Polymeric Micelles, Docetaxel-loaded Nanopharmaceutical CRLX301, Docetaxel-PNP, Docetaxel/Ritonavir, Dociparstat sodium, Dolastatin 10, Dolastatin 15, Domatinostat, Donafenib, Dopamine-Somatostatin Chimeric Molecule BIM-23A760, Dostarlimab, Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703, Dovitinib, Dovitinib Lactate, Doxazosin, Doxercalciferol, Doxifluridine, Doxorubicin, Doxorubicin Hydrochloride, Doxorubicin Prodrug L-377;202, Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370, Doxorubicin-Eluting Beads, Doxorubicin-HPMA Conjugate, Doxorubicin-loaded EGFR-targeting Nanocells, Doxorubicin-Magnetic Targeted Carrier Complex, DPT/BCG/Measles/Serratia/Pneumococcus Vaccine, DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine, DPX-E7 HPV Vaccine, DR5 HexaBody Agonist GEN1029, DR5-targeting Tetrameric Nanobody Agonist TAS266, Dromostanolone Propionate, Drozitumab, DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555, Dual IGF-1R/InsR Inhibitor BMS-754807, Dual Variable Domain Immunoglobulin ABT-165, Dual-affinity B7-H3/CD3-targeted Protein MGD009, Dubermatinib, Duborimycin, Dulanermin, Duligotuzumab, Dupilumab, Durvalumab, Dusigitumab, dUTPase/DPD Inhibitor TAS-114, Duvelisib, Duvortuxizumab, Dynemicin, Dynemicin A, E2F1 Pathway Activator ARQ 171, EBNA-1 inhibitor VK-2019, Echinomycin, Ecromeximab, Edatrexate, Edelfosine, Edicotinib, Edodekin alfa, Edotecarin, Edrecolomab, EED Inhibitor MAK683, Efatutazone, Efatutazone Dihydrochloride, Efizonerimod, Eflornithine, Eflornithine Hydrochloride, Eftilagimod Alpha, Eftozanermin Alfa, Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205, Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621, EGb761, EGFR Antagonist Hemay022, EGFR Antisense DNA BB-401, EGFR Inhibitor AZD3759, EGFR Inhibitor BIBX 1382, EGFR Inhibitor DBPR112, EGFR Inhibitor PD-168393, EGFR Inhibitor TY-9591, EGFR Mutant-selective Inhibitor TQB3804, EGFR Mutant-specific Inhibitor BPI-7711, EGFR Mutant-specific Inhibitor CK-101, EGFR Mutant-specific Inhibitor D-0316, EGFR Mutant-specific Inhibitor ZN-e4, EGFR T790M Antagonist BPI-15086, EGFR T790M Inhibitor HS-10296, EGFR/EGFRvIII Inhibitor WSD0922-FU, EGFR/FLT3/Abl Inhibitor SKLB1028, EGFR/HER1/HER2 Inhibitor PKI166, EGFR/HER2 Inhibitor AP32788, EGFR/HER2 Inhibitor AV-412, EGFR/HER2 Inhibitor DZD9008, EGFR/HER2 Kinase Inhibitor TAK-285, EGFR/TGFb Fusion Monoclonal Antibody BCA101, EGFR/VEGFR/RET Inhibitor HA121-28, Eicosapentaenoic Acid, eIF4E Antisense Oligonucleotide ISIS 183750, Elacestrant, Elacytarabine, Elagolix, Elbasvir/Grazoprevir, Elesclomol, Elesclomol Sodium, Elgemtumab, Elinafide, Elisidepsin, Elliptinium, Elliptinium Acetate, Elmustine, Elotuzumab, Elpamotide, Elsamitrucin, Eltanexor, Emactuzumab, Emapalumab, Emepepimut-S, Emibetuzumab, Emitefur, Emofolin Sodium, Empesertib, Enadenotucirev, Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A, Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641, Enasidenib, Enasidenib Mesylate, Enavatuzumab, Encapsulated Rapamycin, Encelimab, Enclomiphene, Enclomiphene Citrate, Encorafenib, Endothelin B Receptor Blocker ENB 003, Endothelin Receptor Type A Antagonist YM598, Enfortumab Vedotin, Engineered Human Umbilical Vein Endothelial Cells AB-205, Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240, Engineered Toxin Body Targeting CD38 TAK-169, Engineered Toxin Body Targeting HER2 MT-5111, Eniluracil/5-FU Combination Tablet, Enloplatin, Enoblituzumab, Enobosarm, Enoticumab, Enpromate, Ensartinib, Ensituximab, Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride, Enterococcus gallinarum Strain MRx0518, Entinostat, Entolimod, Entospletinib, Entrectinib, Envafolimab, Enzalutamide, Enzastaurin, Enzastaurin Hydrochloride, EP2/EP4 Antagonist TPST-1495, EP4 Antagonist INV-1120, EP4 Antagonist ONO-4578, Epacadostat, Epcoritamab, EphA2-targeting Bicycle Toxin Conjugate BT5528, Epipodophyllotoxin Analog GL331, Epipropidine, Epirubicin, Epirubicin Hydrochloride, Epitinib Succinate, Epitiostanol, Epothilone Analog UTD1, Epothilone KOS-1584, Epratuzumab, Epratuzumab-cys-tesirine, ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471, ERa36 Modulator Icaritin, Erastin Analogue PRLX 93936, Erbulozole, Erdafitinib, Eribulin, Eribulin Mesylate, ERK 1/2 Inhibitor ASTX029, ERK Inhibitor CC-90003, ERK Inhibitor GDC-0994, ERK Inhibitor LTT462, ERK Inhibitor MK-8353, ERK1/2 Inhibitor ASN007, ERK1/2 Inhibitor HH2710, ERK1/2 Inhibitor JSI-1187, ERK1/2 Inhibitor KO-947, ERK1/2 Inhibitor LY3214996, Erlotinib, Erlotinib Hydrochloride, Ertumaxomab, Erythrocyte-encapsulated L-asparaginase Suspension, Esorubicin, Esorubicin Hydrochloride, Esperamicin A1, Essiac, Esterified Estrogens, Estradiol Valerate, Estramustine, Estramustine Phosphate Sodium, Estrogen Receptor Agonist GTx-758, Estrogens; Conjugated, Etalocib, Etanercept, Etanidazole, Etaracizumab, Etarotene, Ethaselen, Ethinyl Estradiol, Ethyleneimine, Ethylnitrosourea, Etidronate-Cytarabine Conjugate MBC-11, Etigilimab, Etirinotecan Pegol, Etoglucid, Etoposide, Etoposide Phosphate, Etoposide Toniribate, Etoprine, Etoricoxib, Ets-family Transcription Factor Inhibitor TK216, Everolimus, Everolimus Tablets for Oral Suspension, Evofosfamide, Ex Vivo-expanded Autologous T Cells IMA101, Exatecan Mesylate, Exatecan Mesylate Anhydrous, Exemestane, Exicorilant, Exisulind, Extended Release Flucytosine, Extended Release Metformin Hydrochloride, Extended-release Onapristone, Ezabenlimab, EZH1/2 Inhibitor DS-3201, EZH1/2 Inhibitor HH2853, EZH2 inhibitor CPI-0209, EZH2 Inhibitor CPI-1205, EZH2 Inhibitor PF-06821497, EZH2 Inhibitor SHR2554, F16-IL2 Fusion Protein, FACT Complex-targeting Curaxin CBL0137, Factor VII-targeting Immunoconjugate Protein ICON-1, Factor VIIa Inhibitor PCI-27483, Fadraciclib, Fadrozole Hydrochloride, FAK Inhibitor GSK2256098, FAK Inhibitor PF-00562271, FAK Inhibitor VS-4718, FAK/ALK/ROS1 Inhibitor APG-2449, Falimarev, Famitinib, FAP/4-1BB-targeting DARPin MP0310, FAP/4-1BB-targeting Fusion Protein RO7122290, Farletuzumab, Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123, Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells, Fas Receptor Agonist APO010, Fascin Inhibitor NP-G2-044, FASN Inhibitor TVB-2640, Favezelimab, Fazarabine, Fc-engineered Anti-CD40 Agonist Antibody 2141-V11, Febuxostat, Fedratinib, Fedratinib Hydrochloride, Feladilimab, Felzartamab, Fenebrutinib, Fenretinide, Fenretinide Lipid Matrix, Fenretinide Phospholipid Suspension ST-001, FGF Receptor Antagonist HGS1036, FGF/FGFR Pathway Inhibitor E7090, FGFR Inhibitor ASP5878, FGFR Inhibitor AZD4547, FGFR Inhibitor CPL304110, FGFR Inhibitor Debio 1347, FGFR Inhibitor TAS-120, FGFR/CSF-1R Inhibitor 3D185, FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999, FGFR1/2/3 Inhibitor HMPL-453, FGFR2 Inhibitor RLY-4008, FGFR4 Antagonist INCB062079, FGFR4 Inhibitor BLU 9931, FGFR4 Inhibitor FGF401, FGFR4 Inhibitor H3B-6527, FGFR4 Inhibitor ICP-105, Fianlimab, Fibromun, Ficlatuzumab, Figitumumab, Filanesib, Filgotinib, Filgrastim, Fimaporfin A, Fimepinostat, Firtecan Pegol, Fisogatinib, Flanvotumab, Flotetuzumab, Floxuridine, FLT3 Inhibitor FF-10101 Succinate, FLT3 Inhibitor HM43239, FLT3 Inhibitor SKI-G-801, Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01, FLT3 Tyrosine Kinase Inhibitor TTT-3002, FLT3/ABL/Aurora Kinase Inhibitor KW-2449, FLT3/CDK4/6 Inhibitor FLX925, FLT3/FGFR Dual Kinase Inhibitor MAX-40279, FLT3/KIT Kinase Inhibitor AKN-028, FLT3/KIT/CSF1R Inhibitor NMS-03592088, Flt3/MerTK Inhibitor MRX-2843, Fludarabine, Fludarabine Phosphate, Flumatinib, Flumatinib Mesylate, Fluorine F 18 Ara-G, Fluorodopan, Fluorouracil, Fluorouracil Implant, Fluorouracil-E Therapeutic Implant, Fluoxymesterone, Flutamide, Fluvastatin, Fluvastatin Sodium, Fluzoparib, FMS Inhibitor JNJ-40346527, Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate, Folate Receptor Targeted Epothilone BMS753493, Folate Receptor-Targeted Tubulysin Conjugate EC1456, Folate Receptor-Targeted Vinca Alkaloid EC0489, Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225, Folate-FITC, Folic Acid, Folitixorin, Foretinib, Foritinib Succinate, Formestane, Forodesine Hydrochloride, Fosaprepitant, Fosbretabulin, Fosbretabulin Disodium, Fosbretabulin Tromethamine, Fosgemcitabine Palabenamide, Fosifloxuridine Nafalbenamide, Foslinanib, Foslinanib Disodium, Fosquidone, Fostriecin, Fotemustine, Fotretamine, FPV Vaccine CV301, FPV-Brachyury-TRICOM Vaccine, Fresolimumab, Fruquintinib, Fulvestrant, Fumagillin-Derived Polymer Conjugate XMT-1107, Fursultiamine, Futibatinib, Futuximab, Futuximab/Modotuximab Mixture, G Protein-coupled Estrogen Receptor Agonist LNS8801, G-Quadruplex Stabilizer BMVC, Galamustine, Galarubicin, Galectin Inhibitor GR-MD-02, Galectin-1 Inhibitor OTX008, Galeterone, Galiximab, Gallium-based Bone Resorption Inhibitor AP-002, Galocitabine, Galunisertib, Gamboge Resin Extract TSB-9-W1, Gamma-delta Tocotrienol, Gamma-Secretase Inhibitor LY3039478, Gamma-Secretase Inhibitor RO4929097, Gandotinib, Ganetespib, Ganglioside GD2, Ganglioside GM2, Ganitumab, Ganoderma lucidum Spores Powder Capsule, Garlic, Gastrin Immunotoxin, Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360, Gataparsen Sodium, Gatipotuzumab, GBM Antigens and Alloantigens Immunotherapeutic Vaccine, Gedatolisib, Gefitinib, Geldanamycin, Gelonin, Gemcitabine, Gemcitabine Elaidate, Gemcitabine Hydrochloride, Gemcitabine Hydrochloride Emulsion, Gemcitabine Prodrug LY2334737, Gemcitabine-Phosphoramidate Hydrochloride NUC-1031, Gemcitabine-Releasing Intravesical System, Gemtuzumab Ozogamicin, Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum, Genistein, Gentuximab, Geranylgeranyltransferase I Inhibitor, GI-4000 Vaccine, Giloralimab, Gilteritinib, Gilteritinib Fumarate, Gimatecan, Gimeracil, Ginsenoside Rg3 Capsule, Giredestrant, Girentuximab, Girodazole, GITR Agonist MEDI1873, Givinostat, Glasdegib, Glasdegib Maleate, Glaucarubolone, Glecaprevir/Pibrentasvir, Glembatumumab Vedotin, Glesatinib, Glioblastoma Cancer Vaccine ERC1671, Glioblastoma Multiforme Multipeptide Vaccine IMA950, Glioma Lysate Vaccine GBM6-AD, Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701, Globo H-DT Vaccine OBI-833, Glofitamab, Glucarpidase, Glucocorticoid Receptor Antagonist ORIC-101, Glufosfamide, Glumetinib, Glutaminase Inhibitor CB-839, Glutaminase Inhibitor CB-839 Hydrochloride, Glutaminase Inhibitor IPN60090, Glutamine Antagonist DRP-104, Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101, Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01, Glycooptimized Trastuzumab-GEX, GM-CSF-encoding Oncolytic Adenovirus CGTG-102, Gold Sodium Thiomalate, Golnerminogene Pradenovec, Golotimod, Golvatinib, Gonadotropin-releasing Hormone Analog, Goserelin, Goserelin Acetate, Goserelin Acetate Extended-release Microspheres LY01005, Gossypol, Gossypol Acetic Acid, Grapiprant, Green Tea Extract-based Antioxidant Supplement, GS/pan-Notch Inhibitor AL101, GS/pan-Notch Inhibitor BMS-986115, GSK-3 Inhibitor 9-ING-41, GSK-3 Inhibitor LY2090314, Guadecitabine, Guanabenz Acetate, Guselkumab, Gusperimus Trihydrochloride, Gutolactone, H-ras Antisense Oligodeoxynucleotide ISIS 2503, H1299 Tumor Cell Lysate Vaccine, HAAH Lambda phage Vaccine SNS-301, Hafnium Oxide-containing Nanoparticles NBTXR3, Halichondrin Analogue E7130, Halichondrin B, Halofuginone, Halofuginone Hydrobromide, HCV DNA Vaccine INO-8000, HDAC Class I/IIb Inhibitor HG146, HDAC Inhibitor AR-42, HDAC inhibitor CG200745, HDAC Inhibitor CHR-2845, HDAC Inhibitor CKD-581, HDAC Inhibitor CXD101, HDAC Inhibitor MPT0E028, HDAC Inhibitor OBP-801, HDAC/EGFR/HER2 Inhibitor CUDC-101, HDAC6 Inhibitor KA2507, HDAC8 Inhibitor NBM-BMX, HDM2 Inhibitor HDM201, HDM2 Inhibitor MK-8242, Hedgehog Inhibitor IPI-609, Hematoporphyrin Derivative, Hemiasterlin Analog E7974, Henatinib Maleate, Heparan Sulfate Glycosaminoglycan Mimetic M402, Heparin Derivative SST0001, HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131, HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901, HER2 Inhibitor CP-724;714, HER2 Inhibitor DZD1516, HER2 Inhibitor TAS0728, HER2 Tri-specific Natural Killer Cell Engager DF1001, HER2-directed TLR8 Agonist SBT6050, HER2-targeted DARPin MP0274, HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302, HER2-targeting Antibody Fc Fragment FS102, Herba Scutellaria Barbata, Herbimycin, Heterodimeric Interleukin-15, Hexamethylene Bisacetamide, Hexaminolevulinate, Hexylresorcinol, HIF-1alpha Inhibitor PX-478, HIF-2alpha Inhibitor PT2385, HIF-2alpha Inhibitor PT2977, HIF2a RNAi ARO-HIF2, Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126, Histrelin Acetate, HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001, HLA-A*2402-Restricted Multipeptide Vaccine S-488410, HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201, HM2/MMAE Antibody-Drug Conjugate ALT-P7, Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine, Holmium Ho 166 Poly(L-Lactic Acid) Microspheres, Hormone Therapy, HPPH, HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202, HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c, HPV DNA Plasmids Therapeutic Vaccine VGX-3100, HPV E6/E7 DNA Vaccine GX-188E, HPV E6/E7-encoding Arenavirus Vaccine HB-201, HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C, HPV-16 E6 Peptides Vaccine/Candida albicans Extract, HPV-6-targeting Immunotherapeutic Vaccine INO-3106, HPV16 E7-specific HLA-A*02:01-restricted IgG1-Fc Fusion Protein CUE-101, HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN, HPV6/11-targeted DNA Plasmid Vaccine INO-3107, Hsp90 Antagonist KW-2478, Hsp90 Inhibitor AB-010, Hsp90 Inhibitor BIIB021, Hsp90 Inhibitor BIIB028, Hsp90 Inhibitor Debio 0932, Hsp90 Inhibitor DS-2248, Hsp90 Inhibitor HSP990, Hsp90 Inhibitor MPC-3100, Hsp90 Inhibitor PU-H71, Hsp90 Inhibitor SNX-5422 Mesylate, Hsp90 Inhibitor SNX-5542 Mesylate, Hsp90 Inhibitor TQB3474, Hsp90 Inhibitor XL888, Hsp90-targeted Photosensitizer HS-201, HSP90-targeted SN-38 Conjugate PEN-866, HSP90alpha/beta Inhibitor TAS-116, hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301, hTERT Vaccine V934/V935, hTERT-encoding DNA Vaccine INVAC-1, Hu14.18-IL2 Fusion Protein EMD 273063, HuaChanSu, Huaier Extract Granule, Huang Lian, huBC1-huIL12 Fusion Protein AS1409, Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736, Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104, Human MOAB LICO 28a32, Human Monoclonal Antibody 216, Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307, Human Papillomavirus 16 E7 Peptide/Padre 965.10, Hyaluronidase-zzxf/Pertuzumab/Trastuzumab, Hycanthone, Hydralazine Hydrochloride, Hydrocortisone Sodium Succinate, Hydroxychloroquine, Hydroxyprogesterone Caproate, Hydroxytyrosol, Hydroxyurea, Hypericin, Hypoxia-activated Prodrug TH-4000, I 131 Antiferritin Immunoglobulin, I 131 Monoclonal Antibody A33, I 131 Monoclonal Antibody CC49, I 131 Monoclonal Antibody F19, I 131 Monoclonal Antibody Lym-1, Iadademstat, Ianalumab, IAP Inhibitor APG-1387, IAP Inhibitor AT-406, IAP Inhibitor HGS1029, Ibandronate Sodium, Iberdomide, Iboctadekin, Ibritumomab Tiuxetan, Ibrutinib, Icotinib Hydrochloride, Icrucumab, ICT-121 Dendritic Cell Vaccine, Idarubicin, Idarubicin Hydrochloride, Idarubicin-Eluting Beads, Idasanutlin, Idecabtagene Vicleucel, Idelalisib, Idetrexed, IDH1 Mutant Inhibitor LY3410738, IDH1(R132) Inhibitor IDH305, IDH1R132H-Specific Peptide Vaccine PEPIDH1M, Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020, IDO Peptide Vaccine IO102, IDO-1 Inhibitor LY3381916, IDO/TDO Inhibitor HTI-1090, IDO/TDO Inhibitor LY-01013, IDO1 Inhibitor KHK2455, IDO1 Inhibitor MK-7162, IDO1 Inhibitor PF-06840003, IDO1/TDO2 Inhibitor DN1406131, IDO1/TDO2 Inhibitor M4112, Idronoxil, Idronoxil Suppository NOX66, Ieramilimab, Ifabotuzumab, Ifetroban, Ifosfamide, IGF-1R Inhibitor, IGF-1R Inhibitor PL225B, IGF-1R/IR Inhibitor KW-2450, IGF-methotrexate Conjugate, IL-10 Immunomodulator MK-1966, IL-12-expressing HSV-1 NSC 733972, IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051, IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000, IL-2 Recombinant Fusion Protein ALT-801, IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1, IL4-Pseudomonas Exotoxin Fusion Protein MDNA55, Ilginatinib, Ilixadencel, Iloprost, Ilorasertib, Imalumab, Imaradenant, Imatinib, Imatinib Mesylate, Imetelstat, Imetelstat Sodium, Imexon, Imgatuzumab, Imidazole Mustard, Imidazole-Pyrazole, Imifoplatin, Imipramine Blue, Imiquimod, Immediate-release Onapristone, Immediate-release Tablet Afuresertib, Immune Checkpoint Inhibitor ASP8374, Immunoconjugate RO5479599, Immunocytokine NHS-IL12, Immunocytokine NHS-IL2-LT, Immunomodulator LAM-003, Immunomodulator OHR/AVR118, Immunomodulatory Agent CC-11006, Immunomodulatory Oligonucleotide HYB2055, Immunotherapeutic Combination Product CMB305, Immunotherapeutic GSK1572932A, Immunotherapy Regimen MKC-1106-MT, Immunotoxin CMD-193, IMT-1012 Immunotherapeutic Vaccine, Inactivated Oncolytic Virus Particle GEN0101, Inalimarev, Incyclinide, Indatuximab Ravtansine, Indibulin, Indicine-N-Oxide, Indisulam, Individualized MVA-based Vaccine TG4050, Indocyanine Green-labeled Polymeric Micelles ONM-100, Indole-3-Carbinol, Indomethacin, Indoximod, Indoximod Prodrug NLG802, Indusatumab Vedotin, Inebilizumab, Inecalcitol, Infigratinib, Infigratinib Mesylate, Infliximab, Ingenol Mebutate, Ingenol Mebutate Gel, Iniparib, iNKT Cell Agonist ABX196, Innate Immunostimulator rBBX-01, INO-1001, Inodiftagene Vixteplasmid, iNOS Dimerization Inhibitor ASP9853, Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01, Inosine Monophosphate Dehydrogenase Inhibitor AVN944, Inositol, Inotuzumab Ozogamicin, Inproquone, Integrin alpha-2 Inhibitor E7820, Integrin Receptor Antagonist GLPG0187, Interferon, Interferon Alfa-2B, Interferon Alfa-N1, Interferon Alfa-N3, Interferon Alfacon-1, Interferon Beta-1A, Interferon Gamma-1b, Interferon-gamma-expressing Adenovirus Vaccine ASN-002, Interleukin Therapy, Interleukin-12-Fc Fusion Protein DF6002, Interleukin-15 Agonist Fusion Protein SHR1501, Interleukin-15 Fusion Protein BJ-001, Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306, Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101, Interleukin-2 Liposome, Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230, Intetumumab, Intiquinatine, Intoplicine, Inulin, Iobenguane I-131, Iodine I 124 Monoclonal Antibody A33, Iodine I 124 Monoclonal Antibody M5A, Iodine I 125-Anti-EGFR-425 Monoclonal Antibody, Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP, Iodine I 131 Apamistamab, Iodine I 131 Derlotuximab Biotin, Iodine I 131 Ethiodized Oil, Iodine I 131 IPA, Iodine I 131 MIP-1095, Iodine I 131 Monoclonal Antibody 81C6, Iodine I 131 Monoclonal Antibody BC8, Iodine I 131 Monoclonal Antibody CC49-deltaCH2, Iodine I 131 Monoclonal Antibody F16SIP, Iodine I 131 Monoclonal Antibody G-250, Iodine I 131 Monoclonal Antibody muJ591, Iodine I 131 Omburtamab, Iodine I 131 Rituximab, Iodine I 131 Tenatumomab, Iodine I 131 TM-601, Iodine I 131 Tositumomab, Iodine I-131, Ioflubenzamide I-131, Ionomycin, Ipafricept, Ipatasertib, Ipilimumab, Ipomeanol, Iproplatin, iPSC-derived CD16-expressing Natural Killer Cells FT516, iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596, iPSC-derived Natural Killer Cells FT500, IRAK4 Inhibitor CA-4948, Iratumumab, Iridium Ir 192, Irinotecan, Irinotecan Hydrochloride, Irinotecan Sucrosofate, Irinotecan-Eluting Beads, Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet, Irofulven, Iroplact, Irosustat, Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130, Isatuximab, Iso-fludelone, Isobrucein B, Isocoumarin NM-3, Isotretinoin, Ispinesib, Ispinesib Mesylate, ISS 1018 CpG Oligodeoxynucleotide, Istiratumab, Itacitinib, Itacitinib Adipate, ITK Inhibitor CPI-818, Itraconazole, Itraconazole Dispersion In Polymer Matrix, Ivaltinostat, Ivosidenib, Ivuxolimab, Ixabepilone, Ixazomib, Ixazomib Citrate, JAK Inhibitor, JAK Inhibitor INCB047986, JAK1 Inhibitor AZD4205, JAK1 Inhibitor INCB052793, JAK2 Inhibitor AZD1480, JAK2 Inhibitor BMS-911543, JAK2 Inhibitor XL019, JAK2/Src Inhibitor NS-018, Jin Fu Kang, JNK Inhibitor CC-401, Kanglaite, Kanitinib, Ketoconazole, Ketotrexate, KRAS G12C Inhibitor GDC-6036, KRAS G12C Inhibitor LY3499446, KRAS G12C Inhibitor MRTX849, KRAS Mutant-targeting AMG 510, KRAS-MAPK Signaling Pathway Inhibitor JAB-3312, KRASG12C Inhibitor JNJ-74699157, KRN5500, KSP Inhibitor AZD4877, KSP Inhibitor SB-743921, Kunecatechins Ointment, L-Gossypol, L-methylfolate, Labetuzumab Govitecan, Lactoferrin-derived Lytic Peptide LTX-315, Lacutamab, Ladiratuzumab Vedotin, Ladirubicin, Laetrile, LAIR-2 Fusion Protein NC410, Landogrozumab, Laniquidar, Lanreotide Acetate, Lapachone, Lapatinib, Lapatinib Ditosylate, Laprituximab Emtansine, Lapuleucel-T, Laromustine, Larotaxel, Larotinib Mesylate, Larotrectinib, Larotrectinib Sulfate, Lavendustin A, Lazertinib, Lead Pb 212 TCMC-trastuzumab, Lefitolimod, Leflunomide, Lenalidomide, Lenalidomide Analog KPG-121, Lentinan, Lenvatinib, Lenvatinib Mesylate, Lenzilumab, Lerociclib, Lestaurtinib, Letetresgene Autoleucel, Letolizumab, Letrozole, Leucovorin, Leucovorin Calcium, Leuprolide, Leuprolide Acetate, Leuprolide Mesylate Injectable Suspension, Leurubicin, Levetiracetam, Levoleucovorin Calcium, Levothyroxine, Levothyroxine Sodium, Lexatumumab, Lexibulin, Liarozole, Liarozole Fumarate, Liarozole Hydrochloride, Licartin, Licorice, Lifastuzumab Vedotin, Lifileucel, Lifirafenib, Light-activated AU-011, Light-Emitting Oncolytic Vaccinia Virus GL-ONC1, Lilotomab, Limonene; (+)-, Limonene; (+/-)-, Linifanib, Linoleyl Carbonate-Paclitaxel, Linperlisib, Linrodostat, Linsitinib, Lintuzumab, Liothyronine I-131, Liothyronine Sodium, Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1, Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191, Lipid Nanoparticle Encapsulated OX40L mRNA-2416, Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006, Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752, Liposomal Bcl-2 Antisense Oligonucleotide BP1002, Liposomal c-raf Antisense Oligonucleotide, Liposomal Curcumin, Liposomal Cytarabine, Liposomal Daunorubicin Citrate, Liposomal Docetaxel, Liposomal Eribulin Mesylate, Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101, Liposomal Irinotecan, Liposomal Mitoxantrone Hydrochloride, Liposomal MUC1/PET-lipid A Vaccine ONT-10, Liposomal NDDP, Liposomal Rhenium Re 186, Liposomal SN-38, Liposomal Topotecan FF-10850, Liposomal Vinorelbine, Liposomal Vinorelbine Tartrate, Liposome, Liposome-encapsulated Daunorubicin-Cytarabine, Liposome-Encapsulated Doxorubicin Citrate, Liposome-encapsulated miR-34 Mimic MRX34, Liposome-encapsulated OSI-7904, Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94, Liposome-encapsulated TAAs mRNA Vaccine W_ova1, Lirilumab, Lisavanbulin, Lisocabtagene Maraleucel, Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142, Litronesib, Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809, Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207, Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623, Liver X Receptor beta Agonist RGX-104, Lm-tLLO-neoantigens Vaccine ADXS-NEO, LMB-1 Immunotoxin, LMB-2 Immunotoxin, LMB-7 Immunotoxin, LMB-9 Immunotoxin, LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164, LMP-2:340-349 Peptide Vaccine, LMP-2:419-427 Peptide Vaccine, LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes, LMP7 Inhibitor M3258, Lobaplatin, Lodapolimab, Lometrexol, Lometrexol Sodium, Lomustine, Lonafarnib, Loncastuximab Tesirine, Long Peptide Vaccine 7, Long-acting Release Pasireotide, Lontucirev, Lorlatinib, Lorukafusp alfa, Lorvotuzumab Mertansine, Losatuxizumab Vedotin, Losoxantrone, Losoxantrone Hydrochloride, Lovastatin, LOXL2 Inhibitor PAT-1251, LRP5 Antagonist BI 905681, LRP5/6 Antagonist BI 905677, LSD1 Inhibitor CC-90011, LSD1 Inhibitor GSK2879552, LSD1 Inhibitor IMG-7289, LSD1 Inhibitor RO7051790, LSD1 Inhibitor SYHA1807, Lucanthone, Lucatumumab, Lucitanib, Luminespib, Luminespib Mesylate, Lumretuzumab, Lung-targeted Immunomodulator QBKPN, Lupartumab Amadotin, Lurbinectedin, Lurtotecan, Lurtotecan Liposome, Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1, Lutetium Lu 177 DOTA-biotin, Lutetium Lu 177 DOTA-N3-CTT1403, Lutetium Lu 177 DOTA-Tetulomab, Lutetium Lu 177 Dotatate, Lutetium Lu 177 Lilotomab-satetraxetan, Lutetium Lu 177 Monoclonal Antibody CC49, Lutetium Lu 177 Monoclonal Antibody J591, Lutetium Lu 177 PP-F11N, Lutetium Lu 177 Satoreotide Tetraxetan, Lutetium Lu 177-DOTA-EB-TATE, Lutetium Lu 177-DTPA-omburtamab, Lutetium Lu 177-Edotreotide, Lutetium Lu 177-NeoB, Lutetium Lu 177-PSMA-617, Lutetium Lu-177 Capromab, Lutetium Lu-177 Girentuximab, Lutetium Lu-177 PSMA-R2, Lutetium Lu-177 Rituximab, LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1, Lyophilized Black Raspberry Lozenge, Lyophilized Black Raspberry Saliva Substitute, Lysine-specific Demethylase 1 Inhibitor INCB059872, Lyso-Thermosensitive Liposome Doxorubicin, Maackia amurensis Seed Lectin, Macimorelin, Macitentan, Macrocycle-bridged STING Agonist E7766, Maekmoondong-tang, Mafosfamide, MAGE-10.A2, MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells, MAGE-A3 Multipeptide Vaccine GL-0817, MAGE-A3 Peptide Vaccine, MAGE-A3-specific Immunotherapeutic GSK 2132231A, MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201, Magnesium Valproate, Magrolimab, MALT1 Inhibitor JNJ-67856633, Manelimab, Mannosulfan, Mannosylerythritol Lipid, Mapatumumab, Maraba Oncolytic Virus Expressing Mutant HPV E6/E7, Marcellomycin, MARCKS Protein Inhibitor BIO-11006, Margetuximab, Marimastat, Marizomib, Masitinib Mesylate, Masoprocol, MAT2A Inhibitor AG-270, Matrix Metalloproteinase Inhibitor MMI270, Matuzumab, Mavelertinib, Mavorixafor, Maytansine, MCL-1 Inhibitor ABBV-467, MCL-1 Inhibitor AMG 176, MCL-1 inhibitor AMG 397, Mcl-1 Inhibitor AZD5991, Mcl-1 Inhibitor MIK665, MDM2 Antagonist ASTX295, MDM2 Antagonist RO5045337, MDM2 Antagonist RO6839921, MDM2 Inhibitor AMG-232, MDM2 Inhibitor AMGMDS3, MDM2 Inhibitor BI 907828, MDM2 Inhibitor KRT-232, MDM2/MDMX Inhibitor ALRN-6924, MDR Modulator CBT-1, Mechlorethamine, Mechlorethamine Hydrochloride, Mechlorethamine Hydrochloride Gel, Medorubicin, Medroxyprogesterone, Medroxyprogesterone Acetate, Megestrol Acetate, MEK 1/2 Inhibitor AS703988/MSC2015103B, MEK 1/2 Inhibitor FCN-159, MEK Inhibitor AZD8330, MEK Inhibitor CI-1040, MEK inhibitor CS3006, MEK Inhibitor GDC-0623, MEK Inhibitor HL-085, MEK Inhibitor PD0325901, MEK Inhibitor RO4987655, MEK Inhibitor SHR 7390, MEK Inhibitor TAK-733, MEK Inhibitor WX-554, MEK-1/MEKK-1 Inhibitor E6201, MEK/Aurora Kinase Inhibitor BI 847325, Melanoma Monoclonal Antibody hIgG2A, Melanoma TRP2 CTL Epitope Vaccine SCIB1, Melapuldencel-T, MELK Inhibitor OTS167, Melphalan, Melphalan Flufenamide, Melphalan Hydrochloride, Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex, Membrane-Disrupting Peptide EP-100, Menatetrenone, Menin-MLL Interaction Inhibitor SNDX-5613, Menogaril, Merbarone, Mercaptopurine, Mercaptopurine Anhydrous, Mercaptopurine Oral Suspension, Merestinib, Mesna, Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536, MET Kinase Inhibitor OMO-1, MET Tyrosine Kinase Inhibitor BMS-777607, MET Tyrosine Kinase Inhibitor EMD 1204831, MET Tyrosine Kinase Inhibitor PF-04217903, MET Tyrosine Kinase Inhibitor SAR125844, MET Tyrosine Kinase Inhibitor SGX523, MET x MET Bispecific Antibody REGN5093, Metamelfalan, MetAP2 Inhibitor APL-1202, MetAP2 Inhibitor SDX-7320, Metarrestin, Metatinib Tromethamine, Metformin, Metformin Hydrochloride, Methanol Extraction Residue of BCG, Methazolamide, Methionine Aminopeptidase 2 Inhibitor M8891, Methionine Aminopeptidase 2 Inhibitor PPI-2458, Methotrexate, Methotrexate Sodium, Methotrexate-E Therapeutic Implant, Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles, Methoxsalen, Methoxyamine, Methoxyamine Hydrochloride, Methyl-5-Aminolevulinate Hydrochloride Cream, Methylcantharidimide, Methylmercaptopurine Riboside, Methylprednisolone, Methylprednisolone Acetate, Methylprednisolone Sodium Succinate, Methylselenocysteine, Methyltestosterone, Metoprine, Mevociclib, Mezagitamab, Mibefradil, Mibefradil Dihydrochloride, Micellar Nanoparticle-encapsulated Epirubicin, Micro Needle Array-Doxorubicin, Microbiome GEN-001, Microbiome-derived Peptide Vaccine EO2401, Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300, Microtubule Inhibitor SCB01A, Midostaurin, Mifamurtide, Mifepristone, Milademetan Tosylate, Milataxel, Milatuzumab, Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110, Milciclib Maleate, Milk Thistle, Miltefosine, Minretumomab, Mipsagargin, Miptenalimab, Mirabegron, Miransertib, Mirdametinib, Mirvetuximab Soravtansine, Mirzotamab Clezutoclax, Misonidazole, Mistletoe Extract, Mitazalimab, Mitindomide, Mitobronitol, Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101, Mitoclomine, Mitoflaxone, Mitoguazone, Mitoguazone Dihydrochloride, Mitolactol, Mitomycin, Mitomycin A, Mitomycin B, Mitomycin C Analog KW-2149, Mitosis Inhibitor T 1101 Tosylate, Mitotane, Mitotenamine, Mitoxantrone, Mitoxantrone Hydrochloride, Mitozolomide, Mivavotinib, Mivebresib, Mivobulin, Mivobulin Isethionate, Mixed Bacteria Vaccine, MK0731, MKC-1, MKNK1 Inhibitor BAY 1143269, MMP Inhibitor S-3304, MNK1/2 Inhibitor ETC-1907206, Mobocertinib, Mocetinostat, Modakafusp Alfa, Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208, Modified Vitamin D Binding Protein Macrophage Activator EF-022, Modotuximab, MOF Compound RiMO-301, Mofarotene, Mogamulizumab, Molibresib, Molibresib Besylate, Momelotinib, Monalizumab, Monocarboxylate Transporter 1 Inhibitor AZD3965, Monoclonal Antibody 105AD7 Anti-idiotype Vaccine, Monoclonal Antibody 11D10, Monoclonal Antibody 11D10 Anti-Idiotype Vaccine, Monoclonal Antibody 14G2A, Monoclonal Antibody 1F5, Monoclonal Antibody 3622W94, Monoclonal Antibody 3F8, Monoclonal Antibody 3H1 Anti-Idiotype Vaccine, Monoclonal Antibody 4B5 Anti-Idiotype Vaccine, Monoclonal Antibody 7C11, Monoclonal Antibody 81C6, Monoclonal Antibody A1G4 Anti-Idiotype Vaccine, Monoclonal Antibody A27.15, Monoclonal Antibody A33, Monoclonal Antibody AbGn-7, Monoclonal Antibody AK002, Monoclonal Antibody ASP1948, Monoclonal Antibody CAL, Monoclonal Antibody CC49-delta CH2, Monoclonal Antibody CEP-37250/KHK2804, Monoclonal Antibody D6.12, Monoclonal Antibody E2.3, Monoclonal Antibody F19, Monoclonal Antibody GD2 Anti-Idiotype Vaccine, Monoclonal Antibody HeFi-1, Monoclonal Antibody Hu3S193, Monoclonal Antibody HuAFP31, Monoclonal Antibody HuHMFG1, Monoclonal Antibody huJ591, Monoclonal Antibody HuPAM4, Monoclonal Antibody IMMU-14, Monoclonal Antibody L6, Monoclonal Antibody Lym-1, Monoclonal Antibody m170, Monoclonal Antibody Me1-14 F(ab')2, Monoclonal Antibody muJ591, Monoclonal Antibody MX35 F(ab')2, Monoclonal Antibody NEO-201, Monoclonal Antibody R24, Monoclonal Antibody RAV12, Monoclonal Antibody SGN-14, Monoclonal Antibody TRK-950, Monoclonal Microbial EDP1503, Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100, Monomethyl Auristatin E, Morinda Citrifolia Fruit Extract, Morpholinodoxorubicin, Mosedipimod, Mosunetuzumab, Motesanib, Motesanib Diphosphate, Motexafin Gadolinium, Motexafin Lutetium, Motixafortide, Motolimod, MOv-gamma Chimeric Receptor Gene, Moxetumomab Pasudotox, Mps1 Inhibitor BAY 1217389, Mps1 Inhibitor BOS172722, mRNA-based Personalized Cancer Vaccine mRNA-4157, mRNA-based Personalized Cancer Vaccine NCI-4650, mRNA-based TriMix Melanoma Vaccine ECI-006, mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902, mRNA-derived KRAS-targeted Vaccine V941, mRNA-derived Lung Cancer Vaccine BI 1361849, mRNA-Derived Prostate Cancer Vaccine CV9103, mRNA-derived Prostate Cancer Vaccine CV9104, MTF-1 Inhibitor APTO-253 HCl, mTOR Inhibitor GDC-0349, mTOR Kinase Inhibitor AZD8055, mTOR Kinase Inhibitor CC-223, mTOR Kinase Inhibitor OSI-027, mTOR Kinase Inhibitor PP242, mTOR1/2 Kinase Inhibitor ME-344, mTORC 1/2 Inhibitor LXI-15029, mTORC1/2 Kinase Inhibitor BI 860585, mTORC1/mTORC2/DHFR Inhibitor ABTL0812, MUC-1/WT1 Peptide-primed Autologous Dendritic Cells, MUC1-targeted Peptide GO-203-2C, Mucoadhesive Paclitaxel Formulation, Multi-AGC Kinase Inhibitor AT13148, Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200, Multi-epitope HER2 Peptide Vaccine H2NVAC, Multi-epitope HER2 Peptide Vaccine TPIV100, Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107, Multi-kinase Inhibitor TPX-0022, Multi-kinase Inhibitor XL092, Multi-mode Kinase Inhibitor EOC317, Multi-neo-epitope Vaccine OSE 2101, Multifunctional/Multitargeted Anticancer Agent OMN54, Multikinase Inhibitor 4SC-203, Multikinase Inhibitor AEE788, Multikinase Inhibitor AT9283, Multikinase Inhibitor SAR103168, Multipeptide Vaccine S-588210, Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327, Muparfostat, Mureletecan, Murizatoclax, Muscadine Grape Extract, Mutant IDH1 Inhibitor DS-1001, Mutant p53 Activator COTI-2, Mutant-selective EGFR Inhibitor PF-06459988, MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP, MVA-BN Smallpox Vaccine, MVA-FCU1 TG4023, MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1, MYC-targeting siRNA DCR-MYC, Mycobacterium tuberculosis Arabinomannan Z-100, Mycobacterium w, Mycophenolic Acid, N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea, N-dihydrogalactochitosan, N-Methylformamide, N;N-Dibenzyl Daunomycin, NA17-A Antigen, NA17.A2 Peptide Vaccine, Nab-paclitaxel, Nab-paclitaxel/Rituximab-coated Nanoparticle AR160, Nadofaragene Firadenovec, Nagrestipen, Namirotene, Namodenoson, NAMPT Inhibitor OT-82, Nanafrocin, Nanatinostat, Nanocell-encapsulated miR-16-based microRNA Mimic, Nanoparticle Albumin-Bound Docetaxel, Nanoparticle Albumin-Bound Rapamycin, Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404, Nanoparticle Paclitaxel Ointment SOR007, Nanoparticle-based Paclitaxel Suspension, Nanoparticle-encapsulated Doxorubicin Hydrochloride, Nanoscale Coordination Polymer Nanoparticles CPI-100, Nanosomal Docetaxel Lipid Suspension, Napabucasin, Naphthalimide Analogue UNBS5162, Naptumomab Estafenatox, Naquotinib, Naratuximab Emtansine, Narnatumab, Natalizumab, Natural IFN-alpha OPC-18, Natural Killer Cells ZRx101, Navarixin, Navicixizumab, Navitoclax, Navoximod, Navy Bean Powder, Naxitamab, Nazartinib, ncmtRNA Oligonucleotide Andes-1537, Necitumumab, Nedaplatin, NEDD8 Activating Enzyme E1 Inhibitor TAS4464, Nedisertib, Nelarabine, Nelipepimut-S, Nelipepimut-S Plus GM-CSF Vaccine, Nemorubicin, Nemorubicin Hydrochloride, Neoantigen Vaccine GEN-009, Neoantigen-based Glioblastoma Vaccine, Neoantigen-based Melanoma-Poly-ICLC Vaccine, Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine, Neoantigen-based Therapeutic Cancer Vaccine GRT-C903, Neoantigen-based Therapeutic Cancer Vaccine GRT-R904, Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017, Neratinib, Neratinib Maleate, Nesvacumab, NG-nitro-L-arginine, Niacinamide, Niclosamide, Nicotinamide Riboside, Nidanilimab, Nifurtimox, Nilotinib, Nilotinib Hydrochloride Anhydrous, Nilotinib Hydrochloride Monohydrate, Nilutamide, Nimesulide-Hyaluronic Acid Conjugate CA102N, Nimodipine, Nimotuzumab, Nimustine, Nimustine Hydrochloride, Ningetinib Tosylate, Nintedanib, Niraparib, Niraparib Tosylate Monohydrate, Nirogacestat, Nitric Oxide-Releasing Acetylsalicylic Acid Derivative, Nitrogen Mustard Prodrug PR-104, Nitroglycerin Transdermal Patch, Nivolumab, NLRP3 Agonist BMS-986299, Nocodazole, Nogalamycin, Nogapendekin Alfa, Nolatrexed Dihydrochloride, Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201, Norgestrel, North American Ginseng Extract AFX-2, Nortopixantrone, Noscapine, Noscapine Hydrochloride, Not Otherwise Specified, Notch Signaling Inhibitor PF-06650808, Notch Signaling Pathway Inhibitor MK0752, NTRK/ROS1 Inhibitor DS-6051b, Nucleolin Antagonist IPP-204106N, Nucleoside Analog DFP-10917, Nucleotide Analog Prodrug NUC-3373, Nucleotide Analogue GS 9219, Numidargistat, Nurulimab, Nutlin-3a, Nutraceutical TBL-12, NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611, NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301, NY-ESO-1/GLA-SE Vaccine ID-G305, NY-ESO-B, O-Chloroacetylcarbamoylfumagillol, O6-Benzylguanine, Obatoclax Mesylate, Obinutuzumab, Oblimersen Sodium, Ocaratuzumab, Ocrelizumab, Octreotide, Octreotide Acetate, Octreotide Pamoate, Odronextamab, Ofatumumab, Ofranergene Obadenovec, Oglufanide Disodium, Olaparib, Olaptesed Pegol, Olaratumab, Oleandrin, Oleclumab, Oligo-fucoidan, Oligonucleotide SPC2996, Olinvacimab, Olivomycin, Olmutinib, Oltipraz, Olutasidenib, Olvimulogene Nanivacirepvec, Omacetaxine Mepesuccinate, Ombrabulin, Omipalisib, Onalespib, Onalespib Lactate, Onartuzumab, Onatasertib, Oncolytic Adenovirus Ad5-DNX-2401, Oncolytic Adenovirus ORCA-010, Oncolytic Herpes Simplex Virus-1 ONCR-177, Oncolytic HSV-1 C134, Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011, Oncolytic HSV-1 G207, Oncolytic HSV-1 NV1020, Oncolytic HSV-1 rQNestin34.5v.2, Oncolytic HSV-1 rRp450, Oncolytic HSV1716, Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein, Oncolytic Newcastle Disease Virus MEDI5395, Oncolytic Newcastle Disease Virus MTH-68H, Oncolytic Newcastle Disease Virus Strain PV701, Oncolytic Virus ASP9801, Oncolytic Virus RP1, Ondansetron Hydrochloride, Ontorpacept, Ontuxizumab, Onvansertib, Onvatilimab, Opaganib, OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule, Opioid Growth Factor, Opolimogene Capmilisbac, Oportuzumab Monatox, Oprozomib, Opucolimab, Oral Aminolevulinic Acid Hydrochloride, Oral Azacitidine, Oral Cancer Vaccine V3-OVA, Oral Docetaxel, Oral Fludarabine Phosphate, Oral Hsp90 Inhibitor IPI-493, Oral Ixabepilone, Oral Microencapsulated Diindolylmethane, Oral Milataxel, Oral Myoma Vaccine V3-myoma, Oral Pancreatic Cancer Vaccine V3-P, Oral Picoplatin, Oral Sodium Phenylbutyrate, Oral Topotecan Hydrochloride, Orantinib, Oraxol, Oregovomab, Orelabrutinib, Ormaplatin, Ortataxel, Orteronel, Orvacabtagene Autoleucel, Osilodrostat, Osimertinib, Other, Otlertuzumab, Ovapuldencel-T, Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006, Ovine Submaxillary Mucin, OX40L-expressing Oncolytic Adenovirus DNX-2440, Oxaliplatin, Oxaliplatin Eluting Beads, Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome, Oxcarbazepine, Oxeclosporin, Oxidative Phosphorylation Inhibitor IACS-010759, Oxidative Phosphorylation Inhibitor IM156, Oxidopamine, OxPhos Inhibitor VLX600, Ozarelix, P-cadherin Antagonist PF-03732010, P-cadherin Inhibitor PCA062, P-cadherin-targeting Agent PF-06671008, P-p68 Inhibitor RX-5902, P-TEFb Inhibitor BAY1143572, p300/CBP Bromodomain Inhibitor CCS1477, p38 MAPK Inhibitor LY3007113, p53 Peptide Vaccine MPS-128, p53-HDM2 Interaction Inhibitor MI-773, p53-HDM2 Protein-protein Interaction Inhibitor APG-115, p53/HDM2 Interaction Inhibitor CGM097, p70S6K Inhibitor LY2584702, p70S6K/Akt Inhibitor MSC2363318A, p97 Inhibitor CB-5083, p97 Inhibitor CB-5339, p97 Inhibitor CB-5339 Tosylate, Paclitaxel, Paclitaxel Ceribate, Paclitaxel Injection Concentrate for Nanodispersion, Paclitaxel Liposome, Paclitaxel Poliglumex, Paclitaxel Polymeric Micelle Formulation NANT-008, Paclitaxel PPE Microspheres, Paclitaxel Trevatide, Paclitaxel Vitamin E-Based Emulsion, Paclitaxel-Loaded Polymeric Micelle, Pacmilimab, Pacritinib, Padeliporfin, Padoporfin, PAK4 Inhibitor PF-03758309, PAK4/NAMPT Inhibitor KPT-9274, Palbociclib, Palbociclib Isethionate, Palifosfamide, Palifosfamide Tromethamine, Palladium Pd-103, Palonosetron Hydrochloride, Pamidronate Disodium, Pamidronic Acid, Pamiparib, Pamrevlumab, pan FGFR Inhibitor PRN1371, Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514, Pan-AKT Inhibitor ARQ751, Pan-AKT Kinase Inhibitor GSK690693, Pan-FGFR Inhibitor LY2874455, Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806, pan-HER Kinase Inhibitor AC480, Pan-IDH Mutant Inhibitor AG-881, Pan-KRAS Inhibitor BI 1701963, Pan-Mutant-IDH1 Inhibitor Bay-1436032, Pan-mutation-selective EGFR Inhibitor CLN-081, pan-PI3K Inhibitor CLR457, pan-PI3K/mTOR Inhibitor SF1126, Pan-PIM Inhibitor INCB053914, pan-PIM Kinase Inhibitor AZD1208, pan-PIM Kinase Inhibitor NVP-LGB-321, pan-RAF Inhibitor LXH254, Pan-RAF Inhibitor LY3009120, pan-RAF Kinase Inhibitor CCT3833, pan-RAF Kinase Inhibitor TAK-580, Pan-RAR Agonist/AP-1 Inhibitor LGD 1550, Pan-TRK Inhibitor NOV1601, Pan-TRK Inhibitor ONO-7579, Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981, Pancratistatin, Panitumumab, Panobinostat, Panobinostat Nanoparticle Formulation MTX110, Panulisib, Paricalcitol, PARP 1/2 Inhibitor IMP4297, PARP 1/2 Inhibitor NOV1401, PARP Inhibitor AZD2461, PARP Inhibitor CEP-9722, PARP Inhibitor E7016, PARP Inhibitor NMS-03305293, PARP-1/2 Inhibitor ABT-767, PARP/Tankyrase Inhibitor 2X-121, PARP7 Inhibitor RBN-2397, Parsaclisib, Parsaclisib Hydrochloride, Parsatuzumab, Partially Engineered T-regulatory Cell Donor Graft TRGFT-201, Parvovirus H-1, Pasireotide, Pasotuxizumab, Patidegib, Patidegib Topical Gel, Patritumab, Patritumab Deruxtecan, Patupilone, Paxalisib, Pazopanib, Pazopanib Hydrochloride, pbi-shRNA STMN1 Lipoplex, PBN Derivative OKN-007, PCNU, PD-1 Directed Probody CX-188, PD-1 Inhibitor, PD-L1 Inhibitor GS-4224, PD-L1 Inhibitor INCB086550, PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480, PD-L1/PD-L2/VISTA Antagonist CA-170, PDK1 Inhibitor AR-12, pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0, PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1, PEG-interleukin-2, PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1, PEG-Proline-Interferon Alfa-2b, Pegargiminase, Pegaspargase, Pegdinetanib, Pegfilgrastim, Pegilodecakin, Peginterferon Alfa-2a, Peginterferon Alfa-2b, Pegvisomant, Pegvorhyaluronidase Alfa, Pegylated Deoxycytidine Analogue DFP-14927, Pegylated Interferon Alfa, Pegylated Liposomal Belotecan, Pegylated Liposomal Doxorubicin Hydrochloride, Pegylated Liposomal Irinotecan, Pegylated Liposomal Mitomycin C Lipid-based Prodrug, Pegylated Liposomal Mitoxantrone Hydrochloride, Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010, Pegylated Paclitaxel, Pegylated Recombinant Human Arginase I BCT-100, Pegylated Recombinant Human Hyaluronidase PH20, Pegylated Recombinant Interleukin-2 THOR-707, Pegylated Recombinant L-asparaginase Erwinia chrysanthemi, Pegylated SN-38 Conjugate PLX038, Pegzilarginase, Pelabresib, Pelareorep, Peldesine, Pelitinib, Pelitrexol, Pembrolizumab, Pemetrexed, Pemetrexed Disodium, Pemigatinib, Pemlimogene Merolisbac, Penberol, Penclomedine, Penicillamine, Pentamethylmelamine, Pentamustine, Pentostatin, Pentoxifylline, PEOX-based Polymer Encapsulated Paclitaxel FID-007, PEP-3-KLH Conjugate Vaccine, Pepinemab, Peplomycin, Peplomycin Sulfate, Peposertib, Peptichemio, Peptide 946 Melanoma Vaccine, Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine, Peretinoin, Perflenapent Emulsion, Perfosfamide, Perifosine, Perillyl Alcohol, Personalized ALL-specific Multi-HLA-binding Peptide Vaccine, Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC, Personalized Cancer Vaccine RO7198457, Personalized Neoantigen DNA Vaccine GNOS-PV01, Personalized Neoantigen DNA Vaccine GNOS-PVO2, Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01, Personalized Neoepitope Yeast Vaccine YE-NEO-001, Personalized Peptide Cancer Vaccine NEO-PV-01, Pertuzumab, Pevonedistat, Pexastimogene Devacirepvec, Pexidartinib, Pexmetinib, PGG Beta-Glucan, PGLA/PEG Copolymer-Based Paclitaxel, PH20 Hyaluronidase-expressing Adenovirus VCN-01, Phaleria macrocarpa Extract DLBS-1425, Pharmacological Ascorbate, Phellodendron amurense Bark Extract, Phenesterin, Phenethyl Isothiocyanate, Phenethyl Isothiocyanate-containing Watercress Juice, Phenyl Acetate, Phenytoin Sodium, Phosphaplatin PT-112, Phosphatidylcholine-Bound Silybin, Phospholipid Ether-drug Conjugate CLR 131, Phosphoramide Mustard, Phosphorodiamidate Morpholino Oligomer AVI-4126, Phosphorus P-32, Photodynamic Compound TLD-1433, Photosensitizer LUZ 11, Phytochlorin Sodium-Polyvinylpyrrolidone Complex, PI3K Alpha/Beta Inhibitor BAY1082439, PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate, PI3K Inhibitor ACP-319, PI3K Inhibitor BGT226, PI3K Inhibitor GDC-0084, PI3K Inhibitor GDC0077, PI3K Inhibitor GSK1059615, PI3K Inhibitor WX-037, PI3K Inhibitor ZSTK474, PI3K p110beta/delta Inhibitor KA2237, PI3K-alpha Inhibitor MEN1611, PI3K-beta Inhibitor GSK2636771, PI3K-beta Inhibitor SAR260301, PI3K-delta Inhibitor AMG 319, PI3K-delta Inhibitor HMPL 689, PI3K-delta Inhibitor INCB050465, PI3K-delta Inhibitor PWT143, PI3K-delta Inhibitor SHC014748M, PI3K-delta Inhibitor YY-20394, PI3K-gamma Inhibitor IPI-549, PI3K/BET Inhibitor LY294002, PI3K/mTOR Kinase Inhibitor DS-7423, PI3K/mTOR Kinase Inhibitor PF-04691502, PI3K/mTOR Kinase Inhibitor VS-5584, PI3K/mTOR Kinase Inhibitor WXFL10030390, PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170, PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901, PI3Ka/mTOR Inhibitor PKI-179, PI3Kalpha Inhibitor AZD8835, PI3Kbeta Inhibitor AZD8186, PI3Kdelta Inhibitor GS-9901, Pibenzimol, Pibrozelesin, Pibrozelesin Hydrobromide, Picibanil, Picoplatin, Picrasinoside H, Picropodophyllin, Pictilisib, Pictilisib Bismesylate, Pidilizumab, Pilaralisib, PIM Kinase Inhibitor LGH447, PIM Kinase Inhibitor SGI-1776, PIM Kinase Inhibitor TP-3654, PIM/FLT3 Kinase Inhibitor SEL24, Pimasertib, Pimitespib, Pimurutamab, Pinatuzumab Vedotin, Pingyangmycin, Pinometostat, Pioglitazone, Pioglitazone Hydrochloride, Pipendoxifene, Piperazinedione, Piperine Extract (Standardized), Pipobroman, Piposulfan, Pirarubicin, Pirarubicin Hydrochloride, Pirfenidone, Piritrexim, Piritrexim Isethionate, Pirotinib, Piroxantrone, Piroxantrone Hydrochloride, Pixantrone, Pixantrone Dimaleate, Pixatimod, PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231, PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521, PKC-beta Inhibitor MS-553, Placebo, Pladienolide Derivative E7107, Plamotamab, Plasmid DNA Vaccine pING-hHER3FL, Platinum, Platinum Acetylacetonate-Titanium Dioxide Nanoparticles, Platinum Compound, Plevitrexed, Plicamycin, Plinabulin, Plitidepsin, Plk1 Inhibitor BI 2536, PLK1 Inhibitor CYC140, PLK1 Inhibitor TAK-960, Plocabulin, Plozalizumab, pNGVL4a-CRT-E6E7L2 DNA Vaccine, pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2, Pol I Inhibitor CX5461, Polatuzumab Vedotin, Polidocanol, Poliglusam, Polo-like Kinase 1 Inhibitor GSK461364, Polo-like Kinase 1 Inhibitor MK1496, Polo-like Kinase 1 Inhibitor NMS-1286937, Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate, Poly-alendronate Dextran-Guanidine Conjugate, Poly-gamma Glutamic Acid, Polyamine Analog SL11093, Polyamine Analogue PG11047, Polyamine Analogue SBP-101, Polyamine Transport Inhibitor AMXT-1501 Dicaprate, Polyandrol, Polyethylene Glycol Recombinant Endostatin, Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318, Polymer-conjugated IL-15 Receptor Agonist NKTR-255, Polymer-encapsulated Luteolin Nanoparticle, Polymeric Camptothecin Prodrug XMT-1001, Polypodium leucotomos Extract, Polysaccharide-K, Polysialic Acid, Polyunsaturated Fatty Acid, Polyvalent Melanoma Vaccine, Pomalidomide, Pomegranate Juice, Pomegranate Liquid Extract, Ponatinib, Ponatinib Hydrochloride, Porcupine Inhibitor CGX1321, Porcupine Inhibitor ETC-1922159, Porcupine Inhibitor RXC004, Porcupine Inhibitor WNT974, Porcupine Inhibitor XNW7201, Porfimer Sodium, Porfiromycin, Poziotinib, PPAR Alpha Antagonist TPST-1120, PR1 Leukemia Peptide Vaccine, Pracinostat, Pralatrexate, Pralsetinib, Praluzatamab Ravtansine, PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701, Pravastatin Sodium, Prednimustine, Prednisolone, Prednisolone Acetate, Prednisolone Sodium Phosphate, Prednisone, Prexasertib, Prexigebersen, PRIMA-1 Analog APR-246, Prime Cancer Vaccine MVA-BN-CV301, Prinomastat, PRMT1 Inhibitor GSK3368715, PRMT5 Inhibitor JNJ-64619178, PRMT5 Inhibitor PRT811, Proapoptotic Sulindac Analog CP-461, Procarbazine, Procarbazine Hydrochloride, Procaspase Activating Compound-1 VO-100, Progestational IUD, Prohibitin-Targeting Peptide 1, Prolgolimab, Prostaglandin E2 EP4 Receptor Inhibitor AN0025, Prostaglandin E2 EP4 Receptor Inhibitor E7046, Prostate Cancer Vaccine ONY-P1, Prostate Health Cocktail Dietary Supplement, Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024, Protease-activated Anti-PD-L1 Antibody Prodrug CX-072, Protein Arginine Methyltransferase 5 Inhibitor GSK3326595, Protein Arginine Methyltransferase 5 Inhibitor PF-06939999, Protein Arginine Methyltransferase 5 Inhibitor PRT543, Protein Kinase C Inhibitor IDE196, Protein Phosphatase 2A Inhibitor LB-100, Protein Stabilized Liposomal Docetaxel Nanoparticles, Protein Tyrosine Kinase 2 Inhibitor IN10018, Proxalutamide, PSA/IL-2/GM-CSF Vaccine, PSA/PSMA DNA Plasmid INO-5150, Pseudoisocytidine, PSMA-targeted Docetaxel Nanoparticles BIND-014, PSMA-targeted Tubulysin B-containing Conjugate EC1169, PSMA/CD3 Tri-specific T-cell Activating Construct HPN424, PTEF-b/CDK9 Inhibitor BAY1251152, Pterostilbene, Pumitepa, Puquitinib, Puquitinib Mesylate, Puromycin, Puromycin Hydrochloride, PV-10, PVA Microporous Hydrospheres/Doxorubicin Hydrochloride, Pyrazinamide, Pyrazoloacridine, Pyridyl Cyanoguanidine CHS 828, Pyrotinib, Pyrotinib Dimaleate, Pyroxamide, Pyruvate Kinase Inhibitor TLN-232, Pyruvate Kinase M2 Isoform Activator TP-1454, Qilisheng Immunoregulatory Oral Solution, Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine, Quarfloxin, Quinacrine Hydrochloride, Quinine, Quisinostat, Quizartinib, R-(-)-Gossypol Acetic Acid, Rabusertib, Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88, Racotumomab, RAD51 Inhibitor CYT-0851, Radgocitabine, Radgocitabine Hydrochloride, Radioactive Iodine, Radiolabeled CC49, Radium Ra 223 Dichloride, Radium Ra 224-labeled Calcium Carbonate Microparticles, Radix Angelicae Sinensis/Radix Astragali Herbal Supplement, Radotinib Hydrochloride, Raf Kinase Inhibitor HM95573, RAF Kinase Inhibitor L-779450, RAF Kinase Inhibitor XL281, Ragifilimab, Ralaniten Acetate, Ralimetinib Mesylate, Raloxifene, Raloxifene Hydrochloride, Raltitrexed, Ramucirumab, Ranibizumab, Ranimustine, Ranolazine, Ranpirnase, RARalpha Agonist IRX5183, Ras Inhibitor, Ras Peptide ASP, Ras Peptide CYS, Ras Peptide VAL, Razoxane, Realgar-Indigo naturalis Formulation, Rebastinib Tosylate, Rebeccamycin, Rebimastat, Receptor Tyrosine Kinase Inhibitor R1530, Recombinant Adenovirus-p53 SCH-58500, Recombinant Anti-WT1 Immunotherapeutic GSK2302024A, Recombinant Bacterial Minicells VAX014, Recombinant Bispecific Single-Chain Antibody rM28, Recombinant CD40-Ligand, Recombinant Erwinia asparaginase JZP-458, Recombinant Erythropoietin, Recombinant Fas Ligand, Recombinant Fractalkine, Recombinant Granulocyte-Macrophage Colony-Stimulating Factor, Recombinant Human 6Ckine, Recombinant Human Adenovirus Type 5 H101, Recombinant Human Angiotensin Converting Enzyme 2 APN01, Recombinant Human Apolipoprotein(a) Kringle V MG1102, Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine, Recombinant Human Endostatin, Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine, Recombinant Human Papillomavirus 11-valent Vaccine, Recombinant Human Papillomavirus Bivalent Vaccine, Recombinant Human Papillomavirus Nonavalent Vaccine, Recombinant Human Plasminogen Kringle 5 Domain ABT 828, Recombinant Human TRAIL-Trimer Fusion Protein SCB-313, Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301, Recombinant Interferon, Recombinant Interferon Alfa, Recombinant Interferon Alfa-1b, Recombinant Interferon Alfa-2a, Recombinant Interferon Alfa-2b, Recombinant Interferon Alpha 2b-like Protein, Recombinant Interferon Beta, Recombinant Interferon Gamma, Recombinant Interleukin-12, Recombinant Interleukin-13, Recombinant Interleukin-18, Recombinant Interleukin-2, Recombinant Interleukin-6, Recombinant KSA Glycoprotein CO17-1A, Recombinant Leukocyte Interleukin, Recombinant Leukoregulin, Recombinant Luteinizing Hormone, Recombinant Macrophage Colony-Stimulating Factor, Recombinant MAGE-3.1 Antigen, Recombinant MIP1-alpha Variant ECI301, Recombinant Modified Vaccinia Ankara-5T4 Vaccine, Recombinant Oncolytic Poliovirus PVS-RIPO, Recombinant Platelet Factor 4, Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A, Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207, Recombinant Super-compound Interferon, Recombinant Thyroglobulin, Recombinant Thyrotropin Alfa, Recombinant Transforming Growth Factor-Beta, Recombinant Transforming Growth Factor-Beta-2, Recombinant Tumor Necrosis Factor-Alpha, Recombinant Tyrosinase-Related Protein-2, Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter, Redaporfin, Refametinib, Regorafenib, Relacorilant, Relatlimab, Relugolix, Remetinostat, Renal Cell Carcinoma Peptides Vaccine IMA901, Reparixin, Repotrectinib, Resiquimod, Resiquimod Topical Gel, Resistant Starch, Resminostat, Resveratrol, Resveratrol Formulation SRT501, RET Inhibitor DS-5010, RET Mutation/Fusion Inhibitor BLU-667, RET/SRC Inhibitor TPX-0046, Retaspimycin, Retaspimycin Hydrochloride, Retelliptine, Retifanlimab, Retinoic Acid Agent Ro 16-9100, Retinoid 9cUAB30, Retinol, Retinyl Acetate, Retinyl Palmitate, Retrovector Encoding Mutant Anti-Cyclin G1, Revdofilimab, Rexinoid NRX 194204, Rezivertinib, RFT5-dgA Immunotoxin IMTOX25, Rhenium Re 188 BMEDA-labeled Liposomes, Rhenium Re-186 Hydroxyethylidene Diphosphonate, Rhenium Re-188 Ethiodized Oil, Rhenium Re-188 Etidronate, Rhizoxin, RhoC Peptide Vaccine RV001V, Ribociclib, Ribociclib/Letrozole, Ribonuclease QBI-139, Ribosome-Inactivating Protein CY503, Ribozyme RPI.4610, Rice Bran, Ricolinostat, Ridaforolimus, Rigosertib, Rigosertib Sodium, Rilimogene Galvacirepvec, Rilimogene Galvacirepvec/Rilimogene Glafolivec, Rilimogene Glafolivec, Rilotumumab, Rindopepimut, Ripertamab, RIPK1 Inhibitor GSK3145095, Ripretinib, Risperidone Formulation in Rumenic Acid, Ritrosulfan, Rituximab, Rituximab and Hyaluronidase Human, Rituximab Conjugate CON-4619, Riviciclib, Rivoceranib, Rivoceranib Mesylate, RNR Inhibitor COH29, Robatumumab, Roblitinib, ROBO1-targeted BiCAR-NKT Cells, Rocakinogene Sifuplasmid, Rocapuldencel-T, Rociletinib, Rodorubicin, Roducitabine, Rofecoxib, Roflumilast, Rogaratinib, Rogletimide, Rolinsatamab Talirine, Romidepsin, Roneparstat, Roniciclib, Ropeginterferon Alfa-2B, Ropidoxuridine, Ropocamptide, Roquinimex, RORgamma Agonist LYC-55716, Rosabulin, Rose Bengal Solution PV-10, Rosiglitazone Maleate, Rosmantuzumab, Rosopatamab, Rosuvastatin, Rovalpituzumab Tesirine, RSK1-4 Inhibitor PMD-026, Rubitecan, Rucaparib, Rucaparib Camsylate, Rucaparib Phosphate, Ruthenium Ru-106, Ruthenium-based Small Molecule Therapeutic BOLD-100, Ruthenium-based Transferrin Targeting Agent NKP-1339, Ruxolitinib, Ruxolitinib Phosphate, Ruxotemitide, S-Adenosylmethionine, S-equol, S1P Receptor Agonist KRP203, Sabarubicin, Sabatolimab, Sacituzumab Govitecan, Sacubitril/Valsartan, Safingol, Sagopilone, Salirasib, Salmonella VNP20009, Sam68 Modulator CWP232291, Samalizumab, Samarium Sm 153-DOTMP, Samotolisib, Samrotamab Vedotin, Samuraciclib, Sapacitabine, Sapanisertib, Sapitinib, Saracatinib, Saracatinib Difumarate, SarCNU, Sardomozide, Sargramostim, Sasanlimab, Satraplatin, Savolitinib, SBIL-2, Scopoletin, SDF-1 Receptor Antagonist PTX-9908, Seclidemstat, Sedoxantrone Trihydrochloride, Selatinib Ditosilate, Selective Androgen Receptor Modulator RAD140, Selective Cytokine Inhibitory Drug CC-1088, Selective Estrogen Receptor Degrader AZD9496, Selective Estrogen Receptor Degrader AZD9833, Selective Estrogen Receptor Degrader LSZ102, Selective Estrogen Receptor Degrader LX-039, Selective Estrogen Receptor Degrader LY3484356, Selective Estrogen Receptor Degrader SRN-927, Selective Estrogen Receptor Modulator CC-8490, Selective Estrogen Receptor Modulator TAS-108, Selective Glucocorticoid Receptor Antagonist CORT125281, Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352, Seliciclib, Selicrelumab, Selinexor, Selitrectinib, Selonsertib, Selpercatinib, Selumetinib, Selumetinib Sulfate, Semaxanib, Semuloparin, Semustine, Seneca Valley Virus-001, Seocalcitol, Sepantronium Bromide, Serabelisib, Serclutamab Talirine, SERD D-0502, SERD G1T48, SERD GDC-9545, SERD SAR439859, SERD SHR9549, SERD ZN-c5, Serdemetan, Sergiolide, Seribantumab, Serine/Threonine Kinase Inhibitor CBP501, Serine/Threonine Kinase Inhibitor XL418, Serplulimab, Sevacizumab, Seviteronel, Shared Anti-Idiotype-AB-S006, Shared Anti-Idiotype-AB-S024A, Shark Cartilage, Shark Cartilage Extract AE-941, Shenqi Fuzheng Injection SQ001, Sho-Saiko-To, Short Chain Fatty Acid HQK-1004, SHP-1 Agonist SC-43, SHP2 Inhibitor JAB-3068, SHP2 Inhibitor RLY-1971, SHP2 Inhibitor RMC-4630, SHP2 Inhibitor TNO155, Shu Yu Wan Formula, Sialyl Tn Antigen, Sialyl Tn-KLH Vaccine, Sibrotuzumab, siG12D LODER, Silatecan AR-67, Silibinin, Silicon Phthalocyanine 4, Silmitasertib Sodium, Siltuximab, Simalikalactone D, Simeprevir, Simlukafusp Alfa, Simmitinib, Simotaxel, Simtuzumab, Simurosertib, Sintilimab, Siplizumab, Sipuleucel-T, Siremadlin, siRNA-transfected Peripheral Blood Mononuclear Cells APN401, Sirolimus, SIRPa-4-1BBL Fusion Protein DSP107, SIRPa-Fc Fusion Protein TTI-621, SIRPa-Fc-CD40L Fusion Protein SL-172154, SIRPa-IgG4-Fc Fusion Protein TTI-622, Sitimagene Ceradenovec, Sitravatinib, Sivifene, Sizofiran, SLC6A8 Inhibitor RGX-202, SLCT Inhibitor GNS561, SMAC Mimetic BI 891065, Smac Mimetic GDC-0152, Smac Mimetic GDC-0917, Smac Mimetic LCL161, SMO Protein Inhibitor ZSP1602, Smoothened Antagonist BMS-833923, Smoothened Antagonist LDE225 Topical, Smoothened Antagonist LEQ506, Smoothened Antagonist TAK-441, SN-38-Loaded Polymeric Micelles NK012, SNS01-T Nanoparticles, Sobuzoxane, Sodium Borocaptate, Sodium Butyrate, Sodium Dichloroacetate, Sodium Iodide I-131, Sodium Metaarsenite, Sodium Phenylbutyrate, Sodium Salicylate, Sodium Selenite, Sodium Stibogluconate, Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108, Sofituzumab Vedotin, Solitomab, Sonepcizumab, Sonidegib, Sonolisib, Sorafenib, Sorafenib Tosylate, Sorghum bicolor Supplement, Sotigalimab, Sotorasib, Sotrastaurin, Sotrastaurin Acetate, Soy Isoflavones, Soy Protein Isolate, Spanlecortemlocel, Sparfosate Sodium, Sparfosic Acid, Spartalizumab, Spebrutinib, Spherical Nucleic Acid Nanoparticle NU-0129, Spirogermanium, Spiromustine, Spiroplatin, Splicing Inhibitor H3B-8800, Spongistatin, Squalamine Lactate, SR-BP1/HSI Inhibitor SR31747A, SR-T100 Gel, Src Kinase Inhibitor AP 23846, Src Kinase Inhibitor KX2-391, Src Kinase Inhibitor KX2-391 Ointment, Src Kinase Inhibitor M475271, Src/Abl Kinase Inhibitor AZD0424, Src/tubulin Inhibitor KX02, SRPK1/ABCG2 Inhibitor SCO-101, ssRNA-based Immunomodulator CV8102, SSTR2-targeting Protein/DM1 Conjugate PEN-221, St. John's Wort, Stallimycin, Staphylococcal Enterotoxin A, Staphylococcal Enterotoxin B, STAT Inhibitor OPB-111077, STAT3 Inhibitor DSP-0337, STAT3 Inhibitor OPB-31121, STAT3 Inhibitor OPB-51602, STAT3 Inhibitor TTI-101, STAT3 Inhibitor WP1066, Staurosporine, STING Agonist BMS-986301, STING Agonist GSK3745417, STING Agonist IMSA101, STING Agonist MK-1454, STING Agonist SB 11285, STING Agonist TAK-676, STING-activating Cyclic Dinucleotide Agonist MIW815, STING-expressing E. coli SYNB1891, Streptonigrin, Streptozocin, Strontium Chloride Sr-89, Submicron Particle Paclitaxel Sterile Suspension, Sugemalimab, Sulfatinib, Sulforaphane, Sulindac, Sulofenur, Sumoylation Inhibitor TAK-981, Sunitinib, Sunitinib Malate, Super Enhancer Inhibitor GZ17-6.02, Superagonist Interleukin-15:Interleukin-15 Receptor alphaSu/Fc Fusion Complex ALT-803, Superoxide Dismutase Mimetic GC4711, Suramin, Suramin Sodium, Survivin Antigen, Survivin Antigen Vaccine DPX-Survivac, Survivin mRNA Antagonist EZN-3042, Survivin-expressing CVD908ssb-TXSVN Vaccine, Sustained-release Lipid Inhaled Cisplatin, Sustained-release Mitomycin C Hydrogel Formulation UGN-101, Sustained-release Mitomycin C Hydrogel Formulation UGN-102, Syk Inhibitor HMPL-523, Synchrotope TA2M Plasmid DNA Vaccine, Synchrovax SEM Plasmid DNA Vaccine, Synthetic Alkaloid PM00104, Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2, Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1, Synthetic hTERT DNA Vaccine INO-1400, Synthetic hTERT DNA Vaccine INO-1401, Synthetic Hypericin, Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201, Synthetic Long E6/E7 Peptides Vaccine HPV-01, Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b, Synthetic Plumbagin PCUR-101, T900607, Tabalumab, Tabelecleucel, Tacedinaline, Tafasitamab, Tagraxofusp-erzs, Talabostat, Talabostat Mesylate, Talacotuzumab, Talactoferrin Alfa, Taladegib, Talampanel, Talaporfin Sodium, Talazoparib, Taletrectinib, Talimogene Laherparepvec, Tallimustine, Talmapimod, Talotrexin, Talotrexin Ammonium, Taltobulin, TAM/c-Met Inhibitor RXDX-106, Tamibarotene, Taminadenant, Tamoxifen, Tamoxifen Citrate, Tamrintamab Pamozirine, Tandutinib, Tanespimycin, Tanibirumab, Tankyrase Inhibitor STP1002, Tanomastat, Tapotoclax, Tarenflurbil, Tarextumab, Tariquidar, Tasadenoturev, Taselisib, Tasidotin, Tasisulam, Tasisulam Sodium, Tasquinimod, Taurolidine, Tauromustine, Taurultam, Taurultam Analogue GP-2250, Tavokinogene Telseplasmid, Tavolimab, Taxane Analogue TPI 287, Taxane Compound, Taxol Analogue SID 530, Tazarotene, Tazemetostat, Tebentafusp, Teclistamab, Tecogalan Sodium, Tefinostat, Tegafur, Tegafur-gimeracil-oteracil Potassium, Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation, Tegafur-Uracil, Tegavivint, Teglarinad, Teglarinad Chloride, Telaglenastat, Telaglenastat Hydrochloride, Telapristone, Telapristone Acetate, Telatinib Mesylate, Telisotuzumab, Telisotuzumab Vedotin, Telomerase Inhibitor FJ5002, Telomerase-specific Type 5 Adenovirus OBP-301, Teloxantrone, Teloxantrone Hydrochloride, Telratolimod, Temarotene, Temoporfin, Temozolomide, Temsirolimus, Tenalisib, Tenifatecan, Teniposide, Tepoditamab, Tepotinib, Teprotumumab, Terameprocol, Terfluranol, Tergenpumatucel-L, Teroxirone, Tertomotide, Tesetaxel, Tesevatinib, Tesidolumab, Testolactone, Testosterone Enanthate, Tetanus Toxoid Vaccine, Tetradecanoylphorbol Acetate, Tetrahydrouridine, Tetraphenyl Chlorin Disulfonate, Tetrathiomolybdate, Tezacitabine, Tezacitabine Anhydrous, TGF-beta Receptor 1 Inhibitor PF-06952229, TGF-beta Receptor 1 Kinase Inhibitor SH3051, TGF-beta Receptor 1 Kinase Inhibitor YL-13027, TGFa-PE38 Immunotoxin, TGFbeta Inhibitor LY3200882, TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200, Thalicarpine, Thalidomide, Theliatinib, Theramide, Therapeutic Angiotensin-(1-7), Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907, Therapeutic Cancer Vaccine ATP128, Therapeutic Estradiol, Therapeutic Hydrocortisone, Therapeutic Liver Cancer Peptide Vaccine IMA970A, Thiarabine, Thiodiglycol, Thioguanine, Thioguanine Anhydrous, Thioinosine, Thioredoxin-1 Inhibitor PX-12, Thiotepa, Thioureidobutyronitrile, THL-P, Thorium Th 227 Anetumab, Thorium Th 227 Anetumab Corixetan, Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439, Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497, Threonine Tyrosine Kinase Inhibitor CFI-402257, Thymidylate Synthase Inhibitor CX1106, Thymidylate Synthase Inhibitor DFP-11207, Thymopentin, Thyroid Extract, Tiazofurin, Tidutamab, Tigapotide, Tigatuzumab, TIGIT Inhibitor M6223, TIGIT-targeting Agent MK-7684, Tilarginine, Tilogotamab, Tilsotolimod Sodium, Timonacic, Tin Ethyl Etiopurpurin, Tinostamustine, Tinzaparin Sodium, Tiomolibdate Choline, Tiomolibdate Diammonium, Tipapkinogene Sovacivec, Tipifarnib, Tipiracil, Tipiracil Hydrochloride, Tirabrutinib, Tiragolumab, Tirapazamine, Tirbanibulin, Tisagenlecleucel, Tislelizumab, Tisotumab Vedotin, Tivantinib, Tivozanib, TLC ELL-12, TLR Agonist BDB001, TLR Agonist BSG-001, TLR Agonist CADI-05, TLR-Directed Cationic Lipid-DNA Complex JVRS-100, TLR7 Agonist 852A, TLR7 agonist BNT411, TLR7 Agonist LHC165, TLR7/8/9 Antagonist IMO-8400, TLR8 Agonist DN1508052, TLR9 Agonist AST-008, TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells, Tocilizumab, Tocladesine, Tocotrienol, Tocotrienol-rich Fraction, Tolebrutinib, Toll-like Receptor 7 Agonist DSP-0509, Tolnidamine, Tomaralimab, Tomato-Soy Juice, Tomivosertib, Topical Betulinic Acid, Topical Celecoxib, Topical Fluorouracil, Topical Gemcitabine Hydrochloride, Topical Potassium Dobesilate, Topical Trichloroacetic Acid, Topixantrone, Topoisomerase I Inhibitor Genz-644282, Topoisomerase I Inhibitor LMP400, Topoisomerase I Inhibitor LMP776, Topoisomerase I/II Inhibitor NEV-801, Topoisomerase-1 Inhibitor LMP744, Topoisomerase-II Inhibitor Racemic XK469, Topoisomerase-II-beta Inhibitor Racemic XK469, Topotecan, Topotecan Hydrochloride, Topotecan Hydrochloride Liposomes, Topotecan Sustained-release Episcleral Plaque, Topsalysin, TORC1/2 Kinase Inhibitor DS-3078a, Toremifene, Toremifene Citrate, Toripalimab, Tosedostat, Tositumomab, Total Androgen Blockade, Tovetumab, Tozasertib Lactate, TP40 Immunotoxin, Trabectedin, Trabedersen, TRAIL Receptor Agonist ABBV-621, Trametinib, Trametinib Dimethyl Sulfoxide, Trans Sodium Crocetinate, Transdermal 17beta-Estradiol Gel BHR-200, Transdermal 4-Hydroxytestosterone, Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01, Transferrin Receptor-Targeted Liposomal p53 cDNA, Transferrin-CRM107, Tranylcypromine Sulfate, Trapoxin, Trastuzumab, Trastuzumab Conjugate BI-CON-02, Trastuzumab Deruxtecan, Trastuzumab Duocarmazine, Trastuzumab Emtansine, Trastuzumab Monomethyl Auristatin F, Trastuzumab-TLR 7/8 Agonist BDC-1001, Trastuzumab/Hyaluronidase-oysk, Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502, Trebananib, Tremelimumab, Treosulfan, Tretazicar, Tretinoin, Tretinoin Liposome, Triamcinolone Acetonide, Triamcinolone Hexacetonide, Triapine, Triazene Derivative CB10-277, Triazene Derivative TriN2755, Triazinate, Triaziquone, Tributyrin, Triciribine Phosphate, Trientine Hydrochloride, Triethylenemelamine, Trifluridine, Trifluridine and Tipiracil Hydrochloride, Trigriluzole, Trilaciclib, Trimelamol, Trimeric GITRL-Fc OMP-336B11, Trimethylcolchicinic Acid, Trimetrexate, Trimetrexate Glucuronate, Trioxifene, Triplatin Tetranitrate, Triptolide Analog, Triptorelin, Triptorelin Pamoate, Tris-acryl Gelatin Microspheres, Tritylcysteine, TRK Inhibitor AZD6918, TRK Inhibitor TQB3558, TrkA Inhibitor VMD-928, Trodusquemine, Trofosfamide, Troglitazone, Tropomyosin Receptor Kinase Inhibitor AZD7451, Troriluzole, Troxacitabine, Troxacitabine Nucleotide Prodrug MIV-818, TRPM8 Agonist D-3263, TRPV6 Calcium Channel Inhibitor SOR-C13, TSP-1 Mimetic ABT-510, TSP-1 Mimetic Fusion Protein CVX-045, Tubercidin, Tubulin Binding Agent TTI-237, Tubulin Inhibitor ALB 109564 Dihydrochloride, Tubulin Inhibitor ALB-109564, Tubulin Polymerization Inhibitor AEZS 112, Tubulin Polymerization Inhibitor CKD-516, Tubulin Polymerization Inhibitor VERU-111, Tubulin-Binding Agent SSR97225, Tucatinib, Tucidinostat, Tucotuzumab Celmoleukin, Tyroserleutide, Tyrosinase Peptide, Tyrosinase-KLH, Tyrosinase:146-156 Peptide, Tyrosine Kinase Inhibitor, Tyrosine Kinase Inhibitor OSI-930, Tyrosine Kinase Inhibitor SU5402, Tyrosine Kinase Inhibitor TL-895, Tyrosine Kinase Inhibitor XL228, UAE Inhibitor TAK-243, Ubenimex, Ubidecarenone Nanodispersion BPM31510n, Ublituximab, Ulinastatin, Ulixertinib, Ulocuplumab, Umbralisib, Uncaria tomentosa Extract, Upamostat, Upifitamab, Uproleselan, Uprosertib, Urabrelimab, Uracil Ointment, Urelumab, Uroacitides, Urokinase-Derived Peptide A6, Ursolic Acid, USP14/UCHL5 Inhibitor VLX1570, Utomilumab, Uzansertib, V930 Vaccine, Vaccine-Sensitized Draining Lymph Node Cells, Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules, Vactosertib, Vadacabtagene Leraleucel, Vadastuximab Talirine, Vadimezan, Valecobulin, Valemetostat, Valproic Acid, Valrubicin, Valspodar, Vandetanib, Vandetanib-eluting Radiopaque Bead BTG-002814, Vandortuzumab Vedotin, Vantictumab, Vanucizumab, Vapreotide, Varlilumab, Varlitinib, Varlitinib Tosylate, Vascular Disrupting Agent BNC105, Vascular Disrupting Agent BNC105P, Vascular Disrupting Agent ZD6126, Vatalanib, Vatalanib Succinate, Vecabrutinib, Vector-peptide Conjugated Paclitaxel, Vedolizumab, VEGF Inhibitor PTC299, VEGF/HGF-targeting DARPin MP0250, VEGFR Inhibitor KRN951, VEGFR-2 DNA Vaccine VXM01, VEGFR/FGFR Inhibitor ODM-203, VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593, VEGFR2 Tyrosine Kinase Inhibitor PF-00337210, VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813, Veliparib, Veltuzumab, Vemurafenib, Venetoclax, Verapamil, Verpasep Caltespen, Verubulin, Verubulin Hydrochloride, Vesencumab, Vesigenurtucel-L, VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220, VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820, Viagenpumatucel-L, Vibecotamab, Vibostolimab, Vilaprisan, Vinblastine, Vinblastine Sulfate, Vincristine, Vincristine Liposomal, Vincristine Sulfate, Vincristine Sulfate Liposome, Vindesine, Vinepidine, Vinflunine, Vinflunine Ditartrate, Vinfosiltine, Vinorelbine, Vinorelbine Tartrate, Vinorelbine Tartrate Emulsion, Vinorelbine Tartrate Oral, Vintafolide, Vinzolidine, Vinzolidine Sulfate, Virulizin, Vismodegib, Vistusertib, Vitamin D3 Analogue ILX23-7553, Vitamin E Compound, Vitespen, VLP-encapsulated TLR9 Agonist CMP-001, Vocimagene Amiretrorepvec, Vofatamab, Volasertib, Volociximab, Vonlerolizumab, Vopratelimab, Vorasidenib, Vorinostat, Vorolanib, Vorsetzumab Mafodotin, Vosaroxin, Vosilasarm, Voxtalisib, Vulinacimab, Warfarin Sodium, Wee1 Inhibitor ZN-c3, Wee1 Kinase Inhibitor Debio 0123, White Carrot, Wnt Signaling Inhibitor SM04755, Wnt Signaling Pathway Inhibitor SM08502, Wnt-5a Mimic Hexapeptide Foxy-5, Wobe-Mugos E, WT1 Peptide Vaccine OCV-501, WT1 Peptide Vaccine WT2725, WT1 Protein-derived Peptide Vaccine DSP-7888, WT1-A10/AS01B Immunotherapeutic GSK2130579A, WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401, Xanthohumol, XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410, Xeloda, Xentuzumab, Xevinapant, Xiaoai Jiedu Decoction, XIAP Antisense Oligonucleotide AEG35156, XIAP/cIAP1 Antagonist ASTX660, Xiliertinib, Xisomab 3G3, XPO1 Inhibitor SL-801, Y 90 Monoclonal Antibody CC49, Y 90 Monoclonal Antibody HMFG1, Y 90 Monoclonal Antibody Lym-1, Y 90 Monoclonal Antibody m170, Y 90 Monoclonal Antibody M195, Yang Yin Fu Zheng, Yangzheng Xiaoji Extract, Yiqi-yangyin-jiedu Herbal Decoction, Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8, Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101, Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66, Yttrium Y 90 Basiliximab, Yttrium Y 90 Colloid, Yttrium Y 90 Daclizumab, Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A, Yttrium Y 90 Glass Microspheres, Yttrium Y 90 Monoclonal Antibody B3, Yttrium Y 90 Monoclonal Antibody BrE-3, Yttrium Y 90 Monoclonal Antibody Hu3S193, Yttrium Y 90 Monoclonal Antibody MN-14, Yttrium Y 90 Resin Microspheres, Yttrium Y 90 Tabituximab Barzuxetan, Yttrium Y 90-DOTA-Biotin, Yttrium Y 90-DOTA-di-HSG Peptide IMP-288, Yttrium Y 90-Edotreotide, Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101, Yttrium Y-90 Clivatuzumab Tetraxetan, Yttrium Y-90 Epratuzumab Tetraxetan, Yttrium Y-90 Ibritumomab Tiuxetan, Yttrium Y-90 Tacatuzumab Tetraxetan, Yttrium-90 Polycarbonate Brachytherapy Plaque, Z-Endoxifen Hydrochloride, Zalcitabine, Zalifrelimab, Zalutumumab, Zandelisib, Zanidatamab, Zanolimumab, Zanubrutinib, Zebularine, Zelavespib, Zibotentan, Zinc Finger Nuclease ZFN-603, Zinc Finger Nuclease ZFN-758, Zinostatin, Zinostatin Stimalamer, Zirconium Zr 89 Panitumumab, Ziv-Aflibercept, Zolbetuximab, Zoledronic Acid, Zoptarelin Doxorubicin, Zorifertinib, Zorubicin, Zorubicin Hydrochloride, Zotatifin, Zotiraciclib Citrate, Zuclomiphene Citrate, Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, +Individual Metastasis Stage,Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"M0, M1, M1a, M1b, M1c, MX, cM0 (i+), Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, +Individual Recurrence Status,Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment.,"Yes, Unknown, Not Reported, Not Applicable, Not Allowed to Collect, No, Censored",,FALSE,,,,CDS Imaging v1.0, +Individual Treatment Response,Text term that describes the patient's final outcome after the treatment was administered.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, +Institution,Institutions participating in consortia activities,,"Component, Institution Name, Institution Full Name, Institution Alias, Institution Location State, Institution Location City, Rorid",FALSE,,,,, +Institution Name,"Machine readable name of the institution. (e.g. ArizonaStatUniversity, BostonUniversity, etc.)",,,TRUE,,,,, +Institution Full Name,"Human readable, full name of the institution. (e.g. Arizona State University, Boston University, etc.)",,,TRUE,,,,, +Institution Alias,"Alias of the institution (e.g. ASU, BU, etc.)",,,TRUE,,,,,unique +Institution Location State,"The US state the institution is located in. Use Not Applicable, if not applicable. ","Alabama, Alaska, American Samoa, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, District of Columbia, Florida, Georgia, Guam, Hawaii, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Minor Outlying Islands, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Northern Mariana Islands, Not Applicable, Ohio, Oklahoma, Oregon, Pennsylvania, Puerto Rico, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, U.S. Virgin Islands, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin, Wyoming",,TRUE,,,,, +Institution Location City,The City the institution is located in. ,,,TRUE,,,,, +Rorid,Unique identifier (ROR ID) of an the institution,,,TRUE,,,,, +Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Type, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, +Model_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,,unique +Model Age,"The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)",,,FALSE,,,,,num +Model Age Unit,The unit corresponding to the age provided for this model.,,,FALSE,,,,,str +Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,, +Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, +Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like +Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like +Model Type,The general label used to identify the model type.,,,FALSE,,,,,str +Model Method,The term that describes the general method used to create the model.,,,FALSE,,,,,str +Model Source,"The reference organism from which the model was derived, if applicable. This could be a specific Biospecimen Key, Model Key, mouse type, cell line, or other reference. Provide RRID if available, to link to existing cell line information. Do not use this field to designate an Individual as the source of the model.",,,FALSE,,,,,str +Model Acquisition Type,"The method by which the model was obtained. If applicable, please provide a link to the supplier of the model source.",,,FALSE,,,,,str +Model Graft Source,"If the model is an allograft or xenograft, as indicated by Model Type, please provide a unique identifier associated with the source of the graft material (e.g., RRID, Individual Key, Model Key, Biospecimen Key)",,,FALSE,,,,,str +Model Genotype,"The relevant genotype information associated with the model, including markers, background, etc.",,,FALSE,,,,,str +Model Treatment Type,Text term that describes the kind of treatment applied to the model.,"3-Dimensional Conformal Radiation Therapy, Allogeneic Hematopoietic Stem Cell Transplantation, Autologous Stem Cell Transplantation, Brachytherapy, Cellular Therapy, Chemotherapy, Concurrent Chemoradiation, Conventional Radiotherapy, Electron Beam Radiation Therapy, External Beam Radiation Therapy, High-Dose Rate Brachytherapy, Hormone Therapy, Immunotherapy, Intensity-Modulated Radiation Therapy, Low-Dose Rate Brachytherapy, Not Reported, Organ Transplantation, Palliative Care, Pharmacotherapy, Photon Beam Radiation Therapy, Proton Beam Radiation Therapy, Radiation Therapy, Radiofrequency Ablation, Radiopharmaceutical, Stem Cell Transplant, Stereotactic Body Radiation Therapy, Stereotactic Radiosurgery, Surgical Procedure, Targeted Molecular Therapy, Unknown",,FALSE,,,,, +Model Therapeutic Agent,Text identification of the individual agent(s) used as part of an experimental protocol performed using the model.,"10-Deacetyltaxol, 11C Topotecan, 11D10 AluGel Anti-Idiotype Monoclonal Antibody, 12-Allyldeoxoartemisinin, 13-Deoxydoxorubicin, 14C BMS-275183, 17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521, 2-Deoxy-D-glucose, 2-Ethylhydrazide, 2-Fluoroadenine, 2-Fluorofucose-containing SGN-2FF, 2-Hydroxyestradiol, 2-Hydroxyestrone, 2-Hydroxyflutamide Depot, 2-Hydroxyoleic Acid, 2-Methoxyestradiol, 2-Methoxyestradiol Nanocrystal Colloidal Dispersion, 2-Methoxyestrone, 2-O; 3-O Desulfated Heparin, 2;6-Diaminopurine, 2;6-Dimethoxyquinone, 2'-F-ara-deoxyuridine, 3'-C-ethynylcytidine, 3'-dA Phosphoramidate NUC-7738, 4-Nitroestrone 3-Methyl Ether, 4-Thio-2-deoxycytidine, 4'-Iodo-4'-Deoxydoxorubicin, 5-Aza-4'-thio-2'-deoxycytidine, 5-Fluoro-2-Deoxycytidine, 6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158, 7-Cyanoquinocarcinol, 7-Ethyl-10-Hydroxycamptothecin, 7-Hydroxystaurosporine, 8-Azaguanine, 9-Ethyl 6-Mercaptopurine, 9H-Purine-6Thio-98D, A2A Receptor Antagonist EOS100850, Abagovomab, Abarelix, Abemaciclib, Abemaciclib Mesylate, Abexinostat, Abexinostat Tosylate, Abiraterone, Abiraterone Acetate, Abituzumab, Acai Berry Juice, Acalabrutinib, Acalisib, Aceglatone, Acetylcysteine, Acitretin, Acivicin, Aclacinomycin B, Aclarubicin, Acodazole, Acodazole Hydrochloride, Acolbifene Hydrochloride, Acridine, Acridine Carboxamide, Acronine, Actinium Ac 225 Lintuzumab, Actinium Ac 225-FPI-1434, Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591, Actinomycin C2, Actinomycin C3, Actinomycin F1, Activin Type 2B Receptor Fc Fusion Protein STM 434, Acyclic Nucleoside Phosphonate Prodrug ABI-1968, Ad-RTS-hIL-12, Adagloxad Simolenin, Adavosertib, Adecatumumab, Adenosine A2A Receptor Antagonist AZD4635, Adenosine A2A Receptor Antagonist CS3005, Adenosine A2A Receptor Antagonist NIR178, Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999, Adenosine A2A/A2B Receptor Antagonist AB928, Adenosine A2B Receptor Antagonist PBF-1129, Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201, Adenoviral Brachyury Vaccine ETBX-051, Adenoviral Cancer Vaccine PF-06936308, Adenoviral MUC1 Vaccine ETBX-061, Adenoviral PSA Vaccine ETBX-071, Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001, Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP, Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901, Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE, Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918, Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931, Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3, Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001, Aderbasib, ADH-1, AE37 Peptide/GM-CSF Vaccine, AEE788, Aerosol Gemcitabine, Aerosolized Aldesleukin, Aerosolized Liposomal Rubitecan, Afatinib, Afatinib Dimaleate, Afimoxifene, Afuresertib, Agatolimod Sodium, Agerafenib, Aglatimagene Besadenovec, Agonistic Anti-CD40 Monoclonal Antibody ADC-1013, Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949, Agonistic Anti-OX40 Monoclonal Antibody MEDI6469, AKR1C3-activated Prodrug OBI-3424, AKT 1/2 Inhibitor BAY1125976, AKT Inhibitor ARQ 092, Akt Inhibitor LY2780301, Akt Inhibitor MK2206, Akt Inhibitor SR13668, Akt/ERK Inhibitor ONC201, Alacizumab Pegol, Alanosine, Albumin-binding Cisplatin Prodrug BTP-114, Aldesleukin, Aldoxorubicin, Alectinib, Alefacept, Alemtuzumab, Alestramustine, Alflutinib Mesylate, Algenpantucel-L, Alisertib, Alitretinoin, ALK Inhibitor, ALK Inhibitor ASP3026, ALK Inhibitor PLB 1003, ALK Inhibitor RO5424802, ALK Inhibitor TAE684, ALK Inhibitor WX-0593, ALK-2 Inhibitor TP-0184, ALK-FAK Inhibitor CEP-37440, ALK/c-Met Inhibitor TQ-B3139, ALK/FAK/Pyk2 Inhibitor CT-707, ALK/ROS1/Met Inhibitor TQ-B3101, ALK/TRK Inhibitor TSR-011, Alkotinib, Allodepleted T Cell Immunotherapeutic ATIR101, Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715, Allogeneic Anti-BCMA-CAR T-cells PBCAR269A, Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells, Allogeneic Anti-CD19 CAR T-cells ALLO-501A, Allogeneic Anti-CD19 Universal CAR-T Cells CTA101, Allogeneic Anti-CD19-CAR T-cells PBCAR0191, Allogeneic Anti-CD20 CAR T-cells LUCAR-20S, Allogeneic Anti-CD20-CAR T-cells PBCAR20A, Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22, Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100, Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001, Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001, Allogeneic Cellular Vaccine 1650-G, Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120, Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130, Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A, Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM, Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine, Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo, Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo, Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2, Allogeneic Irradiated Melanoma Cell Vaccine CSF470, Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307, Allogeneic Melanoma Vaccine AGI-101H, Allogeneic Natural Killer Cell Line MG4101, Allogeneic Natural Killer Cell Line NK-92, Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01, Allogeneic Renal Cell Carcinoma Vaccine MGN1601, Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19, Allosteric ErbB Inhibitor BDTX-189, Allovectin-7, Almurtide, Alobresib, Alofanib, Alpelisib, Alpha Galactosylceramide, Alpha V Beta 1 Inhibitor ATN-161, Alpha V Beta 8 Antagonist PF-06940434, alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801, Alpha-Gal AGI-134, Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H, Alpha-Thioguanine Deoxyriboside, Alpha-tocopheryloxyacetic Acid, Alsevalimab, Altiratinib, Altretamine, Alvespimycin, Alvespimycin Hydrochloride, Alvocidib, Alvocidib Hydrochloride, Alvocidib Prodrug TP-1287, Amatuximab, Ambamustine, Ambazone, Amblyomin-X, Amcasertib, Ametantrone, Amifostine, Amino Acid Injection, Aminocamptothecin, Aminocamptothecin Colloidal Dispersion, Aminoflavone Prodrug AFP464, Aminopterin, Aminopterin Sodium, Amivantamab, Amolimogene Bepiplasmid, Amonafide L-Malate, Amrubicin, Amrubicin Hydrochloride, Amsacrine, Amsacrine Lactate, Amsilarotene, Amustaline, Amustaline Dihydrochloride, Amuvatinib, Amuvatinib Hydrochloride, Anakinra, Anastrozole, Anaxirone, Ancitabine, Ancitabine Hydrochloride, Andecaliximab, Androgen Antagonist APC-100, Androgen Receptor Antagonist BAY 1161116, Androgen Receptor Antagonist SHR3680, Androgen Receptor Antagonist TAS3681, Androgen Receptor Antagonist TRC253, Androgen Receptor Antisense Oligonucleotide AZD5312, Androgen Receptor Antisense Oligonucleotide EZN-4176, Androgen Receptor Degrader ARV-110, Androgen Receptor Degrader CC-94676, Androgen Receptor Downregulator AZD3514, Androgen Receptor Inhibitor EPI-7386, Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118, Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10, Andrographolide, Androstane Steroid HE3235, Anetumab Ravtansine, Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241, Angiogenesis Inhibitor GT-111, Angiogenesis Inhibitor JI-101, Angiogenesis/Heparanase Inhibitor PG545, Angiopoietin-2-specific Fusion Protein PF-04856884, Anhydrous Enol-oxaloacetate, Anhydrovinblastine, Aniline Mustard, Anlotinib Hydrochloride, Annamycin, Annamycin Liposomal, Annonaceous Acetogenins, Ansamitomicin P-3, Anthramycin, Anthrapyrazole, Anti c-KIT Antibody-drug Conjugate LOP628, Anti-5T4 Antibody-drug Conjugate ASN004, Anti-5T4 Antibody-Drug Conjugate PF-06263507, Anti-5T4 Antibody-drug Conjugate SYD1875, Anti-A33 Monoclonal Antibody KRN330, Anti-A5B1 Integrin Monoclonal Antibody PF-04605412, Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087, Anti-AG7 Antibody Drug Conjugate AbGn-107, Anti-AGS-16 Monoclonal Antibody AGS-16M18, Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME, Anti-AGS-8 Monoclonal Antibody AGS-8M4, Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B, Anti-alpha5beta1 Integrin Antibody MINT1526A, Anti-ANG2 Monoclonal Antibody MEDI-3617, Anti-angiopoietin Monoclonal Antibody AMG 780, Anti-APRIL Monoclonal Antibody BION-1301, Anti-AXL Fusion Protein AVB-S6-500, Anti-AXL/PBD Antibody-drug Conjugate ADCT-601, Anti-B7-H3 Antibody DS-5573a, Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a, Anti-B7-H4 Monoclonal Antibody FPA150, Anti-B7H3 Antibody-drug Conjugate MGC018, Anti-BCMA Antibody SEA-BCMA, Anti-BCMA Antibody-drug Conjugate AMG 224, Anti-BCMA Antibody-drug Conjugate CC-99712, Anti-BCMA Antibody-drug Conjugate GSK2857916, Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA, Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459, Anti-BCMA/CD3 BiTE Antibody AMG 420, Anti-BCMA/CD3 BiTE Antibody AMG 701, Anti-BCMA/CD3 BiTE Antibody REGN5458, Anti-BCMA/PBD ADC MEDI2228, Anti-BTLA Monoclonal Antibody TAB004, Anti-BTN3A Agonistic Monoclonal Antibody ICT01, Anti-c-fms Monoclonal Antibody AMG 820, Anti-c-KIT Monoclonal Antibody CDX 0158, Anti-c-Met Antibody-drug Conjugate HTI-1066, Anti-c-Met Antibody-drug Conjugate TR1801, Anti-c-Met Monoclonal Antibody ABT-700, Anti-c-Met Monoclonal Antibody ARGX-111, Anti-c-Met Monoclonal Antibody HLX55, Anti-c-MET Monoclonal Antibody LY2875358, Anti-C-met Monoclonal Antibody SAIT301, Anti-C4.4a Antibody-Drug Conjugate BAY1129980, Anti-C5aR Monoclonal Antibody IPH5401, Anti-CA19-9 Monoclonal Antibody 5B1, Anti-CA6-DM4 Immunoconjugate SAR566658, Anti-CCR7 Antibody-drug Conjugate JBH492, Anti-CD117 Monoclonal Antibody JSP191, Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1, Anti-CD123 ADC IMGN632, Anti-CD123 Monoclonal Antibody CSL360, Anti-CD123 Monoclonal Antibody KHK2823, Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404, Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A, Anti-CD123/CD3 Bispecific Antibody APVO436, Anti-CD123/CD3 Bispecific Antibody JNJ-63709178, Anti-CD123/CD3 BiTE Antibody SAR440234, Anti-CD137 Agonistic Monoclonal Antibody ADG106, Anti-CD137 Agonistic Monoclonal Antibody AGEN2373, Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017, Anti-CD137 Agonistic Monoclonal Antibody CTX-471, Anti-CD137 Agonistic Monoclonal Antibody LVGN6051, Anti-CD157 Monoclonal Antibody MEN1112, Anti-CD166 Probody-drug Conjugate CX-2009, Anti-CD19 Antibody-drug Conjugate SGN-CD19B, Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003, Anti-CD19 iCAR NK Cells, Anti-CD19 Monoclonal Antibody DI-B4, Anti-CD19 Monoclonal Antibody MDX-1342, Anti-CD19 Monoclonal Antibody MEDI-551, Anti-CD19 Monoclonal Antibody XmAb5574, Anti-CD19-DM4 Immunoconjugate SAR3419, Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL, Anti-CD19/CD22 CAR NK Cells, Anti-CD19/CD3 BiTE Antibody AMG 562, Anti-CD19/CD3 Tetravalent Antibody AFM11, Anti-CD20 Monoclonal Antibody B001, Anti-CD20 Monoclonal Antibody BAT4306F, Anti-CD20 Monoclonal Antibody MIL62, Anti-CD20 Monoclonal Antibody PRO131921, Anti-CD20 Monoclonal Antibody SCT400, Anti-CD20 Monoclonal Antibody TL011, Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002, Anti-CD20-engineered Toxin Body MT-3724, Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323, Anti-CD20/CD3 Monoclonal Antibody REGN1979, Anti-CD20/CD3 Monoclonal Antibody XmAb13676, Anti-CD205 Antibody-drug Conjugate OBT076, Anti-CD22 ADC TRPH-222, Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S, Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A, Anti-CD25 Monoclonal Antibody RO7296682, Anti-CD25-PBD Antibody-drug Conjugate ADCT-301, Anti-CD26 Monoclonal Antibody YS110, Anti-CD27 Agonistic Monoclonal Antibody MK-5890, Anti-CD27L Antibody-Drug Conjugate AMG 172, Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1), Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957, Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135, Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05, Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564, Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119, Anti-CD3/CD20 Bispecific Antibody GEN3013, Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424, Anti-CD3/CD7-Ricin Toxin A Immunotoxin, Anti-CD30 Monoclonal Antibody MDX-1401, Anti-CD30 Monoclonal Antibody XmAb2513, Anti-CD30/CD16A Monoclonal Antibody AFM13, Anti-CD30/DM1 Antibody-drug Conjugate F0002, Anti-CD32B Monoclonal Antibody BI-1206, Anti-CD33 Antibody-drug Conjugate IMGN779, Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564, Anti-CD33 Monoclonal Antibody BI 836858, Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633, Anti-CD33/CD3 Bispecific Antibody GEM 333, Anti-CD33/CD3 Bispecific Antibody JNJ-67571244, Anti-CD33/CD3 BiTE Antibody AMG 330, Anti-CD33/CD3 BiTE Antibody AMG 673, Anti-CD352 Antibody-drug Conjugate SGN-CD352A, Anti-CD37 Antibody-Drug Conjugate IMGN529, Anti-CD37 Bispecific Monoclonal Antibody GEN3009, Anti-CD37 MMAE Antibody-drug Conjugate AGS67E, Anti-CD37 Monoclonal Antibody BI 836826, Anti-CD38 Antibody-drug Conjugate STI-6129, Anti-CD38 Monoclonal Antibody MOR03087, Anti-CD38 Monoclonal Antibody SAR442085, Anti-CD38 Monoclonal Antibody TAK-079, Anti-CD38-targeted IgG4-attenuated IFNa TAK-573, Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257, Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342, Anti-CD39 Monoclonal Antibody SRF617, Anti-CD39 Monoclonal Antibody TTX-030, Anti-CD40 Agonist Monoclonal Antibody ABBV-927, Anti-CD40 Agonist Monoclonal Antibody CDX-1140, Anti-CD40 Monoclonal Antibody Chi Lob 7/4, Anti-CD40 Monoclonal Antibody SEA-CD40, Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042, Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428, Anti-CD40L Fc-Fusion Protein BMS-986004, Anti-CD44 Monoclonal Antibody RO5429083, Anti-CD45 Monoclonal Antibody AHN-12, Anti-CD46 Antibody-drug Conjugate FOR46, Anti-CD47 ADC SGN-CD47M, Anti-CD47 Monoclonal Antibody AO-176, Anti-CD47 Monoclonal Antibody CC-90002, Anti-CD47 Monoclonal Antibody Hu5F9-G4, Anti-CD47 Monoclonal Antibody IBI188, Anti-CD47 Monoclonal Antibody IMC-002, Anti-CD47 Monoclonal Antibody SHR-1603, Anti-CD47 Monoclonal Antibody SRF231, Anti-CD47 Monoclonal Antibody TJC4, Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801, Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A, Anti-CD52 Monoclonal Antibody ALLO-647, Anti-CD70 Antibody-Drug Conjugate MDX-1203, Anti-CD70 Antibody-drug Conjugate SGN-CD70A, Anti-CD70 CAR-expressing T Lymphocytes, Anti-CD70 Monoclonal Antibody MDX-1411, Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029, Anti-CD73 Monoclonal Antibody BMS-986179, Anti-CD73 Monoclonal Antibody CPI-006, Anti-CD73 Monoclonal Antibody NZV930, Anti-CD73 Monoclonal Antibody TJ4309, Anti-CD74 Antibody-drug Conjugate STRO-001, Anti-CD98 Monoclonal Antibody IGN523, Anti-CDH6 Antibody-drug Conjugate HKT288, Anti-CEA BiTE Monoclonal Antibody AMG211, Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody, Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2, Anti-CEACAM1 Monoclonal Antibody CM-24, Anti-CEACAM5 Antibody-Drug Conjugate SAR408701, Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47, Anti-CEACAM6 Antibody BAY1834942, Anti-claudin18.2 Monoclonal Antibody AB011, Anti-Claudin18.2 Monoclonal Antibody TST001, Anti-CLDN6 Monoclonal Antibody ASP1650, Anti-CLEC12A/CD3 Bispecific Antibody MCLA117, Anti-CLEVER-1 Monoclonal Antibody FP-1305, Anti-CSF1 Monoclonal Antibody PD-0360324, Anti-CSF1R Monoclonal Antibody IMC-CS4, Anti-CSF1R Monoclonal Antibody SNDX-6352, Anti-CTGF Monoclonal Antibody FG-3019, Anti-CTLA-4 Monoclonal Antibody ADG116, Anti-CTLA-4 Monoclonal Antibody ADU-1604, Anti-CTLA-4 Monoclonal Antibody AGEN1181, Anti-CTLA-4 Monoclonal Antibody BCD-145, Anti-CTLA-4 Monoclonal Antibody HBM4003, Anti-CTLA-4 Monoclonal Antibody MK-1308, Anti-CTLA-4 Monoclonal Antibody ONC-392, Anti-CTLA-4 Monoclonal Antibody REGN4659, Anti-CTLA-4 Probody BMS-986288, Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217, Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841, Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015, Anti-CTLA4 Antibody Fc Fusion Protein KN044, Anti-CTLA4 Monoclonal Antibody BMS-986218, Anti-CXCR4 Monoclonal Antibody PF-06747143, Anti-Denatured Collagen Monoclonal Antibody TRC093, Anti-DKK-1 Monoclonal Antibody LY2812176, Anti-DKK1 Monoclonal Antibody BHQ880, Anti-DLL3/CD3 BiTE Antibody AMG 757, Anti-DLL4 Monoclonal Antibody MEDI0639, Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83, Anti-DR5 Agonist Monoclonal Antibody TRA-8, Anti-DR5 Agonistic Antibody DS-8273a, Anti-DR5 Agonistic Monoclonal Antibody INBRX-109, Anti-EGFR Monoclonal Antibody CPGJ 602, Anti-EGFR Monoclonal Antibody EMD 55900, Anti-EGFR Monoclonal Antibody GC1118, Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX, Anti-EGFR Monoclonal Antibody HLX-07, Anti-EGFR Monoclonal Antibody Mixture MM-151, Anti-EGFR Monoclonal Antibody RO5083945, Anti-EGFR Monoclonal Antibody SCT200, Anti-EGFR Monoclonal Antibody SYN004, Anti-EGFR TAP Antibody-drug Conjugate IMGN289, Anti-EGFR/c-Met Bispecific Antibody EMB-01, Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372, Anti-EGFR/CD16A Bispecific Antibody AFM24, Anti-EGFR/DM1 Antibody-drug Conjugate AVID100, Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013, Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321, Anti-EGFRvIII Antibody Drug Conjugate AMG 595, Anti-EGFRvIII Immunotoxin MR1-1, Anti-EGFRvIII/CD3 BiTE Antibody AMG 596, Anti-EGP-2 Immunotoxin MOC31-PE, Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F, Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F, Anti-Ep-CAM Monoclonal Antibody ING-1, Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310, Anti-EphA2 Monoclonal Antibody DS-8895a, Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547, Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111, Anti-ErbB3 Antibody ISU104, Anti-ErbB3 Monoclonal Antibody AV-203, Anti-ErbB3 Monoclonal Antibody CDX-3379, Anti-ErbB3 Monoclonal Antibody REGN1400, Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141, Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A, Anti-FAP/Interleukin-2 Fusion Protein RO6874281, Anti-FCRH5/CD3 BiTE Antibody BFCR4350A, Anti-FGFR2 Antibody BAY1179470, Anti-FGFR3 Antibody-drug Conjugate LY3076226, Anti-FGFR4 Monoclonal Antibody U3-1784, Anti-FLT3 Antibody-drug Conjugate AGS62P1, Anti-FLT3 Monoclonal Antibody 4G8-SDIEM, Anti-FLT3 Monoclonal Antibody IMC-EB10, Anti-FLT3/CD3 BiTE Antibody AMG 427, Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002, Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202, Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012, Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962, Anti-GARP Monoclonal Antibody ABBV-151, Anti-GCC Antibody-Drug Conjugate MLN0264, Anti-GCC Antibody-Drug Conjugate TAK-164, Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody, Anti-GD2 Monoclonal Antibody hu14.18K322A, Anti-GD2 Monoclonal Antibody MORAb-028, Anti-GD3 Antibody-drug Conjugate PF-06688992, Anti-GITR Agonistic Monoclonal Antibody ASP1951, Anti-GITR Agonistic Monoclonal Antibody BMS-986156, Anti-GITR Agonistic Monoclonal Antibody INCAGN01876, Anti-GITR Monoclonal Antibody GWN 323, Anti-GITR Monoclonal Antibody MK-4166, Anti-Globo H Monoclonal Antibody OBI-888, Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999, Anti-Glypican 3/CD3 Bispecific Antibody ERY974, Anti-GnRH Vaccine PEP223, Anti-gpA33/CD3 Monoclonal Antibody MGD007, Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a, Anti-gremlin-1 Monoclonal Antibody UCB6114, Anti-GRP78 Monoclonal Antibody PAT-SM6, Anti-HA Epitope Monoclonal Antibody MEDI8852, Anti-HB-EGF Monoclonal Antibody KHK2866, Anti-HBEGF Monoclonal Antibody U3-1565, Anti-hepcidin Monoclonal Antibody LY2787106, Anti-HER-2 Bispecific Antibody KN026, Anti-HER2 ADC DS-8201a, Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702, Anti-HER2 Antibody-drug Conjugate A166, Anti-HER2 Antibody-drug Conjugate ARX788, Anti-HER2 Antibody-drug Conjugate BAT8001, Anti-HER2 Antibody-drug Conjugate DP303c, Anti-HER2 Antibody-drug Conjugate MEDI4276, Anti-HER2 Antibody-drug Conjugate RC48, Anti-HER2 Bi-specific Monoclonal Antibody ZW25, Anti-HER2 Bispecific Antibody-drug Conjugate ZW49, Anti-HER2 Immune Stimulator-antibody Conjugate NJH395, Anti-HER2 Monoclonal Antibody B002, Anti-HER2 Monoclonal Antibody CT-P6, Anti-HER2 Monoclonal Antibody HLX22, Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343, Anti-HER2-DM1 ADC B003, Anti-HER2-DM1 Antibody-drug Conjugate GQ1001, Anti-HER2-vc0101 ADC PF-06804103, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A, Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302, Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128, Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522, Anti-HER2/MMAE Antibody-drug Conjugate MRG002, Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A, Anti-HER3 Antibody-drug Conjugate U3 1402, Anti-HER3 Monoclonal Antibody GSK2849330, Anti-HGF Monoclonal Antibody TAK-701, Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968, Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1, Anti-HLA-DR Monoclonal Antibody IMMU-114, Anti-HLA-G Antibody TTX-080, Anti-human GITR Monoclonal Antibody AMG 228, Anti-human GITR Monoclonal Antibody TRX518, Anti-ICAM-1 Monoclonal Antibody BI-505, Anti-ICOS Agonist Antibody GSK3359609, Anti-ICOS Agonist Monoclonal Antibody BMS-986226, Anti-ICOS Monoclonal Antibody KY1044, Anti-ICOS Monoclonal Antibody MEDI-570, Anti-IGF-1R Monoclonal Antibody AVE1642, Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022, Anti-IL-1 alpha Monoclonal Antibody MABp1, Anti-IL-13 Humanized Monoclonal Antibody TNX-650, Anti-IL-15 Monoclonal Antibody AMG 714, Anti-IL-8 Monoclonal Antibody BMS-986253, Anti-IL-8 Monoclonal Antibody HuMax-IL8, Anti-ILDR2 Monoclonal Antibody BAY 1905254, Anti-ILT4 Monoclonal Antibody MK-4830, Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A, Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388, Anti-IRF4 Antisense Oligonucleotide ION251, Anti-KIR Monoclonal Antibody IPH 2101, Anti-KSP/Anti-VEGF siRNAs ALN-VSP02, Anti-LAG-3 Monoclonal Antibody IBI-110, Anti-LAG-3 Monoclonal Antibody INCAGN02385, Anti-LAG-3 Monoclonal Antibody LAG525, Anti-LAG-3 Monoclonal Antibody REGN3767, Anti-LAG-3/PD-L1 Bispecific Antibody FS118, Anti-LAG3 Monoclonal Antibody BI 754111, Anti-LAG3 Monoclonal Antibody MK-4280, Anti-LAG3 Monoclonal Antibody TSR-033, Anti-LAMP1 Antibody-drug Conjugate SAR428926, Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181, Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102, Anti-LGR5 Monoclonal Antibody BNC101, Anti-LIF Monoclonal Antibody MSC-1, Anti-LILRB4 Monoclonal Antibody IO-202, Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A, Anti-Ly6E Antibody-Drug Conjugate RG 7841, Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C, Anti-Melanin Monoclonal Antibody PTI-6D2, Anti-mesothelin Antibody-drug Conjugate BMS-986148, Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100, Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A, Anti-mesothelin/MMAE Antibody-drug Conjugate RC88, Anti-Met Monoclonal Antibody Mixture Sym015, Anti-Met/EGFR Monoclonal Antibody LY3164530, Anti-MMP-9 Monoclonal Antibody GS-5745, Anti-MUC1 Monoclonal Antibody BTH1704, Anti-MUC16/CD3 Bispecific Antibody REGN4018, Anti-MUC16/CD3 BiTE Antibody REGN4018, Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A, Anti-MUC17/CD3 BiTE Antibody AMG 199, Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062, Anti-myostatin Monoclonal Antibody LY2495655, Anti-NaPi2b Antibody-drug Conjugate XMT-1592, Anti-NaPi2b Monoclonal Antibody XMT-1535, Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E, Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A, Anti-nf-P2X7 Antibody Ointment BIL-010t, Anti-NRP1 Antibody ASP1948, Anti-Nucleolin Aptamer AS1411, Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A, Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso, Anti-OFA Immunotherapeutic BB-MPI-03, Anti-OX40 Agonist Monoclonal Antibody ABBV-368, Anti-OX40 Agonist Monoclonal Antibody BGB-A445, Anti-OX40 Agonist Monoclonal Antibody PF-04518600, Anti-OX40 Antibody BMS 986178, Anti-OX40 Hexavalent Agonist Antibody INBRX-106, Anti-OX40 Monoclonal Antibody GSK3174998, Anti-OX40 Monoclonal Antibody IBI101, Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256, Anti-PD-1 Checkpoint Inhibitor PF-06801591, Anti-PD-1 Fusion Protein AMP-224, Anti-PD-1 Monoclonal Antibody 609A, Anti-PD-1 Monoclonal Antibody AK105, Anti-PD-1 Monoclonal Antibody AMG 404, Anti-PD-1 Monoclonal Antibody BAT1306, Anti-PD-1 Monoclonal Antibody BCD-100, Anti-PD-1 Monoclonal Antibody BI 754091, Anti-PD-1 Monoclonal Antibody CS1003, Anti-PD-1 Monoclonal Antibody F520, Anti-PD-1 Monoclonal Antibody GLS-010, Anti-PD-1 Monoclonal Antibody HLX10, Anti-PD-1 Monoclonal Antibody HX008, Anti-PD-1 Monoclonal Antibody JTX-4014, Anti-PD-1 Monoclonal Antibody LZM009, Anti-PD-1 Monoclonal Antibody MEDI0680, Anti-PD-1 Monoclonal Antibody MGA012, Anti-PD-1 Monoclonal Antibody SCT-I10A, Anti-PD-1 Monoclonal Antibody Sym021, Anti-PD-1 Monoclonal Antibody TSR-042, Anti-PD-1/Anti-CTLA4 DART Protein MGD019, Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315, Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669, Anti-PD-1/Anti-LAG-3 DART Protein MGD013, Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318, Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172, Anti-PD-1/CD47 Infusion Protein HX009, Anti-PD-1/CTLA-4 Bispecific Antibody AK104, Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752, Anti-PD-1/TIM-3 Bispecific Antibody RO7121661, Anti-PD-1/VEGF Bispecific Antibody AK112, Anti-PD-L1 Monoclonal Antibody A167, Anti-PD-L1 Monoclonal Antibody BCD-135, Anti-PD-L1 Monoclonal Antibody BGB-A333, Anti-PD-L1 Monoclonal Antibody CBT-502, Anti-PD-L1 Monoclonal Antibody CK-301, Anti-PD-L1 Monoclonal Antibody CS1001, Anti-PD-L1 Monoclonal Antibody FAZ053, Anti-PD-L1 Monoclonal Antibody GR1405, Anti-PD-L1 Monoclonal Antibody HLX20, Anti-PD-L1 Monoclonal Antibody IMC-001, Anti-PD-L1 Monoclonal Antibody LY3300054, Anti-PD-L1 Monoclonal Antibody MDX-1105, Anti-PD-L1 Monoclonal Antibody MSB2311, Anti-PD-L1 Monoclonal Antibody RC98, Anti-PD-L1 Monoclonal Antibody SHR-1316, Anti-PD-L1 Monoclonal Antibody TG-1501, Anti-PD-L1 Monoclonal Antibody ZKAB001, Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105, Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046, Anti-PD-L1/CD137 Bispecific Antibody MCLA-145, Anti-PD-L1/IL-15 Fusion Protein KD033, Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244, Anti-PD1 Monoclonal Antibody AGEN2034, Anti-PD1/CTLA4 Bispecific Antibody XmAb20717, Anti-PGF Monoclonal Antibody RO5323441, Anti-PKN3 siRNA Atu027, Anti-PLGF Monoclonal Antibody TB-403, Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4, Anti-PRAME Immunotherapeutic GSK2302032A, Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C, Anti-PRL-3 Monoclonal Antibody PRL3-zumab, Anti-prolactin Receptor Antibody LFA102, Anti-PSCA Monoclonal Antibody AGS-1C4D4, Anti-PSMA Monoclonal Antibody MDX1201-A488, Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704, Anti-PSMA Monoclonal Antibody-MMAE Conjugate, Anti-PSMA/CD28 Bispecific Antibody REGN5678, Anti-PSMA/CD3 Bispecific Antibody CCW702, Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081, Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414, Anti-PSMA/PBD ADC MEDI3726, Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020, Anti-PVRIG Monoclonal Antibody COM701, Anti-RANKL Monoclonal Antibody GB-223, Anti-RANKL Monoclonal Antibody JMT103, Anti-Ribonucleoprotein Antibody ATRC-101, Anti-ROR1 ADC VLS-101, Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002, Anti-S15 Monoclonal Antibody NC318, Anti-sCLU Monoclonal Antibody AB-16B5, Anti-SIRPa Monoclonal Antibody CC-95251, Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E, Anti-TAG-72 Monoclonal Antibody scFV CC-49/218, Anti-TF Monoclonal Antibody ALT-836, Anti-TGF-beta Monoclonal Antibody NIS793, Anti-TGF-beta Monoclonal Antibody SAR-439459, Anti-TGF-beta RII Monoclonal Antibody IMC-TR1, Anti-TIGIT Monoclonal Antibody AB154, Anti-TIGIT Monoclonal Antibody BGB-A1217, Anti-TIGIT Monoclonal Antibody BMS-986207, Anti-TIGIT Monoclonal Antibody COM902, Anti-TIGIT Monoclonal Antibody OMP-313M32, Anti-TIGIT Monoclonal Antibody SGN-TGT, Anti-TIM-3 Antibody BMS-986258, Anti-TIM-3 Monoclonal Antibody BGB-A425, Anti-TIM-3 Monoclonal Antibody INCAGN02390, Anti-TIM-3 Monoclonal Antibody MBG453, Anti-TIM-3 Monoclonal Antibody Sym023, Anti-TIM-3 Monoclonal Antibody TSR-022, Anti-TIM3 Monoclonal Antibody LY3321367, Anti-TIM3 Monoclonal Antibody SHR-1702, Anti-Tissue Factor Monoclonal Antibody MORAb-066, Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711, Anti-TROP2 Antibody-drug Conjugate BAT8003, Anti-TROP2 Antibody-drug Conjugate SKB264, Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a, Anti-TWEAK Monoclonal Antibody RG7212, Anti-VEGF Anticalin PRS-050-PEG40, Anti-VEGF Monoclonal Antibody hPV19, Anti-VEGF/ANG2 Nanobody BI 836880, Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T, Anti-VEGFC Monoclonal Antibody VGX-100, Anti-VEGFR2 Monoclonal Antibody HLX06, Anti-VEGFR2 Monoclonal Antibody MSB0254, Anti-VEGFR3 Monoclonal Antibody IMC-3C5, Anti-VISTA Monoclonal Antibody JNJ 61610588, Antiangiogenic Drug Combination TL-118, Antibody-drug Conjugate ABBV-011, Antibody-drug Conjugate ABBV-085, Antibody-drug Conjugate ABBV-155, Antibody-drug Conjugate ABBV-176, Antibody-drug Conjugate ABBV-838, Antibody-drug Conjugate ADC XMT-1536, Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014, Antibody-Drug Conjugate DFRF4539A, Antibody-drug Conjugate MEDI7247, Antibody-drug Conjugate PF-06647263, Antibody-drug Conjugate PF-06664178, Antibody-drug Conjugate SC-002, Antibody-drug Conjugate SC-003, Antibody-drug Conjugate SC-004, Antibody-drug Conjugate SC-005, Antibody-drug Conjugate SC-006, Antibody-drug Conjugate SC-007, Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008, Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV, Antimetabolite FF-10502, Antineoplastic Agent Combination SM-88, Antineoplastic Vaccine, Antineoplastic Vaccine GV-1301, Antineoplaston A10, Antineoplaston AS2-1, Antisense Oligonucleotide GTI-2040, Antisense Oligonucleotide QR-313, Antitumor B Key Active Component-alpha, Antrodia cinnamomea Supplement, Antroquinonol Capsule, Apalutamide, Apatorsen, Apaziquone, APC8015F, APE1/Ref-1 Redox Inhibitor APX3330, Aphidicoline Glycinate, Apilimod Dimesylate Capsule, Apitolisib, Apolizumab, Apomab, Apomine, Apoptosis Inducer BZL101, Apoptosis Inducer GCS-100, Apoptosis Inducer MPC-2130, Apricoxib, Aprinocarsen, Aprutumab, Aprutumab Ixadotin, AR Antagonist BMS-641988, Arabinoxylan Compound MGN3, Aranose, ARC Fusion Protein SL-279252, Archexin, Arcitumomab, Arfolitixorin, Arginase Inhibitor INCB001158, Arginine Butyrate, Arnebia Indigo Jade Pearl Topical Cream, Arsenic Trioxide, Arsenic Trioxide Capsule Formulation ORH 2014, Artemether Sublingual Spray, Artemisinin Dimer, Artesunate, Arugula Seed Powder, Aryl Hydrocarbon Receptor Antagonist BAY2416964, Aryl Hydrocarbon Receptor Inhibitor IK-175, Asaley, Asciminib, Ascrinvacumab, Ashwagandha Root Powder Extract, ASP4132, Aspacytarabine, Asparaginase, Asparaginase Erwinia chrysanthemi, Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10, Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10, Astuprotimut-R, Asulacrine, Asulacrine Isethionate, Asunercept, At 211 Monoclonal Antibody 81C6, Atamestane, Atezolizumab, Atiprimod, Atiprimod Dihydrochloride, Atiprimod Dimaleate, ATM Inhibitor M 3541, ATM Kinase Inhibitor AZD0156, ATM Kinase Inhibitor AZD1390, Atorvastatin Calcium, Atorvastatin Sodium, ATR Inhibitor RP-3500, ATR Kinase Inhibitor BAY1895344, ATR Kinase Inhibitor M1774, ATR Kinase Inhibitor M6620, ATR Kinase Inhibitor VX-803, Atrasentan Hydrochloride, Attenuated Listeria monocytogenes CRS-100, Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001, Attenuated Measles Virus Encoding SCD Transgene TMV-018, Atuveciclib, Audencel, Auranofin, Aurora A Kinase Inhibitor LY3295668, Aurora A Kinase Inhibitor LY3295668 Erbumine, Aurora A Kinase Inhibitor MK5108, Aurora A Kinase Inhibitor TAS-119, Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076, Aurora B Serine/Threonine Kinase Inhibitor TAK-901, Aurora B/C Kinase Inhibitor GSK1070916A, Aurora kinase A/B inhibitor TT-00420, Aurora Kinase Inhibitor AMG 900, Aurora Kinase Inhibitor BI 811283, Aurora Kinase Inhibitor MLN8054, Aurora Kinase Inhibitor PF-03814735, Aurora Kinase Inhibitor SNS-314, Aurora Kinase Inhibitor TTP607, Aurora Kinase/VEGFR2 Inhibitor CYC116, Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707, Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055, Autologous Anti-BCMA CAR T-cells PHE885, Autologous Anti-BCMA CAR-transduced T-cells KITE-585, Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11, Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088, Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053, Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143, Autologous Anti-CD123 CAR-T Cells, Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx, Autologous Anti-CD19 CAR T-cells IM19, Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19, Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19, Autologous Anti-CD19 CAR-CD28 T-cells ET019002, Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01, Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1, Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19, Autologous Anti-CD19 T-cell Receptor T cells ET190L1, Autologous Anti-CD19 TAC-T cells TAC01-CD19, Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells, Autologous Anti-CD19/CD22 CAR T-cells AUTO3, Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014, Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells, Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1, Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s, Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes, Autologous Anti-FLT3 CAR T Cells AMG 553, Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202, Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1, Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100, Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes, Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794, Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes, Autologous Anti-PSMA CAR-T Cells P-PSMA-101, Autologous AXL-targeted CAR T-cells CCT301-38, Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B, Autologous BCMA-targeted CAR T Cells CC-98633, Autologous BCMA-targeted CAR T Cells LCAR-B4822M, Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528, Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F, Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022, Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005, Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006, Autologous CD123-4SCAR-expressing T-cells 4SCAR123, Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1, Autologous CD19-targeted CAR T Cells CC-97540, Autologous CD19-targeted CAR T Cells JWCAR029, Autologous CD19-targeted CAR-T Cells GC007F, Autologous CD19/PD-1 Bispecific CAR-T Cells, Autologous CD20-4SCAR-expressing T-cells 4SCAR20, Autologous CD22-4SCAR-expressing T-cells 4SCAR22, Autologous CD38-4SCAR-expressing T-cells 4SCAR38, Autologous Clonal Neoantigen T Cells ATL001, Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19, Autologous Deep IL-15 Primed T-cells TRQ15-01, Autologous Dendritic Cell Vaccine ACT2001, Autologous Dendritic Cell-based Immunotherapeutic AV0113, Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa, Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells, Autologous Genetically-modified MAGE-A4 C1032 T Cells, Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858, Autologous HPV16 E7-specific HLA-A*02:01-restricted TCR Gene Engineered Lymphocytes KITE-439, Autologous LMP1/LMP2/EBNA1-specific HLA-A02:01/24:02/11:01-restricted TCR-expressing T-lymphocytes YT-E001, Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718, Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR, Autologous Mesenchymal Stem Cells Apceth_101, Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11, Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC, Autologous Multi-lineage Potential Cells, Autologous Nectin-4/FAP-targeted CAR-T Cells, Autologous NKG2D CAR T-cells CYAD-02, Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01, Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine, Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001, Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101, Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601, Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201, Autologous ROR2-targeted CAR T-cells CCT301-59, Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1, Autologous TCR-engineered T-cells IMA201, Autologous TCR-engineered T-cells IMA202, Autologous TCR-engineered T-cells IMA203, Autologous TCRm-expressing T-cells ET140203, Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG, Autologous Tumor Infiltrating Lymphocytes LN-144, Autologous Tumor Infiltrating Lymphocytes LN-145, Autologous Tumor Infiltrating Lymphocytes LN-145-S1, Autologous Tumor Infiltrating Lymphocytes MDA-TIL, Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T, Avadomide, Avadomide Hydrochloride, Avapritinib, Avdoralimab, Avelumab, Aviscumine, Avitinib Maleate, Axalimogene Filolisbac, Axatilimab, Axicabtagene Ciloleucel, Axitinib, AXL Inhibitor DS-1205c, AXL Inhibitor SLC-391, AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M, AXL/ FLT3/VEGFR2 Inhibitor KC1036, Axl/Mer Inhibitor INCB081776, Axl/Mer Inhibitor PF-07265807, Azacitidine, Azapicyl, Azaribine, Azaserine, Azathioprine, Azimexon, Azintuxizumab Vedotin, Aziridinylbenzoquinone RH1, Azotomycin, Azurin:50-77 Cell Penetrating Peptide p28, B-Raf/VEGFR-2 Inhibitor RAF265, Babaodan Capsule, Bacillus Calmette-Guerin Substrain Connaught Live Antigen, Bactobolin, Bafetinib, Balixafortide, Balstilimab, Baltaleucel-T, Banoxantrone, Barasertib, Bardoxolone, Bardoxolone Methyl, Baricitinib, Batabulin, Batabulin Sodium, Batimastat, Bavituximab, Bazedoxifene, Bazlitoran, BC-819 Plasmid/Polyethylenimine Complex, BCG Solution, BCG Tokyo-172 Strain Solution, BCG Vaccine, Bcl-2 Inhibitor APG 2575, Bcl-2 Inhibitor BCL201, Bcl-2 Inhibitor BGB-11417, Bcl-2 Inhibitor LP-108, Bcl-2 Inhibitor S65487, Bcl-Xs Adenovirus Vaccine, BCMA x CD3 T-cell Engaging Antibody CC-93269, BCMA-CD19 Compound CAR T Cells, BCMA/CD3e Tri-specific T-cell Activating Construct HPN217, Bcr-Abl Kinase Inhibitor K0706, Bcr-Abl Kinase Inhibitor PF-114, BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351, Beauvericin, Becatecarin, Belagenpumatucel-L, Belantamab Mafodotin, Belapectin, Belimumab, Belinostat, Belotecan Hydrochloride, Belvarafenib, Belzutifan, Bemarituzumab, Bemcentinib, Bempegaldesleukin, Benaxibine, Bendamustine, Bendamustine Hydrochloride, Bendamustine-containing Nanoparticle-based Formulation RXDX-107, Benzaldehyde Dimethane Sulfonate, Benzoylphenylurea, Berberine Chloride, Bermekimab, Bersanlimab, Berubicin Hydrochloride, Berzosertib, BET Bromodomain Inhibitor ZEN-3694, BET Inhibitor ABBV-744, BET Inhibitor BAY1238097, BET inhibitor BI 894999, BET Inhibitor BMS-986158, BET Inhibitor CC-90010, BET Inhibitor CPI-0610, BET Inhibitor FT-1101, BET Inhibitor GS-5829, BET Inhibitor GSK2820151, BET Inhibitor INCB054329, BET Inhibitor INCB057643, BET Inhibitor RO6870810, BET-bromodomain Inhibitor ODM-207, Beta Alethine, Beta-Carotene, Beta-elemene, Beta-Glucan, Beta-Glucan MM-10-001, Beta-lapachone Prodrug ARQ 761, Beta-Thioguanine Deoxyriboside, Betaglucin Gel, Betulinic Acid, Bevacizumab, Bexarotene, Bexmarilimab, BF-200 Gel Formulation, BH3 Mimetic ABT-737, Bi-functional Alkylating Agent VAL-083, Bicalutamide, Bimiralisib, Binetrakin, Binimetinib, Bintrafusp Alfa, Birabresib, Birinapant, Bis(choline)tetrathiomolybdate, Bisantrene, Bisantrene Hydrochloride, Bisnafide, Bisnafide Dimesylate, Bispecific Antibody 2B1, Bispecific Antibody AGEN1223, Bispecific Antibody AMG 509, Bispecific Antibody GS-1423, Bispecific Antibody MDX-H210, Bispecific Antibody MDX447, Bisthianostat, BiTE Antibody AMG 910, Bivalent BRD4 Inhibitor AZD5153, Bizalimogene Ralaplasmid, Bizelesin, BL22 Immunotoxin, Black Cohosh, Black Raspberry Nectar, Bleomycin, Bleomycin A2, Bleomycin B2, Bleomycin Sulfate, Blinatumomab, Blueberry Powder Supplement, BMI1 Inhibitor PTC596, BMS-184476, BMS-188797, BMS-214662, BMS-275183, Boanmycin Hydrochloride, Bomedemstat, Boronophenylalanine-Fructose Complex, Bortezomib, Bosutinib, Bosutinib Monohydrate, Botanical Agent BEL-X-HG, Botanical Agent LEAC-102, Bovine Cartilage, Bozitinib, BP-Cx1-Platinum Complex BP-C1, BR96-Doxorubicin Immunoconjugate, Brachyury-expressing Yeast Vaccine GI-6301, BRAF Inhibitor, BRAF Inhibitor ARQ 736, BRAF Inhibitor BGB-3245, BRAF Inhibitor PLX8394, BRAF(V600E) Kinase Inhibitor ABM-1310, BRAF(V600E) Kinase Inhibitor RO5212054, BRAF/EGFR Inhibitor BGB-283, BRAFV600/PI3K Inhibitor ASN003, BRD4 Inhibitor PLX2853, BRD4 Inhibitor PLX51107, Breflate, Brentuximab, Brentuximab Vedotin, Brequinar, Brequinar Sodium, Briciclib Sodium, Brigatinib, Brilanestrant, Brimonidine Tartrate Nanoemulsion OCU-300, Brivanib, Brivanib Alaninate, Brivudine, Brivudine Phosphoramidate, Broad-Spectrum Human Papillomavirus Vaccine V505, Broccoli Sprout/Broccoli Seed Extract Supplement, Bromacrylide, Bromebric Acid, Bromocriptine Mesylate, Brontictuzumab, Brostacillin Hydrochloride, Brostallicin, Broxuridine, Bruceanol A, Bruceanol B, Bruceanol C, Bruceanol D, Bruceanol E, Bruceanol F, Bruceanol G, Bruceanol H, Bruceantin, Bryostatin 1, BTK Inhibitor ARQ 531, BTK Inhibitor CT-1530, BTK Inhibitor DTRMWXHS-12, BTK Inhibitor HZ-A-018, BTK Inhibitor ICP-022, BTK Inhibitor LOXO-305, BTK Inhibitor M7583, BTK inhibitor TG-1701, Budigalimab, Budotitane, Bufalin, Buparlisib, Burixafor, Burixafor Hydrobromide, Burosumab, Buserelin, Bushen Culuan Decoction, Bushen-Jianpi Decoction, Busulfan, Buthionine Sulfoximine, BXQ-350 Nanovesicle Formulation, c-Kit Inhibitor PLX9486, c-Met Inhibitor ABN401, c-Met Inhibitor AL2846, c-Met Inhibitor AMG 208, c-Met Inhibitor AMG 337, c-Met Inhibitor GST-HG161, c-Met Inhibitor HS-10241, c-Met Inhibitor JNJ-38877605, c-Met Inhibitor MK2461, c-Met Inhibitor MK8033, c-Met Inhibitor MSC2156119J, C-myb Antisense Oligonucleotide G4460, c-raf Antisense Oligonucleotide ISIS 5132, C-VISA BikDD:Liposome, C/EBP Beta Antagonist ST101, CAB-ROR2-ADC BA3021, Cabazitaxel, Cabiralizumab, Cabozantinib, Cabozantinib S-malate, Cactinomycin, Caffeic Acid Phenethyl Ester, CAIX Inhibitor DTP348, CAIX Inhibitor SLC-0111, Calaspargase Pegol-mknl, Calcitriol, Calcium Release-activated Channel Inhibitor CM4620, Calcium Release-activated Channels Inhibitor RP4010, Calcium Saccharate, Calculus bovis/Moschus/Olibanum/Myrrha Capsule, Calicheamicin Gamma 1I, Camidanlumab Tesirine, Camptothecin, Camptothecin Analogue TLC388, Camptothecin Glycoconjugate BAY 38-3441, Camptothecin Sodium, Camptothecin-20(S)-O-Propionate Hydrate, Camrelizumab, Camsirubicin, Cancell, Cancer Peptide Vaccine S-588410, Canerpaturev, Canertinib Dihydrochloride, Canfosfamide, Canfosfamide Hydrochloride, Cannabidiol, Cantrixil, Cantuzumab Ravtansine, Capecitabine, Capecitabine Rapidly Disintegrating Tablet, Capivasertib, Capmatinib, Captopril, CAR T-Cells AMG 119, Caracemide, Carbendazim, Carbetimer, Carbogen, Carbon C 14-pamiparib, Carboplatin, Carboquone, Carboxyamidotriazole, Carboxyamidotriazole Orotate, Carboxyphenyl Retinamide, Carfilzomib, Caricotamide/Tretazicar, Carlumab, Carmofur, Carmustine, Carmustine Implant, Carmustine in Ethanol, Carmustine Sustained-Release Implant Wafer, Carotuximab, Carubicin, Carubicin Hydrochloride, Carzelesin, Carzinophilin, Cathelicidin LL-37, Cationic Liposome-Encapsulated Paclitaxel, Cationic Peptide Cream Cypep-1, Catumaxomab, CBP/beta-catenin Antagonist PRI-724, CBP/beta-catenin Modulator E7386, CCR2 Antagonist CCX872-B, CCR2 Antagonist PF-04136309, CCR2/CCR5 Antagonist BMS-813160, CCR4 Inhibitor FLX475, CD11b Agonist GB1275, CD123-CD33 Compound CAR T Cells, CD123-specific Targeting Module TM123, CD20-CD19 Compound CAR T Cells, CD28/ICOS Antagonist ALPN-101, CD4-specific Telomerase Peptide Vaccine UCPVax, CD40 Agonist Monoclonal Antibody CP-870;893, CD40 Agonistic Monoclonal Antibody APX005M, CD44 Targeted Agent SPL-108, CD44v6-specific CAR T-cells, CD47 Antagonist ALX148, CD73 Inhibitor AB680, CD73 Inhibitor LY3475070, CD80-Fc Fusion Protein ALPN-202, CD80-Fc Fusion Protein FPT155, CDC7 Inhibitor TAK-931, CDC7 Kinase Inhibitor BMS-863233, CDC7 Kinase Inhibitor LY3143921 Hydrate, CDC7 Kinase Inhibitor NMS-1116354, CDK Inhibitor AT7519, CDK Inhibitor R547, CDK Inhibitor SNS-032, CDK/JAK2/FLT3 Inhibitor TG02 Citrate, CDK1 Inhibitor BEY1107, CDK1/2/4 Inhibitor AG-024322, CDK2 Inhibitor PF-07104091, CDK2/4/6/FLT3 Inhibitor FN-1501, CDK2/5/9 Inhibitor CYC065, CDK4 Inhibitor P1446A-05, CDK4/6 Inhibitor, CDK4/6 Inhibitor BPI-16350, CDK4/6 Inhibitor CS3002, CDK4/6 Inhibitor FCN-437, CDK4/6 Inhibitor G1T38, CDK4/6 Inhibitor HS-10342, CDK4/6 Inhibitor SHR6390, CDK4/6 Inhibitor TQB3616, CDK7 Inhibitor CT7001, CDK7 Inhibitor SY-1365, CDK7 Inhibitor SY-5609, CDK8/19 Inhibitor SEL 120, CDK9 Inhibitor AZD4573, CEA-MUC-1-TRICOM Vaccine CV301, CEA-targeting Agent RG6123, CEBPA-targeting saRNA MTL-CEBPA Liposome, Cedazuridine, Cedazuridine/Azacitidine Combination Agent ASTX030, Cedazuridine/Decitabine Combination Agent ASTX727, Cedefingol, Cediranib, Cediranib Maleate, Celecoxib, Cell Cycle Checkpoint/DNA Repair Antagonist IC83, Cemadotin, Cemadotin Hydrochloride, Cemiplimab, Cenersen, Cenisertib, CENP-E Inhibitor GSK-923295, Ceralasertib, Ceramide Nanoliposome, Cerdulatinib, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480, Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282, Cereblon Modulator CC-90009, Cergutuzumab Amunaleukin, Ceritinib, Cesalin, cEt KRAS Antisense Oligonucleotide AZD4785, Cetrelimab, Cetuximab, Cetuximab Sarotalocan, Cetuximab-IR700 Conjugate RM-1929, Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY), Cevipabulin, Cevipabulin Fumarate, Cevipabulin Succinate, Cevostamab, cFMS Tyrosine Kinase Inhibitor ARRY-382, Chaparrin, Chaparrinone, Checkpoint Kinase Inhibitor AZD7762, Checkpoint Kinase Inhibitor XL844, Chemotherapy, Chiauranib, Chimeric Monoclonal Antibody 81C6, ChiNing Decoction, Chk1 Inhibitor CCT245737, Chk1 Inhibitor GDC-0425, Chk1 Inhibitor GDC-0575, CHK1 Inhibitor MK-8776, CHK1 Inhibitor PF-477736, Chlorambucil, Chlorodihydropyrimidine, Chloroquine, Chloroquinoxaline Sulfonamide, Chlorotoxin, Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes, Chlorozotocin, Choline Kinase Alpha Inhibitor TCD-717, CHP-NY-ESO-1 Peptide Vaccine IMF-001, Chromomycin A3, Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement, Cibisatamab, Ciclopirox Prodrug CPX-POM, Cidan Herbal Capsule, Ciforadenant, Cilengitide, Ciltacabtagene Autoleucel, Cimetidine, Cinacalcet Hydrochloride, Cinobufagin, Cinobufotalin, Cinrebafusp Alfa, Cintirorgon, Cintredekin Besudotox, Cirmtuzumab, cis-Urocanic Acid, Cisplatin, Cisplatin Liposomal, Cisplatin-E Therapeutic Implant, Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6, Citarinostat, Citatuzumab Bogatox, Cixutumumab, CK1alpha/CDK7/CDK9 Inhibitor BTX-A51, CK2-targeting Synthetic Peptide CIGB-300, CL 246738, Cladribine, Clanfenur, Clarithromycin, Class 1/4 Histone Deacetylase Inhibitor OKI-179, Clinical Trial, Clinical Trial Agent, Clioquinol, Clivatuzumab, Clodronate Disodium, Clodronic Acid, Clofarabine, Clomesone, Clomiphene, Clomiphene Citrate, Clostridium Novyi-NT Spores, Cobimetinib, Cobolimab, Cobomarsen, Codrituzumab, Coenzyme Q10, Cofetuzumab Pelidotin, Colchicine-Site Binding Agent ABT-751, Cold Contaminant-free Iobenguane I-131, Colloidal Gold-Bound Tumor Necrosis Factor, Colorectal Cancer Peptide Vaccine PolyPEPI1018, Colorectal Tumor-Associated Peptides Vaccine IMA910, Coltuximab Ravtansine, Combretastatin, Combretastatin A-1, Combretastatin A1 Diphosphate, Commensal Bacterial Strain Formulation VE800, Compound Kushen Injection, Conatumumab, Conbercept, Concentrated Lingzhi Mushroom Extract, Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011, Copanlisib, Copanlisib Hydrochloride, Copper Cu 64-ATSM, Copper Cu 67 Tyr3-octreotate, Copper Gluconate, Cord Blood Derived CAR T-Cells, Cord Blood-derived Expanded Natural Killer Cells PNK-007, Cordycepin, Cordycepin Triphosphate, Coriolus Versicolor Extract, Corticorelin Acetate, Cortisone Acetate, Cosibelimab, Cositecan, Coxsackievirus A21, Coxsackievirus V937, CpG Oligodeoxynucleotide GNKG168, Crenolanib, Crenolanib Besylate, Crizotinib, Crolibulin, Cryptophycin, Cryptophycin 52, Crystalline Genistein Formulation AXP107-11, CSF-1R Inhibitor BLZ945, CSF1R Inhibitor ABSK021, CSF1R Inhibitor DCC-3014, CSF1R Inhibitor PLX73086, CT2584 HMS, CTLA-4-directed Probody BMS-986249, Curcumin, Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110, Cusatuzumab, Custirsen Sodium, CXC Chemokine Receptor 2 Antagonist AZD5069, CXCR1/2 Inhibitor SX-682, CXCR2 Antagonist QBM076, CXCR4 Antagonist BL-8040, CXCR4 Antagonist USL311, CXCR4 Inhibitor Q-122, CXCR4 Peptide Antagonist LY2510924, CXCR4/E-selectin Antagonist GMI-1359, Cyclin-dependent Kinase 8/19 Inhibitor BCD 115, Cyclin-dependent Kinase Inhibitor PF-06873600, Cyclodextrin-Based Polymer-Camptothecin CRLX101, Cyclodisone, Cycloleucine, Cyclopentenyl Cytosine, Cyclophosphamide, Cyclophosphamide Anhydrous, Cyclosporine, CYL-02 Plasmid DNA, CYP11A1 inhibitor ODM-208, CYP11A1 Inhibitor ODM-209, CYP17 Inhibitor CFG920, CYP17 Lyase Inhibitor ASN001, CYP17/Androgen Receptor Inhibitor ODM 204, CYP17/CYP11B2 Inhibitor LAE001, Cyproterone, Cyproterone Acetate, Cytarabine, Cytarabine Monophosphate Prodrug MB07133, Cytarabine-asparagine Prodrug BST-236, Cytidine Analog RX-3117, Cytochlor, Cytokine-based Biologic Agent IRX-2, D-methionine Formulation MRX-1024, DAB389 Epidermal Growth Factor, Dabrafenib, Dabrafenib Mesylate, Dacarbazine, Dacetuzumab, DACH Polymer Platinate AP5346, DACH-Platin Micelle NC-4016, Daclizumab, Dacomitinib, Dacplatinum, Dactinomycin, Dactolisib, Dactolisib Tosylate, Dalantercept, Dalotuzumab, Daniquidone, Danusertib, Danvatirsen, Daporinad, Daratumumab, Daratumumab and Hyaluronidase-fihj, Daratumumab/rHuPH20, Darinaparsin, Darleukin, Darolutamide, Daromun, Dasatinib, Daunorubicin, Daunorubicin Citrate, Daunorubicin Hydrochloride, DEC-205/NY-ESO-1 Fusion Protein CDX-1401, Decitabine, Decitabine and Cedazuridine, Defactinib, Defactinib Hydrochloride, Deferoxamine, Deferoxamine Mesylate, Degarelix, Degarelix Acetate, Delanzomib, Delolimogene Mupadenorepvec, Demcizumab, Demecolcine, Demplatin Pegraglumer, Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466, Dendritic Cell Vaccine, Dendritic Cell-Autologous Lung Tumor Vaccine, Dendritic Cell-targeting Lentiviral Vector ID-LV305, Denenicokin, Dengue Virus Adjuvant PV-001-DV, Denibulin, Denibulin Hydrochloride, Denileukin Diftitox, Denintuzumab Mafodotin, Denosumab, Deoxycytidine Analogue TAS-109, Deoxycytidine Analogue TAS-109 Hydrochloride, Depatuxizumab, Depatuxizumab Mafodotin, Derazantinib, Deslorelin, Deslorelin Acetate, Detirelix, Detorubicin, Deuteporfin, Deuterated Enzalutamide, Devimistat, Dexamethason, Dexamethasone, Dexamethasone Phosphate, Dexamethasone Sodium Phosphate, Dexanabinol, Dexrazoxane, Dexrazoxane Hydrochloride, Dezaguanine, Dezaguanine Mesylate, Dezapelisib, DHA-Paclitaxel, DHEA Mustard, DI-Leu16-IL2 Immunocytokine, Dianhydrogalactitol, Diarylsulfonylurea Compound ILX-295501, Diazepinomicin, Diaziquone, Diazooxonorleucine, Dibrospidium Chloride, Dichloroallyl Lawsone, Dicycloplatin, Didox, Dienogest, Diethylnorspermine, Digitoxin, Digoxin, Dihydro-5-Azacytidine, Dihydrolenperone, Dihydroorotate Dehydrogenase Inhibitor AG-636, Dihydroorotate Dehydrogenase Inhibitor BAY2402234, Diindolylmethane, Dilpacimab, Dimethylmyleran, Dinaciclib, Dinutuximab, Dioscorea nipponica Makino Extract DNE3, Diphencyprone, Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777, Ditiocarb, DKK1-Neutralizing Monoclonal Antibody DKN-01, DM-CHOC-PEN, DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015, DNA Interference Oligonucleotide PNT2258, DNA Minor Groove Binding Agent SG2000, DNA Plasmid Encoding Interleukin-12 INO-9012, DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151, DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457, DNA Vaccine VB10.16, DNA-dependent Protein Kinase Inhibitor VX-984, DNA-PK inhibitor AZD7648, DNA-PK/PI3K-delta Inhibitor BR101801, DNA-PK/TOR Kinase Inhibitor CC-115, DNMT1 Inhibitor NTX-301, DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98, Docetaxel, Docetaxel Anhydrous, Docetaxel Emulsion ANX-514, Docetaxel Formulation CKD-810, Docetaxel Lipid Microspheres, Docetaxel Nanoparticle CPC634, Docetaxel Polymeric Micelles, Docetaxel-loaded Nanopharmaceutical CRLX301, Docetaxel-PNP, Docetaxel/Ritonavir, Dociparstat sodium, Dolastatin 10, Dolastatin 15, Domatinostat, Donafenib, Dopamine-Somatostatin Chimeric Molecule BIM-23A760, Dostarlimab, Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703, Dovitinib, Dovitinib Lactate, Doxazosin, Doxercalciferol, Doxifluridine, Doxorubicin, Doxorubicin Hydrochloride, Doxorubicin Prodrug L-377;202, Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370, Doxorubicin-Eluting Beads, Doxorubicin-HPMA Conjugate, Doxorubicin-loaded EGFR-targeting Nanocells, Doxorubicin-Magnetic Targeted Carrier Complex, DPT/BCG/Measles/Serratia/Pneumococcus Vaccine, DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine, DPX-E7 HPV Vaccine, DR5 HexaBody Agonist GEN1029, DR5-targeting Tetrameric Nanobody Agonist TAS266, Dromostanolone Propionate, Drozitumab, DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555, Dual IGF-1R/InsR Inhibitor BMS-754807, Dual Variable Domain Immunoglobulin ABT-165, Dual-affinity B7-H3/CD3-targeted Protein MGD009, Dubermatinib, Duborimycin, Dulanermin, Duligotuzumab, Dupilumab, Durvalumab, Dusigitumab, dUTPase/DPD Inhibitor TAS-114, Duvelisib, Duvortuxizumab, Dynemicin, Dynemicin A, E2F1 Pathway Activator ARQ 171, EBNA-1 inhibitor VK-2019, Echinomycin, Ecromeximab, Edatrexate, Edelfosine, Edicotinib, Edodekin alfa, Edotecarin, Edrecolomab, EED Inhibitor MAK683, Efatutazone, Efatutazone Dihydrochloride, Efizonerimod, Eflornithine, Eflornithine Hydrochloride, Eftilagimod Alpha, Eftozanermin Alfa, Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205, Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621, EGb761, EGFR Antagonist Hemay022, EGFR Antisense DNA BB-401, EGFR Inhibitor AZD3759, EGFR Inhibitor BIBX 1382, EGFR Inhibitor DBPR112, EGFR Inhibitor PD-168393, EGFR Inhibitor TY-9591, EGFR Mutant-selective Inhibitor TQB3804, EGFR Mutant-specific Inhibitor BPI-7711, EGFR Mutant-specific Inhibitor CK-101, EGFR Mutant-specific Inhibitor D-0316, EGFR Mutant-specific Inhibitor ZN-e4, EGFR T790M Antagonist BPI-15086, EGFR T790M Inhibitor HS-10296, EGFR/EGFRvIII Inhibitor WSD0922-FU, EGFR/FLT3/Abl Inhibitor SKLB1028, EGFR/HER1/HER2 Inhibitor PKI166, EGFR/HER2 Inhibitor AP32788, EGFR/HER2 Inhibitor AV-412, EGFR/HER2 Inhibitor DZD9008, EGFR/HER2 Kinase Inhibitor TAK-285, EGFR/TGFb Fusion Monoclonal Antibody BCA101, EGFR/VEGFR/RET Inhibitor HA121-28, Eicosapentaenoic Acid, eIF4E Antisense Oligonucleotide ISIS 183750, Elacestrant, Elacytarabine, Elagolix, Elbasvir/Grazoprevir, Elesclomol, Elesclomol Sodium, Elgemtumab, Elinafide, Elisidepsin, Elliptinium, Elliptinium Acetate, Elmustine, Elotuzumab, Elpamotide, Elsamitrucin, Eltanexor, Emactuzumab, Emapalumab, Emepepimut-S, Emibetuzumab, Emitefur, Emofolin Sodium, Empesertib, Enadenotucirev, Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A, Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641, Enasidenib, Enasidenib Mesylate, Enavatuzumab, Encapsulated Rapamycin, Encelimab, Enclomiphene, Enclomiphene Citrate, Encorafenib, Endothelin B Receptor Blocker ENB 003, Endothelin Receptor Type A Antagonist YM598, Enfortumab Vedotin, Engineered Human Umbilical Vein Endothelial Cells AB-205, Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240, Engineered Toxin Body Targeting CD38 TAK-169, Engineered Toxin Body Targeting HER2 MT-5111, Eniluracil/5-FU Combination Tablet, Enloplatin, Enoblituzumab, Enobosarm, Enoticumab, Enpromate, Ensartinib, Ensituximab, Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride, Enterococcus gallinarum Strain MRx0518, Entinostat, Entolimod, Entospletinib, Entrectinib, Envafolimab, Enzalutamide, Enzastaurin, Enzastaurin Hydrochloride, EP2/EP4 Antagonist TPST-1495, EP4 Antagonist INV-1120, EP4 Antagonist ONO-4578, Epacadostat, Epcoritamab, EphA2-targeting Bicycle Toxin Conjugate BT5528, Epipodophyllotoxin Analog GL331, Epipropidine, Epirubicin, Epirubicin Hydrochloride, Epitinib Succinate, Epitiostanol, Epothilone Analog UTD1, Epothilone KOS-1584, Epratuzumab, Epratuzumab-cys-tesirine, ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471, ERa36 Modulator Icaritin, Erastin Analogue PRLX 93936, Erbulozole, Erdafitinib, Eribulin, Eribulin Mesylate, ERK 1/2 Inhibitor ASTX029, ERK Inhibitor CC-90003, ERK Inhibitor GDC-0994, ERK Inhibitor LTT462, ERK Inhibitor MK-8353, ERK1/2 Inhibitor ASN007, ERK1/2 Inhibitor HH2710, ERK1/2 Inhibitor JSI-1187, ERK1/2 Inhibitor KO-947, ERK1/2 Inhibitor LY3214996, Erlotinib, Erlotinib Hydrochloride, Ertumaxomab, Erythrocyte-encapsulated L-asparaginase Suspension, Esorubicin, Esorubicin Hydrochloride, Esperamicin A1, Essiac, Esterified Estrogens, Estradiol Valerate, Estramustine, Estramustine Phosphate Sodium, Estrogen Receptor Agonist GTx-758, Estrogens; Conjugated, Etalocib, Etanercept, Etanidazole, Etaracizumab, Etarotene, Ethaselen, Ethinyl Estradiol, Ethyleneimine, Ethylnitrosourea, Etidronate-Cytarabine Conjugate MBC-11, Etigilimab, Etirinotecan Pegol, Etoglucid, Etoposide, Etoposide Phosphate, Etoposide Toniribate, Etoprine, Etoricoxib, Ets-family Transcription Factor Inhibitor TK216, Everolimus, Everolimus Tablets for Oral Suspension, Evofosfamide, Ex Vivo-expanded Autologous T Cells IMA101, Exatecan Mesylate, Exatecan Mesylate Anhydrous, Exemestane, Exicorilant, Exisulind, Extended Release Flucytosine, Extended Release Metformin Hydrochloride, Extended-release Onapristone, Ezabenlimab, EZH1/2 Inhibitor DS-3201, EZH1/2 Inhibitor HH2853, EZH2 inhibitor CPI-0209, EZH2 Inhibitor CPI-1205, EZH2 Inhibitor PF-06821497, EZH2 Inhibitor SHR2554, F16-IL2 Fusion Protein, FACT Complex-targeting Curaxin CBL0137, Factor VII-targeting Immunoconjugate Protein ICON-1, Factor VIIa Inhibitor PCI-27483, Fadraciclib, Fadrozole Hydrochloride, FAK Inhibitor GSK2256098, FAK Inhibitor PF-00562271, FAK Inhibitor VS-4718, FAK/ALK/ROS1 Inhibitor APG-2449, Falimarev, Famitinib, FAP/4-1BB-targeting DARPin MP0310, FAP/4-1BB-targeting Fusion Protein RO7122290, Farletuzumab, Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123, Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells, Fas Receptor Agonist APO010, Fascin Inhibitor NP-G2-044, FASN Inhibitor TVB-2640, Favezelimab, Fazarabine, Fc-engineered Anti-CD40 Agonist Antibody 2141-V11, Febuxostat, Fedratinib, Fedratinib Hydrochloride, Feladilimab, Felzartamab, Fenebrutinib, Fenretinide, Fenretinide Lipid Matrix, Fenretinide Phospholipid Suspension ST-001, FGF Receptor Antagonist HGS1036, FGF/FGFR Pathway Inhibitor E7090, FGFR Inhibitor ASP5878, FGFR Inhibitor AZD4547, FGFR Inhibitor CPL304110, FGFR Inhibitor Debio 1347, FGFR Inhibitor TAS-120, FGFR/CSF-1R Inhibitor 3D185, FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999, FGFR1/2/3 Inhibitor HMPL-453, FGFR2 Inhibitor RLY-4008, FGFR4 Antagonist INCB062079, FGFR4 Inhibitor BLU 9931, FGFR4 Inhibitor FGF401, FGFR4 Inhibitor H3B-6527, FGFR4 Inhibitor ICP-105, Fianlimab, Fibromun, Ficlatuzumab, Figitumumab, Filanesib, Filgotinib, Filgrastim, Fimaporfin A, Fimepinostat, Firtecan Pegol, Fisogatinib, Flanvotumab, Flotetuzumab, Floxuridine, FLT3 Inhibitor FF-10101 Succinate, FLT3 Inhibitor HM43239, FLT3 Inhibitor SKI-G-801, Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01, FLT3 Tyrosine Kinase Inhibitor TTT-3002, FLT3/ABL/Aurora Kinase Inhibitor KW-2449, FLT3/CDK4/6 Inhibitor FLX925, FLT3/FGFR Dual Kinase Inhibitor MAX-40279, FLT3/KIT Kinase Inhibitor AKN-028, FLT3/KIT/CSF1R Inhibitor NMS-03592088, Flt3/MerTK Inhibitor MRX-2843, Fludarabine, Fludarabine Phosphate, Flumatinib, Flumatinib Mesylate, Fluorine F 18 Ara-G, Fluorodopan, Fluorouracil, Fluorouracil Implant, Fluorouracil-E Therapeutic Implant, Fluoxymesterone, Flutamide, Fluvastatin, Fluvastatin Sodium, Fluzoparib, FMS Inhibitor JNJ-40346527, Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate, Folate Receptor Targeted Epothilone BMS753493, Folate Receptor-Targeted Tubulysin Conjugate EC1456, Folate Receptor-Targeted Vinca Alkaloid EC0489, Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225, Folate-FITC, Folic Acid, Folitixorin, Foretinib, Foritinib Succinate, Formestane, Forodesine Hydrochloride, Fosaprepitant, Fosbretabulin, Fosbretabulin Disodium, Fosbretabulin Tromethamine, Fosgemcitabine Palabenamide, Fosifloxuridine Nafalbenamide, Foslinanib, Foslinanib Disodium, Fosquidone, Fostriecin, Fotemustine, Fotretamine, FPV Vaccine CV301, FPV-Brachyury-TRICOM Vaccine, Fresolimumab, Fruquintinib, Fulvestrant, Fumagillin-Derived Polymer Conjugate XMT-1107, Fursultiamine, Futibatinib, Futuximab, Futuximab/Modotuximab Mixture, G Protein-coupled Estrogen Receptor Agonist LNS8801, G-Quadruplex Stabilizer BMVC, Galamustine, Galarubicin, Galectin Inhibitor GR-MD-02, Galectin-1 Inhibitor OTX008, Galeterone, Galiximab, Gallium-based Bone Resorption Inhibitor AP-002, Galocitabine, Galunisertib, Gamboge Resin Extract TSB-9-W1, Gamma-delta Tocotrienol, Gamma-Secretase Inhibitor LY3039478, Gamma-Secretase Inhibitor RO4929097, Gandotinib, Ganetespib, Ganglioside GD2, Ganglioside GM2, Ganitumab, Ganoderma lucidum Spores Powder Capsule, Garlic, Gastrin Immunotoxin, Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360, Gataparsen Sodium, Gatipotuzumab, GBM Antigens and Alloantigens Immunotherapeutic Vaccine, Gedatolisib, Gefitinib, Geldanamycin, Gelonin, Gemcitabine, Gemcitabine Elaidate, Gemcitabine Hydrochloride, Gemcitabine Hydrochloride Emulsion, Gemcitabine Prodrug LY2334737, Gemcitabine-Phosphoramidate Hydrochloride NUC-1031, Gemcitabine-Releasing Intravesical System, Gemtuzumab Ozogamicin, Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum, Genistein, Gentuximab, Geranylgeranyltransferase I Inhibitor, GI-4000 Vaccine, Giloralimab, Gilteritinib, Gilteritinib Fumarate, Gimatecan, Gimeracil, Ginsenoside Rg3 Capsule, Giredestrant, Girentuximab, Girodazole, GITR Agonist MEDI1873, Givinostat, Glasdegib, Glasdegib Maleate, Glaucarubolone, Glecaprevir/Pibrentasvir, Glembatumumab Vedotin, Glesatinib, Glioblastoma Cancer Vaccine ERC1671, Glioblastoma Multiforme Multipeptide Vaccine IMA950, Glioma Lysate Vaccine GBM6-AD, Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701, Globo H-DT Vaccine OBI-833, Glofitamab, Glucarpidase, Glucocorticoid Receptor Antagonist ORIC-101, Glufosfamide, Glumetinib, Glutaminase Inhibitor CB-839, Glutaminase Inhibitor CB-839 Hydrochloride, Glutaminase Inhibitor IPN60090, Glutamine Antagonist DRP-104, Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101, Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01, Glycooptimized Trastuzumab-GEX, GM-CSF-encoding Oncolytic Adenovirus CGTG-102, Gold Sodium Thiomalate, Golnerminogene Pradenovec, Golotimod, Golvatinib, Gonadotropin-releasing Hormone Analog, Goserelin, Goserelin Acetate, Goserelin Acetate Extended-release Microspheres LY01005, Gossypol, Gossypol Acetic Acid, Grapiprant, Green Tea Extract-based Antioxidant Supplement, GS/pan-Notch Inhibitor AL101, GS/pan-Notch Inhibitor BMS-986115, GSK-3 Inhibitor 9-ING-41, GSK-3 Inhibitor LY2090314, Guadecitabine, Guanabenz Acetate, Guselkumab, Gusperimus Trihydrochloride, Gutolactone, H-ras Antisense Oligodeoxynucleotide ISIS 2503, H1299 Tumor Cell Lysate Vaccine, HAAH Lambda phage Vaccine SNS-301, Hafnium Oxide-containing Nanoparticles NBTXR3, Halichondrin Analogue E7130, Halichondrin B, Halofuginone, Halofuginone Hydrobromide, HCV DNA Vaccine INO-8000, HDAC Class I/IIb Inhibitor HG146, HDAC Inhibitor AR-42, HDAC inhibitor CG200745, HDAC Inhibitor CHR-2845, HDAC Inhibitor CKD-581, HDAC Inhibitor CXD101, HDAC Inhibitor MPT0E028, HDAC Inhibitor OBP-801, HDAC/EGFR/HER2 Inhibitor CUDC-101, HDAC6 Inhibitor KA2507, HDAC8 Inhibitor NBM-BMX, HDM2 Inhibitor HDM201, HDM2 Inhibitor MK-8242, Hedgehog Inhibitor IPI-609, Hematoporphyrin Derivative, Hemiasterlin Analog E7974, Henatinib Maleate, Heparan Sulfate Glycosaminoglycan Mimetic M402, Heparin Derivative SST0001, HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131, HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901, HER2 Inhibitor CP-724;714, HER2 Inhibitor DZD1516, HER2 Inhibitor TAS0728, HER2 Tri-specific Natural Killer Cell Engager DF1001, HER2-directed TLR8 Agonist SBT6050, HER2-targeted DARPin MP0274, HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302, HER2-targeting Antibody Fc Fragment FS102, Herba Scutellaria Barbata, Herbimycin, Heterodimeric Interleukin-15, Hexamethylene Bisacetamide, Hexaminolevulinate, Hexylresorcinol, HIF-1alpha Inhibitor PX-478, HIF-2alpha Inhibitor PT2385, HIF-2alpha Inhibitor PT2977, HIF2a RNAi ARO-HIF2, Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126, Histrelin Acetate, HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001, HLA-A*2402-Restricted Multipeptide Vaccine S-488410, HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201, HM2/MMAE Antibody-Drug Conjugate ALT-P7, Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine, Holmium Ho 166 Poly(L-Lactic Acid) Microspheres, Hormone Therapy, HPPH, HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202, HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c, HPV DNA Plasmids Therapeutic Vaccine VGX-3100, HPV E6/E7 DNA Vaccine GX-188E, HPV E6/E7-encoding Arenavirus Vaccine HB-201, HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C, HPV-16 E6 Peptides Vaccine/Candida albicans Extract, HPV-6-targeting Immunotherapeutic Vaccine INO-3106, HPV16 E7-specific HLA-A*02:01-restricted IgG1-Fc Fusion Protein CUE-101, HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN, HPV6/11-targeted DNA Plasmid Vaccine INO-3107, Hsp90 Antagonist KW-2478, Hsp90 Inhibitor AB-010, Hsp90 Inhibitor BIIB021, Hsp90 Inhibitor BIIB028, Hsp90 Inhibitor Debio 0932, Hsp90 Inhibitor DS-2248, Hsp90 Inhibitor HSP990, Hsp90 Inhibitor MPC-3100, Hsp90 Inhibitor PU-H71, Hsp90 Inhibitor SNX-5422 Mesylate, Hsp90 Inhibitor SNX-5542 Mesylate, Hsp90 Inhibitor TQB3474, Hsp90 Inhibitor XL888, Hsp90-targeted Photosensitizer HS-201, HSP90-targeted SN-38 Conjugate PEN-866, HSP90alpha/beta Inhibitor TAS-116, hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301, hTERT Vaccine V934/V935, hTERT-encoding DNA Vaccine INVAC-1, Hu14.18-IL2 Fusion Protein EMD 273063, HuaChanSu, Huaier Extract Granule, Huang Lian, huBC1-huIL12 Fusion Protein AS1409, Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736, Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104, Human MOAB LICO 28a32, Human Monoclonal Antibody 216, Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307, Human Papillomavirus 16 E7 Peptide/Padre 965.10, Hyaluronidase-zzxf/Pertuzumab/Trastuzumab, Hycanthone, Hydralazine Hydrochloride, Hydrocortisone Sodium Succinate, Hydroxychloroquine, Hydroxyprogesterone Caproate, Hydroxytyrosol, Hydroxyurea, Hypericin, Hypoxia-activated Prodrug TH-4000, I 131 Antiferritin Immunoglobulin, I 131 Monoclonal Antibody A33, I 131 Monoclonal Antibody CC49, I 131 Monoclonal Antibody F19, I 131 Monoclonal Antibody Lym-1, Iadademstat, Ianalumab, IAP Inhibitor APG-1387, IAP Inhibitor AT-406, IAP Inhibitor HGS1029, Ibandronate Sodium, Iberdomide, Iboctadekin, Ibritumomab Tiuxetan, Ibrutinib, Icotinib Hydrochloride, Icrucumab, ICT-121 Dendritic Cell Vaccine, Idarubicin, Idarubicin Hydrochloride, Idarubicin-Eluting Beads, Idasanutlin, Idecabtagene Vicleucel, Idelalisib, Idetrexed, IDH1 Mutant Inhibitor LY3410738, IDH1(R132) Inhibitor IDH305, IDH1R132H-Specific Peptide Vaccine PEPIDH1M, Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020, IDO Peptide Vaccine IO102, IDO-1 Inhibitor LY3381916, IDO/TDO Inhibitor HTI-1090, IDO/TDO Inhibitor LY-01013, IDO1 Inhibitor KHK2455, IDO1 Inhibitor MK-7162, IDO1 Inhibitor PF-06840003, IDO1/TDO2 Inhibitor DN1406131, IDO1/TDO2 Inhibitor M4112, Idronoxil, Idronoxil Suppository NOX66, Ieramilimab, Ifabotuzumab, Ifetroban, Ifosfamide, IGF-1R Inhibitor, IGF-1R Inhibitor PL225B, IGF-1R/IR Inhibitor KW-2450, IGF-methotrexate Conjugate, IL-10 Immunomodulator MK-1966, IL-12-expressing HSV-1 NSC 733972, IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051, IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000, IL-2 Recombinant Fusion Protein ALT-801, IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1, IL4-Pseudomonas Exotoxin Fusion Protein MDNA55, Ilginatinib, Ilixadencel, Iloprost, Ilorasertib, Imalumab, Imaradenant, Imatinib, Imatinib Mesylate, Imetelstat, Imetelstat Sodium, Imexon, Imgatuzumab, Imidazole Mustard, Imidazole-Pyrazole, Imifoplatin, Imipramine Blue, Imiquimod, Immediate-release Onapristone, Immediate-release Tablet Afuresertib, Immune Checkpoint Inhibitor ASP8374, Immunoconjugate RO5479599, Immunocytokine NHS-IL12, Immunocytokine NHS-IL2-LT, Immunomodulator LAM-003, Immunomodulator OHR/AVR118, Immunomodulatory Agent CC-11006, Immunomodulatory Oligonucleotide HYB2055, Immunotherapeutic Combination Product CMB305, Immunotherapeutic GSK1572932A, Immunotherapy Regimen MKC-1106-MT, Immunotoxin CMD-193, IMT-1012 Immunotherapeutic Vaccine, Inactivated Oncolytic Virus Particle GEN0101, Inalimarev, Incyclinide, Indatuximab Ravtansine, Indibulin, Indicine-N-Oxide, Indisulam, Individualized MVA-based Vaccine TG4050, Indocyanine Green-labeled Polymeric Micelles ONM-100, Indole-3-Carbinol, Indomethacin, Indoximod, Indoximod Prodrug NLG802, Indusatumab Vedotin, Inebilizumab, Inecalcitol, Infigratinib, Infigratinib Mesylate, Infliximab, Ingenol Mebutate, Ingenol Mebutate Gel, Iniparib, iNKT Cell Agonist ABX196, Innate Immunostimulator rBBX-01, INO-1001, Inodiftagene Vixteplasmid, iNOS Dimerization Inhibitor ASP9853, Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01, Inosine Monophosphate Dehydrogenase Inhibitor AVN944, Inositol, Inotuzumab Ozogamicin, Inproquone, Integrin alpha-2 Inhibitor E7820, Integrin Receptor Antagonist GLPG0187, Interferon, Interferon Alfa-2B, Interferon Alfa-N1, Interferon Alfa-N3, Interferon Alfacon-1, Interferon Beta-1A, Interferon Gamma-1b, Interferon-gamma-expressing Adenovirus Vaccine ASN-002, Interleukin Therapy, Interleukin-12-Fc Fusion Protein DF6002, Interleukin-15 Agonist Fusion Protein SHR1501, Interleukin-15 Fusion Protein BJ-001, Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306, Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101, Interleukin-2 Liposome, Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230, Intetumumab, Intiquinatine, Intoplicine, Inulin, Iobenguane I-131, Iodine I 124 Monoclonal Antibody A33, Iodine I 124 Monoclonal Antibody M5A, Iodine I 125-Anti-EGFR-425 Monoclonal Antibody, Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP, Iodine I 131 Apamistamab, Iodine I 131 Derlotuximab Biotin, Iodine I 131 Ethiodized Oil, Iodine I 131 IPA, Iodine I 131 MIP-1095, Iodine I 131 Monoclonal Antibody 81C6, Iodine I 131 Monoclonal Antibody BC8, Iodine I 131 Monoclonal Antibody CC49-deltaCH2, Iodine I 131 Monoclonal Antibody F16SIP, Iodine I 131 Monoclonal Antibody G-250, Iodine I 131 Monoclonal Antibody muJ591, Iodine I 131 Omburtamab, Iodine I 131 Rituximab, Iodine I 131 Tenatumomab, Iodine I 131 TM-601, Iodine I 131 Tositumomab, Iodine I-131, Ioflubenzamide I-131, Ionomycin, Ipafricept, Ipatasertib, Ipilimumab, Ipomeanol, Iproplatin, iPSC-derived CD16-expressing Natural Killer Cells FT516, iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596, iPSC-derived Natural Killer Cells FT500, IRAK4 Inhibitor CA-4948, Iratumumab, Iridium Ir 192, Irinotecan, Irinotecan Hydrochloride, Irinotecan Sucrosofate, Irinotecan-Eluting Beads, Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet, Irofulven, Iroplact, Irosustat, Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130, Isatuximab, Iso-fludelone, Isobrucein B, Isocoumarin NM-3, Isotretinoin, Ispinesib, Ispinesib Mesylate, ISS 1018 CpG Oligodeoxynucleotide, Istiratumab, Itacitinib, Itacitinib Adipate, ITK Inhibitor CPI-818, Itraconazole, Itraconazole Dispersion In Polymer Matrix, Ivaltinostat, Ivosidenib, Ivuxolimab, Ixabepilone, Ixazomib, Ixazomib Citrate, JAK Inhibitor, JAK Inhibitor INCB047986, JAK1 Inhibitor AZD4205, JAK1 Inhibitor INCB052793, JAK2 Inhibitor AZD1480, JAK2 Inhibitor BMS-911543, JAK2 Inhibitor XL019, JAK2/Src Inhibitor NS-018, Jin Fu Kang, JNK Inhibitor CC-401, Kanglaite, Kanitinib, Ketoconazole, Ketotrexate, KRAS G12C Inhibitor GDC-6036, KRAS G12C Inhibitor LY3499446, KRAS G12C Inhibitor MRTX849, KRAS Mutant-targeting AMG 510, KRAS-MAPK Signaling Pathway Inhibitor JAB-3312, KRASG12C Inhibitor JNJ-74699157, KRN5500, KSP Inhibitor AZD4877, KSP Inhibitor SB-743921, Kunecatechins Ointment, L-Gossypol, L-methylfolate, Labetuzumab Govitecan, Lactoferrin-derived Lytic Peptide LTX-315, Lacutamab, Ladiratuzumab Vedotin, Ladirubicin, Laetrile, LAIR-2 Fusion Protein NC410, Landogrozumab, Laniquidar, Lanreotide Acetate, Lapachone, Lapatinib, Lapatinib Ditosylate, Laprituximab Emtansine, Lapuleucel-T, Laromustine, Larotaxel, Larotinib Mesylate, Larotrectinib, Larotrectinib Sulfate, Lavendustin A, Lazertinib, Lead Pb 212 TCMC-trastuzumab, Lefitolimod, Leflunomide, Lenalidomide, Lenalidomide Analog KPG-121, Lentinan, Lenvatinib, Lenvatinib Mesylate, Lenzilumab, Lerociclib, Lestaurtinib, Letetresgene Autoleucel, Letolizumab, Letrozole, Leucovorin, Leucovorin Calcium, Leuprolide, Leuprolide Acetate, Leuprolide Mesylate Injectable Suspension, Leurubicin, Levetiracetam, Levoleucovorin Calcium, Levothyroxine, Levothyroxine Sodium, Lexatumumab, Lexibulin, Liarozole, Liarozole Fumarate, Liarozole Hydrochloride, Licartin, Licorice, Lifastuzumab Vedotin, Lifileucel, Lifirafenib, Light-activated AU-011, Light-Emitting Oncolytic Vaccinia Virus GL-ONC1, Lilotomab, Limonene; (+)-, Limonene; (+/-)-, Linifanib, Linoleyl Carbonate-Paclitaxel, Linperlisib, Linrodostat, Linsitinib, Lintuzumab, Liothyronine I-131, Liothyronine Sodium, Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1, Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191, Lipid Nanoparticle Encapsulated OX40L mRNA-2416, Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006, Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752, Liposomal Bcl-2 Antisense Oligonucleotide BP1002, Liposomal c-raf Antisense Oligonucleotide, Liposomal Curcumin, Liposomal Cytarabine, Liposomal Daunorubicin Citrate, Liposomal Docetaxel, Liposomal Eribulin Mesylate, Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101, Liposomal Irinotecan, Liposomal Mitoxantrone Hydrochloride, Liposomal MUC1/PET-lipid A Vaccine ONT-10, Liposomal NDDP, Liposomal Rhenium Re 186, Liposomal SN-38, Liposomal Topotecan FF-10850, Liposomal Vinorelbine, Liposomal Vinorelbine Tartrate, Liposome, Liposome-encapsulated Daunorubicin-Cytarabine, Liposome-Encapsulated Doxorubicin Citrate, Liposome-encapsulated miR-34 Mimic MRX34, Liposome-encapsulated OSI-7904, Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94, Liposome-encapsulated TAAs mRNA Vaccine W_ova1, Lirilumab, Lisavanbulin, Lisocabtagene Maraleucel, Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142, Litronesib, Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809, Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207, Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623, Liver X Receptor beta Agonist RGX-104, Lm-tLLO-neoantigens Vaccine ADXS-NEO, LMB-1 Immunotoxin, LMB-2 Immunotoxin, LMB-7 Immunotoxin, LMB-9 Immunotoxin, LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164, LMP-2:340-349 Peptide Vaccine, LMP-2:419-427 Peptide Vaccine, LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes, LMP7 Inhibitor M3258, Lobaplatin, Lodapolimab, Lometrexol, Lometrexol Sodium, Lomustine, Lonafarnib, Loncastuximab Tesirine, Long Peptide Vaccine 7, Long-acting Release Pasireotide, Lontucirev, Lorlatinib, Lorukafusp alfa, Lorvotuzumab Mertansine, Losatuxizumab Vedotin, Losoxantrone, Losoxantrone Hydrochloride, Lovastatin, LOXL2 Inhibitor PAT-1251, LRP5 Antagonist BI 905681, LRP5/6 Antagonist BI 905677, LSD1 Inhibitor CC-90011, LSD1 Inhibitor GSK2879552, LSD1 Inhibitor IMG-7289, LSD1 Inhibitor RO7051790, LSD1 Inhibitor SYHA1807, Lucanthone, Lucatumumab, Lucitanib, Luminespib, Luminespib Mesylate, Lumretuzumab, Lung-targeted Immunomodulator QBKPN, Lupartumab Amadotin, Lurbinectedin, Lurtotecan, Lurtotecan Liposome, Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1, Lutetium Lu 177 DOTA-biotin, Lutetium Lu 177 DOTA-N3-CTT1403, Lutetium Lu 177 DOTA-Tetulomab, Lutetium Lu 177 Dotatate, Lutetium Lu 177 Lilotomab-satetraxetan, Lutetium Lu 177 Monoclonal Antibody CC49, Lutetium Lu 177 Monoclonal Antibody J591, Lutetium Lu 177 PP-F11N, Lutetium Lu 177 Satoreotide Tetraxetan, Lutetium Lu 177-DOTA-EB-TATE, Lutetium Lu 177-DTPA-omburtamab, Lutetium Lu 177-Edotreotide, Lutetium Lu 177-NeoB, Lutetium Lu 177-PSMA-617, Lutetium Lu-177 Capromab, Lutetium Lu-177 Girentuximab, Lutetium Lu-177 PSMA-R2, Lutetium Lu-177 Rituximab, LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1, Lyophilized Black Raspberry Lozenge, Lyophilized Black Raspberry Saliva Substitute, Lysine-specific Demethylase 1 Inhibitor INCB059872, Lyso-Thermosensitive Liposome Doxorubicin, Maackia amurensis Seed Lectin, Macimorelin, Macitentan, Macrocycle-bridged STING Agonist E7766, Maekmoondong-tang, Mafosfamide, MAGE-10.A2, MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells, MAGE-A3 Multipeptide Vaccine GL-0817, MAGE-A3 Peptide Vaccine, MAGE-A3-specific Immunotherapeutic GSK 2132231A, MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201, Magnesium Valproate, Magrolimab, MALT1 Inhibitor JNJ-67856633, Manelimab, Mannosulfan, Mannosylerythritol Lipid, Mapatumumab, Maraba Oncolytic Virus Expressing Mutant HPV E6/E7, Marcellomycin, MARCKS Protein Inhibitor BIO-11006, Margetuximab, Marimastat, Marizomib, Masitinib Mesylate, Masoprocol, MAT2A Inhibitor AG-270, Matrix Metalloproteinase Inhibitor MMI270, Matuzumab, Mavelertinib, Mavorixafor, Maytansine, MCL-1 Inhibitor ABBV-467, MCL-1 Inhibitor AMG 176, MCL-1 inhibitor AMG 397, Mcl-1 Inhibitor AZD5991, Mcl-1 Inhibitor MIK665, MDM2 Antagonist ASTX295, MDM2 Antagonist RO5045337, MDM2 Antagonist RO6839921, MDM2 Inhibitor AMG-232, MDM2 Inhibitor AMGMDS3, MDM2 Inhibitor BI 907828, MDM2 Inhibitor KRT-232, MDM2/MDMX Inhibitor ALRN-6924, MDR Modulator CBT-1, Mechlorethamine, Mechlorethamine Hydrochloride, Mechlorethamine Hydrochloride Gel, Medorubicin, Medroxyprogesterone, Medroxyprogesterone Acetate, Megestrol Acetate, MEK 1/2 Inhibitor AS703988/MSC2015103B, MEK 1/2 Inhibitor FCN-159, MEK Inhibitor AZD8330, MEK Inhibitor CI-1040, MEK inhibitor CS3006, MEK Inhibitor GDC-0623, MEK Inhibitor HL-085, MEK Inhibitor PD0325901, MEK Inhibitor RO4987655, MEK Inhibitor SHR 7390, MEK Inhibitor TAK-733, MEK Inhibitor WX-554, MEK-1/MEKK-1 Inhibitor E6201, MEK/Aurora Kinase Inhibitor BI 847325, Melanoma Monoclonal Antibody hIgG2A, Melanoma TRP2 CTL Epitope Vaccine SCIB1, Melapuldencel-T, MELK Inhibitor OTS167, Melphalan, Melphalan Flufenamide, Melphalan Hydrochloride, Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex, Membrane-Disrupting Peptide EP-100, Menatetrenone, Menin-MLL Interaction Inhibitor SNDX-5613, Menogaril, Merbarone, Mercaptopurine, Mercaptopurine Anhydrous, Mercaptopurine Oral Suspension, Merestinib, Mesna, Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536, MET Kinase Inhibitor OMO-1, MET Tyrosine Kinase Inhibitor BMS-777607, MET Tyrosine Kinase Inhibitor EMD 1204831, MET Tyrosine Kinase Inhibitor PF-04217903, MET Tyrosine Kinase Inhibitor SAR125844, MET Tyrosine Kinase Inhibitor SGX523, MET x MET Bispecific Antibody REGN5093, Metamelfalan, MetAP2 Inhibitor APL-1202, MetAP2 Inhibitor SDX-7320, Metarrestin, Metatinib Tromethamine, Metformin, Metformin Hydrochloride, Methanol Extraction Residue of BCG, Methazolamide, Methionine Aminopeptidase 2 Inhibitor M8891, Methionine Aminopeptidase 2 Inhibitor PPI-2458, Methotrexate, Methotrexate Sodium, Methotrexate-E Therapeutic Implant, Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles, Methoxsalen, Methoxyamine, Methoxyamine Hydrochloride, Methyl-5-Aminolevulinate Hydrochloride Cream, Methylcantharidimide, Methylmercaptopurine Riboside, Methylprednisolone, Methylprednisolone Acetate, Methylprednisolone Sodium Succinate, Methylselenocysteine, Methyltestosterone, Metoprine, Mevociclib, Mezagitamab, Mibefradil, Mibefradil Dihydrochloride, Micellar Nanoparticle-encapsulated Epirubicin, Micro Needle Array-Doxorubicin, Microbiome GEN-001, Microbiome-derived Peptide Vaccine EO2401, Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300, Microtubule Inhibitor SCB01A, Midostaurin, Mifamurtide, Mifepristone, Milademetan Tosylate, Milataxel, Milatuzumab, Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110, Milciclib Maleate, Milk Thistle, Miltefosine, Minretumomab, Mipsagargin, Miptenalimab, Mirabegron, Miransertib, Mirdametinib, Mirvetuximab Soravtansine, Mirzotamab Clezutoclax, Misonidazole, Mistletoe Extract, Mitazalimab, Mitindomide, Mitobronitol, Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101, Mitoclomine, Mitoflaxone, Mitoguazone, Mitoguazone Dihydrochloride, Mitolactol, Mitomycin, Mitomycin A, Mitomycin B, Mitomycin C Analog KW-2149, Mitosis Inhibitor T 1101 Tosylate, Mitotane, Mitotenamine, Mitoxantrone, Mitoxantrone Hydrochloride, Mitozolomide, Mivavotinib, Mivebresib, Mivobulin, Mivobulin Isethionate, Mixed Bacteria Vaccine, MK0731, MKC-1, MKNK1 Inhibitor BAY 1143269, MMP Inhibitor S-3304, MNK1/2 Inhibitor ETC-1907206, Mobocertinib, Mocetinostat, Modakafusp Alfa, Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208, Modified Vitamin D Binding Protein Macrophage Activator EF-022, Modotuximab, MOF Compound RiMO-301, Mofarotene, Mogamulizumab, Molibresib, Molibresib Besylate, Momelotinib, Monalizumab, Monocarboxylate Transporter 1 Inhibitor AZD3965, Monoclonal Antibody 105AD7 Anti-idiotype Vaccine, Monoclonal Antibody 11D10, Monoclonal Antibody 11D10 Anti-Idiotype Vaccine, Monoclonal Antibody 14G2A, Monoclonal Antibody 1F5, Monoclonal Antibody 3622W94, Monoclonal Antibody 3F8, Monoclonal Antibody 3H1 Anti-Idiotype Vaccine, Monoclonal Antibody 4B5 Anti-Idiotype Vaccine, Monoclonal Antibody 7C11, Monoclonal Antibody 81C6, Monoclonal Antibody A1G4 Anti-Idiotype Vaccine, Monoclonal Antibody A27.15, Monoclonal Antibody A33, Monoclonal Antibody AbGn-7, Monoclonal Antibody AK002, Monoclonal Antibody ASP1948, Monoclonal Antibody CAL, Monoclonal Antibody CC49-delta CH2, Monoclonal Antibody CEP-37250/KHK2804, Monoclonal Antibody D6.12, Monoclonal Antibody E2.3, Monoclonal Antibody F19, Monoclonal Antibody GD2 Anti-Idiotype Vaccine, Monoclonal Antibody HeFi-1, Monoclonal Antibody Hu3S193, Monoclonal Antibody HuAFP31, Monoclonal Antibody HuHMFG1, Monoclonal Antibody huJ591, Monoclonal Antibody HuPAM4, Monoclonal Antibody IMMU-14, Monoclonal Antibody L6, Monoclonal Antibody Lym-1, Monoclonal Antibody m170, Monoclonal Antibody Me1-14 F(ab')2, Monoclonal Antibody muJ591, Monoclonal Antibody MX35 F(ab')2, Monoclonal Antibody NEO-201, Monoclonal Antibody R24, Monoclonal Antibody RAV12, Monoclonal Antibody SGN-14, Monoclonal Antibody TRK-950, Monoclonal Microbial EDP1503, Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100, Monomethyl Auristatin E, Morinda Citrifolia Fruit Extract, Morpholinodoxorubicin, Mosedipimod, Mosunetuzumab, Motesanib, Motesanib Diphosphate, Motexafin Gadolinium, Motexafin Lutetium, Motixafortide, Motolimod, MOv-gamma Chimeric Receptor Gene, Moxetumomab Pasudotox, Mps1 Inhibitor BAY 1217389, Mps1 Inhibitor BOS172722, mRNA-based Personalized Cancer Vaccine mRNA-4157, mRNA-based Personalized Cancer Vaccine NCI-4650, mRNA-based TriMix Melanoma Vaccine ECI-006, mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902, mRNA-derived KRAS-targeted Vaccine V941, mRNA-derived Lung Cancer Vaccine BI 1361849, mRNA-Derived Prostate Cancer Vaccine CV9103, mRNA-derived Prostate Cancer Vaccine CV9104, MTF-1 Inhibitor APTO-253 HCl, mTOR Inhibitor GDC-0349, mTOR Kinase Inhibitor AZD8055, mTOR Kinase Inhibitor CC-223, mTOR Kinase Inhibitor OSI-027, mTOR Kinase Inhibitor PP242, mTOR1/2 Kinase Inhibitor ME-344, mTORC 1/2 Inhibitor LXI-15029, mTORC1/2 Kinase Inhibitor BI 860585, mTORC1/mTORC2/DHFR Inhibitor ABTL0812, MUC-1/WT1 Peptide-primed Autologous Dendritic Cells, MUC1-targeted Peptide GO-203-2C, Mucoadhesive Paclitaxel Formulation, Multi-AGC Kinase Inhibitor AT13148, Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200, Multi-epitope HER2 Peptide Vaccine H2NVAC, Multi-epitope HER2 Peptide Vaccine TPIV100, Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107, Multi-kinase Inhibitor TPX-0022, Multi-kinase Inhibitor XL092, Multi-mode Kinase Inhibitor EOC317, Multi-neo-epitope Vaccine OSE 2101, Multifunctional/Multitargeted Anticancer Agent OMN54, Multikinase Inhibitor 4SC-203, Multikinase Inhibitor AEE788, Multikinase Inhibitor AT9283, Multikinase Inhibitor SAR103168, Multipeptide Vaccine S-588210, Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327, Muparfostat, Mureletecan, Murizatoclax, Muscadine Grape Extract, Mutant IDH1 Inhibitor DS-1001, Mutant p53 Activator COTI-2, Mutant-selective EGFR Inhibitor PF-06459988, MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP, MVA-BN Smallpox Vaccine, MVA-FCU1 TG4023, MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1, MYC-targeting siRNA DCR-MYC, Mycobacterium tuberculosis Arabinomannan Z-100, Mycobacterium w, Mycophenolic Acid, N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea, N-dihydrogalactochitosan, N-Methylformamide, N;N-Dibenzyl Daunomycin, NA17-A Antigen, NA17.A2 Peptide Vaccine, Nab-paclitaxel, Nab-paclitaxel/Rituximab-coated Nanoparticle AR160, Nadofaragene Firadenovec, Nagrestipen, Namirotene, Namodenoson, NAMPT Inhibitor OT-82, Nanafrocin, Nanatinostat, Nanocell-encapsulated miR-16-based microRNA Mimic, Nanoparticle Albumin-Bound Docetaxel, Nanoparticle Albumin-Bound Rapamycin, Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404, Nanoparticle Paclitaxel Ointment SOR007, Nanoparticle-based Paclitaxel Suspension, Nanoparticle-encapsulated Doxorubicin Hydrochloride, Nanoscale Coordination Polymer Nanoparticles CPI-100, Nanosomal Docetaxel Lipid Suspension, Napabucasin, Naphthalimide Analogue UNBS5162, Naptumomab Estafenatox, Naquotinib, Naratuximab Emtansine, Narnatumab, Natalizumab, Natural IFN-alpha OPC-18, Natural Killer Cells ZRx101, Navarixin, Navicixizumab, Navitoclax, Navoximod, Navy Bean Powder, Naxitamab, Nazartinib, ncmtRNA Oligonucleotide Andes-1537, Necitumumab, Nedaplatin, NEDD8 Activating Enzyme E1 Inhibitor TAS4464, Nedisertib, Nelarabine, Nelipepimut-S, Nelipepimut-S Plus GM-CSF Vaccine, Nemorubicin, Nemorubicin Hydrochloride, Neoantigen Vaccine GEN-009, Neoantigen-based Glioblastoma Vaccine, Neoantigen-based Melanoma-Poly-ICLC Vaccine, Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine, Neoantigen-based Therapeutic Cancer Vaccine GRT-C903, Neoantigen-based Therapeutic Cancer Vaccine GRT-R904, Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017, Neratinib, Neratinib Maleate, Nesvacumab, NG-nitro-L-arginine, Niacinamide, Niclosamide, Nicotinamide Riboside, Nidanilimab, Nifurtimox, Nilotinib, Nilotinib Hydrochloride Anhydrous, Nilotinib Hydrochloride Monohydrate, Nilutamide, Nimesulide-Hyaluronic Acid Conjugate CA102N, Nimodipine, Nimotuzumab, Nimustine, Nimustine Hydrochloride, Ningetinib Tosylate, Nintedanib, Niraparib, Niraparib Tosylate Monohydrate, Nirogacestat, Nitric Oxide-Releasing Acetylsalicylic Acid Derivative, Nitrogen Mustard Prodrug PR-104, Nitroglycerin Transdermal Patch, Nivolumab, NLRP3 Agonist BMS-986299, Nocodazole, Nogalamycin, Nogapendekin Alfa, Nolatrexed Dihydrochloride, Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201, Norgestrel, North American Ginseng Extract AFX-2, Nortopixantrone, Noscapine, Noscapine Hydrochloride, Not Otherwise Specified, Notch Signaling Inhibitor PF-06650808, Notch Signaling Pathway Inhibitor MK0752, NTRK/ROS1 Inhibitor DS-6051b, Nucleolin Antagonist IPP-204106N, Nucleoside Analog DFP-10917, Nucleotide Analog Prodrug NUC-3373, Nucleotide Analogue GS 9219, Numidargistat, Nurulimab, Nutlin-3a, Nutraceutical TBL-12, NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611, NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301, NY-ESO-1/GLA-SE Vaccine ID-G305, NY-ESO-B, O-Chloroacetylcarbamoylfumagillol, O6-Benzylguanine, Obatoclax Mesylate, Obinutuzumab, Oblimersen Sodium, Ocaratuzumab, Ocrelizumab, Octreotide, Octreotide Acetate, Octreotide Pamoate, Odronextamab, Ofatumumab, Ofranergene Obadenovec, Oglufanide Disodium, Olaparib, Olaptesed Pegol, Olaratumab, Oleandrin, Oleclumab, Oligo-fucoidan, Oligonucleotide SPC2996, Olinvacimab, Olivomycin, Olmutinib, Oltipraz, Olutasidenib, Olvimulogene Nanivacirepvec, Omacetaxine Mepesuccinate, Ombrabulin, Omipalisib, Onalespib, Onalespib Lactate, Onartuzumab, Onatasertib, Oncolytic Adenovirus Ad5-DNX-2401, Oncolytic Adenovirus ORCA-010, Oncolytic Herpes Simplex Virus-1 ONCR-177, Oncolytic HSV-1 C134, Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011, Oncolytic HSV-1 G207, Oncolytic HSV-1 NV1020, Oncolytic HSV-1 rQNestin34.5v.2, Oncolytic HSV-1 rRp450, Oncolytic HSV1716, Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein, Oncolytic Newcastle Disease Virus MEDI5395, Oncolytic Newcastle Disease Virus MTH-68H, Oncolytic Newcastle Disease Virus Strain PV701, Oncolytic Virus ASP9801, Oncolytic Virus RP1, Ondansetron Hydrochloride, Ontorpacept, Ontuxizumab, Onvansertib, Onvatilimab, Opaganib, OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule, Opioid Growth Factor, Opolimogene Capmilisbac, Oportuzumab Monatox, Oprozomib, Opucolimab, Oral Aminolevulinic Acid Hydrochloride, Oral Azacitidine, Oral Cancer Vaccine V3-OVA, Oral Docetaxel, Oral Fludarabine Phosphate, Oral Hsp90 Inhibitor IPI-493, Oral Ixabepilone, Oral Microencapsulated Diindolylmethane, Oral Milataxel, Oral Myoma Vaccine V3-myoma, Oral Pancreatic Cancer Vaccine V3-P, Oral Picoplatin, Oral Sodium Phenylbutyrate, Oral Topotecan Hydrochloride, Orantinib, Oraxol, Oregovomab, Orelabrutinib, Ormaplatin, Ortataxel, Orteronel, Orvacabtagene Autoleucel, Osilodrostat, Osimertinib, Other, Otlertuzumab, Ovapuldencel-T, Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006, Ovine Submaxillary Mucin, OX40L-expressing Oncolytic Adenovirus DNX-2440, Oxaliplatin, Oxaliplatin Eluting Beads, Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome, Oxcarbazepine, Oxeclosporin, Oxidative Phosphorylation Inhibitor IACS-010759, Oxidative Phosphorylation Inhibitor IM156, Oxidopamine, OxPhos Inhibitor VLX600, Ozarelix, P-cadherin Antagonist PF-03732010, P-cadherin Inhibitor PCA062, P-cadherin-targeting Agent PF-06671008, P-p68 Inhibitor RX-5902, P-TEFb Inhibitor BAY1143572, p300/CBP Bromodomain Inhibitor CCS1477, p38 MAPK Inhibitor LY3007113, p53 Peptide Vaccine MPS-128, p53-HDM2 Interaction Inhibitor MI-773, p53-HDM2 Protein-protein Interaction Inhibitor APG-115, p53/HDM2 Interaction Inhibitor CGM097, p70S6K Inhibitor LY2584702, p70S6K/Akt Inhibitor MSC2363318A, p97 Inhibitor CB-5083, p97 Inhibitor CB-5339, p97 Inhibitor CB-5339 Tosylate, Paclitaxel, Paclitaxel Ceribate, Paclitaxel Injection Concentrate for Nanodispersion, Paclitaxel Liposome, Paclitaxel Poliglumex, Paclitaxel Polymeric Micelle Formulation NANT-008, Paclitaxel PPE Microspheres, Paclitaxel Trevatide, Paclitaxel Vitamin E-Based Emulsion, Paclitaxel-Loaded Polymeric Micelle, Pacmilimab, Pacritinib, Padeliporfin, Padoporfin, PAK4 Inhibitor PF-03758309, PAK4/NAMPT Inhibitor KPT-9274, Palbociclib, Palbociclib Isethionate, Palifosfamide, Palifosfamide Tromethamine, Palladium Pd-103, Palonosetron Hydrochloride, Pamidronate Disodium, Pamidronic Acid, Pamiparib, Pamrevlumab, pan FGFR Inhibitor PRN1371, Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514, Pan-AKT Inhibitor ARQ751, Pan-AKT Kinase Inhibitor GSK690693, Pan-FGFR Inhibitor LY2874455, Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806, pan-HER Kinase Inhibitor AC480, Pan-IDH Mutant Inhibitor AG-881, Pan-KRAS Inhibitor BI 1701963, Pan-Mutant-IDH1 Inhibitor Bay-1436032, Pan-mutation-selective EGFR Inhibitor CLN-081, pan-PI3K Inhibitor CLR457, pan-PI3K/mTOR Inhibitor SF1126, Pan-PIM Inhibitor INCB053914, pan-PIM Kinase Inhibitor AZD1208, pan-PIM Kinase Inhibitor NVP-LGB-321, pan-RAF Inhibitor LXH254, Pan-RAF Inhibitor LY3009120, pan-RAF Kinase Inhibitor CCT3833, pan-RAF Kinase Inhibitor TAK-580, Pan-RAR Agonist/AP-1 Inhibitor LGD 1550, Pan-TRK Inhibitor NOV1601, Pan-TRK Inhibitor ONO-7579, Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981, Pancratistatin, Panitumumab, Panobinostat, Panobinostat Nanoparticle Formulation MTX110, Panulisib, Paricalcitol, PARP 1/2 Inhibitor IMP4297, PARP 1/2 Inhibitor NOV1401, PARP Inhibitor AZD2461, PARP Inhibitor CEP-9722, PARP Inhibitor E7016, PARP Inhibitor NMS-03305293, PARP-1/2 Inhibitor ABT-767, PARP/Tankyrase Inhibitor 2X-121, PARP7 Inhibitor RBN-2397, Parsaclisib, Parsaclisib Hydrochloride, Parsatuzumab, Partially Engineered T-regulatory Cell Donor Graft TRGFT-201, Parvovirus H-1, Pasireotide, Pasotuxizumab, Patidegib, Patidegib Topical Gel, Patritumab, Patritumab Deruxtecan, Patupilone, Paxalisib, Pazopanib, Pazopanib Hydrochloride, pbi-shRNA STMN1 Lipoplex, PBN Derivative OKN-007, PCNU, PD-1 Directed Probody CX-188, PD-1 Inhibitor, PD-L1 Inhibitor GS-4224, PD-L1 Inhibitor INCB086550, PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480, PD-L1/PD-L2/VISTA Antagonist CA-170, PDK1 Inhibitor AR-12, pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0, PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1, PEG-interleukin-2, PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1, PEG-Proline-Interferon Alfa-2b, Pegargiminase, Pegaspargase, Pegdinetanib, Pegfilgrastim, Pegilodecakin, Peginterferon Alfa-2a, Peginterferon Alfa-2b, Pegvisomant, Pegvorhyaluronidase Alfa, Pegylated Deoxycytidine Analogue DFP-14927, Pegylated Interferon Alfa, Pegylated Liposomal Belotecan, Pegylated Liposomal Doxorubicin Hydrochloride, Pegylated Liposomal Irinotecan, Pegylated Liposomal Mitomycin C Lipid-based Prodrug, Pegylated Liposomal Mitoxantrone Hydrochloride, Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010, Pegylated Paclitaxel, Pegylated Recombinant Human Arginase I BCT-100, Pegylated Recombinant Human Hyaluronidase PH20, Pegylated Recombinant Interleukin-2 THOR-707, Pegylated Recombinant L-asparaginase Erwinia chrysanthemi, Pegylated SN-38 Conjugate PLX038, Pegzilarginase, Pelabresib, Pelareorep, Peldesine, Pelitinib, Pelitrexol, Pembrolizumab, Pemetrexed, Pemetrexed Disodium, Pemigatinib, Pemlimogene Merolisbac, Penberol, Penclomedine, Penicillamine, Pentamethylmelamine, Pentamustine, Pentostatin, Pentoxifylline, PEOX-based Polymer Encapsulated Paclitaxel FID-007, PEP-3-KLH Conjugate Vaccine, Pepinemab, Peplomycin, Peplomycin Sulfate, Peposertib, Peptichemio, Peptide 946 Melanoma Vaccine, Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine, Peretinoin, Perflenapent Emulsion, Perfosfamide, Perifosine, Perillyl Alcohol, Personalized ALL-specific Multi-HLA-binding Peptide Vaccine, Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC, Personalized Cancer Vaccine RO7198457, Personalized Neoantigen DNA Vaccine GNOS-PV01, Personalized Neoantigen DNA Vaccine GNOS-PVO2, Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01, Personalized Neoepitope Yeast Vaccine YE-NEO-001, Personalized Peptide Cancer Vaccine NEO-PV-01, Pertuzumab, Pevonedistat, Pexastimogene Devacirepvec, Pexidartinib, Pexmetinib, PGG Beta-Glucan, PGLA/PEG Copolymer-Based Paclitaxel, PH20 Hyaluronidase-expressing Adenovirus VCN-01, Phaleria macrocarpa Extract DLBS-1425, Pharmacological Ascorbate, Phellodendron amurense Bark Extract, Phenesterin, Phenethyl Isothiocyanate, Phenethyl Isothiocyanate-containing Watercress Juice, Phenyl Acetate, Phenytoin Sodium, Phosphaplatin PT-112, Phosphatidylcholine-Bound Silybin, Phospholipid Ether-drug Conjugate CLR 131, Phosphoramide Mustard, Phosphorodiamidate Morpholino Oligomer AVI-4126, Phosphorus P-32, Photodynamic Compound TLD-1433, Photosensitizer LUZ 11, Phytochlorin Sodium-Polyvinylpyrrolidone Complex, PI3K Alpha/Beta Inhibitor BAY1082439, PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate, PI3K Inhibitor ACP-319, PI3K Inhibitor BGT226, PI3K Inhibitor GDC-0084, PI3K Inhibitor GDC0077, PI3K Inhibitor GSK1059615, PI3K Inhibitor WX-037, PI3K Inhibitor ZSTK474, PI3K p110beta/delta Inhibitor KA2237, PI3K-alpha Inhibitor MEN1611, PI3K-beta Inhibitor GSK2636771, PI3K-beta Inhibitor SAR260301, PI3K-delta Inhibitor AMG 319, PI3K-delta Inhibitor HMPL 689, PI3K-delta Inhibitor INCB050465, PI3K-delta Inhibitor PWT143, PI3K-delta Inhibitor SHC014748M, PI3K-delta Inhibitor YY-20394, PI3K-gamma Inhibitor IPI-549, PI3K/BET Inhibitor LY294002, PI3K/mTOR Kinase Inhibitor DS-7423, PI3K/mTOR Kinase Inhibitor PF-04691502, PI3K/mTOR Kinase Inhibitor VS-5584, PI3K/mTOR Kinase Inhibitor WXFL10030390, PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170, PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901, PI3Ka/mTOR Inhibitor PKI-179, PI3Kalpha Inhibitor AZD8835, PI3Kbeta Inhibitor AZD8186, PI3Kdelta Inhibitor GS-9901, Pibenzimol, Pibrozelesin, Pibrozelesin Hydrobromide, Picibanil, Picoplatin, Picrasinoside H, Picropodophyllin, Pictilisib, Pictilisib Bismesylate, Pidilizumab, Pilaralisib, PIM Kinase Inhibitor LGH447, PIM Kinase Inhibitor SGI-1776, PIM Kinase Inhibitor TP-3654, PIM/FLT3 Kinase Inhibitor SEL24, Pimasertib, Pimitespib, Pimurutamab, Pinatuzumab Vedotin, Pingyangmycin, Pinometostat, Pioglitazone, Pioglitazone Hydrochloride, Pipendoxifene, Piperazinedione, Piperine Extract (Standardized), Pipobroman, Piposulfan, Pirarubicin, Pirarubicin Hydrochloride, Pirfenidone, Piritrexim, Piritrexim Isethionate, Pirotinib, Piroxantrone, Piroxantrone Hydrochloride, Pixantrone, Pixantrone Dimaleate, Pixatimod, PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231, PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521, PKC-beta Inhibitor MS-553, Placebo, Pladienolide Derivative E7107, Plamotamab, Plasmid DNA Vaccine pING-hHER3FL, Platinum, Platinum Acetylacetonate-Titanium Dioxide Nanoparticles, Platinum Compound, Plevitrexed, Plicamycin, Plinabulin, Plitidepsin, Plk1 Inhibitor BI 2536, PLK1 Inhibitor CYC140, PLK1 Inhibitor TAK-960, Plocabulin, Plozalizumab, pNGVL4a-CRT-E6E7L2 DNA Vaccine, pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2, Pol I Inhibitor CX5461, Polatuzumab Vedotin, Polidocanol, Poliglusam, Polo-like Kinase 1 Inhibitor GSK461364, Polo-like Kinase 1 Inhibitor MK1496, Polo-like Kinase 1 Inhibitor NMS-1286937, Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate, Poly-alendronate Dextran-Guanidine Conjugate, Poly-gamma Glutamic Acid, Polyamine Analog SL11093, Polyamine Analogue PG11047, Polyamine Analogue SBP-101, Polyamine Transport Inhibitor AMXT-1501 Dicaprate, Polyandrol, Polyethylene Glycol Recombinant Endostatin, Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318, Polymer-conjugated IL-15 Receptor Agonist NKTR-255, Polymer-encapsulated Luteolin Nanoparticle, Polymeric Camptothecin Prodrug XMT-1001, Polypodium leucotomos Extract, Polysaccharide-K, Polysialic Acid, Polyunsaturated Fatty Acid, Polyvalent Melanoma Vaccine, Pomalidomide, Pomegranate Juice, Pomegranate Liquid Extract, Ponatinib, Ponatinib Hydrochloride, Porcupine Inhibitor CGX1321, Porcupine Inhibitor ETC-1922159, Porcupine Inhibitor RXC004, Porcupine Inhibitor WNT974, Porcupine Inhibitor XNW7201, Porfimer Sodium, Porfiromycin, Poziotinib, PPAR Alpha Antagonist TPST-1120, PR1 Leukemia Peptide Vaccine, Pracinostat, Pralatrexate, Pralsetinib, Praluzatamab Ravtansine, PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701, Pravastatin Sodium, Prednimustine, Prednisolone, Prednisolone Acetate, Prednisolone Sodium Phosphate, Prednisone, Prexasertib, Prexigebersen, PRIMA-1 Analog APR-246, Prime Cancer Vaccine MVA-BN-CV301, Prinomastat, PRMT1 Inhibitor GSK3368715, PRMT5 Inhibitor JNJ-64619178, PRMT5 Inhibitor PRT811, Proapoptotic Sulindac Analog CP-461, Procarbazine, Procarbazine Hydrochloride, Procaspase Activating Compound-1 VO-100, Progestational IUD, Prohibitin-Targeting Peptide 1, Prolgolimab, Prostaglandin E2 EP4 Receptor Inhibitor AN0025, Prostaglandin E2 EP4 Receptor Inhibitor E7046, Prostate Cancer Vaccine ONY-P1, Prostate Health Cocktail Dietary Supplement, Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024, Protease-activated Anti-PD-L1 Antibody Prodrug CX-072, Protein Arginine Methyltransferase 5 Inhibitor GSK3326595, Protein Arginine Methyltransferase 5 Inhibitor PF-06939999, Protein Arginine Methyltransferase 5 Inhibitor PRT543, Protein Kinase C Inhibitor IDE196, Protein Phosphatase 2A Inhibitor LB-100, Protein Stabilized Liposomal Docetaxel Nanoparticles, Protein Tyrosine Kinase 2 Inhibitor IN10018, Proxalutamide, PSA/IL-2/GM-CSF Vaccine, PSA/PSMA DNA Plasmid INO-5150, Pseudoisocytidine, PSMA-targeted Docetaxel Nanoparticles BIND-014, PSMA-targeted Tubulysin B-containing Conjugate EC1169, PSMA/CD3 Tri-specific T-cell Activating Construct HPN424, PTEF-b/CDK9 Inhibitor BAY1251152, Pterostilbene, Pumitepa, Puquitinib, Puquitinib Mesylate, Puromycin, Puromycin Hydrochloride, PV-10, PVA Microporous Hydrospheres/Doxorubicin Hydrochloride, Pyrazinamide, Pyrazoloacridine, Pyridyl Cyanoguanidine CHS 828, Pyrotinib, Pyrotinib Dimaleate, Pyroxamide, Pyruvate Kinase Inhibitor TLN-232, Pyruvate Kinase M2 Isoform Activator TP-1454, Qilisheng Immunoregulatory Oral Solution, Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine, Quarfloxin, Quinacrine Hydrochloride, Quinine, Quisinostat, Quizartinib, R-(-)-Gossypol Acetic Acid, Rabusertib, Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88, Racotumomab, RAD51 Inhibitor CYT-0851, Radgocitabine, Radgocitabine Hydrochloride, Radioactive Iodine, Radiolabeled CC49, Radium Ra 223 Dichloride, Radium Ra 224-labeled Calcium Carbonate Microparticles, Radix Angelicae Sinensis/Radix Astragali Herbal Supplement, Radotinib Hydrochloride, Raf Kinase Inhibitor HM95573, RAF Kinase Inhibitor L-779450, RAF Kinase Inhibitor XL281, Ragifilimab, Ralaniten Acetate, Ralimetinib Mesylate, Raloxifene, Raloxifene Hydrochloride, Raltitrexed, Ramucirumab, Ranibizumab, Ranimustine, Ranolazine, Ranpirnase, RARalpha Agonist IRX5183, Ras Inhibitor, Ras Peptide ASP, Ras Peptide CYS, Ras Peptide VAL, Razoxane, Realgar-Indigo naturalis Formulation, Rebastinib Tosylate, Rebeccamycin, Rebimastat, Receptor Tyrosine Kinase Inhibitor R1530, Recombinant Adenovirus-p53 SCH-58500, Recombinant Anti-WT1 Immunotherapeutic GSK2302024A, Recombinant Bacterial Minicells VAX014, Recombinant Bispecific Single-Chain Antibody rM28, Recombinant CD40-Ligand, Recombinant Erwinia asparaginase JZP-458, Recombinant Erythropoietin, Recombinant Fas Ligand, Recombinant Fractalkine, Recombinant Granulocyte-Macrophage Colony-Stimulating Factor, Recombinant Human 6Ckine, Recombinant Human Adenovirus Type 5 H101, Recombinant Human Angiotensin Converting Enzyme 2 APN01, Recombinant Human Apolipoprotein(a) Kringle V MG1102, Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine, Recombinant Human Endostatin, Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine, Recombinant Human Papillomavirus 11-valent Vaccine, Recombinant Human Papillomavirus Bivalent Vaccine, Recombinant Human Papillomavirus Nonavalent Vaccine, Recombinant Human Plasminogen Kringle 5 Domain ABT 828, Recombinant Human TRAIL-Trimer Fusion Protein SCB-313, Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301, Recombinant Interferon, Recombinant Interferon Alfa, Recombinant Interferon Alfa-1b, Recombinant Interferon Alfa-2a, Recombinant Interferon Alfa-2b, Recombinant Interferon Alpha 2b-like Protein, Recombinant Interferon Beta, Recombinant Interferon Gamma, Recombinant Interleukin-12, Recombinant Interleukin-13, Recombinant Interleukin-18, Recombinant Interleukin-2, Recombinant Interleukin-6, Recombinant KSA Glycoprotein CO17-1A, Recombinant Leukocyte Interleukin, Recombinant Leukoregulin, Recombinant Luteinizing Hormone, Recombinant Macrophage Colony-Stimulating Factor, Recombinant MAGE-3.1 Antigen, Recombinant MIP1-alpha Variant ECI301, Recombinant Modified Vaccinia Ankara-5T4 Vaccine, Recombinant Oncolytic Poliovirus PVS-RIPO, Recombinant Platelet Factor 4, Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A, Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207, Recombinant Super-compound Interferon, Recombinant Thyroglobulin, Recombinant Thyrotropin Alfa, Recombinant Transforming Growth Factor-Beta, Recombinant Transforming Growth Factor-Beta-2, Recombinant Tumor Necrosis Factor-Alpha, Recombinant Tyrosinase-Related Protein-2, Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter, Redaporfin, Refametinib, Regorafenib, Relacorilant, Relatlimab, Relugolix, Remetinostat, Renal Cell Carcinoma Peptides Vaccine IMA901, Reparixin, Repotrectinib, Resiquimod, Resiquimod Topical Gel, Resistant Starch, Resminostat, Resveratrol, Resveratrol Formulation SRT501, RET Inhibitor DS-5010, RET Mutation/Fusion Inhibitor BLU-667, RET/SRC Inhibitor TPX-0046, Retaspimycin, Retaspimycin Hydrochloride, Retelliptine, Retifanlimab, Retinoic Acid Agent Ro 16-9100, Retinoid 9cUAB30, Retinol, Retinyl Acetate, Retinyl Palmitate, Retrovector Encoding Mutant Anti-Cyclin G1, Revdofilimab, Rexinoid NRX 194204, Rezivertinib, RFT5-dgA Immunotoxin IMTOX25, Rhenium Re 188 BMEDA-labeled Liposomes, Rhenium Re-186 Hydroxyethylidene Diphosphonate, Rhenium Re-188 Ethiodized Oil, Rhenium Re-188 Etidronate, Rhizoxin, RhoC Peptide Vaccine RV001V, Ribociclib, Ribociclib/Letrozole, Ribonuclease QBI-139, Ribosome-Inactivating Protein CY503, Ribozyme RPI.4610, Rice Bran, Ricolinostat, Ridaforolimus, Rigosertib, Rigosertib Sodium, Rilimogene Galvacirepvec, Rilimogene Galvacirepvec/Rilimogene Glafolivec, Rilimogene Glafolivec, Rilotumumab, Rindopepimut, Ripertamab, RIPK1 Inhibitor GSK3145095, Ripretinib, Risperidone Formulation in Rumenic Acid, Ritrosulfan, Rituximab, Rituximab and Hyaluronidase Human, Rituximab Conjugate CON-4619, Riviciclib, Rivoceranib, Rivoceranib Mesylate, RNR Inhibitor COH29, Robatumumab, Roblitinib, ROBO1-targeted BiCAR-NKT Cells, Rocakinogene Sifuplasmid, Rocapuldencel-T, Rociletinib, Rodorubicin, Roducitabine, Rofecoxib, Roflumilast, Rogaratinib, Rogletimide, Rolinsatamab Talirine, Romidepsin, Roneparstat, Roniciclib, Ropeginterferon Alfa-2B, Ropidoxuridine, Ropocamptide, Roquinimex, RORgamma Agonist LYC-55716, Rosabulin, Rose Bengal Solution PV-10, Rosiglitazone Maleate, Rosmantuzumab, Rosopatamab, Rosuvastatin, Rovalpituzumab Tesirine, RSK1-4 Inhibitor PMD-026, Rubitecan, Rucaparib, Rucaparib Camsylate, Rucaparib Phosphate, Ruthenium Ru-106, Ruthenium-based Small Molecule Therapeutic BOLD-100, Ruthenium-based Transferrin Targeting Agent NKP-1339, Ruxolitinib, Ruxolitinib Phosphate, Ruxotemitide, S-Adenosylmethionine, S-equol, S1P Receptor Agonist KRP203, Sabarubicin, Sabatolimab, Sacituzumab Govitecan, Sacubitril/Valsartan, Safingol, Sagopilone, Salirasib, Salmonella VNP20009, Sam68 Modulator CWP232291, Samalizumab, Samarium Sm 153-DOTMP, Samotolisib, Samrotamab Vedotin, Samuraciclib, Sapacitabine, Sapanisertib, Sapitinib, Saracatinib, Saracatinib Difumarate, SarCNU, Sardomozide, Sargramostim, Sasanlimab, Satraplatin, Savolitinib, SBIL-2, Scopoletin, SDF-1 Receptor Antagonist PTX-9908, Seclidemstat, Sedoxantrone Trihydrochloride, Selatinib Ditosilate, Selective Androgen Receptor Modulator RAD140, Selective Cytokine Inhibitory Drug CC-1088, Selective Estrogen Receptor Degrader AZD9496, Selective Estrogen Receptor Degrader AZD9833, Selective Estrogen Receptor Degrader LSZ102, Selective Estrogen Receptor Degrader LX-039, Selective Estrogen Receptor Degrader LY3484356, Selective Estrogen Receptor Degrader SRN-927, Selective Estrogen Receptor Modulator CC-8490, Selective Estrogen Receptor Modulator TAS-108, Selective Glucocorticoid Receptor Antagonist CORT125281, Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352, Seliciclib, Selicrelumab, Selinexor, Selitrectinib, Selonsertib, Selpercatinib, Selumetinib, Selumetinib Sulfate, Semaxanib, Semuloparin, Semustine, Seneca Valley Virus-001, Seocalcitol, Sepantronium Bromide, Serabelisib, Serclutamab Talirine, SERD D-0502, SERD G1T48, SERD GDC-9545, SERD SAR439859, SERD SHR9549, SERD ZN-c5, Serdemetan, Sergiolide, Seribantumab, Serine/Threonine Kinase Inhibitor CBP501, Serine/Threonine Kinase Inhibitor XL418, Serplulimab, Sevacizumab, Seviteronel, Shared Anti-Idiotype-AB-S006, Shared Anti-Idiotype-AB-S024A, Shark Cartilage, Shark Cartilage Extract AE-941, Shenqi Fuzheng Injection SQ001, Sho-Saiko-To, Short Chain Fatty Acid HQK-1004, SHP-1 Agonist SC-43, SHP2 Inhibitor JAB-3068, SHP2 Inhibitor RLY-1971, SHP2 Inhibitor RMC-4630, SHP2 Inhibitor TNO155, Shu Yu Wan Formula, Sialyl Tn Antigen, Sialyl Tn-KLH Vaccine, Sibrotuzumab, siG12D LODER, Silatecan AR-67, Silibinin, Silicon Phthalocyanine 4, Silmitasertib Sodium, Siltuximab, Simalikalactone D, Simeprevir, Simlukafusp Alfa, Simmitinib, Simotaxel, Simtuzumab, Simurosertib, Sintilimab, Siplizumab, Sipuleucel-T, Siremadlin, siRNA-transfected Peripheral Blood Mononuclear Cells APN401, Sirolimus, SIRPa-4-1BBL Fusion Protein DSP107, SIRPa-Fc Fusion Protein TTI-621, SIRPa-Fc-CD40L Fusion Protein SL-172154, SIRPa-IgG4-Fc Fusion Protein TTI-622, Sitimagene Ceradenovec, Sitravatinib, Sivifene, Sizofiran, SLC6A8 Inhibitor RGX-202, SLCT Inhibitor GNS561, SMAC Mimetic BI 891065, Smac Mimetic GDC-0152, Smac Mimetic GDC-0917, Smac Mimetic LCL161, SMO Protein Inhibitor ZSP1602, Smoothened Antagonist BMS-833923, Smoothened Antagonist LDE225 Topical, Smoothened Antagonist LEQ506, Smoothened Antagonist TAK-441, SN-38-Loaded Polymeric Micelles NK012, SNS01-T Nanoparticles, Sobuzoxane, Sodium Borocaptate, Sodium Butyrate, Sodium Dichloroacetate, Sodium Iodide I-131, Sodium Metaarsenite, Sodium Phenylbutyrate, Sodium Salicylate, Sodium Selenite, Sodium Stibogluconate, Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108, Sofituzumab Vedotin, Solitomab, Sonepcizumab, Sonidegib, Sonolisib, Sorafenib, Sorafenib Tosylate, Sorghum bicolor Supplement, Sotigalimab, Sotorasib, Sotrastaurin, Sotrastaurin Acetate, Soy Isoflavones, Soy Protein Isolate, Spanlecortemlocel, Sparfosate Sodium, Sparfosic Acid, Spartalizumab, Spebrutinib, Spherical Nucleic Acid Nanoparticle NU-0129, Spirogermanium, Spiromustine, Spiroplatin, Splicing Inhibitor H3B-8800, Spongistatin, Squalamine Lactate, SR-BP1/HSI Inhibitor SR31747A, SR-T100 Gel, Src Kinase Inhibitor AP 23846, Src Kinase Inhibitor KX2-391, Src Kinase Inhibitor KX2-391 Ointment, Src Kinase Inhibitor M475271, Src/Abl Kinase Inhibitor AZD0424, Src/tubulin Inhibitor KX02, SRPK1/ABCG2 Inhibitor SCO-101, ssRNA-based Immunomodulator CV8102, SSTR2-targeting Protein/DM1 Conjugate PEN-221, St. John's Wort, Stallimycin, Staphylococcal Enterotoxin A, Staphylococcal Enterotoxin B, STAT Inhibitor OPB-111077, STAT3 Inhibitor DSP-0337, STAT3 Inhibitor OPB-31121, STAT3 Inhibitor OPB-51602, STAT3 Inhibitor TTI-101, STAT3 Inhibitor WP1066, Staurosporine, STING Agonist BMS-986301, STING Agonist GSK3745417, STING Agonist IMSA101, STING Agonist MK-1454, STING Agonist SB 11285, STING Agonist TAK-676, STING-activating Cyclic Dinucleotide Agonist MIW815, STING-expressing E. coli SYNB1891, Streptonigrin, Streptozocin, Strontium Chloride Sr-89, Submicron Particle Paclitaxel Sterile Suspension, Sugemalimab, Sulfatinib, Sulforaphane, Sulindac, Sulofenur, Sumoylation Inhibitor TAK-981, Sunitinib, Sunitinib Malate, Super Enhancer Inhibitor GZ17-6.02, Superagonist Interleukin-15:Interleukin-15 Receptor alphaSu/Fc Fusion Complex ALT-803, Superoxide Dismutase Mimetic GC4711, Suramin, Suramin Sodium, Survivin Antigen, Survivin Antigen Vaccine DPX-Survivac, Survivin mRNA Antagonist EZN-3042, Survivin-expressing CVD908ssb-TXSVN Vaccine, Sustained-release Lipid Inhaled Cisplatin, Sustained-release Mitomycin C Hydrogel Formulation UGN-101, Sustained-release Mitomycin C Hydrogel Formulation UGN-102, Syk Inhibitor HMPL-523, Synchrotope TA2M Plasmid DNA Vaccine, Synchrovax SEM Plasmid DNA Vaccine, Synthetic Alkaloid PM00104, Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2, Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1, Synthetic hTERT DNA Vaccine INO-1400, Synthetic hTERT DNA Vaccine INO-1401, Synthetic Hypericin, Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201, Synthetic Long E6/E7 Peptides Vaccine HPV-01, Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b, Synthetic Plumbagin PCUR-101, T900607, Tabalumab, Tabelecleucel, Tacedinaline, Tafasitamab, Tagraxofusp-erzs, Talabostat, Talabostat Mesylate, Talacotuzumab, Talactoferrin Alfa, Taladegib, Talampanel, Talaporfin Sodium, Talazoparib, Taletrectinib, Talimogene Laherparepvec, Tallimustine, Talmapimod, Talotrexin, Talotrexin Ammonium, Taltobulin, TAM/c-Met Inhibitor RXDX-106, Tamibarotene, Taminadenant, Tamoxifen, Tamoxifen Citrate, Tamrintamab Pamozirine, Tandutinib, Tanespimycin, Tanibirumab, Tankyrase Inhibitor STP1002, Tanomastat, Tapotoclax, Tarenflurbil, Tarextumab, Tariquidar, Tasadenoturev, Taselisib, Tasidotin, Tasisulam, Tasisulam Sodium, Tasquinimod, Taurolidine, Tauromustine, Taurultam, Taurultam Analogue GP-2250, Tavokinogene Telseplasmid, Tavolimab, Taxane Analogue TPI 287, Taxane Compound, Taxol Analogue SID 530, Tazarotene, Tazemetostat, Tebentafusp, Teclistamab, Tecogalan Sodium, Tefinostat, Tegafur, Tegafur-gimeracil-oteracil Potassium, Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation, Tegafur-Uracil, Tegavivint, Teglarinad, Teglarinad Chloride, Telaglenastat, Telaglenastat Hydrochloride, Telapristone, Telapristone Acetate, Telatinib Mesylate, Telisotuzumab, Telisotuzumab Vedotin, Telomerase Inhibitor FJ5002, Telomerase-specific Type 5 Adenovirus OBP-301, Teloxantrone, Teloxantrone Hydrochloride, Telratolimod, Temarotene, Temoporfin, Temozolomide, Temsirolimus, Tenalisib, Tenifatecan, Teniposide, Tepoditamab, Tepotinib, Teprotumumab, Terameprocol, Terfluranol, Tergenpumatucel-L, Teroxirone, Tertomotide, Tesetaxel, Tesevatinib, Tesidolumab, Testolactone, Testosterone Enanthate, Tetanus Toxoid Vaccine, Tetradecanoylphorbol Acetate, Tetrahydrouridine, Tetraphenyl Chlorin Disulfonate, Tetrathiomolybdate, Tezacitabine, Tezacitabine Anhydrous, TGF-beta Receptor 1 Inhibitor PF-06952229, TGF-beta Receptor 1 Kinase Inhibitor SH3051, TGF-beta Receptor 1 Kinase Inhibitor YL-13027, TGFa-PE38 Immunotoxin, TGFbeta Inhibitor LY3200882, TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200, Thalicarpine, Thalidomide, Theliatinib, Theramide, Therapeutic Angiotensin-(1-7), Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907, Therapeutic Cancer Vaccine ATP128, Therapeutic Estradiol, Therapeutic Hydrocortisone, Therapeutic Liver Cancer Peptide Vaccine IMA970A, Thiarabine, Thiodiglycol, Thioguanine, Thioguanine Anhydrous, Thioinosine, Thioredoxin-1 Inhibitor PX-12, Thiotepa, Thioureidobutyronitrile, THL-P, Thorium Th 227 Anetumab, Thorium Th 227 Anetumab Corixetan, Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439, Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497, Threonine Tyrosine Kinase Inhibitor CFI-402257, Thymidylate Synthase Inhibitor CX1106, Thymidylate Synthase Inhibitor DFP-11207, Thymopentin, Thyroid Extract, Tiazofurin, Tidutamab, Tigapotide, Tigatuzumab, TIGIT Inhibitor M6223, TIGIT-targeting Agent MK-7684, Tilarginine, Tilogotamab, Tilsotolimod Sodium, Timonacic, Tin Ethyl Etiopurpurin, Tinostamustine, Tinzaparin Sodium, Tiomolibdate Choline, Tiomolibdate Diammonium, Tipapkinogene Sovacivec, Tipifarnib, Tipiracil, Tipiracil Hydrochloride, Tirabrutinib, Tiragolumab, Tirapazamine, Tirbanibulin, Tisagenlecleucel, Tislelizumab, Tisotumab Vedotin, Tivantinib, Tivozanib, TLC ELL-12, TLR Agonist BDB001, TLR Agonist BSG-001, TLR Agonist CADI-05, TLR-Directed Cationic Lipid-DNA Complex JVRS-100, TLR7 Agonist 852A, TLR7 agonist BNT411, TLR7 Agonist LHC165, TLR7/8/9 Antagonist IMO-8400, TLR8 Agonist DN1508052, TLR9 Agonist AST-008, TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells, Tocilizumab, Tocladesine, Tocotrienol, Tocotrienol-rich Fraction, Tolebrutinib, Toll-like Receptor 7 Agonist DSP-0509, Tolnidamine, Tomaralimab, Tomato-Soy Juice, Tomivosertib, Topical Betulinic Acid, Topical Celecoxib, Topical Fluorouracil, Topical Gemcitabine Hydrochloride, Topical Potassium Dobesilate, Topical Trichloroacetic Acid, Topixantrone, Topoisomerase I Inhibitor Genz-644282, Topoisomerase I Inhibitor LMP400, Topoisomerase I Inhibitor LMP776, Topoisomerase I/II Inhibitor NEV-801, Topoisomerase-1 Inhibitor LMP744, Topoisomerase-II Inhibitor Racemic XK469, Topoisomerase-II-beta Inhibitor Racemic XK469, Topotecan, Topotecan Hydrochloride, Topotecan Hydrochloride Liposomes, Topotecan Sustained-release Episcleral Plaque, Topsalysin, TORC1/2 Kinase Inhibitor DS-3078a, Toremifene, Toremifene Citrate, Toripalimab, Tosedostat, Tositumomab, Total Androgen Blockade, Tovetumab, Tozasertib Lactate, TP40 Immunotoxin, Trabectedin, Trabedersen, TRAIL Receptor Agonist ABBV-621, Trametinib, Trametinib Dimethyl Sulfoxide, Trans Sodium Crocetinate, Transdermal 17beta-Estradiol Gel BHR-200, Transdermal 4-Hydroxytestosterone, Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01, Transferrin Receptor-Targeted Liposomal p53 cDNA, Transferrin-CRM107, Tranylcypromine Sulfate, Trapoxin, Trastuzumab, Trastuzumab Conjugate BI-CON-02, Trastuzumab Deruxtecan, Trastuzumab Duocarmazine, Trastuzumab Emtansine, Trastuzumab Monomethyl Auristatin F, Trastuzumab-TLR 7/8 Agonist BDC-1001, Trastuzumab/Hyaluronidase-oysk, Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502, Trebananib, Tremelimumab, Treosulfan, Tretazicar, Tretinoin, Tretinoin Liposome, Triamcinolone Acetonide, Triamcinolone Hexacetonide, Triapine, Triazene Derivative CB10-277, Triazene Derivative TriN2755, Triazinate, Triaziquone, Tributyrin, Triciribine Phosphate, Trientine Hydrochloride, Triethylenemelamine, Trifluridine, Trifluridine and Tipiracil Hydrochloride, Trigriluzole, Trilaciclib, Trimelamol, Trimeric GITRL-Fc OMP-336B11, Trimethylcolchicinic Acid, Trimetrexate, Trimetrexate Glucuronate, Trioxifene, Triplatin Tetranitrate, Triptolide Analog, Triptorelin, Triptorelin Pamoate, Tris-acryl Gelatin Microspheres, Tritylcysteine, TRK Inhibitor AZD6918, TRK Inhibitor TQB3558, TrkA Inhibitor VMD-928, Trodusquemine, Trofosfamide, Troglitazone, Tropomyosin Receptor Kinase Inhibitor AZD7451, Troriluzole, Troxacitabine, Troxacitabine Nucleotide Prodrug MIV-818, TRPM8 Agonist D-3263, TRPV6 Calcium Channel Inhibitor SOR-C13, TSP-1 Mimetic ABT-510, TSP-1 Mimetic Fusion Protein CVX-045, Tubercidin, Tubulin Binding Agent TTI-237, Tubulin Inhibitor ALB 109564 Dihydrochloride, Tubulin Inhibitor ALB-109564, Tubulin Polymerization Inhibitor AEZS 112, Tubulin Polymerization Inhibitor CKD-516, Tubulin Polymerization Inhibitor VERU-111, Tubulin-Binding Agent SSR97225, Tucatinib, Tucidinostat, Tucotuzumab Celmoleukin, Tyroserleutide, Tyrosinase Peptide, Tyrosinase-KLH, Tyrosinase:146-156 Peptide, Tyrosine Kinase Inhibitor, Tyrosine Kinase Inhibitor OSI-930, Tyrosine Kinase Inhibitor SU5402, Tyrosine Kinase Inhibitor TL-895, Tyrosine Kinase Inhibitor XL228, UAE Inhibitor TAK-243, Ubenimex, Ubidecarenone Nanodispersion BPM31510n, Ublituximab, Ulinastatin, Ulixertinib, Ulocuplumab, Umbralisib, Uncaria tomentosa Extract, Upamostat, Upifitamab, Uproleselan, Uprosertib, Urabrelimab, Uracil Ointment, Urelumab, Uroacitides, Urokinase-Derived Peptide A6, Ursolic Acid, USP14/UCHL5 Inhibitor VLX1570, Utomilumab, Uzansertib, V930 Vaccine, Vaccine-Sensitized Draining Lymph Node Cells, Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules, Vactosertib, Vadacabtagene Leraleucel, Vadastuximab Talirine, Vadimezan, Valecobulin, Valemetostat, Valproic Acid, Valrubicin, Valspodar, Vandetanib, Vandetanib-eluting Radiopaque Bead BTG-002814, Vandortuzumab Vedotin, Vantictumab, Vanucizumab, Vapreotide, Varlilumab, Varlitinib, Varlitinib Tosylate, Vascular Disrupting Agent BNC105, Vascular Disrupting Agent BNC105P, Vascular Disrupting Agent ZD6126, Vatalanib, Vatalanib Succinate, Vecabrutinib, Vector-peptide Conjugated Paclitaxel, Vedolizumab, VEGF Inhibitor PTC299, VEGF/HGF-targeting DARPin MP0250, VEGFR Inhibitor KRN951, VEGFR-2 DNA Vaccine VXM01, VEGFR/FGFR Inhibitor ODM-203, VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593, VEGFR2 Tyrosine Kinase Inhibitor PF-00337210, VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813, Veliparib, Veltuzumab, Vemurafenib, Venetoclax, Verapamil, Verpasep Caltespen, Verubulin, Verubulin Hydrochloride, Vesencumab, Vesigenurtucel-L, VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220, VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820, Viagenpumatucel-L, Vibecotamab, Vibostolimab, Vilaprisan, Vinblastine, Vinblastine Sulfate, Vincristine, Vincristine Liposomal, Vincristine Sulfate, Vincristine Sulfate Liposome, Vindesine, Vinepidine, Vinflunine, Vinflunine Ditartrate, Vinfosiltine, Vinorelbine, Vinorelbine Tartrate, Vinorelbine Tartrate Emulsion, Vinorelbine Tartrate Oral, Vintafolide, Vinzolidine, Vinzolidine Sulfate, Virulizin, Vismodegib, Vistusertib, Vitamin D3 Analogue ILX23-7553, Vitamin E Compound, Vitespen, VLP-encapsulated TLR9 Agonist CMP-001, Vocimagene Amiretrorepvec, Vofatamab, Volasertib, Volociximab, Vonlerolizumab, Vopratelimab, Vorasidenib, Vorinostat, Vorolanib, Vorsetzumab Mafodotin, Vosaroxin, Vosilasarm, Voxtalisib, Vulinacimab, Warfarin Sodium, Wee1 Inhibitor ZN-c3, Wee1 Kinase Inhibitor Debio 0123, White Carrot, Wnt Signaling Inhibitor SM04755, Wnt Signaling Pathway Inhibitor SM08502, Wnt-5a Mimic Hexapeptide Foxy-5, Wobe-Mugos E, WT1 Peptide Vaccine OCV-501, WT1 Peptide Vaccine WT2725, WT1 Protein-derived Peptide Vaccine DSP-7888, WT1-A10/AS01B Immunotherapeutic GSK2130579A, WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401, Xanthohumol, XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410, Xeloda, Xentuzumab, Xevinapant, Xiaoai Jiedu Decoction, XIAP Antisense Oligonucleotide AEG35156, XIAP/cIAP1 Antagonist ASTX660, Xiliertinib, Xisomab 3G3, XPO1 Inhibitor SL-801, Y 90 Monoclonal Antibody CC49, Y 90 Monoclonal Antibody HMFG1, Y 90 Monoclonal Antibody Lym-1, Y 90 Monoclonal Antibody m170, Y 90 Monoclonal Antibody M195, Yang Yin Fu Zheng, Yangzheng Xiaoji Extract, Yiqi-yangyin-jiedu Herbal Decoction, Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12, Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8, Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101, Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66, Yttrium Y 90 Basiliximab, Yttrium Y 90 Colloid, Yttrium Y 90 Daclizumab, Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A, Yttrium Y 90 Glass Microspheres, Yttrium Y 90 Monoclonal Antibody B3, Yttrium Y 90 Monoclonal Antibody BrE-3, Yttrium Y 90 Monoclonal Antibody Hu3S193, Yttrium Y 90 Monoclonal Antibody MN-14, Yttrium Y 90 Resin Microspheres, Yttrium Y 90 Tabituximab Barzuxetan, Yttrium Y 90-DOTA-Biotin, Yttrium Y 90-DOTA-di-HSG Peptide IMP-288, Yttrium Y 90-Edotreotide, Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101, Yttrium Y-90 Clivatuzumab Tetraxetan, Yttrium Y-90 Epratuzumab Tetraxetan, Yttrium Y-90 Ibritumomab Tiuxetan, Yttrium Y-90 Tacatuzumab Tetraxetan, Yttrium-90 Polycarbonate Brachytherapy Plaque, Z-Endoxifen Hydrochloride, Zalcitabine, Zalifrelimab, Zalutumumab, Zandelisib, Zanidatamab, Zanolimumab, Zanubrutinib, Zebularine, Zelavespib, Zibotentan, Zinc Finger Nuclease ZFN-603, Zinc Finger Nuclease ZFN-758, Zinostatin, Zinostatin Stimalamer, Zirconium Zr 89 Panitumumab, Ziv-Aflibercept, Zolbetuximab, Zoledronic Acid, Zoptarelin Doxorubicin, Zorifertinib, Zorubicin, Zorubicin Hydrochloride, Zotatifin, Zotiraciclib Citrate, Zuclomiphene Citrate, Unknown, Not Reported",,FALSE,,,,, +Model Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,TRUE,,,,CDS Metadata v1.3.3/Diagnosis, +Model Site of Origin,The text term used to describe the anatomic site of origin associated with the malignant disease model.,"Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,TRUE,,,,CDS Imaging v1.0/File information, +Model Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS v5.0.4/Diagnosis, +Model Days to Treatment,Number of days between the date used for index and the date the treatment started.,,,FALSE,,,,CDS v5.0.4/Treatment, +Model Treatment Response,Text term that describes the model's response after the treatment was administered.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS v5.0.4/Treatment, +Name,Name of the individual,,,TRUE,,,,, +Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Email,Email address of the individual,,,FALSE,,,,, +Url,"URL, e.g., individual's home page address",,,FALSE,,,,, +Orcid Id,Unique identifier (ORCID ID) of the individual,,,FALSE,,,,,regex search \d{4}\-\d{4}\-\d{4}\-\d{3}(\d|X) +Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,,,FALSE,,,,,unique +Last Known Institution,Last known institutional affiliation of the individual.,,,TRUE,,,,, +Working Group Participation,"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.","Cancer Metabolism, Cell and Tissue Mechanics, Education and Outreach, Image Analysis, Navigating Cancer with Science and Art, None, Patient Advocacy Working Group, Protein-Protein Interactions, Resource and Data Sharing",,TRUE,,,,,list like +Chair Roles,"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.","Annual Meeting, None, Steering Committee, Working Group",,TRUE,,,,,list like +Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,TRUE,,,,, +Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, +Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,Grant View,, +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like +Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like +Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +PersonView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Project Name,Name of the project,,,TRUE,,,,, +Project Type,Type of project,"Core, Project",,TRUE,,,,, +Project Description,Description of the project,,,TRUE,,,,, +Project Investigator,Investigator(s) associated witht the project.,,,TRUE,,,,,list like +Project View,The denormalized manifest for project submission.,,"Component, ProjectView_id, GrantView Key, Project Name, Project Type, Project Description, Project Investigator",FALSE,,,Grant View,, +Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like +Project Consortium Name,Consortia associated with the project.,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, +ProjectView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,FALSE,,,,,unique +Publication Journal,The name of the periodical publication in which the publication was published.,,,TRUE,,,,, +Pubmed Id,The PubMed identifier associated with the publication.,,,TRUE,,,,,unique +Pubmed Url,Pubmed URL for the publication,,,TRUE,,,,,url +Publication Title,Title of the publication,,,TRUE,,,,, +Publication Year,Year of the publication,,,TRUE,,,,, +Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like +Publication Abstract,The abstract of the publication.,,,TRUE,,,,, +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like +Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like +Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, +Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, GrantView Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,Study,, +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like +Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like +PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, +SequencingLevel1_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique +NGS Sequencing Coverage,Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length),,,FALSE,,,,CDS/Genomic info,num +NGS Read Length,"The average length of the sequencing reads. Can be integer, null",,,TRUE,,,,HTAN,num +NGS Library Selection Method,How nucleic acid molecules are isolated.,"5-methylcytidine antibody, CAGE, rRNA Depletion, cDNA, cDNA oligo_dT, cDNA random priming, CF-H, CF-M, CF-S, CF-T, Poly-T Enrichment, ChIP, DNAse, HMPR, Hybrid Selection, Not applicable, Inverse rRNA, MBD2 protein methyl-CpG binding domain, miRNA Size Fractionation, MDA, MF, MNase, MSLL, Oligo-dT, Other, Padlock probes capture method, PCR, PolyA, RACE, Random, Random PCR, Reduced Representation, Repeat fractionation, Restriction Digest, RT-PCR, Size fractionation, Affinity Enrichment, Unspecified",,FALSE,,,,HTAN,str +NGS Library Strategy,"The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)","AMPLICON, ATAC-seq, Bisulfite-Seq, ChIA-PET, ChIP-Seq, CLONE, CLONEEND, CTS, Spatial-tx, snATAC-Seq, DNase-Hypersensitivity, scMultiome, EST, FAIRE-seq, FINISHING, FL-cDNA, Hi-C, MBD-Seq, MeDIP-Seq, miRNA-Seq, MNase-Seq, MRE-Seq, ncRNA-Seq, Other, POOLCLONE, RAD-Seq, RIP-Seq, RNA-Seq, SELEX, DNA-Seq, ssRNA-seq, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, Tn-Seq, WCS, WGA, WGS, WXS",,TRUE,,,,CDS/sequencing,str +NGS Library Source,The type of source material being sequenced.,"Genomic, Genomic Single Cell, Metagenomic, Single Nucleus, Single Cell, Metatranscriptomic, Other, Synthetic, Transcriptomic, Transcriptomic Single Cell, Viral RNA",,TRUE,,,,CDS/sequencing,str +NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,CDS/sequencing,str +NGS Library Preparation Kit Name,Name of Library Preparation Kit. String,,,FALSE,,,,HTAN,str +NGS Library Preparation Kit Vendor,Vendor of Library Preparation Kit. String,,,FALSE,,,,HTAN,str +NGS Library Preparation Kit Version,Version of Library Preparation Kit. String,,,FALSE,,,,HTAN,str +NGS Sequencing Platform,A platform is an object aggregate that is the set of instruments and software needed to perform a process [OBI_0000050]. Specific model of the sequencing instrument.,"454 GS, 454 GS 20, 454 GS FLX, 454 GS FLX Titanium, 454 GS FLX+, 454 GS Junior, AB 310 Genetic Analyzer, AB 3130 Genetic Analyzer, AB 3130xL Genetic Analyzer, AB 3500 Genetic Analyzer, AB 3500xL Genetic Analyzer, AB 3730 Genetic Analyzer, AB 3730xL Genetic Analyzer, AB 5500 Genetic Analyzer, AB 5500x-Wl Genetic Analyzer, AB 5500xl Genetic Analyzer, AB SOLiD 2, AB SOLiD 3, AB SOLiD 3 Plus System, AB SOLiD 4, AB SOLiD 4hq System, AB SOLiD PI System, AB SOLiD System, BGISEQ-500, Complete Genomics, DNBSEQ-G400, DNBSEQ-G50, DNBSEQ-T7, GridION, Helicos HeliScope, Illumina Genome Analyzer, Illumina Genome Analyzer II, Illumina Genome Analyzer IIx, Illumina HiScanSQ, Illumina HiSeq 1000, Illumina HiSeq 1500, Illumina HiSeq 2000, Illumina HiSeq 2500, Illumina HiSeq 3000, Illumina HiSeq 4000, Illumina HiSeq X Five, Illumina HiSeq X Ten, Illumina iSeq 100, Illumina MiniSeq, Illumina MiSeq, Illumina NextSeq, Illumina NextSeq 2500, Illumina NextSeq 500, Illumina NextSeq 550, Illumina NovaSeq, Illumina NovaSeq 6000, Illumina NovaSeq X Plus, Ion Torrent PGM, Ion Torrent Proton, Ion Torrent S5, Ion Torrent S5 XL, MGISEQ-2000RS, MinION, Not Reported, Other, PacBio RS, PacBio RS II, PacBio Sequel, PacBio Sequel II, PromethION, Ultima Genomics UG100, Unknown",,TRUE,,,,HTAN,str +NGS Sequencing Design Description,Free-form description of the methods used to create the sequencing library; a brief 'materials and methods' section.,,,TRUE,,,,CDS/sequencing,str +NGS Read Indicator,"Indicate if this is Read 1 (R1), Read 2 (R2), Index Reads (I1), or Other","R1, R2, R1&R2, I1, Other",,TRUE,,,,HTAN,str +NGS Library Preparation Days from Index,Number of days between sample for assay was received in lab and the libraries were prepared for sequencing [number]. If not applicable please enter 'Not Applicable',,,FALSE,,,,HTAN,regex match \d+$|Not\sApplicable$|unknown$ +NGS Sequencing Library Construction Days from Index,Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable',,,TRUE,,,,HTAN,regex match \d+$|Not\sApplicable$|unknown$ +NGS Unique Bases,Count of unique basecalls present in the data.,,,FALSE,,,,CDS/Sequencing,num +NGS Raw Reads,Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file. ,,,FALSE,,,,CDS/Sequencing,num +Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, +SequencingLevel2_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique +NGS Stitched Reads,"Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads",,,FALSE,,,,HTAN,num +NGS Aligned Reads,Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.,,,FALSE,,,,HTAN,num +NGS Deduplicated Reads,Is the replacement of blocks of duplicate data with a Virtual Index Pointer linking the new sub-block to the existing block of data in a duplicate repository. This is used to reduce the amount of space need to store the data.,,,FALSE,,,,HTAN,num +NGS Trimmed Reads,Number of the reads remaining after trimming has been applied.,,,FALSE,,,,STE,num +NGS MapQ30,Number of reads with Quality >= 30.,,,FALSE,,,,HTAN,num +Sequencing Level 3,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel3_id, SequencingLevel2 Key, Filename, NGS Unique Probe Count, NGS Unique Target Count, NGS Matrix Type, Software and Version, Workflow Type, Workflow Parameter Description, Workflow Link",FALSE,,,,, +SequencingLevel3_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique +NGS Unique Probe Count,Total number of unique probes reported.,,,FALSE,,,,HTAN,num +NGS Unique Target Count,Total number of unique genes reported.,,,FALSE,,,,HTAN,num +NGS Matrix Type,Type of count data stored in matrix.,"Raw Counts, Normalized Counts, Scaled Counts, Batch Corrected Counts",,FALSE,,,,HTAN, +Sequencing RNA Level 1,Unaligned/unprocessed RNA sequencing data ,,"Component, SequencingRNALevel1_id, Filename, NGS RNA End Bias, NGS RNA Reverse Transcription Primer, NGS RNA RIN, NGS RNA DV200",FALSE,,,Sequencing Level 1,MC2, +SequencingRNALevel1_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique +NGS RNA End Bias,"The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript","3 Prime, 5 Prime, Full Length Transcript",,TRUE,,,,HTAN,str +NGS RNA Reverse Transcription Primer,"An oligo to which new deoxyribonucleotides can be added by DNA polymerase [SO_0000112]. The type of primer used for reverse transcription, e.g. oligo-dT or random primer. This allows users to identify content of the cDNA library input e.g. enriched for mRNA","Oligo-dT, Poly-dT, Feature barcoding, Random",,TRUE,,,,HTAN,str +NGS RNA RIN,A numerical assessment of the integrity of RNA based on the entire electrophoretic trace of the RNA sample including the presence or absence of degradation products. Number,,,FALSE,,,,HTAN,num +NGS RNA DV200,Represents the percentage of RNA fragments that are >200 nucleotides in size. Number,,,FALSE,,,,HTAN,num +Component,"Category of metadata (e.g. Tools, Publications, etc.); provide the same one for all items/rows.",,,TRUE,,shared,,, +Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,shared,,Data Use Ontology,list like +ProjectView Key,"Unique ProjectView_id foreign key(s) that group the resource with other components, as part of the same grant-associated studies. Please provide multiple values as a comma-separated list.",,,FALSE,,project,,MC2,matchAtLeastOne ProjectView.ProjectView_id Value +Study Key,"The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components. Please provide multiple values as a comma-separated list.",,,FALSE,,study,,MC2,matchAtLeastOne Study.Study_id Value +PersonView Key,"Unique PersonView_id foreign key(s) that group the resource with other components, as part of the same person-associated studies. Please provide multiple values as a comma-separated list.",,,FALSE,,person,,MC2,matchAtLeastOne PersonView.PersonView_id Value +Consortium Key,"Unique Consortium_id foreign key(s) that group the resource with other components, as part of the same consortium-associated grants. Please provide multiple values as a comma-separated list.",,,FALSE,,consortium,,MC2,matchAtLeastOne Consortium.Consortium_id Value +GrantView Key,"Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection. Please provide multiple values as a comma-separated list.",,,FALSE,,grant,,MC2,matchAtLeastOne GrantView.GrantView_id Value +DatasetView Key,Unique DatasetView_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,dataset,,MC2,matchAtLeastOne DatasetView.DatasetView_id Value +Biospecimen Key,Unique Biospecimen_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,biospecimen,,MC2,matchAtLeastOne Biospecimen.Biospecimen_id Value +Individual Key,Unique Individual_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,individual,,MC2,matchAtLeastOne Individual.Individual_id Value +PublicationView Key,Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,publication,,MC2,matchAtLeastOne PublicationView.PublicationView_id Value +ToolView Key,Unique ToolView_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,tool,,MC2,matchAtLeastOne ToolView.ToolView_id Value +EducationalResource Key,Unique EducationalResource_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,education,,MC2,matchAtLeastOne EducationalResource.EducationalResource_id Value +DataDSP Key,Unique DataDSP_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.,,,FALSE,,sharingPlans,,MC2,matchAtLeastOne DataDSP.DataDSP_id Value +Model Key,Unique Model_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separate list.,,,FALSE,,model,,MC2,matchAtLeastOne Model.Model_id Value +FileView Key,Unique FileView_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,file,,MC2,matchAtLeastOne FileView.FileView_id Value +NanoStringGeoMxAuxiliaryFiles Key,Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxAuxiliaryFiles.NanoStringGeoMxAuxiliaryFiles_id Value +NanoStringGeoMxDSPImaging Key,Unique NanoStringGeoMxDSPImaging_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPImaging.NanoStringGeoMxDSPImaging_id Value +NanoStringGeoMxDSPLevel1 Key,Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPLevel1.NanoStringGeoMxDSPLevel1_id Value +NanoStringGeoMxDSPLevel2 Key,Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPLevel2.NanoStringGeoMxDSPLevel2_id Value +NanoStringGeoMxDSPLevel3 Key,Unique NanoStringGeoMxDSPLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMxDSPLevel3.NanoStringGeoMxDSPLevel3_id Value +NanoStringGeoMXROISegmentAnnotation Key,Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,geomx,,MC2,matchAtLeastOne NanoStringGeoMXROISegmentAnnotation.NanoStringGeoMXROISegmentAnnotation_id Value +ImagingChannel Key,Unique ImagingChannel_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,TRUE,,imaging,,MC2,matchAtLeastOne ImagingChannel.ImagingChannel_id Value +ImagingLevel1 Key,Unique ImagingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel1.ImagingLevel1_id Value +ImagingLevel2 Key,Unique ImagingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel2.ImagingLevel2_id Value +ImagingLevel3Image Key,Unique ImagingLevel3Image_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel3Image.ImagingLevel3Image_id Value +ImagingLevel3Segments Key,Unique ImagingLevel3Segments_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel3Segments.ImagingLevel3Segments_id Value +ImagingLevel4 Key,Unique ImagingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,imaging,,MC2,matchAtLeastOne ImagingLevel4.ImagingLevel4_id Value +SequencingLevel1 Key,Unique SequencingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel1.SequencingLevel1_id Value +SequencingLevel2 Key,Unique SequencingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel2.SequencingLevel2_id Value +SequencingLevel3 Key,Unique SequencingLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel3.SequencingLevel3_id Value +SequencingLevel4 Key,Unique SequencingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing,,MC2,matchAtLeastOne SequencingLevel4.SequencingLevel4_id Value +SequencingRNALevel1 Key,Unique SequencingRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,sequencing RNA,,MC2,matchAtLeastOne SequencingRNALevel1.SequencingRNALevel1_id Value +10xVisiumRNALevel1 Key,Unique 10xVisiumRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel1.10xVisiumRNALevel1_id Value +10xVisiumRNALevel2 Key,Unique 10xVisiumRNALevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel2.10xVisiumRNALevel2_id Value +10xVisiumRNALevel3 Key,Unique 10xVisiumRNALevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel3.10xVisiumRNALevel3_id Value +10xVisiumRNALevel4 Key,Unique 10xVisiumRNALevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumRNALevel4.10xVisiumRNALevel4_id Value +10xVisiumAuxiliaryFiles Key,Unique 10xVisiumAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.,,,FALSE,,visium,,MC2,matchAtLeastOne 10xVisiumAuxiliaryFiles.10xVisiumAuxiliaryFiles_id Value +Filename,"The path of a file in Synapse, relative to the project. The file associated with the path will be annotated with attributes contained in this sheet.",,,TRUE,,shared,,MC2,str +Workflow Type,Type of computational workflow used to generate the file.,,,FALSE,,shared,,HTAN,str +Workflow Link,Link to documentation or webpage associated with the computational workflow used to generate the file.,,,FALSE,,shared,,HTAN,url +Workflow Parameter Description,Link or text description of flags or options provided to the workflow used to generate the file.,,,FALSE,,shared,,HTAN,str +Software and Version,Name of software used to generate the information contained in the file. String,,,FALSE,,shared,,HTAN,str +Workflow Version,Major version of the workflow (e.g. Cell Ranger v3.1),,,FALSE,,shared,,HTAN,str +Genomic Reference,Exact version of the human genome reference used in the alignment of reads (e.g. GCF_000001405.39),,,TRUE,,shared,,HTAN,str +Genomic Reference URL,Link to human genome sequence; ftp or reference URL will be accepted.,,,TRUE,,shared,,HTAN,url +Genome Annotation URL,Link to the human genome annotation (GTF) file; ftp or reference URL will be accepted.,,,TRUE,,shared,,HTAN,url +DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, +DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str +DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like +DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like +DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like +DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num +DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,,,FALSE,,,,,num +DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,,,FALSE,,,,,num +DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,FALSE,,,,,num +DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,TRUE,,,,,date +DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date +DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like +DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url +DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like +DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ +DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str +DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str +DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, +Study Name,Name of the study,,,TRUE,,,,,str +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str +Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,FALSE,,,,,str +Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int +Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, +Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str +Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str +Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str +Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like +Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, Theme,Themes associated with resources derived from consortia activities,,"Component, Theme Name, Theme Display Name, Theme Description",FALSE,,,,, Theme Name,"Machine readable name of the research theme. (e.g. compuational_resource, drug_resistance_sensitivity).",,,TRUE,,,,, Theme Display Name,"Human readable display name of the research theme. (e.g. Computational Resource, Drug Resistance/Sensitivity)",,,TRUE,,,,, Theme Description,Description of the research theme.,,,TRUE,,,,, -Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,FALSE,,,,biotoolsschema, -Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",,,FALSE,,,,biotoolsschema, -Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,FALSE,,,,schema.org,"list like, url" -Tool Cost,Monetary cost of acquiring the software.,"Commercial, Free of Charge, Free of Charge (With Restrictions)",,FALSE,,,,biotoolsschema, -Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",,,FALSE,,,,schema.org,date -Tool Description,Textual description of the tool.,,,TRUE,,,,biotoolsschema, -Tool Documentation Note,Comment about the documentation.,,,FALSE,,,,biotoolsschema, -Tool Documentation Type,"Type of documentation that is linked to. Multiple values permitted, comma separated.","API Documentation, Citation Instructions, Code of Conduct, Command-Line Options, Contributions Policy, FAQ, General, Governance, Installation Instructions, Other, Quick Start Guide, Release Notes, Terms of Use, Training Material, User Manual",,FALSE,,,,biotoolsschema,list like -Tool Documentation Url,Link to documentation on the web for the tool.,,,FALSE,,,,biotoolsschema, -Tool Download Note,Comment about the download.,,,FALSE,,,,biotoolsschema, -Tool Download Type,"The type of data, information, or system that is obtained when the link is resolved.","API Specification, Binaries, Biological Data, Command-Line Specification, Container File, Downloads Page, Icon, Other, Screenshot, Software Package, Source Code, Test Data, Test Script, Tool Wrapper (CWL), Tool Wrapper (Galaxy), Tool Wrapper (Taverna), Tool wrapper (Other), VM Image",,FALSE,,,,biotoolsschema, -Tool Download Url,Link to download (or repo providing a download) for the software.,,,FALSE,,,,biotoolsschema, -Tool Download Version,Version information (typically a version number) of the software applicable to this download.,,,FALSE,,,,biotoolsschema, -Tool Entity Name,Name of the entities that may be credited,,,FALSE,,,,,list like -Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,TRUE,,,,biotoolsschema,list like -Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,TRUE,,,,biotoolsschema,list like -Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,FALSE,,,,biotoolsschema, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like -Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,TRUE,,,,biotoolsschema,url -Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like -Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like -Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,FALSE,,,,biotoolsschema,list like -Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,biotoolsschema,list like -Tool Link Note,Comment about the link.,,,FALSE,,,,biotoolsschema, -Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,FALSE,,,,biotoolsschema,list like -Tool Link Url,A link of some relevance to the software (URL).,,,FALSE,,,,biotoolsschema, -Tool Name,Canonical tool name provided by the tool developer or service provider.,,,TRUE,,,,biotoolsschema,unique -Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,FALSE,,,,biotoolsschema,list like -Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,TRUE,,,,biotoolsschema,list like -Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like -Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like -Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,FALSE,,,,CWL,list like -Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,TRUE,,,,CWL, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like -Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int -Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,TRUE,,,,schema.org,date -Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,FALSE,,,,biotoolsschema,list like -Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,FALSE,,,,biotoolsschema,list like -Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,FALSE,,,,biotoolsschema, -Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, -ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url -10x Visium Auxiliary Files,"Auxiliary data associated with spot/slide analysis (aligned Images, quality control files, etc) from Spatial Transcriptomics.",,"Component, Filename, 10xVisiumAuxiliaryFiles_id, 10xVisiumRNALevel1 Key, 10xVisiumRNALevel2 Key, 10xVisiumRNALevel3 Key, 10xVisiumRNALevel4 Key, Visium Run ID, Visium File Type, Visium Slide ID, Capture Area, Workflow Version, Workflow Link",FALSE,,visium,"10x Visium RNA Level 1, 10x Visium RNA Level 2, 10x Visium RNA Level 3, 10x Visium RNA Level 4",HTAN, -10xVisiumAuxiliaryFiles_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique -10x Visium RNA Level 1,Files contain raw RNA-seq data associated with spot/slide data.,,"Component, 10xVisiumRNALevel1_id, Filename, Visium Run ID, NGS Read Indicator, Visium Spatial Read1, Visium Spatial Read2, Visium Spatial Library Construction Method, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index, NGS RNA End Bias, NGS RNA Reverse Transcription Primer, NGS Sequencing Platform, Visium Capture Area, Protocol Link, Visium Slide Version, Visium Slide ID, Visium Image Re-orientation, Visium Permeabilization Time, NGS RNA RIN, NGS RNA DV200",FALSE,,,File View,, -10xVisiumRNALevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,,unique -Visium Run ID,A unique identifier for this individual run (typically associated with a single slide) of the spatial transcriptomic processing workflow.,,,TRUE,,visium,,HTAN,unique -Visium Capture Area,"Area (or Capture Area) - One of the either four or two active regions where tissue can be placed on a Visium slide. Each area is intended to contain only one tissue sample. Slide areas are named consecutively from top to bottom: A1, B1, C1, D1 for Visium slides with 6.5 mm Capture Area and A, B for CytAssist slides with 11 mm Capture Area. Both CytAssist slides with 6.5 mm Capture Area and Gateway Slides contain only two slide areas, A1 and D1.","A, B, C, D, A1, B1, C1, D1",,FALSE,,visium,,HTAN,str -Visium Slide Version,Version of imaging slide used. Slide version is critical for the analysis of the sequencing data as different slides have different capture area layouts.,"V1, V2, V3, V4",,TRUE,,visium,,HTAN,str -Visium Spatial Read1,Read 1 content description,"cDNA, Spatial Barcode and UMI",,TRUE,,visium,,HTAN,str -Visium Spatial Read2,Read 2 content description,"cDNA, Spatial Barcode and UMI",,TRUE,,visium,,HTAN,str -Visium Spatial Library Construction Method,Process which results in the creation of a library from fragments of DNA using cloning vectors or oligonucleotides with the role of adaptors [OBI_0000711],"Smart-seq2, Smart-SeqV4, 10xV1.0, 10xV1.1, 10xV2, 10xV3, 10xV3.1, Drop-seq, inDropsV2, inDropsV3, TruDrop, Nextera XT",,TRUE,,visium,,HTAN,str -Visium Slide ID,"For Visium, it is the unique identifier printed on the label of each Visium slide. The serial number starts with V followed by a number which can range between one through five and ends with a dash and a three digit number, such as 123. For CosMx, this refers to the loaded Flow Cell ID. For Xenium, this ID indicates the slide orientation, as it matches the relative location of the ID on the physical Xenium slide.",,,TRUE,,visium,,HTAN,str -Visium Image Re-orientation,"To ensure good fiducial alignment and tissue spots detection, it is important to correct for this shift in orientation.","True, False",,FALSE,,visium,,HTAN,str -Visium Permeabilization Time,Fixed and stained tissue sections are permeabilized for different times. Each Capture Area captures polyadenylated mRNA from the attached tissue section. Measure is provided in minutes.,,,FALSE,,visium,,HTAN,num -10x Visium RNA Level 2,Alignment workflows downstream of Spatial Transcriptomics RNA-seq Level 1.,,"Component,10xVisiumRNALevel2_id,Filename,10xVisiumRNALevel1 Key,Visium UMI Tag,Visium Whitelist Spatial Barcode File Link,Visium Spatial Barcode Tag,Visium Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Visium Run ID,Visium Capture Area",FALSE,,visium,10x Visium RNA Level 1,HTAN, -10xVisiumRNALevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique -Visium UMI Tag,"SAM tag for the UMI field; please provide a valid tag-type pair, consisting of a tag (e.g. UB or UR) and type (e.g. Z) separated by a colon.",,,TRUE,,visium,,HTAN,str -Visium Whitelist Spatial Barcode File Link,Link to file listing all possible spatial barcodes. URL,,,TRUE,,visium,,HTAN,url -Visium Spatial Barcode Tag,"SAM tag for spot barcode field; please provide a valid tag-type pair, consisting of a tag (e.g. CB or CR) and type (e.g. Z) separated by a colon.",,,TRUE,,visium,,HTAN,str -Visium Applied Hard Trimming,Was Hard Trimming applied,"True, False",,TRUE,,visium,,HTAN,str -10x Visium RNA Level 3,Processed data files based on Spatial Transcriptomics RNA-seq Level 2 and Spatial Transcriptomics Auxiliary files.,,"Component, 10xVisiumRNALevel3_id, Filename, 10xVisiumRNALevel2 Key, 10xVisiumAuxiliaryFiles Key, Visium Run ID, Visium File Type, Workflow Version, Workflow Link, Visium Capture Area, Visium Spots under tissue, Visium Mean Reads per Spatial Spot, Visium Median Number Genes per Spatial Spot, NGS Sequencing Coverage, Visium Proportion Reads Mapped, Visium Proportion Reads Mapped to Transcriptome, Visium Median UMI Counts per Spot",FALSE,,visium,10x Visium RNA Level 2,HTAN, -10xVisiumRNALevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique -Visium File Type,The file type generated for the visium experiment.,"reference png, reference jpg, json scale factors, probe dataset csv, qc result html, filtered mex, unfiltered mex, tissue_positions, barcodes, features, fiducial image png, fiducial image jpg, detected image png, detected jpg, high res image, low res image, json scale factors, probe dataset csv",,TRUE,,visium,,HTAN,str -Visium Spots under tissue,The number of barcodes associated with a spot under tissue.,,,TRUE,,visium,,HTAN,num -Visium Mean Reads per Spatial Spot,"The number of reads, both under and outside of tissue, divided by the number of barcodes associated with a spot under tissue.",,,TRUE,,visium,,HTAN,num -Visium Median Number Genes per Spatial Spot,The median number of genes detected per spot under tissue-associated barcode. Detection is defined as the presence of at least 1 UMI count.,,,TRUE,,visium,,HTAN,num -Visium Proportion Reads Mapped,Proportion of mapped reads collected from samtools. Number,,,FALSE,,visium,,HTAN,num -Visium Proportion Reads Mapped to Transcriptome,Fraction of reads that mapped to a unique gene in the transcriptome. The read must be consistent with annotated splice junctions. These reads are considered for UMI counting.,,,TRUE,,visium,,HTAN,num -Visium Median UMI Counts per Spot,The median number of UMI counts per tissue covered spot.,,,TRUE,,visium,,HTAN,num -10x Visium RNA Level 4,Processed data files based on Spatial Transcriptomics RNA-seq Level 3.,,"Component, 10xVisiumRNALevel4_id, Filename, 10xVisiumRNALevel3 Key, Visium Run ID, Workflow Version, Workflow Link, Visium Workflow Type, Visium Workflow Parameters Description",FALSE,,visium,10x Visium RNA Level 3,HTAN, -10xVisiumRNALevel4_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique -Visium Workflow Type,Generic name for the workflow used to analyze the visium data set.,,,TRUE,,visium,,HTAN,str -Visium Workflow Parameters Description,Parameters used to run the workflow.,,,TRUE,,visium,,HTAN,str +Tool Accessibility,Whether there are non-monetary restrictions on accessing an online service.,"Open Access, Open Access (With Restrictions), Restricted Access",,FALSE,,,,biotoolsschema, +Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",,,FALSE,,,,biotoolsschema, +Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",,,FALSE,,,,schema.org,"list like, url" +Tool Cost,Monetary cost of acquiring the software.,"Commercial, Free of Charge, Free of Charge (With Restrictions)",,FALSE,,,,biotoolsschema, +Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",,,FALSE,,,,schema.org,date +Tool Description,Textual description of the tool.,,,TRUE,,,,biotoolsschema, +Tool Documentation Note,Comment about the documentation.,,,FALSE,,,,biotoolsschema, +Tool Documentation Type,"Type of documentation that is linked to. Multiple values permitted, comma separated.","API Documentation, Citation Instructions, Code of Conduct, Command-Line Options, Contributions Policy, FAQ, General, Governance, Installation Instructions, Other, Quick Start Guide, Release Notes, Terms of Use, Training Material, User Manual",,FALSE,,,,biotoolsschema,list like +Tool Documentation Url,Link to documentation on the web for the tool.,,,FALSE,,,,biotoolsschema, +Tool Download Note,Comment about the download.,,,FALSE,,,,biotoolsschema, +Tool Download Type,"The type of data, information, or system that is obtained when the link is resolved.","API Specification, Binaries, Biological Data, Command-Line Specification, Container File, Downloads Page, Icon, Other, Screenshot, Software Package, Source Code, Test Data, Test Script, Tool Wrapper (CWL), Tool Wrapper (Galaxy), Tool Wrapper (Taverna), Tool wrapper (Other), VM Image",,FALSE,,,,biotoolsschema, +Tool Download Url,Link to download (or repo providing a download) for the software.,,,FALSE,,,,biotoolsschema, +Tool Download Version,Version information (typically a version number) of the software applicable to this download.,,,FALSE,,,,biotoolsschema, +Tool Entity Name,Name of the entities that may be credited,,,FALSE,,,,,list like +Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,TRUE,,,,biotoolsschema,list like +Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,TRUE,,,,biotoolsschema,list like +Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,FALSE,,,,biotoolsschema, +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like +Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,TRUE,,,,biotoolsschema,url +Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like +Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like +Tool Language,"Name of programming language the software source code was written in. Multiple values permitted, comma separated.","AWK, ActionScript, Ada, AppleScript, Assembly Language, Bash, C, C#, C++, COBOL, CSS, CWL, ColdFusion, D, Delphi, Dockerfile, Dylan, Eiffel, Elm, Forth, Fortran, Go, Groovy, HTML, Haskell, Icarus, JSP, Java, JavaScript, Julia, LabVIEW, Lisp, Lua, MATLAB, MLXTRAN, Maple, Mathematica, NMTRAN, Netlogo, Nextflow, Ocaml, OpenEdge ABL, Other, PHP, Pascal, Perl, PostScript, PowerShell, Prolog, PyMOL, Python, R, REXX, Racket, Ruby, SAS, SQL, Scala, Scheme, Shell, TeX, Turing, VHDL, Verilog, Visual Basic, WDL, XAML",,FALSE,,,,biotoolsschema,list like +Tool License,"Software or data usage license. Multiple values permitted, comma separated.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,biotoolsschema,list like +Tool Link Note,Comment about the link.,,,FALSE,,,,biotoolsschema, +Tool Link Type,"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.","Discussion Forum, Galaxy Service, Helpdesk, Issue Tracker, Mailing list, Mirror, Other, Repository, Service, Social Media, Software Catalogue, Technical Monitoring",,FALSE,,,,biotoolsschema,list like +Tool Link Url,A link of some relevance to the software (URL).,,,FALSE,,,,biotoolsschema, +Tool Name,Canonical tool name provided by the tool developer or service provider.,,,TRUE,,,,biotoolsschema,unique +Tool Operating System,"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.","Linux, Mac, Windows",,FALSE,,,,biotoolsschema,list like +Tool Operation,"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.","Aggregation, Allele Frequency Distribution Analysis, Analysis, Annotation, Box-Whisker Plot Plotting, Calculation, Cell Migration Analysis, Cell Modelling, Cell Number Quantification, Cell Type Enrichment Analysis, Classification, Clustering, Clustering Profile Plotting, Comparison, Conversion, Copy Number Variation Detection, Correlation, DNA Barcoding, Data Handling, Data Retrieval, Database Search, De Novo Sequencing, Demultiplexing, Differential Gene Expression Profiling, Differential Protein Expression Profiling, Dimensionality Reduction, Editing, Enrichment Analysis, Expression Analysis, Expression Correlation Analysis, Expression Data Visualisation, Expression Profile Clustering, Expression Profile Comparison, Functional Clustering, Gene Expression Profiling, Gene Methylation Analysis, Gene Regulatory Network Analysis, Gene Regulatory Network Prediction, Gene-Set Enrichment Analysis, Generation, Genetic Mapping, Genetic Variation Analysis, Genome Analysis, Genome Annotation, Genome Visualisation, Genotyping, Heat Map Generation, Image Analysis, Imputation, Incident Curve Plotting, Information Retrieval, Linkage Analysis, Mapping, Metabolic Pathway Prediction, Methylation Analysis, Microscope Image Visualisation, Modelling and Simulation, Molecular Dynamics, Network Analysis, Network Visualisation, Nucleic Acid Feature Detection, Nucleic Acid Sequence Analysis, Nucleosome Position Prediction, Ontology Visualisation, Pathway Analysis, Pathway Modelling, Peak Calling, Phylogenetic Analysis, Prediction and Recognition, Principal Component Analysis, Protein Comparison, Protein Function Comparison, Protein Function Prediction, Protein Identification, Protein Interaction Network Analysis, Protein Quantification, Protein-Protein Interaction Analysis, Quantification, Query and Retrieval, RNA Secondary Structure Prediction, RNA-Seq Analysis, RNA-Seq Quantification, Regression Analysis, SNP Annotation, SNP Detection, Scatter Plot Plotting, Sequence Alignment Analysis, Sequence Alignment Comparison, Sequence Analysis, Sequence Annotation, Sequence Classification, Sequence Cluster Visualisation, Sequence Clustering, Sequence Comparison, Sequence Composition Calculation, Sequence Editing, Sequence File Editing, Sequence Read Processing, Sequencing Quality Control, Simulated Gene Expression Data Generation, Sorting, Spectral Analysis, Standardisation and Normalisation, Statistical Calculation, Statistical Inference, Statistical Modelling, Structural Variation Detection, Structure Analysis, Text Mining, Tissue Modelling, Validation, Variant Calling, Variant Classification, Variant Effect Prediction, Visualisation, scRNA-Seq Analysis, Agent-Based Cell Modelling, Not Applicable",,TRUE,,,,biotoolsschema,list like +Tool Output Data,"Type of primary output data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like +Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like +Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,FALSE,,,,CWL,list like +Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,TRUE,,,,CWL, +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like +Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int +Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,TRUE,,,,schema.org,date +Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,FALSE,,,,biotoolsschema,list like +Tool Type,"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.","Bioinformatics Portal, Command-Line Tool, Database Portal, Desktop Application, Library, Notebook, Ontology, Other, Plug-In, SPARQL Endpoint, Script, Serialized Model, Suite, Web API, Web Application, Web Service, Workbench, Workflow",,FALSE,,,,biotoolsschema,list like +Tool Version,Version information (typically a version number) of the software applicable to this entry.,,,FALSE,,,,biotoolsschema, +Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note, Tool Doi, Tool Date Last Modified, Tool Release Date, Tool Package Dependencies, Tool Package Dependencies Present, Tool Compute Requirements, Tool Entity Name, Tool Entity Type, Tool Entity Role",FALSE,,,Study,, +ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,,,TRUE,,,,MC2,url +10x Visium Auxiliary Files,"Auxiliary data associated with spot/slide analysis (aligned Images, quality control files, etc) from Spatial Transcriptomics.",,"Component, Filename, 10xVisiumAuxiliaryFiles_id, 10xVisiumRNALevel1 Key, 10xVisiumRNALevel2 Key, 10xVisiumRNALevel3 Key, 10xVisiumRNALevel4 Key, Visium Run ID, Visium File Type, Visium Slide ID, Capture Area, Workflow Version, Workflow Link",FALSE,,visium,"10x Visium RNA Level 1, 10x Visium RNA Level 2, 10x Visium RNA Level 3, 10x Visium RNA Level 4",HTAN, +10xVisiumAuxiliaryFiles_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique +10x Visium RNA Level 1,Files contain raw RNA-seq data associated with spot/slide data.,,"Component, 10xVisiumRNALevel1_id, Filename, Visium Run ID, NGS Read Indicator, Visium Spatial Read1, Visium Spatial Read2, Visium Spatial Library Construction Method, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index, NGS RNA End Bias, NGS RNA Reverse Transcription Primer, NGS Sequencing Platform, Visium Capture Area, Protocol Link, Visium Slide Version, Visium Slide ID, Visium Image Re-orientation, Visium Permeabilization Time, NGS RNA RIN, NGS RNA DV200",FALSE,,,File View,, +10xVisiumRNALevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,,unique +Visium Run ID,A unique identifier for this individual run (typically associated with a single slide) of the spatial transcriptomic processing workflow.,,,TRUE,,visium,,HTAN,unique +Visium Capture Area,"Area (or Capture Area) - One of the either four or two active regions where tissue can be placed on a Visium slide. Each area is intended to contain only one tissue sample. Slide areas are named consecutively from top to bottom: A1, B1, C1, D1 for Visium slides with 6.5 mm Capture Area and A, B for CytAssist slides with 11 mm Capture Area. Both CytAssist slides with 6.5 mm Capture Area and Gateway Slides contain only two slide areas, A1 and D1.","A, B, C, D, A1, B1, C1, D1",,FALSE,,visium,,HTAN,str +Visium Slide Version,Version of imaging slide used. Slide version is critical for the analysis of the sequencing data as different slides have different capture area layouts.,"V1, V2, V3, V4",,TRUE,,visium,,HTAN,str +Visium Spatial Read1,Read 1 content description,"cDNA, Spatial Barcode and UMI",,TRUE,,visium,,HTAN,str +Visium Spatial Read2,Read 2 content description,"cDNA, Spatial Barcode and UMI",,TRUE,,visium,,HTAN,str +Visium Spatial Library Construction Method,Process which results in the creation of a library from fragments of DNA using cloning vectors or oligonucleotides with the role of adaptors [OBI_0000711],"Smart-seq2, Smart-SeqV4, 10xV1.0, 10xV1.1, 10xV2, 10xV3, 10xV3.1, Drop-seq, inDropsV2, inDropsV3, TruDrop, Nextera XT",,TRUE,,visium,,HTAN,str +Visium Slide ID,"For Visium, it is the unique identifier printed on the label of each Visium slide. The serial number starts with V followed by a number which can range between one through five and ends with a dash and a three digit number, such as 123. For CosMx, this refers to the loaded Flow Cell ID. For Xenium, this ID indicates the slide orientation, as it matches the relative location of the ID on the physical Xenium slide.",,,TRUE,,visium,,HTAN,str +Visium Image Re-orientation,"To ensure good fiducial alignment and tissue spots detection, it is important to correct for this shift in orientation.","True, False",,FALSE,,visium,,HTAN,str +Visium Permeabilization Time,Fixed and stained tissue sections are permeabilized for different times. Each Capture Area captures polyadenylated mRNA from the attached tissue section. Measure is provided in minutes.,,,FALSE,,visium,,HTAN,num +10x Visium RNA Level 2,Alignment workflows downstream of Spatial Transcriptomics RNA-seq Level 1.,,"Component,10xVisiumRNALevel2_id,Filename,10xVisiumRNALevel1 Key,Visium UMI Tag,Visium Whitelist Spatial Barcode File Link,Visium Spatial Barcode Tag,Visium Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Visium Run ID,Visium Capture Area",FALSE,,visium,10x Visium RNA Level 1,HTAN, +10xVisiumRNALevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique +Visium UMI Tag,"SAM tag for the UMI field; please provide a valid tag-type pair, consisting of a tag (e.g. UB or UR) and type (e.g. Z) separated by a colon.",,,TRUE,,visium,,HTAN,str +Visium Whitelist Spatial Barcode File Link,Link to file listing all possible spatial barcodes. URL,,,TRUE,,visium,,HTAN,url +Visium Spatial Barcode Tag,"SAM tag for spot barcode field; please provide a valid tag-type pair, consisting of a tag (e.g. CB or CR) and type (e.g. Z) separated by a colon.",,,TRUE,,visium,,HTAN,str +Visium Applied Hard Trimming,Was Hard Trimming applied,"True, False",,TRUE,,visium,,HTAN,str +10x Visium RNA Level 3,Processed data files based on Spatial Transcriptomics RNA-seq Level 2 and Spatial Transcriptomics Auxiliary files.,,"Component, 10xVisiumRNALevel3_id, Filename, 10xVisiumRNALevel2 Key, 10xVisiumAuxiliaryFiles Key, Visium Run ID, Visium File Type, Workflow Version, Workflow Link, Visium Capture Area, Visium Spots under tissue, Visium Mean Reads per Spatial Spot, Visium Median Number Genes per Spatial Spot, NGS Sequencing Coverage, Visium Proportion Reads Mapped, Visium Proportion Reads Mapped to Transcriptome, Visium Median UMI Counts per Spot",FALSE,,visium,10x Visium RNA Level 2,HTAN, +10xVisiumRNALevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique +Visium File Type,The file type generated for the visium experiment.,"reference png, reference jpg, json scale factors, probe dataset csv, qc result html, filtered mex, unfiltered mex, tissue_positions, barcodes, features, fiducial image png, fiducial image jpg, detected image png, detected jpg, high res image, low res image, json scale factors, probe dataset csv",,TRUE,,visium,,HTAN,str +Visium Spots under tissue,The number of barcodes associated with a spot under tissue.,,,TRUE,,visium,,HTAN,num +Visium Mean Reads per Spatial Spot,"The number of reads, both under and outside of tissue, divided by the number of barcodes associated with a spot under tissue.",,,TRUE,,visium,,HTAN,num +Visium Median Number Genes per Spatial Spot,The median number of genes detected per spot under tissue-associated barcode. Detection is defined as the presence of at least 1 UMI count.,,,TRUE,,visium,,HTAN,num +Visium Proportion Reads Mapped,Proportion of mapped reads collected from samtools. Number,,,FALSE,,visium,,HTAN,num +Visium Proportion Reads Mapped to Transcriptome,Fraction of reads that mapped to a unique gene in the transcriptome. The read must be consistent with annotated splice junctions. These reads are considered for UMI counting.,,,TRUE,,visium,,HTAN,num +Visium Median UMI Counts per Spot,The median number of UMI counts per tissue covered spot.,,,TRUE,,visium,,HTAN,num +10x Visium RNA Level 4,Processed data files based on Spatial Transcriptomics RNA-seq Level 3.,,"Component, 10xVisiumRNALevel4_id, Filename, 10xVisiumRNALevel3 Key, Visium Run ID, Workflow Version, Workflow Link, Visium Workflow Type, Visium Workflow Parameters Description",FALSE,,visium,10x Visium RNA Level 3,HTAN, +10xVisiumRNALevel4_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,visium,,MC2,unique +Visium Workflow Type,Generic name for the workflow used to analyze the visium data set.,,,TRUE,,visium,,HTAN,str +Visium Workflow Parameters Description,Parameters used to run the workflow.,,,TRUE,,visium,,HTAN,str diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 60688258..9d07a0d5 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -704,6 +704,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -29013,6 +29016,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:BiospecimenFixative" + }, { "@id": "bts:DatasetSpecies" }, @@ -29025,9 +29031,6 @@ { "@id": "bts:DSPDatasetSpecies" }, - { - "@id": "bts:BiospecimenFixative" - }, { "@id": "bts:IndividualTumorLymphNodeStage" }, @@ -29691,6 +29694,146 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:NotApplicable", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NotApplicable", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenPathology" + }, + { + "@id": "bts:BiospecimenTreatmentResponse" + }, + { + "@id": "bts:IndividualRecurrenceStatus" + }, + { + "@id": "bts:IndividualTreatmentResponse" + }, + { + "@id": "bts:ModelTreatmentResponse" + }, + { + "@id": "bts:StudyDe-identificationMethodType" + }, + { + "@id": "bts:BiospecimenLastKnownDiseaseStatus" + }, + { + "@id": "bts:FileLevel" + }, + { + "@id": "bts:IndividualLastKnownDiseaseStatus" + }, + { + "@id": "bts:DSPDatasetLevel" + }, + { + "@id": "bts:BiospecimenTumorGrade" + }, + { + "@id": "bts:ImageAssayType" + }, + { + "@id": "bts:IndividualTumorGrade" + }, + { + "@id": "bts:BiospecimenSpecies" + }, + { + "@id": "bts:DatasetSpecies" + }, + { + "@id": "bts:FileSpecies" + }, + { + "@id": "bts:ModelSpecies" + }, + { + "@id": "bts:DSPDatasetSpecies" + }, + { + "@id": "bts:BiospecimenDiseaseType" + }, + { + "@id": "bts:IndividualDiseaseType" + }, + { + "@id": "bts:ModelDiseaseType" + }, + { + "@id": "bts:InstitutionLocationState" + }, + { + "@id": "bts:ToolInputFormat" + }, + { + "@id": "bts:ToolOutputFormat" + }, + { + "@id": "bts:ToolInputData" + }, + { + "@id": "bts:ToolOutputData" + }, + { + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" + }, + { + "@id": "bts:ToolOperation" + }, + { + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" + }, + { + "@id": "bts:BiospecimenPrimaryDiagnosis" + }, + { + "@id": "bts:IndividualPrimaryDiagnosis" + }, + { + "@id": "bts:ModelPrimaryDiagnosis" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Not Applicable", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Opossum", "@type": "rdfs:Class", @@ -30984,131 +31127,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:NotApplicable", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NotApplicable", - "rdfs:subClassOf": [ - { - "@id": "bts:BiospecimenPathology" - }, - { - "@id": "bts:BiospecimenTreatmentResponse" - }, - { - "@id": "bts:IndividualRecurrenceStatus" - }, - { - "@id": "bts:IndividualTreatmentResponse" - }, - { - "@id": "bts:ModelTreatmentResponse" - }, - { - "@id": "bts:StudyDe-identificationMethodType" - }, - { - "@id": "bts:BiospecimenLastKnownDiseaseStatus" - }, - { - "@id": "bts:FileLevel" - }, - { - "@id": "bts:IndividualLastKnownDiseaseStatus" - }, - { - "@id": "bts:DSPDatasetLevel" - }, - { - "@id": "bts:BiospecimenTumorGrade" - }, - { - "@id": "bts:ImageAssayType" - }, - { - "@id": "bts:IndividualTumorGrade" - }, - { - "@id": "bts:BiospecimenDiseaseType" - }, - { - "@id": "bts:IndividualDiseaseType" - }, - { - "@id": "bts:ModelDiseaseType" - }, - { - "@id": "bts:InstitutionLocationState" - }, - { - "@id": "bts:ToolInputFormat" - }, - { - "@id": "bts:ToolOutputFormat" - }, - { - "@id": "bts:ToolInputData" - }, - { - "@id": "bts:ToolOutputData" - }, - { - "@id": "bts:DatasetTissue" - }, - { - "@id": "bts:FileTissue" - }, - { - "@id": "bts:PublicationTissue" - }, - { - "@id": "bts:DSPDatasetTissue" - }, - { - "@id": "bts:ToolOperation" - }, - { - "@id": "bts:DatasetTumorType" - }, - { - "@id": "bts:FileTumorType" - }, - { - "@id": "bts:PublicationTumorType" - }, - { - "@id": "bts:DSPDatasetTumorType" - }, - { - "@id": "bts:BiospecimenPrimaryDiagnosis" - }, - { - "@id": "bts:IndividualPrimaryDiagnosis" - }, - { - "@id": "bts:ModelPrimaryDiagnosis" - }, - { - "@id": "bts:DatasetAssay" - }, - { - "@id": "bts:FileAssay" - }, - { - "@id": "bts:PublicationAssay" - }, - { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Not Applicable", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:NotOtherwiseSpecified", "@type": "rdfs:Class", @@ -212461,6 +212479,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -242900,6 +242921,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -289047,6 +289071,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -314376,6 +314403,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, From 98c50dddda1c1beb9e5e0f41e6d4d03a58924fb1 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 14:00:34 -0700 Subject: [PATCH 049/106] Add Individual Vital Status --- modules/individual/annotationProperty.csv | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/modules/individual/annotationProperty.csv b/modules/individual/annotationProperty.csv index be37fe84..def199ba 100644 --- a/modules/individual/annotationProperty.csv +++ b/modules/individual/annotationProperty.csv @@ -1,5 +1,5 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status",FALSE,,,Study,, +Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status, Individual Vital Status",FALSE,,,Study,, Individual_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Individual Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0,list like Individual Last Known Disease Status,Text term that describes the last known status of an individual.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS Imaging v1.0, @@ -24,3 +24,4 @@ Individual Therapeutic Agent,Text identification of the individual agent(s) used Individual Metastasis Stage,Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"M0, M1, M1a, M1b, M1c, MX, cM0 (i+), Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, Individual Recurrence Status,Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment.,"Yes, Unknown, Not Reported, Not Applicable, Not Allowed to Collect, No, Censored",,FALSE,,,,CDS Imaging v1.0, Individual Treatment Response,Text term that describes the patient's final outcome after the treatment was administered.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, +Individual Vital Status,Text term that describes the patient's current vital status.,"Unspecified, Unknown, Dead, Alive, Not reported",,FALSE,,,,CDS Imaging v1.0/participant, From d9e2fd54bb30ea92dd79ea3f8ae92d2fe408fe67 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 14:00:40 -0700 Subject: [PATCH 050/106] Create vitalStatus.csv --- modules/individual/vitalStatus.csv | 6 ++++++ 1 file changed, 6 insertions(+) create mode 100644 modules/individual/vitalStatus.csv diff --git a/modules/individual/vitalStatus.csv b/modules/individual/vitalStatus.csv new file mode 100644 index 00000000..19bcd133 --- /dev/null +++ b/modules/individual/vitalStatus.csv @@ -0,0 +1,6 @@ +ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +Unspecified,,,,FALSE,,Individual Recurrence Status,,CDS v5.0.4/Diagnosis-vital_status,,,,,, +Unknown,,,,FALSE,,Individual Recurrence Status,,CDS v5.0.4/Diagnosis-vital_status,,,,,, +Dead,,,,FALSE,,Individual Recurrence Status,,CDS v5.0.4/Diagnosis-vital_status,,,,,, +Alive,,,,FALSE,,Individual Recurrence Status,,CDS v5.0.4/Diagnosis-vital_status,,,,,, +Not reported,,,,FALSE,,Individual Recurrence Status,,CDS v5.0.4/Diagnosis-vital_status,,,,,, From 4ba035af19e713c8467b3a6813e3e0e1f78057d6 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 14:00:53 -0700 Subject: [PATCH 051/106] Add valid value mapping for Vital Status --- modules/mapping.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/modules/mapping.yaml b/modules/mapping.yaml index 7ce77692..34bcf858 100644 --- a/modules/mapping.yaml +++ b/modules/mapping.yaml @@ -209,6 +209,8 @@ individual: src: shared/primaryDiagnosisCDS.csv - name: Individual Primary Site src: shared/primaryDiseaseSite.csv + - name: Individual Vital Status + src: individual/vitalStatus.csv institution: - name: Institution Location State From 2208af7313d520d7bfb853ce864dd1b0d9dd9528 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 14:10:32 -0700 Subject: [PATCH 052/106] Update Biospecimen attributes Added Biospecimen Treatment Type; Biospecimen Tumor Status and valid values --- modules/biospecimen/annotationProperty.csv | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/biospecimen/annotationProperty.csv b/modules/biospecimen/annotationProperty.csv index dce81f73..b8260272 100644 --- a/modules/biospecimen/annotationProperty.csv +++ b/modules/biospecimen/annotationProperty.csv @@ -1,8 +1,8 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Treatment Type, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, +Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Tumor Status, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Treatment Type, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, Biospecimen_id,"Unique ID associated with a biosample, used as a key for record linking and updates",,,TRUE,,,,MC2,unique Biospecimen Type Category,The general category of this biospecimen.,"Analyte, Ascites, Blood, Bone Marrow, Cells, Fluids, Mouth Rinse, Sputum, Stool, Tissue, Urine",,TRUE,,,,HTAN, -Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,TRUE,,,,HTAN, +Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,FALSE,,,,HTAN, Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like Biospecimen Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0, Biospecimen Age at Collection,Age at the time the biospecimen was collected. Please provide the unit in field Biospecimen Age at Collection Unit.,,,FALSE,,,,HTAN,num @@ -11,7 +11,7 @@ Biospecimen Disease Type,"The type of tumor associated with the specimen. Multip Biospecimen Tumor Subtype,"The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.",,,FALSE,,,,MC2/STE,str Biospecimen Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, Biospecimen Composition,"The text term used to describe the type(s) of tissue contained in the biospecimen. Multiple values permitted, comma separated.","Additional Primary, Atypia or hyperplasia, Local recurrence, Metastatic, Normal, Normal adjacent, Normal distant, NOS, Not applicable, Not reported, Premalignant, Premalignant - in situ, Primary, Recurrent, Tissue, Tumor post-adjuvant therapy, Tumor post-neoadjuvant therapy, Tumor post-therapy, Tumor specimen from de novo untreated malignancy of the bladder, Unknown, Xenograft",,FALSE,,,,CDS Imaging v1.0,list like -Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,FALSE,,,,CDS Imaging v1.0/multiplex microscopy, +Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,TRUE,,,,CDS Imaging v1.0/multiplex microscopy, Biospecimen Preservation Method,Text term that represents the method used to preserve the sample.,"Cryopreserved, Cryopreservation in liquid nitrogen - dead tissue, Cryopreservation in dry ice - dead tissue, Cryopreservation in liquid nitrogen - live cells, Formalin fixed paraffin embedded - FFPE, Formalin fixed-unbuffered, Formalin fixed-buffered, Fresh, Fresh dissociated and single cell sorted into plates in NP40 buffer, OCT, Snap Frozen, Frozen, Negative 80 Deg C, Liquid Nitrogen, Fresh dissociated, Fresh dissociated and single cell sorted, Fresh dissociated and single cell sorted into plates, Methacarn fixed paraffin embedded - MFPE, unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, Biospecimen Anatomic Site,Text term that represents the name of the primary disease site of the submitted tumor sample.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0/non-DICOM pathology, Biospecimen Site of Resection or Biopsy,The text term used to describe the anatomic site of the resection or biopsy of the patient's malignant disease.,"Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,HTAN, @@ -35,4 +35,4 @@ Biospecimen Primary Site,Primary site in the body associated with the primary di Biospecimen Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, Biospecimen Treatment Response,Text term that describes the treatment response of a model or patient from which this specimen was derived.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, Biospecimen Incidence Type,Text term describing a change in disease status associated with the collection of this specimen. ,"Primary, Progression, Recurrence, Metastasis, Remission, No Disease",,FALSE,,,,CDS v5.0.4/Diagnosis, -Biospecimen Treatment Type,Text term that describes the kind of treatment administered.,,,FALSE,,,,CDS v5.0.4/Treatment,list like +Biospecimen Treatment Type,Text term that describes the kind of treatment administered.,"3-Dimensional Conformal Radiation Therapy, Allogeneic Hematopoietic Stem Cell Transplantation, Autologous Stem Cell Transplantation, Brachytherapy, Cellular Therapy, Chemotherapy, Concurrent Chemoradiation, Conventional Radiotherapy, Electron Beam Radiation Therapy, External Beam Radiation Therapy, High-Dose Rate Brachytherapy, Hormone Therapy, Immunotherapy, Intensity-Modulated Radiation Therapy, Low-Dose Rate Brachytherapy, Not Reported, Organ Transplantation, Palliative Care, Pharmacotherapy, Photon Beam Radiation Therapy, Proton Beam Radiation Therapy, Radiation Therapy, Radiofrequency Ablation, Radiopharmaceutical, Stem Cell Transplant, Stereotactic Body Radiation Therapy, Stereotactic Radiosurgery, Surgical Procedure, Targeted Molecular Therapy, Unknown",,FALSE,,,,CDS v5.0.4/Treatment,list like From c909246889863d9a9a7c45102449070b9f98d87b Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 14:30:45 -0700 Subject: [PATCH 053/106] Update all_valid_values.csv --- all_valid_values.csv | 65 ++++++++++++++++++++++++-------------------- 1 file changed, 35 insertions(+), 30 deletions(-) diff --git a/all_valid_values.csv b/all_valid_values.csv index 8229ed65..ffb55583 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -7932,6 +7932,36 @@ acquisitionMethod,Sentinel node biopsy, acquisitionMethod,Shave biopsy, acquisitionMethod,Surgical Resection, acquisitionMethod,Unknown, +treatmentType,3-Dimensional Conformal Radiation Therapy, +treatmentType,Allogeneic Hematopoietic Stem Cell Transplantation, +treatmentType,Autologous Stem Cell Transplantation, +treatmentType,Brachytherapy, +treatmentType,Cellular Therapy, +treatmentType,Chemotherapy, +treatmentType,Concurrent Chemoradiation, +treatmentType,Conventional Radiotherapy, +treatmentType,Electron Beam Radiation Therapy, +treatmentType,External Beam Radiation Therapy, +treatmentType,High-Dose Rate Brachytherapy, +treatmentType,Hormone Therapy, +treatmentType,Immunotherapy, +treatmentType,Intensity-Modulated Radiation Therapy, +treatmentType,Low-Dose Rate Brachytherapy, +treatmentType,Not Reported, +treatmentType,Organ Transplantation, +treatmentType,Palliative Care, +treatmentType,Pharmacotherapy, +treatmentType,Photon Beam Radiation Therapy, +treatmentType,Proton Beam Radiation Therapy, +treatmentType,Radiation Therapy, +treatmentType,Radiofrequency Ablation, +treatmentType,Radiopharmaceutical, +treatmentType,Stem Cell Transplant, +treatmentType,Stereotactic Body Radiation Therapy, +treatmentType,Stereotactic Radiosurgery, +treatmentType,Surgical Procedure, +treatmentType,Targeted Molecular Therapy, +treatmentType,Unknown, consortium_funding_agency,NIH, dataset_file_format,AVI, dataset_file_format,BAI, @@ -10285,36 +10315,6 @@ lymphStage,N4, lymphStage,NX, lymphStage,Unknown, lymphStage,Not Reported, -treatmentType,3-Dimensional Conformal Radiation Therapy, -treatmentType,Allogeneic Hematopoietic Stem Cell Transplantation, -treatmentType,Autologous Stem Cell Transplantation, -treatmentType,Brachytherapy, -treatmentType,Cellular Therapy, -treatmentType,Chemotherapy, -treatmentType,Concurrent Chemoradiation, -treatmentType,Conventional Radiotherapy, -treatmentType,Electron Beam Radiation Therapy, -treatmentType,External Beam Radiation Therapy, -treatmentType,High-Dose Rate Brachytherapy, -treatmentType,Hormone Therapy, -treatmentType,Immunotherapy, -treatmentType,Intensity-Modulated Radiation Therapy, -treatmentType,Low-Dose Rate Brachytherapy, -treatmentType,Not Reported, -treatmentType,Organ Transplantation, -treatmentType,Palliative Care, -treatmentType,Pharmacotherapy, -treatmentType,Photon Beam Radiation Therapy, -treatmentType,Proton Beam Radiation Therapy, -treatmentType,Radiation Therapy, -treatmentType,Radiofrequency Ablation, -treatmentType,Radiopharmaceutical, -treatmentType,Stem Cell Transplant, -treatmentType,Stereotactic Body Radiation Therapy, -treatmentType,Stereotactic Radiosurgery, -treatmentType,Surgical Procedure, -treatmentType,Targeted Molecular Therapy, -treatmentType,Unknown, metStage,M0, metStage,M1, metStage,M1a, @@ -10331,6 +10331,11 @@ recurrence,Not Applicable, recurrence,Not Allowed to Collect, recurrence,No, recurrence,Censored, +vitalStatus,Unspecified, +vitalStatus,Unknown, +vitalStatus,Dead, +vitalStatus,Alive, +vitalStatus,Not reported, institution_location_state,Alabama, institution_location_state,Alaska, institution_location_state,American Samoa, From 4cdb62fa8a8fd6834b22c9e508f114c67cde26b6 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 14:31:03 -0700 Subject: [PATCH 054/106] Make and build JSON-LD schematic 24.12.1 --- mc2.model.csv | 10 +- mc2.model.jsonld | 1431 ++++++++++++++++++++++++++++------------------ 2 files changed, 865 insertions(+), 576 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 5e1ef0d6..e897974c 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -1,8 +1,8 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, +Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Tumor Status, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Treatment Type, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, Biospecimen_id,"Unique ID associated with a biosample, used as a key for record linking and updates",,,TRUE,,,,MC2,unique Biospecimen Type Category,The general category of this biospecimen.,"Analyte, Ascites, Blood, Bone Marrow, Cells, Fluids, Mouth Rinse, Sputum, Stool, Tissue, Urine",,TRUE,,,,HTAN, -Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,TRUE,,,,HTAN, +Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,FALSE,,,,HTAN, Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like Biospecimen Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0, Biospecimen Age at Collection,Age at the time the biospecimen was collected. Please provide the unit in field Biospecimen Age at Collection Unit.,,,FALSE,,,,HTAN,num @@ -11,7 +11,7 @@ Biospecimen Disease Type,"The type of tumor associated with the specimen. Multip Biospecimen Tumor Subtype,"The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.",,,FALSE,,,,MC2/STE,str Biospecimen Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, Biospecimen Composition,"The text term used to describe the type(s) of tissue contained in the biospecimen. Multiple values permitted, comma separated.","Additional Primary, Atypia or hyperplasia, Local recurrence, Metastatic, Normal, Normal adjacent, Normal distant, NOS, Not applicable, Not reported, Premalignant, Premalignant - in situ, Primary, Recurrent, Tissue, Tumor post-adjuvant therapy, Tumor post-neoadjuvant therapy, Tumor post-therapy, Tumor specimen from de novo untreated malignancy of the bladder, Unknown, Xenograft",,FALSE,,,,CDS Imaging v1.0,list like -Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,FALSE,,,,CDS Imaging v1.0/multiplex microscopy, +Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,TRUE,,,,CDS Imaging v1.0/multiplex microscopy, Biospecimen Preservation Method,Text term that represents the method used to preserve the sample.,"Cryopreserved, Cryopreservation in liquid nitrogen - dead tissue, Cryopreservation in dry ice - dead tissue, Cryopreservation in liquid nitrogen - live cells, Formalin fixed paraffin embedded - FFPE, Formalin fixed-unbuffered, Formalin fixed-buffered, Fresh, Fresh dissociated and single cell sorted into plates in NP40 buffer, OCT, Snap Frozen, Frozen, Negative 80 Deg C, Liquid Nitrogen, Fresh dissociated, Fresh dissociated and single cell sorted, Fresh dissociated and single cell sorted into plates, Methacarn fixed paraffin embedded - MFPE, unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, Biospecimen Anatomic Site,Text term that represents the name of the primary disease site of the submitted tumor sample.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0/non-DICOM pathology, Biospecimen Site of Resection or Biopsy,The text term used to describe the anatomic site of the resection or biopsy of the patient's malignant disease.,"Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,HTAN, @@ -35,6 +35,7 @@ Biospecimen Primary Site,Primary site in the body associated with the primary di Biospecimen Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, Biospecimen Treatment Response,Text term that describes the treatment response of a model or patient from which this specimen was derived.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, Biospecimen Incidence Type,Text term describing a change in disease status associated with the collection of this specimen. ,"Primary, Progression, Recurrence, Metastasis, Remission, No Disease",,FALSE,,,,CDS v5.0.4/Diagnosis, +Biospecimen Treatment Type,Text term that describes the kind of treatment administered.,"3-Dimensional Conformal Radiation Therapy, Allogeneic Hematopoietic Stem Cell Transplantation, Autologous Stem Cell Transplantation, Brachytherapy, Cellular Therapy, Chemotherapy, Concurrent Chemoradiation, Conventional Radiotherapy, Electron Beam Radiation Therapy, External Beam Radiation Therapy, High-Dose Rate Brachytherapy, Hormone Therapy, Immunotherapy, Intensity-Modulated Radiation Therapy, Low-Dose Rate Brachytherapy, Not Reported, Organ Transplantation, Palliative Care, Pharmacotherapy, Photon Beam Radiation Therapy, Proton Beam Radiation Therapy, Radiation Therapy, Radiofrequency Ablation, Radiopharmaceutical, Stem Cell Transplant, Stereotactic Body Radiation Therapy, Stereotactic Radiosurgery, Surgical Procedure, Targeted Molecular Therapy, Unknown",,FALSE,,,,CDS v5.0.4/Treatment,list like Collection,The set of metadata entries associated with a Study. A collection defines which resources should be grouped for sharing and reuse.,,"Component, Collection_id, GrantView Key, Study Key, PublicationView Key, DatasetView Key, ToolView Key, EducationalResource Key, Biospecimen Table Id, Model Table Id, Individual Table Id, Imaging Channel Table Id, GeoMx ROI Table Id",FALSE,,,,, Collection_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Biospecimen Table Id,The Synapse Id corresponding to a Biospecimen metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" @@ -252,7 +253,7 @@ Imaging Level 4,Derived imaging data or object by feature array,,"Component, Ima ImagingLevel4_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, Image Number of Features,The number of features (eg channels) described,,,TRUE,,,,HTAN,num Image Summary Statistic,Function used to summarize object/feature intensity,"Mean, Median, Not Specified",,TRUE,,,,HTAN, -Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status",FALSE,,,Study,, +Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status, Individual Vital Status",FALSE,,,Study,, Individual_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Individual Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0,list like Individual Last Known Disease Status,Text term that describes the last known status of an individual.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS Imaging v1.0, @@ -277,6 +278,7 @@ Individual Therapeutic Agent,Text identification of the individual agent(s) used Individual Metastasis Stage,Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"M0, M1, M1a, M1b, M1c, MX, cM0 (i+), Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, Individual Recurrence Status,Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment.,"Yes, Unknown, Not Reported, Not Applicable, Not Allowed to Collect, No, Censored",,FALSE,,,,CDS Imaging v1.0, Individual Treatment Response,Text term that describes the patient's final outcome after the treatment was administered.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, +Individual Vital Status,Text term that describes the patient's current vital status.,"Unspecified, Unknown, Dead, Alive, Not reported",,FALSE,,,,CDS Imaging v1.0/participant, Institution,Institutions participating in consortia activities,,"Component, Institution Name, Institution Full Name, Institution Alias, Institution Location State, Institution Location City, Rorid",FALSE,,,,, Institution Name,"Machine readable name of the institution. (e.g. ArizonaStatUniversity, BostonUniversity, etc.)",,,TRUE,,,,, Institution Full Name,"Human readable, full name of the institution. (e.g. Arizona State University, Boston University, etc.)",,,TRUE,,,,, diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 9d07a0d5..24197aec 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -55,6 +55,9 @@ { "@id": "bts:BiospecimenType" }, + { + "@id": "bts:BiospecimenTumorStatus" + }, { "@id": "bts:BiospecimenAcquisitionMethod" }, @@ -127,6 +130,9 @@ { "@id": "bts:BiospecimenCollectionSite" }, + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:BiospecimenTherapeuticAgent" }, @@ -506,6 +512,40 @@ } ], "sms:displayName": "Biospecimen Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BiospecimenTumorStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Normal or Tumor Sample Pathology Indicator", + "rdfs:label": "BiospecimenTumorStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Tumor" + }, + { + "@id": "bts:Normal" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:Peritumoral" + }, + { + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Biospecimen Tumor Status", "sms:required": "sms:true", "sms:validationRules": [] }, @@ -13882,6 +13922,117 @@ "str" ] }, + { + "@id": "bts:BiospecimenTreatmentType", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the kind of treatment administered.", + "rdfs:label": "BiospecimenTreatmentType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:3-DimensionalConformalRadiationTherapy" + }, + { + "@id": "bts:AllogeneicHematopoieticStemCellTransplantation" + }, + { + "@id": "bts:AutologousStemCellTransplantation" + }, + { + "@id": "bts:Brachytherapy" + }, + { + "@id": "bts:CellularTherapy" + }, + { + "@id": "bts:Chemotherapy" + }, + { + "@id": "bts:ConcurrentChemoradiation" + }, + { + "@id": "bts:ConventionalRadiotherapy" + }, + { + "@id": "bts:ElectronBeamRadiationTherapy" + }, + { + "@id": "bts:ExternalBeamRadiationTherapy" + }, + { + "@id": "bts:High-DoseRateBrachytherapy" + }, + { + "@id": "bts:HormoneTherapy" + }, + { + "@id": "bts:Immunotherapy" + }, + { + "@id": "bts:Intensity-ModulatedRadiationTherapy" + }, + { + "@id": "bts:Low-DoseRateBrachytherapy" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:OrganTransplantation" + }, + { + "@id": "bts:PalliativeCare" + }, + { + "@id": "bts:Pharmacotherapy" + }, + { + "@id": "bts:PhotonBeamRadiationTherapy" + }, + { + "@id": "bts:ProtonBeamRadiationTherapy" + }, + { + "@id": "bts:RadiationTherapy" + }, + { + "@id": "bts:RadiofrequencyAblation" + }, + { + "@id": "bts:Radiopharmaceutical" + }, + { + "@id": "bts:StemCellTransplant" + }, + { + "@id": "bts:StereotacticBodyRadiationTherapy" + }, + { + "@id": "bts:StereotacticRadiosurgery" + }, + { + "@id": "bts:SurgicalProcedure" + }, + { + "@id": "bts:TargetedMolecularTherapy" + }, + { + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Biospecimen Treatment Type", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, { "@id": "bts:BiospecimenTherapeuticAgent", "@type": "rdfs:Class", @@ -27562,6 +27713,9 @@ }, { "@id": "bts:IndividualLastKnownDiseaseStatus" + }, + { + "@id": "bts:IndividualVitalStatus" } ], "sms:validationRules": [] @@ -28959,6 +29113,9 @@ { "@id": "bts:IndividualRecurrenceStatus" }, + { + "@id": "bts:IndividualVitalStatus" + }, { "@id": "bts:BiospecimenLastKnownDiseaseStatus" }, @@ -29034,6 +29191,9 @@ { "@id": "bts:IndividualTumorLymphNodeStage" }, + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:IndividualTreatmentType" }, @@ -29153,6 +29313,9 @@ { "@id": "bts:IndividualTumorGrade" }, + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:IndividualTreatmentType" }, @@ -30014,6 +30177,9 @@ "rdfs:comment": "TBD", "rdfs:label": "Unspecified", "rdfs:subClassOf": [ + { + "@id": "bts:IndividualVitalStatus" + }, { "@id": "bts:IndividualGender" }, @@ -31726,6 +31892,9 @@ "rdfs:comment": "TBD", "rdfs:label": "Notreported", "rdfs:subClassOf": [ + { + "@id": "bts:IndividualVitalStatus" + }, { "@id": "bts:BiospecimenComposition" }, @@ -31923,40 +32092,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:BiospecimenTumorStatus", - "@type": "rdfs:Class", - "rdfs:comment": "Normal or Tumor Sample Pathology Indicator", - "rdfs:label": "BiospecimenTumorStatus", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Tumor" - }, - { - "@id": "bts:Normal" - }, - { - "@id": "bts:NotReported" - }, - { - "@id": "bts:Peritumoral" - }, - { - "@id": "bts:Unknown" - } - ], - "sms:displayName": "Biospecimen Tumor Status", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Peritumoral", "@type": "rdfs:Class", @@ -87628,6 +87763,9 @@ "rdfs:comment": "TBD", "rdfs:label": "Chemotherapy", "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:IndividualTreatmentType" }, @@ -105827,6 +105965,9 @@ "rdfs:comment": "TBD", "rdfs:label": "HormoneTherapy", "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:IndividualTreatmentType" }, @@ -200805,6 +200946,622 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:3-DimensionalConformalRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "3-DimensionalConformalRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "3-Dimensional Conformal Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AllogeneicHematopoieticStemCellTransplantation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AllogeneicHematopoieticStemCellTransplantation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Allogeneic Hematopoietic Stem Cell Transplantation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AutologousStemCellTransplantation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AutologousStemCellTransplantation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Autologous Stem Cell Transplantation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Brachytherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Brachytherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Brachytherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CellularTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CellularTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cellular Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ConcurrentChemoradiation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ConcurrentChemoradiation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Concurrent Chemoradiation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ConventionalRadiotherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ConventionalRadiotherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Conventional Radiotherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ElectronBeamRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ElectronBeamRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Electron Beam Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ExternalBeamRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ExternalBeamRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "External Beam Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:High-DoseRateBrachytherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "High-DoseRateBrachytherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "High-Dose Rate Brachytherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Immunotherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Immunotherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantThemeName" + }, + { + "@id": "bts:ResourceTopic" + }, + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Immunotherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Intensity-ModulatedRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Intensity-ModulatedRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Intensity-Modulated Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Low-DoseRateBrachytherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Low-DoseRateBrachytherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": 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"sms:validationRules": [] + }, + { + "@id": "bts:StemCellTransplant", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "StemCellTransplant", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Stem Cell Transplant", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:StereotacticBodyRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "StereotacticBodyRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Stereotactic Body Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:StereotacticRadiosurgery", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "StereotacticRadiosurgery", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Stereotactic Radiosurgery", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SurgicalProcedure", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SurgicalProcedure", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Surgical Procedure", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:TargetedMolecularTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "TargetedMolecularTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Targeted Molecular Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Collection", "@type": "rdfs:Class", @@ -212038,44 +212795,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:Immunotherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Immunotherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:GrantThemeName" - }, - { - "@id": "bts:ResourceTopic" - }, - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - }, - { - "@id": "bts:DatasetAssay" - }, - { - "@id": "bts:FileAssay" - }, - { - "@id": "bts:PublicationAssay" - }, - { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Immunotherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:ViralTransduction", "@type": "rdfs:Class", @@ -280748,6 +281467,40 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:IndividualVitalStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the patient's current vital status.", + "rdfs:label": "IndividualVitalStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Unspecified" + }, + { + "@id": "bts:Unknown" + }, + { + "@id": "bts:Dead" + }, + { + "@id": "bts:Alive" + }, + { + "@id": "bts:Notreported" + } + ], + "sms:displayName": "Individual Vital Status", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:T0", "@type": "rdfs:Class", @@ -281734,506 +282487,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:3-DimensionalConformalRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "3-DimensionalConformalRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "3-Dimensional Conformal Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AllogeneicHematopoieticStemCellTransplantation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AllogeneicHematopoieticStemCellTransplantation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Allogeneic Hematopoietic Stem Cell Transplantation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AutologousStemCellTransplantation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AutologousStemCellTransplantation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Autologous Stem Cell Transplantation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Brachytherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Brachytherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Brachytherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CellularTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CellularTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Cellular Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConcurrentChemoradiation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ConcurrentChemoradiation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Concurrent Chemoradiation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConventionalRadiotherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ConventionalRadiotherapy", - "rdfs:subClassOf": [ - { 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"schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "External Beam Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:High-DoseRateBrachytherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "High-DoseRateBrachytherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "High-Dose Rate Brachytherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Intensity-ModulatedRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Intensity-ModulatedRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": 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"@id": "bts:StemCellTransplant", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "StemCellTransplant", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Stem Cell Transplant", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StereotacticBodyRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "StereotacticBodyRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Stereotactic Body Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StereotacticRadiosurgery", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "StereotacticRadiosurgery", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Stereotactic Radiosurgery", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SurgicalProcedure", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SurgicalProcedure", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Surgical Procedure", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TargetedMolecularTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TargetedMolecularTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Targeted Molecular Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:M0", "@type": "rdfs:Class", @@ -282387,6 +282640,40 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:Dead", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Dead", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualVitalStatus" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Dead", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Alive", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Alive", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualVitalStatus" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alive", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Institution", "@type": "rdfs:Class", From 8d6689d8a9ea6a8361ef9a9bada499fb7c851c79 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 15:56:38 -0700 Subject: [PATCH 055/106] Update annotationProperty.csv --- modules/individual/annotationProperty.csv | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/individual/annotationProperty.csv b/modules/individual/annotationProperty.csv index def199ba..01d6677f 100644 --- a/modules/individual/annotationProperty.csv +++ b/modules/individual/annotationProperty.csv @@ -3,7 +3,7 @@ Individual,Information about models and individuals from which biospecimen(s) we Individual_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Individual Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0,list like Individual Last Known Disease Status,Text term that describes the last known status of an individual.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS Imaging v1.0, -Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0,str +Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,CDS Imaging v1.0,str Individual Disease Type,"The type of tumor associated with the specimen. Multiple values permitted, comma separated.","Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,CDS Imaging v1.0, Individual Primary Diagnosis,"Text term used to describe the patient's histologic diagnosis, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,TRUE,,,,CDS Metadata v1.3.3/Diagnosis, Individual Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS Imaging v1.0/Diagnosis, @@ -11,7 +11,7 @@ Individual Tumor Subtype,"The subtype related to the scientific determination an Individual Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, Individual Site of Origin,"The text term used to describe the anatomic site of origin, of the patient's malignant disease.","Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,CDS Imaging v1.0, Individual Age at Diagnosis,"Age at the time the individual was diagnosed, expressed in years.",,,FALSE,,,,CDS Imaging v1.0,num -Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,TRUE,,,,CDS Imaging v1.0/participant,str +Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,FALSE,,,,CDS Imaging v1.0/participant,str Individual dbGaP Subject Id,The identifer assigned to the participant by dbGap,,,FALSE,,,,CDS Imaging v1.0,str Individual Days to Last Followup,Number of days between the dates used for index and last follow-up,,,FALSE,,,,CDS Imaging v1.0,int Individual Primary Tumor Stage,Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"Not Reported, T0, T1, T1a, T1a1, T1a2, T1b, T1b1, T1b2, T1c, T1mi, T2, T2a, T2a1, T2a2, T2b, T2c, T2d, T3, T3a, T3b, T3c, T3d, T4, T4a, T4b, T4c, T4d, T4e, T5, Ta, Tis, Tis (DCIS), Tis (LCIS), Tis (Paget's), TX, Unknown",,FALSE,,,,CDS Imaging v1.0, From c91388161defcf91f114d0981ca1445b86d792a7 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 17 Mar 2025 17:03:54 -0700 Subject: [PATCH 056/106] Make and build model schematic 24.12.1 --- mc2.model.csv | 6 +++--- mc2.model.jsonld | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 913c730a..2f96954a 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -257,7 +257,7 @@ Individual,Information about models and individuals from which biospecimen(s) we Individual_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Individual Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0,list like Individual Last Known Disease Status,Text term that describes the last known status of an individual.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS Imaging v1.0, -Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0,str +Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,CDS Imaging v1.0,str Individual Disease Type,"The type of tumor associated with the specimen. Multiple values permitted, comma separated.","Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,CDS Imaging v1.0, Individual Primary Diagnosis,"Text term used to describe the patient's histologic diagnosis, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,TRUE,,,,CDS Metadata v1.3.3/Diagnosis, Individual Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS Imaging v1.0/Diagnosis, @@ -265,7 +265,7 @@ Individual Tumor Subtype,"The subtype related to the scientific determination an Individual Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, Individual Site of Origin,"The text term used to describe the anatomic site of origin, of the patient's malignant disease.","Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,CDS Imaging v1.0, Individual Age at Diagnosis,"Age at the time the individual was diagnosed, expressed in years.",,,FALSE,,,,CDS Imaging v1.0,num -Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,TRUE,,,,CDS Imaging v1.0/participant,str +Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,FALSE,,,,CDS Imaging v1.0/participant,str Individual dbGaP Subject Id,The identifer assigned to the participant by dbGap,,,FALSE,,,,CDS Imaging v1.0,str Individual Days to Last Followup,Number of days between the dates used for index and last follow-up,,,FALSE,,,,CDS Imaging v1.0,int Individual Primary Tumor Stage,Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"Not Reported, T0, T1, T1a, T1a1, T1a2, T1b, T1b1, T1b2, T1c, T1mi, T2, T2a, T2a1, T2a2, T2b, T2c, T2d, T3, T3a, T3b, T3c, T3d, T4, T4a, T4b, T4c, T4d, T4e, T5, Ta, Tis, Tis (DCIS), Tis (LCIS), Tis (Paget's), TX, Unknown",,FALSE,,,,CDS Imaging v1.0, @@ -469,7 +469,7 @@ Study De-identification Method Description,Description of the process of removin Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,CDS/collection, -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,DUOplus,list like Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,"Agreement, Attestation, Award, Other",,FALSE,,,,DUOplus,list like diff --git a/mc2.model.jsonld b/mc2.model.jsonld index bea4f3ef..d6a79c39 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -261070,7 +261070,7 @@ } ], "sms:displayName": "Individual Sex", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "str" ] @@ -261109,7 +261109,7 @@ } ], "sms:displayName": "Individual Gender", - "sms:required": "sms:true", + "sms:required": "sms:false", "sms:validationRules": [ "str" ] From 7ae2807c73d4c8963760575628b9fc8a8f33b4a5 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 18 Mar 2025 13:56:38 -0700 Subject: [PATCH 057/106] Update annotationProperty.csv Make Model Sex a required attribute, since it is required for CRDC submission --- modules/model/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/model/annotationProperty.csv b/modules/model/annotationProperty.csv index 8b3521ad..96bdac60 100644 --- a/modules/model/annotationProperty.csv +++ b/modules/model/annotationProperty.csv @@ -3,7 +3,7 @@ Model,Information about a non-human organism or any cell line from which experim Model_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,,unique Model Age,"The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)",,,FALSE,,,,,num Model Age Unit,The unit corresponding to the age provided for this model.,,,FALSE,,,,,str -Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,, +Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,, Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like From 1c00fa3cdf4c6daf2d8ef06b3e97158c8cb6f485 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 18 Mar 2025 14:40:44 -0700 Subject: [PATCH 058/106] Make and build model schematic 24.12.1 --- mc2.model.csv | 2 +- mc2.model.jsonld | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 2f96954a..3f61d1d4 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -290,7 +290,7 @@ Model,Information about a non-human organism or any cell line from which experim Model_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,,unique Model Age,"The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)",,,FALSE,,,,,num Model Age Unit,The unit corresponding to the age provided for this model.,,,FALSE,,,,,str -Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,, +Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,, Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like diff --git a/mc2.model.jsonld b/mc2.model.jsonld index d6a79c39..b8284322 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -284090,7 +284090,7 @@ } ], "sms:displayName": "Model Sex", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [] }, { From 2fda27a545dbe983654e98ea2c86ed2046c19ed2 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 18 Mar 2025 15:21:13 -0700 Subject: [PATCH 059/106] Remove out-of-date templates and JSON schemas --- .../cckp_datacatalog.jsonld | 0 .../mc2.10xVisiumAuxiliaryFiles.schema.json | 147 - .../mc2.10xVisiumRNALevel1.schema.json | 307 - .../mc2.10xVisiumRNALevel2.schema.json | 197 - .../mc2.10xVisiumRNALevel3.schema.json | 206 - .../mc2.10xVisiumRNALevel4.schema.json | 135 - json_schemas/mc2.Biospecimen.schema.json | 9873 ----------------- json_schemas/mc2.DataDSP.schema.json | 933 -- json_schemas/mc2.DatasetView.schema.json | 915 -- .../mc2.EducationalResource.schema.json | 930 -- json_schemas/mc2.FileView.schema.json | 924 -- json_schemas/mc2.GrantView.schema.json | 310 - json_schemas/mc2.ImagingChannel.schema.json | 200 - json_schemas/mc2.ImagingLevel1.schema.json | 62 - json_schemas/mc2.ImagingLevel2.schema.json | 111 - .../mc2.ImagingLevel3Image.schema.json | 84 - .../mc2.ImagingLevel3Segments.schema.json | 58 - json_schemas/mc2.ImagingLevel4.schema.json | 63 - json_schemas/mc2.Individual.schema.json | 8057 -------------- json_schemas/mc2.Model.schema.json | 7523 ------------- ...tringGeoMXROISegmentAnnotation.schema.json | 73 - ....NanoStringGeoMxAuxiliaryFiles.schema.json | 28 - .../mc2.NanoStringGeoMxDSPImaging.schema.json | 37 - .../mc2.NanoStringGeoMxDSPLevel1.schema.json | 161 - .../mc2.NanoStringGeoMxDSPLevel2.schema.json | 162 - .../mc2.NanoStringGeoMxDSPLevel3.schema.json | 48 - json_schemas/mc2.PersonView.schema.json | 113 - json_schemas/mc2.ProjectView.schema.json | 53 - json_schemas/mc2.PublicationView.schema.json | 790 -- json_schemas/mc2.SequencingLevel1.schema.json | 228 - json_schemas/mc2.SequencingLevel2.schema.json | 231 - json_schemas/mc2.SequencingLevel3.schema.json | 44 - json_schemas/mc2.Study.schema.json | 110 - json_schemas/mc2.ToolView.schema.json | 1467 --- templates/10xVisiumAuxiliaryFiles.csv | 2 - templates/10xVisiumRNALevel1.csv | 2 - templates/10xVisiumRNALevel2.csv | 2 - templates/10xVisiumRNALevel3.csv | 2 - templates/10xVisiumRNALevel4.csv | 2 - ...mSpatialTranscriptomics-AuxiliaryFiles.csv | 2 - ...umSpatialTranscriptomics-RNA-seqLevel1.csv | 2 - ...umSpatialTranscriptomics-RNA-seqLevel2.csv | 2 - ...umSpatialTranscriptomics-RNA-seqLevel3.csv | 2 - ...umSpatialTranscriptomics-RNA-seqLevel4.csv | 2 - templates/Biospecimen.csv | 2 - templates/DataDSP.csv | 2 - templates/DatasetView.csv | 2 - templates/EducationalResource.csv | 2 - templates/FileView.csv | 2 - templates/GrantView.csv | 2 - templates/ImagingChannel.csv | 2 - templates/ImagingLevel1.csv | 2 - templates/ImagingLevel2.csv | 2 - templates/ImagingLevel3Image.csv | 2 - templates/ImagingLevel3Segments.csv | 2 - templates/ImagingLevel4.csv | 2 - templates/Individual.csv | 2 - templates/Model.csv | 2 - .../NanoStringGeoMXROISegmentAnnotation.csv | 2 - templates/NanoStringGeoMxAuxiliaryFiles.csv | 2 - templates/NanoStringGeoMxDSPImaging.csv | 2 - templates/NanoStringGeoMxDSPImagingLevel2.csv | 2 - templates/NanoStringGeoMxDSPLevel1.csv | 2 - templates/NanoStringGeoMxDSPLevel2.csv | 2 - templates/NanoStringGeoMxDSPLevel3.csv | 2 - templates/PersonView.csv | 2 - templates/ProjectView.csv | 2 - templates/PublicationView.csv | 2 - templates/SequencingLevel1.csv | 2 - templates/SequencingLevel2.csv | 2 - templates/SequencingLevel3.csv | 2 - templates/SequencingRNALevel1.csv | 2 - templates/Study.csv | 2 - templates/ToolView.csv | 2 - 74 files changed, 34660 deletions(-) rename {templates => json_schemas}/cckp_datacatalog.jsonld (100%) delete mode 100644 json_schemas/mc2.10xVisiumAuxiliaryFiles.schema.json delete mode 100644 json_schemas/mc2.10xVisiumRNALevel1.schema.json delete mode 100644 json_schemas/mc2.10xVisiumRNALevel2.schema.json delete mode 100644 json_schemas/mc2.10xVisiumRNALevel3.schema.json delete mode 100644 json_schemas/mc2.10xVisiumRNALevel4.schema.json delete mode 100644 json_schemas/mc2.Biospecimen.schema.json delete mode 100644 json_schemas/mc2.DataDSP.schema.json delete mode 100644 json_schemas/mc2.DatasetView.schema.json delete mode 100644 json_schemas/mc2.EducationalResource.schema.json delete mode 100644 json_schemas/mc2.FileView.schema.json delete mode 100644 json_schemas/mc2.GrantView.schema.json delete mode 100644 json_schemas/mc2.ImagingChannel.schema.json delete mode 100644 json_schemas/mc2.ImagingLevel1.schema.json delete mode 100644 json_schemas/mc2.ImagingLevel2.schema.json delete mode 100644 json_schemas/mc2.ImagingLevel3Image.schema.json delete mode 100644 json_schemas/mc2.ImagingLevel3Segments.schema.json delete mode 100644 json_schemas/mc2.ImagingLevel4.schema.json delete mode 100644 json_schemas/mc2.Individual.schema.json delete mode 100644 json_schemas/mc2.Model.schema.json delete mode 100644 json_schemas/mc2.NanoStringGeoMXROISegmentAnnotation.schema.json delete mode 100644 json_schemas/mc2.NanoStringGeoMxAuxiliaryFiles.schema.json delete mode 100644 json_schemas/mc2.NanoStringGeoMxDSPImaging.schema.json delete mode 100644 json_schemas/mc2.NanoStringGeoMxDSPLevel1.schema.json delete mode 100644 json_schemas/mc2.NanoStringGeoMxDSPLevel2.schema.json delete mode 100644 json_schemas/mc2.NanoStringGeoMxDSPLevel3.schema.json delete mode 100644 json_schemas/mc2.PersonView.schema.json delete mode 100644 json_schemas/mc2.ProjectView.schema.json delete mode 100644 json_schemas/mc2.PublicationView.schema.json delete mode 100644 json_schemas/mc2.SequencingLevel1.schema.json delete mode 100644 json_schemas/mc2.SequencingLevel2.schema.json delete mode 100644 json_schemas/mc2.SequencingLevel3.schema.json delete mode 100644 json_schemas/mc2.Study.schema.json delete mode 100644 json_schemas/mc2.ToolView.schema.json delete mode 100644 templates/10xVisiumAuxiliaryFiles.csv delete mode 100644 templates/10xVisiumRNALevel1.csv delete mode 100644 templates/10xVisiumRNALevel2.csv delete mode 100644 templates/10xVisiumRNALevel3.csv delete mode 100644 templates/10xVisiumRNALevel4.csv delete mode 100644 templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv delete mode 100644 templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv delete mode 100644 templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv delete mode 100644 templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv delete mode 100644 templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv delete mode 100644 templates/Biospecimen.csv delete mode 100644 templates/DataDSP.csv delete mode 100644 templates/DatasetView.csv delete mode 100644 templates/EducationalResource.csv delete mode 100644 templates/FileView.csv delete mode 100644 templates/GrantView.csv delete mode 100644 templates/ImagingChannel.csv delete mode 100644 templates/ImagingLevel1.csv delete mode 100644 templates/ImagingLevel2.csv delete mode 100644 templates/ImagingLevel3Image.csv delete mode 100644 templates/ImagingLevel3Segments.csv delete mode 100644 templates/ImagingLevel4.csv delete mode 100644 templates/Individual.csv delete mode 100644 templates/Model.csv delete mode 100644 templates/NanoStringGeoMXROISegmentAnnotation.csv delete mode 100644 templates/NanoStringGeoMxAuxiliaryFiles.csv delete mode 100644 templates/NanoStringGeoMxDSPImaging.csv delete mode 100644 templates/NanoStringGeoMxDSPImagingLevel2.csv delete mode 100644 templates/NanoStringGeoMxDSPLevel1.csv delete mode 100644 templates/NanoStringGeoMxDSPLevel2.csv delete mode 100644 templates/NanoStringGeoMxDSPLevel3.csv delete mode 100644 templates/PersonView.csv delete mode 100644 templates/ProjectView.csv delete mode 100644 templates/PublicationView.csv delete mode 100644 templates/SequencingLevel1.csv delete mode 100644 templates/SequencingLevel2.csv delete mode 100644 templates/SequencingLevel3.csv delete mode 100644 templates/SequencingRNALevel1.csv delete mode 100644 templates/Study.csv delete mode 100644 templates/ToolView.csv diff --git a/templates/cckp_datacatalog.jsonld b/json_schemas/cckp_datacatalog.jsonld similarity index 100% rename from templates/cckp_datacatalog.jsonld rename to json_schemas/cckp_datacatalog.jsonld diff --git a/json_schemas/mc2.10xVisiumAuxiliaryFiles.schema.json b/json_schemas/mc2.10xVisiumAuxiliaryFiles.schema.json deleted file mode 100644 index 6681755b..00000000 --- a/json_schemas/mc2.10xVisiumAuxiliaryFiles.schema.json +++ /dev/null @@ -1,147 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Capture Area": {}, - "10xVisiumAuxiliaryFiles_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Run ID": {}, - "Workflow Version": {}, - "10xVisiumRNALevel3 Key": {}, - "10xVisiumRNALevel1 Key": {}, - "Slide ID": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Workflow Link": {}, - "10xVisiumRNALevel2 Key": {}, - "File Format": { - "enum": [ - "GCT", - "FIG", - "FASTQ", - "HDF5", - "SCN", - "R File Format", - "AVI", - "DB", - "TDF", - "cel", - "PKL", - "LIF", - "FASTA", - "RPROJ", - "XML", - "JPG", - "RAW", - "TAR Format", - "RTF", - "unspecified", - "SF", - "CLS", - "pptx", - "CSV", - "xls", - "FREQ", - "DAE", - "MATLAB script", - "Pending Annotation", - "MTX", - "TSV", - "MGF", - "TXT", - "H5AD", - "H5", - "GFF3", - "bed12", - "JSON", - "FCS", - "cloupe", - "MAT", - "BAI", - "ROUT", - "STAT", - "VCF", - "GTF", - "PZFX", - "PNG", - "SGI", - "TIFF", - "RDS", - "Python Script", - "BIGWIG", - "BAM", - "IDAT", - "BED", - "GCG", - "WIG", - "mzIdentML", - "mzXML", - "docx", - "DS_Store", - "SVS", - "CHP", - "bedgraph", - "PDF", - "GCTx", - "MAP", - "HDF", - "maf", - "COOL", - "BPM", - "SRA", - "HTML", - "rcc", - "ZIP", - "GZIP Format", - "xlsx", - "MSF", - "CDS" - ] - }, - "10xVisiumRNALevel4 Key": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Biospecimen Key": {}, - "Visium File Type": { - "enum": [ - "reference png", - "json scale factors", - "reference jpg", - "filtered mex", - "fiducial image png", - "tissue_positions", - "features", - "qc result html", - "fiducial image jpg", - "detected jpg", - "detected image png", - "barcodes", - "low res image", - "unfiltered mex", - "probe dataset csv", - "high res image" - ] - } - }, - "required": [ - "10xVisiumAuxiliaryFiles_id", - "Filename", - "File Format", - "Component", - "Visium File Type" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.10xVisiumRNALevel1.schema.json b/json_schemas/mc2.10xVisiumRNALevel1.schema.json deleted file mode 100644 index 6ee03425..00000000 --- a/json_schemas/mc2.10xVisiumRNALevel1.schema.json +++ /dev/null @@ -1,307 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NGS Reverse Transcription Primer": { - "enum": [ - "Random", - "Feature barcoding", - "Oligo-dT", - "Poly-dT" - ] - }, - "10xVisiumRNALevel1_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS RIN": {}, - "NGS Sequencing Library Construction Days from Index": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Run ID": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Spatial Library Construction Method": { - "enum": [ - "Drop-seq", - "10xV3.1", - "Smart-SeqV4", - "10xV1.1", - "TruDrop", - "10xV1.0", - "Nextera XT", - "inDropsV3", - "10xV2", - "10xV3", - "inDropsV2", - "Smart-seq2" - ] - }, - "Visium Capture Area": { - "enum": [ - "C", - "D1", - "B", - "A1", - "C1", - "D", - "A", - "B1", - "" - ] - }, - "Visium Slide ID": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "File Format": { - "enum": [ - "JSON", - "Python Script", - "STAT", - "JPG", - "PKL", - "CSV", - "GCTx", - "bedgraph", - "Pending Annotation", - "GCT", - "ROUT", - "unspecified", - "xlsx", - "GFF3", - "rcc", - "VCF", - "BPM", - "WIG", - "MAP", - "FCS", - "RPROJ", - "PDF", - "CLS", - "TDF", - "SF", - "CHP", - "GCG", - "MGF", - "AVI", - "RDS", - "DS_Store", - "DAE", - "HTML", - "BAI", - "DB", - "BAM", - "ZIP", - "FASTA", - "GTF", - "maf", - "xls", - "mzIdentML", - "RAW", - "MATLAB script", - "pptx", - "H5", - "BIGWIG", - "IDAT", - "BED", - "bed12", - "mzXML", - "LIF", - "TXT", - "COOL", - "cel", - "PNG", - "TAR Format", - "HDF", - "MSF", - "cloupe", - "R File Format", - "MAT", - "MTX", - "SVS", - "HDF5", - "RTF", - "PZFX", - "FASTQ", - "FIG", - "GZIP Format", - "XML", - "TSV", - "SCN", - "TIFF", - "docx", - "CDS", - "FREQ", - "SRA", - "H5AD", - "SGI" - ] - }, - "NGS Sequencing Platform": { - "enum": [ - "Illumina HiSeq X Five", - "Illumina NextSeq 550", - "Ultima Genomics UG100", - "Helicos HeliScope", - "AB 5500 Genetic Analyzer", - "AB SOLiD 4 System", - "BGISEQ-500", - "AB 3130 Genetic Analyzer", - "Illumina MiSeq", - "Illumina NextSeq 2000", - "DNBSEQ-G50", - "454 GS FLX", - "AB SOLiD System 2.0", - "Ion Torrent S5 XL", - "DNBSEQ-G400", - "PacBio RS", - "454 GS FLX+", - "Illumina iSeq 100", - "Illumina NovaSeq 6000", - "PacBio RS II", - "Illumina NextSeq", - "AB 5500xl Genetic Analyzer", - "MGISEQ-2000RS", - "Illumina NextSeq 500", - "Ion Torrent PGM", - "Illumina HiSeq 4000", - "Illumina HiSeq 1000", - "AB SOLiD PI System", - "Illumina HiSeq 2500", - "Illumina Genome Analyzer II", - "Illumina MiniSeq", - "Illumina HiSeq 1500", - "Oxford Nanopore GridION", - "Oxford Nanopore MinION", - "Illumina HiScanSQ", - "Illumina NextSeq 1000", - "454 GS FLX Titanium", - "AB 3730xL Genetic Analyzer", - "PacBio Sequel", - "AB 3500 Genetic Analyzer", - "AB SOLiD System 3.0", - "AB SOLiD 4hq System", - "Ion Torrent Proton", - "AB 3730 Genetic Analyzer", - "Illumina Genome Analyzer IIx", - "PacBio Sequel II", - "Revio", - "AB 310 Genetic Analyzer", - "Oxford Nanopore PromethION", - "AB 5500x-Wl Genetic Analyzer", - "DNBSEQ-T7", - "Illumina HiSeq 2000", - "454 GS Junior", - "AB SOLiD 3 Plus System", - "Illumina HiSeq X Ten", - "Illumina NextSeq 2500", - "Complete Genomics", - "AB 3500xL Genetic Analyzer", - "454 GS", - "454 GS 20", - "Illumina Genome Analyzer", - "Ion Torrent S5", - "AB 3130xL Genetic Analyzer", - "Illumina HiSeq 3000", - "AB SOLiD System" - ] - }, - "Visium Spatial Read1": { - "enum": [ - "Spatial Barcode and UMI", - "cDNA" - ] - }, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS DV200": {}, - "Visium Slide Version": { - "enum": [ - "V2", - "V1", - "V3", - "V4" - ] - }, - "Biospecimen Key": {}, - "Visium Spatial Read2": { - "enum": [ - "Spatial Barcode and UMI", - "cDNA" - ] - }, - "Visium Image Re-orientation": { - "enum": [ - "True", - "False", - "" - ] - }, - "Protocol Link": {}, - "NGS End Bias": { - "enum": [ - "5 Prime", - "Full Length Transcript", - "3 Prime" - ] - }, - "NGS Library Preparation Days from Index": {}, - "File Alias": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Permeabilization Time": {}, - "NGS Read Indicator": { - "enum": [ - "R1", - "other", - "I1", - "R1&R2", - "R2" - ] - } - }, - "required": [ - "NGS Reverse Transcription Primer", - "10xVisiumRNALevel1_id", - "NGS Sequencing Library Construction Days from Index", - "Visium Run ID", - "Visium Spatial Library Construction Method", - "Visium Slide ID", - "Component", - "File Format", - "NGS Sequencing Platform", - "Visium Spatial Read1", - "Filename", - "Visium Slide Version", - "Visium Spatial Read2", - "NGS End Bias", - "File Alias", - "NGS Read Indicator" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.10xVisiumRNALevel2.schema.json b/json_schemas/mc2.10xVisiumRNALevel2.schema.json deleted file mode 100644 index e1ca73e1..00000000 --- a/json_schemas/mc2.10xVisiumRNALevel2.schema.json +++ /dev/null @@ -1,197 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Visium Run ID": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "File Format": { - "enum": [ - "GFF3", - "rcc", - "Python Script", - "RAW", - "SVS", - "GCG", - "H5", - "Pending Annotation", - "AVI", - "ZIP", - "ROUT", - "CLS", - "mzIdentML", - "HDF", - "HDF5", - "BIGWIG", - "DAE", - "IDAT", - "BAM", - "SRA", - "MGF", - "GCT", - "xls", - "TSV", - "FASTQ", - "MTX", - "FCS", - "FREQ", - "bedgraph", - "VCF", - "WIG", - "PZFX", - "CDS", - "cloupe", - "PDF", - "HTML", - "SCN", - "TXT", - "RPROJ", - "MAT", - "RDS", - "docx", - "BPM", - "TDF", - "STAT", - "unspecified", - "COOL", - "MAP", - "TAR Format", - "DS_Store", - "CSV", - "bed12", - "cel", - "SGI", - "R File Format", - "LIF", - "PNG", - "JSON", - "RTF", - "TIFF", - "FASTA", - "GCTx", - "mzXML", - "MATLAB script", - "JPG", - "CHP", - "GZIP Format", - "GTF", - "XML", - "SF", - "maf", - "pptx", - "DB", - "FIG", - "BED", - "MSF", - "PKL", - "xlsx", - "H5AD", - "BAI" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Applied Hard Trimming": { - "enum": [ - "False", - "True" - ] - }, - "Workflow Version": {}, - "Workflow Link": {}, - "10xVisiumRNALevel1 Key": {}, - "Visium Spatial Barcode Tag": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Genome Annotation URL": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Whitelist Spatial Barcode File Link": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Capture Area": { - "enum": [ - "D", - "B1", - "B", - "A1", - "C", - "A", - "C1", - "D1", - "" - ] - }, - "File Alias": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "10xVisiumRNALevel2_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Genomic Reference URL": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Checksum": {}, - "Genomic Reference": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium UMI Tag": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Biospecimen Key": {} - }, - "required": [ - "Visium Run ID", - "File Format", - "Component", - "Filename", - "Visium Applied Hard Trimming", - "Visium Spatial Barcode Tag", - "Genome Annotation URL", - "Visium Whitelist Spatial Barcode File Link", - "File Alias", - "10xVisiumRNALevel2_id", - "Genomic Reference URL", - "Genomic Reference", - "Visium UMI Tag" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.10xVisiumRNALevel3.schema.json b/json_schemas/mc2.10xVisiumRNALevel3.schema.json deleted file mode 100644 index 3cf5771e..00000000 --- a/json_schemas/mc2.10xVisiumRNALevel3.schema.json +++ /dev/null @@ -1,206 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Visium Median UMI Counts per Spot": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "File Alias": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "File Format": { - "enum": [ - "COOL", - "CSV", - "GTF", - "SVS", - "pptx", - "JPG", - "PKL", - "MTX", - "PNG", - "VCF", - "ROUT", - "BPM", - "GZIP Format", - "CDS", - "AVI", - "SGI", - "RAW", - "PZFX", - "DAE", - "Python Script", - "docx", - "mzXML", - "FCS", - "unspecified", - "JSON", - "rcc", - "WIG", - "SRA", - "MSF", - "GCT", - "xlsx", - "MAP", - "TSV", - "CLS", - "FREQ", - "SF", - "xls", - "GFF3", - "DS_Store", - "HTML", - "BAM", - "XML", - "TXT", - "BED", - "Pending Annotation", - "STAT", - "maf", - "H5", - "TDF", - "mzIdentML", - "bed12", - "TIFF", - "R File Format", - "BIGWIG", - "cloupe", - "MGF", - "PDF", - "bedgraph", - "RTF", - "HDF5", - "LIF", - "ZIP", - "cel", - "H5AD", - "TAR Format", - "IDAT", - "BAI", - "FIG", - "GCTx", - "SCN", - "HDF", - "DB", - "MATLAB script", - "RDS", - "RPROJ", - "FASTQ", - "CHP", - "GCG", - "MAT", - "FASTA" - ] - }, - "NGS Sequencing Coverage": {}, - "Visium File Type": { - "enum": [ - "unfiltered mex", - "high res image", - "barcodes", - "filtered mex", - "low res image", - "qc result html", - "fiducial image jpg", - "reference png", - "detected image png", - "json scale factors", - "detected jpg", - "reference jpg", - "tissue_positions", - "fiducial image png", - "probe dataset csv", - "features" - ] - }, - "Visium Median Number Genes per Spatial Spot": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Capture Area": { - "enum": [ - "B", - "D1", - "C", - "C1", - "B1", - "D", - "A", - "A1", - "" - ] - }, - "Visium Proportion Reads Mapped": {}, - "Visium Spots under tissue": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Visium Mean Reads per Spatial Spot": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Biospecimen Key": {}, - "Visium Run ID": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "10xVisiumRNALevel3_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Workflow Link": {}, - "10xVisiumAuxiliaryFiles Key": {}, - "Workflow Version": {}, - "10xVisiumRNALevel2 Key": {}, - "Visium Proportion Reads Mapped to Transcriptome": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Visium Median UMI Counts per Spot", - "File Alias", - "File Format", - "Visium File Type", - "Visium Median Number Genes per Spatial Spot", - "Component", - "Visium Spots under tissue", - "Visium Mean Reads per Spatial Spot", - "Visium Run ID", - "10xVisiumRNALevel3_id", - "Filename", - "Visium Proportion Reads Mapped to Transcriptome" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.10xVisiumRNALevel4.schema.json b/json_schemas/mc2.10xVisiumRNALevel4.schema.json deleted file mode 100644 index 2ccef455..00000000 --- a/json_schemas/mc2.10xVisiumRNALevel4.schema.json +++ /dev/null @@ -1,135 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "File Format": { - "enum": [ - "FCS", - "H5AD", - "DAE", - "MGF", - "MAP", - "Pending Annotation", - "SGI", - "MTX", - "mzIdentML", - "CLS", - "COOL", - "FREQ", - "cloupe", - "TIFF", - "GCT", - "GCTx", - "TSV", - "JPG", - "SF", - "GZIP Format", - "VCF", - "MATLAB script", - "mzXML", - "rcc", - "SVS", - "RTF", - "GCG", - "FASTQ", - "unspecified", - "XML", - "GFF3", - "ZIP", - "FIG", - "R File Format", - "SRA", - "MAT", - "CSV", - "DB", - "TXT", - "FASTA", - "PZFX", - "TDF", - "HDF", - "HDF5", - "xls", - "SCN", - "AVI", - "PDF", - "WIG", - "bed12", - "BAM", - "Python Script", - "PNG", - "HTML", - "cel", - "LIF", - "maf", - "BED", - "BPM", - "ROUT", - "BIGWIG", - "STAT", - "xlsx", - "PKL", - "TAR Format", - "DS_Store", - "IDAT", - "H5", - "docx", - "BAI", - "bedgraph", - "JSON", - "CHP", - "RPROJ", - "RAW", - "CDS", - "pptx", - "RDS", - "GTF", - "MSF" - ] - }, - "Workflow Link": {}, - "Visium Workflow Type": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Biospecimen Key": {}, - "10xVisiumRNALevel3 Key": {}, - "Run ID": {}, - "Visium Workflow Parameters Description": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "10xVisiumRNALevel4_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Workflow Version": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Component", - "File Format", - "Visium Workflow Type", - "Visium Workflow Parameters Description", - "10xVisiumRNALevel4_id", - "Filename" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.Biospecimen.schema.json b/json_schemas/mc2.Biospecimen.schema.json deleted file mode 100644 index cc4167dc..00000000 --- a/json_schemas/mc2.Biospecimen.schema.json +++ /dev/null @@ -1,9873 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Biospecimen Tumor Grade": { - "enum": [ - "GB", - "GX", - "G4", - "unknown", - "High Grade", - "Intermediate Grade", - "G1", - "Not Applicable", - "Not Reported", - "G3", - "G2", - "Low Grade", - "" - ] - }, - "Biospecimen Therapeutic Agent": { - "enum": [ - "Cathelicidin LL-37", - "Sulofenur", - "Tasquinimod", - "FAK Inhibitor GSK2256098", - "Menin-MLL Interaction Inhibitor SNDX-5613", - "Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein", - "Mitomycin B", - "Diethylnorspermine", - "Avitinib Maleate", - "Selonsertib", - "Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042", - "Antibody-drug Conjugate PF-06664178", - "Fazarabine", - "SERD D-0502", - "Sulindac", - "Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A", - "Actinomycin C2", - "Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008", - "Pegylated Recombinant Human Hyaluronidase PH20", - "CK1alpha/CDK7/CDK9 Inhibitor BTX-A51", - "Cositecan", - "Pilaralisib", - "Glucarpidase", - "Anti-PSMA Monoclonal Antibody-MMAE Conjugate", - "DKK1-Neutralizing Monoclonal Antibody DKN-01", - "Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962", - "Tacedinaline", - "PARP 1/2 Inhibitor IMP4297", - "Bruceanol D", - "Chloroquinoxaline Sulfonamide", - "Camsirubicin", - "MetAP2 Inhibitor APL-1202", - "LRP5 Antagonist BI 905681", - "Microtubule Inhibitor SCB01A", - "Oxaliplatin", - "Shark Cartilage", - "Grapiprant", - "Membrane-Disrupting Peptide EP-100", - "FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999", - "Iodine I 131 Apamistamab", - "Anti-VEGFR2 Monoclonal Antibody HLX06", - "VLP-encapsulated TLR9 Agonist CMP-001", - "Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372", - "BTK Inhibitor HZ-A-018", - "HCV DNA Vaccine INO-8000", - "Bromocriptine Mesylate", - "GITR Agonist MEDI1873", - "NY-ESO-1/GLA-SE Vaccine ID-G305", - "Pinometostat", - "Talaporfin Sodium", - "Degarelix", - "Acalisib", - "Angiogenesis/Heparanase Inhibitor PG545", - "Porcupine Inhibitor WNT974", - "Avadomide", - "Edicotinib", - "Sugemalimab", - "Apolizumab", - "ATM Kinase Inhibitor AZD1390", - "Thioredoxin-1 Inhibitor PX-12", - "Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497", - "Tivantinib", - "Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet", - "RET Inhibitor DS-5010", - "ERK Inhibitor MK-8353", - "Yttrium Y 90 Basiliximab", - "Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01", - "Canfosfamide Hydrochloride", - "Capecitabine", - "Folate-FITC", - "Talotrexin", - "Mitolactol", - "Cedefingol", - "Esorubicin Hydrochloride", - "Indoximod Prodrug NLG802", - "Iodine I-131", - "mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902", - "Umbralisib", - "Cytarabine Monophosphate Prodrug MB07133", - "Volasertib", - "Anti-mesothelin/MMAE Antibody-drug Conjugate RC88", - "PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1", - "FLT3 Inhibitor SKI-G-801", - "Vincristine Sulfate", - "Motexafin Gadolinium", - "Cevipabulin Succinate", - "Vandortuzumab Vedotin", - "Belzutifan", - "Akt Inhibitor SR13668", - "Atiprimod Dihydrochloride", - "Fenebrutinib", - "Liposome-encapsulated Daunorubicin-Cytarabine", - "MAGE-10.A2", - "Personalized Neoepitope Yeast Vaccine YE-NEO-001", - "Siplizumab", - "Trastuzumab-TLR 7/8 Agonist BDC-1001", - "Lutetium Lu 177-NeoB", - "Matrix Metalloproteinase Inhibitor MMI270", - "Atiprimod Dimaleate", - "Anti-CD38 Antibody-drug Conjugate STI-6129", - "Iloprost", - "Roflumilast", - "Octreotide Acetate", - "Cereblon Modulator CC-90009", - "Hyaluronidase-zzxf/Pertuzumab/Trastuzumab", - "Colorectal Tumor-Associated Peptides Vaccine IMA910", - "Ras Peptide ASP", - "Tubulin Polymerization Inhibitor VERU-111", - "Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101", - "Anti-TIM-3 Monoclonal Antibody TSR-022", - "Iridium Ir 192", - "P-cadherin Antagonist PF-03732010", - "Antibody-drug Conjugate ABBV-011", - "Gataparsen Sodium", - "Modakafusp Alfa", - "FGFR Inhibitor ASP5878", - "Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623", - "BP-Cx1-Platinum Complex BP-C1", - "LMP7 Inhibitor M3258", - "Anti-CTLA-4 Monoclonal Antibody ADG116", - "Lapachone", - "Quinacrine Hydrochloride", - "Anti-CTLA4 Monoclonal Antibody BMS-986218", - "Arugula Seed Powder", - "Ciforadenant", - "Gefitinib", - "Fotretamine", - "Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200", - "HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131", - "Staurosporine", - "Anti-hepcidin Monoclonal Antibody LY2787106", - "Caffeic Acid Phenethyl Ester", - "Dexamethasone Sodium Phosphate", - "Nifurtimox", - "Aerosol Gemcitabine", - "Lutetium Lu 177 Satoreotide Tetraxetan", - "Metatinib Tromethamine", - "MEK Inhibitor HL-085", - "Motesanib", - "Vadastuximab Talirine", - "Demcizumab", - "c-Met Inhibitor JNJ-38877605", - "Sustained-release Mitomycin C Hydrogel Formulation UGN-101", - "Vocimagene Amiretrorepvec", - "PRMT5 Inhibitor JNJ-64619178", - "Anti-MUC17/CD3 BiTE Antibody AMG 199", - "Piritrexim Isethionate", - "Inecalcitol", - "Rocakinogene Sifuplasmid", - "Interleukin-2 Liposome", - "Recombinant Human Papillomavirus Bivalent Vaccine", - "Tamrintamab Pamozirine", - "Paricalcitol", - "Retifanlimab", - "Interferon Alfa-2B", - "Trientine Hydrochloride", - "NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301", - "Inotuzumab Ozogamicin", - "Epcoritamab", - "Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702", - "Prexigebersen", - "Vosaroxin", - "Piroxantrone Hydrochloride", - "HDAC Inhibitor CKD-581", - "Semustine", - "Ketoconazole", - "CYP17 Inhibitor CFG920", - "Polymeric Camptothecin Prodrug XMT-1001", - "STING Agonist IMSA101", - "Enclomiphene", - "Temsirolimus", - "Hsp90 Inhibitor DS-2248", - "TLR Agonist BDB001", - "Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105", - "17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521", - "Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087", - "Selatinib Ditosilate", - "BET Inhibitor BAY1238097", - "C/EBP Beta Antagonist ST101", - "Tolebrutinib", - "Incyclinide", - "ERK1/2 Inhibitor ASN007", - "Allogeneic Cellular Vaccine 1650-G", - "Receptor Tyrosine Kinase Inhibitor R1530", - "Antibody-drug Conjugate MEDI7247", - "Smoothened Antagonist LDE225 Topical", - "Vindesine", - "LAIR-2 Fusion Protein NC410", - "Polymer-encapsulated Luteolin Nanoparticle", - "CD11b Agonist GB1275", - "C-myb Antisense Oligonucleotide G4460", - "Eflornithine Hydrochloride", - "IDH1 Mutant Inhibitor LY3410738", - "Protein Tyrosine Kinase 2 Inhibitor IN10018", - "p38 MAPK Inhibitor LY3007113", - "Atuveciclib", - "Lenalidomide Analog KPG-121", - "Recombinant Luteinizing Hormone", - "Liposomal Curcumin", - "Geldanamycin", - "Recombinant Thyroglobulin", - "Rigosertib Sodium", - "Pomegranate Liquid Extract", - "Yttrium Y 90-DOTA-di-HSG Peptide IMP-288", - "Carbendazim", - "LMB-1 Immunotoxin", - "Anti-HER2 Antibody-drug Conjugate A166", - "Autologous Multi-lineage Potential Cells", - "Melphalan", - "Zolbetuximab", - "Racotumomab", - "ALK Inhibitor PLB 1003", - "Motexafin Lutetium", - "Simmitinib", - "Multifunctional/Multitargeted Anticancer Agent OMN54", - "Anti-CD19/CD3 BiTE Antibody AMG 562", - "MKC-1", - "Bispecific Antibody AMG 509", - "Arginine Butyrate", - "FGFR Inhibitor AZD4547", - "O6-Benzylguanine", - "Pibrozelesin Hydrobromide", - "Carboplatin", - "Ceritinib", - "Vorolanib", - "Iodine I 131 TM-601", - "Immunocytokine NHS-IL2-LT", - "Digitoxin", - "HER2 Inhibitor TAS0728", - "Ontorpacept", - "Iodine I 131 Rituximab", - "Pipendoxifene", - "Talampanel", - "Rosuvastatin", - "Trimetrexate", - "Heterodimeric Interleukin-15", - "Sapitinib", - "TLR Agonist BSG-001", - "Xevinapant", - "Gilteritinib", - "Afatinib", - "RFT5-dgA Immunotoxin IMTOX25", - "KSP Inhibitor AZD4877", - "Otlertuzumab", - "Ruthenium Ru-106", - "SLCT Inhibitor GNS561", - "Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404", - "Indatuximab Ravtansine", - "CD123-specific Targeting Module TM123", - "Tyrosine Kinase Inhibitor", - "Phosphorodiamidate Morpholino Oligomer AVI-4126", - "Codrituzumab", - "Verubulin Hydrochloride", - "Lontucirev", - "Recombinant Interferon Gamma", - "Beta-elemene", - "CAIX Inhibitor SLC-0111", - "SR-BP1/HSI Inhibitor SR31747A", - "Axatilimab", - "STING Agonist MK-1454", - "Pirfenidone", - "BF-200 Gel Formulation", - "Multi-epitope HER2 Peptide Vaccine H2NVAC", - "HDAC Inhibitor CHR-2845", - "Abexinostat", - "Nanatinostat", - "Monoclonal Antibody MX35 F(ab')2", - "Monoclonal Antibody RAV12", - "Retaspimycin", - "Sodium Selenite", - "Taxane Analogue TPI 287", - "Anti-PD-1 Monoclonal Antibody Sym021", - "Clomiphene Citrate", - "Methylprednisolone Sodium Succinate", - "Tanespimycin", - "Tanomastat", - "Therapeutic Angiotensin-(1-7)", - "Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241", - "BET Inhibitor FT-1101", - "DHA-Paclitaxel", - "EGFR/HER2 Kinase Inhibitor TAK-285", - "Pterostilbene", - "Motesanib Diphosphate", - "Radgocitabine", - "pan-RAF Inhibitor LXH254", - "Fosquidone", - "CDK4/6 Inhibitor TQB3616", - "Sibrotuzumab", - "JAK2/Src Inhibitor NS-018", - "Topical Gemcitabine Hydrochloride", - "Vorsetzumab Mafodotin", - "Licorice", - "Acetylcysteine", - "Antimetabolite FF-10502", - "Canertinib Dihydrochloride", - "Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062", - "HER2 Inhibitor DZD1516", - "Multi-neo-epitope Vaccine OSE 2101", - "Anti-IL-8 Monoclonal Antibody BMS-986253", - "Agerafenib", - "Bactobolin", - "Ulixertinib", - "Anti-B7-H4 Monoclonal Antibody FPA150", - "Tilsotolimod Sodium", - "Bruceanol E", - "Anti-MUC16/CD3 Bispecific Antibody REGN4018", - "Lysine-specific Demethylase 1 Inhibitor INCB059872", - "Kanitinib", - "Liposomal Topotecan FF-10850", - "Salmonella VNP20009", - "FMS Inhibitor JNJ-40346527", - "Allogeneic Anti-BCMA-CAR T-cells PBCAR269A", - "Choline Kinase Alpha Inhibitor TCD-717", - "Oxeclosporin", - "Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110", - "iNOS Dimerization Inhibitor ASP9853", - "Monoclonal Antibody L6", - "Dichloroallyl Lawsone", - "Infigratinib Mesylate", - "BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351", - "Y 90 Monoclonal Antibody HMFG1", - "Anti-c-Met Antibody-drug Conjugate HTI-1066", - "Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100", - "Docetaxel-loaded Nanopharmaceutical CRLX301", - "CT2584 HMS", - "Picibanil", - "Lucanthone", - "IMT-1012 Immunotherapeutic Vaccine", - "Revdofilimab", - "Autologous Anti-CD123 CAR-T Cells", - "4'-Iodo-4'-Deoxydoxorubicin", - "STAT Inhibitor OPB-111077", - "CYP17/CYP11B2 Inhibitor LAE001", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217", - "Recombinant Human Papillomavirus 11-valent Vaccine", - "BET Inhibitor GS-5829", - "Inosine Monophosphate Dehydrogenase Inhibitor AVN944", - "Dimethylmyleran", - "Strontium Chloride Sr-89", - "Litronesib", - "2-Hydroxyflutamide Depot", - "Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22", - "BET Inhibitor RO6870810", - "Misonidazole", - "Yttrium Y-90 Ibritumomab Tiuxetan", - "Elmustine", - "Liposomal c-raf Antisense Oligonucleotide", - "Long Peptide Vaccine 7", - "Miptenalimab", - "ssRNA-based Immunomodulator CV8102", - "Antisense Oligonucleotide GTI-2040", - "MK0731", - "p53-HDM2 Protein-protein Interaction Inhibitor APG-115", - "Yttrium Y-90 Clivatuzumab Tetraxetan", - "Androgen Receptor Antisense Oligonucleotide EZN-4176", - "Trastuzumab Emtansine", - "Nelipepimut-S", - "Motolimod", - "Palifosfamide Tromethamine", - "Recombinant Interferon Alpha 2b-like Protein", - "Vorasidenib", - "Anti-AG7 Antibody Drug Conjugate AbGn-107", - "Mifepristone", - "Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate", - "Anti-HBEGF Monoclonal Antibody U3-1565", - "Dendritic Cell-targeting Lentiviral Vector ID-LV305", - "Neoantigen Vaccine GEN-009", - "MDR Modulator CBT-1", - "TLR-Directed Cationic Lipid-DNA Complex JVRS-100", - "CYL-02 Plasmid DNA", - "Cesalin", - "Acronine", - "Phosphoramide Mustard", - "Cetrelimab", - "Lisocabtagene Maraleucel", - "Monoclonal Antibody NEO-201", - "Eflornithine", - "Anti-CD26 Monoclonal Antibody YS110", - "BiTE Antibody AMG 910", - "Imexon", - "Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014", - "Nedaplatin", - "PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170", - "Anti-TIGIT Monoclonal Antibody AB154", - "Bisantrene", - "Ribonuclease QBI-139", - "Ubidecarenone Nanodispersion BPM31510n", - "Topoisomerase I Inhibitor LMP776", - "Darolutamide", - "Canerpaturev", - "Iobenguane I-131", - "Bosutinib Monohydrate", - "Ponatinib Hydrochloride", - "Tegavivint", - "Gemcitabine Prodrug LY2334737", - "Radix Angelicae Sinensis/Radix Astragali Herbal Supplement", - "Alpha V Beta 8 Antagonist PF-06940434", - "N-Methylformamide", - "ALK Inhibitor TAE684", - "Favezelimab", - "Osimertinib", - "Leflunomide", - "Recombinant Erwinia asparaginase JZP-458", - "Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428", - "Protease-activated Anti-PD-L1 Antibody Prodrug CX-072", - "Therapeutic Hydrocortisone", - "Anti-PD1 Monoclonal Antibody AGEN2034", - "Diindolylmethane", - "Prostaglandin E2 EP4 Receptor Inhibitor AN0025", - "Imalumab", - "BC-819 Plasmid/Polyethylenimine Complex", - "KRAS G12C Inhibitor LY3499446", - "HIF-2alpha Inhibitor PT2977", - "Onatasertib", - "Bozitinib", - "Tezacitabine", - "Black Raspberry Nectar", - "Anti-CD33/CD3 Bispecific Antibody GEM 333", - "Anti-TROP2 Antibody-drug Conjugate SKB264", - "Talazoparib", - "Hypoxia-activated Prodrug TH-4000", - "Anti-HLA-G Antibody TTX-080", - "Pegylated Interferon Alfa", - "PAK4/NAMPT Inhibitor KPT-9274", - "Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2", - "Anti-CD47 Monoclonal Antibody IBI188", - "Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19", - "Pasireotide", - "Pladienolide Derivative E7107", - "Mipsagargin", - "Monoclonal Antibody R24", - "Vibostolimab", - "Raloxifene", - "Echinomycin", - "Amifostine", - "EGFR Inhibitor DBPR112", - "Tiomolibdate Choline", - "Tritylcysteine", - "Mycobacterium tuberculosis Arabinomannan Z-100", - "Anti-CD47 Monoclonal Antibody AO-176", - "Anti-CEA BiTE Monoclonal Antibody AMG211", - "Bcl-Xs Adenovirus Vaccine", - "Dynemicin", - "HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202", - "Phenytoin Sodium", - "Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014", - "Cedazuridine", - "Cryptophycin", - "MVA-FCU1 TG4023", - "AEE788", - "Aerosolized Liposomal Rubitecan", - "Doxorubicin-Eluting Beads", - "Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso", - "Hypericin", - "Tretinoin", - "Pamidronate Disodium", - "Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907", - "Androgen Receptor Antagonist SHR3680", - "Docetaxel/Ritonavir", - "FGFR Inhibitor CPL304110", - "PI3K/BET Inhibitor LY294002", - "Lead Pb 212 TCMC-trastuzumab", - "Allogeneic Irradiated Melanoma Cell Vaccine CSF470", - "Akt/ERK Inhibitor ONC201", - "BRAFV600/PI3K Inhibitor ASN003", - "PARP Inhibitor E7016", - "Anti-PD-1 Monoclonal Antibody HX008", - "Panobinostat Nanoparticle Formulation MTX110", - "CHK1 Inhibitor PF-477736", - "Panulisib", - "Olivomycin", - "Simurosertib", - "Isotretinoin", - "ERK1/2 Inhibitor KO-947", - "Afimoxifene", - "Tetraphenyl Chlorin Disulfonate", - "MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP", - "Crystalline Genistein Formulation AXP107-11", - "PD-1 Directed Probody CX-188", - "Epacadostat", - "5-Fluoro-2-Deoxycytidine", - "Lifastuzumab Vedotin", - "Ertumaxomab", - "FAK Inhibitor PF-00562271", - "Extended Release Metformin Hydrochloride", - "TIGIT Inhibitor M6223", - "MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201", - "Iroplact", - "I 131 Antiferritin Immunoglobulin", - "Aldesleukin", - "Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621", - "Indole-3-Carbinol", - "Natalizumab", - "Rice Bran", - "Ganetespib", - "Temozolomide", - "Azintuxizumab Vedotin", - "Denosumab", - "Epothilone Analog UTD1", - "Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47", - "Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931", - "Cemadotin Hydrochloride", - "Recombinant Tyrosinase-Related Protein-2", - "AXL Inhibitor SLC-391", - "Cemiplimab", - "Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711", - "Tafasitamab", - "Lutetium Lu 177 Dotatate", - "Zorifertinib", - "Felzartamab", - "Ansamitomicin P-3", - "Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201", - "Integrin Receptor Antagonist GLPG0187", - "Degarelix Acetate", - "Placebo", - "Alitretinoin", - "Anti-Ly6E Antibody-Drug Conjugate RG 7841", - "Milatuzumab", - "Lutetium Lu-177 Rituximab", - "Medroxyprogesterone", - "Amuvatinib", - "Iodine I 131 Omburtamab", - "GI-4000 Vaccine", - "Parsatuzumab", - "PD-1 Inhibitor", - "Saracatinib Difumarate", - "Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752", - "Anti-ICOS Monoclonal Antibody KY1044", - "Uproleselan", - "Camidanlumab Tesirine", - "Cantuzumab Ravtansine", - "Carboxyamidotriazole Orotate", - "CDK4/6 Inhibitor", - "Phenesterin", - "Monoclonal Antibody D6.12", - "Gemcitabine Hydrochloride Emulsion", - "Iodine I 125-Anti-EGFR-425 Monoclonal Antibody", - "Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424", - "Levothyroxine Sodium", - "Ranpirnase", - "Temoporfin", - "Bimiralisib", - "Anti-GCC Antibody-Drug Conjugate MLN0264", - "BRAF(V600E) Kinase Inhibitor ABM-1310", - "Black Cohosh", - "Anti-prolactin Receptor Antibody LFA102", - "Belotecan Hydrochloride", - "Carbetimer", - "Anti-LAG-3 Monoclonal Antibody LAG525", - "p53/HDM2 Interaction Inhibitor CGM097", - "Anti-A33 Monoclonal Antibody KRN330", - "Dexrazoxane", - "Relatlimab", - "Zoptarelin Doxorubicin", - "Ulinastatin", - "Polo-like Kinase 1 Inhibitor NMS-1286937", - "Cord Blood-derived Expanded Natural Killer Cells PNK-007", - "Topical Potassium Dobesilate", - "Wnt-5a Mimic Hexapeptide Foxy-5", - "Siremadlin", - "Tremelimumab", - "CD73 Inhibitor LY3475070", - "LMB-9 Immunotoxin", - "Anti-CD33/CD3 BiTE Antibody AMG 673", - "Deuteporfin", - "MET Tyrosine Kinase Inhibitor PF-04217903", - "PGG Beta-Glucan", - "Elesclomol", - "Vorinostat", - "Phaleria macrocarpa Extract DLBS-1425", - "Trastuzumab Deruxtecan", - "Beta-Glucan MM-10-001", - "Dactinomycin", - "Losoxantrone Hydrochloride", - "Anti-CTGF Monoclonal Antibody FG-3019", - "Synthetic Plumbagin PCUR-101", - "Sulfatinib", - "Encapsulated Rapamycin", - "Ipafricept", - "Anti-CD19 iCAR NK Cells", - "Anti-CEACAM5 Antibody-Drug Conjugate SAR408701", - "Futuximab/Modotuximab Mixture", - "Mucoadhesive Paclitaxel Formulation", - "DNA-PK/PI3K-delta Inhibitor BR101801", - "MOF Compound RiMO-301", - "TIGIT-targeting Agent MK-7684", - "Ofranergene Obadenovec", - "Anti-PD-1/CD47 Infusion Protein HX009", - "STING Agonist GSK3745417", - "Pan-PIM Inhibitor INCB053914", - "Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19", - "Naratuximab Emtansine", - "Recombinant Interferon Alfa-2a", - "SHP-1 Agonist SC-43", - "JAK Inhibitor", - "Bruceanol H", - "Dynemicin A", - "OxPhos Inhibitor VLX600", - "TORC1/2 Kinase Inhibitor DS-3078a", - "Anti-TGF-beta Monoclonal Antibody SAR-439459", - "PI3K-delta Inhibitor PWT143", - "Ripertamab", - "SERD GDC-9545", - "Vactosertib", - "Belagenpumatucel-L", - "EGFR Mutant-specific Inhibitor BPI-7711", - "Ralaniten Acetate", - "Amuvatinib Hydrochloride", - "Chlorodihydropyrimidine", - "Axicabtagene Ciloleucel", - "Fluorouracil-E Therapeutic Implant", - "Antiangiogenic Drug Combination TL-118", - "Platinum Compound", - "Anti-EGFR Monoclonal Antibody EMD 55900", - "Nutlin-3a", - "Rilotumumab", - "Tazarotene", - "Vinzolidine", - "Bromacrylide", - "Anti-C4.4a Antibody-Drug Conjugate BAY1129980", - "ERK Inhibitor CC-90003", - "MEK Inhibitor SHR 7390", - "P-p68 Inhibitor RX-5902", - "Protein Stabilized Liposomal Docetaxel Nanoparticles", - "Chlorambucil", - "Shared Anti-Idiotype-AB-S006", - "Sparfosic Acid", - "Anti-CD19 Monoclonal Antibody DI-B4", - "Hsp90-targeted Photosensitizer HS-201", - "Midostaurin", - "Lutetium Lu 177-Edotreotide", - "Miransertib", - "Bortezomib", - "Seclidemstat", - "Tecogalan Sodium", - "Tosedostat", - "Autologous TCRm-expressing T-cells ET140203", - "Androgen Antagonist APC-100", - "Survivin mRNA Antagonist EZN-3042", - "Apomine", - "Tivozanib", - "H1299 Tumor Cell Lysate Vaccine", - "pbi-shRNA STMN1 Lipoplex", - "ALK/ROS1/Met Inhibitor TQ-B3101", - "S1P Receptor Agonist KRP203", - "PI3K-delta Inhibitor HMPL 689", - "Triaziquone", - "Plevitrexed", - "Liposomal MUC1/PET-lipid A Vaccine ONT-10", - "LSD1 Inhibitor SYHA1807", - "Cytochlor", - "Carmustine Implant", - "IDO1/TDO2 Inhibitor M4112", - "Hematoporphyrin Derivative", - "Iso-fludelone", - "Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514", - "Sumoylation Inhibitor TAK-981", - "TRPV6 Calcium Channel Inhibitor SOR-C13", - "Recombinant Interferon", - "Recombinant Granulocyte-Macrophage Colony-Stimulating Factor", - "Antibody-drug Conjugate ABBV-155", - "Anti-LAG-3 Monoclonal Antibody REGN3767", - "AKT Inhibitor ARQ 092", - "Carubicin Hydrochloride", - "Pentostatin", - "BRAF(V600E) Kinase Inhibitor RO5212054", - "Taletrectinib", - "Elacytarabine", - "Cold Contaminant-free Iobenguane I-131", - "Cyclosporine", - "Edatrexate", - "Lutetium Lu 177 DOTA-biotin", - "Rovalpituzumab Tesirine", - "Safingol", - "Xanthohumol", - "Anti-CLEVER-1 Monoclonal Antibody FP-1305", - "Methoxyamine", - "JAK1 Inhibitor INCB052793", - "Anti-DLL3/CD3 BiTE Antibody AMG 757", - "Anti-ICAM-1 Monoclonal Antibody BI-505", - "Golvatinib", - "JAK2 Inhibitor XL019", - "Anti-FLT3/CD3 BiTE Antibody AMG 427", - "Ecromeximab", - "Anti-CD137 Agonistic Monoclonal Antibody LVGN6051", - "Mobocertinib", - "Cimetidine", - "Benzaldehyde Dimethane Sulfonate", - "Topoisomerase I/II Inhibitor NEV-801", - "Recombinant KSA Glycoprotein CO17-1A", - "Antineoplaston A10", - "Anti-LAG-3 Monoclonal Antibody INCAGN02385", - "DACH-Platin Micelle NC-4016", - "Puromycin Hydrochloride", - "Bazedoxifene", - "Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01", - "Glumetinib", - "Pegylated Liposomal Mitomycin C Lipid-based Prodrug", - "Ketotrexate", - "White Carrot", - "Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A", - "Pingyangmycin", - "Trabectedin", - "Efizonerimod", - "CCR4 Inhibitor FLX475", - "FGFR4 Inhibitor ICP-105", - "Phenyl Acetate", - "Oral Myoma Vaccine V3-myoma", - "HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001", - "Rolinsatamab Talirine", - "Green Tea Extract-based Antioxidant Supplement", - "Simotaxel", - "Anti-PD-L1 Monoclonal Antibody GR1405", - "Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703", - "Relacorilant", - "Lorlatinib", - "Belimumab", - "Anti-ANG2 Monoclonal Antibody MEDI-3617", - "Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207", - "Brentuximab", - "Yttrium Y 90 Monoclonal Antibody B3", - "Fedratinib", - "Lyophilized Black Raspberry Lozenge", - "Givinostat", - "Momelotinib", - "Selicrelumab", - "Carubicin", - "Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A", - "Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter", - "Talabostat Mesylate", - "BMI1 Inhibitor PTC596", - "FACT Complex-targeting Curaxin CBL0137", - "Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A", - "cis-Urocanic Acid", - "Fluorine F 18 Ara-G", - "HDAC Inhibitor AR-42", - "mTOR1/2 Kinase Inhibitor ME-344", - "Oncolytic HSV-1 rQNestin34.5v.2", - "PI3K Inhibitor GSK1059615", - "Pumitepa", - "Anti-HER-2 Bispecific Antibody KN026", - "Sargramostim", - "Androgen Receptor Inhibitor EPI-7386", - "Onvatilimab", - "Tetanus Toxoid Vaccine", - "Tucotuzumab Celmoleukin", - "Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256", - "CD4-specific Telomerase Peptide Vaccine UCPVax", - "Etigilimab", - "Mannosylerythritol Lipid", - "Rodorubicin", - "Taurultam Analogue GP-2250", - "Thioguanine Anhydrous", - "ALK Inhibitor RO5424802", - "Protein Kinase C Inhibitor IDE196", - "Oltipraz", - "Colchicine-Site Binding Agent ABT-751", - "Tabelecleucel", - "EP2/EP4 Antagonist TPST-1495", - "Iberdomide", - "Troriluzole", - "Hexylresorcinol", - "Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006", - "Androgen Receptor Downregulator AZD3514", - "Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody", - "Volociximab", - "Anti-CD123/CD3 BiTE Antibody SAR440234", - "Bovine Cartilage", - "Monoclonal Antibody 4B5 Anti-Idiotype Vaccine", - "Morpholinodoxorubicin", - "Methazolamide", - "Pexidartinib", - "Anti-PD-L1 Monoclonal Antibody TG-1501", - "HDAC Class I/IIb Inhibitor HG146", - "Methyl-5-Aminolevulinate Hydrochloride Cream", - "Nab-paclitaxel", - "Cobomarsen", - "Anti-RANKL Monoclonal Antibody GB-223", - "Monoclonal Antibody TRK-950", - "MKNK1 Inhibitor BAY 1143269", - "Nogalamycin", - "pan-HER Kinase Inhibitor AC480", - "Rigosertib", - "Autologous Anti-FLT3 CAR T Cells AMG 553", - "Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A", - "Fosaprepitant", - "Perflenapent Emulsion", - "Topixantrone", - "Diazepinomicin", - "Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315", - "Trametinib Dimethyl Sulfoxide", - "Anti-BCMA Antibody SEA-BCMA", - "Opucolimab", - "Nanoparticle-based Paclitaxel Suspension", - "Personalized Neoantigen DNA Vaccine GNOS-PV01", - "Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841", - "Lentinan", - "Tefinostat", - "Anti-CD20/CD3 Monoclonal Antibody REGN1979", - "Redaporfin", - "DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555", - "Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19", - "Durvalumab", - "NLRP3 Agonist BMS-986299", - "Autologous CD19/PD-1 Bispecific CAR-T Cells", - "Triptorelin Pamoate", - "MAT2A Inhibitor AG-270", - "Aderbasib", - "BET Inhibitor INCB054329", - "Salirasib", - "Burixafor Hydrobromide", - "Repotrectinib", - "Bendamustine-containing Nanoparticle-based Formulation RXDX-107", - "Serine/Threonine Kinase Inhibitor CBP501", - "Tirbanibulin", - "Taxane Compound", - "Milademetan Tosylate", - "Carzelesin", - "Tubulin Inhibitor ALB 109564 Dihydrochloride", - "Anti-CD47 Monoclonal Antibody SHR-1603", - "Anti-CD123 Monoclonal Antibody CSL360", - "Glecaprevir/Pibrentasvir", - "Pan-RAR Agonist/AP-1 Inhibitor LGD 1550", - "Immediate-release Onapristone", - "Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes", - "Mutant IDH1 Inhibitor DS-1001", - "Cevipabulin Fumarate", - "Yttrium Y 90 Daclizumab", - "Abagovomab", - "Anti-c-Met Monoclonal Antibody HLX55", - "HER2-targeted DARPin MP0274", - "Tisotumab Vedotin", - "Anti-CD20 Monoclonal Antibody SCT400", - "Anti-OFA Immunotherapeutic BB-MPI-03", - "Etanidazole", - "RAD51 Inhibitor CYT-0851", - "Submicron Particle Paclitaxel Sterile Suspension", - "Vapreotide", - "VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813", - "Vitamin D3 Analogue ILX23-7553", - "CBP/beta-catenin Antagonist PRI-724", - "9H-Purine-6Thio-98D", - "Encorafenib", - "Galectin Inhibitor GR-MD-02", - "Megestrol Acetate", - "Anti-ROR1 ADC VLS-101", - "Dihydroorotate Dehydrogenase Inhibitor BAY2402234", - "Emepepimut-S", - "Pixatimod", - "Iodine I 131 Monoclonal Antibody CC49-deltaCH2", - "Herbimycin", - "Allogeneic Anti-CD20-CAR T-cells PBCAR20A", - "Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A", - "Anti-CD137 Agonistic Monoclonal Antibody ADG106", - "Anti-CD40 Agonist Monoclonal Antibody ABBV-927", - "Anti-DR5 Agonistic Monoclonal Antibody INBRX-109", - "Palbociclib Isethionate", - "Anti-PD-1 Monoclonal Antibody BAT1306", - "ERK 1/2 Inhibitor ASTX029", - "MCL-1 inhibitor AMG 397", - "Palladium Pd-103", - "ERK Inhibitor GDC-0994", - "Mitoxantrone Hydrochloride", - "Carbon C 14-pamiparib", - "Abarelix", - "Bardoxolone Methyl", - "Fianlimab", - "hTERT-encoding DNA Vaccine INVAC-1", - "Linifanib", - "SMO Protein Inhibitor ZSP1602", - "BET inhibitor BI 894999", - "Alvocidib", - "Wnt Signaling Pathway Inhibitor SM08502", - "Ianalumab", - "Micellar Nanoparticle-encapsulated Epirubicin", - "Galunisertib", - "Anti-CD73 Monoclonal Antibody TJ4309", - "Etoglucid", - "Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207", - "Anti-PD-1 Monoclonal Antibody BCD-100", - "Milk Thistle", - "Oral Cancer Vaccine V3-OVA", - "IAP Inhibitor APG-1387", - "Monocarboxylate Transporter 1 Inhibitor AZD3965", - "Emitefur", - "3'-dA Phosphoramidate NUC-7738", - "Anetumab Ravtansine", - "Iodine I 131 Monoclonal Antibody BC8", - "Mitindomide", - "Folic Acid", - "Ningetinib Tosylate", - "Shared Anti-Idiotype-AB-S024A", - "Canfosfamide", - "Pictilisib", - "Autologous Anti-BCMA CAR-transduced T-cells KITE-585", - "Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001", - "Elbasvir/Grazoprevir", - "Ontuxizumab", - "Anti-MUC1 Monoclonal Antibody BTH1704", - "CXCR4 Peptide Antagonist LY2510924", - "Porfiromycin", - "Piritrexim", - "Brentuximab Vedotin", - "Anti-FLT3 Antibody-drug Conjugate AGS62P1", - "Sitimagene Ceradenovec", - "Pegvorhyaluronidase Alfa", - "Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12", - "Anti-IL-13 Humanized Monoclonal Antibody TNX-650", - "Lurtotecan", - "Olaptesed Pegol", - "Anti-CA19-9 Monoclonal Antibody 5B1", - "Aziridinylbenzoquinone RH1", - "Gatipotuzumab", - "Allogeneic Natural Killer Cell Line MG4101", - "Feladilimab", - "Mitobronitol", - "Iodine I 131 Monoclonal Antibody G-250", - "Anti-CD70 Monoclonal Antibody MDX-1411", - "Esperamicin A1", - "Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1", - "Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101", - "Monoclonal Antibody HuAFP31", - "Opaganib", - "Fenretinide Lipid Matrix", - "Anti-FLT3 Monoclonal Antibody 4G8-SDIEM", - "FGFR/CSF-1R Inhibitor 3D185", - "Cytarabine", - "Immunotherapeutic Combination Product CMB305", - "Tomivosertib", - "Autologous Tumor Infiltrating Lymphocytes MDA-TIL", - "Emofolin Sodium", - "Siltuximab", - "Polidocanol", - "Dezaguanine", - "Serclutamab Talirine", - "Aurora Kinase Inhibitor PF-03814735", - "CDK1/2/4 Inhibitor AG-024322", - "JNK Inhibitor CC-401", - "Pan-AKT Inhibitor ARQ751", - "Exisulind", - "Smoothened Antagonist TAK-441", - "Anti-C5aR Monoclonal Antibody IPH5401", - "Lavendustin A", - "Triamcinolone Hexacetonide", - "Bispecific Antibody AGEN1223", - "Abexinostat Tosylate", - "Duvortuxizumab", - "Limonene; (+/-)-", - "Carboxyphenyl Retinamide", - "Oncolytic Herpes Simplex Virus-1 ONCR-177", - "Avapritinib", - "Lutetium Lu 177 Monoclonal Antibody J591", - "PIM Kinase Inhibitor SGI-1776", - "CXCR2 Antagonist QBM076", - "MARCKS Protein Inhibitor BIO-11006", - "Brigatinib", - "RAF Kinase Inhibitor L-779450", - "Simalikalactone D", - "Olaparib", - "Anti-PD-1/VEGF Bispecific Antibody AK112", - "Autologous Anti-CD19 TAC-T cells TAC01-CD19", - "Poly-alendronate Dextran-Guanidine Conjugate", - "Anti-BCMA Antibody-drug Conjugate AMG 224", - "3'-C-ethynylcytidine", - "Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306", - "Prohibitin-Targeting Peptide 1", - "Recombinant Transforming Growth Factor-Beta", - "Rhizoxin", - "c-Met Inhibitor GST-HG161", - "Baricitinib", - "Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777", - "IDH1R132H-Specific Peptide Vaccine PEPIDH1M", - "Perifosine", - "Asciminib", - "Pegylated Recombinant Interleukin-2 THOR-707", - "Resveratrol", - "Sunitinib Malate", - "Cordycepin Triphosphate", - "Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01", - "Oral Ixabepilone", - "Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1", - "Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217", - "Synthetic Alkaloid PM00104", - "Breflate", - "Chloroquine", - "Recombinant Erythropoietin", - "Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8", - "Tankyrase Inhibitor STP1002", - "Esterified Estrogens", - "Pyroxamide", - "CK2-targeting Synthetic Peptide CIGB-300", - "Ioflubenzamide I-131", - "Folate Receptor-Targeted Vinca Alkaloid EC0489", - "Compound Kushen Injection", - "Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2", - "Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901", - "Vinblastine", - "Licartin", - "Niclosamide", - "Telapristone", - "Rogletimide", - "Sotrastaurin Acetate", - "Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate", - "Ripretinib", - "ALK-2 Inhibitor TP-0184", - "Indusatumab Vedotin", - "Recombinant Interferon Alfa-2b", - "IDH1(R132) Inhibitor IDH305", - "Brilanestrant", - "Lerociclib", - "Pimurutamab", - "Yttrium Y-90 Epratuzumab Tetraxetan", - "Fc-engineered Anti-CD40 Agonist Antibody 2141-V11", - "Mannosulfan", - "NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611", - "Conbercept", - "CpG Oligodeoxynucleotide GNKG168", - "Ursolic Acid", - "HDAC8 Inhibitor NBM-BMX", - "Doxorubicin-Magnetic Targeted Carrier Complex", - "Oglufanide Disodium", - "Ropocamptide", - "4-Thio-2-deoxycytidine", - "Tiragolumab", - "Multikinase Inhibitor AEE788", - "Anti-HER2 Antibody-drug Conjugate BAT8001", - "Anti-CD20 Monoclonal Antibody PRO131921", - "Anti-CD46 Antibody-drug Conjugate FOR46", - "Wnt Signaling Inhibitor SM04755", - "Leuprolide Mesylate Injectable Suspension", - "Enavatuzumab", - "Nab-paclitaxel/Rituximab-coated Nanoparticle AR160", - "Alestramustine", - "Anti-HER3 Monoclonal Antibody GSK2849330", - "Aurora A Kinase Inhibitor LY3295668", - "Polyandrol", - "Anti-CD33 Antibody-drug Conjugate IMGN779", - "DNA-dependent Protein Kinase Inhibitor VX-984", - "p97 Inhibitor CB-5339", - "Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015", - "Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88", - "Vinflunine Ditartrate", - "Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11", - "Tebentafusp", - "Autologous TCR-engineered T-cells IMA202", - "iNKT Cell Agonist ABX196", - "Camptothecin Glycoconjugate BAY 38-3441", - "Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240", - "MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells", - "Flumatinib", - "Sotigalimab", - "Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A", - "Anti-c-fms Monoclonal Antibody AMG 820", - "Anti-PD-1 Monoclonal Antibody MGA012", - "Coriolus Versicolor Extract", - "Gemcitabine", - "Anti-C-met Monoclonal Antibody SAIT301", - "Remetinostat", - "SERD SHR9549", - "Anti-TIM-3 Monoclonal Antibody MBG453", - "Barasertib", - "Arabinoxylan Compound MGN3", - "CYP11A1 inhibitor ODM-208", - "Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360", - "Immunomodulatory Oligonucleotide HYB2055", - "Aphidicoline Glycinate", - "CENP-E Inhibitor GSK-923295", - "Anti-Globo H Monoclonal Antibody OBI-888", - "BET Inhibitor INCB057643", - "Corticorelin Acetate", - "PI3K p110beta/delta Inhibitor KA2237", - "Sodium Dichloroacetate", - "HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c", - "Trimelamol", - "Liposomal Docetaxel", - "TGFbeta Inhibitor LY3200882", - "huBC1-huIL12 Fusion Protein AS1409", - "Anti-VEGFR3 Monoclonal Antibody IMC-3C5", - "Galocitabine", - "Dasatinib", - "Antisense Oligonucleotide QR-313", - "Prolgolimab", - "Streptonigrin", - "CXCR1/2 Inhibitor SX-682", - "Gandotinib", - "Anti-HER2 Bispecific Antibody-drug Conjugate ZW49", - "Chk1 Inhibitor GDC-0575", - "Mocetinostat", - "Camptothecin-20(S)-O-Propionate Hydrate", - "Aminopterin", - "Menogaril", - "FGFR4 Inhibitor BLU 9931", - "Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes", - "hTERT Vaccine V934/V935", - "Anti-CD27L Antibody-Drug Conjugate AMG 172", - "Dacomitinib", - "DR5-targeting Tetrameric Nanobody Agonist TAS266", - "Innate Immunostimulator rBBX-01", - "Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001", - "Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody", - "Oral Aminolevulinic Acid Hydrochloride", - "Pamrevlumab", - "Sevacizumab", - "Eltanexor", - "Anti-CD20 Monoclonal Antibody BAT4306F", - "Curcumin", - "Scopoletin", - "Sodium Salicylate", - "Taltobulin", - "Cisplatin Liposomal", - "Anti-HER2 ADC DS-8201a", - "Geranylgeranyltransferase I Inhibitor", - "BCMA/CD3e Tri-specific T-cell Activating Construct HPN217", - "Azathioprine", - "Dianhydrogalactitol", - "Galiximab", - "Piperazinedione", - "Cobimetinib", - "Puquitinib", - "Cevipabulin", - "Gamma-Secretase Inhibitor RO4929097", - "Anti c-KIT Antibody-drug Conjugate LOP628", - "Resiquimod Topical Gel", - "Mitomycin A", - "Deoxycytidine Analogue TAS-109", - "UAE Inhibitor TAK-243", - "Sipuleucel-T", - "Monoclonal Antibody 3622W94", - "IDO-1 Inhibitor LY3381916", - "Ashwagandha Root Powder Extract", - "Telapristone Acetate", - "MET Tyrosine Kinase Inhibitor SGX523", - "Tanibirumab", - "North American Ginseng Extract AFX-2", - "Tidutamab", - "Pictilisib Bismesylate", - "IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051", - "Ciltacabtagene Autoleucel", - "Anti-EGFRvIII/CD3 BiTE Antibody AMG 596", - "HDAC6 Inhibitor KA2507", - "Padeliporfin", - "TGF-beta Receptor 1 Inhibitor PF-06952229", - "Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126", - "Rezivertinib", - "Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017", - "Demecolcine", - "Liarozole Hydrochloride", - "Tocladesine", - "Laromustine", - "Metformin Hydrochloride", - "Ad-RTS-hIL-12", - "Anti-CTLA-4 Monoclonal Antibody AGEN1181", - "Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321", - "Belinostat", - "Piroxantrone", - "Antibody-drug Conjugate ADC XMT-1536", - "Melanoma TRP2 CTL Epitope Vaccine SCIB1", - "Anti-CEACAM1 Monoclonal Antibody CM-24", - "Icotinib Hydrochloride", - "Pipobroman", - "Autologous Anti-PSMA CAR-T Cells P-PSMA-101", - "Broxuridine", - "Huang Lian", - "Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301", - "Copanlisib Hydrochloride", - "Omipalisib", - "Elesclomol Sodium", - "Giloralimab", - "PSMA/CD3 Tri-specific T-cell Activating Construct HPN424", - "Sunitinib", - "Allogeneic Anti-CD20 CAR T-cells LUCAR-20S", - "Babaodan Capsule", - "Verapamil", - "Fas Receptor Agonist APO010", - "Hsp90 Inhibitor TQB3474", - "Anti-nf-P2X7 Antibody Ointment BIL-010t", - "PI3K Inhibitor GDC-0084", - "Tilarginine", - "ADH-1", - "Talabostat", - "Ancitabine Hydrochloride", - "Anti-CD20-engineered Toxin Body MT-3724", - "Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C", - "Cyclin-dependent Kinase Inhibitor PF-06873600", - "Factor VIIa Inhibitor PCI-27483", - "Lexatumumab", - "Aminopterin Sodium", - "Aminoflavone Prodrug AFP464", - "Stallimycin", - "Trimeric GITRL-Fc OMP-336B11", - "Cinacalcet Hydrochloride", - "SHP2 Inhibitor TNO155", - "PI3K Alpha/Beta Inhibitor BAY1082439", - "Acridine Carboxamide", - "Infliximab", - "Monoclonal Antibody A1G4 Anti-Idiotype Vaccine", - "Superoxide Dismutase Mimetic GC4711", - "Immunotoxin CMD-193", - "Tasisulam Sodium", - "AutologousHPV16E7-specificHLA-A*02", - "Levoleucovorin Calcium", - "Radgocitabine Hydrochloride", - "Anti-CD38 Monoclonal Antibody TAK-079", - "EGFR Inhibitor TY-9591", - "Acodazole Hydrochloride", - "Aurora Kinase Inhibitor TTP607", - "EZH2 inhibitor CPI-0209", - "Src/Abl Kinase Inhibitor AZD0424", - "Fluoxymesterone", - "Ovine Submaxillary Mucin", - "Pegylated Liposomal Irinotecan", - "Doxifluridine", - "Gamboge Resin Extract TSB-9-W1", - "Peldesine", - "GM-CSF-encoding Oncolytic Adenovirus CGTG-102", - "Recombinant Human Papillomavirus Nonavalent Vaccine", - "Immune Checkpoint Inhibitor ASP8374", - "Anhydrovinblastine", - "Epothilone KOS-1584", - "Folate Receptor Targeted Epothilone BMS753493", - "Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104", - "Epirubicin", - "Iodine I 131 IPA", - "Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119", - "Zotiraciclib Citrate", - "Fumagillin-Derived Polymer Conjugate XMT-1107", - "Src Kinase Inhibitor KX2-391 Ointment", - "Danvatirsen", - "IGF-methotrexate Conjugate", - "PI3K/mTOR Kinase Inhibitor DS-7423", - "Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809", - "Aprutumab Ixadotin", - "DNA Vaccine VB10.16", - "Mirvetuximab Soravtansine", - "Picoplatin", - "Anti-CTLA-4 Monoclonal Antibody HBM4003", - "Anti-c-Met Antibody-drug Conjugate TR1801", - "BTK Inhibitor LOXO-305", - "Anti-CD37 Bispecific Monoclonal Antibody GEN3009", - "Molibresib Besylate", - "Mirabegron", - "Nilutamide", - "Anti-LIF Monoclonal Antibody MSC-1", - "Src Kinase Inhibitor M475271", - "Anti-PSMA/PBD ADC MEDI3726", - "Carzinophilin", - "Anti-CD3/CD20 Bispecific Antibody GEN3013", - "Ganitumab", - "Quinine", - "c-raf Antisense Oligonucleotide ISIS 5132", - "BTK inhibitor TG-1701", - "Edelfosine", - "Halofuginone Hydrobromide", - "Oncolytic Newcastle Disease Virus MEDI5395", - "PI3K/mTOR Kinase Inhibitor PF-04691502", - "Tegafur-gimeracil-oteracil Potassium", - "Anti-BCMA Antibody-drug Conjugate GSK2857916", - "LMB-7 Immunotoxin", - "Naphthalimide Analogue UNBS5162", - "Ribosome-Inactivating Protein CY503", - "SSTR2-targeting Protein/DM1 Conjugate PEN-221", - "Anti-ErbB3 Monoclonal Antibody AV-203", - "IDO1/TDO2 Inhibitor DN1406131", - "MEK Inhibitor WX-554", - "Sedoxantrone Trihydrochloride", - "Anti-alpha5beta1 Integrin Antibody MINT1526A", - "Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111", - "Survivin-expressing CVD908ssb-TXSVN Vaccine", - "TRPM8 Agonist D-3263", - "Altretamine", - "Anhydrous Enol-oxaloacetate", - "Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011", - "Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107", - "Yang Yin Fu Zheng", - "Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A", - "Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA", - "Inalimarev", - "Magnesium Valproate", - "Tocilizumab", - "Methylprednisolone Acetate", - "SLC6A8 Inhibitor RGX-202", - "Fluvastatin", - "Dociparstat sodium", - "2-Methoxyestradiol", - "Glasdegib Maleate", - "Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E", - "DNMT1 Inhibitor NTX-301", - "Foritinib Succinate", - "Binetrakin", - "Alofanib", - "Agonistic Anti-CD40 Monoclonal Antibody ADC-1013", - "Alpelisib", - "Dabrafenib Mesylate", - "Vincristine Sulfate Liposome", - "HER2 Tri-specific Natural Killer Cell Engager DF1001", - "Protein Arginine Methyltransferase 5 Inhibitor PF-06939999", - "Vandetanib", - "Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918", - "Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244", - "EZH2 Inhibitor SHR2554", - "Oncolytic HSV-1 NV1020", - "AE37 Peptide/GM-CSF Vaccine", - "Edotecarin", - "Alefacept", - "Flutamide", - "Sabatolimab", - "Nilotinib Hydrochloride Monohydrate", - "Sapanisertib", - "Anti-CD73 Monoclonal Antibody NZV930", - "Tucatinib", - "Encelimab", - "Inulin", - "Bcl-2 Inhibitor BGB-11417", - "Ilorasertib", - "Foretinib", - "Anti-EGFR Monoclonal Antibody HLX-07", - "Anti-LGR5 Monoclonal Antibody BNC101", - "c-Met Inhibitor AMG 337", - "Nicotinamide Riboside", - "Bacillus Calmette-Guerin Substrain Connaught Live Antigen", - "Etoposide Phosphate", - "pan-PI3K/mTOR Inhibitor SF1126", - "Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022", - "Anti-CD27 Agonistic Monoclonal Antibody MK-5890", - "Cationic Peptide Cream Cypep-1", - "Cannabidiol", - "Notch Signaling Inhibitor PF-06650808", - "Larotrectinib Sulfate", - "Fluorodopan", - "Hemiasterlin Analog E7974", - "Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752", - "Hexaminolevulinate", - "Ethyleneimine", - "Methotrexate-E Therapeutic Implant", - "Iodine I 131 MIP-1095", - "Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex", - "PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231", - "Sacubitril/Valsartan", - "Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327", - "Taxol Analogue SID 530", - "Multikinase Inhibitor SAR103168", - "LSD1 Inhibitor RO7051790", - "Navicixizumab", - "Calcitriol", - "Sepantronium Bromide", - "Tozasertib Lactate", - "EGFR Mutant-selective Inhibitor TQB3804", - "Dihydrolenperone", - "Pegfilgrastim", - "Ethinyl Estradiol", - "Anti-Denatured Collagen Monoclonal Antibody TRC093", - "Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143", - "DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457", - "Allogeneic Natural Killer Cell Line NK-92", - "Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells", - "Bempegaldesleukin", - "Methoxsalen", - "Procarbazine", - "Betaglucin Gel", - "Engineered Human Umbilical Vein Endothelial Cells AB-205", - "dUTPase/DPD Inhibitor TAS-114", - "Neratinib", - "Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130", - "Phellodendron amurense Bark Extract", - "APC8015F", - "TLR7 Agonist 852A", - "Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002", - "Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F", - "Anti-AGS-16 Monoclonal Antibody AGS-16M18", - "Nanosomal Docetaxel Lipid Suspension", - "Clioquinol", - "Anti-TIM3 Monoclonal Antibody SHR-1702", - "Famitinib", - "PPAR Alpha Antagonist TPST-1120", - "TSP-1 Mimetic Fusion Protein CVX-045", - "Apoptosis Inducer GCS-100", - "ALK Inhibitor", - "Recombinant Macrophage Colony-Stimulating Factor", - "Individualized MVA-based Vaccine TG4050", - "Clinical Trial Agent", - "Tubulin Binding Agent TTI-237", - "Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells", - "Lurtotecan Liposome", - "Anti-IRF4 Antisense Oligonucleotide ION251", - "Dolastatin 15", - "Xiliertinib", - "Lirilumab", - "Silicon Phthalocyanine 4", - "TRK Inhibitor AZD6918", - "Anti-CD352 Antibody-drug Conjugate SGN-CD352A", - "Anti-CD73 Monoclonal Antibody BMS-986179", - "Emactuzumab", - "Galamustine", - "Vatalanib Succinate", - "Antineoplaston AS2-1", - "Dual-affinity B7-H3/CD3-targeted Protein MGD009", - "Margetuximab", - "Anti-EGFR/c-Met Bispecific Antibody EMB-01", - "Alvocidib Hydrochloride", - "Anti-CD19 Monoclonal Antibody MDX-1342", - "Tyrosine Kinase Inhibitor XL228", - "Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome", - "Akt Inhibitor LY2780301", - "Penclomedine", - "FGFR4 Inhibitor H3B-6527", - "Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H", - "Menatetrenone", - "SIRPa-IgG4-Fc Fusion Protein TTI-622", - "VEGFR Inhibitor KRN951", - "mTOR Kinase Inhibitor AZD8055", - "Entospletinib", - "Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b", - "Ovapuldencel-T", - "Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10", - "CSF1R Inhibitor ABSK021", - "mTOR Kinase Inhibitor PP242", - "Gallium-based Bone Resorption Inhibitor AP-002", - "MDM2 Antagonist RO6839921", - "Alvespimycin Hydrochloride", - "8-Azaguanine", - "Autologous CD19-targeted CAR-T Cells GC007F", - "Alanosine", - "Alpha-tocopheryloxyacetic Acid", - "Bisantrene Hydrochloride", - "Monoclonal Antibody 81C6", - "Shark Cartilage Extract AE-941", - "Ruxolitinib Phosphate", - "Anti-PSMA/CD3 Bispecific Antibody CCW702", - "CL 246738", - "Andecaliximab", - "Allogeneic Anti-CD19 CAR T-cells ALLO-501A", - "Anti-FGFR3 Antibody-drug Conjugate LY3076226", - "Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002", - "Idetrexed", - "Tirabrutinib", - "KRAS Mutant-targeting AMG 510", - "Anti-PD-1 Monoclonal Antibody HLX10", - "Anti-PD-L1 Monoclonal Antibody CS1001", - "Capecitabine Rapidly Disintegrating Tablet", - "CD80-Fc Fusion Protein ALPN-202", - "Thiodiglycol", - "Brivudine Phosphoramidate", - "Olinvacimab", - "Anti-MUC16/CD3 BiTE Antibody REGN4018", - "Anti-CD30/DM1 Antibody-drug Conjugate F0002", - "Anti-PD-1/Anti-CTLA4 DART Protein MGD019", - "Oligo-fucoidan", - "Anti-HLA-DR Monoclonal Antibody IMMU-114", - "Interferon Alfacon-1", - "Ponatinib", - "Puromycin", - "Dicycloplatin", - "CD80-Fc Fusion Protein FPT155", - "7-Hydroxystaurosporine", - "BTK Inhibitor ARQ 531", - "Indocyanine Green-labeled Polymeric Micelles ONM-100", - "KRAS G12C Inhibitor GDC-6036", - "PI3Kbeta Inhibitor AZD8186", - "Photodynamic Compound TLD-1433", - "CCR2/CCR5 Antagonist BMS-813160", - "Troglitazone", - "Doxorubicin Prodrug L-377;202", - "Anti-TF Monoclonal Antibody ALT-836", - "Lifileucel", - "Masoprocol", - "Cilengitide", - "Ziv-Aflibercept", - "Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003", - "Cevostamab", - "TGF-beta Receptor 1 Kinase Inhibitor SH3051", - "Larotrectinib", - "Anti-CD19/CD22 CAR NK Cells", - "I 131 Monoclonal Antibody Lym-1", - "ncmtRNA Oligonucleotide Andes-1537", - "Rubitecan", - "Atrasentan Hydrochloride", - "CTLA-4-directed Probody BMS-986249", - "pan-RAF Kinase Inhibitor CCT3833", - "Entolimod", - "PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480", - "Recombinant Human Adenovirus Type 5 H101", - "Personalized Peptide Cancer Vaccine NEO-PV-01", - "Gonadotropin-releasing Hormone Analog", - "Crenolanib Besylate", - "Anti-VEGF/ANG2 Nanobody BI 836880", - "Tepotinib", - "LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1", - "Antibody-drug Conjugate SC-007", - "Idarubicin Hydrochloride", - "Daniquidone", - "Bruceanol F", - "Olvimulogene Nanivacirepvec", - "Mureletecan", - "Pegylated Recombinant L-asparaginase Erwinia chrysanthemi", - "Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046", - "Anti-CD98 Monoclonal Antibody IGN523", - "Anti-c-KIT Monoclonal Antibody CDX 0158", - "Autologous CD19-targeted CAR T Cells JWCAR029", - "G-Quadruplex Stabilizer BMVC", - "Anti-CD40 Monoclonal Antibody SEA-CD40", - "Multikinase Inhibitor 4SC-203", - "Pelitrexol", - "Belapectin", - "Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404", - "Prednisolone", - "Pepinemab", - "Solitomab", - "Enfortumab Vedotin", - "Chromomycin A3", - "Navitoclax", - "Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480", - "Genistein", - "STAT3 Inhibitor OPB-31121", - "Glutaminase Inhibitor CB-839 Hydrochloride", - "Monoclonal Antibody 3F8", - "WT1-A10/AS01B Immunotherapeutic GSK2130579A", - "Rituximab and Hyaluronidase Human", - "Ambazone", - "Anti-PD-L1 Monoclonal Antibody IMC-001", - "Samotolisib", - "BET Bromodomain Inhibitor ZEN-3694", - "DNA-PK inhibitor AZD7648", - "Gutolactone", - "Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230", - "Goserelin Acetate", - "Iodine I 131 Tenatumomab", - "siG12D LODER", - "Alpha Galactosylceramide", - "Lenvatinib Mesylate", - "Cabozantinib", - "ERa36 Modulator Icaritin", - "Anti-CD137 Agonistic Monoclonal Antibody CTX-471", - "Colloidal Gold-Bound Tumor Necrosis Factor", - "Octreotide", - "Autologous CD38-4SCAR-expressing T-cells 4SCAR38", - "Oportuzumab Monatox", - "CEA-MUC-1-TRICOM Vaccine CV301", - "Anti-OX40 Monoclonal Antibody GSK3174998", - "Anti-CD40 Agonist Monoclonal Antibody CDX-1140", - "Nutraceutical TBL-12", - "Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201", - "2-Fluorofucose-containing SGN-2FF", - "Methotrexate Sodium", - "Mofarotene", - "ERK1/2 Inhibitor HH2710", - "Anti-GITR Agonistic Monoclonal Antibody INCAGN01876", - "Atezolizumab", - "Nucleoside Analog DFP-10917", - "SuperagonistInterleukin-15", - "SDF-1 Receptor Antagonist PTX-9908", - "Anti-ErbB3 Antibody ISU104", - "Paxalisib", - "Selective Estrogen Receptor Degrader SRN-927", - "SERD G1T48", - "Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells", - "Betulinic Acid", - "Anti-CD166 Probody-drug Conjugate CX-2009", - "eIF4E Antisense Oligonucleotide ISIS 183750", - "Retrovector Encoding Mutant Anti-Cyclin G1", - "STING Agonist BMS-986301", - "Deuterated Enzalutamide", - "Luminespib", - "Prostaglandin E2 EP4 Receptor Inhibitor E7046", - "Yangzheng Xiaoji Extract", - "Flt3/MerTK Inhibitor MRX-2843", - "Aurora Kinase Inhibitor SNS-314", - "Anti-TROP2 Antibody-drug Conjugate BAT8003", - "Autologous Dendritic Cell Vaccine ACT2001", - "Fosbretabulin Disodium", - "Inactivated Oncolytic Virus Particle GEN0101", - "HIF2a RNAi ARO-HIF2", - "Histrelin Acetate", - "Peplomycin Sulfate", - "Thymopentin", - "Osilodrostat", - "Aurora B Serine/Threonine Kinase Inhibitor TAK-901", - "Aurora Kinase Inhibitor MLN8054", - "Bis(choline)tetrathiomolybdate", - "Modotuximab", - "Polyamine Analogue SBP-101", - "MCL-1 Inhibitor ABBV-467", - "Dovitinib Lactate", - "Anti-CD30/CD16A Monoclonal Antibody AFM13", - "Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342", - "Hsp90 Inhibitor PU-H71", - "LMP-2", - "Cenisertib", - "Anti-Glypican 3/CD3 Bispecific Antibody ERY974", - "Cetuximab-IR700 Conjugate RM-1929", - "Nanoparticle Albumin-Bound Docetaxel", - "Pirotinib", - "Bispecific Antibody MDX447", - "Landogrozumab", - "Fulvestrant", - "Spirogermanium", - "Light-activated AU-011", - "Varlitinib", - "Beta-Thioguanine Deoxyriboside", - "Y 90 Monoclonal Antibody CC49", - "Actinium Ac 225 Lintuzumab", - "Gemtuzumab Ozogamicin", - "HPV16E7-specificHLA-A*02", - "IL4-Pseudomonas Exotoxin Fusion Protein MDNA55", - "Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM", - "PEG-interleukin-2", - "Anti-HB-EGF Monoclonal Antibody KHK2866", - "Firtecan Pegol", - "Tyrosine Kinase Inhibitor SU5402", - "Chk1 Inhibitor CCT245737", - "Ublituximab", - "Imatinib Mesylate", - "Nemorubicin Hydrochloride", - "Anti-FGFR2 Antibody BAY1179470", - "Spebrutinib", - "Tavokinogene Telseplasmid", - "Troxacitabine", - "Triptorelin", - "STING Agonist SB 11285", - "2-Deoxy-D-glucose", - "Anti-EGP-2 Immunotoxin MOC31-PE", - "Aglatimagene Besadenovec", - "Cofetuzumab Pelidotin", - "EGFR/HER2 Inhibitor DZD9008", - "Melanoma Monoclonal Antibody hIgG2A", - "HuaChanSu", - "VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820", - "Tandutinib", - "Brostacillin Hydrochloride", - "Adagloxad Simolenin", - "Anti-GARP Monoclonal Antibody ABBV-151", - "Ibrutinib", - "Chimeric Monoclonal Antibody 81C6", - "Anti-Tissue Factor Monoclonal Antibody MORAb-066", - "Ruxolitinib", - "Anti-PD-1 Monoclonal Antibody AMG 404", - "Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370", - "BTK Inhibitor M7583", - "Iodine I 124 Monoclonal Antibody M5A", - "Doxazosin", - "Alobresib", - "Anti-EGFR/CD16A Bispecific Antibody AFM24", - "Enobosarm", - "Roneparstat", - "Eribulin Mesylate", - "Paclitaxel Vitamin E-Based Emulsion", - "Telratolimod", - "Pirarubicin", - "Thymidylate Synthase Inhibitor CX1106", - "HDAC Inhibitor CXD101", - "Pan-RAF Inhibitor LY3009120", - "Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E", - "Samrotamab Vedotin", - "Anti-CSF1R Monoclonal Antibody IMC-CS4", - "Anti-CSF1R Monoclonal Antibody SNDX-6352", - "Clofarabine", - "Mutant p53 Activator COTI-2", - "Belvarafenib", - "BET Inhibitor CPI-0610", - "Total Androgen Blockade", - "Rebeccamycin", - "Anti-CD73 Monoclonal Antibody CPI-006", - "Amcasertib", - "Anti-OX40 Agonist Monoclonal Antibody ABBV-368", - "Sulforaphane", - "Daratumumab and Hyaluronidase-fihj", - "Dacetuzumab", - "Fludarabine Phosphate", - "HPV E6/E7-encoding Arenavirus Vaccine HB-201", - "Bushen-Jianpi Decoction", - "Engineered Toxin Body Targeting CD38 TAK-169", - "Recombinant Interferon Alfa-1b", - "Oncolytic Virus RP1", - "Anti-CD70 Antibody-Drug Conjugate MDX-1203", - "Anti-sCLU Monoclonal Antibody AB-16B5", - "Flotetuzumab", - "Glucocorticoid Receptor Antagonist ORIC-101", - "Larotinib Mesylate", - "HSP90alpha/beta Inhibitor TAS-116", - "mTOR Kinase Inhibitor CC-223", - "Noscapine Hydrochloride", - "Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A", - "Fedratinib Hydrochloride", - "Anti-BCMA/PBD ADC MEDI2228", - "Beta-lapachone Prodrug ARQ 761", - "Detirelix", - "Staphylococcal Enterotoxin B", - "Vascular Disrupting Agent ZD6126", - "Testolactone", - "Valproic Acid", - "Tigatuzumab", - "Nidanilimab", - "Annamycin", - "Huaier Extract Granule", - "Anaxirone", - "CEA-targeting Agent RG6123", - "Immunocytokine NHS-IL12", - "Nimotuzumab", - "Recombinant Interleukin-2", - "Monoclonal Antibody Hu3S193", - "VEGFR-2 DNA Vaccine VXM01", - "Cixutumumab", - "Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B", - "Dalotuzumab", - "Nanocell-encapsulated miR-16-based microRNA Mimic", - "Alvespimycin", - "Axl/Mer Inhibitor INCB081776", - "Anti-AXL Fusion Protein AVB-S6-500", - "Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191", - "Tipiracil Hydrochloride", - "TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053", - "Hsp90 Inhibitor BIIB021", - "mRNA-derived Prostate Cancer Vaccine CV9104", - "PRMT1 Inhibitor GSK3368715", - "Iodine I 131 Derlotuximab Biotin", - "Erlotinib", - "MOv-gamma Chimeric Receptor Gene", - "Obinutuzumab", - "Estradiol Valerate", - "Luminespib Mesylate", - "ALK/FAK/Pyk2 Inhibitor CT-707", - "AKT 1/2 Inhibitor BAY1125976", - "Onalespib", - "Matuzumab", - "Doxorubicin-loaded EGFR-targeting Nanocells", - "PI3K-beta Inhibitor SAR260301", - "ATR Inhibitor RP-3500", - "Oral Docetaxel", - "Anti-BCMA/CD3 BiTE Antibody AMG 701", - "CXCR4/E-selectin Antagonist GMI-1359", - "PEP-3-KLH Conjugate Vaccine", - "Calicheamicin Gamma 1I", - "Peginterferon Alfa-2b", - "Buthionine Sulfoximine", - "Lobaplatin", - "Paclitaxel Trevatide", - "Toll-like Receptor 7 Agonist DSP-0509", - "Aurora A Kinase Inhibitor LY3295668 Erbumine", - "Dulanermin", - "Doxorubicin", - "Demplatin Pegraglumer", - "Irosustat", - "Itraconazole Dispersion In Polymer Matrix", - "Pemetrexed Disodium", - "Denenicokin", - "Anti-DR5 Agonist Monoclonal Antibody TRA-8", - "Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F", - "Uzansertib", - "Lexibulin", - "Combretastatin A-1", - "Vinblastine Sulfate", - "Boronophenylalanine-Fructose Complex", - "Dromostanolone Propionate", - "Recombinant Bispecific Single-Chain Antibody rM28", - "Risperidone Formulation in Rumenic Acid", - "Samuraciclib", - "Ficlatuzumab", - "MEK Inhibitor TAK-733", - "Anti-Claudin18.2 Monoclonal Antibody TST001", - "Anti-IL-8 Monoclonal Antibody HuMax-IL8", - "Icrucumab", - "Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C", - "Selective Androgen Receptor Modulator RAD140", - "Renal Cell Carcinoma Peptides Vaccine IMA901", - "Zalifrelimab", - "Bicalutamide", - "Paclitaxel Injection Concentrate for Nanodispersion", - "Anti-CD40 Monoclonal Antibody Chi Lob 7/4", - "Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641", - "Parsaclisib Hydrochloride", - "Alectinib", - "Anti-PD-L1/CD137 Bispecific Antibody MCLA-145", - "Patritumab Deruxtecan", - "Tinzaparin Sodium", - "Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081", - "CSF1R Inhibitor PLX73086", - "Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020", - "Abemaciclib", - "Paclitaxel", - "Recombinant Interleukin-13", - "Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141", - "Shu Yu Wan Formula", - "Adenosine A2A/A2B Receptor Antagonist AB928", - "Anti-PD1/CTLA4 Bispecific Antibody XmAb20717", - "FAP/4-1BB-targeting Fusion Protein RO7122290", - "Epitinib Succinate", - "Anti-PD-L1 Monoclonal Antibody LY3300054", - "Sardomozide", - "Acolbifene Hydrochloride", - "Autologous TCR-engineered T-cells IMA201", - "Essiac", - "Monoclonal Antibody AbGn-7", - "PR1 Leukemia Peptide Vaccine", - "Nitric Oxide-Releasing Acetylsalicylic Acid Derivative", - "Extended-release Onapristone", - "Monoclonal Antibody 11D10", - "Entrectinib", - "Anti-CD39 Monoclonal Antibody TTX-030", - "Atorvastatin Sodium", - "Ranolazine", - "Gamma-Secretase Inhibitor LY3039478", - "Bispecific Antibody MDX-H210", - "Neoantigen-based Melanoma-Poly-ICLC Vaccine", - "Anti-LAG3 Monoclonal Antibody TSR-033", - "Avadomide Hydrochloride", - "Cinobufotalin", - "Goserelin", - "Lenzilumab", - "FAP/4-1BB-targeting DARPin MP0310", - "Enterococcus gallinarum Strain MRx0518", - "Tucidinostat", - "Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11", - "Anti-gpA33/CD3 Monoclonal Antibody MGD007", - "Losatuxizumab Vedotin", - "Liothyronine Sodium", - "Paclitaxel Liposome", - "10-Deacetyltaxol", - "Tositumomab", - "EGFR/TGFb Fusion Monoclonal Antibody BCA101", - "Pamiparib", - "Nolatrexed Dihydrochloride", - "Levothyroxine", - "Azaserine", - "Taminadenant", - "Glaucarubolone", - "O-Chloroacetylcarbamoylfumagillol", - "Pentamustine", - "PI3K/mTOR Kinase Inhibitor WXFL10030390", - "Vosilasarm", - "SR-T100 Gel", - "Anti-TIGIT Monoclonal Antibody COM902", - "Hsp90 Inhibitor BIIB028", - "CAR T-Cells AMG 119", - "Elliptinium", - "LSD1 Inhibitor CC-90011", - "Imidazole-Pyrazole", - "PARP Inhibitor NMS-03305293", - "Uncaria tomentosa Extract", - "Topotecan Hydrochloride", - "CYP11A1 Inhibitor ODM-209", - "Buparlisib", - "Sorghum bicolor Supplement", - "Poliglusam", - "Seviteronel", - "CDK7 Inhibitor SY-5609", - "Pyruvate Kinase Inhibitor TLN-232", - "Telisotuzumab", - "Personalized Neoantigen DNA Vaccine GNOS-PVO2", - "CDK2/4/6/FLT3 Inhibitor FN-1501", - "Bcl-2 Inhibitor S65487", - "Spherical Nucleic Acid Nanoparticle NU-0129", - "CDK4/6 Inhibitor BPI-16350", - "Mps1 Inhibitor BAY 1217389", - "Oncolytic HSV-1 G207", - "BRD4 Inhibitor PLX2853", - "Navarixin", - "Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999", - "PEG-Proline-Interferon Alfa-2b", - "VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220", - "NTRK/ROS1 Inhibitor DS-6051b", - "Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12", - "Anti-TIM-3 Monoclonal Antibody BGB-A425", - "Isocoumarin NM-3", - "Cediranib Maleate", - "Carboquone", - "Oral Hsp90 Inhibitor IPI-493", - "Cetuximab Sarotalocan", - "VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593", - "Cinobufagin", - "Cidan Herbal Capsule", - "Artesunate", - "Gamma-delta Tocotrienol", - "Quarfloxin", - "Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125", - "pan-RAF Kinase Inhibitor TAK-580", - "13-Deoxydoxorubicin", - "Bersanlimab", - "Anti-PD-L1 Monoclonal Antibody BGB-A333", - "EGFR/HER1/HER2 Inhibitor PKI166", - "IDO/TDO Inhibitor HTI-1090", - "Neratinib Maleate", - "R-(-)-Gossypol Acetic Acid", - "CDC7 Kinase Inhibitor NMS-1116354", - "Glasdegib", - "Lutetium Lu 177 DOTA-N3-CTT1403", - "Multi-AGC Kinase Inhibitor AT13148", - "Arsenic Trioxide Capsule Formulation ORH 2014", - "Pegilodecakin", - "Medroxyprogesterone Acetate", - "Triamcinolone Acetonide", - "Rucaparib", - "Semaxanib", - "Oral Azacitidine", - "Antibody-drug Conjugate SC-006", - "Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1", - "CD73 Inhibitor AB680", - "Alemtuzumab", - "Topical Fluorouracil", - "ERK Inhibitor LTT462", - "Vopratelimab", - "Anti-PD-1 Monoclonal Antibody MEDI0680", - "Anti-PD-L1 Monoclonal Antibody SHR-1316", - "Tovetumab", - "PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate", - "Ditiocarb", - "Therapeutic Estradiol", - "Aldoxorubicin", - "SERD SAR439859", - "Busulfan", - "Combretastatin A1 Diphosphate", - "Docetaxel-PNP", - "Diazooxonorleucine", - "EGFR Inhibitor AZD3759", - "Anthramycin", - "Alflutinib Mesylate", - "Transdermal 4-Hydroxytestosterone", - "Flumatinib Mesylate", - "Ixazomib Citrate", - "P-TEFb Inhibitor BAY1143572", - "Resveratrol Formulation SRT501", - "Ispinesib", - "Telatinib Mesylate", - "Cergutuzumab Amunaleukin", - "Lyophilized Black Raspberry Saliva Substitute", - "Z-Endoxifen Hydrochloride", - "Anti-DLL4 Monoclonal Antibody MEDI0639", - "Batimastat", - "Sotrastaurin", - "TLR Agonist CADI-05", - "Anti-NaPi2b Monoclonal Antibody XMT-1535", - "Lovastatin", - "Fruquintinib", - "Glioma Lysate Vaccine GBM6-AD", - "Onvansertib", - "Piposulfan", - "ALK Inhibitor WX-0593", - "Xisomab 3G3", - "Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502", - "Deferoxamine Mesylate", - "Estramustine", - "Bermekimab", - "Ingenol Mebutate", - "7-Cyanoquinocarcinol", - "Erlotinib Hydrochloride", - "FASN Inhibitor TVB-2640", - "Chemotherapy", - "Dendritic Cell-Autologous Lung Tumor Vaccine", - "Anti-CTLA-4 Monoclonal Antibody ADU-1604", - "Parsaclisib", - "Monoclonal Antibody CC49-delta CH2", - "BTK Inhibitor DTRMWXHS-12", - "MALT1 Inhibitor JNJ-67856633", - "Pegaspargase", - "Anti-Nucleolin Aptamer AS1411", - "Cemadotin", - "STING-activating Cyclic Dinucleotide Agonist MIW815", - "Autologous Anti-CD19/CD22 CAR T-cells AUTO3", - "Endothelin B Receptor Blocker ENB 003", - "Anti-GITR Monoclonal Antibody MK-4166", - "Loncastuximab Tesirine", - "Etidronate-Cytarabine Conjugate MBC-11", - "Mcl-1 Inhibitor MIK665", - "Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108", - "Anti-HER2 Monoclonal Antibody B002", - "DNA Interference Oligonucleotide PNT2258", - "Dual IGF-1R/InsR Inhibitor BMS-754807", - "Estramustine Phosphate Sodium", - "MMP Inhibitor S-3304", - "Iodine I 131 Monoclonal Antibody muJ591", - "MUC-1/WT1 Peptide-primed Autologous Dendritic Cells", - "mRNA-derived Lung Cancer Vaccine BI 1361849", - "Semuloparin", - "AXL/ FLT3/VEGFR2 Inhibitor KC1036", - "Cyclophosphamide", - "Antibody-drug Conjugate ABBV-176", - "Rivoceranib Mesylate", - "Hsp90 Antagonist KW-2478", - "Necitumumab", - "Oral Microencapsulated Diindolylmethane", - "Picrasinoside H", - "Folate Receptor-Targeted Tubulysin Conjugate EC1456", - "Medorubicin", - "Maekmoondong-tang", - "TGF-beta Receptor 1 Kinase Inhibitor YL-13027", - "Leuprolide Acetate", - "Nanoscale Coordination Polymer Nanoparticles CPI-100", - "Enasidenib Mesylate", - "Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076", - "pan-PIM Kinase Inhibitor NVP-LGB-321", - "Sorafenib", - "Anti-PD-1 Monoclonal Antibody TSR-042", - "Anti-S15 Monoclonal Antibody NC318", - "Apoptosis Inducer BZL101", - "Nivolumab", - "Bruceanol G", - "WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401", - "Prednimustine", - "Epirubicin Hydrochloride", - "Linoleyl Carbonate-Paclitaxel", - "ATR Kinase Inhibitor BAY1895344", - "Vinorelbine Tartrate Emulsion", - "Diphencyprone", - "Chaparrin", - "SNS01-T Nanoparticles", - "Xiaoai Jiedu Decoction", - "PARP/Tankyrase Inhibitor 2X-121", - "p53-HDM2 Interaction Inhibitor MI-773", - "Axl/Mer Inhibitor PF-07265807", - "Anti-EGFR Monoclonal Antibody SCT200", - "FGF/FGFR Pathway Inhibitor E7090", - "Anti-PRL-3 Monoclonal Antibody PRL3-zumab", - "Anti-5T4 Antibody-drug Conjugate ASN004", - "PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521", - "Beta-Carotene", - "Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307", - "Bispecific Antibody 2B1", - "Bizalimogene Ralaplasmid", - "CDK2/5/9 Inhibitor CYC065", - "Garlic", - "Liposome", - "Lutetium Lu 177-DTPA-omburtamab", - "Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes", - "Etanercept", - "BMS-184476", - "Azotomycin", - "Tyrosinase Peptide", - "BCG Vaccine", - "Anti-TIGIT Monoclonal Antibody SGN-TGT", - "Tubulin Inhibitor ALB-109564", - "Procaspase Activating Compound-1 VO-100", - "Pan-FGFR Inhibitor LY2874455", - "Archexin", - "Vinfosiltine", - "Autologous Dendritic Cell-based Immunotherapeutic AV0113", - "Cobolimab", - "Staphylococcal Enterotoxin A", - "Methotrexate", - "Lipid Nanoparticle Encapsulated OX40L mRNA-2416", - "Anti-Met Monoclonal Antibody Mixture Sym015", - "Anti-PRAME Immunotherapeutic GSK2302032A", - "Antineoplastic Vaccine", - "Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120", - "Anti-mesothelin Antibody-drug Conjugate BMS-986148", - "Erdafitinib", - "Anti-VEGFR2 Monoclonal Antibody MSB0254", - "HPV6/11-targeted DNA Plasmid Vaccine INO-3107", - "2;6-Dimethoxyquinone", - "Anti-GITR Agonistic Monoclonal Antibody ASP1951", - "Iadademstat", - "Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352", - "Pravastatin Sodium", - "2-Fluoroadenine", - "Alkotinib", - "MNK1/2 Inhibitor ETC-1907206", - "Syk Inhibitor HMPL-523", - "Integrin alpha-2 Inhibitor E7820", - "Buserelin", - "IGF-1R Inhibitor PL225B", - "Lyso-Thermosensitive Liposome Doxorubicin", - "Anti-CD137 Agonistic Monoclonal Antibody AGEN2373", - "Upamostat", - "Polyethylene Glycol Recombinant Endostatin", - "Anti-GD3 Antibody-drug Conjugate PF-06688992", - "Zorubicin Hydrochloride", - "PI3K-delta Inhibitor SHC014748M", - "Anti-PD-1 Monoclonal Antibody CS1003", - "Pentamethylmelamine", - "Boanmycin Hydrochloride", - "Tretazicar", - "CBP/beta-catenin Modulator E7386", - "Limonene; (+)-", - "Anti-PLGF Monoclonal Antibody TB-403", - "Apilimod Dimesylate Capsule", - "Iniparib", - "Norgestrel", - "Adenosine A2A Receptor Antagonist NIR178", - "Thioureidobutyronitrile", - "Yttrium Y 90-Edotreotide", - "Globo H-DT Vaccine OBI-833", - "Pacmilimab", - "Pixantrone", - "CDC7 Kinase Inhibitor LY3143921 Hydrate", - "Tarenflurbil", - "Rituximab Conjugate CON-4619", - "Toripalimab", - "Anti-GnRH Vaccine PEP223", - "Trimethylcolchicinic Acid", - "Upifitamab", - "5-Aza-4'-thio-2'-deoxycytidine", - "Aurora A Kinase Inhibitor MK5108", - "Poziotinib", - "Mercaptopurine", - "Tariquidar", - "Aryl Hydrocarbon Receptor Antagonist BAY2416964", - "Trametinib", - "Enpromate", - "Lucitanib", - "Dexamethasone Phosphate", - "Liposome-encapsulated miR-34 Mimic MRX34", - "Napabucasin", - "Anlotinib Hydrochloride", - "Anti-PD-L1 Monoclonal Antibody MDX-1105", - "Phosphatidylcholine-Bound Silybin", - "ATR Kinase Inhibitor M1774", - "Brequinar Sodium", - "Ciclopirox Prodrug CPX-POM", - "Gusperimus Trihydrochloride", - "PD-L1/PD-L2/VISTA Antagonist CA-170", - "Anti-CD22 ADC TRPH-222", - "Ralimetinib Mesylate", - "Figitumumab", - "RORgamma Agonist LYC-55716", - "Chlorozotocin", - "Anti-CD32B Monoclonal Antibody BI-1206", - "Dovitinib", - "Gemcitabine-Phosphoramidate Hydrochloride NUC-1031", - "Telomerase Inhibitor FJ5002", - "Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1", - "SHP2 Inhibitor JAB-3068", - "Monoclonal Antibody ASP1948", - "H-ras Antisense Oligodeoxynucleotide ISIS 2503", - "Carotuximab", - "IRAK4 Inhibitor CA-4948", - "Multi-kinase Inhibitor XL092", - "Terfluranol", - "Recombinant Fas Ligand", - "Recombinant Interleukin-18", - "Pancratistatin", - "Dexamethason", - "Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes", - "Class 1/4 Histone Deacetylase Inhibitor OKI-179", - "Anti-CD123/CD3 Bispecific Antibody APVO436", - "iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596", - "PI3K Inhibitor BGT226", - "Apatorsen", - "EGFR Antisense DNA BB-401", - "Rocapuldencel-T", - "Dinutuximab", - "Elisidepsin", - "Extended Release Flucytosine", - "Oncolytic Newcastle Disease Virus Strain PV701", - "V930 Vaccine", - "Liposomal Mitoxantrone Hydrochloride", - "Bleomycin Sulfate", - "Regorafenib", - "Immunomodulatory Agent CC-11006", - "Pasotuxizumab", - "Indibulin", - "Recombinant MIP1-alpha Variant ECI301", - "BRAF/EGFR Inhibitor BGB-283", - "Ras Peptide VAL", - "Copper Gluconate", - "Anti-APRIL Monoclonal Antibody BION-1301", - "Testosterone Enanthate", - "Bryostatin 1", - "Isobrucein B", - "Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024", - "Monoclonal Antibody F19", - "Amustaline Dihydrochloride", - "Cusatuzumab", - "Folitixorin", - "Oleclumab", - "ICT-121 Dendritic Cell Vaccine", - "Hsp90 Inhibitor XL888", - "RhoC Peptide Vaccine RV001V", - "Eicosapentaenoic Acid", - "Lutetium Lu-177 PSMA-R2", - "Recombinant Anti-WT1 Immunotherapeutic GSK2302024A", - "Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101", - "Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV", - "Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736", - "Itraconazole", - "Ribociclib", - "ALK-FAK Inhibitor CEP-37440", - "AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M", - "Emapalumab", - "Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10", - "BET Inhibitor BMS-986158", - "Anti-CD117 Monoclonal Antibody JSP191", - "Carmustine in Ethanol", - "Namirotene", - "Dilpacimab", - "Anti-CA6-DM4 Immunoconjugate SAR566658", - "Poly-gamma Glutamic Acid", - "Actinium Ac 225-FPI-1434", - "Benaxibine", - "Recombinant Human Endostatin", - "Hu14.18-IL2 Fusion Protein EMD 273063", - "Vinorelbine Tartrate Oral", - "Denileukin Diftitox", - "Veliparib", - "SIRPa-4-1BBL Fusion Protein DSP107", - "Micro Needle Array-Doxorubicin", - "Enoticumab", - "Brivanib Alaninate", - "Bcr-Abl Kinase Inhibitor K0706", - "Esorubicin", - "Ifosfamide", - "Inodiftagene Vixteplasmid", - "MDM2 Antagonist ASTX295", - "Broccoli Sprout/Broccoli Seed Extract Supplement", - "Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999", - "TLR7 agonist BNT411", - "CD123-CD33 Compound CAR T Cells", - "Asparaginase", - "Rosopatamab", - "Camptothecin Sodium", - "Febuxostat", - "Tesetaxel", - "Anti-PSCA Monoclonal Antibody AGS-1C4D4", - "PI3K Inhibitor ACP-319", - "Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S", - "Coxsackievirus A21", - "Lutetium Lu 177-PSMA-617", - "Elagolix", - "Azimexon", - "Anti-DKK1 Monoclonal Antibody BHQ880", - "FAK Inhibitor VS-4718", - "PSMA-targeted Tubulysin B-containing Conjugate EC1169", - "Allovectin-7", - "Asulacrine Isethionate", - "ISS 1018 CpG Oligodeoxynucleotide", - "Anti-CLEC12A/CD3 Bispecific Antibody MCLA117", - "Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318", - "SN-38-Loaded Polymeric Micelles NK012", - "Tropomyosin Receptor Kinase Inhibitor AZD7451", - "Aprinocarsen", - "Anti-gremlin-1 Monoclonal Antibody UCB6114", - "Topsalysin", - "Tabalumab", - "Vecabrutinib", - "Human Papillomavirus 16 E7 Peptide/Padre 965.10", - "Camptothecin Analogue TLC388", - "Audencel", - "Fludarabine", - "Anti-CD70 Antibody-drug Conjugate SGN-CD70A", - "Hsp90 Inhibitor MPC-3100", - "Vadimezan", - "Copanlisib", - "GS/pan-Notch Inhibitor AL101", - "Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL", - "Apoptosis Inducer MPC-2130", - "Tetrathiomolybdate", - "Polyamine Analogue PG11047", - "Y 90 Monoclonal Antibody M195", - "Peptide 946 Melanoma Vaccine", - "Axitinib", - "Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130", - "Nazartinib", - "Cabiralizumab", - "Galarubicin", - "Metoprine", - "Monoclonal Antibody HuHMFG1", - "Anti-HER2 Immune Stimulator-antibody Conjugate NJH395", - "Anti-ICOS Monoclonal Antibody MEDI-570", - "Camptothecin", - "BRAF Inhibitor", - "TLR7 Agonist LHC165", - "Crenolanib", - "Delolimogene Mupadenorepvec", - "Decitabine and Cedazuridine", - "Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells", - "Apaziquone", - "Recombinant Fractalkine", - "Bafetinib", - "Berzosertib", - "STING Agonist TAK-676", - "Exicorilant", - "Didox", - "Urabrelimab", - "Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528", - "Lenalidomide", - "Anti-myostatin Monoclonal Antibody LY2495655", - "Autologous Genetically-modified MAGE-A4 C1032 T Cells", - "Masitinib Mesylate", - "Anti-CTLA-4 Monoclonal Antibody ONC-392", - "PRIMA-1 Analog APR-246", - "Protein Arginine Methyltransferase 5 Inhibitor GSK3326595", - "Anti-CD25 Monoclonal Antibody RO7296682", - "Lilotomab", - "EGFR Mutant-specific Inhibitor CK-101", - "Anti-GD2 Monoclonal Antibody MORAb-028", - "Hydroxyprogesterone Caproate", - "Pazopanib", - "Pemetrexed", - "Tapotoclax", - "Anti-CD52 Monoclonal Antibody ALLO-647", - "Anti-VISTA Monoclonal Antibody JNJ 61610588", - "Teglarinad", - "LSD1 Inhibitor IMG-7289", - "Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride", - "2'-F-ara-deoxyuridine", - "Peginterferon Alfa-2a", - "Adenoviral Cancer Vaccine PF-06936308", - "Adenoviral MUC1 Vaccine ETBX-061", - "Src/tubulin Inhibitor KX02", - "Phospholipid Ether-drug Conjugate CLR 131", - "Anti-PD-1 Monoclonal Antibody JTX-4014", - "PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1", - "Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801", - "Mapatumumab", - "Anti-ICOS Agonist Monoclonal Antibody BMS-986226", - "Ezabenlimab", - "Acitretin", - "Nemorubicin", - "Detorubicin", - "Bruceanol C", - "Exatecan Mesylate Anhydrous", - "MET Tyrosine Kinase Inhibitor EMD 1204831", - "Rhenium Re-188 Ethiodized Oil", - "Bendamustine", - "Pegdinetanib", - "Taselisib", - "Treosulfan", - "Lurbinectedin", - "PI3K Inhibitor WX-037", - "Aceglatone", - "Tipapkinogene Sovacivec", - "Autologous Anti-CD19 T-cell Receptor T cells ET190L1", - "Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1", - "Triazene Derivative TriN2755", - "Anti-CD19-DM4 Immunoconjugate SAR3419", - "Spongistatin", - "Filgotinib", - "Linrodostat", - "Sapacitabine", - "Lorvotuzumab Mertansine", - "Irinotecan Hydrochloride", - "JAK2 Inhibitor BMS-911543", - "DAB389 Epidermal Growth Factor", - "N;N-Dibenzyl Daunomycin", - "Talactoferrin Alfa", - "Hsp90 Inhibitor HSP990", - "DPT/BCG/Measles/Serratia/Pneumococcus Vaccine", - "Cintirorgon", - "Autologous Tumor Infiltrating Lymphocytes LN-145", - "STAT3 Inhibitor DSP-0337", - "Selective Estrogen Receptor Degrader LSZ102", - "Yttrium Y 90 Monoclonal Antibody MN-14", - "Oncolytic HSV-1 C134", - "Glembatumumab Vedotin", - "HIF-1alpha Inhibitor PX-478", - "Ganglioside GM2", - "Ruthenium-based Transferrin Targeting Agent NKP-1339", - "Annamycin Liposomal", - "Anti-PD-1 Monoclonal Antibody AK105", - "DI-Leu16-IL2 Immunocytokine", - "Intoplicine", - "MET Kinase Inhibitor OMO-1", - "Oncolytic Newcastle Disease Virus MTH-68H", - "TLR8 Agonist DN1508052", - "Plicamycin", - "PARP7 Inhibitor RBN-2397", - "G Protein-coupled Estrogen Receptor Agonist LNS8801", - "Allosteric ErbB Inhibitor BDTX-189", - "Daporinad", - "Dioscorea nipponica Makino Extract DNE3", - "Antibody-drug Conjugate SC-005", - "Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine", - "Aryl Hydrocarbon Receptor Inhibitor IK-175", - "Pevonedistat", - "Atiprimod", - "CCR2 Antagonist PF-04136309", - "Soy Isoflavones", - "other", - "Filgrastim", - "Lumretuzumab", - "Devimistat", - "Bemarituzumab", - "Tris-acryl Gelatin Microspheres", - "Silmitasertib Sodium", - "alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801", - "Anti-CD37 MMAE Antibody-drug Conjugate AGS67E", - "DPX-E7 HPV Vaccine", - "Eftozanermin Alfa", - "MYC-targeting siRNA DCR-MYC", - "EZH2 Inhibitor CPI-1205", - "Aurora A Kinase Inhibitor TAS-119", - "Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029", - "Enzalutamide", - "Giredestrant", - "Nintedanib", - "Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536", - "PKC-beta Inhibitor MS-553", - "Ras Peptide CYS", - "Anti-TIGIT Monoclonal Antibody BGB-A1217", - "Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300", - "Peplomycin", - "Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704", - "Nanoparticle Albumin-Bound Rapamycin", - "Mitomycin C Analog KW-2149", - "Selective Estrogen Receptor Modulator CC-8490", - "Afatinib Dimaleate", - "Anti-TGF-beta RII Monoclonal Antibody IMC-TR1", - "Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1", - "Aurora Kinase/VEGFR2 Inhibitor CYC116", - "Cabazitaxel", - "FLT3 Inhibitor FF-10101 Succinate", - "HER2 Inhibitor CP-724;714", - "Holmium Ho 166 Poly(L-Lactic Acid) Microspheres", - "Donafenib", - "Irinotecan Sucrosofate", - "Efatutazone Dihydrochloride", - "Artemether Sublingual Spray", - "Autologous AXL-targeted CAR T-cells CCT301-38", - "Mesna", - "Razoxane", - "ERK1/2 Inhibitor JSI-1187", - "CDK4/6 Inhibitor G1T38", - "Gentuximab", - "Idecabtagene Vicleucel", - "RAF Kinase Inhibitor XL281", - "2-Ethylhydrazide", - "Anti-PD-1 Monoclonal Antibody 609A", - "ATM Inhibitor M 3541", - "Polymer-conjugated IL-15 Receptor Agonist NKTR-255", - "DEC-205/NY-ESO-1 Fusion Protein CDX-1401", - "Dezaguanine Mesylate", - "ITK Inhibitor CPI-818", - "Retinol", - "Sodium Stibogluconate", - "Oxcarbazepine", - "Synthetic hTERT DNA Vaccine INO-1400", - "HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201", - "Miltefosine", - "Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172", - "Methionine Aminopeptidase 2 Inhibitor M8891", - "Pinatuzumab Vedotin", - "Polo-like Kinase 1 Inhibitor GSK461364", - "Valemetostat", - "Pemigatinib", - "Combretastatin", - "E2F1 Pathway Activator ARQ 171", - "Opioid Growth Factor", - "Talacotuzumab", - "Lucatumumab", - "EBNA-1 inhibitor VK-2019", - "HDM2 Inhibitor MK-8242", - "Erbulozole", - "Ivaltinostat", - "Sodium Borocaptate", - "Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01", - "Anti-FCRH5/CD3 BiTE Antibody BFCR4350A", - "Thorium Th 227 Anetumab Corixetan", - "Seribantumab", - "Ifetroban", - "Ruxotemitide", - "Tasisulam", - "Transferrin Receptor-Targeted Liposomal p53 cDNA", - "Ivosidenib", - "Vedolizumab", - "Apalutamide", - "11C Topotecan", - "NEDD8 Activating Enzyme E1 Inhibitor TAS4464", - "Carlumab", - "Hycanthone", - "Iodine I 131 Ethiodized Oil", - "Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001", - "BRAF Inhibitor ARQ 736", - "Epipropidine", - "Anti-CD74 Antibody-drug Conjugate STRO-001", - "IDO1 Inhibitor KHK2455", - "Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine", - "BCMA x CD3 T-cell Engaging Antibody CC-93269", - "Bleomycin A2", - "FGFR4 Antagonist INCB062079", - "Larotaxel", - "Antitumor B Key Active Component-alpha", - "Fisogatinib", - "Triptolide Analog", - "Veltuzumab", - "Iproplatin", - "BR96-Doxorubicin Immunoconjugate", - "CD40 Agonist Monoclonal Antibody CP-870;893", - "Cedazuridine/Azacitidine Combination Agent ASTX030", - "L-Gossypol", - "Idronoxil", - "ALK/TRK Inhibitor TSR-011", - "Sparfosate Sodium", - "Tertomotide", - "Triapine", - "MDM2 Inhibitor BI 907828", - "Cancell", - "Tipiracil", - "Epipodophyllotoxin Analog GL331", - "Levetiracetam", - "Indicine-N-Oxide", - "Phosphorus P-32", - "Anti-CD47 Monoclonal Antibody TJC4", - "Yttrium Y 90 Colloid", - "Bcl-2 Inhibitor BCL201", - "PH20 Hyaluronidase-expressing Adenovirus VCN-01", - "7-Ethyl-10-Hydroxycamptothecin", - "Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202", - "Anti-HER2/MMAE Antibody-drug Conjugate MRG002", - "AXL Inhibitor DS-1205c", - "I 131 Monoclonal Antibody CC49", - "Epratuzumab-cys-tesirine", - "Anti-LAMP1 Antibody-drug Conjugate SAR428926", - "Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1", - "Tamoxifen", - "Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142", - "Zalcitabine", - "Triethylenemelamine", - "Oncolytic Virus ASP9801", - "Doxercalciferol", - "Vinorelbine Tartrate", - "Infigratinib", - "mRNA-based Personalized Cancer Vaccine NCI-4650", - "Ruthenium-based Small Molecule Therapeutic BOLD-100", - "Palonosetron Hydrochloride", - "FAK/ALK/ROS1 Inhibitor APG-2449", - "Triazinate", - "CDK4/6 Inhibitor FCN-437", - "Fostriecin", - "Indoximod", - "Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459", - "Plitidepsin", - "Idarubicin", - "Microbiome GEN-001", - "VEGFR2 Tyrosine Kinase Inhibitor PF-00337210", - "Vemurafenib", - "Spiromustine", - "Pioglitazone", - "Lutetium Lu 177 Lilotomab-satetraxetan", - "Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020", - "Raloxifene Hydrochloride", - "Anti-HER2 Bi-specific Monoclonal Antibody ZW25", - "Oral Topotecan Hydrochloride", - "Anti-PD-L1 Monoclonal Antibody FAZ053", - "Synchrotope TA2M Plasmid DNA Vaccine", - "Puquitinib Mesylate", - "Cancer Peptide Vaccine S-588410", - "Radotinib Hydrochloride", - "PGLA/PEG Copolymer-Based Paclitaxel", - "Zirconium Zr 89 Panitumumab", - "Sasanlimab", - "Oral Fludarabine Phosphate", - "Resminostat", - "Mitoclomine", - "VEGF Inhibitor PTC299", - "Rhenium Re-188 Etidronate", - "BMS-188797", - "EED Inhibitor MAK683", - "Anti-FAP/Interleukin-2 Fusion Protein RO6874281", - "Porcupine Inhibitor RXC004", - "Anti-HER2 Antibody-drug Conjugate MEDI4276", - "Anti-RANKL Monoclonal Antibody JMT103", - "Recombinant Modified Vaccinia Ankara-5T4 Vaccine", - "Sorafenib Tosylate", - "Seliciclib", - "c-Met Inhibitor AL2846", - "IGF-1R/IR Inhibitor KW-2450", - "Interferon Alfa-N3", - "MAGE-A3-specific Immunotherapeutic GSK 2132231A", - "Src Kinase Inhibitor AP 23846", - "Acalabrutinib", - "Bemcentinib", - "Paclitaxel Poliglumex", - "Smoothened Antagonist LEQ506", - "Laetrile", - "Simlukafusp Alfa", - "Tigapotide", - "Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T", - "Anti-EGFR Monoclonal Antibody SYN004", - "Anti-AGS-8 Monoclonal Antibody AGS-8M4", - "Autologous Deep IL-15 Primed T-cells TRQ15-01", - "Pelabresib", - "FPV Vaccine CV301", - "BET Inhibitor CC-90010", - "Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules", - "Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100", - "Indisulam", - "Onartuzumab", - "PI3K Inhibitor GDC0077", - "Entinostat", - "JAK1 Inhibitor AZD4205", - "MEK Inhibitor RO4987655", - "PCNU", - "Pelareorep", - "Anti-CD40L Fc-Fusion Protein BMS-986004", - "Tamibarotene", - "Mistletoe Extract", - "Pamidronic Acid", - "Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806", - "Mitotenamine", - "BH3 Mimetic ABT-737", - "Botanical Agent LEAC-102", - "2-Methoxyestrone", - "Polyamine Analog SL11093", - "HPV-6-targeting Immunotherapeutic Vaccine INO-3106", - "Tyrosine Kinase Inhibitor TL-895", - "Denibulin Hydrochloride", - "APE1/Ref-1 Redox Inhibitor APX3330", - "Rofecoxib", - "Vandetanib-eluting Radiopaque Bead BTG-002814", - "VEGFR/FGFR Inhibitor ODM-203", - "Pyruvate Kinase M2 Isoform Activator TP-1454", - "CDK Inhibitor R547", - "BXQ-350 Nanovesicle Formulation", - "Carmofur", - "Attenuated Listeria monocytogenes CRS-100", - "Refametinib", - "Zanubrutinib", - "Quisinostat", - "Elliptinium Acetate", - "Citarinostat", - "Amolimogene Bepiplasmid", - "Clodronic Acid", - "MetAP2 Inhibitor SDX-7320", - "Etaracizumab", - "Pyrazoloacridine", - "Ormaplatin", - "Spanlecortemlocel", - "Oncolytic HSV-1 rRp450", - "Anti-human GITR Monoclonal Antibody AMG 228", - "NG-nitro-L-arginine", - "Pirarubicin Hydrochloride", - "Aerosolized Aldesleukin", - "Mutant-selective EGFR Inhibitor PF-06459988", - "Anti-CD123/CD3 Bispecific Antibody JNJ-63709178", - "Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1)", - "Hsp90 Inhibitor SNX-5542 Mesylate", - "Vilaprisan", - "Selpercatinib", - "Falimarev", - "GBM Antigens and Alloantigens Immunotherapeutic Vaccine", - "Picropodophyllin", - "Toremifene", - "Anti-TIGIT Monoclonal Antibody BMS-986207", - "iPSC-derived CD16-expressing Natural Killer Cells FT516", - "TLR9 Agonist AST-008", - "Burixafor", - "Ametantrone", - "Anti-CTLA-4 Monoclonal Antibody REGN4659", - "Amsacrine Lactate", - "Androgen Receptor Degrader CC-94676", - "Carmustine", - "Methylmercaptopurine Riboside", - "Ascrinvacumab", - "Nedisertib", - "Sam68 Modulator CWP232291", - "Tasadenoturev", - "Monoclonal Antibody HeFi-1", - "Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC", - "Multipeptide Vaccine S-588210", - "Aminocamptothecin Colloidal Dispersion", - "Alisertib", - "Antibody-drug Conjugate SC-003", - "Glesatinib", - "Bi-functional Alkylating Agent VAL-083", - "Autologous Mesenchymal Stem Cells Apceth_101", - "Trastuzumab Duocarmazine", - "Ibritumomab Tiuxetan", - "Brequinar", - "Enadenotucirev", - "BMS-275183", - "Retinyl Acetate", - "Teloxantrone Hydrochloride", - "Ubenimex", - "Topoisomerase-1 Inhibitor LMP744", - "Trofosfamide", - "Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707", - "Epitiostanol", - "Serine/Threonine Kinase Inhibitor XL418", - "Penicillamine", - "Survivin Antigen", - "Ethaselen", - "Futibatinib", - "PLK1 Inhibitor TAK-960", - "Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s", - "Anti-CD19 Monoclonal Antibody MEDI-551", - "Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A", - "Niacinamide", - "MCL-1 Inhibitor AMG 176", - "Depatuxizumab", - "Nucleotide Analog Prodrug NUC-3373", - "Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202", - "Broad-Spectrum Human Papillomavirus Vaccine V505", - "EGb761", - "Topical Celecoxib", - "Anti-IGF-1R Monoclonal Antibody AVE1642", - "Anti-EGFRvIII Immunotoxin MR1-1", - "Ganoderma lucidum Spores Powder Capsule", - "Pseudoisocytidine", - "Ropidoxuridine", - "Anti-PD-L1 Monoclonal Antibody HLX20", - "Vismodegib", - "Monoclonal Antibody Me1-14 F(ab')2", - "FPV-Brachyury-TRICOM Vaccine", - "Fresolimumab", - "Asaley", - "Dual Variable Domain Immunoglobulin ABT-165", - "Deferoxamine", - "Pomalidomide", - "Recombinant Tumor Necrosis Factor-Alpha", - "SHP2 Inhibitor RMC-4630", - "Suramin Sodium", - "Docetaxel Emulsion ANX-514", - "Anti-CD157 Monoclonal Antibody MEN1112", - "Calcium Release-activated Channels Inhibitor RP4010", - "ALK/c-Met Inhibitor TQ-B3139", - "Anti-PD-L1 Monoclonal Antibody BCD-135", - "Palifosfamide", - "Sintilimab", - "Autologous TCR-engineered T-cells IMA203", - "Methylprednisolone", - "Dactolisib", - "Cediranib", - "Filanesib", - "Heparan Sulfate Glycosaminoglycan Mimetic M402", - "Nucleolin Antagonist IPP-204106N", - "TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200", - "BRAF Inhibitor PLX8394", - "F16-IL2 Fusion Protein", - "pan-PI3K Inhibitor CLR457", - "Prednisolone Sodium Phosphate", - "Trimetrexate Glucuronate", - "Daromun", - "Radioactive Iodine", - "Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A", - "Mivobulin Isethionate", - "Marimastat", - "Rhenium Re 188 BMEDA-labeled Liposomes", - "DM-CHOC-PEN", - "Palbociclib", - "Anti-CD33/CD3 Bispecific Antibody JNJ-67571244", - "Defactinib", - "Tomaralimab", - "Anti-HER2-vc0101 ADC PF-06804103", - "Topotecan", - "DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151", - "PI3K-delta Inhibitor INCB050465", - "Ionomycin", - "Pegargiminase", - "Raf Kinase Inhibitor HM95573", - "Sivifene", - "Trapoxin", - "Phenethyl Isothiocyanate-containing Watercress Juice", - "Budigalimab", - "Fotemustine", - "Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A", - "Aurora Kinase Inhibitor AMG 900", - "Polyamine Transport Inhibitor AMXT-1501 Dicaprate", - "Apomab", - "Bisnafide", - "Tiomolibdate Diammonium", - "EZH1/2 Inhibitor DS-3201", - "Nilotinib Hydrochloride Anhydrous", - "I 131 Monoclonal Antibody F19", - "Liposomal SN-38", - "Belantamab Mafodotin", - "NA17.A2 Peptide Vaccine", - "Zandelisib", - "Cyclopentenyl Cytosine", - "Recombinant Adenovirus-p53 SCH-58500", - "Adenosine A2B Receptor Antagonist PBF-1129", - "Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo", - "PI3K/mTOR Kinase Inhibitor VS-5584", - "Anti-ErbB3 Monoclonal Antibody CDX-3379", - "Estrogen Receptor Agonist GTx-758", - "Mercaptopurine Anhydrous", - "Aniline Mustard", - "Girentuximab", - "Protein Arginine Methyltransferase 5 Inhibitor PRT543", - "Bruceantin", - "FGFR Inhibitor TAS-120", - "Nanoparticle Paclitaxel Ointment SOR007", - "Dubermatinib", - "Nucleotide Analogue GS 9219", - "MVA-BN Smallpox Vaccine", - "EGFR Antagonist Hemay022", - "CDC7 Inhibitor TAK-931", - "MAGE-A3 Multipeptide Vaccine GL-0817", - "Mivobulin", - "Src Kinase Inhibitor KX2-391", - "Ginsenoside Rg3 Capsule", - "Rose Bengal Solution PV-10", - "Interleukin-15 Agonist Fusion Protein SHR1501", - "Retinoid 9cUAB30", - "Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine", - "Alpha-Thioguanine Deoxyriboside", - "Monoclonal Antibody SGN-14", - "Splicing Inhibitor H3B-8800", - "Camrelizumab", - "Beta Alethine", - "Plasmid DNA Vaccine pING-hHER3FL", - "Etoposide", - "Hydralazine Hydrochloride", - "Tezacitabine Anhydrous", - "11D10 AluGel Anti-Idiotype Monoclonal Antibody", - "Gossypol Acetic Acid", - "Therapeutic Cancer Vaccine ATP128", - "PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901", - "Anti-CD20 Monoclonal Antibody MIL62", - "STAT3 Inhibitor TTI-101", - "Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine", - "c-Met Inhibitor ABN401", - "Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY)", - "Annonaceous Acetogenins", - "Batabulin", - "Oxidopamine", - "Progestational IUD", - "PTEF-b/CDK9 Inhibitor BAY1251152", - "Imetelstat", - "Valspodar", - "Ingenol Mebutate Gel", - "Mps1 Inhibitor BOS172722", - "Mitoxantrone", - "Anakinra", - "Bleomycin B2", - "Brimonidine Tartrate Nanoemulsion OCU-300", - "CDK4 Inhibitor P1446A-05", - "CDK4/6 Inhibitor SHR6390", - "FLT3/CDK4/6 Inhibitor FLX925", - "Magrolimab", - "Hydroxytyrosol", - "Maraba Oncolytic Virus Expressing Mutant HPV E6/E7", - "MDM2/MDMX Inhibitor ALRN-6924", - "Onalespib Lactate", - "Pegylated Recombinant Human Arginase I BCT-100", - "Mafosfamide", - "Samalizumab", - "Anti-CD30 Monoclonal Antibody MDX-1401", - "Immunomodulator OHR/AVR118", - "Synchrovax SEM Plasmid DNA Vaccine", - "Hexamethylene Bisacetamide", - "Androgen Receptor Antagonist TRC253", - "Selumetinib", - "Cytarabine-asparagine Prodrug BST-236", - "Mycobacterium w", - "Smac Mimetic LCL161", - "FLT3/KIT/CSF1R Inhibitor NMS-03592088", - "Sonolisib", - "Anti-CD45 Monoclonal Antibody AHN-12", - "Pertuzumab", - "Bevacizumab", - "Navoximod", - "Monoclonal Antibody 7C11", - "Anti-EGFRvIII Antibody Drug Conjugate AMG 595", - "DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98", - "Anti-BTLA Monoclonal Antibody TAB004", - "Anti-c-MET Monoclonal Antibody LY2875358", - "12-Allyldeoxoartemisinin", - "Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981", - "BTK Inhibitor CT-1530", - "Anti-CD38-targeted IgG4-attenuated IFNa TAK-573", - "Peposertib", - "Etirinotecan Pegol", - "Tergenpumatucel-L", - "Anti-CEACAM6 Antibody BAY1834942", - "Monoclonal Antibody GD2 Anti-Idiotype Vaccine", - "Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001", - "Anti-FLT3 Monoclonal Antibody IMC-EB10", - "Sotorasib", - "Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044", - "Deoxycytidine Analogue TAS-109 Hydrochloride", - "Nimesulide-Hyaluronic Acid Conjugate CA102N", - "PARP Inhibitor AZD2461", - "Angiopoietin-2-specific Fusion Protein PF-04856884", - "CDK1 Inhibitor BEY1107", - "Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01", - "Ex Vivo-expanded Autologous T Cells IMA101", - "p300/CBP Bromodomain Inhibitor CCS1477", - "PAK4 Inhibitor PF-03758309", - "THL-P", - "Verpasep Caltespen", - "Mercaptopurine Oral Suspension", - "Telaglenastat Hydrochloride", - "Daratumumab", - "WT1 Protein-derived Peptide Vaccine DSP-7888", - "Tegafur", - "c-Met Inhibitor MK8033", - "Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B", - "Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601", - "PEOX-based Polymer Encapsulated Paclitaxel FID-007", - "Benzoylphenylurea", - "BET Inhibitor ABBV-744", - "Sialyl Tn-KLH Vaccine", - "Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968", - "Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701", - "pan FGFR Inhibitor PRN1371", - "Polyunsaturated Fatty Acid", - "Rucaparib Camsylate", - "Transdermal 17beta-Estradiol Gel BHR-200", - "Lometrexol", - "DHEA Mustard", - "Liposomal Cytarabine", - "Orantinib", - "Silibinin", - "Plocabulin", - "p97 Inhibitor CB-5339 Tosylate", - "Lutetium Lu 177 DOTA-Tetulomab", - "Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2", - "Liposome-encapsulated TAAs mRNA Vaccine W_ova1", - "Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414", - "pan-PIM Kinase Inhibitor AZD1208", - "Rogaratinib", - "Zinc Finger Nuclease ZFN-758", - "Fimepinostat", - "6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158", - "Delanzomib", - "Bufalin", - "Bisnafide Dimesylate", - "Selective Estrogen Receptor Degrader AZD9833", - "Pelitinib", - "Mitosis Inhibitor T 1101 Tosylate", - "Muparfostat", - "Pembrolizumab", - "Rivoceranib", - "Denibulin", - "D-methionine Formulation MRX-1024", - "Aprutumab", - "Liarozole", - "Becatecarin", - "Monomethyl Auristatin E", - "Anti-PVRIG Monoclonal Antibody COM701", - "FLT3/KIT Kinase Inhibitor AKN-028", - "Nimustine Hydrochloride", - "Photosensitizer LUZ 11", - "Teloxantrone", - "Berberine Chloride", - "Burosumab", - "Ixabepilone", - "Rilimogene Galvacirepvec/Rilimogene Glafolivec", - "XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410", - "Autologous CD123-4SCAR-expressing T-cells 4SCAR123", - "Docetaxel Lipid Microspheres", - "Multi-epitope HER2 Peptide Vaccine TPIV100", - "Nadofaragene Firadenovec", - "Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201", - "Androgen Receptor Antagonist BAY 1161116", - "ATR Kinase Inhibitor M6620", - "Anti-PGF Monoclonal Antibody RO5323441", - "Clanfenur", - "CAIX Inhibitor DTP348", - "Mifamurtide", - "Amino Acid Injection", - "Suramin", - "Birinapant", - "CD28/ICOS Antagonist ALPN-101", - "Mitoflaxone", - "Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101", - "Mitotane", - "BCMA-CD19 Compound CAR T Cells", - "Streptozocin", - "Fosbretabulin", - "Indomethacin", - "Caracemide", - "Pol I Inhibitor CX5461", - "IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1", - "Narnatumab", - "Vitespen", - "Hsp90 Inhibitor SNX-5422 Mesylate", - "Acyclic Nucleoside Phosphonate Prodrug ABI-1968", - "Etoposide Toniribate", - "Tetrahydrouridine", - "Murizatoclax", - "MDM2 Inhibitor AMGMDS3", - "Bexarotene", - "IL-10 Immunomodulator MK-1966", - "Copper Cu 64-ATSM", - "HSP90-targeted SN-38 Conjugate PEN-866", - "Antibody-drug Conjugate ABBV-085", - "Aviscumine", - "CDK2 Inhibitor PF-07104091", - "Dexanabinol", - "GSK-3 Inhibitor 9-ING-41", - "Recombinant Platelet Factor 4", - "Mirdametinib", - "Perillyl Alcohol", - "Prexasertib", - "Tretinoin Liposome", - "Smac Mimetic GDC-0152", - "HAAH Lambda phage Vaccine SNS-301", - "Dibrospidium Chloride", - "Yttrium Y 90 Monoclonal Antibody Hu3S193", - "STAT3 Inhibitor WP1066", - "Lanreotide Acetate", - "Tarextumab", - "Niraparib Tosylate Monohydrate", - "Polatuzumab Vedotin", - "Monoclonal Antibody 105AD7 Anti-idiotype Vaccine", - "WT1 Peptide Vaccine WT2725", - "Golnerminogene Pradenovec", - "Trioxifene", - "Yttrium Y 90 Glass Microspheres", - "Naxitamab", - "Topoisomerase I Inhibitor LMP400", - "Antrodia cinnamomea Supplement", - "Dolastatin 10", - "Liposomal Vinorelbine Tartrate", - "Sirolimus", - "Xeloda", - "Metformin", - "Farletuzumab", - "Panitumumab", - "Ladirubicin", - "CDK8/19 Inhibitor SEL 120", - "MEK-1/MEKK-1 Inhibitor E6201", - "Monoclonal Antibody 3H1 Anti-Idiotype Vaccine", - "Fadrozole Hydrochloride", - "Endothelin Receptor Type A Antagonist YM598", - "Porfimer Sodium", - "Hydroxychloroquine", - "KRAS-MAPK Signaling Pathway Inhibitor JAB-3312", - "WT1 Peptide Vaccine OCV-501", - "Almurtide", - "Fenretinide Phospholipid Suspension ST-001", - "Ranibizumab", - "14C BMS-275183", - "INO-1001", - "Bushen Culuan Decoction", - "Cladribine", - "Lacutamab", - "Allogeneic Renal Cell Carcinoma Vaccine MGN1601", - "Atamestane", - "Perfosfamide", - "Minretumomab", - "Ramucirumab", - "Anti-HER2 Monoclonal Antibody CT-P6", - "Immunomodulator LAM-003", - "Lapuleucel-T", - "Allogeneic Melanoma Vaccine AGI-101H", - "Anti-CD33/CD3 BiTE Antibody AMG 330", - "Mitoguazone Dihydrochloride", - "Recombinant Human TRAIL-Trimer Fusion Protein SCB-313", - "Anti-LAG3 Monoclonal Antibody BI 754111", - "Nagrestipen", - "Octreotide Pamoate", - "Talimogene Laherparepvec", - "Enzastaurin", - "MEK/Aurora Kinase Inhibitor BI 847325", - "Anastrozole", - "ATM Kinase Inhibitor AZD0156", - "HDAC Inhibitor MPT0E028", - "Laniquidar", - "Lapatinib Ditosylate", - "Marizomib", - "Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001", - "Anti-angiopoietin Monoclonal Antibody AMG 780", - "Naptumomab Estafenatox", - "Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101", - "Ocrelizumab", - "Hormone Therapy", - "XIAP/cIAP1 Antagonist ASTX660", - "Elotuzumab", - "Yttrium Y 90 Resin Microspheres", - "Human Monoclonal Antibody 216", - "Monoclonal Antibody HuPAM4", - "Odronextamab", - "Dihydro-5-Azacytidine", - "SRPK1/ABCG2 Inhibitor SCO-101", - "Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a", - "Guanabenz Acetate", - "Artemisinin Dimer", - "JAK2 Inhibitor AZD1480", - "Zinc Finger Nuclease ZFN-603", - "Colorectal Cancer Peptide Vaccine PolyPEPI1018", - "Sobuzoxane", - "CD40 Agonistic Monoclonal Antibody APX005M", - "Botanical Agent BEL-X-HG", - "Cyclodisone", - "Oral Picoplatin", - "MET Tyrosine Kinase Inhibitor SAR125844", - "siRNA-transfected Peripheral Blood Mononuclear Cells APN401", - "BTK Inhibitor ICP-022", - "DNA-PK/TOR Kinase Inhibitor CC-115", - "Goserelin Acetate Extended-release Microspheres LY01005", - "Tasidotin", - "Phytochlorin Sodium-Polyvinylpyrrolidone Complex", - "Sergiolide", - "Anti-PKN3 siRNA Atu027", - "IL-12-expressing HSV-1 NSC 733972", - "Anti-PD-L1 Monoclonal Antibody A167", - "Orelabrutinib", - "Brontictuzumab", - "Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439", - "Zotatifin", - "Anti-PD-1 Monoclonal Antibody F520", - "Irofulven", - "Akt Inhibitor MK2206", - "Antineoplastic Vaccine GV-1301", - "Modified Vitamin D Binding Protein Macrophage Activator EF-022", - "Glutamine Antagonist DRP-104", - "Anti-LAG-3 Monoclonal Antibody IBI-110", - "Protein Phosphatase 2A Inhibitor LB-100", - "Galectin-1 Inhibitor OTX008", - "Inositol", - "Panobinostat", - "Recombinant Interferon Beta", - "Sonidegib", - "Teprotumumab", - "Immunotherapy Regimen MKC-1106-MT", - "Pan-Mutant-IDH1 Inhibitor Bay-1436032", - "Peretinoin", - "Letetresgene Autoleucel", - "Interleukin-15 Fusion Protein BJ-001", - "Amsacrine", - "MDM2 Inhibitor KRT-232", - "Adenoviral Brachyury Vaccine ETBX-051", - "Anti-c-Met Monoclonal Antibody ARGX-111", - "Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6", - "Briciclib Sodium", - "Liposomal Vinorelbine", - "mTORC1/mTORC2/DHFR Inhibitor ABTL0812", - "Vesencumab", - "Androstane Steroid HE3235", - "HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C", - "PBN Derivative OKN-007", - "Pimitespib", - "Anti-MMP-9 Monoclonal Antibody GS-5745", - "Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055", - "Anti-CD20 Monoclonal Antibody TL011", - "Inebilizumab", - "Anti-PSMA/CD28 Bispecific Antibody REGN5678", - "Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011", - "BET Inhibitor GSK2820151", - "Telisotuzumab Vedotin", - "Losoxantrone", - "Personalized ALL-specific Multi-HLA-binding Peptide Vaccine", - "EZH2 Inhibitor PF-06821497", - "Lutetium Lu-177 Girentuximab", - "Activin Type 2B Receptor Fc Fusion Protein STM 434", - "Kanglaite", - "Phenethyl Isothiocyanate", - "Oligonucleotide SPC2996", - "Liposomal Rhenium Re 186", - "PI3K-beta Inhibitor GSK2636771", - "Deslorelin Acetate", - "PVA Microporous Hydrospheres/Doxorubicin Hydrochloride", - "mRNA-Derived Prostate Cancer Vaccine CV9103", - "Lupartumab Amadotin", - "Gimatecan", - "Hsp90 Inhibitor Debio 0932", - "Methylselenocysteine", - "Iboctadekin", - "Quizartinib", - "Lefitolimod", - "Monoclonal Antibody muJ591", - "Enzastaurin Hydrochloride", - "Anti-CD30 Monoclonal Antibody XmAb2513", - "Futuximab", - "Anti-TIGIT Monoclonal Antibody OMP-313M32", - "Multikinase Inhibitor AT9283", - "Human MOAB LICO 28a32", - "Anti-ILT4 Monoclonal Antibody MK-4830", - "Dacarbazine", - "Cyclin-dependent Kinase 8/19 Inhibitor BCD 115", - "EGFR Mutant-specific Inhibitor ZN-e4", - "Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633", - "PDK1 Inhibitor AR-12", - "Topical Betulinic Acid", - "Platinum Acetylacetonate-Titanium Dioxide Nanoparticles", - "Clodronate Disodium", - "Zinostatin", - "Erythrocyte-encapsulated L-asparaginase Suspension", - "Recombinant Human Plasminogen Kringle 5 Domain ABT 828", - "Forodesine Hydrochloride", - "Rexinoid NRX 194204", - "PI3Kalpha Inhibitor AZD8835", - "Radium Ra 224-labeled Calcium Carbonate Microparticles", - "Dexrazoxane Hydrochloride", - "Nortopixantrone", - "Vulinacimab", - "Zinostatin Stimalamer", - "PIM Kinase Inhibitor LGH447", - "Plamotamab", - "Pomegranate Juice", - "Monoclonal Antibody AK002", - "Vascular Disrupting Agent BNC105", - "IDO/TDO Inhibitor LY-01013", - "Drozitumab", - "Warfarin Sodium", - "Anti-EGFR Monoclonal Antibody Mixture MM-151", - "EGFR T790M Antagonist BPI-15086", - "Cisplatin-E Therapeutic Implant", - "NAMPT Inhibitor OT-82", - "Idasanutlin", - "Timonacic", - "Topical Trichloroacetic Acid", - "Duligotuzumab", - "Liposomal Bcl-2 Antisense Oligonucleotide BP1002", - "Algenpantucel-L", - "Pracinostat", - "pNGVL4a-CRT-E6E7L2 DNA Vaccine", - "Thyroid Extract", - "Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94", - "IAP Inhibitor HGS1029", - "Parvovirus H-1", - "Yttrium Y 90 Monoclonal Antibody BrE-3", - "Anti-TGF-beta Monoclonal Antibody NIS793", - "Thorium Th 227 Anetumab", - "Oral Milataxel", - "Retinyl Palmitate", - "Anti-BCMA/CD3 BiTE Antibody REGN5458", - "Arsenic Trioxide", - "Pegylated SN-38 Conjugate PLX038", - "Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation", - "Liposomal NDDP", - "Wee1 Kinase Inhibitor Debio 0123", - "EGFR/HER2 Inhibitor AV-412", - "Paclitaxel Polymeric Micelle Formulation NANT-008", - "Olmutinib", - "Pegylated Paclitaxel", - "Anti-PD-L1/IL-15 Fusion Protein KD033", - "Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022", - "Mitomycin", - "Anti-PD-1/CTLA-4 Bispecific Antibody AK104", - "Balixafortide", - "Oleandrin", - "Atorvastatin Calcium", - "Mechlorethamine Hydrochloride Gel", - "Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128", - "Autologous NKG2D CAR T-cells CYAD-02", - "Amivantamab", - "Cyclophosphamide Anhydrous", - "Nelarabine", - "Etoprine", - "Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles", - "Patritumab", - "Teroxirone", - "Tyrosinase", - "Varlitinib Tosylate", - "Abemaciclib Mesylate", - "Gedatolisib", - "Autologous Clonal Neoantigen T Cells ATL001", - "CDK/JAK2/FLT3 Inhibitor TG02 Citrate", - "Roquinimex", - "Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715", - "Foslinanib Disodium", - "Autologous BCMA-targeted CAR T Cells LCAR-B4822M", - "Elgemtumab", - "Ensituximab", - "Aranose", - "Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE", - "Axalimogene Filolisbac", - "SIRPa-Fc-CD40L Fusion Protein SL-172154", - "Y 90 Monoclonal Antibody m170", - "Anti-CD205 Antibody-drug Conjugate OBT076", - "Recombinant Bacterial Minicells VAX014", - "Attenuated Measles Virus Encoding SCD Transgene TMV-018", - "Glioblastoma Cancer Vaccine ERC1671", - "Dusigitumab", - "Sodium Metaarsenite", - "Anti-5T4 Antibody-drug Conjugate SYD1875", - "Clivatuzumab", - "Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118", - "Galeterone", - "Recombinant Oncolytic Poliovirus PVS-RIPO", - "Anti-BTN3A Agonistic Monoclonal Antibody ICT01", - "Bleomycin", - "Anti-5T4 Antibody-Drug Conjugate PF-06263507", - "Mcl-1 Inhibitor AZD5991", - "Peptichemio", - "Silatecan AR-67", - "Pexmetinib", - "Recombinant Thyrotropin Alfa", - "Zebularine", - "Antibody-drug Conjugate SC-004", - "Anti-PD-1 Monoclonal Antibody BI 754091", - "Pan-mutation-selective EGFR Inhibitor CLN-081", - "SBIL-2", - "Recombinant Interleukin-6", - "Angiogenesis Inhibitor JI-101", - "Halofuginone", - "Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83", - "Tipifarnib", - "Ras Inhibitor", - "Pralsetinib", - "LSD1 Inhibitor GSK2879552", - "Amatuximab", - "Anti-ILDR2 Monoclonal Antibody BAY 1905254", - "EP4 Antagonist INV-1120", - "Flanvotumab", - "Vaccine-Sensitized Draining Lymph Node Cells", - "Anti-B7H3 Antibody-drug Conjugate MGC018", - "Duvelisib", - "Oncolytic Adenovirus ORCA-010", - "Elinafide", - "Saracatinib", - "HDAC Inhibitor OBP-801", - "Daunorubicin", - "Robatumumab", - "Thiotepa", - "Anti-CD20/CD3 Monoclonal Antibody XmAb13676", - "Pegylated Liposomal Doxorubicin Hydrochloride", - "Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX", - "MUC1-targeted Peptide GO-203-2C", - "Ragifilimab", - "Taladegib", - "Fosgemcitabine Palabenamide", - "Derazantinib", - "Antineoplastic Agent Combination SM-88", - "Henatinib Maleate", - "Cintredekin Besudotox", - "Erastin Analogue PRLX 93936", - "Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208", - "Cytidine Analog RX-3117", - "Lometrexol Sodium", - "SarCNU", - "T900607", - "Autologous Tumor Infiltrating Lymphocytes LN-145-S1", - "Anti-HER3 Antibody-drug Conjugate U3 1402", - "EP4 Antagonist ONO-4578", - "Proxalutamide", - "Halichondrin Analogue E7130", - "P-cadherin-targeting Agent PF-06671008", - "Dupilumab", - "Neoantigen-based Therapeutic Cancer Vaccine GRT-R904", - "Formestane", - "Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101", - "Anti-CD37 Antibody-Drug Conjugate IMGN529", - "Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669", - "Platinum", - "Pibrozelesin", - "Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME", - "Mechlorethamine Hydrochloride", - "Recombinant Super-compound Interferon", - "IL-2 Recombinant Fusion Protein ALT-801", - "Trebananib", - "TLR7/8/9 Antagonist IMO-8400", - "Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine", - "Mirzotamab Clezutoclax", - "Auranofin", - "Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine", - "Pegylated Deoxycytidine Analogue DFP-14927", - "Pentoxifylline", - "PI3Ka/mTOR Inhibitor PKI-179", - "Glutaminase Inhibitor IPN60090", - "Patupilone", - "Tomato-Soy Juice", - "PSMA-targeted Docetaxel Nanoparticles BIND-014", - "Agonistic Anti-OX40 Monoclonal Antibody MEDI6469", - "Vibecotamab", - "Catumaxomab", - "Macitentan", - "Temarotene", - "Rabusertib", - "Tagraxofusp-erzs", - "FLT3 Tyrosine Kinase Inhibitor TTT-3002", - "S-Adenosylmethionine", - "Vonlerolizumab", - "mTORC1/2 Kinase Inhibitor BI 860585", - "Short Chain Fatty Acid HQK-1004", - "Monoclonal Antibody Lym-1", - "Intiquinatine", - "Dacplatinum", - "Vector-peptide Conjugated Paclitaxel", - "Tazemetostat", - "Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205", - "Phosphaplatin PT-112", - "Anti-CD47 ADC SGN-CD47M", - "Imatinib", - "PIM Kinase Inhibitor TP-3654", - "Iodine I 131 Monoclonal Antibody F16SIP", - "HDAC/EGFR/HER2 Inhibitor CUDC-101", - "Prednisone", - "Monoclonal Antibody CEP-37250/KHK2804", - "Lazertinib", - "Mivavotinib", - "Vatalanib", - "Yttrium Y 90 Tabituximab Barzuxetan", - "Zuclomiphene Citrate", - "Autologous Nectin-4/FAP-targeted CAR-T Cells", - "Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4", - "Anti-EGFR Monoclonal Antibody GC1118", - "Liarozole Fumarate", - "Trifluridine and Tipiracil Hydrochloride", - "Coltuximab Ravtansine", - "Daunorubicin Citrate", - "Tubulin Polymerization Inhibitor CKD-516", - "Trastuzumab/Hyaluronidase-oysk", - "DR5 HexaBody Agonist GEN1029", - "CXCR4 Inhibitor Q-122", - "Anti-BCMA/CD3 BiTE Antibody AMG 420", - "Gossypol", - "cEt KRAS Antisense Oligonucleotide AZD4785", - "MET x MET Bispecific Antibody REGN5093", - "Lutetium Lu 177 Monoclonal Antibody CC49", - "Fenretinide", - "Anti-DKK-1 Monoclonal Antibody LY2812176", - "Ifabotuzumab", - "Mibefradil", - "Anti-EGFR Monoclonal Antibody RO5083945", - "Teclistamab", - "Anti-OX40 Agonist Monoclonal Antibody BGB-A445", - "RSK1-4 Inhibitor PMD-026", - "Nitroglycerin Transdermal Patch", - "Plozalizumab", - "Pan-AKT Kinase Inhibitor GSK690693", - "Apitolisib", - "Light-Emitting Oncolytic Vaccinia Virus GL-ONC1", - "Lm-tLLO-neoantigens Vaccine ADXS-NEO", - "Dostarlimab", - "Trodusquemine", - "Noscapine", - "Paclitaxel PPE Microspheres", - "Polyvalent Melanoma Vaccine", - "Decitabine", - "Selective Cytokine Inhibitory Drug CC-1088", - "Ondansetron Hydrochloride", - "Taurultam", - "TRAIL Receptor Agonist ABBV-621", - "Macimorelin", - "Milataxel", - "Tirapazamine", - "Brivudine", - "Arcitumomab", - "Methyltestosterone", - "Irinotecan-Eluting Beads", - "Smac Mimetic GDC-0917", - "Acodazole", - "Anti-CD38 Monoclonal Antibody MOR03087", - "Cenersen", - "FGFR4 Inhibitor FGF401", - "Anti-CD123 Monoclonal Antibody KHK2823", - "Apricoxib", - "Everolimus Tablets for Oral Suspension", - "Liposomal Daunorubicin Citrate", - "Anti-CTLA4 Antibody Fc Fusion Protein KN044", - "Lodapolimab", - "DNA Plasmid Encoding Interleukin-12 INO-9012", - "Anti-IL-15 Monoclonal Antibody AMG 714", - "Lutetium Lu 177-DOTA-EB-TATE", - "Tetradecanoylphorbol Acetate", - "Monoclonal Antibody A33", - "Crizotinib", - "Ropeginterferon Alfa-2B", - "Roniciclib", - "Anti-CD25-PBD Antibody-drug Conjugate ADCT-301", - "Tepoditamab", - "Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19", - "Pioglitazone Hydrochloride", - "Anti-CTLA-4 Monoclonal Antibody MK-1308", - "IAP Inhibitor AT-406", - "Vincristine", - "Prostate Health Cocktail Dietary Supplement", - "Imetelstat Sodium", - "Dactolisib Tosylate", - "hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301", - "Ivuxolimab", - "Denintuzumab Mafodotin", - "Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005", - "Guselkumab", - "Interferon", - "Lonafarnib", - "VEGF/HGF-targeting DARPin MP0250", - "Envafolimab", - "Gastrin Immunotoxin", - "Liothyronine I-131", - "Selitrectinib", - "Anti-CSF1 Monoclonal Antibody PD-0360324", - "Sho-Saiko-To", - "Sacituzumab Govitecan", - "Olutasidenib", - "Imidazole Mustard", - "Oblimersen Sodium", - "Rucaparib Phosphate", - "Tolnidamine", - "Paclitaxel Ceribate", - "Bavituximab", - "ATR Kinase Inhibitor VX-803", - "BCG Tokyo-172 Strain Solution", - "Cabozantinib S-malate", - "FGFR1/2/3 Inhibitor HMPL-453", - "Immunoconjugate RO5479599", - "Nanoparticle-encapsulated Doxorubicin Hydrochloride", - "Pyridyl Cyanoguanidine CHS 828", - "Tallimustine", - "Aminocamptothecin", - "KRASG12C Inhibitor JNJ-74699157", - "PARP 1/2 Inhibitor NOV1401", - "Anti-CLDN6 Monoclonal Antibody ASP1650", - "BET-bromodomain Inhibitor ODM-207", - "Cosibelimab", - "Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002", - "Leucovorin", - "Amrubicin Hydrochloride", - "Mibefradil Dihydrochloride", - "Asunercept", - "Paclitaxel-Loaded Polymeric Micelle", - "Triciribine Phosphate", - "Oxidative Phosphorylation Inhibitor IM156", - "Anti-c-Met Monoclonal Antibody ABT-700", - "Recombinant Leukocyte Interleukin", - "Nilotinib", - "At 211 Monoclonal Antibody 81C6", - "Anti-CD19 Monoclonal Antibody XmAb5574", - "Theliatinib", - "Anti-CTLA-4 Probody BMS-986288", - "Doxorubicin-HPMA Conjugate", - "Bintrafusp Alfa", - "Daunorubicin Hydrochloride", - "Sustained-release Lipid Inhaled Cisplatin", - "pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2", - "Sagopilone", - "MELK Inhibitor OTS167", - "Amonafide L-Malate", - "Anti-TAG-72 Monoclonal Antibody scFV CC-49/218", - "JAK Inhibitor INCB047986", - "MEK 1/2 Inhibitor AS703988/MSC2015103B", - "Oregovomab", - "Nitrogen Mustard Prodrug PR-104", - "PSA/IL-2/GM-CSF Vaccine", - "Anti-Ribonucleoprotein Antibody ATRC-101", - "IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000", - "Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01", - "Balstilimab", - "Anti-HER2 Antibody-drug Conjugate DP303c", - "Carboxyamidotriazole", - "Pharmacological Ascorbate", - "Eftilagimod Alpha", - "Allodepleted T Cell Immunotherapeutic ATIR101", - "mRNA-based Personalized Cancer Vaccine mRNA-4157", - "Talotrexin Ammonium", - "Imgatuzumab", - "Heparin Derivative SST0001", - "DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine", - "Anti-CD19 Antibody-drug Conjugate SGN-CD19B", - "Albumin-binding Cisplatin Prodrug BTP-114", - "Anti-OX40 Antibody BMS 986178", - "Nimodipine", - "Roducitabine", - "Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1", - "Carmustine Sustained-Release Implant Wafer", - "Anti-Met/EGFR Monoclonal Antibody LY3164530", - "Vinflunine", - "Nirogacestat", - "Ipomeanol", - "Anti-EGFR TAP Antibody-drug Conjugate IMGN289", - "Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006", - "Interleukin-12-Fc Fusion Protein DF6002", - "Voxtalisib", - "Imaradenant", - "ALK Inhibitor ASP3026", - "Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466", - "Adecatumumab", - "Lifirafenib", - "ERK1/2 Inhibitor LY3214996", - "MDM2 Antagonist RO5045337", - "Monoclonal Antibody CAL", - "OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule", - "EGFR/VEGFR/RET Inhibitor HA121-28", - "CHK1 Inhibitor MK-8776", - "Beta-Glucan", - "Mitoguazone", - "Daratumumab/rHuPH20", - "Cordycepin", - "Urelumab", - "Deslorelin", - "EGFR Inhibitor PD-168393", - "Mezagitamab", - "PD-L1 Inhibitor INCB086550", - "XPO1 Inhibitor SL-801", - "Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957", - "Anti-HGF Monoclonal Antibody TAK-701", - "Serdemetan", - "Tavolimab", - "Commensal Bacterial Strain Formulation VE800", - "Pegzilarginase", - "Oncolytic Adenovirus Ad5-DNX-2401", - "Anti-VEGF Monoclonal Antibody hPV19", - "Anti-PD-L1 Monoclonal Antibody ZKAB001", - "Oxidative Phosphorylation Inhibitor IACS-010759", - "Tyrosine Kinase Inhibitor OSI-930", - "Darleukin", - "Docetaxel Anhydrous", - "Realgar-Indigo naturalis Formulation", - "NA17-A Antigen", - "Smoothened Antagonist BMS-833923", - "Interferon Beta-1A", - "Anti-TWEAK Monoclonal Antibody RG7212", - "Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123", - "CDK Inhibitor AT7519", - "HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN", - "CDK Inhibitor SNS-032", - "Sodium Phenylbutyrate", - "Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP", - "Tesevatinib", - "Anti-CTLA-4 Monoclonal Antibody BCD-145", - "CD44v6-specific CAR T-cells", - "Ethylnitrosourea", - "Fursultiamine", - "Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC", - "Aspacytarabine", - "Baltaleucel-T", - "Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo", - "Calcium Release-activated Channel Inhibitor CM4620", - "Anti-CD47 Monoclonal Antibody SRF231", - "Viagenpumatucel-L", - "SHP2 Inhibitor RLY-1971", - "Plk1 Inhibitor BI 2536", - "Abituzumab", - "Taurolidine", - "Triplatin Tetranitrate", - "MAGE-A3 Peptide Vaccine", - "Clinical Trial", - "Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302", - "Anti-GD2 Monoclonal Antibody hu14.18K322A", - "Autologous CD20-4SCAR-expressing T-cells 4SCAR20", - "Autologous Anti-CD19 CAR-CD28 T-cells ET019002", - "CCR2 Antagonist CCX872-B", - "EGFR/HER2 Inhibitor AP32788", - "Pan-TRK Inhibitor NOV1601", - "Monalizumab", - "Ofatumumab", - "Asparaginase Erwinia chrysanthemi", - "Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1", - "Muscadine Grape Extract", - "Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a", - "Bexmarilimab", - "Doxorubicin Hydrochloride", - "Idronoxil Suppository NOX66", - "Anti-CD37 Monoclonal Antibody BI 836826", - "Praluzatamab Ravtansine", - "Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A", - "Nanafrocin", - "Caricotamide/Tretazicar", - "Synthetic Long E6/E7 Peptides Vaccine HPV-01", - "HPPH", - "Vantictumab", - "Golotimod", - "CYP17 Lyase Inhibitor ASN001", - "Merbarone", - "Ribozyme RPI.4610", - "Amrubicin", - "MTF-1 Inhibitor APTO-253 HCl", - "Thiarabine", - "Alpha V Beta 1 Inhibitor ATN-161", - "DACH Polymer Platinate AP5346", - "Anti-PD-1 Monoclonal Antibody SCT-I10A", - "Chlorotoxin", - "Iodine I 124 Monoclonal Antibody A33", - "Maytansine", - "Anti-PD-1 Monoclonal Antibody GLS-010", - "Sabarubicin", - "Tocotrienol-rich Fraction", - "Arginase Inhibitor INCB001158", - "Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564", - "Aurora B/C Kinase Inhibitor GSK1070916A", - "Crolibulin", - "Recombinant Human 6Ckine", - "Acai Berry Juice", - "Topotecan Sustained-release Episcleral Plaque", - "Antibody-drug Conjugate PF-06647263", - "Zanolimumab", - "Linsitinib", - "Cryptophycin 52", - "Capmatinib", - "Seocalcitol", - "Batabulin Sodium", - "Actinomycin F1", - "Monoclonal Antibody E2.3", - "C-VISABikDD", - "ASP4132", - "Zalutumumab", - "Anti-LAG-3/PD-L1 Bispecific Antibody FS118", - "Hsp90 Inhibitor AB-010", - "TP40 Immunotoxin", - "Evofosfamide", - "Tilogotamab", - "Enloplatin", - "Androgen Receptor Degrader ARV-110", - "Mechlorethamine", - "Labetuzumab Govitecan", - "Gelonin", - "TAM/c-Met Inhibitor RXDX-106", - "Amsilarotene", - "Vadacabtagene Leraleucel", - "Pegvisomant", - "Tubercidin", - "Acridine", - "Ribociclib/Letrozole", - "Anti-CD33 Monoclonal Antibody BI 836858", - "Sialyl Tn Antigen", - "EGFR/EGFRvIII Inhibitor WSD0922-FU", - "Lestaurtinib", - "FLT3/FGFR Dual Kinase Inhibitor MAX-40279", - "Pan-KRAS Inhibitor BI 1701963", - "Anti-GRP78 Monoclonal Antibody PAT-SM6", - "PIM/FLT3 Kinase Inhibitor SEL24", - "Riviciclib", - "Nocodazole", - "2-O; 3-O Desulfated Heparin", - "Pegylated Liposomal Mitoxantrone Hydrochloride", - "Prinomastat", - "Talmapimod", - "Mevociclib", - "Pexastimogene Devacirepvec", - "Depatuxizumab Mafodotin", - "Relugolix", - "Fosbretabulin Tromethamine", - "Prime Cancer Vaccine MVA-BN-CV301", - "Glutaminase Inhibitor CB-839", - "Anti-A5B1 Integrin Monoclonal Antibody PF-04605412", - "Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257", - "Monoclonal Microbial EDP1503", - "Melapuldencel-T", - "Isatuximab", - "Monoclonal Antibody 11D10 Anti-Idiotype Vaccine", - "STING-expressing E. coli SYNB1891", - "Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010", - "Brivanib", - "Therapeutic Liver Cancer Peptide Vaccine IMA970A", - "Alpha-Gal AGI-134", - "Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum", - "Verubulin", - "Inproquone", - "Moxetumomab Pasudotox", - "Multi-kinase Inhibitor TPX-0022", - "Zelavespib", - "Autologous ROR2-targeted CAR T-cells CCT301-59", - "CEBPA-targeting saRNA MTL-CEBPA Liposome", - "Topotecan Hydrochloride Liposomes", - "Liver X Receptor beta Agonist RGX-104", - "Topoisomerase I Inhibitor Genz-644282", - "Zorubicin", - "mTOR Inhibitor GDC-0349", - "Selective Estrogen Receptor Modulator TAS-108", - "Docetaxel Nanoparticle CPC634", - "A2A Receptor Antagonist EOS100850", - "Anti-LILRB4 Monoclonal Antibody IO-202", - "pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0", - "Interferon-gamma-expressing Adenovirus Vaccine ASN-002", - "Amblyomin-X", - "mTORC 1/2 Inhibitor LXI-15029", - "Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794", - "Methylcantharidimide", - "Darinaparsin", - "Ilixadencel", - "MDM2 Inhibitor AMG-232", - "Imipramine Blue", - "Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01", - "Thioinosine", - "Foslinanib", - "Pazopanib Hydrochloride", - "Wee1 Inhibitor ZN-c3", - "Chaparrinone", - "Asulacrine", - "TrkA Inhibitor VMD-928", - "Tubulin-Binding Agent SSR97225", - "Vinorelbine", - "Custirsen Sodium", - "Vesigenurtucel-L", - "9-Ethyl 6-Mercaptopurine", - "HLA-A*2402-Restricted Multipeptide Vaccine S-488410", - "PI3K Inhibitor ZSTK474", - "Diarylsulfonylurea Compound ILX-295501", - "Glioblastoma Multiforme Multipeptide Vaccine IMA950", - "Autologous Anti-CD19 CAR T-cells IM19", - "B-Raf/VEGFR-2 Inhibitor RAF265", - "Obatoclax Mesylate", - "Savolitinib", - "Adenosine A2A Receptor Antagonist CS3005", - "PARP Inhibitor CEP-9722", - "Penberol", - "Coxsackievirus V937", - "Letolizumab", - "Topoisomerase-II-beta Inhibitor Racemic XK469", - "CXCR4 Antagonist BL-8040", - "Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A", - "HPV E6/E7 DNA Vaccine GX-188E", - "Cirmtuzumab", - "LRP5/6 Antagonist BI 905677", - "2-Hydroxyestrone", - "Ceramide Nanoliposome", - "Altiratinib", - "Yiqi-yangyin-jiedu Herbal Decoction", - "Ombrabulin", - "Tocotrienol", - "Actinomycin C3", - "Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05", - "Anti-EGFR Monoclonal Antibody CPGJ 602", - "Lenvatinib", - "Maackia amurensis Seed Lectin", - "CD47 Antagonist ALX148", - "PI3K-alpha Inhibitor MEN1611", - "Resistant Starch", - "Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine", - "Nelipepimut-S Plus GM-CSF Vaccine", - "Sofituzumab Vedotin", - "Vitamin E Compound", - "Hafnium Oxide-containing Nanoparticles NBTXR3", - "Interferon Gamma-1b", - "Liposome-encapsulated OSI-7904", - "Liposomal Irinotecan", - "PI3K-gamma Inhibitor IPI-549", - "Bromebric Acid", - "Azurin", - "Methoxyamine Hydrochloride", - "MEK Inhibitor PD0325901", - "Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A", - "Anti-NaPi2b Antibody-drug Conjugate XMT-1592", - "Radiolabeled CC49", - "Bisthianostat", - "Cyproterone Acetate", - "Anti-BCMA Antibody-drug Conjugate CC-99712", - "Thalicarpine", - "LOXL2 Inhibitor PAT-1251", - "Roblitinib", - "HIF-2alpha Inhibitor PT2385", - "Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3", - "HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901", - "Bomedemstat", - "Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a", - "Clarithromycin", - "Recombinant MAGE-3.1 Antigen", - "Factor VII-targeting Immunoconjugate Protein ICON-1", - "Venetoclax", - "MEK Inhibitor AZD8330", - "Serplulimab", - "Resiquimod", - "CAB-ROR2-ADC BA3021", - "Merestinib", - "Thalidomide", - "Ispinesib Mesylate", - "Nimustine", - "Vofatamab", - "Angiogenesis Inhibitor GT-111", - "AutologousLMP1/LMP2/EBNA1-specificHLA-A02", - "Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR", - "Chiauranib", - "S-equol", - "Ixazomib", - "mRNA-based TriMix Melanoma Vaccine ECI-006", - "Ritrosulfan", - "CSF-1R Inhibitor BLZ945", - "Trilaciclib", - "Mavorixafor", - "Empesertib", - "Oral Sodium Phenylbutyrate", - "Bivalent BRD4 Inhibitor AZD5153", - "Tubulin Polymerization Inhibitor AEZS 112", - "Dinaciclib", - "Cantrixil", - "Spartalizumab", - "Agatolimod Sodium", - "Rebimastat", - "Eribulin", - "p70S6K/Akt Inhibitor MSC2363318A", - "Pegylated Liposomal Belotecan", - "Amustaline", - "Brostallicin", - "Pralatrexate", - "Imiquimod", - "Adenoviral PSA Vaccine ETBX-071", - "Anti-claudin18.2 Monoclonal Antibody AB011", - "HDM2 Inhibitor HDM201", - "Clostridium Novyi-NT Spores", - "Edodekin alfa", - "FGFR2 Inhibitor RLY-4008", - "Lutetium Lu-177 Capromab", - "Autologous Tumor Infiltrating Lymphocytes LN-144", - "Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10", - "Bispecific Antibody GS-1423", - "Ganglioside GD2", - "Ceralasertib", - "Fluorouracil", - "Rindopepimut", - "Telaglenastat", - "Troxacitabine Nucleotide Prodrug MIV-818", - "Androgen Receptor Antisense Oligonucleotide AZD5312", - "Samarium Sm 153-DOTMP", - "Pyrotinib Dimaleate", - "Pacritinib", - "MET Tyrosine Kinase Inhibitor BMS-777607", - "Ieramilimab", - "Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100", - "Anti-CD3/CD7-Ricin Toxin A Immunotoxin", - "Namodenoson", - "Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013", - "Banoxantrone", - "Bendamustine Hydrochloride", - "Wobe-Mugos E", - "Anti-Ep-CAM Monoclonal Antibody ING-1", - "2-Hydroxyoleic Acid", - "HER2-targeting Antibody Fc Fragment FS102", - "Qilisheng Immunoregulatory Oral Solution", - "ARC Fusion Protein SL-279252", - "Arnebia Indigo Jade Pearl Topical Cream", - "Uracil Ointment", - "Fluorouracil Implant", - "Microbiome-derived Peptide Vaccine EO2401", - "Squalamine Lactate", - "Recombinant Human Apolipoprotein(a) Kringle V MG1102", - "Pibenzimol", - "Survivin Antigen Vaccine DPX-Survivac", - "Uprosertib", - "Fadraciclib", - "Selective Glucocorticoid Receptor Antagonist CORT125281", - "Anti-OX40 Monoclonal Antibody IBI101", - "Budotitane", - "Anti-TIM-3 Monoclonal Antibody Sym023", - "Anti-PD-1/TIM-3 Bispecific Antibody RO7121661", - "RARalpha Agonist IRX5183", - "Raltitrexed", - "ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471", - "Simeprevir", - "LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes", - "Selective Estrogen Receptor Degrader AZD9496", - "Anti-TIM-3 Antibody BMS-986258", - "Immediate-release Tablet Afuresertib", - "RNR Inhibitor COH29", - "Ipatasertib", - "Checkpoint Kinase Inhibitor XL844", - "Chk1 Inhibitor GDC-0425", - "Reparixin", - "Mivebresib", - "Oprozomib", - "Valecobulin", - "Vascular Disrupting Agent BNC105P", - "PV-10", - "Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547", - "Anti-EphA2 Monoclonal Antibody DS-8895a", - "Hedgehog Inhibitor IPI-609", - "Macrocycle-bridged STING Agonist E7766", - "Urokinase-Derived Peptide A6", - "Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001", - "Anti-VEGFC Monoclonal Antibody VGX-100", - "Selective Estrogen Receptor Degrader LY3484356", - "Anti-VEGF Anticalin PRS-050-PEG40", - "Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718", - "2-Methoxyestradiol Nanocrystal Colloidal Dispersion", - "Gemcitabine Hydrochloride", - "unknown", - "Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F", - "Andrographolide", - "Uroacitides", - "Dezapelisib", - "Binimetinib", - "Antibody-drug Conjugate ABBV-838", - "Rituximab", - "Rosiglitazone Maleate", - "BL22 Immunotoxin", - "Monoclonal Antibody 14G2A", - "Metarrestin", - "Etalocib", - "EGFR/FLT3/Abl Inhibitor SKLB1028", - "KSP Inhibitor SB-743921", - "I 131 Monoclonal Antibody A33", - "Blueberry Powder Supplement", - "Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102", - "Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine", - "Anti-HA Epitope Monoclonal Antibody MEDI8852", - "Lung-targeted Immunomodulator QBKPN", - "Shenqi Fuzheng Injection SQ001", - "Cyclodextrin-Based Polymer-Camptothecin CRLX101", - "Anti-HER2-DM1 ADC B003", - "Not Reported", - "Teniposide", - "CD20-CD19 Compound CAR T Cells", - "PSA/PSMA DNA Plasmid INO-5150", - "FGFR Inhibitor Debio 1347", - "Anti-CD44 Monoclonal Antibody RO5429083", - "HM2/MMAE Antibody-Drug Conjugate ALT-P7", - "Anti-PD-1 Fusion Protein AMP-224", - "Numidargistat", - "CDK7 Inhibitor CT7001", - "Melphalan Hydrochloride", - "Tributyrin", - "Manelimab", - "Nurulimab", - "Beauvericin", - "Niraparib", - "HDAC inhibitor CG200745", - "Citatuzumab Bogatox", - "Androgen Receptor Antagonist TAS3681", - "Lapatinib", - "Romidepsin", - "Leurubicin", - "Porcupine Inhibitor CGX1321", - "Dengue Virus Adjuvant PV-001-DV", - "Anti-CD20 Monoclonal Antibody B001", - "Lisavanbulin", - "Seneca Valley Virus-001", - "CHP-NY-ESO-1 Peptide Vaccine IMF-001", - "Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100", - "Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006", - "Transferrin-CRM107", - "Patidegib Topical Gel", - "Porcupine Inhibitor ETC-1922159", - "Autologous BCMA-targeted CAR T Cells CC-98633", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088", - "Clomiphene", - "Bcl-2 Inhibitor LP-108", - "Cedazuridine/Decitabine Combination Agent ASTX727", - "Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement", - "Lutetium Lu 177 PP-F11N", - "c-Met Inhibitor HS-10241", - "Lactoferrin-derived Lytic Peptide LTX-315", - "Concentrated Lingzhi Mushroom Extract", - "Eniluracil/5-FU Combination Tablet", - "Carbogen", - "Yttrium-90 Polycarbonate Brachytherapy Plaque", - "Anthrapyrazole", - "Anti-EGFR/DM1 Antibody-drug Conjugate AVID100", - "Floxuridine", - "Tauromustine", - "Monoclonal Antibody IMMU-14", - "EphA2-targeting Bicycle Toxin Conjugate BT5528", - "Gemcitabine-Releasing Intravesical System", - "Iratumumab", - "Glufosfamide", - "Intetumumab", - "MEK Inhibitor GDC-0623", - "Dexamethasone", - "Marcellomycin", - "Monoclonal Antibody huJ591", - "STAT3 Inhibitor OPB-51602", - "Natural IFN-alpha OPC-18", - "Anti-GITR Monoclonal Antibody GWN 323", - "Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001", - "Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP", - "EGFR Mutant-specific Inhibitor D-0316", - "Polysialic Acid", - "Yttrium Y 90-DOTA-Biotin", - "Neoantigen-based Therapeutic Cancer Vaccine GRT-C903", - "FGF Receptor Antagonist HGS1036", - "Defactinib Hydrochloride", - "Edrecolomab", - "Alvocidib Prodrug TP-1287", - "Pyrotinib", - "Piperine Extract (Standardized)", - "Partially Engineered T-regulatory Cell Donor Graft TRGFT-201", - "Radium Ra 223 Dichloride", - "Linperlisib", - "Liposome-Encapsulated Doxorubicin Citrate", - "Anti-ICOS Agonist Antibody GSK3359609", - "Fimaporfin A", - "Anti-OX40 Agonist Monoclonal Antibody PF-04518600", - "Anti-HER2 Antibody-drug Conjugate RC48", - "ChiNing Decoction", - "Hydroxyurea", - "Monoclonal Antibody A27.15", - "Ets-family Transcription Factor Inhibitor TK216", - "MEK inhibitor CS3006", - "Vintafolide", - "Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A", - "Methionine Aminopeptidase 2 Inhibitor PPI-2458", - "Morinda Citrifolia Fruit Extract", - "Clomesone", - "Topoisomerase-II Inhibitor Racemic XK469", - "Motixafortide", - "Emibetuzumab", - "Anti-CCR7 Antibody-drug Conjugate JBH492", - "Anti-CDH6 Antibody-drug Conjugate HKT288", - "Cisplatin", - "Aurora Kinase Inhibitor BI 811283", - "Checkpoint Kinase Inhibitor AZD7762", - "AKR1C3-activated Prodrug OBI-3424", - "Zanidatamab", - "Acivicin", - "Ilginatinib", - "Dienogest", - "Trabedersen", - "Recombinant Interleukin-12", - "Calaspargase Pegol-mknl", - "Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells", - "Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591", - "Bcr-Abl Kinase Inhibitor PF-114", - "Vinzolidine Sulfate", - "Dendritic Cell Vaccine", - "OX40L-expressing Oncolytic Adenovirus DNX-2440", - "Gimeracil", - "Alacizumab Pegol", - "PRMT5 Inhibitor PRT811", - "Trastuzumab Conjugate BI-CON-02", - "Rosabulin", - "Anti-AXL/PBD Antibody-drug Conjugate ADCT-601", - "Antibody-Drug Conjugate DFRF4539A", - "Everolimus", - "Cactinomycin", - "L-methylfolate", - "Orteronel", - "Autologous Anti-BCMA CAR T-cells PHE885", - "mTOR Kinase Inhibitor OSI-027", - "Pan-TRK Inhibitor ONO-7579", - "Anti-PD-L1 Monoclonal Antibody MSB2311", - "Letrozole", - "Orvacabtagene Autoleucel", - "Yttrium Y-90 Tacatuzumab Tetraxetan", - "Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388", - "Aclarubicin", - "Oral Pancreatic Cancer Vaccine V3-P", - "Spiroplatin", - "Digoxin", - "Anti-FGFR4 Monoclonal Antibody U3-1784", - "HPV-16 E6 Peptides Vaccine/Candida albicans Extract", - "Anti-PD-L1 Monoclonal Antibody CBT-502", - "HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302", - "KRAS G12C Inhibitor MRTX849", - "Mogamulizumab", - "Vistusertib", - "CDC7 Kinase Inhibitor BMS-863233", - "Cord Blood Derived CAR T-Cells", - "TLC ELL-12", - "Varlilumab", - "Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101", - "Bcl-2 Inhibitor APG 2575", - "Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T", - "Tiazofurin", - "Anti-Melanin Monoclonal Antibody PTI-6D2", - "Xentuzumab", - "Avelumab", - "Azaribine", - "Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318", - "Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1", - "Mixed Bacteria Vaccine", - "Vinepidine", - "Bizelesin", - "Anti-GCC Antibody-Drug Conjugate TAK-164", - "Astuprotimut-R", - "Domatinostat", - "Retinoic Acid Agent Ro 16-9100", - "Omacetaxine Mepesuccinate", - "Afuresertib", - "Proapoptotic Sulindac Analog CP-461", - "Bruceanol A", - "Anti-CD70 CAR-expressing T Lymphocytes", - "Anti-HER2 Monoclonal Antibody HLX22", - "PI3K-delta Inhibitor YY-20394", - "Virulizin", - "Molibresib", - "CXCR4 Antagonist USL311", - "Fluvastatin Sodium", - "Birabresib", - "Anti-CD47 Monoclonal Antibody CC-90002", - "Efatutazone", - "Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017", - "Ridaforolimus", - "p53 Peptide Vaccine MPS-128", - "RIPK1 Inhibitor GSK3145095", - "Trans Sodium Crocetinate", - "Anti-PD-1 Checkpoint Inhibitor PF-06801591", - "Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181", - "Istiratumab", - "Rebastinib Tosylate", - "Sizofiran", - "PD-L1 Inhibitor GS-4224", - "Neoantigen-based Glioblastoma Vaccine", - "SERD ZN-c5", - "Allogeneic Anti-CD19 Universal CAR-T Cells CTA101", - "Anti-PD-1 Monoclonal Antibody LZM009", - "SMAC Mimetic BI 891065", - "Anti-NRP1 Antibody ASP1948", - "Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201", - "Gold Sodium Thiomalate", - "CDK9 Inhibitor AZD4573", - "Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa", - "Exemestane", - "iPSC-derived Natural Killer Cells FT500", - "Recombinant Transforming Growth Factor-Beta-2", - "mRNA-derived KRAS-targeted Vaccine V941", - "Padoporfin", - "Dalantercept", - "FLT3/ABL/Aurora Kinase Inhibitor KW-2449", - "Ricolinostat", - "Satraplatin", - "Aurora kinase A/B inhibitor TT-00420", - "Retelliptine", - "Methanol Extraction Residue of BCG", - "Anti-CD47 Monoclonal Antibody IMC-002", - "BMS-214662", - "Jin Fu Kang", - "Ortataxel", - "Polo-like Kinase 1 Inhibitor MK1496", - "GSK-3 Inhibitor LY2090314", - "Bardoxolone", - "Idelalisib", - "Thioguanine", - "Tamoxifen Citrate", - "Bruceanol B", - "Terameprocol", - "Adenosine A2A Receptor Antagonist AZD4635", - "Adavosertib", - "Docetaxel Polymeric Micelles", - "Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135", - "Immunotherapeutic GSK1572932A", - "LMB-2 Immunotoxin", - "Cortisone Acetate", - "Imifoplatin", - "Cerdulatinib", - "2-Hydroxyestradiol", - "Herba Scutellaria Barbata", - "Trastuzumab", - "Pemlimogene Merolisbac", - "Interferon Alfa-N1", - "Tenifatecan", - "Trastuzumab Monomethyl Auristatin F", - "TSP-1 Mimetic ABT-510", - "Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282", - "Estrogens; Conjugated", - "Engineered Toxin Body Targeting HER2 MT-5111", - "Recombinant CD40-Ligand", - "Glofitamab", - "p97 Inhibitor CB-5083", - "Halichondrin B", - "Danusertib", - "Pidilizumab", - "Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343", - "BRD4 Inhibitor PLX51107", - "4-Nitroestrone 3-Methyl Ether", - "Plinabulin", - "Epratuzumab", - "Abiraterone Acetate", - "GS/pan-Notch Inhibitor BMS-986115", - "N-dihydrogalactochitosan", - "c-Met Inhibitor MK2461", - "Prostate Cancer Vaccine ONY-P1", - "p70S6K Inhibitor LY2584702", - "PLK1 Inhibitor CYC140", - "RET Mutation/Fusion Inhibitor BLU-667", - "Retaspimycin Hydrochloride", - "Teglarinad Chloride", - "Captopril", - "Anti-GITR Agonistic Monoclonal Antibody BMS-986156", - "Serabelisib", - "Anti-human GITR Monoclonal Antibody TRX518", - "Elsamitrucin", - "Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225", - "Daclizumab", - "Lintuzumab", - "PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701", - "Anti-DR5 Agonistic Antibody DS-8273a", - "Rociletinib", - "Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522", - "Cetuximab", - "MEK 1/2 Inhibitor FCN-159", - "Selumetinib Sulfate", - "Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19", - "Mycophenolic Acid", - "Anti-LAG3 Monoclonal Antibody MK-4280", - "Notch Signaling Pathway Inhibitor MK0752", - "Arfolitixorin", - "Cytokine-based Biologic Agent IRX-2", - "Porcupine Inhibitor XNW7201", - "Trigriluzole", - "N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea", - "Tin Ethyl Etiopurpurin", - "Threonine Tyrosine Kinase Inhibitor CFI-402257", - "Hydrocortisone Sodium Succinate", - "Anti-CD39 Monoclonal Antibody SRF617", - "Leucovorin Calcium", - "Blinatumomab", - "Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101", - "Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564", - "DNA Minor Groove Binding Agent SG2000", - "Ensartinib", - "Ranimustine", - "Multi-mode Kinase Inhibitor EOC317", - "Synthetic Hypericin", - "Pixantrone Dimaleate", - "CYP17/Androgen Receptor Inhibitor ODM 204", - "Fosifloxuridine Nafalbenamide", - "Vincristine Liposomal", - "EGFR Inhibitor BIBX 1382", - "P-cadherin Inhibitor PCA062", - "Anti-CD19/CD3 Tetravalent Antibody AFM11", - "Monoclonal Antibody 1F5", - "Soy Protein Isolate", - "Itacitinib", - "Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012", - "Anti-ErbB3 Monoclonal Antibody REGN1400", - "Leuprolide", - "Sitravatinib", - "Bazlitoran", - "EZH1/2 Inhibitor HH2853", - "Enasidenib", - "cFMS Tyrosine Kinase Inhibitor ARRY-382", - "USP14/UCHL5 Inhibitor VLX1570", - "Docetaxel", - "Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01", - "Kunecatechins Ointment", - "BCG Solution", - "Calculus bovis/Moschus/Olibanum/Myrrha Capsule", - "Antibody-drug Conjugate SC-002", - "Avdoralimab", - "Cibisatamab", - "Copper Cu 67 Tyr3-octreotate", - "Zibotentan", - "Autologous CD22-4SCAR-expressing T-cells 4SCAR22", - "Oraxol", - "Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG", - "BRAF Inhibitor BGB-3245", - "Telomerase-specific Type 5 Adenovirus OBP-301", - "Anti-SIRPa Monoclonal Antibody CC-95251", - "Rilimogene Glafolivec", - "Docetaxel Formulation CKD-810", - "Prednisolone Acetate", - "Procarbazine Hydrochloride", - "Tyroserleutide", - "Mitozolomide", - "Nogapendekin Alfa", - "Anti-TIM3 Monoclonal Antibody LY3321367", - "Selinexor", - "Allogeneic Anti-CD19-CAR T-cells PBCAR0191", - "Conatumumab", - "Natural Killer Cells ZRx101", - "Elpamotide", - "PI3K-delta Inhibitor AMG 319", - "Tislelizumab", - "Anti-TIM-3 Monoclonal Antibody INCAGN02390", - "Ipilimumab", - "Berubicin Hydrochloride", - "Coenzyme Q10", - "TGFa-PE38 Immunotoxin", - "Naquotinib", - "Anti-KIR Monoclonal Antibody IPH 2101", - "Recombinant Leukoregulin", - "Azacitidine", - "FLT3 Inhibitor HM43239", - "c-Kit Inhibitor PLX9486", - "CDK4/6 Inhibitor HS-10342", - "Lomustine", - "IDO Peptide Vaccine IO102", - "Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine", - "Sustained-release Mitomycin C Hydrogel Formulation UGN-102", - "Ladiratuzumab Vedotin", - "Ambamustine", - "CSF1R Inhibitor DCC-3014", - "Metamelfalan", - "Recombinant Human Angiotensin Converting Enzyme 2 APN01", - "Olaratumab", - "Sodium Iodide I-131", - "Anti-CD47 Monoclonal Antibody Hu5F9-G4", - "Antroquinonol Capsule", - "Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949", - "Alsevalimab", - "Itacitinib Adipate", - "Not Otherwise Specified", - "Anti-PSMA Monoclonal Antibody MDX1201-A488", - "Thymidylate Synthase Inhibitor DFP-11207", - "Tinostamustine", - "Anti-CXCR4 Monoclonal Antibody PF-06747143", - "Ozarelix", - "Milciclib Maleate", - "CDK4/6 Inhibitor CS3002", - "Anti-CD123 ADC IMGN632", - "RET/SRC Inhibitor TPX-0046", - "Triazene Derivative CB10-277", - "Oxaliplatin Eluting Beads", - "Polysaccharide-K", - "Girodazole", - "c-Met Inhibitor MSC2156119J", - "Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx", - "Recombinant Interferon Alfa", - "Guadecitabine", - "CDK7 Inhibitor SY-1365", - "HPV DNA Plasmids Therapeutic Vaccine VGX-3100", - "Theramide", - "Enoblituzumab", - "TRK Inhibitor TQB3558", - "Etarotene", - "Mosunetuzumab", - "Enclomiphene Citrate", - "Zoledronic Acid", - "Duborimycin", - "Cyproterone", - "Synthetic hTERT DNA Vaccine INO-1401", - "St. John's Wort", - "Tranylcypromine Sulfate", - "Polypodium leucotomos Extract", - "Trifluridine", - "Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901", - "Glycooptimized Trastuzumab-GEX", - "Capivasertib", - "Cationic Liposome-Encapsulated Paclitaxel", - "MEK Inhibitor CI-1040", - "DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015", - "Iodine I 131 Tositumomab", - "Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858", - "Monoclonal Antibody m170", - "Etoricoxib", - "Tesidolumab", - "Anti-PD-L1 Monoclonal Antibody CK-301", - "NY-ESO-B", - "IGF-1R Inhibitor", - "HER2-directed TLR8 Agonist SBT6050", - "Iodine I 131 Monoclonal Antibody 81C6", - "Rhenium Re-186 Hydroxyethylidene Diphosphonate", - "Anti-PD-L1 Monoclonal Antibody RC98", - "Opolimogene Capmilisbac", - "Super Enhancer Inhibitor GZ17-6.02", - "Cell Cycle Checkpoint/DNA Repair Antagonist IC83", - "Utomilumab", - "Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110", - "Vanucizumab", - "Mosedipimod", - "Sonepcizumab", - "CD44 Targeted Agent SPL-108", - "Selective Estrogen Receptor Degrader LX-039", - "Bosutinib", - "Liposomal Eribulin Mesylate", - "Pimasertib", - "Pyrazinamide", - "Laprituximab Emtansine", - "2;6-Diaminopurine", - "Diaziquone", - "Anti-B7-H3 Antibody DS-5573a", - "Melphalan Flufenamide", - "Tisagenlecleucel", - "Interleukin Therapy", - "ROBO1-targeted BiCAR-NKT Cells", - "Elacestrant", - "PI3Kdelta Inhibitor GS-9901", - "Fascin Inhibitor NP-G2-044", - "Anti-HER2 Antibody-drug Conjugate ARX788", - "Exatecan Mesylate", - "Carfilzomib", - "Ocaratuzumab", - "Tenalisib", - "Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66", - "Simtuzumab", - "Gemcitabine Elaidate", - "Mavelertinib", - "Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307", - "Gilteritinib Fumarate", - "Rosmantuzumab", - "CXC Chemokine Receptor 2 Antagonist AZD5069", - "Celecoxib", - "Ulocuplumab", - "Autologous CD19-targeted CAR T Cells CC-97540", - "Sodium Butyrate", - "Tegafur-Uracil", - "Anti-PD-1/Anti-LAG-3 DART Protein MGD013", - "Anti-CD38 Monoclonal Antibody SAR442085", - "Anti-IL-1 alpha Monoclonal Antibody MABp1", - "Mitazalimab", - "Dopamine-Somatostatin Chimeric Molecule BIM-23A760", - "AR Antagonist BMS-641988", - "XIAP Antisense Oligonucleotide AEG35156", - "Toremifene Citrate", - "IDO1 Inhibitor PF-06840003", - "LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164", - "Ancitabine", - "Azapicyl", - "Oncolytic HSV1716", - "Ibandronate Sodium", - "Calcium Saccharate", - "Rilimogene Galvacirepvec", - "Y 90 Monoclonal Antibody Lym-1", - "Long-acting Release Pasireotide", - "MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1", - "Dabrafenib", - "IDO1 Inhibitor MK-7162", - "PARP-1/2 Inhibitor ABT-767", - "Idarubicin-Eluting Beads", - "SIRPa-Fc Fusion Protein TTI-621", - "Dihydroorotate Dehydrogenase Inhibitor AG-636", - "EGFR T790M Inhibitor HS-10296", - "Anti-OX40 Hexavalent Agonist Antibody INBRX-106", - "Nesvacumab", - "Abiraterone", - "Navy Bean Powder", - "Personalized Cancer Vaccine RO7198457", - "Cinrebafusp Alfa", - "Pan-IDH Mutant Inhibitor AG-881", - "Brachyury-expressing Yeast Vaccine GI-6301", - "Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323", - "Anti-KSP/Anti-VEGF siRNAs ALN-VSP02", - "KRN5500", - "c-Met Inhibitor AMG 208", - "Tyrosinase-KLH", - "Cycloleucine", - "Fibromun", - "Lorukafusp alfa", - "Irinotecan", - "Patidegib", - "Valrubicin", - "Fluzoparib", - "Anti-HER2-DM1 Antibody-drug Conjugate GQ1001", - "Aclacinomycin B", - "" - ] - }, - "Individual Key": {}, - "Biospecimen Timepoint Type": {}, - "Biospecimen Pathology": { - "enum": [ - "Primary Neoplasm", - "Metastatic Neoplasm", - "unknown", - "Xenograft", - "Not Otherwise Specified", - "Premalignant Neoplasm", - "Not Applicable", - "Not Reported", - "Recurrent Neoplasm", - "" - ] - }, - "Biospecimen Composition": { - "type": "array", - "items": { - "enum": [ - "Metastatic", - "Tumor post-adjuvant therapy", - "Premalignant - in situ", - "Local recurrence", - "Atypia or hyperplasia", - "Not reported", - "Recurrent", - "Normal distant", - "Primary", - "Tumor post-neoadjuvant therapy", - "Xenograft", - "NOS", - "Normal", - "Tissue", - "Not applicable", - "Tumor post-therapy", - "unknown", - "Normal adjacent", - "Additional Primary", - "Premalignant", - "Tumor specimen from de novo untreated malignancy of the bladder", - "" - ] - }, - "maxItems": 21 - }, - "Biospecimen Disease Type": { - "enum": [ - "Leukemias", - "Osseous and Chondromatous Neoplasms", - "Mesothelial Neoplasms", - "Lipomatous Neoplasms", - "Gliomas", - "Synovial-like Neoplasms", - "Adnexal and Skin Appendage Neoplasms", - "Miscellaneous Bone Tumors", - "Not Reported", - "Not Applicable", - "Cystic; Mucinous and Serous Neoplasms", - "Fibromatous Neoplasms", - "Meningiomas", - "Myelodysplastic Syndromes", - "Transitional Cell Papillomas and Carcinomas", - "Trophoblastic neoplasms", - "Immunoproliferative Diseases", - "Neuroepitheliomatous Neoplasms", - "Acinar Cell Neoplasms", - "Nerve Sheath Tumors", - "Mast Cell Neoplasm", - "Myxomatous Neoplasms", - "Complex Mixed and Stromal Neoplasms", - "Epithelial Neoplasms; NOS", - "Neoplasms; NOS", - "Adenomas and Adenocarcinomas", - "Germ Cell Neoplasms", - "Granular Cell Tumors and Alveolar Soft Part Sarcomas", - "Basal Cell Neoplasms", - "Nevi and Melanomas", - "Blood Vessel Tumors", - "Paragangliomas and Glomus Tumors", - "Squamous Cell Neoplasms", - "Giant Cell Tumors", - "Fibroepithelial Neoplasms", - "Odontogenic Tumors", - "Lymphatic Vessel Tumors", - "unknown", - "Not Otherwise Specified", - "Soft Tissue Tumors and Sarcomas; NOS", - "Miscellaneous Tumors", - "Mucoepidermoid Neoplasms", - "Ductal and Lobular Neoplasms", - "Plasma Cell Neoplasm", - "Thymic Epithelial Neoplasms", - "Myomatous Neoplasms", - "" - ] - }, - "Biospecimen Timepoint Offset": {}, - "Biospecimen Last Known Disease Status": { - "enum": [ - "Not Allowed To Collect", - "With Tumor", - "Tumor free", - "Unknown Tumor Status", - "Biochemical evidence of disease without structural correlate", - "Not Applicable", - "Not Reported", - "Distant met recurrence/progression", - "Deceased", - "Loco-regional recurrence/progression", - "" - ] - }, - "Study Key": {}, - "Biospecimen Primary Site": { - "enum": [ - "Tonsil", - "Paranasal Sinus", - "Other and Unspecified Major Salivary Glands ICD-O-3", - "Uterus", - "Adrenal Gland", - "Cervix Uteri", - "Rectosigmoid Region", - "Not Reported", - "Other and Unspecified Female Genital Organs ICD-O-3", - "Other and Ill-Defined Sites in Lip; Oral Cavity and Pharynx ICD-O-3", - "Hypopharynx", - "Thymus Gland", - "Other Endocrine Glands and Related Structures ICD-O-3", - "Brain", - "Testis", - "Larynx", - "Prostate Gland", - "Breast", - "Other and Unspecified Male Genital Organs ICD-O-3", - "Kidney", - "Lung/Bronchus", - "Ovary", - "Limb Skeletal System", - "Colon", - "Skin", - "Parotid Gland", - "Corpus Uteri", - "Lip", - "Palate", - "Vulva", - "Vagina", - "Other and Unspecified Parts of Biliary Tract ICD-O-3", - "Other and Unspecified Urinary Organs ICD-O-3", - "Gingiva", - "Peritoneum and Retroperitoneum", - "Other and Ill Defined Digestive Organs ICD-O-3", - "Oropharynx", - "Esophagus", - "Other and Ill-Defined Sites ICD-O-3", - "Other and Unspecified Parts of Mouth ICD-O-3", - "Renal Pelvis", - "Floor of Mouth", - "Thyroid Gland", - "Bladder", - "Rectum", - "unknown", - "Pancreas", - "Penis", - "Ureter", - "Pyriform Sinus", - "Placenta", - "Meninges", - "Other and Ill-Defined Sites within Respiratory System and Intrathoracic Organs ICD-O-3", - "Stomach", - "Lymph Node", - "Base of the Tongue", - "Nasopharynx", - "Other and Unspecified Parts of Tongue ICD-O-3", - "Trachea", - "Small Intestine", - "Gallbladder", - "" - ] - }, - "Biospecimen Sex": { - "enum": [ - "Decline to answer", - "Don't know", - "Male", - "Female", - "None of these describe me", - "X", - "unknown", - "Prefer not to answer", - "Intersex", - "" - ] - }, - "Biospecimen Tumor Morphology": { - "enum": [ - "8210/2", - "9962/3", - "8374/0", - "9341/1", - "9231/3", - "8580/3", - "8050/2", - "9321/0", - "8902/3", - "9282/0", - "9872/3", - "8046/6", - "9103/0", - "9873/3", - "8580/0", - "8932/0", - "9392/3", - "9836/3", - "9180/3", - "8854/0", - "8856/0", - "9273/0", - "8163/3", - "8971/3", - "9675/3", - "8150/1", - "8600/3", - "8347/3", - 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Extremity", - "Ovary", - "Supraglottis", - "Spleen", - "Fallopian Tube", - "Superior Wall of the Nasopharynx", - "Upper-Inner Quadrant of the Breast", - "Sigmoid Colon", - "Abdomen", - "Bladder Neck", - "Lower Extremity", - "Lateral Wall of the Oropharynx", - "Parathyroid Gland", - "Anal Transitional Zone", - "Lip", - "Axillary Lymph Node", - "Palate", - "Liver", - "Hematopoietic System", - "Submandibular Gland", - "Heart", - "Ampulla of Vater", - "Fundus Uteri", - "Vertebral Column", - "Lateral Wall of the Bladder", - "Lymph Node of Inguinal Region or Leg", - "Pancreatic Duct", - "Renal Pelvis", - "Lesser Curvature of the Stomach", - "Axillary Tail of the Breast", - "Ureter", - "Mucosa of the Upper Lip", - "Mandible", - "Jejunum", - "Lymph Node", - "Body of the Pancreas", - "Spinal Cord", - "Urethra", - "Upper-Outer Quadrant of the Breast", - "Pituitary Gland", - "Islet of Langerhans", - "Anus", - "Nasal Cavity", - "Uterus", - "Isthmus Uteri", - "Main Bronchus", - "Orbit", - "Cecum", - "Mucosa of the Lip", - "Labium Minus", - "Tongue", - "Other Specified Parts of Pancreas", - "Breast", - "Pelvic Lymph Node", - "Prostate Gland", - "Adrenal Medulla", - "Kidney", - "Middle Ear", - "Other and Unspecified Male Genital Organs ICD-O-3", - "Duodenum", - "Cornea", - "Laryngeal Cartilage", - "Prepuce", - "Bone", - "External Upper Lip", - "Meckel Diverticulum", - "External Lip", - "Corpus Uteri", - "Body of Stomach", - "Pelvis", - "Vulva", - "Oropharynx", - "Myometrium", - "Cerebral Hemisphere", - "Upper Respiratory System", - "Lower-Inner Quadrant of the Breast", - "Middle Third of the Esophagus", - "External Lower Lip", - "Tail of the Pancreas", - "Descending Colon", - "Appendix", - "Bladder Trigone", - "Floor of Mouth", - "Sphenoid Sinus", - "Splenic Flexure", - "Salivary Gland", - "Scrotum", - "Frontal Sinus", - "Maxillary Sinus", - "Skin of the Trunk", - "Thyroid Gland", - "Branchial Cleft Remnant", - "Pyriform Sinus", - "Brain Ventricle", - "Male Genitalia", - "Blood", - "Adrenal Cortex", - "Nervous System", - "Vestibule of Mouth", - "Gallbladder", - "Bone Marrow", - "Gastrointestinal Tract", - "Posterior Wall of the Oropharynx", - "Greater Curvature of the Stomach", - "Anal Canal", - "Mucosa of the Lower Lip", - "Middle Lobe of the Right Lung", - "Adrenal Gland", - "Epididymis", - "Lingual Tonsil", - "Posterior Wall of the Nasopharynx", - "Endometrium", - "Eye", - "Skene Gland", - "Autonomic Nervous System", - "Testis", - "Parametrium", - "Extrahepatic Bile Duct", - "Skin of the Upper Limb and Shoulder", - "Thymus Gland", - "Undescended Testes", - "Thorax", - "Retromolar Trigone", - "Cauda Equina", - "Mediastinum", - "Broad Ligament", - "Intra-Abdominal Lymph Node", - "Optic Nerve", - "Ciliary Body", - "Soft Palate", - "Skin", - "Uvula", - "Nipple", - "Urachus", - "Posterior Wall of the Hypopharynx", - "Anterior Wall of the Bladder", - "Vagina", - "Pineal Gland", - "Abdominal Esophagus", - "Lateral Wall of the Nasopharynx", - "Lower Third of the Esophagus", - "Parietal Lobe", - "Sublingual Salivary Gland", - "Posterior Mediastinum", - "Central Portion of the Breast", - "Pleura", - "Eyelid", - "Vallecula", - "Skin of the Scalp and Neck", - "Body of the Penis", - "Dome of the Bladder", - "Primary Site Unknown", - "Biliary Tract", - "Conjunctiva", - "Rectum", - "Pancreas", - "Round Ligament", - "Occipital Lobe", - "Waldeyer Ring", - "Placenta", - "Subglottis", - "Palatine Tonsil", - "Other and Ill-Defined Sites within Respiratory System and Intrathoracic Organs ICD-O-3", - "Upper Gingiva", - "Base of the Tongue", - "Trachea", - "Choroid", - "Postcricoid Region", - "Lower-Outer Quadrant of the Breast", - "Thoracic Esophagus", - "Oral Cavity", - "Skin of the Lower Limb and Hip", - "Anterior Surface of the Epiglottis", - "Cochlear Nerve", - "Cervix Uteri", - "Anterior Mediastinum", - "Hypopharynx", - "Craniopharyngeal Duct", - "Intestine", - "Anterior Wall of the Nasopharynx", - "Cervical Esophagus", - "Ileum", - "External Ear", - "Ill-Defined Anatomic Site", - "Hepatic Flexure", - "Tonsillar Fossa", - "Tonsillar Pillar", - "Peritoneum", - "Clitoris", - "Buccal Mucosa", - "Skin of the Lip", - "Lacrimal Gland", - "Lower Lobe of the Lung", - "Bone of the Extremity", - "Colon", - "Temporal Lobe", - "Ascending Colon", - "Upper Lobe of the Lung", - "Parotid Gland", - "Intrahepatic Bile Duct", - "Antrum Pylori", - "Carotid Body", - "Gingiva", - "Head of the Pancreas", - "Upper Third of the Esophagus", - "Female Genitalia", - "Esophagus", - "Retina", - "Spermatic Cord", - "Frontal Lobe", - "Transverse Colon", - "Cerebral Meninges", - "Labium Majus", - "Bladder", - "Cerebellum", - "Intrathoracic Lymph Node", - "Skin of the Face", - "Glans Penis", - "Brain Stem", - "Urinary System", - "unknown", - "Penis", - "Fundus of the Stomach", - "Endocrine Gland", - "Olfactory Nerve", - "Spinal Meninges", - "Meninges", - "Ureteric Orifice", - "Hard Palate", - "Stomach", - "Ectocervix", - "Head and Neck Lymph Node", - "Nasopharynx", - "Retroperitoneum", - "Small Intestine", - "Paranasal Sinus", - "Reticuloendothelial System", - "" - ] - }, - "Biospecimen Stain": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Biospecimen BioSample Identifier": {}, - "Biospecimen Age at Collection Unit": {}, - "Biospecimen Known Metastasis Sites": { - "enum": [ - "Elbow", - "Vein", - "Lung", - "Glottis", - "Auditory Canal", - "Bile Duct", - "Skull", - "Not Reported", - "Pharynx", - "Femoral Artery", - "Paraspinal Ganglion", - "Cervix", - "Throat", - "Brain", - "Lymph Node(s) Submandibular", - "Foreskin", - "Larynx", - "Pylorus", - "Aortic Body", - "Nasopharynx", - "Scalp", - "Carotid Artery", - "Ovary", - "Supraglottis", - "Spleen", - "Small Finger", - "Fallopian Tube", - "Sigmoid Colon", - "Abdomen", - "Wrist", - "Head & Neck", - "Lymph Node(s) Femoral", - "Lip", - "Esophageal; Distal", - "Neck", - "Aorta", - "Palate", - "Liver", - "Rib", - "Small Bowel", - "Sternum", - "Sinus", - "Nerve(s) Cranial", - "Submandibular Gland", - "Cell-Line", - "Heart", - "Forearm", - "Brow", - "Adenoid", - "Oral Cavity - Mucosa Only", - "Fluid", - "Pericardium", - "Periorbital Soft Tissue", - "Mesentery", - "Prostate", - "Cerebral Cortex", - "Chin", - "Lymph Node(s) Parotid", - "Middle Finger", - "Ureter", - "Hand", - "Mandible", - "Jejunum", - "Calf", - "Pineal", - "Lymph Node", - "Amniotic Fluid", - "Cerebrospinal Fluid", - "Peritoneal Cavity", - "Ring Finger", - "Shoulder", - "Femoral Vein", - "Muscle", - "Chest Wall", - "Esophagus - Mucosa Only", - "Gum", - "Spinal Cord", - "Tibia", - "Pituitary Gland", - "Trachea / Major Bronchi", - "Tonsil", - "Anus", - "Nasal Cavity", - "Abdominal Wall", - "Joint", - "Urethra", - "Uterus", - "Foot", - "Venous", - "Cecum", - "Lymph Node(s) Hilar", - "Ankle", - "Tendon", - "Tongue", - "Breast", - "Epidural Space", - "Kidney", - "Jaw", - "Duodenum", - "Nasal Soft Tissue", - "Parathyroid", - "Retro-Orbital Region", - "Ascending Colon Hepatic Flexure", - "Carina", - "Cerebrum", - "Forehead", - "Thymus", - "Bone", - "Paranasal Sinuses", - "Buttock", - "Vas Deferens", - "Patella", - "Large Bowel", - "Anorectum", - "Pelvis", - "Bronchiole", - "Vulva", - "Sublingual Gland", - "Lymph Node(s) Iliac-External", - "Small Bowel - Mucosa Only", - "Lymph Node(s) Internal Mammary", - "Oropharynx", - "Omentum", - "Fibula", - "Lymph Node(s) Cervical", - "Lymph Node(s) Inguinal", - "Ganglia", - "Bronchus", - "Descending Colon", - "Appendix", - "Stomach - Mucosa Only", - "Sinus(es); Maxillary", - "Splenic Flexure", - "Salivary Gland", - "Scrotum", - "Synovium", - "Urinary Tract", - "Ocular Orbits", - "Acetabulum", - "Colon - Mucosa Only", - "Blood", - "Subcutaneous Tissue", - "Thumb", - "Capillary", - "Maxilla", - "Bone Marrow", - "Gallbladder", - "other", - "Blood Vessel", - "Gastrointestinal Tract", - "Lumbar Spine", - "Trunk", - "Ear; Pinna (External)", - "Lymph Node(s) Regional", - "Knee", - "Esophagogastric Junction", - "Epididymis", - "Lymph Node(s) Distant", - "Lymph Nodes(s) Mediastinal", - "Sacrum", - "Leg", - "Eye", - "Autonomic Nervous System", - "Diaphragm", - "Humerus", - "Testis", - "Hepatic Duct", - "Floor Of Mouth", - "Thorax", - "Lymph Node(s) Mesenteric", - "Not Allowed To Collect", - "Mediastinum", - "Leptomeninges", - "Broad Ligament", - "Hepatic Vein", - "Cardia", - "Laryngopharynx", - "Common Duct", - "Skin", - "Popliteal Fossa", - "Rectosigmoid Junction", - "Thoracic Spine", - "Uvula", - "Seminal Vesicle", - "Sciatic Nerve", - "Ampulla Of Vater", - "Fundus Of Stomach", - "Scapula", - "Vagina", - "Lymph Node(s) Occipital", - "Lymph Node(s) Supraclavicular", - "Pineal Gland", - "Vertebra", - "Lymph Node(s) Subclavicular", - "Lymph Node(s) Scalene", - "Anal Sphincter", - "Lymph Node(s) Splenic", - "Pleura", - "Hip", - "Thigh", - "Ear", - "Hepatic", - "Lymph Node(s) Axilla", - "Groin", - "Occipital Cortex", - "Antecubital Fossa", - "Adrenal", - "Conjunctiva", - "Rectum", - "Pancreas", - "Round Ligament", - "Back", - "Placenta", - "Subglottis", - "Temporal Cortex", - "Spinal Column", - "Hippocampus", - "Oral Cavity", - "Lymph Node(s) Mammary", - "Cartilage", - "Lymph Node(s) Popliteal", - "Retroperitoneum", - "Ligament", - "Index Finger", - "Soft Tissue", - "Hypopharynx", - "Buccal Cavity", - "Fibroblasts", - "Ileum", - "Nails", - "Hepatic Flexure", - "Aqueous Fluid", - "Ischium", - "Peritoneum", - "Lymph Node(s) Paraaortic", - "Clitoris", - "Buccal Mucosa", - "Esophageal; Proximal", - "Lacrimal Gland", - "Arm", - "Artery", - "Axilla", - "Lymph Node(s) Iliac-Common", - "Colon", - "Chest", - "Bowel", - "Ascending Colon", - "Islet Cells", - "Ear Canal", - "Lymph Node(s) Pelvic", - "Nerve", - "Parotid Gland", - "Finger", - "Lymph Node(s) Epitrochlear", - "Carotid Body", - "Frontal Cortex", - "Esophageal; Mid", - "White Blood Cells", - "Umbilical Cord", - "Esophagus", - "Retina", - "Adipose", - "Connective Tissue", - "Frontal Lobe", - "Thyroid", - "Transverse Colon", - "Cervical Spine", - "Skeletal Muscle", - "Antrum", - "Central Nervous System", - "Alveolar Ridge", - "Bladder", - "Cerebellum", - "Ilium", - "Effusion", - "Mediastinal Soft Tissue", - "Brain Stem", - "Femur", - "unknown", - "Dermal", - "Gastroesophageal Junction", - "Penis", - "Endocrine Gland", - "Lymph Node(s) Retroperitoneal", - "Hard Palate", - "Mesothelium", - "Stomach", - "Clavicle", - "Mitochondria", - "Tonsil (Pharyngeal)", - "Head - Face Or Neck; Nos", - "" - ] - }, - "Biospecimen Tumor Subtype": {}, - "Biospecimen Anatomic Site": { - "enum": [ - "Elbow", - "Vein", - "Lung", - "Glottis", - "Auditory Canal", - "Bile Duct", - "Skull", - "Not Reported", - "Pharynx", - "Femoral Artery", - "Paraspinal Ganglion", - "Cervix", - "Throat", - "Brain", - "Lymph Node(s) Submandibular", - "Foreskin", - "Larynx", - "Pylorus", - "Aortic Body", - "Nasopharynx", - "Scalp", - "Carotid Artery", - "Ovary", - "Supraglottis", - "Spleen", - "Small Finger", - "Fallopian Tube", - "Sigmoid Colon", - "Abdomen", - "Wrist", - "Head & Neck", - "Lymph Node(s) Femoral", - "Lip", - "Esophageal; Distal", - "Neck", - "Aorta", - "Palate", - "Liver", - "Rib", - "Small Bowel", - "Sternum", - "Sinus", - "Nerve(s) Cranial", - "Submandibular Gland", - "Cell-Line", - "Heart", - "Forearm", - "Brow", - "Adenoid", - "Oral Cavity - Mucosa Only", - "Fluid", - "Pericardium", - "Periorbital Soft Tissue", - "Mesentery", - "Prostate", - "Cerebral Cortex", - "Chin", - "Lymph Node(s) Parotid", - "Middle Finger", - "Ureter", - "Hand", - "Mandible", - "Jejunum", - "Calf", - "Pineal", - "Lymph Node", - "Amniotic Fluid", - "Cerebrospinal Fluid", - "Peritoneal Cavity", - "Ring Finger", - "Shoulder", - "Femoral Vein", - "Muscle", - "Chest Wall", - "Esophagus - Mucosa Only", - "Gum", - "Spinal Cord", - "Tibia", - "Pituitary Gland", - "Trachea / Major Bronchi", - "Tonsil", - "Anus", - "Nasal Cavity", - "Abdominal Wall", - "Joint", - "Urethra", - "Uterus", - "Foot", - "Venous", - "Cecum", - "Lymph Node(s) Hilar", - "Ankle", - "Tendon", - "Tongue", - "Breast", - "Epidural Space", - "Kidney", - "Jaw", - "Duodenum", - "Nasal Soft Tissue", - "Parathyroid", - "Retro-Orbital Region", - "Ascending Colon Hepatic Flexure", - "Carina", - "Cerebrum", - "Forehead", - "Thymus", - "Bone", - "Paranasal Sinuses", - "Buttock", - "Vas Deferens", - "Patella", - "Large Bowel", - "Anorectum", - "Pelvis", - "Bronchiole", - "Vulva", - "Sublingual Gland", - "Lymph Node(s) Iliac-External", - "Small Bowel - Mucosa Only", - "Lymph Node(s) Internal Mammary", - "Oropharynx", - "Omentum", - "Fibula", - "Lymph Node(s) Cervical", - "Lymph Node(s) Inguinal", - "Ganglia", - "Bronchus", - "Descending Colon", - "Appendix", - "Stomach - Mucosa Only", - "Sinus(es); Maxillary", - "Splenic Flexure", - "Salivary Gland", - "Scrotum", - "Synovium", - "Urinary Tract", - "Ocular Orbits", - "Acetabulum", - "Colon - Mucosa Only", - "Blood", - "Subcutaneous Tissue", - "Thumb", - "Capillary", - "Maxilla", - "Bone Marrow", - "Gallbladder", - "other", - "Blood Vessel", - "Gastrointestinal Tract", - "Lumbar Spine", - "Trunk", - "Ear; Pinna (External)", - "Lymph Node(s) Regional", - "Knee", - "Esophagogastric Junction", - "Epididymis", - "Lymph Node(s) Distant", - "Lymph Nodes(s) Mediastinal", - "Sacrum", - "Leg", - "Eye", - "Autonomic Nervous System", - "Diaphragm", - "Humerus", - "Testis", - "Hepatic Duct", - "Floor Of Mouth", - "Thorax", - "Lymph Node(s) Mesenteric", - "Not Allowed To Collect", - "Mediastinum", - "Leptomeninges", - "Broad Ligament", - "Hepatic Vein", - "Cardia", - "Laryngopharynx", - "Common Duct", - "Skin", - "Popliteal Fossa", - "Rectosigmoid Junction", - "Thoracic Spine", - "Uvula", - "Seminal Vesicle", - "Sciatic Nerve", - "Ampulla Of Vater", - "Fundus Of Stomach", - "Scapula", - "Vagina", - "Lymph Node(s) Occipital", - "Lymph Node(s) Supraclavicular", - "Pineal Gland", - "Vertebra", - "Lymph Node(s) Subclavicular", - "Lymph Node(s) Scalene", - "Anal Sphincter", - "Lymph Node(s) Splenic", - "Pleura", - "Hip", - "Thigh", - "Ear", - "Hepatic", - "Lymph Node(s) Axilla", - "Groin", - "Occipital Cortex", - "Antecubital Fossa", - "Adrenal", - "Conjunctiva", - "Rectum", - "Pancreas", - "Round Ligament", - "Back", - "Placenta", - "Subglottis", - "Temporal Cortex", - "Spinal Column", - "Hippocampus", - "Oral Cavity", - "Lymph Node(s) Mammary", - "Cartilage", - "Lymph Node(s) Popliteal", - "Retroperitoneum", - "Ligament", - "Index Finger", - "Soft Tissue", - "Hypopharynx", - "Buccal Cavity", - "Fibroblasts", - "Ileum", - "Nails", - "Hepatic Flexure", - "Aqueous Fluid", - "Ischium", - "Peritoneum", - "Lymph Node(s) Paraaortic", - "Clitoris", - "Buccal Mucosa", - "Esophageal; Proximal", - "Lacrimal Gland", - "Arm", - "Artery", - "Axilla", - "Lymph Node(s) Iliac-Common", - "Colon", - "Chest", - "Bowel", - "Ascending Colon", - "Islet Cells", - "Ear Canal", - "Lymph Node(s) Pelvic", - "Nerve", - "Parotid Gland", - "Finger", - "Lymph Node(s) Epitrochlear", - "Carotid Body", - "Frontal Cortex", - "Esophageal; Mid", - "White Blood Cells", - "Umbilical Cord", - "Esophagus", - "Retina", - "Adipose", - "Connective Tissue", - "Frontal Lobe", - "Thyroid", - "Transverse Colon", - "Cervical Spine", - "Skeletal Muscle", - "Antrum", - "Central Nervous System", - "Alveolar Ridge", - "Bladder", - "Cerebellum", - "Ilium", - "Effusion", - "Mediastinal Soft Tissue", - "Brain Stem", - "Femur", - "unknown", - "Dermal", - "Gastroesophageal Junction", - "Penis", - "Endocrine Gland", - "Lymph Node(s) Retroperitoneal", - "Hard Palate", - "Mesothelium", - "Stomach", - "Clavicle", - "Mitochondria", - "Tonsil (Pharyngeal)", - "Head - Face Or Neck; Nos", - "" - ] - }, - "Parent Biospecimen Key": {}, - "Biospecimen Site of Resection or Biopsy": { - "enum": [ - "Branchial cleft", - "Exocervix", - "Main bronchus", - "Ovary", - "Rectosigmoid junction", - "Labium majus", - "Pelvic bones; sacrum; coccyx and associated joints", - "Overlapping lesion of larynx", - "Heart", - "Connective; subcutaneous and other soft tissues of thorax", - "Scrotum; NOS", - "External lower lip", - "Acoustic nerve", - "Peritoneum; NOS", - "Orbit; NOS", - "Female genital tract; NOS", - "Lower third of esophagus", - "Posterior mediastinum", - "Upper-inner quadrant of breast", - "Skin of lip; NOS", - "Overlapping lesion of respiratory system and intrathoracic organs", - "Corpus uteri", - "Ciliary body", - "Overlapping lesion of retroperitoneum and peritoneum", - "Duodenum", - "Spinal cord", - "Intestinal tract; NOS", - "Thymus", - "Palate; NOS", - "Biliary tract; NOS", - "Bone; NOS", - "Vertebral column", - "Meckel diverticulum", - "Craniopharyngeal duct", - "Prostate gland", - "Reticuloendothelial system; NOS", - "Larynx; NOS", - "Pelvic lymph nodes", - "Kidney; NOS", - "Aortic body and other paraganglia", - "Endocrine gland; NOS", - "Overlapping lesion of bladder", - "Overlapping lesion of penis", - "Lingual tonsil", - "Peripheral nerves and autonomic nervous system of head; face; and neck", - "Labium minus", - "Connective; subcutaneous and other soft tissues of trunk; NOS", - "Overlapping lesion of ill-defined sites", - "Anal canal", - "Epididymis", - "Overlapping lesion of accessory sinuses", - "Intrathoracic lymph nodes", - "Middle ear", - "Occipital lobe", - "Urachus", - "Overlapping lesion of heart; mediastinum and pleura", - "Peripheral nerves and autonomic nervous system of trunk; NOS", - "Anterior floor of mouth", - "Axillary tail of breast", - "Lower gum", - "Bladder; NOS", - "Other ill-defined sites", - "Overlapping lesion of stomach", - "Overlapping lesion of colon", - "Posterior wall of hypopharynx", - "Vallecula", - "Conjunctiva", - "Hard palate", - "Connective; subcutaneous and other soft tissues of pelvis", - "Trachea", - "Choroid", - "Trigone of bladder", - "Posterior wall of nasopharynx", - "Spinal meninges", - "Paraurethral gland", - "Mucosa of upper lip", - "Splenic flexure of colon", - "Abdomen; NOS", - "Frontal sinus", - "Cervical esophagus", - "Middle third of esophagus", - "Brain; NOS", - "Other specified parts of pancreas", - "Superior wall of nasopharynx", - "Rectum; NOS", - "Nasal cavity", - "Major salivary gland; NOS", - "Maxillary sinus", - "Retromolar area", - "Pylorus", - "Optic nerve", - "Broad ligament", - "Overlapping lesion of endocrine glands and related structures", - "Overlapping lesion of major salivary glands", - "Overlapping lesion of small intestine", - "Overlapping lesion of floor of mouth", - "Anterior mediastinum", - "Round ligament", - "Unknown primary site", - "Ascending colon", - "Jejunum", - "Bone marrow", - "Parathyroid gland", - "Pelvis; NOS", - "Bones of skull and face and associated joints", - "Overlapping lesion of nasopharynx", - "Central portion of breast", - "Mucosa of lower lip", - "Vagina; NOS", - "Skin of other and unspecified parts of face", - "Lymph nodes of multiple regions", - "Myometrium", - "Overlapping lesion of digestive system", - "Temporal lobe", - "Overlapping lesion of brain and central nervous system", - "Appendix", - "Tail of pancreas", - "Overlapping lesion of palate", - "Frontal lobe", - "Soft palate; NOS", - "Commissure of lip", - "Dorsal surface of tongue; NOS", - "Islets of Langerhans", - "Overlapping lesion of cervix uteri", - "Overlapping lesion of connective; subcutaneous and other soft tissues", - "Long bones of lower limb and associated joints", - "Breast; NOS", - "Floor of mouth; NOS", - "Peripheral nerves and autonomic nervous system of thorax", - "Parametrium", - "Anterior surface of epiglottis", - "Brain stem", - "Skin of lower limb and hip", - "Overlapping lesions of oropharynx", - "Pancreatic duct", - "External lip; NOS", - "Overlapping lesion of rectum; anus and anal canal", - "Other specified parts of female genital organs", - "Lymph nodes of axilla or arm", - "Descended testis", - "Pleura; NOS", - "Parotid gland", - "Nasopharynx; NOS", - "Upper respiratory tract; NOS", - "Overlapping lesion of breast", - "Cortex of adrenal gland", - "Overlapping lesion of urinary organs", - "Fundus uteri", - "Lesser curvature of stomach; NOS", - "Lateral wall of oropharynx", - "Posterior wall of bladder", - "Ventral surface of tongue; NOS", - "Cheek mucosa", - "Laryngeal cartilage", - "Submandibular gland", - "Abdominal esophagus", - "unknown", - "Uterus; NOS", - "Meninges; NOS", - "Overlapping lesion of esophagus", - "Hypopharynx; NOS", - "Peripheral nerves and autonomic nervous system of upper limb and shoulder", - "Thorax; NOS", - "Not Reported", - "Descending colon", - "Oropharynx; NOS", - "Vestibule of mouth", - "Upper gum", - "Mucosa of lip; NOS", - "Head; face or neck; NOS", - "Connective; subcutaneous and other soft tissues of abdomen", - "Ampulla of Vater", - "Overlapping lesion of tongue", - "Overlapping lesion of eye and adnexa", - "Tonsillar fossa", - "Ureter", - "Mandible", - "Lower lobe; lung", - "Peripheral nerves and autonomic nervous system of lower limb and hip", - "Overlapping lesion of bones; joints and articular cartilage", - "Tonsillar pillar", - "Upper lobe; lung", - "Adrenal gland; NOS", - "Tongue; NOS", - "Head of pancreas", - "Hepatic flexure of colon", - "Overlapping lesion of lung", - "Other specified parts of male genital organs", - "Skin of trunk", - "Cerebrum", - "Mediastinum; NOS", - "Prepuce", - "Anterior 2/3 of tongue; NOS", - "Vulva; NOS", - "Cardia; NOS", - "Pineal gland", - "Upper third of esophagus", - "Overlapping lesion of female genital organs", - "Lateral floor of mouth", - "Hypopharyngeal aspect of aryepiglottic fold", - "Fundus of stomach", - "Body of pancreas", - "Gastrointestinal tract; NOS", - "Middle lobe; lung", - "Postcricoid region", - "Lateral wall of bladder", - "Overlapping lesion of corpus uteri", - "Upper-outer quadrant of breast", - "Cloacogenic zone", - "Overlapping lesion of vulva", - "Autonomic nervous system; NOS", - "Body of stomach", - "Endometrium", - "Gastric antrum", - "Uterine adnexa", - "Parietal lobe", - "Cerebellum; NOS", - "Lip; NOS", - "Peripheral nerves and autonomic nervous system of abdomen", - "Overlapping lesion of pancreas", - "Sphenoid sinus", - "Dome of bladder", - "Overlapping lesion of male genital organs", - "External ear", - "External upper lip", - "Cauda equina", - "Anterior wall of bladder", - "Thoracic esophagus", - "Placenta", - "Sublingual gland", - "Connective; subcutaneous and other soft tissues; NOS", - "Ethmoid sinus", - "Lateral wall of nasopharynx", - "Ill-defined sites within respiratory system", - "Ventricle; NOS", - "Undescended testis", - "Small intestine; NOS", - "Bladder neck", - "Retina", - "Pancreas; NOS", - "Short bones of upper limb and associated joints", - "Posterior wall of oropharynx", - "Medulla of adrenal gland", - "Pituitary gland", - "Thyroid gland", - "Cerebral meninges", - "Glans penis", - "Overlapping lesion of peripheral nerves and autonomic nervous system", - "Retroperitoneum", - "Waldeyer ring", - "Lung; NOS", - "Lacrimal gland", - "Lower limb; NOS", - "Endocervix", - "Glottis", - "Skin; NOS", - "Specified parts of peritoneum", - "Short bones of lower limb and associated joints", - "Overlapping lesion of other and unspecified parts of mouth", - "Supraglottis", - "Spleen", - "Pharynx; NOS", - "Male genital organs; NOS", - "Stomach; NOS", - "Liver", - "Cervix uteri", - "Overlapping lesion of brain", - "Fallopian tube", - "Lymph node; NOS", - "Connective; subcutaneous and other soft tissues of upper limb and shoulder", - "Urethra", - "Connective; subcutaneous and other soft tissues of head; face; and neck", - "Cecum", - "Greater curvature of stomach; NOS", - "Isthmus uteri", - "Cranial nerve; NOS", - "Penis; NOS", - "Gum; NOS", - "Border of tongue", - "Mouth; NOS", - "Olfactory nerve", - "Overlapping lesion of biliary tract", - "Body of penis", - "Upper limb; NOS", - "Colon; NOS", - "Overlapping lesion of bones; joints and articular cartilage of limbs", - "Blood", - "Sigmoid colon", - "Gallbladder", - "Transverse colon", - "Extrahepatic bile duct", - "Urinary system; NOS", - "Overlapping lesion of hypopharynx", - "Uvula", - "Nipple", - "Overlapping lesion of lip; oral cavity and pharynx", - "Renal pelvis", - "Intra-abdominal lymph nodes", - "Anterior wall of nasopharynx", - "Hematopoietic system; NOS", - "Tonsil; NOS", - "Bone of limb; NOS", - "Lower-inner quadrant of breast", - "Connective; subcutaneous and other soft tissues of lower limb and hip", - "Eyelid", - "Pyriform sinus", - "Ureteric orifice", - "Subglottis", - "Long bones of upper limb; scapula and associated joints", - "Spermatic cord", - "Skin of upper limb and shoulder", - "Lower-outer quadrant of breast", - "Accessory sinus; NOS", - "Ileum", - "Clitoris", - "Eye; NOS", - "Lymph nodes of inguinal region or leg", - "Peripheral nerves and autonomic nervous system of pelvis", - "Anus; NOS", - "Esophagus; NOS", - "Nervous system; NOS", - "Cornea; NOS", - "Overlapping lesion of skin", - "Intrahepatic bile duct", - "Testis; NOS", - "Base of tongue; NOS", - "Carotid body", - "Rib; sternum; clavicle and associated joints", - "Overlapping lesion of lip", - "Skin of scalp and neck", - "Lymph nodes of head; face and neck", - "Overlapping lesion of tonsil", - "" - ] - }, - "Biospecimen Type": { - "enum": [ - "Benign Neoplasms", - "Blood Derived Liquid Biopsy", - "Bone Marrow Normal", - "Fibroblasts from Bone Marrow Normal", - "Recurrent Blood Derived Cancer - Bone Marrow", - "Primary Blood Derived Cancer - Bone Marrow", - "Metastatic", - "Solid Tissue Normal", - "Control Analyte", - "Neoplasms of Uncertain and Unknown Behavior", - "Human Tumor Original Cells", - "Blood Buffy Coat", - "Primary Blood Derived Cancer - Peripheral Blood", - "Slides", - "Total RNA", - "Not Reported", - "GenomePlex (Rubicon) Amplified DNA", - "Whole Blood", - "Not Allowed To Collect", - "FFPE Scrolls", - "Blood Derived Cancer - Peripheral Blood; Post-treatment", - "Next Generation Cancer Model Expanded Under Non-conforming Conditions", - "Repli-G X (Qiagen) DNA", - "Recurrent Blood Derived Cancer - Peripheral Blood", - "Blood Derived Cancer - Bone Marrow; Post-treatment", - "Cell Line Derived Xenograft Tissue", - "EBV Immortalized Normal", - "Saliva", - "Blood Clot", - "RNA", - "Buccal Cell Normal", - "Blood Derived Cancer - Bone Marrow", - "Recurrent Tumor", - "Lymphoid Normal", - "Repli-G (Qiagen) DNA", - "Cell", - "Primary Xenograft Tissue", - "Whole Animal", - "Mixed Adherent Suspension", - "Body Fluid", - "DNA", - "Mononuclear Cells from Bone Marrow Normal", - "Tissue", - "Additional - New Primary", - "Cell Lines", - "Primary Tumor", - "Blood Derived Cancer - Peripheral Blood", - "Expanded Next Generation Cancer Model", - "In Situ Neoplasms", - "Additional Metastatic", - "unknown", - "Blood Derived Normal", - "Post neo-adjuvant therapy", - "Tumor Adjacent Normal - Post Neo-adjuvant Therapy", - "Analyte", - "Next Generation Cancer Model", - "Xenograft Tissue", - "Pleural Effusion", - "Tumor", - "FFPE Recurrent", - "Granulocytes" - ] - }, - "Biospecimen Embedding Medium": { - "enum": [ - "Methacrylate", - "Epoxy Resin (Araldite)", - "other", - "Agar embedding", - "Celloidin media", - "Paraffin wax", - "None", - "unknown", - "Gelatin", - "Carbowax" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Biospecimen Species": { - "type": "array", - "items": { - "enum": [ - "Cow", - "Guinea Pig", - "Asian Elephant", - "unspecified", - "Rabbit", - "Rhesus monkey", - "Mouse", - "Chicken", - "Fruit Fly", - "African Bush Elephant", - "Trichoplax adhaerens", - "Boar", - "Worm", - "Cat", - "Escherichia coli", - "Sheep", - "Multispecies", - "unknown", - "Opossum", - "Rat", - "Human Cell Line", - "Yeast", - "Horse", - "Zebrafish", - "Armadillo", - "Human Patient", - "Human", - "Dog" - ] - }, - "maxItems": 28 - }, - "Biospecimen Fixative": { - "enum": [ - "other", - "PAXgene tissue", - "Dimethylacetamide", - "TCL lysis buffer", - "Acetone", - "95% Ethanol", - "Carnoy's Fixative", - "None", - "Cryo-store", - "Alcohol", - "RNAlater", - "Formalin", - "Para-benzoquinone", - "Polaxamer", - "Saline", - "Glutaraldehyde", - "Methacarn", - "Dimidoester", - "unknown", - "OCT media", - "Carbodiimide", - "NP40 lysis buffer" - ] - }, - "Biospecimen Primary Diagnosis": { - "enum": [ - "Adenocarcinoma; intestinal type", - "Acute myeloid leukemia with t(6;9)(p23;q34); DEK-NUP214", - "Bronchiolo-alveolar adenocarcinoma; NOS", - "Lymphoid leukemia; NOS", - "Squamous cell carcinoma; spindle cell", - "Gliofibroma", - "Acute myeloid leukemia with multilineage dysplasia", - "Mesonephric adenoma", - "Proliferative polycythemia", - "Adenosquamous carcinoma", - "Well differentiated thymic carcinoma", - "Malignant mast cell tumor", - "Neoplasm; metastatic", - "Malignant mucinous adenofibroma", - "Odontoameloblastoma", - "Typical carcinoid", - "DCIS; comedo type", - "B-cell lymphoma; unclassifiable; with features intermediate between diffuse large B-cell lymphoma and Burkitt lymphoma", - "Malignant melanoma in junctional nevus", - "Meningothelial sarcoma", - "Astrocytoma; NOS", - "Hepatoma; benign", - "Encapsulated follicular variant of papillary thyroid carcinoma; NOS (EFVPTC; NOS)", - "Undifferentiated pleomorphic sarcoma", - "Verrucous keratotic hemangioma", - "Mixed phenotype acute leukemia; B/myeloid; NOS", - "Metaplastic carcinoma with osseous differentiation", - "Juvenile myelomonocytic leukemia", - "Papillary ependymoma", - "Blue nevus; malignant", - "Mixed pancreatic endocrine and exocrine tumor; malignant", - "Ductal carcinoma; cribriform type", - "Reticulum cell sarcoma; NOS", - "Ameloblastic fibrodentinosarcoma", - "Juvenile angiofibroma", - "Mixed tumor; salivary gland type; NOS", - "Gastrin cell tumor; malignant", - "Cholangioma", - "Endometrioid adenofibroma; borderline malignancy", - "Infiltrating and papillary adenocarcinoma", - "Juvenile carcinoma of breast", - "Acute myeloid leukemia with prior myelodysplastic syndrome", - "Cavernous hemangioma", - "Infiltrating duct and mucinous carcinoma", - "Acute myeloid leukemia; MLL", - "Low-grade intramedullary osteosarcoma", - "Oncocytic Schneiderian papilloma", - "Theca cell-granulosa cell tumor", - "Intratubular germ cell neoplasia", - "Acute lymphoblastic leukemia; NOS", - "Noninvasive pancreatobiliary papillary neoplasm with high grade dysplasia", - "Subependymal giant cell astrocytoma", - "Renal carcinoma; collecting duct type", - "Follicular adenocarcinoma; trabecular", - "Monoclonal gammopathy; NOS", - "Chordoid glioma", - "Nerve sheath myxoma", - "Acinar adenocarcinoma", - "Esophageal squamous intraepithelial neoplasia (dysplasia); high grade", - "Papillary squamous cell carcinoma in situ", - "Diffuse intraductal papillomatosis", - "Hepatoblastoma; mixed epithelial-mesenchymal", - "Nodular hidradenoma; malignant", - "PTLD; NOS", - "Tumorlet; benign", - "Odontogenic carcinosarcoma", - "Periosteal fibrosarcoma", - "Spindle cell angioendothelioma", - "Mixed cell adenocarcinoma", - "Rhabdomyoma; NOS", - "Mixed liposarcoma", - "Dendritic cell sarcoma; NOS", - "Primary cutaneous anaplastic large cell lymphoma", - "Fibroepithelioma; NOS", - "Splenic diffuse red pulp small B-cell lymphoma", - "Chronic lymphatic leukemia", - "Mast cell leukaemia", - "Metatypical carcinoma", - "Testicular stromal tumor", - "Diktyoma; benign", - "Arrhenoblastoma; NOS", - "Glioblastoma with sarcomatous component", - "Oxyphilic adenocarcinoma", - "Solitary plasmacytoma", - "Papillotubular adenocarcinoma", - "Hodgkin disease; NOS", - "Tenosynovial giant cell tumor", - "Anal intraepithelial neoplasia; grade III", - "Juvenile chronic myelomonocytic leukemia", - "Basal cell tumor", - "Lymphoepithelioma-like carcinoma", - "Mycosis fungoides", - "Papillary pseudomucinous cystadenocarcinoma", - "RAEB", - "Queyrat erythroplasia", - "Mucous carcinoma", - "Intraosseous well differentiated osteosarcoma", - "Papillary carcinoma; diffuse sclerosing", - "Choriocarcinoma combined with other germ cell elements", - "Papilloma; NOS", - "Desmoplastic nodular medulloblastoma", - "Chondrosarcoma grade 2/3", - "Myeloproliferative disease; NOS", - "Myofibroma", - "Embryonal hepatoma", - "Malignant lymphoma; large cell; diffuse; NOS", - "Fibromatosis-like metaplastic carcinoma", - "Medulloepithelioma; benign", - "Encapsulated papillary carcinoma with invasion", - "Mesenteric fibromatosis", - "Intraductal papillary mucinous neoplasm (IPMN) with an associated invasive carcinoma", - "Fibroliposarcoma", - "Plasma cell myeloma", - "Aorticopulmonary paraganglioma", - "Metaplastic carcinoma; NOS", - "Refractory thrombocytopenia", - "Soft tissue perineurioma", - "Polar spongioblastoma", - "Intraductal and lobular carcinoma", - "Cartilaginous exostosis", - "Mucinous cystadenoma; borderline malignancy", - "PP/PYY producing tumor", - "Chronic myelogenous leukemia; t(9;22)(q34;q11)", - "Cystic lymphangioma", - "Phosphaturic mesenchymal tumor; malignant", - "Choroid plexus papilloma; NOS", - "Vulvar intraepithelial neoplasia; grade III", - "Adrenal medullary paraganglioma", - "Granulosa cell tumor; juvenile", - "Cutaneous histiocytoma; NOS", - "Erythroleukemia", - "Acute promyelocytic leukemia; NOS", - "Infiltrating ductular carcinoma", - "Olfactory neurocytoma", - "Granular cell tumor of the sellar region", - "Thecoma; malignant", - "Hypereosinophilic syndrome", - "Dysplastic nevus", - "Lymphoproliferative disease; NOS", - "Pancreatobiliary neoplasm; non-invasive", - "Malignant myelosclerosis", - "Papillary carcinoma in situ", - "Perifollicular fibroma", - "Glomoid sarcoma", - "Dysgerminoma", - "Bronchiolar carcinoma", - "Osteochondroma", - "Trabecular adenocarcinoma", - "Conventional central osteosarcoma", - "Aggressive angiomyxoma", - "Malignant reticulosis; NOS", - "Spitz nevus", - "Basal cell carcinoma; nodular", - "Infiltrating angiolipoma", - "Endometrioid cystadenocarcinoma", - "Mucinous carcinoma", - "Teratoblastoma; malignant", - "Solid and papillary epithelial neoplasm", - "Ductal carcinoma in situ; papillary", - "Pituicytoma", - "Androblastoma; benign", - "Insular carcinoma", - "Intradermal nevus", - "Intraductal papillary neoplasm with low grade intraepithelial neoplasia", - "Small cell carcinoma; NOS", - "Mucosal-associated lymphoid tissue lymphoma", - "Warthin tumor", - "Serous papillary cystic tumor of borderline malignancy", - "Mixed small cell carcinoma", - "Myelodysplastic syndrome; NOS", - "Pilomatrix carcinoma", - "Intraductal carcinoma; noninfiltrating; NOS", - "Plexiform schwannoma", - "Stromal sarcoma; NOS", - "Cellular ependymoma", - "Kaposi sarcoma", - "Mixed adenocarcinoma and epidermoid carcinoma", - "Mesenchymoma; NOS", - "Small cell neuroendocrine carcinoma", - "Capillary hemangioma", - "Syncytial meningioma", - "Acute myeloid leukemia with myelodysplasia-related changes", - "Hodgkin lymphoma; lymphocyte depletion; diffuse fibrosis", - "Tumor cells; uncertain whether benign or malignant", - "Pineal parenchymal tumor of intermediate differentiation", - "Gynandroblastoma", - "Mixed acidophil-basophil carcinoma", - "Serous cystadenofibroma; NOS", - "Intraductal carcinoma; NOS", - "Combined hepatocellular carcinoma and cholangiocarcinoma", - "Tubulocystic renal cell carcinoma", - "Langerhans cell histiocytosis; unifocal", - "Serotonin producing carcinoid", - "Hodgkin lymphoma; mixed cellularity; NOS", - "Bile duct carcinoma", - "Thymoma; predominantly cortical; malignant", - "Endometrioid adenocarcinoma; secretory variant", - "Endometrioid cystadenofibroma; borderline malignancy", - "Papillary adenocarcinoma; follicular variant", - "Noninvasive pancreatobiliary papillary neoplasm with low grade dysplasia", - "Neuroblastoma; NOS", - "Mucinous cystic neoplasm with high-grade intraepithelial neoplasia", - "Serous cystadenocarcinoma; NOS", - "Lymphangiosarcoma", - "Hemangioma simplex", - "Ossifying fibromyxoid tumor; malignant", - "Choriocarcinoma combined with teratorna", - "Adenocarcinoma in situ in adenomatous polyp", - "Squamous cell carcinoma; pseudoglandular", - "Basal cell carcinoma; desmoplastic type", - "Neuroendocrine carcinoma; moderately differentiated", - "Undifferentiated high-grade pleomorphic sarcoma", - "Acinar cell cystadenocarcinoma", - "Acidophil carcinoma", - "Basal cell adenoma", - "Hodgkin disease; nodular sclerosis; lymphocyte predominance", - "Adenocarcinoma in villous adenoma", - "Glucagonoma; NOS", - "Olfactory neuroblastoma", - "Carcinoma in situ; NOS", - "Mullerian adenosarcoma", - "Periosteal chondroma", - "Acinar adenoma", - "Hemangioendothelioma; NOS", - "Bronchiolo-alveolar carcinoma; Clara cell", - "Gonadoblastoma", - "Splenic marginal zone B-cell lymphoma", - "Anaplastic large cell lymphoma; NOS", - "Acute myloid leukemia; 11q23 abnormalities", - "Ependymoma; anaplastic", - "Adenocarcinoma of anal ducts", - "T-cell rich/histiocyte-rich large B-cell lymphoma", - "Renal cell adenocarcinoma", - "Periosteal chondrosarcoma", - "Acute myeloid leukemia with t(8;21)(q22;q22); RUNX1-RUNX1T1", - "Thymoma; type AB; malignant", - "Spindle cell rhabdomyosarcoma", - "Squamous cell carcinoma in situ with questionable stromal invasion", - "Lymphangioendothelioma; NOS", - "Gemistocytoma", - "Kaposiform hemangioendothelioma", - "FAB MO", - "Endometrioid adenoma; NOS", - "Transitional cell papilloma; benign", - "Ameloblastoma; malignant", - "Embryonal tumor with rhabdoid features", - "Pineocytoma", - "Neuroastrocytoma", - "Mucinous cystadenoma; NOS", - "Soft tissue tumor; malignant", - "Acral lentiginous melanoma; malignant", - "Signet ring cell carcinoma", - "Retinocytoma", - "Oligodendroglioma; anaplastic", - "Mesenchymal tumor; malignant", - "Invasive lobular carcinoma; alveolar type", - "Malignant lymphoma; lymphocytic; poorly differentiated; diffuse", - "Micropapillary carcinoma; NOS", - "Non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP)", - "Venous hemangioma", - "Bellini duct carcinoma", - "Mixed phenotype acute leukemia with t(v;11q23); MLL rearranged", - "Chordoid glioma of third ventricle", - "Somatostatinoma; malignant", - "Calcifying nested epithelial stromal tumor", - "Cyst-associated renal cell carcinoma", - "Sertoli-Leydig cell tumor; retiform", - "Rhabdoid sarcoma", - "Clear cell adenofibroma of borderline malignancy", - "Carcinosarcoma; embryonal", - "DCIS; NOS", - "Prolymphocytic leukemia; T-cell type", - "Ameloblastoma; NOS", - "B lymphoblastic leukemia/lymphoma with t(9;22)(q34;q11.2); BCR-ABL1", - "Serous cystadenoma; NOS", - "Source Data Not Available", - "Papillary adenoma; NOS", - "Bowen disease", - "Neurinomatosis", - "Parietal cell carcinoma", - "Pacinian tumor", - "Rhabdoid tumor; NOS", - "Mucinous cystadenocarcinoma; NOS", - "Lepidic predominant adenocarcinoma", - "Epithelioma; NOS", - "Atypical proliferative papillary serous tumor", - "Hemangiopericytoma; benign", - "Spindle cell melanoma; type B", - "Osteogenic sarcoma; NOS", - "Splenic lymphoma with villous lymphocytes", - "Lipoadenoma", - "Rodent ulcer", - "Adenocarcinoma in situ; non-mucinous", - "Lipid cell tumor of ovary", - "Spongioblastoma polare", - "Carcinoid tumor; argentaffin; malignant", - "Chronic leukemia; NOS", - "Large cell neuroendocrine carcinoma", - "Hidradenoma papilliferum", - "Craniopharyngioma; papillary", - "Protoplasmic astrocytoma", - "Pulmonary adenomatosis", - "Melanoma in situ", - "Cystic hygroma", - "Fibrosarcomatous dermatofibrosarcoma protuberans", - "Sessile serrated polyp", - "Epidermoid carcinoma; NOS", - "Ganglioneuroma", - "Ductal carcinoma in situ; NOS", - "Lipoid cell tumor of ovary", - "Thymoma; epithelial; NOS", - "Infiltrating lobular mixed with other types of carcinoma", - "Oncocytic adenoma", - "Malignant lymphoma; lymphocytic; nodular; NOS", - "Thymic large B-cell lymphoma", - "Lactating adenoma", - "Central odontogenic fibroma", - "Verrucous papilloma", - "Myoepithelial adenoma", - "Trabecular adenoma", - "Follicular carcinoma; well differentiated", - "Transitional cell carcinoma; micropapillary", - "B lymphoblastic leukemia/lymphoma with hyperdiploidy", - "Subependymal glioma", - "Atypical hyperplasia/Endometrioid intraepithelial neoplasm", - "Insulinoma; NOS", - "Glioneuroma", - "Angioimmunoblastic T-cell lymphoma", - "Mixed medullary-papillary carcinoma", - "Arrhenoblastoma; malignant", - "Chronic granulocytic leukemia; t(9;22)(q34;q11)", - "Myxolipoma", - "Langerhans cell granulomatosis", - "Hepatosplenic T-cell lymphoma", - "Hepatocellular carcinoma; pleomorphic type", - "Carcinoma showing thymus-like differentiation", - "Scirrhous adenocarcinoma", - "Malignant lymphoma; lymphocytic; poorly differentiated; nodular", - "Glioblastoma", - "Idiopathic thrombocythemia", - "Intraductal papillary adenocarcinoma; NOS", - "Adenocarcinoma in adenomatous polyposis coli", - "Intravascular B-cell lymphoma", - "GANT", - "Nodal marginal zone lymphoma", - "Well differentiated liposarcoma of superficial soft tissue", - "Gelatinous adenocarcinoma", - "Florid osseous dysplasia", - "Phyllodes tumor; malignant", - "Chronic lymphocytic leukemia", - "Myloproliferative neoplasm; unclassifiable", - "Adenocarcinoma; diffuse type", - "Calcifying odontogenic cyst", - "Neuroendocrine tumor; grade 2", - "Chordoma; NOS", - "Papillary hidradenoma", - "Atypical teratoid/rhabdoid tumor", - "Inflammatory adenocarcinoma", - "Perivascular epithelioid cell tumor; malignant", - "BALT lymphoma", - "Embryonal tumor with multilayered rosettes; NOS", - "Endometrioid adenocarcinoma; NOS", - "Medulloblastoma; non-WNT/non-SHH", - "Mesonephroma; malignant", - "Multiple neurofibromatosis", - "Infantile fibrosarcoma", - "Plasmacytoma; extramedullary", - "Struma ovarii; NOS", - "Neuronevus", - "Adenocarcinoma in situ in tubular adenoma", - "Basaloid carcinoma", - "Trichoepithelioma", - "Adenocarcinoma; endocervical type", - "Eccrine spiradenoma", - "Malignant lymphoma; mixed cell type; follicular", - "Urothelial carcinoma in situ", - "Cylindrical cell papilloma", - "Refractory anemia with excess blasts", - "Blue nevus; NOS", - "Schneiderian papilloma; NOS", - "Adenocarcinoma in tubolovillous adenoma", - "Trichilemmocarcinoma", - "Fibroblastic meningioma", - "Prolactinoma", - "Solitary fibrous tumor", - "Eccrine papillary adenoma", - "Carcinoma; intestinal type", - "Clear cell adenoma", - "Thymoma; medullary; malignant", - "Peripheral odontogenic fibroma", - "Serous surface papillary tumor of borderline malignancy", - "Triton tumor; malignant", - "Cortical T ALL", - "Invasive carcinoma; NST", - "Junctional nevus; NOS", - "Chondromatous giant cell tumor", - "Mediterranean lymphoma", - "Invasive encapsulated follicular variant of papillary thyroid carcinoma (invasive EFVPTC)", - "Anaplastic astrocytoma; IDH-mutant", - "Adenocarcinoma in a polyp; NOS", - "Malignant teratoma; intermediate", - "Primary intraosseous carcinoma", - "Jugulotympanic paraganglioma", - "Oligodendroglioma; IDH-mutant and 1p/19q-codeleted", - "Adenocarcinoma; pancreatobiliary type", - "Spindle cell carcinoma; NOS", - "Diffuse midline glioma; H3 K27M-mutant", - "Myxoinflammatory fibroblastic sarcoma (MIFS)", - "Chronic myelocytic leukemia; NOS", - "Fetal adenoma", - "Melanotic progonoma", - "Sex cord tumor; NOS", - "Embryonal carcinoma; polyembryonal type", - "Plasma cell leukemia", - "Langerhans cell histiocytosis; poly-ostotic", - "Pleomorphic leiomyoma", - "Neuroendocrine tumor; grade 1", - "Acute myeloid leukemia without prior myelodysplastic syndrome", - "Papillary carcinoma; NOS", - "Superficial spreading adenocarcinoma", - "Endometrioid carcinoma with squamous differentiation", - "Mixed acinar-endocrine carcinoma", - "Invasive hydatidiform mole", - "Adenocarcinoma combined with other types of carcinoma", - "Endometrioid cystadenoma; borderline malignancy", - "Pneumoblastoma", - "Agnogenic myeloid metaplasia", - "Gastrointestinal stromal sarcoma", - "Papillomatosis; NOS", - "Spongioneuroblastoma", - "Adenomatous polyposis coli", - "Papillary squamous cell carcinoma", - "Pleomorphic xanthoastrocytoma", - "Transitional pineal tumor", - "Angiofibroma; NOS", - "Involuting nevus", - "Malignant lymphoma; lymphocytic; diffuse; NOS", - "SALT lymphoma", - "Clear cell odontogenic carcinoma", - "Perineural MPNST", - "High grade surface osteosarcoma", - "Lymphosarcoma; NOS", - "Xanthofibroma", - "Minimally invasive adenocarcinoma; mucinous", - "Tubular carcinoid", - "Mucinous cystic neoplasm with low-grade dysplasia", - "Glassy cell carcinoma", - "Bronchial-associated lymphoid tissue lymphoma", - "Follicular lymphoma; NOS", - "Solitary fibrous tumor/hemangiopericytoma Grade 1 (CNS)", - "Serrated adenoma", - "Mucoepidermoid carcinoma", - "Choroid plexus papilloma; malignant", - "Mesothelioma; benign", - "Papillary cystic tumor", - "Chloroma", - "Inflammatory carcinoma", - "Hepatocellular carcinoma; fibrolamellar", - "Malignant lymphoma; large B-cell; diffuse; centroblastic; NOS", - "Burkitt-like lymphoma", - "MGUS", - "Follicular lymphoma; small cleaved cell", - "Refractory anemia", - "Undifferentiated sarcoma", - "Diffuse melanocytosis", - "Malignant lymphoma; lymphocytic; well differentiated; nodular", - "Endometrioid carcinoma; NOS", - "Endometrioid adenofibroma; NOS", - "Brenner tumor; proliferating", - "Thymoma; lymphocytic; malignant", - "Squamous cell papilloma; NOS", - "Non-lymphocytic leukemia; NOS", - "Non-invasive low grade serous carcinoma", - "T-cell large granular lymphocytosis", - "Mixed embryonal carcinoma and teratoma", - "Fibrous histiocytoma; NOS", - "Hemangioendothelioma; benign", - "Tubulopapillary adenocarcinoma", - "Mucinous cystic tumor with moderate dysplasia", - "Malignant teratoma; anaplastic", - "c-ALL", - "Splenic marginal zone lymphoma; NOS", - "Nephrogenic adenofibroma", - "Papillary cystadenoma; borderline malignancy", - "Angiomyolipoma", - "Leiomyomatosis; NOS", - "Extranodal NK/T-cell lymphoma; nasal type", - "FAB L3", - "Atypical carcinoid tumor", - "Intratubular malignant germ cells", - "Adenocarcinoma; NOS", - "Plexiform fibrohistiocytic tumor", - "Acinar adenocarcinoma; sarcomatoid", - "Gemistocytic astrocytoma", - "Refractory anemia with ring sideroblasts associated with marked thrombocytosis", - "Carcinoma in situ in a polyp; NOS", - "Acute myelosclerosis; NOS", - "Chondroma; NOS", - "Acute monoblastic and monocytic leukemia", - "Glandular intraepithelial neoplasia; grade I", - "Intraepidermal nevus", - "Medullary adenocarcinoma", - "Infiltrating basal cell carcinoma; NOS", - "Nonpigmented nevus", - "FAB M4", - "Myofibroblastic tumor; NOS", - "Seromucinous carcinoma", - "Retinoblastoma; NOS", - "Thymoma; spindle cell; malignant", - "Fibro-osteoma", - "L-cell tumor", - "Nodular melanoma", - "Chromaffin tumor", - "Mixed carcinoid-adenocarcinoma", - "Scirrhous carcinoma", - "Fibroxanthoma; NOS", - "Digital papillary adenocarcinoma", - "Basal cell carcinoma; fibroepithelial", - "Dermoid; NOS", - "Adenoid basal carcinoma", - "Eosinophilic granuloma", - "Adult cystic teratoma", - "Papillary neoplasm; pancreatobiliary-type; with high grade intraepithelial neoplasia", - "Synovial sarcoma; biphasic", - "Multiple hemorrhagic sarcoma", - "Malignant mastocytoma", - "Diktyoma; malignant", - "Granulosa cell tumor; NOS", - "Papillary adenofibroma", - "Pleomorphic carcinoma", - "Langerhans cell histiocytosis; mono-ostotic", - "Villous adenoma; NOS", - "Lymphangiomyomatosis", - "Intraductal papillary neoplasm with high grade dysplasia", - "Malignant lymphoma; noncleaved cell; follicular; NOS", - "Epithelial tumor; benign", - "Hodgkin lymphoma; nodular sclerosis; grade 2", - "Serous adenofibroma of borderline malignancy", - "Brooke tumor", - "Mastocytoma; NOS", - "Adrenal cortical adenoma; pigmented", - "Malignant lymphoma; noncleaved; NOS", - "Squamous cell carcinoma; small cell; nonkeratinizing", - "Villoglandular adenoma", - "Apocrine adenoma", - "Kupffer cell sarcoma", - "Mixed tumor; malignant; NOS", - "Central neurocytoma", - "Peripheral T-cell lymphoma; large cell", - "Supratentorial PNET", - "Choroid plexus papilloma; anaplastic", - "Transitional papilloma", - "Sialoblastoma", - "Tubular androblastoma; NOS", - "Papillary carcinoma of thyroid", - "Pleomorphic rhabdomyosarcoma; NOS", - "Somatostatin cell tumor; malignant", - "Epidermoid carcinoma in situ; NOS", - "Malignant lymphoma; Hodgkin", - "Squamous odontogenic tumor", - "Neuroma; NOS", - "Flat intraepithelial neoplasia; high grade", - "Acute myelocytic leukemia", - "Epithelial tumor; malignant", - "Clear cell sarcoma; of tendons and aponeuroses", - "Atypical chronic myeloid leukemia; Philadelphia chromosome (Ph1) negative", - "Giant pigmented nevus; NOS", - "Pilocytic astrocytoma", - "Germinoma", - "Carcinoma with apocrine metaplasia", - "Langerhans cell histiocytosis; multifocal", - "Neoplasm; malignant; uncertain whether primary or metastatic", - "Acute myeloid leukemia (megakaryoblastic) with t(1;22)(p13;q13); RBM15-MKL1", - "Carcinoma; undifferentiated; NOS", - "Atypical proliferating clear cell tumor", - "Malignant lymphoma; large cleaved cell; NOS", - "Carcinomatosis", - "Melanotic neuroectodermal tumor", - "Epithelioid cell sarcoma", - "Follicular lymphoma; grade 2", - "Acinar cell adenoma", - "Monoblastic leukemia; NOS", - "Mixed squamous cell and glandular papilloma", - "Subareolar duct papillomatosis", - "Tubular adenocarcinoma", - "Neurofibromatosis; NOS", - "Hidradenoma; NOS", - "Lepidic adenocarcinoma", - "Skin appendage tumor; benign", - "Enteropathy associated T-cell lymphoma", - "Dermoid cyst with malignant transformation", - "Intraductal papillary tumor with high grade intraepithelial neoplasia", - "Fibroblastic osteosarcoma", - "Water-clear cell carcinoma", - "Langerhans cell granulomatosis; unifocal", - "Giant cell and spindle cell carcinoma", - "Stromal endometriosis", - "Fibrous papule of nose", - "Hepatoblastoma", - "Intracanalicular fibroadenoma", - "Intraductal papillary neoplasm with associated invasive carcinoma", - "Mixed medullary-follicular carcinoma", - "Multifocal superficial basal cell carcinoma", - "Paraganglioma; NOS", - "FAB M3 (includes all variants)", - "Nephroma; NOS", - "Myeloid leukemia associated with Down Syndrome", - "Secretory carcinoma of breast", - "Hodgkin lymphoma; lymphocyte-rich", - "Pheochromocytoma; NOS", - "Adult granulosa cell tumor", - "Renomedullary fibroma", - "Hepatoid adenocarcinoma", - "Intraductal carcinoma and lobular carcinoma in situ", - "Squamous cell carcinoma; acantholytic", - "Intraductal papillomatosis; NOS", - "Mammary carcinoma; in situ", - "Follicular carcinoma; trabecular", - "Chronic myelogenous leukemia; BCR-ABL positive", - "T-cell rich large B-cell lymphoma", - "Enterochromaffin cell carcinoid", - "Epithelioma adenoides cysticum", - "Myxosarcoma", - "Secretory meningioma", - "Thymoma; type B2; NOS", - "Islet cell adenocarcinoma", - "Malignant tumor; spindle cell type", - "Acute megakaryoblastic leukaemia", - "Mucinous adenocarcinoma", - "Papillary carcinoma; tall cell", - "Papillary urothelial carcinoma", - "Chorioadenoma destruens", - "Granular cell adenocarcinoma", - "Pindborg tumor", - "Neuroectodermal tumor; NOS", - "Thymoma; NOS", - "Acute granulocytic leukemia", - "Eccrine poroma; malignant", - "Carcinoma simplex", - "Sebaceous adenoma", - "Aggressive NK-cell leukaemia", - "Invasive mammary carcinoma", - "Systemic EBV positive T-cell lymphoproliferative disease of childhood", - "Extra-abdominal desmoid", - "Fibroma; NOS", - "Sex cord-gonadal stromal tumor; NOS", - "Serous cystadenocarcinofibroma", - "Hodgkin granuloma", - "Melanotic MPNST", - "Stromal myosis; NOS", - "Balloon cell nevus", - "Dermatofibrosarcoma; NOS", - "Carcinofibroma", - "Malignant lymphoma; noncleaved; diffuse; NOS", - "Angiokeratoma", - "Langerhans cell histiocytosis; NOS", - "Retroperitoneal fibromatosis", - "Transitional cell papilloma; inverted; NOS", - "Transitional cell carcinoma in situ", - "Epidermoid carcinoma; keratinizing", - "Sarcomatoid mesothelioma", - "Liposarcoma; NOS", - "Malignant lymphoma; lymphoplasmacytoid", - "Hairy cell leukemia", - "Metastasizing leiomyoma", - "Glioblastoma; IDH wildtype", - "Sertoli-Leydig cell tumor of intermediate differentiation", - "Solitary mastocytoma of skin", - "Endometrial stromal sarcoma; NOS", - "Intracystic papillary neoplasm with intermediate grade intraepithelial neoplasia", - "Peripheral T-cell lymphoma; NOS", - "Choroid plexus carcinoma", - "Angiotropic lymphoma", - "Myeloproliferative neoplasm; NOS", - "Ecchondrosis", - "Extraventricular neurocytoma", - "Ceruminous carcinoma", - "Fibrillary astrocytoma", - "Primitive polar spongioblastoma", - "Teratoid medulloepithelioma; benign", - "Juvenile nevus", - "Aleukemic granulocytic leukemia", - "Blastic NK cell lymphoma", - "Chronic granulocytic leukemia; Philadelphia chromosome (Ph1) positive", - "Skin appendage adenoma", - "Hepatoblastoma; epithelioid", - "Adult T-cell lymphoma", - "Sweat gland tumor; NOS", - "Pancreatic endocrine tumor; benign", - "Acute leukemia; NOS", - "Stromal tumor with minor sex cord elements", - "Serrated adenocarcinoma", - "Grawitz tumor", - "Villous adenocarcinoma", - "Ganglioglioma; NOS", - "Acute myeloid leukemia; PML/RAR-alpha", - "Subacute myelogenous leukemia", - "Nonchromaffin paraganglioma; malignant", - "Olfactory neuroepithelioma", - "Carcinoid tumor; argentaffin; NOS", - "Intracystic papillary adenocarcinoma", - "Combined/mixed carcinoid and adenocarcinoma", - "Gastrointestinal autonomic nerve tumor", - "Intraductal papillary carcinoma", - "Mixed adenomatous and hyperplastic polyp", - "Angioma; NOS", - "Infiltrating lobular carcinoma; NOS", - "Myxopapillary ependymoma", - "Precursor T-cell lymphoblastic lymphoma", - "Pseudomucinous adenocarcinoma", - "Papillary adenocarcinoma; NOS", - "Precursor B-cell lymphoblastic lymphoma", - "Odontogenic tumor; NOS", - "Dermoid cyst; NOS", - "Malignant lymphoma; non-Hodgkin; NOS", - "Stromal tumor; benign", - "Follicular adenocarcinoma; NOS", - "Cemento-ossifying fibroma", - "Mucinous cystadenofibroma; NOS", - "Mucocarcinoid tumor", - "Angioimmunoblastic lymphadenopathy", - "Malignant midline reticulosis", - "Dabska tumor", - "Gastrin cell tumor", - "Odontogenic tumor; malignant", - "Desmoplastic infantile ganglioglioma", - "Basophil carcinoma", - "Thymoma; type A; NOS", - "Hemangioendothelial sarcoma", - "Soft tissue sarcoma", - "Invasive lobular carcinoma; tubulolobular variant", - "Periapical cemento-osseous dysplasia", - "Hemangiopericytoma; NOS", - "Infiltrating basal cell carcinoma; non-sclerosing", - "Gliomatosis cerebri", - "Mucinous cystic neoplasm with intermediate-grade dysplasia", - "Collecting duct carcinoma", - "Cellular angiofibroma", - "Cribriform comedo-type carcinoma", - "Myofibroblastoma", - "Myelomatosis", - "Subependymoma", - "Eccrine dermal cylindroma", - "Chromophobe adenoma", - "Malignant melanoma in giant pigmented nevus", - "Infiltrating duct adenocarcinoma", - "Alpha heavy chain disease", - "Follicular adenocarcinoma; well differentiated", - "Subacute lymphoid leukemia", - "Angiolipoma; NOS", - "Sclerosing liposarcoma", - "Atypical fibroxanthoma", - "Paraganglioma; benign", - "Colloid carcinoma", - "Meningioma; anaplastic", - "Midline carcinoma of children and young adults with NUT rearrangement", - "Strumal carcinoid", - "Acute myeloid leukemia; M6 type", - "Papillary transitional cell carcinoma", - "Meningeal melanocytoma", - "Clear cell adenocarcinoma; mesonephroid", - "Phyllodes tumor; benign", - "Von Recklinghausen disease", - "Ductal carcinoma in situ; solid type", - "Papillary pseudomucinous cystadenoma; NOS", - "Transient abnormal myelopoiesis", - "Neurilemosarcoma", - "Carcinoma with chondroid differentiation", - "Myeloid leukemia; NOS", - "Thymoma; cortical; malignant", - "Biphenotypic sinonasal sarcoma", - "Glycogen-rich carcinoma", - "Spindle cell nevus; NOS", - "Myelolipoma", - "Cervical intraepithelial neoplasia; grade III", - "Sarcomatoid carcinoma", - "Esophageal intraepithelial neoplasia; high grade", - "Ependymoblastoma", - "Cystic tumor of atrio-ventricular node", - "Hodgkin sarcoma", - "Fetal lipomatosis", - "Liposarcoma; differentiated", - "Acute bilineal leukemia", - "Intraductal papillary adenocarcinoma with invasion", - "Round cell carcinoma", - "Endometrioid adenofibroma; malignant", - "SETTLE", - "Thymoma; atypical; NOS", - "Follicular carcinoma; NOS", - "Epithelioid malignant peripheral nerve sheath tumor", - "Acute myeloid leukemia; NOS", - "Colloid adenoma", - "Heavy chain disease; NOS", - "Juvenile melanoma", - "Intraductal tubulopapillary neoplasm", - "Urothelial carcinoma; NOS", - "Neoplasm; benign", - "Adenoid cystic carcinoma", - "Endovascular papillary angioendothelioma", - "High-grade serous carcinoma", - "Adnexal carcinoma", - "Proliferative dermal lesion in congenital nevus", - "Infiltrating lobular carcinoma and ductal carcinoma in situ", - "Sertoli-Leydig cell tumor; poorly differentiated; with heterologous elements", - "Pigmented dermatofibrosarcoma protuberans", - "Myxoid liposarcoma", - "Clear cell sarcoma; NOS", - "Spongioblastoma multiforme", - "Large cell medulloblastoma", - "Malignant mastocytosis", - "Malignant lymphoma; lymphoplasmacytic", - "Serous cystadenofibroma of borderline malignancy", - "Bronchio-alveolar carcinoma; mixed mucinous and non-mucinous", - "Non-small cell carcinoma", - "Well differentiated papillary mesothelioma; benign", - "Thymoma; epithelial; malignant", - "Intracystic papilloma", - "Rathke pouch tumor", - "Polyvesicular vitelline tumor", - "Glandular papilloma", - "Adenomatoid odontogenic tumor", - "Angioblastic meningioma", - "Sertoli cell adenoma", - "Nonchromaffin paraganglioma; NOS", - "Islet cell carcinoma", - "Lipoma; NOS", - "Mucoid adenocarcinoma", - "Adenocarcinoma with squamous metaplasia", - "Therapy-related acute myeloid leukemia; alkylating agent related", - "Adenocarcinoma in situ; NOS", - "Bronchiolo-alveolar carcinoma; non-mucinous", - "Proliferating trichilemmal cyst", - "Intraductal papillary mucinous neoplasm with an associated invasive carcinoma", - "Atypical chronic myeloid leukemia; BCR/ABL negative", - "Metaplastic carcinoma with chondroid differentiation", - "Pleuropulmonary blastoma", - "Carotid body paraganglioma", - "Familial polyposis coli", - "Hydroa vacciniforme-like lymphoma", - "Clear cell meningioma", - "Pleomorphic lobular carcinoma", - "Myoepithelial carcinoma", - "Sertoli cell carcinoma", - "Primary effusion lymphoma", - "Ectomesenchymoma", - "Hodgkin lymphoma; lymphocyte depletion; reticular", - "Lobular carcinoma in situ; NOS", - "Follicular lymphoma; grade 3", - "Malignant lymphoma; mixed lymphocytic-histiocytic; diffuse", - "Intraepithelial squamous cell carcinoma", - "Testicular adenoma", - "Angiomyofibroblastoma", - "Bronchiolo-alveolar carcinoma; Clara cell and goblet cell type", - "Serous carcinoma; NOS", - "Refractory anemia without sideroblasts", - "Turban tumor", - "Undifferentiated spindle cell sarcoma", - "Basal cell carcinoma; morpheic", - "Serous endometrial intraepithelial carcinoma", - "Synovial sarcoma; monophasic fibrous", - "Adrenal rest tumor", - "Microcystic urothelial carcinoma", - "B-ALL", - "Aleukemic lymphatic leukemia", - "Enteroglucagonoma; NOS", - "PIN III", - "Hereditary leiomyomatosis & RCC-associated renal cell carcinoma", - "Urticaria pigmentosa", - "Sweat gland carcinoma", - "Hodgkin paragranuloma; NOS", - "Islet cell tumor; NOS", - "Follicular carcinoma; oxyphilic cell", - "Mast cell tumor; NOS", - "Gamma heavy chain disease", - "Meningioma; NOS", - "Seminoma with high mitotic index", - "Sinonasal papilloma; fungiform", - "Endometrial stromal sarcoma; low grade", - "Infiltrating duct and colloid carcinoma", - "Halo nevus", - "Invasive lobular carcinoma; solid type", - "Follicular carcinoma; moderately differentiated", - "Oat cell carcinoma", - "Adrenal cortical adenoma; compact cell", - "Acute lymphoblastic leukemia; mature B-cell type", - "Gangliocytic paraganglioma", - "Aggressive systemic mastocytosis", - "Histiocytoid hemangioma", - "Diffuse large B-cell lymphoma associated with chronic inflammation", - "Hepatocellular carcinoma; clear cell type", - "Craniopharyngioma; adamantinomatous", - "Acute myelomonocytic leukemia", - "Pituitary adenoma; NOS", - "Medulloblastoma with extensive nodularity", - "Epithelioid MPNST", - "Osteochondromatosis; NOS", - "Myeloid and lymphoid neoplasms with PDGFRA rearrangement", - "CPNET", - "Osteoid osteoma; NOS", - "Systemic light chain disease", - "Solid pseudopapillary tumor", - "Hydatidiform mole; NOS", - "Acinic cell adenoma", - "Lymphangioma; NOS", - "Plasmacytic leukemia", - "Primary cutaneous gamma-delta T-cell lymphoma", - "Intramuscular lipoma", - "Lymphoepithelial carcinoma", - "Steroid cell tumor; NOS", - "Small cell sarcoma", - "Therapy-related myelodysplastic syndrome; epipodophyllotoxin-related", - "Intraductal papillary-mucinous neoplasm with low grade dysplasia", - "Abdominal fibromatosis", - "Neurinoma", - "Solitary fibrous tumor; malignant", - "Paraganglioma; malignant", - "Cystadenocarcinoma; NOS", - "EBV positive diffuse large B-cell lymphoma of the elderly", - "Intraductal papillary-mucinous adenoma", - "Prostatic intraepithelial neoplasia; grade III", - "Clear cell hidradenoma", - "Epidermoid carcinoma; spindle cell", - "Cribriform carcinoma; NOS", - "Spindle cell lipoma", - "Adenocarcinoma in situ in a polyp; NOS", - "Pre-pre-B ALL", - "Prolymphocytic leukemia; B-cell type", - "Endometrioid tumor of low malignant potential", - "Perineurioma; NOS", - "Granulosa cell tumor; adult type", - "Thymoma; type B2; malignant", - "Follicular adenoma; oxyphilic cell", - "Atypical choroid plexus papilloma", - "Central primitive neuroectodermal tumor; NOS", - "Gastrointestinal pacemaker cell tumor", - "Acute myeloid leukemia with abnormal marrow eosinophils (includes all variants)", - "Intraductal papilloma with ductal carcinoma in situ", - "Adenolymphoma", - "Eosinophil adenocarcinoma", - "Juvenile histiocytoma", - "Fibrofolliculoma", - "Solitary myeloma", - "Benign fibrous histiocytoma", - "Glioma; malignant", - "Non-invasive mammary carcinoma", - "Congenital generalized fibromatosis", - "Lennert lymphoma", - "Acidophil adenocarcinoma", - "Chondroid syringoma", - "Glomus jugulare tumor; NOS", - "Dedifferentiated chondrosarcoma", - "Hodgkin disease; nodular sclerosis; lymphocyte depletion", - "Malignant lymphoma; nodular; NOS", - "Parafollicular cell carcinoma", - "Small cell carcinoma; intermediate cell", - "Ceruminous adenoma", - "Squamous papilloma", - "Bednar tumor", - "Bile duct cystadenoma", - "Carcinoid tumor; NOS; of appendix", - "Mixed meningioma", - "Multiple adenomatous polyps", - "Schneiderian carcinoma", - "Hemangioma; NOS", - "Immature teratoma; NOS", - "Myelodysplastic syndrome; unclassifiable", - "Meningioma; malignant", - "Non-invasive FTP", - "Mucinous carcinoid", - "Precursor cell lymphoblastic leukemia; NOS", - "Spindled mesothelioma", - "Acute myelofibrosis", - "Urachal carcinoma", - "Biliary intraepithelial neoplasia; grade 3", - "Malignant melanoma in Hutchinson melanotic freckle", - "Endometrial sarcoma; NOS", - "Fetal rhabdomyoma", - "Germ cell tumors with associated hematological malignancy", - "Myxoid leiomyosarcoma", - "Sessile serrated adenoma", - "Clear cell tumor; NOS", - "Gonadal stromal tumor; NOS", - "Desmoplastic fibroma", - "Megakaryocytic myelosclerosis", - "Urothelial carcinoma with divergent differentiation", - "Desmoid; NOS", - "Cribriform carcinoma in situ", - "Immunoproliferative small intestinal disease", - "Immunoglobulin deposition disease", - "Neurofibroma; NOS", - "Ossifying fibroma", - "Pick tubular adenoma", - "Chondromyxoid fibroma", - "Acute myeloid leukemia; AML1(CBF-alpha)/ETO", - "Mixed islet cell and exocrine adenocarcinoma", - "Invasive mucinous adenocarcinoma", - "Neoplasm; NOS", - "Haemangiosarcoma", - "Gelatinous carcinoma", - "Congenital peribronchial myofibroblastic tumor", - "Neuroendocrine carcinoma; low grade", - "Wolffian duct carcinoma", - "Astrocytic glioma", - "Intracystic papillary tumor with high grade dysplasia", - "Ductal carcinoma; NOS", - "Phyllodes tumor; borderline", - "Pleomorphic rhabdomyosarcoma; adult type", - "Chronic myeloproliferative disorder", - "Fibrous mesothelioma; NOS", - "Splenic B-cell lymphoma/leukemia; unclassifiable", - "Infiltrating duct mixed with other types of carcinoma", - "Mesoblastic nephroma", - "Adrenal cortical adenocarcinoma", - "Duct carcinoma; NOS", - "Intramuscular hemangioma", - "Mantle zone lymphoma", - "Squamous intraepithelial neoplasia; grade III", - "Diffuse leptomeningeal glioneuronal tumor", - "Pheochromocytoma; malignant", - "Mesenchymoma; malignant", - "Glomangioma", - "Squamous cell carcinoma; NOS", - "Bile duct adenoma", - "Endometrial stromal nodule", - "Endometrial stromatosis", - "LCIS; NOS", - "Malignant lymphoma; follicular; NOS", - "Pleomorphic lipoma", - "Ameloblastic fibro-odontosarcoma", - "PNET; NOS", - "Clear cell cystadenofibroma of borderline malignancy", - "Malignant peripheral nerve sheath tumor", - "Periductal stromal tumor; low grade", - "Aggressive osteoblastoma", - "Acute myeloid leukemia with mutated CEBPA", - "Ceruminous adenocarcinoma", - "Adenocarcinoma of anal glands", - "Cystic partially differentiated nephroblastoma", - "Desmoplastic melanoma; malignant", - "Thymoma; lymphocytic; NOS", - "Franklin disease", - "Aleukemic lymphoid leukemia", - "Glycogenic rhabdomyoma", - "Adenoma; NOS", - "Luteoma; NOS", - "Pleomorphic liposarcoma", - "Pseudomucinous cystadenoma; borderline malignancy", - "Salivary duct carcinoma", - "Mucin-producing adenocarcinoma", - "Symplastic leiomyoma", - "Bronchiolo-alveolar carcinoma; NOS", - "DIN 3", - "Esthesioneuroepithelioma", - "Lymphosarcoma; diffuse", - "Hidrocystoma", - "Hygroma; NOS", - "FAB M6", - "Fetal adenocarcinoma", - "Thymic carcinoma; NOS", - "Regressing nevus", - "Paget disease; extramammary", - "Leukemic reticuloendotheliosis", - "Chondromatosis; NOS", - "Malignant cystic nephroma", - "Mixed basal-squamous cell carcinoma", - "Malignant lymphoma; centrocytic", - "Seminoma; anaplastic", - "Lymphoplasmacyte-rich meningioma", - "Mucinous adenocarcinofibroma", - "Mucinous carcinoma; intestinal type", - "RAEB-T", - "Teratocarcinoma", - "Spiradenoma; NOS", - "Argentaffinoma; malignant", - "Carcinoma; diffuse type", - "Intraductal papillary tumor with high grade dysplasia", - "Myxoma; NOS", - "ACTH-producing tumor", - "Thymoma; organoid; NOS", - "Adrenal cortical adenoma; clear cell", - "Serous tumor; NOS; of low malignant potential", - "Granular cell tumor; malignant", - "Mesothelial papilloma", - "Hurthle cell carcinoma", - "Thymoma; lymphocyte-rich; NOS", - "Small cell carcinoma; fusiform cell", - "Mucin-secreting carcinoma", - "Malignant lymphoma; centroblastic; diffuse", - "Water-clear cell adenocarcinoma", - "Epithelioid mesothelioma; benign", - "Immature teratoma; malignant", - "Hepatocellular carcinoma; scirrhous", - "Cystadenoma; NOS", - "Angiocentric immunoproliferative lesion", - "Giant cell sarcoma of bone", - "Polygonal cell carcinoma", - "Adamantinoma of long bones", - "FAB M2; NOS", - "Myoepithelioma", - "Periosteal osteosarcoma", - "Extra-adrenal paraganglioma; NOS", - "Squamous carcinoma", - "Cystic hypersecretory carcinoma", - "Terminal duct adenocarcinoma", - "Adult T-cell leukemia/lymphoma (HTLV-1 positive) (includes all variants)", - "Adenocarcinoma with spindle cell metaplasia", - "Sex cord-gonadal stromal tumor; incompletely differentiated", - "Refractory anemia with excess blasts in transformation", - "Esophageal squamous intraepithelial neoplasia (dysplasia); low grade", - "Nonlipid reticuloendotheliosis", - "Infiltrating duct and lobular carcinoma", - "Dermatofibroma lenticulare", - "Luteinoma", - "Mucinous cystic neoplasm with high-grade dysplasia", - "Odontogenic ghost cell tumor", - "Myelogenous leukemia; NOS", - "Cholangiocarcinoma", - "Papillary mucinous cystadenocarcinoma", - "Intracystic papillary adenoma", - "CIN III with severe dysplasia", - "Lymphoma; NOS", - "Mu heavy chain disease", - "Infantile myofibromatosis", - "Embryonal rhabdomyosarcoma; NOS", - "Gastrinoma; NOS", - "Chromophobe carcinoma", - "Water-clear cell adenoma", - "Rhabdomyosarcoma; NOS", - "Verrucous epidermoid carcinoma", - "Lymphomatoid granulomatosis", - "Papillary serous cystadenocarcinoma", - "Fetal fat cell lipoma", - "Primary cutaneous CD30+ large T-cell lymphoma", - "Lipoma-like liposarcoma", - "Intraductal carcinoma; solid type", - "Neurocytoma", - "Squamous cell carcinoma; metastatic; NOS", - "Malignant lymphoma; lymphocytic; well differentiated; diffuse", - "Alveolar cell carcinoma", - "Malignant lymphoma; small cleaved cell; follicular", - "Intraosseous low grade osteosarcoma", - "DCIS; papillary", - "Hypernephroid tumor", - "Carcinoid; NOS", - "Acute biphenotypic leukemia", - "Solid carcinoma; NOS", - "Meningeal melanomatosis", - "Tumor embolus", - "Pseudomyxoma peritonei", - "Primary cutaneous CD4-positive small/medium T-cell lymphoma", - "Sinonasal papilloma; exophytic", - "Parachordoma", - "Malignant lymphoma; large cell; cleaved; diffuse", - "Peripheral T-cell lymphoma; pleomorphic small cell", - "Carcinoma with productive fibrosis", - "Peripheral T-cell lymphoma; pleomorphic medium and large cell", - "Atypical adenoma", - "Granulosa cell-theca cell tumor", - "Cavernous lymphangioma", - "Endometrioid adenoma; borderline malignancy", - "Gastrinoma; malignant", - "Synovioma; benign", - "Lymphoproliferative disorder; NOS", - "Racemose hemangioma", - "Unclassified tumor; benign", - "Bronchial adenoma; carcinoid", - "Subacute lymphatic leukemia", - "Gastrointestinal stromal tumor; malignant", - "Plasmacytic lymphoma", - "Granulosa cell tumor; sarcomatoid", - "Malignant lymphoma; histiocytic; NOS", - "Central osteosarcoma", - "ECL cell carcinoid; malignant", - "Interdigitating cell sarcoma", - "Flat adenoma", - "Noninfiltrating intraductal papillary adenocarcinoma", - "Oligodendroglioma; NOS", - "Immunoblastic sarcoma", - "Odontogenic sarcoma", - "Low-grade central osteosarcoma", - "Malignant mucinous cystadenofibroma", - "Acute myeloid leukemia; t(16;16)(p 13;q 11)", - "Adenomyoepithelioma", - "B-cell lymphocytic leukemia/small lymphocytic lymphoma", - "Adrenal medullary paraganglioma; malignant", - "Aggressive digital papillary adenoma", - "Pleomorphic lobular carcinoma in situ", - "Complete hydatidiform mole", - "Endotheliomatous meningioma", - "Esthesioneuroblastoma", - "Spindle epithelial tumor with thymus-like differentiation", - "Central neuroblastoma", - "Chorionepithelioma", - "Histiocytic sarcoma", - "Unclassified tumor; malignant", - "Hodgkin lymphoma; lymphocyte depletion; NOS", - "M6B", - "Neoplasm; uncertain whether benign or malignant", - "Marginal zone lymphoma; NOS", - "Oncocytic carcinoma", - "Histiocytoma; NOS", - "Juvenile fibroadenoma", - "Mixed tumor; salivary gland type; malignant", - "Fibroid uterus", - "Lipoblastomatosis", - "Thymoma; type B1; NOS", - "Duct cell carcinoma", - "Hemolymphangioma", - "Hepatosplenic gamma-delta cell lymphoma", - "Papillary mucinous cystadenoma; NOS", - "Anal intraepithelial neoplasia; low grade", - "Krukenberg tumor", - "Carcinoma with other types mesenchymal differentiation", - "Acutemyeloidleukemia;t(15", - "Sex cord tumor with annular tubules", - "Alpha cell tumor; NOS", - "Skin appendage carcinoma", - "Enteroglucagonoma; malignant", - "Malignant lymphoma; centroblasticcentrocytic; follicular", - "Granular cell myoblastoma; malignant", - "Malignant lymphoma; undifferentiated cell; non-Burkitt", - "Solid carcinoma with mucin formation", - "Sertoli cell tumor; NOS", - "Adenocarcinoma in tubular adenoma", - "Gastrointestinal stromal tumor; NOS", - "Mixed acinar-ductal carcinoma", - "Malignant peripheral nerve sheath tumor with rhabdomyoblastic differentiation", - "Thymoma; type B3; NOS", - "Burkitt tumor", - "Angiomyoma", - "Islet cell tumor; benign", - "Malignant teratoma; trophoblastic", - "Papillary serous cystadenoma; NOS", - "Essential thrombocythemia", - "Multiple myeloma", - "Papillary meningioma", - "Dentinoma", - "Chemodectoma", - "Meningeal sarcomatosis", - "Recklinghausen disease", - "Clear cell adenocarcinoma; NOS", - "Lipid-rich urothelial carcinoma", - "Granular cell carcinoma", - "Adrenal cortical adenoma; mixed cell", - "Embryonal teratoma", - "Basosquamous carcinoma", - "Parosteal osteosarcoma", - "Malignant eccrine spiradenoma", - "Malignant lymphoma; large cell; cleaved; NOS", - "Alveolar carcinoma", - "Granulosa cell carcinoma", - "Diffuse astrocytoma; low grade", - "Sertoli-Leydig cell tumor; poorly differentiated", - "Preleukemia", - "Fibrous mesothelioma; benign", - "Mucinous cystic tumor of borderline malignancy", - "Neuroendocrine carcinoma; NOS", - "RAEB II", - "Extra-adrenal paraganglioma; malignant", - "Acute monocytic leukemia", - "Odontogenic myxoma", - "Brown fat tumor", - "Ependymoma; NOS", - "Gigantiform cementoma", - "Plasmacytoma of bone", - "Carcinoma in a polyp; NOS", - "Carcinoma with osteoclast-like giant cells", - "Infantile hemangioma", - "Hepatocellular carcinoma; spindle cell variant", - "Pancreatoblastoma", - "Intraepidermal squamous cell carcinoma; Bowen type", - "Thymoma; benign", - "Classical Hodgkin lymphoma; lymphocyte depletion; NOS", - "Enterochromaffin-like cell tumor; malignant", - "Juvenile hemangioma", - "Chorioadenoma", - "Bronchial adenoma; NOS", - "B-cell lymphoma; unclassifiable; with features intermediate between diffuse large B-cell lymphoma and classical Hodgkin lymphoma", - "Hepatoma; NOS", - "Monocytic leukemia; NOS", - "Tubulovillous adenoma; NOS", - "Papillary mucinous cystadenoma; borderline malignancy", - "Malignant lymphoma; mixed lymphocytic-histiocytic; nodular", - "FAB M7", - "Pancreatic endocrine tumor; malignant", - "Villoglandular carcinoma", - "Di Guglielmo disease", - "Ameloblastic odontosarcoma", - "Eosinophil carcinoma", - "Aleukemic lymphocytic leukemia", - "Serous borderline tumor-micropapillary variant", - "Odontogenic tumor; benign", - "Hemangiopericytic meningioma", - "Atypical meningioma", - "Endometrioid cystadenofibroma; malignant", - "Chronic lymphoid leukemia", - "Squamous intraepithelial neoplasia; low grade", - "Intraductal micropapillary carcinoma", - "Carcinoma; metastatic; NOS", - "Angiosarcoma", - "Precancerous melanosis; NOS", - "Serous cystadenoma; borderline malignancy", - "Epithelial ependymoma", - "Acute myeloid leukemia with t(9;11)(p22;q23); MLLT3-MLL", - "Localized fibrous tumor", - "Pigmented basal cell carcinoma", - "Adamantinoma; NOS", - "Carcinoma in adenomatous polyp", - "Serous adenofibroma; NOS", - "Basal cell carcinoma; micronodular", - "Pancreatic endocrine tumor; NOS", - "Sarcoma; NOS", - "Endometrioid cystadenoma; NOS", - "Giant cell angiofibroma", - "Synovioma; NOS", - "Megakaryocytic leukemia", - "Minimally invasive adenocarcinoma; non-mucinous", - "Desmoplastic medulloblastoma", - "Noninvasive pancreatobiliary papillary neoplasm with low grade intraepithelial neoplasia", - "Lymphatic leukemic; NOS", - "Combined small cell-squamous cell carcinoma", - "Acute myelogenous leukemia", - "Acute erythremia", - "Carcinoma; anaplastic; NOS", - "Adenomatosis; NOS", - "Composite carcinoid", - "Hepatocarcinoma", - "RARS", - "Papillary transitional cell carcinoma; non-invasive", - "Pilomyxoid astrocytoma", - "Warty carcinoma", - "Epithelioma; benign", - "Follicular adenocarcinoma; moderately differentiated", - "Verrucous carcinoma; NOS", - "Retinoblastoma; undifferentiated", - "Hemangioendothelioma; malignant", - "Clear cell cystadenofibroma", - "Giant cell carcinoma", - "Acinar carcinoma", - "Mixed embryonal rhabdomyosarcoma and alveolar rhabdomyosarcoma", - "T-gamma lymphoproliferative disease", - "Ganglioneuroblastoma", - "Ductal papilloma", - "Squamous papillomatosis", - "Follicular fibroma", - "Giant fibroadenoma", - "Cin III; NOS", - "Hepatoma; malignant", - "Amelanotic melanoma", - "Peripheral neuroectodermal tumor", - "Choriocarcinoma combined with embryonal carcinoma", - "Acute mixed lineage leukemia", - "Schwannoma; NOS", - "Intracystic papillary tumor with high grade intraepithelial neoplasia", - "Acute myeloid leukemia; CBF-beta/MYH11", - "B lymphoblastic leukemia/lymphoma with t(12;21)(p13;q22); TEL-AML1 (ETV6-RUNX1)", - "Hyalinizing trabecular adenoma", - "Malignant lymphoma; lymphocytic; intermediate differentiation; diffuse", - "Chromaffin paraganglioma", - "Mixed ductal-endocrine carcinoma", - "Tubulolobular carcinoma", - "Infiltrating duct and tubular carcinoma", - "T/NK-cell lymphoma", - "RAEB I", - "Classical Hodgkin lymphoma; mixed cellularity; NOS", - "Malignant lymphoma; centroblasticcentrocytic; diffuse", - "Melanoma; malignant; of soft parts", - "Renal cell carcinoma; chromophobe type", - "Fibrous histiocytoma of tendon sheath", - "Monstrocellular sarcoma", - "Mesenchymoma; benign", - "Solitary fibrous tumor/hemangiopericytoma Grade 3 (CNS)", - "Hepatocellular adenoma", - "Ancient schwannoma", - "Malignant teratoma; undifferentiated", - "Subacute monocytic leukemia", - "Blast cell leukemia", - "Malignant lymphoma; large cell; noncleaved; follicular", - "Sertoli-Leydig cell tumor; sarcomatoid", - "Phyllodes tumor; NOS", - "Squamous cell carcinoma with horn formation", - "Therapy-related acute myeloid leukemia; NOS", - "Mucous adenocarcinoma", - "Carcinoma with neuroendocrine differentiation", - "Epidermoid carcinoma in situ with questionable stromal invasion", - "Transitional carcinoma", - "Periapical cemental dysplasia", - "Interstitial cell tumor; malignant", - "Gonocytoma", - "Odontogenic fibroma; NOS", - "Prolymphocytic leukemia; NOS", - "Hodgkin disease; lymphocyte predominance; NOS", - "Refractory neutropenia", - "Chorioepithelioma", - "Mucinous adenocarcinoma; endocervical type", - "Clear cell adenofibroma", - "Ganglioglioma; anaplastic", - "Askin tumor", - "Yolk sac tumor", - "Medullary osteosarcoma", - "Mesothelioma; malignant", - "Classical Hodgkin lymphoma; nodular sclerosis; grade 2", - "Soft tissue tumor; benign", - "Fibrosarcoma; NOS", - "Degenerated schwannoma", - "Malignant rhabdoid tumor", - "Cystoma; NOS", - "Juvenile astrocytoma", - "Eccrine papillary adenocarcinoma", - "Chronic myelomonocytic leukemia in transformation", - "Congenital fibrosarcoma", - "Acute erythroid leukaemia", - "T-zone lymphoma", - "Mucoid cell adenocarcinoma", - "Bronchio-alveolar carcinoma; mucinous", - "Chronic myelomonocytic leukemia; Type II", - "Lymphosarcoma cell leukemia", - "Malignant tumor; clear cell type", - "Acute erythremic myelosis", - "Small cell osteosarcoma", - "Trichodiscoma", - "Thymoma; type A; malignant", - "Fibroepithelial basal cell carcinoma; Pinkus type", - "Papillocystic adenocarcinoma", - "Pheochromoblastoma", - "Clear cell ependymoma", - "Meningiomatosis; NOS", - "Tumor cells; malignant", - "Osteoblastic sarcoma", - "Neuroepithelioma; NOS", - "Mesothelioma; biphasic; malignant", - "Embryonal carcinoma; infantile", - "Fibromyxolipoma", - "FAB M2; AML1(CBF-alpha)/ETO", - "Clear cell carcinoma", - "Follicular lymphoma; grade 3B", - "Trophoblastic tumor; epithelioid", - "Chronic monocytic leukemia", - "Primary amyloidosis", - "Malignant lymphoma; undifferentiated; Burkitt type", - "Adenocarcinoid tumor", - "VIN III", - "Synovioma; malignant", - "Follicular carcinoma; encapsulated", - "Follicular thyroid carcinoma (FTC); encapsulated angioinvasive", - "Mucinous cystadenofibroma of borderline malignancy", - "Islet cell adenoma", - "Chondrosarcoma; NOS", - "Burkitt cell leukemia", - "Mucin-secreting adenocarcinoma", - "Papillary and follicular carcinoma", - "Ameloblastic sarcoma", - "Papillary urothelial neoplasm of low malignant potential", - "Mucinous cystic neoplasm with low-grade intraepithelial neoplasia", - "Adenocarcinoma in multiple adenomatous polyps", - "Bronchiolo-alveolar carcinoma; type II pneumocyte", - "PPNET", - "Sertoli-Leydig cell tumor; intermediate differentiation; with heterologous elements", - "Oncocytoma", - "Microglioma", - "Duct adenocarcinoma; NOS", - "Lymphangioleiomyomatosis", - "Periosteal fibroma", - "Nesidioblastoma", - "Papillary glioneuronal tumor", - "Renomedullary interstitial cell tumor", - "Squamous cell carcinoma; large cell; nonkeratinizing; NOS", - "Thymoma; type AB; NOS", - "Squamous cell carcinoma; large cell; keratinizing", - "Epithelioma; malignant", - "Adenocarcinoma; cribriform comedo-type", - "Columnar cell papilloma", - "Sex cord-gonadal stromal tumor; mixed forms", - "Traditional serrated adenoma", - "Astrocytoma; anaplastic", - "Basophil adenocarcinoma", - "Ependymoma; RELA fusion-positive", - "Bronchiolo-alveolar carcinoma; indeterminate type", - "Sezary disease", - "Carcinoma showing thymus-like element", - "Placental site trophoblastic tumor", - "Myelofibrosis with myeloid metaplasia", - "Thymoma; mixed type; malignant", - "Malignant lymphoma; small cleaved cell; NOS", - "MiT family translocation renal cell carcinoma", - "Monocytoid B-cell lymphoma", - "Argentaffinoma; NOS", - "Follicular carcinoma; minimally invasive", - "Malignant melanoma; regressing", - "Unclassified tumor; malignant; uncertain whether primary or metastatic", - "Diffuse astrocytoma", - "Transitional cell papilloma; inverted; benign", - "Teratoid medulloepithelioma", - "Anaplastic large cell lymphoma; ALK positive", - "Adenoameloblastoma", - "Cementoma; NOS", - "Invasive micropapillary carcinoma", - "Neoplasm; secondary", - "Squamous cell carcinoma; clear cell type", - "Malignant fibrous histiocytoma", - "Adenocarcinoma admixed with neuroendocrine carcinoma", - "Myelofibrosis as a result of myeloproliferative disease", - "Ductal carcinoma in situ; comedo type", - "Wolffian duct adenoma", - "Cerebellar liponeurocytoma", - "Malignant lymphomatous polyposis", - "Combined large cell neuroendocrine carcinoma", - "Papillary squamous cell carcinoma; non-invasive", - "Canalicular adenoma", - "Systemic tissue mast cell disease", - "Angiomatoid fibrous histiocytoma", - "Folliculome lipidique", - "Porocarcinoma", - "Intravascular leiomyomatosis", - "Adenocarcinoma with mixed subtypes", - "Aleukemic myeloid leukemia", - "Follicular adenoma", - "Fibrolipoma", - "Post transplant lymphoproliferative disorder; NOS", - "Mucinous adenofibroma of borderline malignancy", - "Fibromyoma", - "Adenocarcinoma in situ in villous adenoma", - "Carotid body tumor", - "Serous adenocarcinofibroma", - "Granulosa cell tumor; malignant", - "Papillary cystadenoma lymphomatosum", - "Diffuse meningiomatosis", - "Thymoma; cortical; NOS", - "Malignant lymphoma; non-cleaved cell; NOS", - "Serous surface papilloma", - "Leydig cell tumor; benign", - "Alveolar adenoma", - "Acute myeloid leukaemia; t(8;21)(q22;q22)", - "Pancreatic microadenoma", - "Sclerosing rhabdomyosarcoma", - "Epithelioid leiomyoma", - "B lymphoblastic leukemia/lymphoma with t(1;19)(q23;p13.3); E2A-PBX1 (TCF3-PBX1)", - "Chondroblastic osteosarcoma", - "Erythremic myelosis; NOS", - "Duct adenoma; NOS", - "Systemic mastocytosis with associated hematological clonal non-mast cell disorder", - "Craniopharyngioma", - "NUT carcinoma", - "Low grade adenosquamous carcinoma", - "Clear cell cystadenoma", - "Melanocytic nevus", - "Medulloblastoma; SHH-activated and TP53-wildtype", - "Cellular fibroma", - "Glucagonoma; malignant", - "Hepatoid carcinoma", - "Epithelioid cell nevus", - "Juxtaglomerular tumor", - "Primitive neuroectodermal tumor; NOS", - "MANEC", - "Mediastinal (thymic) large B-cell lymphoma", - "Mature teratoma", - "Pinealoma", - "Leydig cell tumor; malignant", - "Langerhans cell histiocytosis; generalized", - "Malignant lymphoma; small lymphocytic; NOS", - "Pancreatic endocrine tumor; nonfunctioning", - "Dermatofibroma; NOS", - "Endocrine adenomatosis", - "Pancreatobiliary-type carcinoma", - "Anaplastic astrocytoma; IDH-wildtype", - "Cystic astrocytoma", - "Bile duct cystadenocarcinoma", - "Large cell calcifying Sertoli cell tumor", - "Skin-associated lymphoid tissue lymphoma", - "CNS Embryonal tumor with rhabdoid features", - "Medullomyoblastoma", - "Calcifying epithelioma of Malherbe", - "Fibrous astrocytoma", - "Apocrine adenocarcinoma", - "Basophil adenoma", - "Renal cell carcinoma; spindle cell", - "Squamous cell papilloma; inverted", - "FAB Ll", - "Extracutaneous mastocytoma", - "Adenomatoid tumor; NOS", - "Adenocarcinoma in polypoid adenoma", - "Carcinoid tumor of uncertain malignant potential", - "Transitional papilloma; inverted; NOS", - "Multiple meningiomas", - "Fibromyxosarcoma", - "Ameloblastic carcinoma", - "Adenocarcinoma in adenomatous polyp", - "Therapy-related myelodysplastic syndrome; NOS", - "Serous microcystic adenoma", - "Fibroepithelioma of Pinkus type", - "Perineurioma; malignant", - "Jadassohn blue nevus", - "Fibrous mesothelioma; malignant", - "Retinoblastoma; diffuse", - "Theca cell tumor", - "GIST; malignant", - "Acute myeloid leukemia; inv(16)(p13;q22)", - "Pulmonary blastoma", - "Osteochondrosarcoma", - "Solid and cystic tumor", - "NK/T-cell lymphoma; nasal and nasal-type", - "Trichilemmoma", - "Osteofibroma", - "Verrucous squamous cell carcinoma", - "Glandular intraepithelial neoplasia; grade III", - "Polymorphic post transplant lymphoproliferative disorder", - "Pineoblastoma", - "Matrical carcinoma", - "Thymoma; medullary; NOS", - "Langerhans cell sarcoma", - "Alpha cell tumor; malignant", - "Atypical polypoid adenomyoma", - "Malignant melanoma in congenital melanocytic nevus", - "Hand-Schuller-Christian disease", - "Wilms tumor", - "Myofibromatosis", - "Basal cell carcinoma; NOS", - "Dermal and epidermal nevus", - "Granular cell myoblastoma; NOS", - "Mesodermal mixed tumor", - "Malignant lymphoma; follicle center; NOS", - "Dedifferentiated liposarcoma", - "Hepatocellular carcinoma; NOS", - "Primary cutaneous CD30+ T-cell lymphoproliferative disorder", - "Haemangioblastoma", - "Clear cell odontogenic tumor", - "Angiomyosarcoma", - "CASTLE", - "Adamantinoma; malignant", - "Neuroendocrine tumor; well differentiated", - "Infiltrating basal cell carcinoma; sclerosing", - "Chief cell adenoma", - "Juxtacortical chondrosarcoma", - "Mesothelioma; NOS", - "Infiltrating duct and cribriform carcinoma", - "Tibial adamantinoma", - "Fascial fibroma", - "Adenocarcinoma in situ in tubulovillous adenoma", - "Myelosclerosis with myeloid metaplasia", - "Common ALL", - "Unclassified tumor; uncertain whether benign or malignant", - "Lobular carcinoma; noninfiltrating", - "Intraductal tubular-papillary neoplasm; high grade", - "Epithelioid sarcoma", - "Intestinal-type adenocarcinoma", - "Primary serous papillary carcinoma of peritoneum", - "Squamous intraepithelial neoplasia; grade II", - "Plexiform hemangioma", - "Ameloblastic fibrosarcoma", - "Cylindrical cell carcinoma", - "Hairy cell leukemia variant", - "Linitis plastica", - "Aleukemic monocytic leukemia", - "Precursor cell lymphoblastic lymphoma; NOS", - "Solid papillary carcinoma with invasion", - "Transitional papilloma; inverted; benign", - "Non-invasive EFVPTC", - "Infiltrating lipoma", - "Transitional meningioma", - "Polycythemia rubra vera", - "Systemic mastocytosis with AHNMD", - "Cutaneous mastocytosis", - "Vipoma; malignant", - "Hutchinson melanotic freckle; NOS", - "Acute myeloid leukemia without maturation", - "Malignant perivascular epithelial cell tumor", - "Urothelial carcinoma with trophoblastic differentiation", - "Gastrointestinal stromal tumor; benign", - "Malignant lymphoma; small cleaved cell; diffuse", - "Codman tumor", - "Fibroameloblastic odontoma", - "Intracystic papillary neoplasm with high grade intraepithelial neoplasia", - "Medulloepithelioma; NOS", - "Ewing tumor", - "Acinar cell tumor", - "Hodgkin disease; lymphocyte predominance; diffuse", - "Metaplastic meningioma", - "Pinkus tumor", - "Cervical intraepithelial neoplasia; low grade", - "Compound odontoma", - "Pilar tumor", - "Intraepithelial carcinoma; NOS", - "Thymoma; type B3; malignant", - "Cylindroma of skin", - "Choriocarcinoma; NOS", - "Diffuse large B-cell lymphoma; NOS", - "Signet ring cell adenocarcinoma", - "Precursor T-cell lymphoblastic leukemia", - "Giant cell glioblastoma", - "Papillary urothelial carcinoma; non-invasive", - "Mixed teratoma and seminoma", - "Pro-B ALL", - "Mixed type rhabdomyosarcoma", - "Leiomyosarcoma; NOS", - "Malignant lymphoma; lymphoblastic; NOS", - "Trabecular carcinoma", - "Spindle cell oncocytoma", - "Subependymal astrocytoma; NOS", - "Plasmablastic lymphoma", - "Pre-T ALL", - "Lymphoepithelioid lymphoma", - "Sclerosing epithelioid fibrosarcoma", - "Intracystic carcinoma; NOS", - "Teratoma; malignant; NOS", - "Chromaffinoma", - "Ameloblastic fibrodentinoma", - "Blastic plasmacytoid dendritic cell neoplasm", - "Papillary serous cystadenoma; borderline malignancy", - "Superficial spreading melanoma", - "Mixed germ cell sex cord-stromal tumor; unclassified", - "Malignant lymphoma; large cell; cleaved and noncleaved", - "Giant cell fibroblastoma", - "Mucinous cystic tumor with low grade dysplasia", - "Fascial fibrosarcoma", - "B lymphoblastic leukemia/lymphoma with hypodiploidy (Hypodiploid ALL)", - "Spermatocytoma", - "Aortic body tumor", - "Hairy cell leukaemia variant", - "Eccrine cystadenoma", - "Eccrine poroma", - "Intracystic papillary tumor with high grade entraepithelial neoplasia", - "Complex odontoma", - "Mixed subependymoma-ependymoma", - "Medullary carcinoma with lymphoid stroma", - "Cellular leiomyoma", - "Superficial well differentiated liposarcoma", - "Thecoma; NOS", - "Extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue", - "Ganglioneuromatosis", - "Vipoma; NOS", - "Malignant lymphoma; lymphocytic; NOS", - "Malignant lymphoma; large cleaved cell; follicular", - "Diffuse cutaneous mastocytosis", - "Proliferating trichilemmal tumor", - "Nevus; NOS", - "Embryonal rhabdomyosarcoma; pleomorphic", - "Tumor cells; NOS", - "Mucinous tumor; NOS; of low malignant potential", - "True histiocytic lymphoma", - "Lipid-rich Sertoli cell tumor", - "Osteosarcoma in Paget disease of bone", - "Bile duct adenocarcinoma", - "Giant cell tumor of soft parts; NOS", - "Intraepidermal epithelioma of Jadassohn", - "Spindle cell sarcoma", - "Glomus tumor; malignant", - "Glioblastoma; IDH-mutant", - "Chondroid chordoma", - "Clear cell adenocarcinofibroma", - "Pericanalicular fibroadenoma", - "Endometrioid adenocarcinoma; villoglandular", - "Periosteal sarcoma; NOS", - "Alveolar soft part sarcoma", - "Biliary papillomatosis", - "Pigmented schwannoma", - "Papillary carcinoma; encapsulated", - "Reticulosarcoma; diffuse", - "Chronic myelogenous leukemia; Philadelphia chromosome (Ph 1) positive", - "Angioleiomyoma", - "Secondary carcinoma", - "Langerhans cell histiocytosis; disseminated", - "Acute basophilic leukaemia", - "Anaplastic large cell lymphoma; T cell and Null cell type", - "Meningeal sarcoma", - "Nodular hidradenoma", - "Junction nevus", - "Malignant lymphoma; centroblasticcentrocytic; NOS", - "Epithelioid mesothelioma; NOS", - "Adenofibroma; NOS", - "Arteriovenous hemangioma", - "Acute promyelocytic leukaemia; t(15;17)(q22;q11-12)", - "Follicular lymphoma; grade 3A", - "Bronchiolar adenocarcinoma", - "Adenocarcinoma with apocrine metaplasia", - "Undifferentiated epithelioid sarcoma", - "Duct carcinoma; desmoplastic type", - "Fibrochondrosarcoma", - "Adult teratoma; NOS", - "Chronic myelomonocytic leukemia; Type 1", - "Squamous cell carcinoma; HPV-positive", - "Cerebellar sarcoma; NOS", - "Masculinovoblastoma", - "Schmincke tumor", - "Malignant lymphoma; mixed small and large cell; diffuse", - "Ectopic hamartomatous thymoma", - "Mucosal lentiginous melanoma", - "Serous adenocarcinoma; NOS", - "Gangliocytoma", - "Large cell (Ki-1+) lymphoma", - "Comedocarcinoma; noninfiltrating", - "Nonencapsulated sclerosing carcinoma", - "Esophageal glandular dysplasia (intraepithelial neoplasia); low grade", - "Malignant lymphoma; small lymphocytic; diffuse", - "Hairy nevus", - "Chronic myelomonocytic leukemia; NOS", - "Acute lymphoid leukemia", - "Medulloblastoma; group 4", - "Pilomatrixoma; malignant", - "Adenomatous polyp; NOS", - "Inflammatory liposarcoma", - "Thymoma; type C", - "Clear cell cystic tumor of borderline malignancy", - "Malignant lymphoma; mixed cell type; diffuse", - "Somatostatinoma; NOS", - "Acinic cell adenocarcinoma", - "Osteoblastoma; NOS", - "Adrenal cortical adenoma; glomerulosa cell", - "Squamous cell carcinoma; sarcomatoid", - "Thymoma; spindle cell; NOS", - "Atypical follicular adenoma", - "Chronic neutrophilic leukemia", - "Epidermoid carcinoma; small cell; nonkeratinizing", - "Mesothelioma; biphasic; NOS", - "Transitional cell carcinoma", - "Acoustic neuroma", - "Ductal intraepithelial neoplasia 3", - "Chronic lymphocytic leukemia; B-cell type (includes all variants of BCLL)", - "Oligodendroblastoma", - "Mucinous cystoma", - "Tumor; secondary", - "Acquired cystic disease-associated renal cell carcinoma (RCC)", - "Liver cell adenoma", - "Mucinous carcinoma; gastric type", - "Papillary syringocystadenoma", - "Hemangiopericytoma; malignant", - "Intraductal papillary mucinous neoplasm with high grade dysplasia", - "Tanycytic ependymoma", - "Vaginal intraepithelial neoplasia; grade III", - "Blastoma; NOS", - "Lobular and ductal carcinoma", - "Squamous cell carcinoma; microinvasive", - "Retinal anlage tumor", - "Genital rhabdomyoma", - "Histiocytosis X; NOS", - "Gastrointestinal stromal tumor; uncertain malignant potential", - "Neurilemoma; malignant", - "Acute leukemia; Burkitt type", - "Insulinoma; malignant", - "Pseudomucinous cystadenocarcinoma; NOS", - "Serous tubal intraepithelial carcinoma", - "Encapsulated papillary carcinoma", - "Pulmonary myxoid sarcoma with EWSR1-CREB1 translocation", - "Papillary carcinoma; columnar cell", - "Acute progressive histiocytosis X", - "Jugular paraganglioma", - "Melanocytoma; NOS", - "Adult T-cell lymphoma/leukemia", - "Mucinous adenofibroma; NOS", - "Brenner tumor; malignant", - "Immunoproliferative disease; NOS", - "Anaplastic oligodendroglioma; IDH-mutant and 1p/19q-codeleted", - "Epithelioid cell melanoma", - "Invasive lobular carcinoma", - "Small congenital nevus", - "Malignant lymphoma; large cell; NOS", - "Malignant lymphoma; mixed small cleaved and large cell; follicular", - "Malignant tenosynovial giant cell tumor", - "Epithelioid hemangioendothelioma; NOS", - "Beta cell adenoma", - "Pigmented spindle cell nevus of Reed", - "Malignant schwannoma; NOS", - "Hodgkin lymphoma; nodular sclerosis; cellular phase", - "Glioblastoma multiforme", - "Giant cell tumor of tendon sheath", - "Sebaceous carcinoma", - "Carcinoma in pleomorphic adenoma", - "Medulloblastoma; WNT-activated", - "Tumor cells; benign", - "Ecchondroma", - "Diffuse astrocytoma; IDH-wildtype", - "Atypical proliferative endometrioid tumor", - "Lentigo maligna melanoma", - "Gliosarcoma", - "Sertoli-Leydig cell tumor; retiform; with heterologous elements", - "Cystadenofibroma; NOS", - "FAB M2; t(8;21)(q22;q22)", - "Waldenstrom macroglobulinemia", - "Clear cell cystadenocarcinofibroma", - "Tumor; benign", - "Acute myeloblastic leukemia", - "Malignant lymphoma; mixed cell type; nodular", - "Eosinophil adenoma", - "Psammomatous schwannoma", - "Papillary carcinoma; oxyphilic cell", - "Granulocytic leukemia; NOS", - "Basal cell epithelioma", - "Malignant hydatidiform mole", - "Liposarcoma; well differentiated", - "Micropapillary serous carcinoma", - "Teratoma; differentiated", - "Sclerosing stromal tumor", - "Endocrine tumor; functioning; NOS", - "Marginal zone B-cell lymphoma; NOS", - "Cylindroma; NOS", - "Follicular dendritic cell tumor", - "Malignant giant cell tumor of soft parts", - "Malignant lymphoma; large cell; immunoblastic", - "Malignant lymphoma; plasmacytoid", - "NK-cell large granular lymphocytic leukemia", - "Squamous cell carcinoma in situ; NOS", - "Ameloblastic fibroma", - "Adenomyoepithelioma with carcinoma", - "Reticulosarcoma; NOS", - "GIST; benign", - "Inflammatory myofibroblastic tumor", - "Mixed phenotype acute leukemia; T/myeloid; NOS", - "Pleomorphic cell sarcoma", - "Multiple endocrine adenomas", - "Squamous cell epithelioma", - "Follicular dendritic cell sarcoma", - "Myeloid and lymphoid neoplasms with FGFR1 abnormalities", - "Anaplastic large B-cell lymphoma", - "Adenocarcinoma with cartilaginous metaplasia", - "Anaplastic pleomorphic xanthroastrocytoma", - "Intraneural perineurioma", - "Paget disease of breast", - "Acinic cell tumor", - "Malignant lymphoma; large B-cell; diffuse; NOS", - "Renal medullary carcinoma", - "Giant cell tumor of bone; NOS", - "Traditional sessile serrated adenoma", - "Mixed acinar-endocrine-ductal carcinoma", - "MPNST with rhabdomyoblastic differentiation", - "Intraductal papillary-mucinous carcinoma; invasive", - "Hilus cell tumor", - "Lentigo maligna", - "Papillary and follicular adenocarcinoma", - "Brenner tumor; NOS", - "Malignant lymphoma; small B lymphocytic; NOS", - "Desmoplastic melanoma; amelanotic", - "Chronic idiopathic myelofibrosis", - "Infiltrating papillary adenocarcinoma", - "Hepatocellular carcinoma; sarcomatoid", - "Mixed mesenchymal tumor", - "Chronic granulocytic leukemia; BCR/ABL", - "Pre-B ALL", - "B lymphoblastic leukemia/lymphoma with t(5;14)(q31;q32); IL3-IGH", - "Micropapillary adenocarcinoma", - "GIST; NOS", - "Solid adenocarcinoma with mucin formation", - "Epithelioid hemangioendothelioma; malignant", - "Endometrioid adenocarcinoma; ciliated cell variant", - "Malignant lymphoma; large B-cell; diffuse; immunoblastic; NOS", - "Myelocytic leukemia; NOS", - "Adenocarcinoma in situ; mucinous", - "Enteropathy type intestinal T-cell lymphoma", - "Transitional cell papilloma; NOS", - "Adenosarcoma", - "Hemangioblastic meningioma", - "Fibromyxoma", - "Neurofibrosarcoma", - "Infiltrating duct and lobular carcinoma in situ", - "Glomangiosarcoma", - "Myoepithelial tumor", - "Giant osteoid osteoma", - "Hodgkin lymphoma; nodular lymphocyte predominance", - "Invasive carcinoma of no special type", - "Adrenal cortical adenoma; NOS", - "Compound nevus", - "Aortic body paraganglioma", - "Anaplastic oligoastrocytoma", - "Microfollicular adenoma; NOS", - "Combined small cell carcinoma", - "Neurosarcoma", - "VAIN III", - "Chorioangioma", - "Neurothekeoma", - "Rhabdomyosarcoma with ganglionic differentiation", - "Spindle epithelial tumor with thymus-like element", - "Teratoma; benign", - "Keratotoc papilloma", - "Low-grade serous carcinoma", - "AML M6", - "Anaplastic large cell lymphoma; ALK negative", - "Anaplastic medulloblastoma", - "Glucagon-like peptide-producing tumor", - "Hodgkin lymphoma; nodular sclerosis; grade 1", - "Adult rhabdomyoma", - "MALT lymphoma", - "Mixed mesenchymal sarcoma", - "Myofibroblastic tumor; peribronchial", - "Angiocentric glioma", - "Peripheral primitive neuroectodermal tumor; NOS", - "Flat intraepithelial glandular neoplasia; high grade", - "Peripheral T-cell lymphoma; AILD (Angioimmunoblastic Lymphadenopathy with Dysproteinemia)", - "Malignant lymphoma; cleaved cell; NOS", - "Esthesioneurocytoma", - "Refractory anemia with sideroblasts", - "Aggressive fibromatosis", - "Chronic granulocytic leukemia; NOS", - "Piloid astrocytoma", - "Interstitial cell tumor; benign", - "Malignant lymphoma; centroblastic; follicular", - "Mixed pineal tumor", - "Renal cell carcinoma; NOS", - "Malignant lymphoma; lymphocytic; intermediate differentiation; nodular", - "Malignant chondroid syringoma", - "Ductal carcinoma in situ; micropapillary", - "Glandular intraepithelial neoplasia; high grade", - "Embryonal sarcoma", - "Stem cell leukemia", - "Synovial sarcoma; epithelioid cell", - "Mucinous cystadenocarcinofibroma", - "Large B-cell lymphoma arising in HHV8-associated multicentric Castleman disease", - "Low grade appendiceal mucinous neoplasm", - "Solid papillary carcinoma in situ", - "Differentiated-type vulvar intraepithelial neoplasia", - "T-cell lymphoma; NOS", - "Undifferentiated round cell sarcoma", - "Dermoid cyst with secondary tumor", - "Hidradenocarcinoma", - "Pleomorphic adenoma", - "Atypical fibrous histiocytoma", - "Subepidermal nodular fibrosis", - "Acute myeloid leukemia with maturation", - "Angioendotheliomatosis", - "Black adenoma", - "Chondroid lipoma", - "Immunocytoma", - "Androblastoma; malignant", - "Steroid cell tumor; malignant", - "Germ cell tumor; nonseminomatous", - "Osteosarcoma; NOS", - "M6A", - "Extraosseous plasmacytoma", - "Primary myelofibrosis", - "Reticulohistiocytoma", - "Sinonasal papilloma; NOS", - "Desmoplastic small round cell tumor", - "Monomorphic adenoma", - "C cell carcinoma", - "Acute myeloid leukemia with mutated NPM1", - "Myeloid neoplasms with PDGFRB rearrangement", - "FAB L2", - "Transitional cell carcinoma; sarcomatoid", - "Biliary intraepithelial neoplasia; low grade", - "Plexiform fibromyxoma", - "Undifferentiated uterine sarcoma", - "Sweat gland adenoma", - "Acute myeloid leukemia; minimal differentiation", - "Lymphocytic leukemia; NOS", - "Teratoma; NOS", - "Desmoplastic infantile astrocytoma", - "Neurilemoma; NOS", - "Intraductal papillary-mucinous tumor with intermediate dysplasia", - "Carcinoid tumor; NOS", - "Syringoma; NOS", - "Mantle cell lymphoma (Includes all variants blastic; pleomorphic; small cell)", - "Large cell carcinoma with rhabdoid phenotype", - "Deep histiocytoma", - "Chromophobe cell renal carcinoma", - "Synovial sarcoma; spindle cell", - "Thecoma; luteinized", - "Solitary fibrous tumor/hemangiopericytoma Grade 2 (CNS)", - "Adenoacanthoma", - "Acinar cell carcinoma", - "Acute panmyelosis; NOS", - "Glioma; NOS", - "Goblet cell carcinoid", - "Comedocarcinoma; NOS", - "Sclerosing hemangioma", - "Cellular blue nevus", - "Lipomatous medulloblastoma", - "Angioimmunoblastic lymphoma", - "Elastofibroma", - "Mixed germ cell tumor", - "Myosarcoma", - "Lipid-rich carcinoma", - "Hodgkin paragranuloma; nodular", - "Androblastoma; NOS", - "Epithelioid glioblastoma", - "Basaloid squamous cell carcinoma", - "Subcutaneous panniculitis-like T-cell lymphoma", - "Cystosarcoma phyllodes; NOS", - "Squamous intraepithelial neoplasia; grade I", - "Myelomonocytic leukemia; NOS", - "Ameloblastic fibro-odontoma", - "Pro-T ALL", - "Partial hydatidiform mole", - "Malignant lymphoma; large cell; noncleaved; diffuse", - "Rhabdoid meningioma", - "Beta cell tumor; malignant", - "Abdominal desmoid", - "Atypical medullary carcinoma", - "Sertoli-Leydig cell tumor; well differentiated", - "Sympathetic paraganglioma", - "Mixed invasive mucinous and non-mucinous adenocarcinoma", - "Stromal tumor; NOS", - "Wolffian duct tumor", - "Odontoma; NOS", - "Plexiform neurofibroma", - "Sezary syndrome", - "Thymoma; lymphocyte-rich; malignant", - "Arrhenoblastoma; benign", - "Acute lymphoblastic leukemia; precursor cell type", - "Sweat gland tumor; malignant", - "Idiopathic hemorrhagic thrombocythaemia", - "Mixed acidophil-basophil adenoma", - "Adrenal cortical tumor; benign", - "High-grade neuroendocrine carcinoma", - "Squamous cell carcinoma; nonkeratinizing; NOS", - "B lymphoblastic leukemia/lymphoma; NOS", - "Adenocystic carcinoma", - "Classical Hodgkin lymphoma; nodular sclerosis; grade 1", - "Mixed adenoneuroendocrine carcinoma", - "Ovarian stromal tumor", - "Hepatoid yolk sac tumor", - "Classical Hodgkin lymphoma; lymphocyte depletion; diffuse fibrosis", - "Carcinoma in situ in adenomatous polyp", - "Malignant melanoma in precancerous melanosis", - "Thymoma; organoid; malignant", - "Adult T-cell leukemia", - "Burkitt lymphoma; NOS (Includes all variants)", - "Adrenal cortical tumor; NOS", - "Large cell carcinoma; NOS", - "Macrofollicular adenoma", - "Round cell osteosarcoma", - "Apudoma", - "Chordoid meningioma", - "Calcifying epithelial odontogenic tumor", - "Ewing sarcoma", - "Mixed pineocytoma-pineoblastoma", - "MPNST with glandular differentiation", - "Medulloblastoma; group 3", - "Microcystic adenoma", - "Somatostatin cell tumor; NOS", - "Subacute granulocytic leukemia", - "Botryoid sarcoma", - "Sebaceous adenocarcinoma", - "Leiomyofibroma", - "Malignant tumor; fusiform cell type", - "Malignant lymphoma; large cell; noncleaved; NOS", - "Malignant lymphoma; histiocytic; diffuse", - "Cutaneous lymphoma; NOS", - "Syringofibroadenoma", - "Noninfiltrating intracystic carcinoma", - "Intraductal papilloma", - "Mucinous cystic neoplasm with intermediate-grade intraepithelial neoplasia", - "Paget disease and infiltrating duct carcinoma of breast", - "G cell tumor; malignant", - "Astroblastoma", - "Giant cell tumor of tendon sheath; malignant", - "Ductal carcinoma in situ; cribriform type", - "Tubulo-papillary adenoma", - "Intravascular bronchial alveolar tumor", - "FAB M5 (includes all variants)", - "Plexiform neuroma", - "Eccrine adenocarcinoma", - "Embryonal adenoma", - "Intraductal papilloma with lobular carcinoma in situ", - "Sertoli-Leydig cell tumor; NOS", - "Lobular adenocarcinoma", - "Condylomatous carcinoma", - "Mucinous tubular and spindle cell carcinoma", - "Mullerian mixed tumor", - "Hodgkin disease; nodular sclerosis; NOS", - "Acute lymphatic leukemia", - "Glomangiomyoma", - "Papillary cystadenocarcinoma; NOS", - "Subacute myeloid leukemia", - "Sclerosing sweat duct carcinoma", - "Tumor; NOS", - "Dysplastic gangliocytoma of cerebellum (Lhermitte-Duclos)", - "Primary diffuse large B-cell lymphoma of the CNS", - "Cellular schwannoma", - "Lymphoblastoma", - "Hodgkin lymphoma; NOS", - "Lymphangiomyoma", - "Polycythemia vera", - "Mucinous adenoma", - "Chondroblastoma; NOS", - "Intraductal papillary-mucinous tumor with moderate dysplasia", - "Papillary pseudomucinous cystadenoma; borderline malignancy", - "Brenner tumor; borderline malignancy", - "Bronchial adenoma; cylindroid", - "Tubular adenoma; NOS", - "Epithelioid hemangioma", - "Poorly cohesive carcinoma", - "Neoplasm; malignant", - "Reninoma", - "Infiltrating duct carcinoma; NOS", - "Tubular androblastoma with lipid storage", - "Minimally invasive adenocarcinoma; NOS", - "Mucoid cell adenoma", - "Hypernephroma", - "Lymphoepithelioma", - "EC cell carcinoid", - "Cementoblastoma; benign", - "Chronic lymphoproliferative disorder of NK cells", - "Essential hemorrhagic thrombocythaemia", - "Malignant serous cystadenofibroma", - "Enterochromaffin-like cell carcinoid; NOS", - "Mesonephric tumor; NOS", - "Carcinoma with osseous differentiation", - "Glandular intraepithelial neoplasia; grade II", - "Oligoastrocytoma", - "Invasive mole; NOS", - "Papillary mucinous tumor of low malignant potential", - "Embryonal tumor with multilayered rosettes C19MC-altered", - "Mesonephroma; NOS", - "Thymoma; mixed type; NOS", - "Acute panmyelosis with myelofibrosis", - "Glomus tumor; NOS", - "Thymoma; predominantly cortical; NOS", - "Melanotic neurofibroma", - "Telangiectatic osteosarcoma", - "Leiomyoma; NOS", - "Myofibroblastic sarcoma", - "Low-grade myofibroblastic sarcoma", - "Malignant schwannoma with rhabdomyoblastic differentiation", - "Intravascular large B-cell lymphoma", - "Atypical lipoma", - "Mucinous cystic tumor with an associated invasive carcinoma", - "ECL cell carcinoid; NOS", - "Trichofolliculoma", - "Epithelioid mesothelioma; malignant", - "Hilar cell tumor", - "Islet cell adenomatosis", - "Classical Hodgkin lymphoma; nodular sclerosis; cellular phase", - "Melanoma; NOS", - "Round cell liposarcoma", - "Papillomatosis; glandular", - "Oxyphilic adenoma", - "Spindle cell melanoma; NOS", - "Malignant lymphoma; small cell diffuse", - "Serous cystoma", - "Ossifying renal tumor", - "Acute lymphoblastic leukemia; L2 type; NOS", - "Cystosarcoma phyllodes; malignant", - "Pilomatricoma; NOS", - "Malignant serous adenofibroma", - "Adenocarcinoma with osseous metaplasia", - "Aleukemic myelogenous leukemia", - "Myoma", - "Basal cell adenocarcinoma", - "Adrenal cortical tumor; malignant", - "Acute myelomonocytic leukemia with abnormal eosinophils", - "Refractory cytopenia of childhood", - "Parietal cell adenocarcinoma", - "Hurthle cell adenocarcinoma", - "Nonencapsulated sclerosing tumor", - "Retinoblastoma; differentiated", - "Struma ovarii; malignant", - "Malignant lymphoma; immunoblastic; NOS", - "Papillary transitional cell neoplasm of low malignant potential", - "Large granular lymphocytosis; NOS", - "Therapy related myeloid neoplasm", - "Clear cell chondrosarcoma", - "Vascular leiomyoma", - "Classical Hodgkin lymphoma; lymphocyte depletion; reticular", - "Myxoid fibroma", - "Granular cell tumor; NOS", - "Adrenal cortical carcinoma", - "Interdigitating dendritic cell sarcoma", - "Oncocytic adenocarcinoma", - "Renal cell carcinoma; unclassified", - "Papillary microcarcinoma", - "Lymphangioendothelioma; malignant", - "Mucinous cystic tumor with intermediate dysplasia", - "G cell tumor; NOS", - "Struma ovarii and carcinoid", - "Alveolar adenocarcinoma", - "Refractory cytopenia with multilineage dysplasia", - "MPNST; NOS", - "Myeloma; NOS", - "Osteoma; NOS", - "Diffuse astrocytoma; IDH-mutant", - "Aleukemic leukemia; NOS", - "Anaplastic large cell lymphoma; CD30+", - "Polymorphous low grade adenocarcinoma", - "Papillary epidermoid carcinoma", - "Leptomeningeal sarcoma", - "Malignant lymphoma; large cell; follicular; NOS", - "Pseudosarcomatous carcinoma", - "T-cell large granular lymphocytic leukemia", - "Leydig cell tumor; NOS", - "Smooth muscle tumor; NOS", - "Letterer-Siwe disease", - "Plasma cell tumor", - "Adenocarcinoma with neuroendocrine differentiation", - "Tumor; metastatic", - "Achromic nevus", - "unknown", - "Adenocarcinoma; metastatic; NOS", - "Carcinoid; NOS; of appendix", - "Nephroblastoma; NOS", - "Squamous cell carcinoma; adenoid", - "Mixed adenocarcinoma and squamous cell carcinoma", - "Plexiform leiomyoma", - "Tumor; malignant; NOS", - "Hepatocholangiocarcinoma", - "Atypical leiomyoma", - "Chronic myeloproliferative disease; NOS", - "Colloid adenocarcinoma", - "Germ cell tumor; NOS", - "Primary cutaneous follicle centre lymphoma", - "MPNST with mesenchymal differentiation", - "Mucoepidermoid tumor", - "Cystic teratoma; NOS", - "Retinoblastoma; spontaneously regressed", - "Intraductal adenocarcinoma; noninfiltrating; NOS", - "B cell lymphoma; NOS", - "Chronic myeloid leukemia; NOS", - "Not Reported", - "Mixed epithelioid and spindle cell melanoma", - "Odontogenic myxofibroma", - "Angiocentric T-cell lymphoma", - "Mast cell sarcoma", - "Neuroendocrine carcinoma; poorly differentiated", - "Papillary serous tumor of low malignant potential", - "Histiocyte-rich large B-cell lymphoma", - "T lymphoblastic leukemia/lymphoma", - "Intermediate and giant congenital nevus", - "Medulloblastoma; NOS", - "Teratoma with malignant transformation", - "Epithelial-myoepithelial carcinoma", - "Angioblastoma", - "Intraductal carcinoma; clinging", - "Intraepidermal carcinoma; NOS", - "Primary cutaneous CD8-positive aggressive epidermotropic cytotoxic T-cell lymphoma", - "Syringocystadenoma papilliferum", - "Bronchiolo-alveolar carcinoma; goblet cell type", - "Intraductal papillary neoplasm with intermediate grade neoplasia", - "Endocervical adenocarcinoma usual type", - "Lymphoblastic leukemia; NOS", - "Synovial sarcoma; NOS", - "Malignant lymphoma; NOS", - "Sarcomatosis; NOS", - "Malignant lymphoma; convoluted cell", - "Myeloid sarcoma", - "Small cell carcinoma pulmonary type", - "Papillary tumor of the pineal region", - "Transitional cell carcinoma; spindle cell", - "Rhabdosarcoma", - "Classical Hodgkin lymphoma; nodular sclerosis; NOS", - "Adenolipoma", - "Squamous cell carcinoma; HPV-negative", - "Histiocytic medullary reticulosis", - "Combined carcinoid and adenocarcinoma", - "Squamous intraepithelial neoplasia; high grade", - "Acidophil adenoma", - "Pulmonary artery intimal sarcoma", - "Myxoid chondrosarcoma", - "Differentiated penile intraepithelial neoplasia", - "Meningeal melanoma", - "Non-Hodgkin lymphoma; NOS", - "Mucinous cystic neoplasm with an associated invasive carcinoma", - "ALK positive large B-cell lymphoma", - "Combined small cell-large carcinoma", - "Lobular carcinoma; NOS", - "Adnexal tumor; benign", - "Hurthle cell tumor", - "PEComa; malignant", - "Melanotic medulloblastoma", - "Pituitary carcinoma; NOS", - "Villous papilloma", - "Tumorlet; NOS", - "Undifferentiated leukaemia", - "Eccrine acrospiroma", - "Mixed phenotype acute leukemia with t(9;22)(q34;q11.2); BCR-ABL1", - "Benign cystic nephroma", - "Acute promyelocytic leukaemia; PML-RAR-alpha", - "Adenocarcinoma with cartilaginous and osseous metaplasia", - "Carcinosarcoma; NOS", - "Rosette-forming glioneuronal tumor", - "Intraductal papillary neoplasm; NOS", - "Papillary renal cell carcinoma", - "Tubular carcinoma", - "Sweat gland tumor; benign", - "Klatskin tumor", - "Cystosarcoma phyllodes; benign", - "Nested urothelial carcinoma", - "Spindle cell hemangioendothelioma", - "Neurolipocytoma", - "Angiomyxoma", - "Mucinous cystadenocarcinoma; non-invasive", - "Cystic mesothelioma; NOS", - "Subacute lymphocytic leukemia", - "Capillary lymphangioma", - "Desmoplastic mesothelioma", - "Osteofibrosarcoma", - "Malignant lymphoma; diffuse; NOS", - "Atypical proliferative mucinous tumor", - "Intraductal tubular-papillary neoplasm; low grade", - "FAB M4Eo", - "Intestinal T-cell lymphoma", - "Multicystic mesothelioma; benign", - "Pilomatrixoma; NOS", - "Myelodysplastic syndrome with isolated del (5q)", - "Malignant lymphoma; undifferentiated cell type; NOS", - "Mesenchymal chondrosarcoma", - "Schneiderian papilloma; inverted", - "Mixed hepatocellular and bile duct carcinoma", - "Thymoma; malignant; NOS", - "Malignant lymphoma; centroblastic; NOS", - "Papilloma of bladder", - "Pagetoid reticulosis", - "Malignant fibrous histiocytoma (MFH) of bone", - "Subacute leukemia; NOS", - "Granulocytic sarcoma", - "Neurogenic sarcoma", - "Noninfiltrating intraductal papillary carcinoma", - "Cementifying fibroma", - "Lymphangioendothelial sarcoma", - "Papillary serous adenocarcinoma", - "Malignant myoepithelioma", - "Mesonephric adenocarcinoma", - "Circumscribed arachnoidal cerebellar sarcoma", - "Mucin-producing carcinoma", - "Apocrine cystadenoma", - "Monoclonal gammopathy of undetermined significance", - "Olfactory neurogenic tumor", - "Medullary carcinoma; NOS", - "Fibroxanthoma; malignant", - "Chronic eosinophilic leukemia; NOS", - "Composite Hodgkin and non-Hodgkin lymphoma", - "Fetal lipoma; NOS", - "Mature T ALL", - "Fibroblastic liposarcoma", - "Malignant lymphoma; small cell; NOS", - "Bronchiolo-alveolar carcinoma; type II pneumocyte and goblet cell type", - "Myelodysplastic/myeloproliferative neoplasm; unclassifiable", - "Metanephric adenoma", - "Nonencapsulated sclerosing adenocarcinoma", - "Endometrioid cystadenofibroma; NOS", - "Intraductal papillary-mucinous neoplasm with moderate dysplasia", - "Pilomatricoma; malignant", - "Metaplastic carcinoma of no special type", - "Acquired tufted hemangioma", - "Dermatofibrosarcoma protuberans; NOS", - "Malignant lymphoma; small cell; noncleaved; diffuse", - "Medullary carcinoma with amyloid stroma", - "Pigmented nevus; NOS", - "Angiomatous meningioma", - "Mixed glioma", - "AIN III", - "Adenocarcinoma in situ in polypoid adenoma", - "Malignant lymphoma; follicle center; follicular", - "Odontogenic fibrosarcoma", - "Lipoblastoma", - "Sympathicoblastoma", - "Acute lymphoblastic leukemia-lymphoma; NOS", - "Reserve cell carcinoma", - "Intracortical osteosarcoma", - "Thymoma; type B1; malignant", - "Intraglandular papillary neoplasm with low grade intraepithelial neoplasia", - "Hodgkin disease; lymphocytic-histiocytic predominance", - "Adenomyoma", - "Urothelial papilloma; NOS", - "Mesonephroma; benign", - "Mature T-cell lymphoma; NOS", - "Noninvasive pancreatobiliary papillary neoplasm with high grade intraepithelial neoplasia", - "Acute lymphocytic leukemia", - "Acute myeloid leukemia with inv(3)(q21q26.2) or t(3;3)(q21;q26.2); RPN1-EVI1", - "Paget disease and intraductal carcinoma of breast", - "Cystic mesothelioma; benign", - "Pigmented adenoma", - "Adenocarcinoma of rete ovarii", - "Meningothelial meningioma", - "Embryonal adenocarcinoma", - "Microcystic meningioma", - "Syringadenoma; NOS", - "Embryonal carcinoma; NOS", - "Adenoma of nipple", - "Cancer", - "Low grade cribriform cystadenocarcinoma (LGCCC)", - "Urothelial carcinoma with squamous differentiation", - "Malignant histiocytosis", - "Mixed tumor; NOS", - "Malignant multilocular cystic nephroma", - "Medulloblastoma; SHH-activated and TP53-mutant", - "Bizarre leiomyoma", - "Mucoid carcinoma", - "Myelodysplastic syndrome with 5q deletion (5q-) syndrome", - "Unclassified tumor; borderline malignancy", - "Clear cell (glycogen-rich) urothelial carcinoma", - "Malignant tumor; small cell type", - "Intraductal papillary neoplasm with high grade intraepithelial neoplasia", - "Lymphomatoid papulosis", - "Polypoid adenoma", - "Sarcoma botryoides", - "Intraductal papillary-mucinous carcinoma; non-invasive", - "Reticulum cell sarcoma; diffuse", - "Non-invasive encapsulated follicular variant of papillary thyroid carcinoma (non-invasive EFVPTC)", - "Malignant tumor; giant cell type", - "Indolent systemic mastocytosis", - "Merkel cell tumor", - "Epithelioid leiomyosarcoma", - "Common precursor B ALL", - "Hodgkin disease; nodular sclerosis; syncytial variant", - "Osteoblastoma; malignant", - "Malignant melanoma; NOS", - "Primary cutaneous neuroendocrine carcinoma", - "Squamous cell carcinoma; keratinizing; NOS", - "Myxofibroma; NOS", - "Low-grade fibromyxoid sarcoma", - "Medullocytoma", - "Malignant lymphoma; large B-cell; NOS", - "Polymorphic reticulosis", - "Paget disease; mammary", - "Astrocytoma; low grade", - "Epithelioid and spindle cell nevus", - "Astroglioma", - "Microcystic adnexal carcinoma", - "Hurthle cell adenoma", - "Liver cell carcinoma", - "B lymphoblastic leukemia/lymphoma with t(v;11q23); MLL rearranged", - "Alveolar rhabdomyosarcoma", - "Parasympathetic paraganglioma", - "Papillary cystadenoma; NOS", - "Mixed cell adenoma", - "Mucinous cystic tumor with high-grade dysplasia", - "Sclerosing hepatic carcinoma", - "Intracystic papillary neoplasm with associated invasive carcinoma", - "Pseudomucinous cystadenoma; NOS", - "Juxtacortical chondroma", - "Biliary intraepithelial neoplasia; high grade", - "Dysembryoplastic neuroepithelial tumor", - "Fibroadenoma; NOS", - "Hodgkin lymphoma; nodular sclerosis; NOS", - "Chronic erythremia", - "Leukemia; NOS", - "Interstitial cell tumor; NOS", - "Mixed endocrine and exocrine adenocarcinoma", - "Spindle cell melanoma; type A", - "Acute monoblastic leukemia", - "Giant cell sarcoma", - "Dermal nevus", - "Hodgkin lymphoma; lymphocyte predominance; nodular", - "Preleukemic syndrome", - "Plasmacytoma; NOS", - "Juxtacortical osteosarcoma", - "Thymic carcinoma with adenoid cystic carcinoma-like features", - "Papillotubular adenoma", - "Endodermal sinus tumor", - "Endolymphatic stromal myosis", - "Carcinoma; NOS", - "Solid pseudopapillary carcinoma", - "Sertoli cell tumor with lipid storage", - "Papillary carcinoma; follicular variant", - "Squamotransitional cell carcinoma", - "Polyembryoma", - "Balloon cell melanoma", - "Refractory anemia with ringed sideroblasts", - "Eosinophilic leukemia", - "Sebaceous epithelioma", - "Acute non-lymphocytic leukemia", - "Myxoliposarcoma", - "FAB M1", - "Angioendothelioma", - "Cloacogenic carcinoma", - "Endometrial stromal sarcoma; high grade", - "Precursor cell lymphoblastic leukemia; not phenotyped", - "Thymoma; atypical; malignant", - "Melanotic schwannoma", - "Classical Hodgkin lymphoma; lymphocyte-rich", - "Chondroblastoma; malignant", - "Combined small cell-adenocarcinoma", - "Ossifying fibromyxoid tumor", - "Osteocartilaginous exostosis", - "Follicular lymphoma; grade 1", - "NUT midline carcinoma", - "Epidermoid carcinoma; large cell; nonkeratinizing", - "Fibroblastic reticular cell tumor", - "Hibernoma", - "Atypical proliferating serous tumor", - "Giant cell tumor of bone; malignant", - "Primary cutaneous DLBCL; leg type", - "Neurotropic melanoma; malignant", - "Serous surface papillary carcinoma", - "Hodgkin disease; nodular sclerosis; mixed cellularity", - "Lipoleiomyoma", - "Intracystic papillary neoplasm with low grade intraepithelial neoplasia", - "Multicentric basal cell carcinoma", - "Papillary syringadenoma", - "Dedifferentiated chordoma", - "Medulloblastoma; classic", - "Chromophobe adenocarcinoma", - "Adenocarcinoma; cylindroid", - "Melanoameloblastoma", - "Orchioblastoma", - "Round cell sarcoma", - "Indeterminate dendritic cell tumor", - "Hydatid mole", - "Metaplastic carcinoma with other types mesenchymal differentiation", - "Clear cell sarcoma of kidney", - "Malignancy", - "Malignant lymphoma; small noncleaved; Burkitt type", - "Odontogenic carcinoma", - "Seminoma; NOS", - "Melanocytoma; eyeball", - "Fibrous meningioma", - "Malignant lymphoma; histiocytic; nodular", - "Magnocellular nevus", - "Glandular intraepithelial neoplasia; low grade", - "Melanotic psammomatous MPNST", - "Smooth muscle tumor of uncertain malignant potential", - "Invasive fibroma", - "Psammomatous meningioma", - "Merkel cell carcinoma", - "Intraductal papillary-mucinous tumor with low grade dysplasia", - "Trichilemmal carcinoma", - "Therapy-related myelodysplastic syndrome; alkylating agent related", - "Ghost cell odontogenic carcinoma", - "Leiomyoblastoma", - "Enteric adenocarcinoma", - "Renal cell carcinoma; sarcomatoid", - "Precursor B-cell lymphoblastic leukemia", - "Intimal sarcoma", - "Metastatic signet ring cell carcinoma", - "Cutaneous T-cell lymphoma; NOS", - "Esophageal glandular dysplasia (intraepithelial neoplasia); high grade", - "Pseudomyxoma peritonei with unknown primary site", - "Enchondroma", - "Pancreatic peptide and pancreatic peptide-like peptide within terminal tyrosine amide producing tumor", - "Syringomatous carcinoma", - "Sweat gland adenocarcinoma", - "Solid teratoma", - "Therapy-related acute myeloid leukemia; epipodophyllotoxin-related", - "Spermatocytic seminoma", - "Spongioblastoma; NOS", - "Small cell carcinoma; hypercalcemic type", - "Neuroendocrine carcinoma; well-differentiated", - "" - ] - }, - "Biospecimen Age at Collection": {}, - "Biospecimen_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Biospecimen Preservation Method": { - "enum": [ - "OCT", - "Fresh dissociated and single cell sorted into plates in NP40 buffer", - "Not Reported", - "Fresh", - "Cryopreserved", - "Cryopreservation in liquid nitrogen - dead tissue", - "Snap Frozen", - "Methacarn fixed paraffin embedded - MFPE", - "Fresh dissociated and single cell sorted", - "Liquid Nitrogen", - "Fresh dissociated and single cell sorted into plates", - "Fresh dissociated", - "Formalin fixed paraffin embedded - FFPE", - "Frozen", - "Formalin fixed-unbuffered", - "Negative 80 Deg C", - "unknown", - "Formalin fixed-buffered", - "Cryopreservation in dry ice - dead tissue", - "Cryopreservation in liquid nitrogen - live cells", - "" - ] - }, - "Biospecimen Acquisition Method": {}, - "Biospecimen Description": {}, - "Model Key": {} - }, - "required": [ - "Biospecimen Stain", - "Biospecimen Type", - "Biospecimen Embedding Medium", - "Component", - "Biospecimen Species", - "Biospecimen Fixative", - "Biospecimen_id" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.DataDSP.schema.json b/json_schemas/mc2.DataDSP.schema.json deleted file mode 100644 index 517c2ae2..00000000 --- a/json_schemas/mc2.DataDSP.schema.json +++ /dev/null @@ -1,933 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Study Key": {}, - "DSP Planned Release Date": {}, - "DSP Dataset Level": { - "type": "array", - "items": { - "enum": [ - "Level 2", - "Not Applicable", - "Level 1", - 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"$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Channel Metal Isotope": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Channel Fluorophore": {}, - "Channel Probe Concentration": {}, - "ImagingChannel_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Channel Probe Dilution Ratio": {}, - "Channel Target Name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Channel Emission Bandwidth": {}, - "Channel Antibody Clone": {}, - "Channel Identifier": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Channel Antibody Lot": {}, - "Channel Emission Wavelength": {}, - "Channel Metal Symbol": { - "enum": [ - "Sn", - "As", - "Ac", - "Po", - "Sr", - "Lr", - "Sb", - "Tc", - "Al", - "Ir", - "Ts", - "Zr", - "Pm", - "F", - "Bk", - "Rb", - "Xe", - "Br", - "Er", - "Ni", - "Ar", - "In", - "Gd", - "Y", - "Hg", - "Db", - "W", - "Mg", - "Na", - "Rh", - "Pb", - "Nh", - "Kr", - "Au", - "Ra", - "Cu", - "U", - "Ds", - "Cr", - "Ce", - "Th", - "Rf", - "He", - "Rg", - "Fm", - "Cl", - "K", - "Cn", - "P", - "Ga", - "Fe", - "Tl", - "Se", - "Li", - "V", - "Rn", - "Os", - "No", - "N", - "Tb", - "Ba", - "Ca", - "Bh", - "Re", - "Tm", - "Te", - "Mo", - "Pu", - "Cf", - "Ru", - "Lu", - "Sg", - "Ho", - "Fl", - "Es", - "Pt", - "H", - "S", - "I", - "Be", - "Ti", - "O", - "Zn", - "Np", - "Md", - "Mn", - "Pd", - "Hs", - "Mc", - "Si", - "Fr", - "Sm", - "Cs", - "B", - "Ta", - "Ag", - "Pr", - "Sc", - "Hf", - "Bi", - "La", - "Nb", - "Ne", - "Co", - "Lv", - "C", - "Ge", - "Cd", - "Nd", - "Pa", - "Mt", - "Dy", - "At", - "Og", - "Am", - "Yb", - "Eu", - "" - ] - }, - "Channel Oligo Barcode Lower Strand": {}, - "Channel Resource ID": {}, - "Channel Oligo Barcode Upper Strand": {}, - "Channel Antibody Name": {}, - "Channel Cycle Number": {}, - "Study Key": {}, - "Channel Excitation Bandwidth": {}, - "Channel Antibody Vendor": {}, - "Channel Antibody Catalog Number": {}, - "Channel Antibody Role": { - "enum": [ - "Secondary", - "Primary", - "" - ] - }, - "Channel Passed QC": { - "enum": [ - "No - Channel Failed QC", - "Yes", - "" - ] - }, - "Channel Excitation Wavelength": {}, - "Channel Name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Channel Sub-cycle Number": {} - }, - "required": [ - "Component", - "ImagingChannel_id", - "Channel Target Name", - "Channel Identifier", - "Channel Name" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.ImagingLevel1.schema.json b/json_schemas/mc2.ImagingLevel1.schema.json deleted file mode 100644 index d98488a9..00000000 --- a/json_schemas/mc2.ImagingLevel1.schema.json +++ /dev/null @@ -1,62 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Image Protocol Link": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Software": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Platform Manufacturer": {}, - "Image Platform Model": {}, - "ImagingLevel1_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "ImagingChannel Key": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Assay Type": { - "enum": [ - "t-CyCIF", - "CyCIF", - "GeoMX-DSP", - "IMC", - "mIHC", - "MIBI", - "H&E", - "ExSeq", - "MxIF", - "IHC", - "SABER", - "Not Applicable", - "MERFISH", - "CODEX", - "RareCyte Orion" - ] - } - }, - "required": [ - "Filename", - "Component", - "ImagingLevel1_id", - "ImagingChannel Key", - "Image Assay Type" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.ImagingLevel2.schema.json b/json_schemas/mc2.ImagingLevel2.schema.json deleted file mode 100644 index 2b4f0319..00000000 --- a/json_schemas/mc2.ImagingLevel2.schema.json +++ /dev/null @@ -1,111 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Image Z stack": {}, - "Image FOV Index": {}, - "Image FOV Size X Unit": {}, - "Image Pixels BigEndian": {}, - "Image X Pixels": {}, - "Image Physical Size Y Unit": {}, - "Image Timeseries": {}, - "Image Channel Size": {}, - "Image Software": {}, - "Image Physical Size X Unit": {}, - "ImagingLevel1 Key": {}, - "Image Pyramidal": {}, - "ImagingChannel Key": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Working Distance": {}, - "Image Pixel Type": {}, - "Image FOV Size X": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Physical Size Z Unit": {}, - "Image Objective": {}, - "Image Dimension Order": {}, - "Image Plane Count": {}, - "Image Assay Type": { - "enum": [ - "CyCIF", - "CODEX", - "MERFISH", - "SABER", - "IMC", - "IHC", - "MxIF", - "GeoMX-DSP", - "ExSeq", - "Not Applicable", - "mIHC", - "MIBI", - "RareCyte Orion", - "t-CyCIF", - "H&E" - ] - }, - "Image Physical Size Z": {}, - "Image Nominal Magnification": {}, - "Image FOV Size Y": {}, - "Image FOV Size Y Unit": {}, - "Image Frame Averaging": {}, - "Image Z Pixels": {}, - "ImagingLevel2_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Y Pixels": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Working Distance Unit": { - "enum": [ - "cm", - "nm", - "\u00c5", - "mm", - "\u00b5m", - "" - ] - }, - "Image Protocol Link": {}, - "Image Platform Model": {}, - "Image Identifier": {}, - "Image Platform Manufacturer": {}, - "Image Lense Aperture": {}, - "Image Number of Timepoints": {}, - "Image Physical Size Y": {}, - "Image Immersion Type": { - "enum": [ - "Oil", - "Water", - "other", - "Air", - "" - ] - }, - "Image Physical Size X": {} - }, - "required": [ - "ImagingChannel Key", - "Component", - "Image Assay Type", - "ImagingLevel2_id", - "Filename" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.ImagingLevel3Image.schema.json b/json_schemas/mc2.ImagingLevel3Image.schema.json deleted file mode 100644 index 47763685..00000000 --- a/json_schemas/mc2.ImagingLevel3Image.schema.json +++ /dev/null @@ -1,84 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Image Working Distance": {}, - "Image Z stack": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image FOV Size Y Unit": {}, - "Image Timeseries": {}, - "Image Pyramidal": {}, - "Image FOV Index": {}, - "Image Objective": {}, - "Image Platform Model": {}, - "ImagingLevel3Image_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Software": {}, - "Image Frame Averaging": {}, - "Image Protocol Link": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image FOV Size X": {}, - "Image Nominal Magnification": {}, - "Image Lense Aperture": {}, - "Image Assay Type": { - "enum": [ - "t-CyCIF", - "IMC", - "MERFISH", - "ExSeq", - "RareCyte Orion", - "mIHC", - "MxIF", - "IHC", - "MIBI", - "CODEX", - "Not Applicable", - "H&E", - "GeoMX-DSP", - "CyCIF", - "SABER" - ] - }, - "Image FOV Size Y": {}, - "ImagingChannel Key": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Immersion Type": { - "enum": [ - "Water", - "Oil", - "Air", - "other", - "" - ] - }, - "ImagingLevel2 Key": {}, - "Image Platform Manufacturer": {} - }, - "required": [ - "Filename", - "ImagingLevel3Image_id", - "Component", - "Image Assay Type", - "ImagingChannel Key" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.ImagingLevel3Segments.schema.json b/json_schemas/mc2.ImagingLevel3Segments.schema.json deleted file mode 100644 index b0641608..00000000 --- a/json_schemas/mc2.ImagingLevel3Segments.schema.json +++ /dev/null @@ -1,58 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Image Object Class": { - "enum": [ - "Nucleus", - "Spot", - "Cytoplasm", - "other", - "Whole Cell", - "Plasma Membrane", - "" - ] - }, - "ImagingLevel3Segments_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "ImagingLevel2 Key": {}, - "ImagingLevel3Image Key": {}, - "Image Number of Objects": {}, - "Image Segmentation Data Type": { - "enum": [ - "Polygon", - "Mask", - "Probability Map", - "Point", - "Outline" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Object Class Description": {}, - "Software and Version": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Parameter file": {} - }, - "required": [ - "ImagingLevel3Segments_id", - "Image Segmentation Data Type", - "Component", - "Filename" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.ImagingLevel4.schema.json b/json_schemas/mc2.ImagingLevel4.schema.json deleted file mode 100644 index 2fbbaa73..00000000 --- a/json_schemas/mc2.ImagingLevel4.schema.json +++ /dev/null @@ -1,63 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Image Parameter file": {}, - "Image Number of Features": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Image Number of Objects": {}, - "Image Software": {}, - "ImagingLevel3Image Key": {}, - "Image Object Class": { - "enum": [ - "Whole Cell", - "Plasma Membrane", - "Spot", - "Nucleus", - "Cytoplasm", - "other", - "" - ] - }, - "Image Summary Statistic": { - "enum": [ - "Not Specified", - "Median", - "Mean" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "ImagingLevel3Segments Key": {}, - "ImagingLevel2 Key": {}, - "ImagingLevel4_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Image Number of Features", - "Image Summary Statistic", - "Component", - "ImagingLevel4_id", - "Filename" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.Individual.schema.json b/json_schemas/mc2.Individual.schema.json deleted file mode 100644 index 4d39f6f3..00000000 --- a/json_schemas/mc2.Individual.schema.json +++ /dev/null @@ -1,8057 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Individual Primary Site": { - "enum": [ - "Other and Unspecified Parts of Biliary Tract ICD-O-3", - "Base of the Tongue", - "Lymph Node", - "Gallbladder", - "Nasopharynx", - "Uterus", - "Ureter", - "Ovary", - "Kidney", - "Renal Pelvis", - "Not Reported", - "Breast", - "Gingiva", - "Rectum", - "Colon", - "Other and Unspecified Parts of Tongue ICD-O-3", - "Placenta", - "Other and Ill-Defined Sites within Respiratory System and Intrathoracic Organs ICD-O-3", - "Rectosigmoid Region", - "Testis", - "Palate", - "Adrenal Gland", - "Other and Ill-Defined Sites in Lip; Oral Cavity and Pharynx ICD-O-3", - "Other and Unspecified Major Salivary Glands ICD-O-3", - "Corpus Uteri", - "Vagina", - "Other and Unspecified Parts of Mouth ICD-O-3", - "Other and Unspecified Male Genital Organs ICD-O-3", - "Esophagus", - "Cervix Uteri", - "Other and Unspecified Female Genital Organs ICD-O-3", - "Paranasal Sinus", - "Hypopharynx", - "Floor of Mouth", - "Other Endocrine Glands and Related Structures ICD-O-3", - "Skin", - "Stomach", - "Pyriform Sinus", - "Oropharynx", - "Other and Unspecified Urinary Organs ICD-O-3", - "Brain", - "Bladder", - "Parotid Gland", - "Tonsil", - "Other and Ill Defined Digestive Organs ICD-O-3", - "Trachea", - "Larynx", - "Thyroid Gland", - "unknown", - "Pancreas", - "Thymus Gland", - "Small Intestine", - "Vulva", - "Peritoneum and Retroperitoneum", - "Meninges", - "Other and Ill-Defined Sites ICD-O-3", - "Prostate Gland", - "Lung/Bronchus", - "Lip", - "Limb Skeletal System", - "Penis", - "" - ] - }, - "Individual Recurrence Status": { - "enum": [ - "unknown", - "No", - "Yes", - "Not Reported", - "Not Allowed To Collect", - "" - ] - }, - "Individual Site of Origin": { - "enum": [ - "Main Bronchus", - "Nipple", - "Mandible", - "Lower Third of the Esophagus", - "Posterior Mediastinum", - "Heart", - "Spinal Meninges", - "Uterus", - "Lung", - "Ovary", - "Labium Minus", - "Pineal Gland", - "Posterior Wall of the Nasopharynx", - "Breast", - "External Ear", - "Pituitary Gland", - "Adrenal Cortex", - "Middle Lobe of the Right Lung", - "Body of the Penis", - "Endocrine Gland", - "Gastrointestinal Tract", - "Olfactory Nerve", - "Testis", - "Waldeyer Ring", - "Skin of the Lower Limb and Hip", - "Prepuce", - "Upper Respiratory System", - "Cervical Esophagus", - "Eyelid", - "Supraglottis", - "Buccal Mucosa", - "Tongue", - "Other and Unspecified Male Genital Organs ICD-O-3", - "Spinal Cord", - "Urinary System", - "Mucosa of the Lip", - "Other and Unspecified Female Genital Organs ICD-O-3", - "Parathyroid Gland", - "Ciliary Body", - "Anterior Mediastinum", - "Spleen", - "Anus", - "Urethra", - "Anal Transitional Zone", - "Branchial Cleft Remnant", - "Retina", - "Ectocervix", - "Cerebellum", - "Ethmoid Sinus", - "Intestine", - "Lateral Wall of the Nasopharynx", - "Temporal Lobe", - "Epididymis", - "Extrahepatic Bile Duct", - "Vestibule of Mouth", - "Bladder Trigone", - "Palate", - "Pharynx", - "Abdominal Esophagus", - "Abdomen", - "Glans Penis", - "Ampulla of Vater", - "Meckel Diverticulum", - "Intrahepatic Bile Duct", - "Ureter", - "Ureteric Orifice", - "Kidney", - "Eye", - "Not Reported", - "Intra-Abdominal Lymph Node", - "Duodenum", - "Gingiva", - "Rectum", - "Craniopharyngeal Duct", - "Dome of the Bladder", - "Colon", - "Female Genitalia", - "Cochlear Nerve", - "Hematopoietic System", - "Lymph Node of Inguinal Region or Leg", - "Subglottis", - "Urachus", - "Vallecula", - "Myometrium", - "Bone", - "Posterior Wall of the Oropharynx", - "Cervix Uteri", - "Ileum", - "Orbit", - "Floor of Mouth", - "Fundus Uteri", - "Bladder Neck", - "Pyriform Sinus", - "Oropharynx", - "Brain", - "Adrenal Medulla", - "Parotid Gland", - "Endocervix", - "Peritoneum", - "Skin of the Scalp and Neck", - "Hard Palate", - "Parametrium", - "Middle Ear", - "Thoracic Esophagus", - "Thorax", - "Clitoris", - "Commissure of the Lip", - "Head of the Pancreas", - "Upper Extremity", - "Transverse Colon", - "unknown", - "Occipital Lobe", - "Antrum Pylori", - "Small Intestine", - "Ascending Colon", - "Bone Marrow", - "Meninges", - "Frontal Lobe", - "Ill-Defined Anatomic Site", - "Isthmus Uteri", - "Lower Gingiva", - "Pelvic Lymph Node", - "Body of the Pancreas", - "Superior Wall of the Nasopharynx", - "Posterior Wall of the Bladder", - "Scrotum", - "Pelvis", - "Upper-Outer Quadrant of the Breast", - "Lip", - "Palatine Tonsil", - "Base of the Tongue", - "Lymph Node", - "Laryngeal Cartilage", - "Appendage of the Uterus", - "Vertebral Column", - "Nasopharynx", - "Spermatic Cord", - "Mucosa of the Upper Lip", - "Pleura", - "Liver", - "Nervous System", - "Anterior Surface of the Epiglottis", - "Placenta", - "Rectosigmoid Region", - "Other and Ill-Defined Sites within Respiratory System and Intrathoracic Organs ICD-O-3", - "Anterior Wall of the Nasopharynx", - "Cerebral Hemisphere", - "Lower Extremity", - "Lateral Wall of the Bladder", - "Conjunctiva", - "Labium Majus", - "Parietal Lobe", - "Retromolar Trigone", - "Jejunum", - "Cornea", - "Corpus Uteri", - "Vagina", - "Primary Site Unknown", - "Esophagus", - "Cerebral Meninges", - "Lower Lobe of the Lung", - "Paranasal Sinus", - "Upper Lobe of the Lung", - "Submandibular Gland", - "Middle Third of the Esophagus", - "Skin", - "Cranial Nerve", - "Stomach", - "Descending Colon", - "Male Genitalia", - "Splenic Flexure", - "Lower-Inner Quadrant of the Breast", - "Lesser Curvature of the Stomach", - "Uvula", - "Islet of Langerhans", - "Maxillary Sinus", - "Mediastinum", - "External Lower Lip", - "Appendix", - "External Lip", - "Greater Curvature of the Stomach", - "Brain Ventricle", - "Trachea", - "Endometrium", - "Tail of the Pancreas", - "Upper-Inner Quadrant of the Breast", - "Thymus Gland", - "Skin of the Face", - "Body of Stomach", - "Frontal Sinus", - "Postcricoid Region", - "Brain Stem", - "Sphenoid Sinus", - "Penis", - "Upper Third of the Esophagus", - "Blood", - "Bone of the Extremity", - "Carotid Body", - "Lateral Wall of the Oropharynx", - "Oral Cavity", - "Gallbladder", - "Cauda Equina", - "Renal Pelvis", - "Undescended Testes", - "Fundus of the Stomach", - "Pylorus", - "Autonomic Nervous System", - "Salivary Gland", - "Biliary Tract", - "Other Specified Parts of Pancreas", - "Mucosa of the Lower Lip", - "Skin of the Upper Limb and Shoulder", - "Central Portion of the Breast", - "Intrathoracic Lymph Node", - "Optic Nerve", - "Tonsillar Pillar", - "Reticuloendothelial System", - "Sublingual Salivary Gland", - "Adrenal Gland", - "Anterior Wall of the Bladder", - "Gastric Cardia", - "Head and Neck Lymph Node", - "Sigmoid Colon", - "Upper Gingiva", - "Round Ligament", - "Lower-Outer Quadrant of the Breast", - "Axillary Tail of the Breast", - "Skene Gland", - "Hypopharynx", - "Pancreatic Duct", - "Cecum", - "Skin of the Lip", - "Glottis", - "Fallopian Tube", - "Nasal Cavity", - "Bladder", - "Skin of the Trunk", - "Broad Ligament", - "Choroid", - "Lacrimal Gland", - "Retroperitoneum", - "Axillary Lymph Node", - "Larynx", - "Thyroid Gland", - "External Upper Lip", - "Pancreas", - "Lingual Tonsil", - "Vulva", - "Hepatic Flexure", - "Prostate Gland", - "Posterior Wall of the Hypopharynx", - "Soft Palate", - "Tonsillar Fossa", - "Anal Canal", - "" - ] - }, - "Individual Metastasis Stage": { - "enum": [ - "M1", - "M1c", - "M1a", - "unknown", - "M0", - "M1b", - "cM0 (i+)", - "Not Reported", - "MX", - "" - ] - }, - "Individual Tumor Lymph Node Stage": { - "enum": [ - "N0 (i-)", - "N0 (i+)", - "N2", - "N1bII", - "N1mi", - "N2b", - "N1c", - "Not Reported", - "N2c", - "N0 (mol-)", - "N3", - "N3c", - "N4", - "N2a", - "N1", - "N1b", - "N3a", - "N0 (mol+)", - "N0", - "N1a", - "N1bIV", - "N3b", - "N1bIII", - "N1bI", - "unknown", - "NX", - "" - ] - }, - "Individual Days To Recurrence": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Individual dbGaP Subject Id": {}, - "Individual Tumor Subtype": {}, - "Individual Disease Type": { - "enum": [ - "Germ Cell Neoplasms", - "Nerve Sheath Tumors", - "Soft Tissue Tumors and Sarcomas; NOS", - "Complex Mixed and Stromal Neoplasms", - "Basal Cell Neoplasms", - "Synovial-like Neoplasms", - "Immunoproliferative Diseases", - "Fibromatous Neoplasms", - "Not Reported", - "Myomatous Neoplasms", - "Granular Cell Tumors and Alveolar Soft Part Sarcomas", - "Osseous and Chondromatous Neoplasms", - "Transitional Cell Papillomas and Carcinomas", - "Epithelial Neoplasms; NOS", - "Not Applicable", - "Neuroepitheliomatous Neoplasms", - "Nevi and Melanomas", - "Gliomas", - "Myelodysplastic Syndromes", - "Odontogenic Tumors", - "Miscellaneous Tumors", - "Plasma Cell Neoplasm", - "Myxomatous Neoplasms", - "Cystic; Mucinous and Serous Neoplasms", - "Adenomas and Adenocarcinomas", - "Blood Vessel Tumors", - "Acinar Cell Neoplasms", - "Mast Cell Neoplasm", - "Lymphatic Vessel Tumors", - "Mucoepidermoid Neoplasms", - "Thymic Epithelial Neoplasms", - "Lipomatous Neoplasms", - "Squamous Cell Neoplasms", - "Leukemias", - "Miscellaneous Bone Tumors", - "Giant Cell Tumors", - "Adnexal and Skin Appendage Neoplasms", - "Not Otherwise Specified", - "unknown", - "Fibroepithelial Neoplasms", - "Paragangliomas and Glomus Tumors", - "Neoplasms; NOS", - "Trophoblastic neoplasms", - "Mesothelial Neoplasms", - "Ductal and Lobular Neoplasms", - "Meningiomas", - "" - ] - }, - "Individual Days to Last Known Disease Status": {}, - "Individual Age at Diagnosis": {}, - "Individual Days to Last Followup": {}, - "Study Key": {}, - "Individual Primary Diagnosis": { - "enum": [ - "Adenocarcinoma of anal glands", - "Papillary microcarcinoma", - "Hydatidiform mole; NOS", - "Neurocytoma", - "Diffuse astrocytoma", - "Erythremic myelosis; NOS", - "Splenic lymphoma with villous lymphocytes", - "Adnexal carcinoma", - "Gangliocytoma", - "Malignant midline reticulosis", - "Nonchromaffin paraganglioma; malignant", - "Solid adenocarcinoma with mucin formation", - "Extraosseous plasmacytoma", - "Seminoma; anaplastic", - "Blastoma; NOS", - "Angioma; NOS", - "Periosteal chondroma", - "Infantile fibrosarcoma", - "Intraosseous well differentiated osteosarcoma", - "Hibernoma", - "Wolffian duct carcinoma", - "Pseudomyxoma peritonei with unknown primary site", - "Ductal carcinoma in situ; cribriform type", - "Endometrial stromal nodule", - "Congenital peribronchial myofibroblastic tumor", - "Mucinous adenofibroma of borderline malignancy", - "Unclassified tumor; uncertain whether benign or malignant", - "Fetal fat cell lipoma", - "Acute lymphoblastic leukemia-lymphoma; NOS", - "Trichofolliculoma", - "Mixed medullary-follicular carcinoma", - "Retinoblastoma; differentiated", - "Malignant cystic nephroma", - "Fetal lipomatosis", - "Chronic myeloproliferative disease; NOS", - "Malignant lymphoma; nodular; NOS", - "Monocytic leukemia; NOS", - "Infiltrating ductular carcinoma", - "Mesothelioma; NOS", - "Malignant lymphoma; lymphocytic; well differentiated; diffuse", - "Epidermoid carcinoma in situ with questionable stromal invasion", - "Jugular paraganglioma", - "Langerhans cell histiocytosis; generalized", - "Cartilaginous exostosis", - "Dermoid cyst with malignant transformation", - "Monoclonal gammopathy of undetermined significance", - "Adult cystic teratoma", - "FAB M6", - "Papillary carcinoma; columnar cell", - "Extra-adrenal paraganglioma; NOS", - "Lobular and ductal carcinoma", - "Chronic neutrophilic leukemia", - "Granular cell myoblastoma; malignant", - "Tumor; NOS", - "Fibrous mesothelioma; malignant", - "Tubular adenocarcinoma", - "Myofibroblastic tumor; NOS", - "Gelatinous carcinoma", - "Polyembryoma", - "Olfactory neurocytoma", - "Small cell carcinoma; intermediate cell", - "Acute myeloid leukemia; M6 type", - "Non-invasive low grade serous carcinoma", - "Epithelioid malignant peripheral nerve sheath tumor", - "Acoustic neuroma", - "Hepatocellular carcinoma; spindle cell variant", - "Malignant lymphoma; lymphoplasmacytoid", - "Acute myelomonocytic leukemia", - "Gangliocytic paraganglioma", - "Carcinoma in situ in a polyp; NOS", - "Florid osseous dysplasia", - "Meningeal melanoma", - "Adenocarcinoma admixed with neuroendocrine carcinoma", - "Vipoma; malignant", - "Sclerosing rhabdomyosarcoma", - "Mu heavy chain disease", - "Acinar carcinoma", - "Hepatocarcinoma", - "Carcinoma; NOS", - "Papillary glioneuronal tumor", - "Papillary and follicular carcinoma", - "Epithelioid mesothelioma; NOS", - "Infiltrating lobular mixed with other types of carcinoma", - "Mucin-producing carcinoma", - "Primary cutaneous anaplastic large cell lymphoma", - "EBV positive diffuse large B-cell lymphoma of the elderly", - "Aleukemic myelogenous leukemia", - "Desmoplastic infantile ganglioglioma", - "Metastatic signet ring cell carcinoma", - "Squamous cell carcinoma; acantholytic", - "Chromophobe cell renal carcinoma", - "Clear cell cystadenocarcinofibroma", - "Jugulotympanic paraganglioma", - "Juvenile histiocytoma", - "Spindle epithelial tumor with thymus-like element", - "Intraductal papillary-mucinous carcinoma; non-invasive", - "Serotonin producing carcinoid", - "Malignant lymphoma; lymphoblastic; NOS", - "Paget disease and infiltrating duct carcinoma of breast", - "Nevus; NOS", - "Cementoblastoma; benign", - "Malignant lymphoma; large cell; cleaved; NOS", - "Cylindrical cell carcinoma", - "Chronic monocytic leukemia", - "Malignant tumor; spindle cell type", - "Mast cell sarcoma", - "Osteoblastic sarcoma", - "Myelocytic leukemia; NOS", - "Blue nevus; NOS", - "Dedifferentiated chordoma", - "Sessile serrated polyp", - "Acute lymphoblastic leukemia; NOS", - "Colloid adenocarcinoma", - "Adrenal cortical carcinoma", - "Cavernous hemangioma", - "Flat adenoma", - "Intimal sarcoma", - "Acute megakaryoblastic leukaemia", - "Intracystic papillary neoplasm with high grade intraepithelial neoplasia", - "Malignant myoepithelioma", - "Myxoliposarcoma", - "Porocarcinoma", - "Malignant lymphoma; small lymphocytic; NOS", - "Retroperitoneal fibromatosis", - "AIN III", - "Embryonal rhabdomyosarcoma; NOS", - "Cin III; NOS", - "Pneumoblastoma", - "Adnexal tumor; benign", - "Combined hepatocellular carcinoma and cholangiocarcinoma", - "Large cell medulloblastoma", - "Mammary carcinoma; in situ", - "Osteofibrosarcoma", - "Serous adenocarcinoma; NOS", - "Lipoleiomyoma", - "Mixed phenotype acute leukemia; T/myeloid; NOS", - "Leydig cell tumor; malignant", - "Thymoma; atypical; NOS", - "Dentinoma", - "Dysgerminoma", - "Diffuse midline glioma; H3 K27M-mutant", - "Malignant schwannoma; NOS", - "Diffuse meningiomatosis", - "Infiltrating duct and lobular carcinoma in situ", - "Serous cystadenofibroma; NOS", - "Infiltrating lobular carcinoma and ductal carcinoma in situ", - "Medullary carcinoma; NOS", - "Refractory anemia with ringed sideroblasts", - "Syringomatous carcinoma", - "Androblastoma; malignant", - "Brenner tumor; borderline malignancy", - "Granulosa cell tumor; adult type", - "Tanycytic ependymoma", - "Carcinoma in adenomatous polyp", - "Basophil adenocarcinoma", - "Serous tumor; NOS; of low malignant potential", - "Somatostatin cell tumor; malignant", - "Angioendotheliomatosis", - "Pancreatic endocrine tumor; NOS", - "Pleomorphic rhabdomyosarcoma; NOS", - "Malignant fibrous histiocytoma", - "Endometrioid cystadenoma; NOS", - "Papillomatosis; NOS", - "Gastrointestinal pacemaker cell tumor", - "Congenital generalized fibromatosis", - "Malignant lymphoma; large B-cell; diffuse; NOS", - "Acquired cystic disease-associated renal cell carcinoma (RCC)", - "Biliary papillomatosis", - "Endometrioid adenoma; borderline malignancy", - "Heavy chain disease; NOS", - "Acute lymphocytic leukemia", - "Mixed adenocarcinoma and epidermoid carcinoma", - "Solid papillary carcinoma in situ", - "Gliomatosis cerebri", - "Letterer-Siwe disease", - "Ganglioglioma; NOS", - "Endometrioid cystadenoma; borderline malignancy", - "Ductal carcinoma; NOS", - "Germ cell tumors with associated hematological malignancy", - "Hemangioblastic meningioma", - "PNET; NOS", - "Low-grade fibromyxoid sarcoma", - "Secretory meningioma", - "Neuronevus", - "Urticaria pigmentosa", - "Signet ring cell adenocarcinoma", - "Serous cystadenofibroma of borderline malignancy", - "Acute erythremic myelosis", - "EC cell carcinoid", - "NUT midline carcinoma", - "Alveolar cell carcinoma", - "Mixed pancreatic endocrine and exocrine tumor; malignant", - "Mucous carcinoma", - "Diffuse large B-cell lymphoma; NOS", - "Intravascular leiomyomatosis", - "Therapy-related acute myeloid leukemia; epipodophyllotoxin-related", - "Hurthle cell carcinoma", - "Lymphosarcoma cell leukemia", - "Well differentiated papillary mesothelioma; benign", - "Anaplastic medulloblastoma", - "Transitional cell carcinoma in situ", - "Fibrofolliculoma", - "Adenocarcinoma in situ; NOS", - "Bile duct cystadenoma", - "Histiocytic medullary reticulosis", - "Plexiform neurofibroma", - "Periosteal sarcoma; NOS", - "Esophageal glandular dysplasia (intraepithelial neoplasia); high grade", - "Immunocytoma", - "Pseudomyxoma peritonei", - "Acute panmyelosis; NOS", - "Fibro-osteoma", - "Invasive hydatidiform mole", - "Clear cell adenofibroma", - "Syringofibroadenoma", - "Malignant lymphoma; mixed small cleaved and large cell; follicular", - "Clear cell adenoma", - "Lentigo maligna", - "Desmoplastic infantile astrocytoma", - "Chondromyxoid fibroma", - "Ossifying fibromyxoid tumor; malignant", - "Epithelioma adenoides cysticum", - "Intracortical osteosarcoma", - "Malignant lymphoma; centroblastic; NOS", - "Lymphocytic leukemia; NOS", - "Myofibroblastic tumor; peribronchial", - "Adenomatous polyposis coli", - "Tubulopapillary adenocarcinoma", - "Hygroma; NOS", - "Spindle cell melanoma; type B", - "Masculinovoblastoma", - "Arrhenoblastoma; NOS", - "Hodgkin disease; lymphocyte predominance; NOS", - "Therapy-related myelodysplastic syndrome; epipodophyllotoxin-related", - "Carcinoma with osteoclast-like giant cells", - "Interstitial cell tumor; NOS", - "Desmoplastic fibroma", - "Malignant lymphoma; small cell diffuse", - "Intracystic papillary tumor with high grade dysplasia", - "Teratoma; malignant; NOS", - "Neuroastrocytoma", - "Superficial well differentiated liposarcoma", - "Basal cell carcinoma; NOS", - "Papillary squamous cell carcinoma", - "Acute leukemia; NOS", - "M6A", - "Pseudomucinous adenocarcinoma", - "Rosette-forming glioneuronal tumor", - "Spiradenoma; NOS", - "Neoplasm; NOS", - "Plasmacytic leukemia", - "Ependymoma; NOS", - "Infiltrating duct mixed with other types of carcinoma", - "Urothelial carcinoma with squamous differentiation", - "Dermoid; NOS", - "Chromaffin tumor", - "Vascular leiomyoma", - "Malignant lymphoma; small lymphocytic; diffuse", - "Malignant lymphoma; large cleaved cell; follicular", - "Multicystic mesothelioma; benign", - "Round cell sarcoma", - "Solitary myeloma", - "Acute myeloid leukemia with mutated CEBPA", - "Immature teratoma; NOS", - "Pigmented adenoma", - "Squamous intraepithelial neoplasia; low grade", - "Clear cell meningioma", - "Cystosarcoma phyllodes; NOS", - "Spindle cell melanoma; NOS", - "Acute non-lymphocytic leukemia", - "Fibromatosis-like metaplastic carcinoma", - "Acute myeloid leukemia with prior myelodysplastic syndrome", - "Intraductal carcinoma; noninfiltrating; NOS", - "Carcinoma showing thymus-like element", - "Balloon cell melanoma", - "Diffuse astrocytoma; low grade", - "Mixed islet cell and exocrine adenocarcinoma", - "Adenocarcinoma; endocervical type", - "Chorioepithelioma", - "Granulosa cell tumor; malignant", - "Small cell osteosarcoma", - "Fibroxanthoma; malignant", - "Angiokeratoma", - "T-zone lymphoma", - "Transient abnormal myelopoiesis", - "Adenocarcinoma with cartilaginous metaplasia", - "Ganglioneuroma", - "Endometrioid adenocarcinoma; NOS", - "Glioblastoma; IDH-mutant", - "Metaplastic carcinoma of no special type", - "Mixed carcinoid-adenocarcinoma", - "Malignant melanoma in Hutchinson melanotic freckle", - "Wilms tumor", - "Adult teratoma; NOS", - "Warthin tumor", - "Intraductal papillary neoplasm with associated invasive carcinoma", - "Intraductal papillary-mucinous neoplasm with moderate dysplasia", - "Gemistocytic astrocytoma", - "Precursor cell lymphoblastic leukemia; not phenotyped", - "Skin appendage carcinoma", - "Spindle cell melanoma; type A", - "Angiosarcoma", - "Malignant lymphoma; large cell; immunoblastic", - "Oncocytic carcinoma", - "Small cell carcinoma; NOS", - "Systemic tissue mast cell disease", - "Cystadenoma; NOS", - "Bronchial adenoma; carcinoid", - "Noninfiltrating intraductal papillary carcinoma", - "Adenocarcinoma in tubular adenoma", - "Superficial spreading melanoma", - "Transitional cell carcinoma; spindle cell", - "Carcinoma in a polyp; NOS", - "Hemangiopericytoma; benign", - "Primary amyloidosis", - "Malignant eccrine spiradenoma", - "Clear cell hidradenoma", - "Thymoma; epithelial; malignant", - "Bronchiolo-alveolar carcinoma; type II pneumocyte and goblet cell type", - "Mucoepidermoid tumor", - "Melanotic psammomatous MPNST", - "Odontogenic carcinosarcoma", - "Eccrine dermal cylindroma", - "Anaplastic large B-cell lymphoma", - "Primary cutaneous CD30+ large T-cell lymphoma", - "Serous cystadenocarcinoma; NOS", - "Malignant lymphoma; small cleaved cell; NOS", - "Monstrocellular sarcoma", - "Mesenchymoma; benign", - "Adenocarcinoma of rete ovarii", - "Meningothelial sarcoma", - "Neuroepithelioma; NOS", - "Minimally invasive adenocarcinoma; NOS", - "Schneiderian papilloma; inverted", - "Round cell carcinoma", - "Plexiform hemangioma", - "Lymphoproliferative disorder; NOS", - "Myelodysplastic/myeloproliferative neoplasm; unclassifiable", - "Infiltrating lobular carcinoma; NOS", - "Pilomatricoma; NOS", - "Chronic granulocytic leukemia; t(9;22)(q34;q11)", - "Basal cell adenocarcinoma", - "Stromal endometriosis", - "Precursor B-cell lymphoblastic leukemia", - "Pseudomucinous cystadenoma; borderline malignancy", - "Fibroliposarcoma", - "Sarcomatoid carcinoma", - "Malignant lymphoma; mixed cell type; nodular", - "Mesenchymal chondrosarcoma", - "Essential hemorrhagic thrombocythaemia", - "Dermatofibroma lenticulare", - "Intraductal papillary tumor with high grade dysplasia", - "Synovioma; malignant", - "Sclerosing hemangioma", - "Follicular adenoma", - "RAEB I", - "Mesoblastic nephroma", - "Granular cell tumor of the sellar region", - "Malignant lymphoma; mixed cell type; diffuse", - "Compound nevus", - "Endometrioid adenocarcinoma; ciliated cell variant", - "Neurofibrosarcoma", - "Granulosa cell tumor; sarcomatoid", - "Bronchiolo-alveolar adenocarcinoma; NOS", - "FAB MO", - "Pilomatricoma; malignant", - "SETTLE", - "Peripheral T-cell lymphoma; large cell", - "Preleukemic syndrome", - "Medulloepithelioma; benign", - "Superficial spreading adenocarcinoma", - "Lymphangioendothelioma; NOS", - "Leiomyomatosis; NOS", - "Plasma cell myeloma", - "Thymoma; cortical; malignant", - "Leiomyoblastoma", - "Alveolar carcinoma", - "Hodgkin lymphoma; NOS", - "Hodgkin sarcoma", - "Aleukemic granulocytic leukemia", - "Fibrosarcomatous dermatofibrosarcoma protuberans", - "Mixed mesenchymal tumor", - "Trabecular adenocarcinoma", - "c-ALL", - "B cell lymphoma; NOS", - "Stromal tumor with minor sex cord elements", - "Sebaceous carcinoma", - "Embryonal adenoma", - "Sebaceous adenoma", - "Bronchial-associated lymphoid tissue lymphoma", - "Pigmented nevus; NOS", - "Thymoma; organoid; NOS", - "Giant cell tumor of bone; malignant", - "Bronchio-alveolar carcinoma; mucinous", - "Waldenstrom macroglobulinemia", - "Chorioadenoma destruens", - "Malignant lymphoma; large B-cell; diffuse; immunoblastic; NOS", - "Tubulo-papillary adenoma", - "Intratubular malignant germ cells", - "Infiltrating duct and cribriform carcinoma", - "unknown", - "Somatostatin cell tumor; NOS", - "Synovial sarcoma; biphasic", - "Malignant lymphoma; diffuse; NOS", - "Cancer", - "Esophageal intraepithelial neoplasia; high grade", - "Myofibromatosis", - "Clear cell carcinoma", - "Malignant lymphoma; lymphocytic; nodular; NOS", - "Skin appendage adenoma", - "Pilomatrixoma; malignant", - "Mixed teratoma and seminoma", - "Periapical cemental dysplasia", - "Undifferentiated high-grade pleomorphic sarcoma", - "Squamotransitional cell carcinoma", - "Follicular lymphoma; grade 2", - "Intracystic papillary adenocarcinoma", - "Malignant tumor; small cell type", - "Ependymoma; anaplastic", - "Capillary hemangioma", - "Acute promyelocytic leukemia; NOS", - "Malignant lymphoma; undifferentiated cell type; NOS", - "Intraepidermal nevus", - "Immunoblastic sarcoma", - "Atypical polypoid adenomyoma", - "Giant cell fibroblastoma", - "Refractory anemia without sideroblasts", - "Rhabdomyosarcoma with ganglionic differentiation", - "Thymic carcinoma; NOS", - "Hodgkin disease; nodular sclerosis; mixed cellularity", - "Liver cell carcinoma", - "Tumorlet; NOS", - "Acute myeloid leukemia; inv(16)(p13;q22)", - "Struma ovarii; malignant", - "Embryonal rhabdomyosarcoma; pleomorphic", - "Epithelioid glioblastoma", - "Eccrine adenocarcinoma", - "Adamantinoma; NOS", - "Squamous cell carcinoma; sarcomatoid", - "Hepatocellular carcinoma; sarcomatoid", - "Oncocytoma", - "Neurotropic melanoma; malignant", - "Follicular lymphoma; grade 1", - "Tumor cells; benign", - "Diktyoma; malignant", - "Combined small cell-adenocarcinoma", - "Columnar cell papilloma", - "Malignant lymphoma; lymphocytic; poorly differentiated; diffuse", - "Mixed phenotype acute leukemia with t(9;22)(q34;q11.2); BCR-ABL1", - "Malignant lymphoma; lymphocytic; intermediate differentiation; nodular", - "Tumor cells; NOS", - "Mucinous cystic tumor with an associated invasive carcinoma", - "Cerebellar sarcoma; NOS", - "Mixed adenoneuroendocrine carcinoma", - "Atypical chronic myeloid leukemia; Philadelphia chromosome (Ph1) negative", - "Primitive polar spongioblastoma", - "Squamous cell papilloma; NOS", - "Endotheliomatous meningioma", - "Melanotic schwannoma", - "NK-cell large granular lymphocytic leukemia", - "Adult T-cell lymphoma/leukemia", - "Granulosa cell-theca cell tumor", - "Non-lymphocytic leukemia; NOS", - "Papillary urothelial neoplasm of low malignant potential", - "Gliofibroma", - "Embryonal tumor with multilayered rosettes C19MC-altered", - "Hemangiopericytoma; NOS", - "Serous carcinoma; NOS", - "Solid and papillary epithelial neoplasm", - "Syringocystadenoma papilliferum", - "Esophageal squamous intraepithelial neoplasia (dysplasia); low grade", - "Mesodermal mixed tumor", - "LCIS; NOS", - "Mixed squamous cell and glandular papilloma", - "Reticulum cell sarcoma; diffuse", - "Lymphomatoid papulosis", - "Neoplasm; malignant; uncertain whether primary or metastatic", - "Proliferative polycythemia", - "Primary myelofibrosis", - "Cervical intraepithelial neoplasia; grade III", - "Pilomatrix carcinoma", - "Pancreatobiliary-type carcinoma", - "Meningeal sarcoma", - "Cellular angiofibroma", - "Melanotic medulloblastoma", - "Cribriform carcinoma; NOS", - "Compound odontoma", - "Angiomatous meningioma", - "Poorly cohesive carcinoma", - "Arrhenoblastoma; benign", - "Angiomyxoma", - "Hodgkin lymphoma; nodular sclerosis; NOS", - "Ganglioneuromatosis", - "Carcinoma simplex", - "Acute myeloid leukemia with abnormal marrow eosinophils (includes all variants)", - "Adenocarcinoma with osseous metaplasia", - "Mucinous cystic tumor with high-grade dysplasia", - "Aleukemic monocytic leukemia", - "Lipoadenoma", - "Refractory anemia with excess blasts", - "Extracutaneous mastocytoma", - "Unclassified tumor; malignant", - "Papillary serous adenocarcinoma", - "Neurofibromatosis; NOS", - "Invasive mammary carcinoma", - "Mesenchymal tumor; malignant", - "Adenoid cystic carcinoma", - "Nodular melanoma", - "Adrenal cortical tumor; benign", - "Goblet cell carcinoid", - "Carcinoma; metastatic; NOS", - "Glassy cell carcinoma", - "Midline carcinoma of children and young adults with NUT rearrangement", - "Adenocarcinoma in situ; mucinous", - "Mucosal-associated lymphoid tissue lymphoma", - "Malignancy", - "Composite Hodgkin and non-Hodgkin lymphoma", - "Intraneural perineurioma", - "Lymphangiosarcoma", - "Angioblastic meningioma", - "Desmoplastic nodular medulloblastoma", - "Adrenal rest tumor", - "Ecchondrosis", - "Lipid-rich urothelial carcinoma", - "Combined small cell-squamous cell carcinoma", - "Neurogenic sarcoma", - "Papillary cystadenocarcinoma; NOS", - "Pheochromocytoma; NOS", - "Neoplasm; metastatic", - "Clear cell odontogenic carcinoma", - "Choroid plexus papilloma; NOS", - "Combined large cell neuroendocrine carcinoma", - "Endometrioid tumor of low malignant potential", - "Malignant lymphoma; centroblasticcentrocytic; diffuse", - "Low-grade intramedullary osteosarcoma", - "Pheochromoblastoma", - "Embryonal teratoma", - "Sezary syndrome", - "Hepatoblastoma", - "Granular cell adenocarcinoma", - "Thymoma; predominantly cortical; NOS", - "Acute lymphoblastic leukemia; L2 type; NOS", - "Squamous cell carcinoma; spindle cell", - "Lipoblastoma", - "Central neurocytoma", - "Intraductal tubular-papillary neoplasm; low grade", - "Idiopathic hemorrhagic thrombocythaemia", - "Mesothelioma; biphasic; malignant", - "Benign fibrous histiocytoma", - "Ameloblastic fibro-odontoma", - "High-grade serous carcinoma", - "Invasive mucinous adenocarcinoma", - "Chondromatous giant cell tumor", - "Adrenal cortical adenoma; glomerulosa cell", - "Squamous cell carcinoma; clear cell type", - "Mucinous cystadenofibroma; NOS", - "Nephroblastoma; NOS", - "Acute myelosclerosis; NOS", - "Tumor; secondary", - "NUT carcinoma", - "Carcinoma; undifferentiated; NOS", - "Papillary mucinous cystadenocarcinoma", - "Wolffian duct adenoma", - "Intraductal papillary tumor with high grade intraepithelial neoplasia", - "Bizarre leiomyoma", - "Mucinous adenocarcinoma", - "Mucinous cystadenocarcinofibroma", - "Malignant melanoma; regressing", - "Papillary syringocystadenoma", - "Squamous cell carcinoma; adenoid", - "Neuroendocrine carcinoma; well-differentiated", - "Olfactory neuroblastoma", - "Follicular lymphoma; grade 3B", - "Solid pseudopapillary tumor", - "Epithelial tumor; benign", - "Ameloblastoma; NOS", - "Teratocarcinoma", - "Franklin disease", - "Refractory anemia with excess blasts in transformation", - "Papillary cystadenoma lymphomatosum", - "Hepatocellular carcinoma; clear cell type", - "Acute myloid leukemia; 11q23 abnormalities", - "Mucinous cystic neoplasm with high-grade dysplasia", - "Polygonal cell carcinoma", - "Malignant lymphoma; noncleaved; NOS", - "RARS", - "Rhabdosarcoma", - "Epithelial ependymoma", - "Micropapillary serous carcinoma", - "Adenoma of nipple", - "Multiple hemorrhagic sarcoma", - "True histiocytic lymphoma", - "ACTH-producing tumor", - "Renal carcinoma; collecting duct type", - "Sclerosing sweat duct carcinoma", - "Myofibroblastoma", - "Mucosal lentiginous melanoma", - "Undifferentiated spindle cell sarcoma", - "Inflammatory adenocarcinoma", - "Hairy cell leukaemia variant", - "Atypical hyperplasia/Endometrioid intraepithelial neoplasm", - "Mucinous cystic neoplasm with intermediate-grade dysplasia", - "Chief cell adenoma", - "Acute myelocytic leukemia", - "Precursor cell lymphoblastic leukemia; NOS", - "Mixed ductal-endocrine carcinoma", - "PIN III", - "Pituitary carcinoma; NOS", - "Undifferentiated epithelioid sarcoma", - "Intraductal papilloma with ductal carcinoma in situ", - "Malignant perivascular epithelial cell tumor", - "Astrocytoma; low grade", - "Stromal sarcoma; NOS", - "Neurinoma", - "Schwannoma; NOS", - "Follicular carcinoma; well differentiated", - "Peripheral primitive neuroectodermal tumor; NOS", - "Thymoma; benign", - "Neurilemosarcoma", - "Clear cell sarcoma of kidney", - "Sex cord tumor with annular tubules", - "Warty carcinoma", - "Adenocarcinoma in tubolovillous adenoma", - "Adenocarcinoma; intestinal type", - "Malignant lymphoma; small noncleaved; Burkitt type", - "Malignant lymphoma; centrocytic", - "Metaplastic carcinoma with other types mesenchymal differentiation", - "Medulloepithelioma; NOS", - "Water-clear cell carcinoma", - "Teratoma; NOS", - "Malignant mucinous cystadenofibroma", - "Stromal tumor; NOS", - "Follicular adenocarcinoma; trabecular", - "Hodgkin disease; nodular sclerosis; lymphocyte predominance", - "Mixed phenotype acute leukemia; B/myeloid; NOS", - "Renomedullary interstitial cell tumor", - "Lymphoid leukemia; NOS", - "Minimally invasive adenocarcinoma; mucinous", - "NK/T-cell lymphoma; nasal and nasal-type", - "Giant cell tumor of soft parts; NOS", - "Malignant teratoma; anaplastic", - "Cribriform comedo-type carcinoma", - "Lymphosarcoma; NOS", - "Testicular stromal tumor", - "Malignant peripheral nerve sheath tumor", - "Acute granulocytic leukemia", - "Ductal carcinoma in situ; papillary", - "Infiltrating duct and mucinous carcinoma", - "Somatostatinoma; malignant", - "Malignant lymphoma; noncleaved cell; follicular; NOS", - "Chronic idiopathic myelofibrosis", - "Mature T-cell lymphoma; NOS", - "Langerhans cell histiocytosis; mono-ostotic", - "Ganglioglioma; anaplastic", - "Fibroepithelioma of Pinkus type", - "Basal cell carcinoma; morpheic", - "Acute myeloid leukemia without maturation", - "Refractory thrombocytopenia", - "Classical Hodgkin lymphoma; lymphocyte depletion; NOS", - "Scirrhous adenocarcinoma", - "Insulinoma; malignant", - "Spongioblastoma multiforme", - "Biliary intraepithelial neoplasia; low grade", - "Subacute myelogenous leukemia", - "Eccrine papillary adenoma", - "Embryonal tumor with multilayered rosettes; NOS", - "Malignant fibrous histiocytoma (MFH) of bone", - "Tubular adenoma; NOS", - "Melanotic neurofibroma", - "Ectopic hamartomatous thymoma", - "Unclassified tumor; malignant; uncertain whether primary or metastatic", - "Non-invasive encapsulated follicular variant of papillary thyroid carcinoma (non-invasive EFVPTC)", - "Thymoma; spindle cell; malignant", - "Primitive neuroectodermal tumor; NOS", - "Hepatoid carcinoma", - "Luteoma; NOS", - "Nonchromaffin paraganglioma; NOS", - "PTLD; NOS", - "T-cell large granular lymphocytic leukemia", - "Macrofollicular adenoma", - "Endometrial stromal sarcoma; high grade", - "Mucocarcinoid tumor", - "Pheochromocytoma; malignant", - "Thymoma; mixed type; NOS", - "Invasive lobular carcinoma; alveolar type", - "Anaplastic large cell lymphoma; ALK negative", - "Primary cutaneous neuroendocrine carcinoma", - "Clear cell cystadenoma", - "Hypernephroid tumor", - "Hodgkin granuloma", - "Scirrhous carcinoma", - "Chondroid syringoma", - "Chronic myeloproliferative disorder", - "Malignant lymphoma; non-cleaved cell; NOS", - "Hemangiopericytoma; malignant", - "G cell tumor; malignant", - "Interstitial cell tumor; benign", - "Pulmonary artery intimal sarcoma", - "Sertoli-Leydig cell tumor; poorly differentiated", - "Nesidioblastoma", - "Cystic astrocytoma", - "Adenocarcinoma in multiple adenomatous polyps", - "Dendritic cell sarcoma; NOS", - "Chordoma; NOS", - "Malignant lymphoma; lymphoplasmacytic", - "Papillary mucinous tumor of low malignant potential", - "Piloid astrocytoma", - "Oxyphilic adenoma", - "Acute myeloid leukemia; AML1(CBF-alpha)/ETO", - "Bronchiolo-alveolar carcinoma; goblet cell type", - "Acute myeloid leukemia with maturation", - "Fetal rhabdomyoma", - "Acute promyelocytic leukaemia; t(15;17)(q22;q11-12)", - "Mixed cell adenocarcinoma", - "Acinar cell tumor", - "Myoepithelial carcinoma", - "Keratotoc papilloma", - "Brenner tumor; proliferating", - "Primary cutaneous follicle centre lymphoma", - "Mediterranean lymphoma", - "Adrenal cortical adenoma; compact cell", - "Carcinoma with apocrine metaplasia", - "Serous cystadenoma; borderline malignancy", - "Clear cell (glycogen-rich) urothelial carcinoma", - "Fibrous astrocytoma", - "Acinic cell adenoma", - "Basal cell carcinoma; micronodular", - "Deep histiocytoma", - "Eosinophilic leukemia", - "Malignant lymphoma; large B-cell; diffuse; centroblastic; NOS", - "Infiltrating basal cell carcinoma; NOS", - "Malignant tumor; giant cell type", - "Synovial sarcoma; monophasic fibrous", - "Endometrioid adenofibroma; borderline malignancy", - "Acute monoblastic and monocytic leukemia", - "Reticulosarcoma; diffuse", - "Nested urothelial carcinoma", - "Hodgkin lymphoma; nodular sclerosis; cellular phase", - "Salivary duct carcinoma", - "Giant cell glioblastoma", - "Ameloblastic fibro-odontosarcoma", - "Dabska tumor", - "Papillary epidermoid carcinoma", - "Paraganglioma; malignant", - "Polyvesicular vitelline tumor", - "Lobular adenocarcinoma", - "Cellular schwannoma", - "Dermatofibroma; NOS", - "Mixed acinar-ductal carcinoma", - "Rodent ulcer", - "Infiltrating duct and tubular carcinoma", - "Chronic erythremia", - "Carotid body paraganglioma", - "Pigmented spindle cell nevus of Reed", - "Fibrous histiocytoma of tendon sheath", - "Undifferentiated pleomorphic sarcoma", - "Erythroleukemia", - "Angioimmunoblastic lymphoma", - "Metaplastic carcinoma; NOS", - "Adenocarcinoma in situ in polypoid adenoma", - "Pancreatic endocrine tumor; benign", - "Papilloma of bladder", - "Myxoid fibroma", - "Mixed liposarcoma", - "Central primitive neuroectodermal tumor; NOS", - "Renal cell carcinoma; sarcomatoid", - "Choroid plexus carcinoma", - "Rhabdomyoma; NOS", - "Low grade adenosquamous carcinoma", - "Papillary transitional cell carcinoma; non-invasive", - "Intraductal papilloma with lobular carcinoma in situ", - "Multiple myeloma", - "Clear cell chondrosarcoma", - "Intraductal papillary mucinous neoplasm (IPMN) with an associated invasive carcinoma", - "Ganglioneuroblastoma", - "Racemose hemangioma", - "Conventional central osteosarcoma", - "Bile duct adenoma", - "Pacinian tumor", - "B lymphoblastic leukemia/lymphoma with t(5;14)(q31;q32); IL3-IGH", - "Chronic lymphatic leukemia", - "Intraductal papillary-mucinous neoplasm with low grade dysplasia", - "Placental site trophoblastic tumor", - "Langerhans cell granulomatosis", - "Atypical proliferative papillary serous tumor", - "Islet cell tumor; NOS", - "Steroid cell tumor; malignant", - "Choroid plexus papilloma; malignant", - "Fibroxanthoma; NOS", - "Myeloproliferative neoplasm; NOS", - "Carcinoid tumor; NOS; of appendix", - "Squamous cell carcinoma in situ with questionable stromal invasion", - "Thymoma; epithelial; NOS", - "Intestinal-type adenocarcinoma", - "Refractory cytopenia of childhood", - "Squamous cell papilloma; inverted", - "Microfollicular adenoma; NOS", - "Infiltrating duct and colloid carcinoma", - "Carcinofibroma", - "Liposarcoma; NOS", - "Testicular adenoma", - "Extra-abdominal desmoid", - "Papillotubular adenoma", - "Gastrointestinal stromal tumor; benign", - "Islet cell carcinoma", - "Di Guglielmo disease", - "Squamous cell carcinoma; HPV-positive", - "Osteochondromatosis; NOS", - "Thymoma; medullary; NOS", - "Villoglandular carcinoma", - "Eccrine spiradenoma", - "Sinonasal papilloma; fungiform", - "Hepatosplenic T-cell lymphoma", - "Acute lymphatic leukemia", - "Source Data Not Available", - "Tumor cells; malignant", - "Pleomorphic xanthoastrocytoma", - "Hairy cell leukemia", - "Intraductal papillary-mucinous carcinoma; invasive", - "Myxofibroma; NOS", - "Prolymphocytic leukemia; B-cell type", - "Infantile hemangioma", - "Adenocarcinoma; cylindroid", - "Myosarcoma", - "Oligodendroblastoma", - "Pancreatic endocrine tumor; malignant", - "Glycogenic rhabdomyoma", - "Angiocentric immunoproliferative lesion", - "Mantle cell lymphoma (Includes all variants blastic; pleomorphic; small cell)", - "Lepidic adenocarcinoma", - "Cystic tumor of atrio-ventricular node", - "Lymphangiomyomatosis", - "Hemangioendothelioma; NOS", - "Chronic myelomonocytic leukemia; Type II", - "Thymoma; lymphocyte-rich; malignant", - "Mixed invasive mucinous and non-mucinous adenocarcinoma", - "Skin-associated lymphoid tissue lymphoma", - "Epidermoid carcinoma; spindle cell", - "Recklinghausen disease", - "MPNST with rhabdomyoblastic differentiation", - "Germ cell tumor; nonseminomatous", - "Pseudosarcomatous carcinoma", - "Primary cutaneous CD8-positive aggressive epidermotropic cytotoxic T-cell lymphoma", - "Acute erythroid leukaemia", - "Melanoameloblastoma", - "Desmoplastic small round cell tumor", - "Malignant melanoma in congenital melanocytic nevus", - "Embryonal adenocarcinoma", - "Clear cell sarcoma; of tendons and aponeuroses", - "Pancreatic endocrine tumor; nonfunctioning", - "Acutemyeloidleukemia;t(15", - "Well differentiated thymic carcinoma", - "Lipid cell tumor of ovary", - "Glioneuroma", - "Adult rhabdomyoma", - "Follicular adenocarcinoma; well differentiated", - "Plasmablastic lymphoma", - "Mucin-secreting adenocarcinoma", - "Esthesioneurocytoma", - "Malignant rhabdoid tumor", - "Adenomyoepithelioma", - "Chemodectoma", - "Malignant lymphoma; small B lymphocytic; NOS", - "Fascial fibroma", - "Cystadenofibroma; NOS", - "Lymphoepithelioid lymphoma", - "Spongioblastoma polare", - "Invasive micropapillary carcinoma", - "Solitary fibrous tumor; malignant", - "Mesonephric adenocarcinoma", - "Adrenal medullary paraganglioma; malignant", - "Anaplastic large cell lymphoma; ALK positive", - "Glomus tumor; malignant", - "Mesonephroma; NOS", - "MANEC", - "Trichodiscoma", - "Matrical carcinoma", - "Clear cell adenocarcinoma; NOS", - "Adenocarcinoma in adenomatous polyposis coli", - "Hodgkin lymphoma; nodular sclerosis; grade 1", - "Squamous cell carcinoma in situ; NOS", - "Low grade appendiceal mucinous neoplasm", - "Trabecular adenoma", - "CASTLE", - "Diffuse intraductal papillomatosis", - "Intracystic papillary adenoma", - "Hodgkin lymphoma; nodular lymphocyte predominance", - "Bronchiolo-alveolar carcinoma; type II pneumocyte", - "Reninoma", - "Alpha cell tumor; malignant", - "Malignant lymphoma; lymphocytic; diffuse; NOS", - "Genital rhabdomyoma", - "Thymoma; type B1; NOS", - "Apocrine adenoma", - "Chromophobe carcinoma", - "Aggressive osteoblastoma", - "Serous cystadenocarcinofibroma", - "Microcystic meningioma", - "Sex cord-gonadal stromal tumor; NOS", - "Glandular intraepithelial neoplasia; grade III", - "Water-clear cell adenocarcinoma", - "Intracystic carcinoma; NOS", - "Central osteosarcoma", - "Sympathicoblastoma", - "Cemento-ossifying fibroma", - "Fibromyoma", - "Pineal parenchymal tumor of intermediate differentiation", - "Histiocytoid hemangioma", - "Chronic granulocytic leukemia; BCR/ABL", - "M6B", - "Biliary intraepithelial neoplasia; high grade", - "Solitary fibrous tumor/hemangiopericytoma Grade 2 (CNS)", - "Thymoma; NOS", - "Solitary fibrous tumor/hemangiopericytoma Grade 3 (CNS)", - "Meningeal melanomatosis", - "Cystoma; NOS", - "Papillary serous tumor of low malignant potential", - "Acidophil adenoma", - "Intraductal tubulopapillary neoplasm", - "Olfactory neuroepithelioma", - "Follicular carcinoma; moderately differentiated", - "Cavernous lymphangioma", - "High-grade neuroendocrine carcinoma", - "Adenomyoma", - "Aggressive angiomyxoma", - "Juvenile angiofibroma", - "Enterochromaffin cell carcinoid", - "B lymphoblastic leukemia/lymphoma; NOS", - "Mesothelioma; biphasic; NOS", - "Mucinous cystoma", - "Carcinoma with osseous differentiation", - "Granular cell carcinoma", - "Brooke tumor", - "Mucinous carcinoma", - "Vipoma; NOS", - "Pleuropulmonary blastoma", - "Pick tubular adenoma", - "Juvenile hemangioma", - "Ductal intraepithelial neoplasia 3", - "Neurothekeoma", - "Sertoli cell carcinoma", - "Angiomatoid fibrous histiocytoma", - "Cystic hypersecretory carcinoma", - "MPNST with glandular differentiation", - "Pre-T ALL", - "Atypical choroid plexus papilloma", - "Adenosquamous carcinoma", - "Serous adenofibroma of borderline malignancy", - "Enteropathy associated T-cell lymphoma", - "Small cell carcinoma; hypercalcemic type", - "Papillary adenoma; NOS", - "Transitional cell carcinoma; sarcomatoid", - "Extranodal NK/T-cell lymphoma; nasal type", - "Intracystic papillary tumor with high grade intraepithelial neoplasia", - "Neuroblastoma; NOS", - "Trichilemmal carcinoma", - "Medulloblastoma; SHH-activated and TP53-mutant", - "Linitis plastica", - "Undifferentiated sarcoma", - "Tenosynovial giant cell tumor", - "Neuroectodermal tumor; NOS", - "Circumscribed arachnoidal cerebellar sarcoma", - "Papillary squamous cell carcinoma; non-invasive", - "Anaplastic astrocytoma; IDH-mutant", - "Inflammatory carcinoma", - "Lymphomatoid granulomatosis", - "Angiomyolipoma", - "Mucin-producing adenocarcinoma", - "Granular cell myoblastoma; NOS", - "Hilus cell tumor", - "Mucoid adenocarcinoma", - "Androblastoma; benign", - "FAB M2; t(8;21)(q22;q22)", - "Follicular lymphoma; grade 3", - "Intraductal papillary-mucinous adenoma", - "Carotid body tumor", - "Pilocytic astrocytoma", - "Lymphangioendothelioma; malignant", - "Serous cystoma", - "Squamous cell carcinoma; microinvasive", - "Papillary transitional cell neoplasm of low malignant potential", - "Angioblastoma", - "VIN III", - "Chondroid lipoma", - "Perifollicular fibroma", - "Clear cell ependymoma", - "Lobular carcinoma; NOS", - "Primary effusion lymphoma", - "Esthesioneuroblastoma", - "Mucinous carcinoma; gastric type", - "Spindle epithelial tumor with thymus-like differentiation", - "Aleukemic myeloid leukemia", - "Non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP)", - "Adult granulosa cell tumor", - "Clear cell adenofibroma of borderline malignancy", - "Kupffer cell sarcoma", - "Mediastinal (thymic) large B-cell lymphoma", - "Stromal tumor; benign", - "Carcinosarcoma; embryonal", - "Angioleiomyoma", - "Sertoli cell tumor; NOS", - "FAB M3 (includes all variants)", - "Myeloid sarcoma", - "Ductal carcinoma in situ; comedo type", - "Combined small cell-large carcinoma", - "Hodgkin disease; lymphocyte predominance; diffuse", - "Fibrochondrosarcoma", - "Pancreatic microadenoma", - "Aortic body tumor", - "Pleomorphic leiomyoma", - "Theca cell tumor", - "C cell carcinoma", - "Acute panmyelosis with myelofibrosis", - "Enterochromaffin-like cell carcinoid; NOS", - "Basosquamous carcinoma", - "Plexiform fibromyxoma", - "Transitional papilloma; inverted; NOS", - "Blast cell leukemia", - "Gamma heavy chain disease", - "FAB M4Eo", - "Malignant lymphoma; undifferentiated; Burkitt type", - "Bronchiolo-alveolar carcinoma; indeterminate type", - "Dysplastic nevus", - "Trophoblastic tumor; epithelioid", - "Adenocarcinoma combined with other types of carcinoma", - "Sclerosing hepatic carcinoma", - "Hodgkin paragranuloma; nodular", - "Low-grade myofibroblastic sarcoma", - "Diffuse melanocytosis", - "Endometrial sarcoma; NOS", - "Intraductal papillary neoplasm with low grade intraepithelial neoplasia", - "Hodgkin disease; nodular sclerosis; syncytial variant", - "Neuroendocrine carcinoma; moderately differentiated", - "Craniopharyngioma", - "Endometrioid adenofibroma; malignant", - "Epithelioid leiomyosarcoma", - "Noninvasive pancreatobiliary papillary neoplasm with high grade intraepithelial neoplasia", - "Lymphosarcoma; diffuse", - "Leiomyoma; NOS", - "Primary cutaneous CD30+ T-cell lymphoproliferative disorder", - "Malignant teratoma; intermediate", - "Serous tubal intraepithelial carcinoma", - "Duct adenoma; NOS", - "Solitary mastocytoma of skin", - "Intraductal papillary mucinous neoplasm with an associated invasive carcinoma", - "Hepatoma; benign", - "Medullary osteosarcoma", - "Squamous cell carcinoma; nonkeratinizing; NOS", - "Odontoma; NOS", - "Multiple meningiomas", - "Round cell liposarcoma", - "PP/PYY producing tumor", - "Melanocytoma; NOS", - "Von Recklinghausen disease", - "Gastrin cell tumor", - "Oat cell carcinoma", - "Sex cord-gonadal stromal tumor; mixed forms", - "Phyllodes tumor; NOS", - "Invasive encapsulated follicular variant of papillary thyroid carcinoma (invasive EFVPTC)", - "Mucous adenocarcinoma", - "Chronic myeloid leukemia; NOS", - "Black adenoma", - "Medullary carcinoma with lymphoid stroma", - "Acute myeloid leukemia; PML/RAR-alpha", - "Tumorlet; benign", - "B lymphoblastic leukemia/lymphoma with t(9;22)(q34;q11.2); BCR-ABL1", - "Malignant lymphoma; immunoblastic; NOS", - "Fibroma; NOS", - "Malignant lymphoma; large cleaved cell; NOS", - "Papillary hidradenoma", - "Haemangiosarcoma", - "Ancient schwannoma", - "Thymoma; type AB; malignant", - "Idiopathic thrombocythemia", - "Chondroblastic osteosarcoma", - "Peripheral T-cell lymphoma; pleomorphic small cell", - "Classical Hodgkin lymphoma; nodular sclerosis; NOS", - "Sertoli-Leydig cell tumor; retiform", - "Unclassified tumor; benign", - "Atypical adenoma", - "Basal cell carcinoma; nodular", - "Myxoid chondrosarcoma", - "Paget disease; extramammary", - "Mixed subependymoma-ependymoma", - "Adamantinoma of long bones", - "Serous microcystic adenoma", - "Solid teratoma", - "Papillary carcinoma; tall cell", - "Liposarcoma; well differentiated", - "Neurilemoma; NOS", - "Refractory anemia", - "Subareolar duct papillomatosis", - "Periosteal fibrosarcoma", - "Plexiform schwannoma", - "Intraductal papillary neoplasm with intermediate grade neoplasia", - "Leydig cell tumor; NOS", - "Nonencapsulated sclerosing adenocarcinoma", - "Adenocarcinoid tumor", - "Serous papillary cystic tumor of borderline malignancy", - "Mixed acidophil-basophil carcinoma", - "Glomus tumor; NOS", - "Plasmacytoma of bone", - "Papillary carcinoma; follicular variant", - "Phyllodes tumor; benign", - "Myeloproliferative disease; NOS", - "Dermatofibrosarcoma protuberans; NOS", - "Squamous carcinoma", - "Malignant lymphoma; cleaved cell; NOS", - "Chronic myelogenous leukemia; t(9;22)(q34;q11)", - "Ependymoblastoma", - "Enteroglucagonoma; NOS", - "Basaloid squamous cell carcinoma", - "Acinar cell adenoma", - "Post transplant lymphoproliferative disorder; NOS", - "Chronic granulocytic leukemia; NOS", - "Intraductal papillomatosis; NOS", - "Malignant multilocular cystic nephroma", - "Dysembryoplastic neuroepithelial tumor", - "Myelogenous leukemia; NOS", - "Pituicytoma", - "Ecchondroma", - "Adenocarcinoma in a polyp; NOS", - "Tibial adamantinoma", - "Myxopapillary ependymoma", - "Hepatoma; NOS", - "Mucinous adenoma", - "Malignant tumor; clear cell type", - "Serous adenofibroma; NOS", - "Mixed tumor; NOS", - "Mixed endocrine and exocrine adenocarcinoma", - "Myelofibrosis with myeloid metaplasia", - "Acute myeloid leukemia; NOS", - "Mucinous carcinoid", - "Protoplasmic astrocytoma", - "Proliferating trichilemmal cyst", - "Choroid plexus papilloma; anaplastic", - "Lymphatic leukemic; NOS", - "Differentiated-type vulvar intraepithelial neoplasia", - "GIST; NOS", - "AML M6", - "Follicular carcinoma; encapsulated", - "Anaplastic large cell lymphoma; NOS", - "Mullerian mixed tumor", - "Gastrointestinal autonomic nerve tumor", - "Cystosarcoma phyllodes; malignant", - "Neuroendocrine carcinoma; poorly differentiated", - "Endodermal sinus tumor", - "Glomus jugulare tumor; NOS", - "CNS Embryonal tumor with rhabdoid features", - "T/NK-cell lymphoma", - "Malignant lymphoma; plasmacytoid", - "Ceruminous adenocarcinoma", - "Adrenal cortical tumor; malignant", - "Stem cell leukemia", - "Adult T-cell leukemia/lymphoma (HTLV-1 positive) (includes all variants)", - "Epithelioma; benign", - "Epithelioma; NOS", - "Metatypical carcinoma", - "Odontogenic ghost cell tumor", - "Androblastoma; NOS", - "Carcinoid tumor; argentaffin; malignant", - "DCIS; NOS", - "Malignant lymphoma; NOS", - "Papillary carcinoma; encapsulated", - "Immunoproliferative disease; NOS", - "Complex odontoma", - "Dermoid cyst with secondary tumor", - "Adrenal cortical adenocarcinoma", - "Papillary serous cystadenocarcinoma", - "Lipomatous medulloblastoma", - "Mesonephric adenoma", - "Histiocytic sarcoma", - "Squamous cell carcinoma; NOS", - "Xanthofibroma", - "Fetal adenoma", - "Peripheral T-cell lymphoma; AILD (Angioimmunoblastic Lymphadenopathy with Dysproteinemia)", - "Mixed mesenchymal sarcoma", - "Intracanalicular fibroadenoma", - "Large granular lymphocytosis; NOS", - "Adenocarcinoma; cribriform comedo-type", - "Endocervical adenocarcinoma usual type", - "Adenocarcinoma in polypoid adenoma", - "Rhabdoid tumor; NOS", - "Lipoma; NOS", - "Leiomyosarcoma; NOS", - "Intermediate and giant congenital nevus", - "Papillary carcinoma; diffuse sclerosing", - "Malignant melanoma in giant pigmented nevus", - "Acral lentiginous melanoma; malignant", - "Desmoplastic mesothelioma", - "Refractory neutropenia", - "Basophil adenoma", - "Inflammatory myofibroblastic tumor", - "Adenomatosis; NOS", - "Juxtaglomerular tumor", - "FAB M4", - "Intestinal T-cell lymphoma", - "Solid carcinoma; NOS", - "Craniopharyngioma; papillary", - "Malignant giant cell tumor of soft parts", - "Villous papilloma", - "Parosteal osteosarcoma", - "Osteoid osteoma; NOS", - "Transitional papilloma", - "Ductal carcinoma in situ; micropapillary", - "Glandular intraepithelial neoplasia; grade II", - "Malignant lymphoma; noncleaved; diffuse; NOS", - "Acute lymphoblastic leukemia; mature B-cell type", - "Alpha heavy chain disease", - "Telangiectatic osteosarcoma", - "Glomangiosarcoma", - "Atypical proliferative endometrioid tumor", - "Hemangioendothelioma; malignant", - "Brenner tumor; NOS", - "Serous surface papillary carcinoma", - "Retinoblastoma; spontaneously regressed", - "Prostatic intraepithelial neoplasia; grade III", - "Sezary disease", - "Soft tissue tumor; benign", - "Malignant lymphoma; centroblasticcentrocytic; NOS", - "Osteogenic sarcoma; NOS", - "Transitional meningioma", - "Malignant myelosclerosis", - "Papillary cystadenoma; NOS", - "Refractory anemia with sideroblasts", - "Gastrinoma; malignant", - "Adenomyoepithelioma with carcinoma", - "Cerebellar liponeurocytoma", - "Soft tissue sarcoma", - "Intraductal carcinoma; solid type", - "Medullomyoblastoma", - "Soft tissue tumor; malignant", - "Epidermoid carcinoma; NOS", - "Hepatocellular carcinoma; fibrolamellar", - "Systemic mastocytosis with AHNMD", - "Meningothelial meningioma", - "Mixed phenotype acute leukemia with t(v;11q23); MLL rearranged", - "Gliosarcoma", - "Mucinous tumor; NOS; of low malignant potential", - "Squamous intraepithelial neoplasia; grade I", - "Malignant reticulosis; NOS", - "Hodgkin lymphoma; lymphocyte predominance; nodular", - "Reticulohistiocytoma", - "Intraductal tubular-papillary neoplasm; high grade", - "Nonencapsulated sclerosing carcinoma", - "Aggressive NK-cell leukaemia", - "Calcifying nested epithelial stromal tumor", - "Adenomatoid tumor; NOS", - "Mucinous adenocarcinofibroma", - "Mucinous cystadenocarcinoma; NOS", - "Glioma; malignant", - "Langerhans cell sarcoma", - "Lentigo maligna melanoma", - "Cylindrical cell papilloma", - "Noninvasive pancreatobiliary papillary neoplasm with high grade dysplasia", - "Refractory anemia with ring sideroblasts associated with marked thrombocytosis", - "Acute myeloid leukemia; CBF-beta/MYH11", - "Solitary fibrous tumor/hemangiopericytoma Grade 1 (CNS)", - "Aleukemic lymphoid leukemia", - "Fibrous histiocytoma; NOS", - "Precursor B-cell lymphoblastic lymphoma", - "Gastrointestinal stromal sarcoma", - "Nodular hidradenoma; malignant", - "Spindle cell lipoma", - "Osteoma; NOS", - "Diffuse cutaneous mastocytosis", - "Giant cell tumor of tendon sheath", - "Chronic myelomonocytic leukemia; NOS", - "Hyalinizing trabecular adenoma", - "Follicular carcinoma; trabecular", - "Hepatoblastoma; epithelioid", - "Diffuse large B-cell lymphoma associated with chronic inflammation", - "Cervical intraepithelial neoplasia; low grade", - "Cellular fibroma", - "Neuroendocrine tumor; grade 1", - "Sarcoma; NOS", - "Therapy-related acute myeloid leukemia; alkylating agent related", - "Endometrial stromatosis", - "Perineural MPNST", - "Ceruminous carcinoma", - "Malignant melanoma in junctional nevus", - "Intraductal papillary-mucinous tumor with moderate dysplasia", - "Microglioma", - "Pleomorphic lobular carcinoma in situ", - "Noninfiltrating intraductal papillary adenocarcinoma", - "Orchioblastoma", - "B-cell lymphoma; unclassifiable; with features intermediate between diffuse large B-cell lymphoma and classical Hodgkin lymphoma", - "Metaplastic carcinoma with chondroid differentiation", - "Malignant histiocytosis", - "FAB M5 (includes all variants)", - "Mucinous adenofibroma; NOS", - "Epithelial tumor; malignant", - "Agnogenic myeloid metaplasia", - "FAB Ll", - "Malignant lymphoma; histiocytic; nodular", - "Nonlipid reticuloendotheliosis", - "Peripheral odontogenic fibroma", - "Gonadal stromal tumor; NOS", - "Osteochondrosarcoma", - "Bronchio-alveolar carcinoma; mixed mucinous and non-mucinous", - "Malignant lymphomatous polyposis", - "Urothelial carcinoma; NOS", - "Follicular dendritic cell sarcoma", - "Vaginal intraepithelial neoplasia; grade III", - "Interdigitating dendritic cell sarcoma", - "Teratoma; differentiated", - "Intramuscular lipoma", - "Malignant lymphoma; large cell; noncleaved; diffuse", - "Neuroendocrine carcinoma; low grade", - "Pro-T ALL", - "Symplastic leiomyoma", - "Thymoma; type B2; malignant", - "Myelomonocytic leukemia; NOS", - "Transitional cell papilloma; NOS", - "Atypical leiomyoma", - "MPNST; NOS", - "Classical Hodgkin lymphoma; lymphocyte depletion; diffuse fibrosis", - "Grawitz tumor", - "Transitional cell papilloma; inverted; NOS", - "Chondromatosis; NOS", - "Enterochromaffin-like cell tumor; malignant", - "Malignant lymphoma; lymphocytic; NOS", - "Pseudomucinous cystadenoma; NOS", - "Hemangioendothelial sarcoma", - "Malignant hydatidiform mole", - "Hereditary leiomyomatosis & RCC-associated renal cell carcinoma", - "Carcinosarcoma; NOS", - "Angiomyoma", - "Mixed tumor; malignant; NOS", - "Glomangiomyoma", - "Carcinoma in situ; NOS", - "Medulloblastoma; classic", - "Urothelial carcinoma in situ", - "Epithelioid cell sarcoma", - "Tubular carcinoma", - "Fibroblastic reticular cell tumor", - "Myeloid and lymphoid neoplasms with PDGFRA rearrangement", - "Bile duct adenocarcinoma", - "Intraepidermal squamous cell carcinoma; Bowen type", - "DCIS; papillary", - "Hidrocystoma", - "Intraepidermal carcinoma; NOS", - "Fibromyxosarcoma", - "Thymoma; malignant; NOS", - "Malignant lymphoma; lymphocytic; well differentiated; nodular", - "Chronic myelogenous leukemia; BCR-ABL positive", - "Undifferentiated uterine sarcoma", - "Mixed meningioma", - "Hidradenocarcinoma", - "Acute myeloid leukemia with myelodysplasia-related changes", - "Krukenberg tumor", - "Pleomorphic lobular carcinoma", - "Enteroglucagonoma; malignant", - "Medulloblastoma with extensive nodularity", - "Plasmacytic lymphoma", - "Extra-adrenal paraganglioma; malignant", - "Squamous cell carcinoma; pseudoglandular", - "Serrated adenoma", - "Myofibroblastic sarcoma", - "Metaplastic meningioma", - "Combined small cell carcinoma", - "Myxoid liposarcoma", - "Thymoma; atypical; malignant", - "Cutaneous mastocytosis", - "T-cell lymphoma; NOS", - "Transitional pineal tumor", - "Chromaffin paraganglioma", - "Juxtacortical osteosarcoma", - "Argentaffinoma; malignant", - "Comedocarcinoma; NOS", - "ALK positive large B-cell lymphoma", - "Indeterminate dendritic cell tumor", - "Serous endometrial intraepithelial carcinoma", - "Noninvasive pancreatobiliary papillary neoplasm with low grade intraepithelial neoplasia", - "Squamous intraepithelial neoplasia; grade III", - "Neuroendocrine tumor; well differentiated", - "Neuroendocrine tumor; grade 2", - "Adenolipoma", - "Intramuscular hemangioma", - "Cystadenocarcinoma; NOS", - "Hemangioma simplex", - "Mucoid cell adenocarcinoma", - "Anaplastic large cell lymphoma; T cell and Null cell type", - "Papillary renal cell carcinoma", - "Meningioma; anaplastic", - "Squamous cell carcinoma; small cell; nonkeratinizing", - "Systemic mastocytosis with associated hematological clonal non-mast cell disorder", - "Hurthle cell adenocarcinoma", - "Adenocarcinoma in situ; non-mucinous", - "Alveolar soft part sarcoma", - "Papillary adenofibroma", - "Carcinoid; NOS; of appendix", - "Low-grade central osteosarcoma", - "Juxtacortical chondrosarcoma", - "Lipoma-like liposarcoma", - "Dysplastic gangliocytoma of cerebellum (Lhermitte-Duclos)", - "Hepatocellular carcinoma; NOS", - "Pancreatoblastoma", - "Medullary adenocarcinoma", - "Pinkus tumor", - "Thymoma; type B3; malignant", - "Acute myelomonocytic leukemia with abnormal eosinophils", - "Collecting duct carcinoma", - "Adenomatous polyp; NOS", - "Atypical meningioma", - "Cyst-associated renal cell carcinoma", - "Olfactory neurogenic tumor", - "Glioblastoma with sarcomatous component", - "Intraductal carcinoma and lobular carcinoma in situ", - "Epithelioid and spindle cell nevus", - "Ossifying renal tumor", - "Non-small cell carcinoma", - "Precursor T-cell lymphoblastic lymphoma", - "Bronchiolo-alveolar carcinoma; Clara cell and goblet cell type", - "Extraventricular neurocytoma", - "Hepatoid yolk sac tumor", - "Malignant melanoma in precancerous melanosis", - "Ameloblastic fibrosarcoma", - "Mature T ALL", - "Meningeal sarcomatosis", - "Lymphoepithelioma", - "Metastasizing leiomyoma", - "Parietal cell adenocarcinoma", - "Squamous cell epithelioma", - "Villoglandular adenoma", - "Serous cystadenoma; NOS", - "Pigmented basal cell carcinoma", - "Classical Hodgkin lymphoma; nodular sclerosis; grade 2", - "Cutaneous T-cell lymphoma; NOS", - "Thymoma; type C", - "Soft tissue perineurioma", - "Leydig cell tumor; benign", - "Ductal carcinoma in situ; solid type", - "Retinoblastoma; NOS", - "Odontogenic myxofibroma", - "Clear cell cystic tumor of borderline malignancy", - "Peripheral T-cell lymphoma; pleomorphic medium and large cell", - "Papillary and follicular adenocarcinoma", - "Gonadoblastoma", - "Colloid adenoma", - "Myelodysplastic syndrome with isolated del (5q)", - "Sclerosing liposarcoma", - "Plexiform leiomyoma", - "Astrocytoma; NOS", - "Malignant melanoma; NOS", - "Bronchiolo-alveolar carcinoma; Clara cell", - "Serrated adenocarcinoma", - "Trabecular carcinoma", - "Large cell carcinoma with rhabdoid phenotype", - "Squamous intraepithelial neoplasia; grade II", - "Myxoinflammatory fibroblastic sarcoma (MIFS)", - "Diffuse leptomeningeal glioneuronal tumor", - "Argentaffinoma; NOS", - "Eosinophil adenoma", - "Clear cell tumor; NOS", - "Malignant lymphoma; large B-cell; NOS", - "Eccrine papillary adenocarcinoma", - "Basophil carcinoma", - "Blue nevus; malignant", - "Anal intraepithelial neoplasia; grade III", - "Endometrial stromal sarcoma; low grade", - "Embryonal carcinoma; NOS", - "Hodgkin lymphoma; lymphocyte-rich", - "Ameloblastic fibrodentinoma", - "Yolk sac tumor", - "Acute myeloblastic leukemia", - "Myeloid neoplasms with PDGFRB rearrangement", - "Primary cutaneous CD4-positive small/medium T-cell lymphoma", - "Papillary serous cystadenoma; borderline malignancy", - "Odontogenic tumor; malignant", - "Duct cell carcinoma", - "Hairy nevus", - "Myelosclerosis with myeloid metaplasia", - "Marginal zone lymphoma; NOS", - "Infiltrating angiolipoma", - "Amelanotic melanoma", - "Adenocarcinoma; metastatic; NOS", - "GIST; malignant", - "Subacute lymphocytic leukemia", - "Hepatosplenic gamma-delta cell lymphoma", - "Essential thrombocythemia", - "Verrucous papilloma", - "Ossifying fibroma", - "Oligodendroglioma; NOS", - "Lipid-rich carcinoma", - "Lipoid cell tumor of ovary", - "B lymphoblastic leukemia/lymphoma with t(1;19)(q23;p13.3); E2A-PBX1 (TCF3-PBX1)", - "Parachordoma", - "Juvenile astrocytoma", - "Desmoplastic medulloblastoma", - "Solid carcinoma with mucin formation", - "Haemangioblastoma", - "Langerhans cell histiocytosis; disseminated", - "Mesothelial papilloma", - "Splenic marginal zone B-cell lymphoma", - "Megakaryocytic leukemia", - "Sarcomatosis; NOS", - "Intraductal micropapillary carcinoma", - "Invasive lobular carcinoma", - "Reserve cell carcinoma", - "Flat intraepithelial neoplasia; high grade", - "Kaposiform hemangioendothelioma", - "Tumor; malignant; NOS", - "Monocytoid B-cell lymphoma", - "Noninvasive pancreatobiliary papillary neoplasm with low grade dysplasia", - "Ossifying fibromyxoid tumor", - "Carcinoid tumor; NOS", - "Pigmented dermatofibrosarcoma protuberans", - "Beta cell tumor; malignant", - "Hepatoblastoma; mixed epithelial-mesenchymal", - "Plexiform neuroma", - "L-cell tumor", - "Bronchial adenoma; NOS", - "Spindle cell sarcoma", - "Squamous cell carcinoma with horn formation", - "FAB M2; NOS", - "Subcutaneous panniculitis-like T-cell lymphoma", - "Pineoblastoma", - "Chromophobe adenocarcinoma", - "Hemangioendothelioma; benign", - "Ewing tumor", - "Pagetoid reticulosis", - "Endocrine adenomatosis", - "Pinealoma", - "Struma ovarii and carcinoid", - "Sex cord-gonadal stromal tumor; incompletely differentiated", - "Hurthle cell adenoma", - "Neoplasm; malignant", - "Polymorphic post transplant lymphoproliferative disorder", - "Diktyoma; benign", - "Acute myeloid leukemia; minimal differentiation", - "Psammomatous meningioma", - "Carcinomatosis", - "Extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue", - "Tubulovillous adenoma; NOS", - "Odontogenic myxoma", - "Fetal lipoma; NOS", - "Familial polyposis coli", - "Myeloid and lymphoid neoplasms with FGFR1 abnormalities", - "Giant cell and spindle cell carcinoma", - "Mucinous cystic tumor with moderate dysplasia", - "Malignant serous cystadenofibroma", - "Apocrine cystadenoma", - "Chronic myelomonocytic leukemia; Type 1", - "Seminoma with high mitotic index", - "Adenocarcinoma with cartilaginous and osseous metaplasia", - "Sinonasal papilloma; NOS", - "Interdigitating cell sarcoma", - "Stromal myosis; NOS", - "Wolffian duct tumor", - "Calcifying odontogenic cyst", - "Fibroepithelioma; NOS", - "Oncocytic adenoma", - "RAEB II", - "Syncytial meningioma", - "Subependymal giant cell astrocytoma", - "Sinonasal papilloma; exophytic", - "Skin appendage tumor; benign", - "Diffuse astrocytoma; IDH-wildtype", - "Sympathetic paraganglioma", - "Myloproliferative neoplasm; unclassifiable", - "Acinic cell tumor", - "Ameloblastic odontosarcoma", - "Embryonal hepatoma", - "Juvenile chronic myelomonocytic leukemia", - "Cortical T ALL", - "Thymoma; lymphocyte-rich; NOS", - "Micropapillary adenocarcinoma", - "Intraductal papillary-mucinous tumor with low grade dysplasia", - "Spindle cell oncocytoma", - "Renal cell carcinoma; chromophobe type", - "Renal cell carcinoma; NOS", - "Duct adenocarcinoma; NOS", - "Smooth muscle tumor; NOS", - "FAB L3", - "Benign cystic nephroma", - "Chondrosarcoma grade 2/3", - "Langerhans cell histiocytosis; unifocal", - "Juvenile myelomonocytic leukemia", - "Monoclonal gammopathy; NOS", - "Myxosarcoma", - "Embryonal tumor with rhabdoid features", - "Adrenal medullary paraganglioma", - "Medullocytoma", - "Syringadenoma; NOS", - "Infiltrating lipoma", - "Papillary cystic tumor", - "Atypical proliferative mucinous tumor", - "Craniopharyngioma; adamantinomatous", - "Multiple endocrine adenomas", - "Teratoid medulloepithelioma; benign", - "Polar spongioblastoma", - "Fibroepithelial basal cell carcinoma; Pinkus type", - "Atypical fibroxanthoma", - "Microcystic adnexal carcinoma", - "Triton tumor; malignant", - "Bowen disease", - "Esthesioneuroepithelioma", - "Gastrointestinal stromal tumor; NOS", - "Non-invasive mammary carcinoma", - "Islet cell adenocarcinoma", - "Adenocarcinoma; pancreatobiliary type", - "Codman tumor", - "Liver cell adenoma", - "Renal cell carcinoma; spindle cell", - "Paget disease and intraductal carcinoma of breast", - "Acute lymphoblastic leukemia; precursor cell type", - "Thymoma; mixed type; malignant", - "Angiofibroma; NOS", - "Verrucous squamous cell carcinoma", - "Ependymoma; RELA fusion-positive", - "Neuroendocrine carcinoma; NOS", - "Epithelioid hemangioendothelioma; malignant", - "Refractory cytopenia with multilineage dysplasia", - "Angiocentric glioma", - "Ewing sarcoma", - "Cellular leiomyoma", - "Chronic lymphocytic leukemia; B-cell type (includes all variants of BCLL)", - "Mucin-secreting carcinoma", - "Pleomorphic cell sarcoma", - "Polymorphous low grade adenocarcinoma", - "Mixed glioma", - "Systemic EBV positive T-cell lymphoproliferative disease of childhood", - "Choriocarcinoma; NOS", - "Mucinous cystic neoplasm with low-grade intraepithelial neoplasia", - "Mucinous cystic tumor of borderline malignancy", - "Primary intraosseous carcinoma", - "Thymoma; type B1; malignant", - "Adenoacanthoma", - "Chondrosarcoma; NOS", - "Thymoma; organoid; malignant", - "Chloroma", - "Infiltrating and papillary adenocarcinoma", - "Acute promyelocytic leukaemia; PML-RAR-alpha", - "Partial hydatidiform mole", - "Mesothelioma; benign", - "Infiltrating duct carcinoma; NOS", - "Adenocarcinoma with neuroendocrine differentiation", - "Aggressive fibromatosis", - "Proliferating trichilemmal tumor", - "Papillary serous cystadenoma; NOS", - "Mixed adenomatous and hyperplastic polyp", - "Mixed cell adenoma", - "Polymorphic reticulosis", - "Malignant lymphoma; large cell; follicular; NOS", - "Astroglioma", - "Juvenile melanoma", - "Aleukemic lymphocytic leukemia", - "Monoblastic leukemia; NOS", - "T-cell large granular lymphocytosis", - "Combined/mixed carcinoid and adenocarcinoma", - "Papillary ependymoma", - "Intraosseous low grade osteosarcoma", - "Follicular carcinoma; NOS", - "Sarcoma botryoides", - "Teratoma with malignant transformation", - "Paraganglioma; benign", - "Intraepidermal epithelioma of Jadassohn", - "Tubular androblastoma; NOS", - "Hepatocholangiocarcinoma", - "Periapical cemento-osseous dysplasia", - "FAB M2; AML1(CBF-alpha)/ETO", - "Sweat gland carcinoma", - "Endovascular papillary angioendothelioma", - "Mucinous cystic neoplasm with intermediate-grade intraepithelial neoplasia", - "Secretory carcinoma of breast", - "Urothelial carcinoma with divergent differentiation", - "Glucagonoma; malignant", - "Papillary urothelial carcinoma; non-invasive", - "Mixed pineocytoma-pineoblastoma", - "Acute biphenotypic leukemia", - "Subependymal astrocytoma; NOS", - "Mixed germ cell tumor", - "Hodgkin paragranuloma; NOS", - "Pseudomucinous cystadenocarcinoma; NOS", - "Hepatocellular carcinoma; pleomorphic type", - "Sex cord tumor; NOS", - "Granulosa cell tumor; juvenile", - "Acute myeloid leukemia with t(6;9)(p23;q34); DEK-NUP214", - "Chronic myelomonocytic leukemia in transformation", - "Hodgkin disease; lymphocytic-histiocytic predominance", - "Ameloblastic fibrodentinosarcoma", - "Chronic eosinophilic leukemia; NOS", - "Malignant mast cell tumor", - "Malignant lymphoma; undifferentiated cell; non-Burkitt", - "Neurofibroma; NOS", - "Anaplastic pleomorphic xanthroastrocytoma", - "Capillary lymphangioma", - "Endometrioid carcinoma with squamous differentiation", - "Adenoma; NOS", - "Ghost cell odontogenic carcinoma", - "Granular cell tumor; malignant", - "Squamous cell carcinoma; metastatic; NOS", - "Burkitt tumor", - "Medulloblastoma; group 3", - "Nephrogenic adenofibroma", - "Atypical fibrous histiocytoma", - "Thymic large B-cell lymphoma", - "Thymoma; type A; NOS", - "Medulloblastoma; SHH-activated and TP53-wildtype", - "Granular cell tumor; NOS", - "Astrocytic glioma", - "Parasympathetic paraganglioma", - "Seromucinous carcinoma", - "Acinar cell cystadenocarcinoma", - "Osteosarcoma in Paget disease of bone", - "Carcinoid; NOS", - "Hodgkin disease; nodular sclerosis; NOS", - "Insular carcinoma", - "Nerve sheath myxoma", - "Malignant chondroid syringoma", - "Adenocarcinoma with mixed subtypes", - "Eccrine acrospiroma", - "Pericanalicular fibroadenoma", - "Acute progressive histiocytosis X", - "Duct carcinoma; NOS", - "Burkitt cell leukemia", - "Dedifferentiated liposarcoma", - "Myxolipoma", - "Oligodendroglioma; anaplastic", - "Sessile serrated adenoma", - "Acquired tufted hemangioma", - "Blastic NK cell lymphoma", - "Pleomorphic rhabdomyosarcoma; adult type", - "Sweat gland tumor; malignant", - "Mixed acidophil-basophil adenoma", - "Turban tumor", - "Megakaryocytic myelosclerosis", - "Hemangioma; NOS", - "Myeloid leukemia; NOS", - "Giant cell tumor of bone; NOS", - "Medulloblastoma; NOS", - "Paraganglioma; NOS", - "Clear cell cystadenofibroma of borderline malignancy", - "Malignant mastocytosis", - "Classical Hodgkin lymphoma; lymphocyte-rich", - "Epithelioid sarcoma", - "Adenocarcinoma in situ in adenomatous polyp", - "Therapy-related myelodysplastic syndrome; NOS", - "Follicular lymphoma; NOS", - "Low-grade serous carcinoma", - "Sweat gland adenoma", - "Colloid carcinoma", - "Myeloma; NOS", - "Intraductal papillary neoplasm with high grade intraepithelial neoplasia", - "Squamous intraepithelial neoplasia; high grade", - "Psammomatous schwannoma", - "Myxoid leiomyosarcoma", - "Papillary carcinoma; NOS", - "Atypical carcinoid tumor", - "Periosteal osteosarcoma", - "Spitz nevus", - "Primary diffuse large B-cell lymphoma of the CNS", - "Primary cutaneous gamma-delta T-cell lymphoma", - "Neoplasm; benign", - "Intracystic papillary neoplasm with associated invasive carcinoma", - "B-cell lymphoma; unclassifiable; with features intermediate between diffuse large B-cell lymphoma and Burkitt lymphoma", - "Trichoepithelioma", - "Tumor; benign", - "Hodgkin lymphoma; nodular sclerosis; grade 2", - "Intraductal and lobular carcinoma", - "Squamous cell carcinoma; large cell; keratinizing", - "Thymoma; lymphocytic; NOS", - "Follicular carcinoma; oxyphilic cell", - "Seminoma; NOS", - "Squamous cell carcinoma; large cell; nonkeratinizing; NOS", - "Mucinous carcinoma; intestinal type", - "Polycythemia rubra vera", - "Mast cell leukaemia", - "Angioimmunoblastic T-cell lymphoma", - "Ectomesenchymoma", - "Fibroblastic osteosarcoma", - "Lobular carcinoma; noninfiltrating", - "Esophageal squamous intraepithelial neoplasia (dysplasia); high grade", - "DCIS; comedo type", - "Lobular carcinoma in situ; NOS", - "Glandular intraepithelial neoplasia; high grade", - "Struma ovarii; NOS", - "Perineurioma; malignant", - "Papillary urothelial carcinoma", - "Hand-Schuller-Christian disease", - "Invasive fibroma", - "Sebaceous epithelioma", - "Pleomorphic lipoma", - "Giant fibroadenoma", - "Magnocellular nevus", - "Non-invasive EFVPTC", - "Adenocarcinoma in situ in tubulovillous adenoma", - "Aorticopulmonary paraganglioma", - "Atypical chronic myeloid leukemia; BCR/ABL negative", - "Malignant mucinous adenofibroma", - "Multicentric basal cell carcinoma", - "Lymphoepithelial carcinoma", - "Serous adenocarcinofibroma", - "Hepatocellular carcinoma; scirrhous", - "Regressing nevus", - "Subacute lymphatic leukemia", - "Acute monocytic leukemia", - "Traditional serrated adenoma", - "Anaplastic oligoastrocytoma", - "Urothelial papilloma; NOS", - "Abdominal desmoid", - "Glomangioma", - "Prolymphocytic leukemia; NOS", - "Chromophobe adenoma", - "Sertoli cell tumor with lipid storage", - "Anaplastic oligodendroglioma; IDH-mutant and 1p/19q-codeleted", - "Gynandroblastoma", - "Cholangiocarcinoma", - "Angiomyosarcoma", - "BALT lymphoma", - "Brown fat tumor", - "Mucoid cell adenoma", - "Large cell carcinoma; NOS", - "Precancerous melanosis; NOS", - "Odontoameloblastoma", - "Encapsulated papillary carcinoma", - "Spindled mesothelioma", - "Junction nevus", - "Thymoma; cortical; NOS", - "Pleomorphic adenoma", - "Basaloid carcinoma", - "Localized fibrous tumor", - "Endometrioid cystadenofibroma; borderline malignancy", - "Desmoplastic melanoma; malignant", - "Juxtacortical chondroma", - "Nonpigmented nevus", - "Intraductal papillary neoplasm with high grade dysplasia", - "Teratoid medulloepithelioma", - "Clear cell adenocarcinoma; mesonephroid", - "Periosteal chondrosarcoma", - "Arrhenoblastoma; malignant", - "Chondroid chordoma", - "Bronchiolo-alveolar carcinoma; non-mucinous", - "Proliferative dermal lesion in congenital nevus", - "Carcinoma; anaplastic; NOS", - "Adult T-cell lymphoma", - "Burkitt lymphoma; NOS (Includes all variants)", - "Minimally invasive adenocarcinoma; non-mucinous", - "Canalicular adenoma", - "Queyrat erythroplasia", - "Junctional nevus; NOS", - "Leptomeningeal sarcoma", - "CPNET", - "Oxyphilic adenocarcinoma", - "Cellular ependymoma", - "Endometrioid adenocarcinoma; villoglandular", - "Carcinoma in situ in adenomatous polyp", - "Immunoproliferative small intestinal disease", - "Sweat gland tumor; benign", - "Renal cell adenocarcinoma", - "Malignant lymphoma; histiocytic; diffuse", - "Calcifying epithelial odontogenic tumor", - "Papillary mucinous cystadenoma; NOS", - "Epidermoid carcinoma in situ; NOS", - "Adenocystic carcinoma", - "Glioma; NOS", - "Cystic partially differentiated nephroblastoma", - "Basal cell epithelioma", - "Bile duct carcinoma", - "Periosteal fibroma", - "Strumal carcinoid", - "Basal cell carcinoma; fibroepithelial", - "Thymoma; type B3; NOS", - "Fetal adenocarcinoma", - "Glucagonoma; NOS", - "Chondroblastoma; NOS", - "Bronchiolo-alveolar carcinoma; NOS", - "Mucoepidermoid carcinoma", - "Malignant lymphoma; small cell; noncleaved; diffuse", - "Small cell sarcoma", - "Malignant lymphoma; large cell; noncleaved; follicular", - "Mixed tumor; salivary gland type; malignant", - "Epidermoid carcinoma; small cell; nonkeratinizing", - "Malignant lymphoma; centroblastic; follicular", - "Papillary adenocarcinoma; follicular variant", - "Papillary pseudomucinous cystadenoma; borderline malignancy", - "Atypical teratoid/rhabdoid tumor", - "Pre-B ALL", - "Myoma", - "Malignant lymphoma; large cell; diffuse; NOS", - "Osteosarcoma; NOS", - "Choriocarcinoma combined with embryonal carcinoma", - "Lipoblastomatosis", - "Immature teratoma; malignant", - "Malignant lymphoma; non-Hodgkin; NOS", - "Pineocytoma", - "Pulmonary blastoma", - "Osteochondroma", - "Spermatocytoma", - "Choriocarcinoma combined with teratorna", - "Medulloblastoma; WNT-activated", - "Endometrioid adenocarcinoma; secretory variant", - "Gastrointestinal stromal tumor; malignant", - "Intradermal nevus", - "Cementifying fibroma", - "Gastrinoma; NOS", - "Alveolar rhabdomyosarcoma", - "Jadassohn blue nevus", - "Osteofibroma", - "Noninfiltrating intracystic carcinoma", - "Basal cell carcinoma; desmoplastic type", - "Mesonephroma; benign", - "Renal cell carcinoma; unclassified", - "Myelolipoma", - "Chronic leukemia; NOS", - "Sweat gland adenocarcinoma", - "Endometrioid cystadenofibroma; NOS", - "Invasive lobular carcinoma; solid type", - "Chorioangioma", - "Classical Hodgkin lymphoma; mixed cellularity; NOS", - "Neuroma; NOS", - "Malignant lymphoma; mixed lymphocytic-histiocytic; diffuse", - "Desmoplastic melanoma; amelanotic", - "Subacute monocytic leukemia", - "Mixed hepatocellular and bile duct carcinoma", - "Malignant peripheral nerve sheath tumor with rhabdomyoblastic differentiation", - "Neoplasm; secondary", - "Spindle cell angioendothelioma", - "Infiltrating basal cell carcinoma; non-sclerosing", - "Adenocarcinoma with spindle cell metaplasia", - "Malignant schwannoma with rhabdomyoblastic differentiation", - "RAEB", - "Ameloblastic fibroma", - "Mucinous cystic neoplasm with low-grade dysplasia", - "Somatostatinoma; NOS", - "Congenital fibrosarcoma", - "Fibrous papule of nose", - "Synovial sarcoma; spindle cell", - "Retinal anlage tumor", - "CIN III with severe dysplasia", - "Transitional cell papilloma; inverted; benign", - "Beta cell adenoma", - "Epithelioid hemangioma", - "Perivascular epithelioid cell tumor; malignant", - "Chronic lymphoproliferative disorder of NK cells", - "Mixed acinar-endocrine-ductal carcinoma", - "Papillary adenocarcinoma; NOS", - "Sarcomatoid mesothelioma", - "Chondroblastoma; malignant", - "Histiocytosis X; NOS", - "Intraepithelial squamous cell carcinoma", - "Mixed tumor; salivary gland type; NOS", - "Adenocarcinoma with squamous metaplasia", - "Fascial fibrosarcoma", - "Dedifferentiated chondrosarcoma", - "Granulocytic sarcoma", - "Acute erythremia", - "Adenomatoid odontogenic tumor", - "Glioblastoma multiforme", - "Adrenal cortical tumor; NOS", - "Endometrioid cystadenocarcinoma", - "Balloon cell nevus", - "Malignant lymphoma; mixed lymphocytic-histiocytic; nodular", - "Pigmented schwannoma", - "Glomoid sarcoma", - "Signet ring cell carcinoma", - "Adenolymphoma", - "Myelomatosis", - "Melanocytoma; eyeball", - "Adenosarcoma", - "Solid pseudopapillary carcinoma", - "Acute myeloid leukemia with multilineage dysplasia", - "Mast cell tumor; NOS", - "Thymoma; lymphocytic; malignant", - "Pulmonary myxoid sarcoma with EWSR1-CREB1 translocation", - "Rhabdoid sarcoma", - "Malignant lymphoma; mixed small and large cell; diffuse", - "Hodgkin lymphoma; lymphocyte depletion; reticular", - "Clear cell sarcoma; NOS", - "Cystosarcoma phyllodes; benign", - "Common precursor B ALL", - "Choriocarcinoma combined with other germ cell elements", - "Acinar adenocarcinoma", - "Intraductal papillary-mucinous tumor with intermediate dysplasia", - "Verrucous epidermoid carcinoma", - "Aortic body paraganglioma", - "Carcinoma with productive fibrosis", - "Systemic light chain disease", - "Chronic myelogenous leukemia; Philadelphia chromosome (Ph 1) positive", - "Germ cell tumor; NOS", - "Intravascular large B-cell lymphoma", - "Malignant lymphoma; large cell; cleaved and noncleaved", - "Degenerated schwannoma", - "G cell tumor; NOS", - "Melanotic progonoma", - "Adenoameloblastoma", - "Klatskin tumor", - "Intracystic papillary neoplasm with intermediate grade intraepithelial neoplasia", - "Squamous cell carcinoma; keratinizing; NOS", - "Sertoli-Leydig cell tumor; intermediate differentiation; with heterologous elements", - "Classical Hodgkin lymphoma; lymphocyte depletion; reticular", - "GANT", - "Papillary carcinoma in situ", - "Carcinoma with other types mesenchymal differentiation", - "Giant pigmented nevus; NOS", - "Acute myelogenous leukemia", - "Giant cell tumor of tendon sheath; malignant", - "Fibroadenoma; NOS", - "Melanotic neuroectodermal tumor", - "Small cell carcinoma pulmonary type", - "Adenofibroma; NOS", - "Encapsulated papillary carcinoma with invasion", - "Therapy-related myelodysplastic syndrome; alkylating agent related", - "Calcifying epithelioma of Malherbe", - "Acute myeloid leukemia without prior myelodysplastic syndrome", - "Chronic lymphocytic leukemia", - "Embryonal carcinoma; polyembryonal type", - "Hemolymphangioma", - "Angioimmunoblastic lymphadenopathy", - "Cellular blue nevus", - "Ovarian stromal tumor", - "Lennert lymphoma", - "Mucinous adenocarcinoma; endocervical type", - "Hilar cell tumor", - "Transitional papilloma; inverted; benign", - "Complete hydatidiform mole", - "Meningioma; NOS", - "Endometrioid cystadenofibroma; malignant", - "Spindle cell nevus; NOS", - "Tumor cells; uncertain whether benign or malignant", - "Subacute leukemia; NOS", - "Hidradenoma; NOS", - "Lepidic predominant adenocarcinoma", - "Mixed epithelioid and spindle cell melanoma", - "Transitional cell papilloma; benign", - "Hypereosinophilic syndrome", - "Papillary carcinoma; oxyphilic cell", - "Ductal carcinoma; cribriform type", - "Sialoblastoma", - "Gelatinous adenocarcinoma", - "Parietal cell carcinoma", - "T-cell rich/histiocyte-rich large B-cell lymphoma", - "Malignant lymphoma; large cell; noncleaved; NOS", - "Hepatoid adenocarcinoma", - "Glycogen-rich carcinoma", - "Nephroma; NOS", - "Polycythemia vera", - "Carcinoma in pleomorphic adenoma", - "Mucinous tubular and spindle cell carcinoma", - "Central neuroblastoma", - "Langerhans cell granulomatosis; unifocal", - "Differentiated penile intraepithelial neoplasia", - "Squamous papilloma", - "Acute myelofibrosis", - "Mucoid carcinoma", - "Subacute lymphoid leukemia", - "Intraductal carcinoma; clinging", - "Chronic lymphoid leukemia", - "Juvenile nevus", - "Lymphoblastic leukemia; NOS", - "Neoplasm; uncertain whether benign or malignant", - "Sweat gland tumor; NOS", - "Atypical lipoma", - "Peripheral T-cell lymphoma; NOS", - "Synovial sarcoma; epithelioid cell", - "Ameloblastic carcinoma", - "Hodgkin lymphoma; lymphocyte depletion; NOS", - "Carcinoma with neuroendocrine differentiation", - "Teratoblastoma; malignant", - "Glucagon-like peptide-producing tumor", - "Angiomyofibroblastoma", - "Adenocarcinoma; diffuse type", - "Mixed small cell carcinoma", - "Intraductal papillary adenocarcinoma; NOS", - "Comedocarcinoma; noninfiltrating", - "Infiltrating papillary adenocarcinoma", - "Condylomatous carcinoma", - "Pilar tumor", - "Chorioadenoma", - "Intravascular B-cell lymphoma", - "Mixed type rhabdomyosarcoma", - "Lymphoproliferative disease; NOS", - "Melanoma; malignant; of soft parts", - "Supratentorial PNET", - "Thymoma; predominantly cortical; malignant", - "Carcinoma; intestinal type", - "Langerhans cell histiocytosis; NOS", - "Lymphangioendothelial sarcoma", - "Enteropathy type intestinal T-cell lymphoma", - "Infiltrating basal cell carcinoma; sclerosing", - "Odontogenic carcinoma", - "Peripheral neuroectodermal tumor", - "Epithelioid cell melanoma", - "Undifferentiated leukaemia", - "Giant cell angiofibroma", - "Fibromyxoma", - "Well differentiated liposarcoma of superficial soft tissue", - "Giant cell sarcoma", - "Fibrous mesothelioma; benign", - "Cystic teratoma; NOS", - "Microcystic urothelial carcinoma", - "Malignant tenosynovial giant cell tumor", - "Hemangiopericytic meningioma", - "Squamous cell carcinoma; HPV-negative", - "Hydroa vacciniforme-like lymphoma", - "Intracystic papillary tumor with high grade entraepithelial neoplasia", - "Acute leukemia; Burkitt type", - "Mixed basal-squamous cell carcinoma", - "Myoepithelial adenoma", - "Cylindroma of skin", - "Lymphoma; NOS", - "Ductal papilloma", - "Langerhans cell histiocytosis; poly-ostotic", - "Hepatocellular adenoma", - "Composite carcinoid", - "Mucinous cystadenoma; borderline malignancy", - "Rathke pouch tumor", - "Pro-B ALL", - "Lymphoepithelioma-like carcinoma", - "Epithelioid cell nevus", - "Leukemic reticuloendotheliosis", - "Acute myeloid leukaemia; t(8;21)(q22;q22)", - "Adrenal cortical adenoma; mixed cell", - "Islet cell adenoma", - "Thymoma; type B2; NOS", - "FAB M1", - "Sertoli-Leydig cell tumor; poorly differentiated; with heterologous elements", - "Sertoli-Leydig cell tumor; NOS", - "Malignant teratoma; undifferentiated", - "Clear cell cystadenofibroma", - "Retinocytoma", - "Osteoblastoma; NOS", - "Acute monoblastic leukemia", - "Fibroblastic meningioma", - "Osteocartilaginous exostosis", - "Sclerosing epithelioid fibrosarcoma", - "Cribriform carcinoma in situ", - "Medulloblastoma; group 4", - "Splenic marginal zone lymphoma; NOS", - "Subependymoma", - "Splenic diffuse red pulp small B-cell lymphoma", - "Acute bilineal leukemia", - "Subependymal glioma", - "B lymphoblastic leukemia/lymphoma with t(12;21)(p13;q22); TEL-AML1 (ETV6-RUNX1)", - "Involuting nevus", - "Islet cell tumor; benign", - "Epithelial-myoepithelial carcinoma", - "Hypernephroma", - "Atypical medullary carcinoma", - "Endometrioid adenofibroma; NOS", - "Not Reported", - "Giant cell sarcoma of bone", - "Aggressive systemic mastocytosis", - "Synovial sarcoma; NOS", - "Adenocarcinoma; NOS", - "Lymphangioleiomyomatosis", - "Angiotropic lymphoma", - "Central odontogenic fibroma", - "Askin tumor", - "Trichilemmoma", - "Spindle cell hemangioendothelioma", - "Oligoastrocytoma", - "Dermal nevus", - "Leiomyofibroma", - "Gemistocytoma", - "GIST; benign", - "Sertoli-Leydig cell tumor; sarcomatoid", - "Embryonal carcinoma; infantile", - "Teratoma; benign", - "Anaplastic astrocytoma; IDH-wildtype", - "Endolymphatic stromal myosis", - "Chordoid glioma of third ventricle", - "Papillotubular adenocarcinoma", - "T lymphoblastic leukemia/lymphoma", - "Fibrous mesothelioma; NOS", - "Giant cell carcinoma", - "Gigantiform cementoma", - "Granulocytic leukemia; NOS", - "Schneiderian carcinoma", - "Mature teratoma", - "Papillary mucinous cystadenoma; borderline malignancy", - "Ameloblastoma; malignant", - "Brenner tumor; malignant", - "Myoepithelioma", - "Mucinous cystadenofibroma of borderline malignancy", - "Rhabdoid meningioma", - "Papilloma; NOS", - "Carcinoid tumor of uncertain malignant potential", - "Sertoli-Leydig cell tumor; well differentiated", - "Follicular thyroid carcinoma (FTC); encapsulated angioinvasive", - "Venous hemangioma", - "Hodgkin lymphoma; mixed cellularity; NOS", - "Atypical follicular adenoma", - "Pindborg tumor", - "Atypical proliferating clear cell tumor", - "Large cell calcifying Sertoli cell tumor", - "Basal cell adenoma", - "Adult T-cell leukemia", - "Chorionepithelioma", - "Islet cell adenomatosis", - "Papillary neoplasm; pancreatobiliary-type; with high grade intraepithelial neoplasia", - "Solitary fibrous tumor", - "Micropapillary carcinoma; NOS", - "Large B-cell lymphoma arising in HHV8-associated multicentric Castleman disease", - "Villous adenoma; NOS", - "Paget disease; mammary", - "Oncocytic Schneiderian papilloma", - "Neurolipocytoma", - "Small congenital nevus", - "Transitional cell carcinoma; micropapillary", - "Traditional sessile serrated adenoma", - "Thymoma; type A; malignant", - "Therapy-related acute myeloid leukemia; NOS", - "Prolymphocytic leukemia; T-cell type", - "B-cell lymphocytic leukemia/small lymphocytic lymphoma", - "Biphenotypic sinonasal sarcoma", - "Follicular adenocarcinoma; moderately differentiated", - "Infiltrating duct adenocarcinoma", - "Adrenal cortical adenoma; clear cell", - "Mucinous cystic neoplasm with high-grade intraepithelial neoplasia", - "Clear cell adenocarcinofibroma", - "Acinar adenocarcinoma; sarcomatoid", - "Fibrolipoma", - "Odontogenic fibroma; NOS", - "T-cell rich large B-cell lymphoma", - "PPNET", - "Arteriovenous hemangioma", - "Prolactinoma", - "Cylindroma; NOS", - "Villous adenocarcinoma", - "Fibrosarcoma; NOS", - "Acute basophilic leukaemia", - "Parafollicular cell carcinoma", - "Follicular carcinoma; minimally invasive", - "Pilomyxoid astrocytoma", - "Thecoma; malignant", - "Thymoma; type AB; NOS", - "Synovioma; benign", - "Classical Hodgkin lymphoma; nodular sclerosis; cellular phase", - "Mixed acinar-endocrine carcinoma", - "Bronchial adenoma; cylindroid", - "Malignant lymphoma; convoluted cell", - "Microcystic adenoma", - "SALT lymphoma", - "Papillocystic adenocarcinoma", - "Aleukemic lymphatic leukemia", - "Insulinoma; NOS", - "Malignant lymphoma; small cleaved cell; follicular", - "Acinar adenoma", - "Spongioblastoma; NOS", - "Sclerosing stromal tumor", - "Theca cell-granulosa cell tumor", - "MGUS", - "Myeloid leukemia associated with Down Syndrome", - "Mucinous cystic tumor with low grade dysplasia", - "Malignant lymphoma; follicular; NOS", - "Acinic cell adenocarcinoma", - "Enteric adenocarcinoma", - "Medullary carcinoma with amyloid stroma", - "Spongioneuroblastoma", - "Infiltrating duct and lobular carcinoma", - "Retinoblastoma; diffuse", - "Spermatocytic seminoma", - "Chromaffinoma", - "Gonocytoma", - "Oligodendroglioma; IDH-mutant and 1p/19q-codeleted", - "Glandular intraepithelial neoplasia; low grade", - "Verrucous carcinoma; NOS", - "Thymoma; medullary; malignant", - "Biliary intraepithelial neoplasia; grade 3", - "Aggressive digital papillary adenoma", - "Intraductal papillary neoplasm; NOS", - "Halo nevus", - "Hodgkin disease; nodular sclerosis; lymphocyte depletion", - "Non-invasive FTP", - "Fibroameloblastic odontoma", - "Glandular papilloma", - "Glioblastoma", - "Dermal and epidermal nevus", - "Invasive carcinoma of no special type", - "Epidermoid carcinoma; large cell; nonkeratinizing", - "Malignant lymphoma; centroblasticcentrocytic; follicular", - "Malignant serous adenofibroma", - "Papillary cystadenoma; borderline malignancy", - "Subacute myeloid leukemia", - "Fibrillary astrocytoma", - "Plasmacytoma; extramedullary", - "Acute myeloid leukemia (megakaryoblastic) with t(1;22)(p13;q13); RBM15-MKL1", - "Enchondroma", - "Duct carcinoma; desmoplastic type", - "Malignant lymphoma; small cleaved cell; diffuse", - "Steroid cell tumor; NOS", - "Mullerian adenosarcoma", - "Terminal duct adenocarcinoma", - "Acute myeloid leukemia; MLL", - "Tumor embolus", - "Alveolar adenoma", - "Lipid-rich Sertoli cell tumor", - "B-ALL", - "Common ALL", - "Cystic mesothelioma; NOS", - "Fibromyxolipoma", - "DIN 3", - "Large cell neuroendocrine carcinoma", - "Plexiform fibrohistiocytic tumor", - "Mesenchymoma; NOS", - "Myofibroma", - "Cloacogenic carcinoma", - "Histiocytoma; NOS", - "Pleomorphic carcinoma", - "MPNST with mesenchymal differentiation", - "Intratubular germ cell neoplasia", - "Digital papillary adenocarcinoma", - "FAB M7", - "Mesenchymoma; malignant", - "Epidermoid carcinoma; keratinizing", - "Angioendothelioma", - "Infantile myofibromatosis", - "Pre-pre-B ALL", - "Papillary carcinoma of thyroid", - "Malignant lymphoma; Hodgkin", - "Mesothelioma; malignant", - "Thymoma; spindle cell; NOS", - "Chordoid glioma", - "Ameloblastic sarcoma", - "Synovioma; NOS", - "Leukemia; NOS", - "Lymphoblastoma", - "Glioblastoma; IDH wildtype", - "Anaplastic large cell lymphoma; CD30+", - "Spindle cell rhabdomyosarcoma", - "Undifferentiated round cell sarcoma", - "Sertoli cell adenoma", - "Papillomatosis; glandular", - "ECL cell carcinoid; malignant", - "Typical carcinoid", - "Meningeal melanocytoma", - "Secondary carcinoma", - "Gastrin cell tumor; malignant", - "Luteinoma", - "Papillary pseudomucinous cystadenoma; NOS", - "Solid papillary carcinoma with invasion", - "Encapsulated follicular variant of papillary thyroid carcinoma; NOS (EFVPTC; NOS)", - "Plasmacytoma; NOS", - "Multiple adenomatous polyps", - "Mesonephric tumor; NOS", - "Malignant lymphoma; lymphocytic; intermediate differentiation; diffuse", - "Splenic B-cell lymphoma/leukemia; unclassifiable", - "Low grade cribriform cystadenocarcinoma (LGCCC)", - "Polypoid adenoma", - "Intraductal papillary adenocarcinoma with invasion", - "Squamous odontogenic tumor", - "Perineurioma; NOS", - "Follicular adenocarcinoma; NOS", - "Glandular intraepithelial neoplasia; grade I", - "Giant osteoid osteoma", - "Pleomorphic liposarcoma", - "Chronic granulocytic leukemia; Philadelphia chromosome (Ph1) positive", - "Anal intraepithelial neoplasia; low grade", - "Cystic hygroma", - "Tubular carcinoid", - "Multifocal superficial basal cell carcinoma", - "Myelodysplastic syndrome with 5q deletion (5q-) syndrome", - "Mucinous cystic neoplasm with an associated invasive carcinoma", - "Vulvar intraepithelial neoplasia; grade III", - "Mesonephroma; malignant", - "Achromic nevus", - "Bednar tumor", - "Mycosis fungoides", - "Chordoid meningioma", - "Mixed germ cell sex cord-stromal tumor; unclassified", - "Trichilemmocarcinoma", - "Pulmonary adenomatosis", - "Esophageal glandular dysplasia (intraepithelial neoplasia); low grade", - "Acute myeloid leukemia with t(9;11)(p22;q23); MLLT3-MLL", - "Myoepithelial tumor", - "Endometrioid carcinoma; NOS", - "Astrocytoma; anaplastic", - "Papillary tumor of the pineal region", - "Follicular fibroma", - "Combined carcinoid and adenocarcinoma", - "Diffuse astrocytoma; IDH-mutant", - "Flat intraepithelial glandular neoplasia; high grade", - "Intraductal adenocarcinoma; noninfiltrating; NOS", - "Adenocarcinoma in adenomatous polyp", - "Solid and cystic tumor", - "Adrenal cortical adenoma; NOS", - "Atypical proliferating serous tumor", - "Chondroma; NOS", - "Intraepithelial carcinoma; NOS", - "Granulosa cell carcinoma", - "Mixed pineal tumor", - "Cystic mesothelioma; benign", - "Ceruminous adenoma", - "Adenocarcinoma in situ in villous adenoma", - "Intraductal papillary carcinoma", - "Hairy cell leukemia variant", - "Phyllodes tumor; malignant", - "Intraductal carcinoma; NOS", - "Multiple neurofibromatosis", - "Water-clear cell adenoma", - "Smooth muscle tumor of uncertain malignant potential", - "Astroblastoma", - "Sertoli-Leydig cell tumor; retiform; with heterologous elements", - "Marginal zone B-cell lymphoma; NOS", - "Endocrine tumor; functioning; NOS", - "Abdominal fibromatosis", - "Hepatoma; malignant", - "Lymphangioma; NOS", - "Meningioma; malignant", - "Intraglandular papillary neoplasm with low grade intraepithelial neoplasia", - "Cutaneous histiocytoma; NOS", - "Schmincke tumor", - "B lymphoblastic leukemia/lymphoma with hyperdiploidy", - "Unclassified tumor; borderline malignancy", - "Thecoma; NOS", - "PEComa; malignant", - "Intraductal papillary mucinous neoplasm with high grade dysplasia", - "Solitary plasmacytoma", - "Neurosarcoma", - "Precursor T-cell lymphoblastic leukemia", - "Small cell carcinoma; fusiform cell", - "Acidophil adenocarcinoma", - "Serous surface papilloma", - "Renomedullary fibroma", - "Fibroid uterus", - "Syringoma; NOS", - "Eosinophil adenocarcinoma", - "Adrenal cortical adenoma; pigmented", - "Odontogenic sarcoma", - "Malignant tumor; fusiform cell type", - "Interstitial cell tumor; malignant", - "Phosphaturic mesenchymal tumor; malignant", - "Follicular dendritic cell tumor", - "Odontogenic fibrosarcoma", - "VAIN III", - "Carcinoma; diffuse type", - "Hodgkin disease; NOS", - "Blastic plasmacytoid dendritic cell neoplasm", - "T-gamma lymphoproliferative disease", - "Nodal marginal zone lymphoma", - "Invasive carcinoma; NST", - "Papillary meningioma", - "Eosinophil carcinoma", - "Endometrial stromal sarcoma; NOS", - "Mixed adenocarcinoma and squamous cell carcinoma", - "Paget disease of breast", - "Oncocytic adenocarcinoma", - "Folliculome lipidique", - "Eosinophilic granuloma", - "Cementoma; NOS", - "Malignant lymphoma; lymphocytic; poorly differentiated; nodular", - "Hidradenoma papilliferum", - "Urothelial carcinoma with trophoblastic differentiation", - "Malignant lymphoma; large cell; cleaved; diffuse", - "Epithelioid leiomyoma", - "High grade surface osteosarcoma", - "Myxoma; NOS", - "Metanephric adenoma", - "Embryonal sarcoma", - "Small cell neuroendocrine carcinoma", - "Papillary pseudomucinous cystadenocarcinoma", - "Aleukemic leukemia; NOS", - "Histiocyte-rich large B-cell lymphoma", - "Bile duct cystadenocarcinoma", - "Spindle cell carcinoma; NOS", - "Endometrioid adenoma; NOS", - "Carcinoid tumor; argentaffin; NOS", - "Inflammatory liposarcoma", - "Papillary transitional cell carcinoma", - "Primary serous papillary carcinoma of peritoneum", - "Verrucous keratotic hemangioma", - "Hutchinson melanotic freckle; NOS", - "Metaplastic carcinoma with osseous differentiation", - "Reticulosarcoma; NOS", - "Adenocarcinoma of anal ducts", - "Acute myeloid leukemia with t(8;21)(q22;q22); RUNX1-RUNX1T1", - "Malignant teratoma; trophoblastic", - "Subepidermal nodular fibrosis", - "Schneiderian papilloma; NOS", - "Invasive lobular carcinoma; tubulolobular variant", - "Adenoid basal carcinoma", - "B lymphoblastic leukemia/lymphoma with t(v;11q23); MLL rearranged", - "Pancreatic peptide and pancreatic peptide-like peptide within terminal tyrosine amide producing tumor", - "Malignant mastocytoma", - "Pilomatrixoma; NOS", - "Renal medullary carcinoma", - "Rhabdomyosarcoma; NOS", - "RAEB-T", - "Hydatid mole", - "Preleukemia", - "Retinoblastoma; undifferentiated", - "Liposarcoma; differentiated", - "Juvenile fibroadenoma", - "Pituitary adenoma; NOS", - "Acute mixed lineage leukemia", - "Odontogenic tumor; NOS", - "Adenocarcinoma with apocrine metaplasia", - "Carcinoma showing thymus-like differentiation", - "Granulosa cell tumor; NOS", - "Epithelioid mesothelioma; malignant", - "Myelodysplastic syndrome; NOS", - "Epithelioid hemangioendothelioma; NOS", - "Invasive mole; NOS", - "Pancreatobiliary neoplasm; non-invasive", - "Gastrointestinal stromal tumor; uncertain malignant potential", - "Epithelioid MPNST", - "Merkel cell tumor", - "Follicular lymphoma; grade 3A", - "Precursor cell lymphoblastic lymphoma; NOS", - "Thymic carcinoma with adenoid cystic carcinoma-like features", - "Merkel cell carcinoma", - "Lactating adenoma", - "Eccrine cystadenoma", - "Round cell osteosarcoma", - "Medulloblastoma; non-WNT/non-SHH", - "Malignant lymphoma; follicle center; follicular", - "Acidophil carcinoma", - "Apudoma", - "Melanotic MPNST", - "Intraductal papilloma", - "Mucinous cystadenoma; NOS", - "Intracystic papillary neoplasm with low grade intraepithelial neoplasia", - "B lymphoblastic leukemia/lymphoma with hypodiploidy (Hypodiploid ALL)", - "Cutaneous lymphoma; NOS", - "Follicular lymphoma; small cleaved cell", - "Mantle zone lymphoma", - "Myelofibrosis as a result of myeloproliferative disease", - "Neurinomatosis", - "Sebaceous adenocarcinoma", - "Melanoma; NOS", - "Germinoma", - "Large cell (Ki-1+) lymphoma", - "Basal cell tumor", - "Chronic myelocytic leukemia; NOS", - "Malignant lymphoma; follicle center; NOS", - "Angiocentric T-cell lymphoma", - "Malignant lymphoma; small cell; NOS", - "Clear cell odontogenic tumor", - "Botryoid sarcoma", - "Transitional cell carcinoma", - "Carcinoma with chondroid differentiation", - "Acute lymphoid leukemia", - "Tumor; metastatic", - "Plasma cell leukemia", - "Non-Hodgkin lymphoma; NOS", - "Melanocytic nevus", - "Cholangioma", - "Dermoid cyst; NOS", - "Cystic lymphangioma", - "Lymphangiomyoma", - "Apocrine adenocarcinoma", - "Adenocarcinoma in villous adenoma", - "Plasma cell tumor", - "Subacute granulocytic leukemia", - "Transitional carcinoma", - "Papillary squamous cell carcinoma in situ", - "Neurilemoma; malignant", - "Serous borderline tumor-micropapillary variant", - "Mucinous cystic tumor with intermediate dysplasia", - "Mastocytoma; NOS", - "Acute myeloid leukemia with mutated NPM1", - "Adenocarcinoma in situ in a polyp; NOS", - "Adamantinoma; malignant", - "Primary cutaneous DLBCL; leg type", - "Intravascular bronchial alveolar tumor", - "Tubulocystic renal cell carcinoma", - "Adenocarcinoma in situ in tubular adenoma", - "Osteoblastoma; malignant", - "Malignant lymphoma; histiocytic; NOS", - "Tubulolobular carcinoma", - "Angiolipoma; NOS", - "Mixed embryonal rhabdomyosarcoma and alveolar rhabdomyosarcoma", - "Mixed medullary-papillary carcinoma", - "Mesenteric fibromatosis", - "Intracystic papilloma", - "Odontogenic tumor; benign", - "Epithelioid mesothelioma; benign", - "Bronchiolar adenocarcinoma", - "Squamous papillomatosis", - "Juvenile carcinoma of breast", - "Immunoglobulin deposition disease", - "Bellini duct carcinoma", - "Lymphoplasmacyte-rich meningioma", - "Serous surface papillary tumor of borderline malignancy", - "ECL cell carcinoid; NOS", - "Malignant lymphoma; large cell; NOS", - "Periductal stromal tumor; low grade", - "Bronchiolar carcinoma", - "Ductal carcinoma in situ; NOS", - "Kaposi sarcoma", - "Fibrous meningioma", - "Dermatofibrosarcoma; NOS", - "Burkitt-like lymphoma", - "Classical Hodgkin lymphoma; nodular sclerosis; grade 1", - "Follicular adenoma; oxyphilic cell", - "Nodular hidradenoma", - "Thecoma; luteinized", - "Tubular androblastoma with lipid storage", - "Elastofibroma", - "Eccrine poroma; malignant", - "Desmoid; NOS", - "Phyllodes tumor; borderline", - "Monomorphic adenoma", - "Alpha cell tumor; NOS", - "Therapy related myeloid neoplasm", - "Mixed embryonal carcinoma and teratoma", - "Alveolar adenocarcinoma", - "MALT lymphoma", - "Melanoma in situ", - "Nonencapsulated sclerosing tumor", - "Fibroblastic liposarcoma", - "Eccrine poroma", - "Meningiomatosis; NOS", - "Acinar cell carcinoma", - "Sertoli-Leydig cell tumor of intermediate differentiation", - "Acute myeloid leukemia; t(16;16)(p 13;q 11)", - "Myelodysplastic syndrome; unclassifiable", - "Urachal carcinoma", - "FAB L2", - "Epithelioma; malignant", - "MiT family translocation renal cell carcinoma", - "Langerhans cell histiocytosis; multifocal", - "Indolent systemic mastocytosis", - "Acute myeloid leukemia with inv(3)(q21q26.2) or t(3;3)(q21;q26.2); RPN1-EVI1", - "Reticulum cell sarcoma; NOS", - "Hurthle cell tumor", - "Malignant lymphoma; centroblastic; diffuse", - "Papillary syringadenoma", - "Hodgkin lymphoma; lymphocyte depletion; diffuse fibrosis", - "Malignant lymphoma; mixed cell type; follicular", - "Mucinous cystadenocarcinoma; non-invasive" - ] - }, - "Individual Therapeutic Agent": { - "enum": [ - "cis-Urocanic Acid", - "PIM Kinase Inhibitor SGI-1776", - "Bryostatin 1", - "Polymeric Camptothecin Prodrug XMT-1001", - "Rilimogene Galvacirepvec", - "Tyrosinase-KLH", - "Anti-HB-EGF Monoclonal Antibody KHK2866", - "EGFR Antagonist Hemay022", - "Pazopanib", - "Oleandrin", - "Curcumin", - "Iodine I 131 Monoclonal Antibody G-250", - "Ponatinib", - "Tecogalan Sodium", - "Duvelisib", - "Monoclonal Antibody AbGn-7", - "NA17-A Antigen", - "3'-C-ethynylcytidine", - "Interferon Beta-1A", - "Wnt Signaling Inhibitor SM04755", - "Apalutamide", - "Elesclomol", - "Autologous Tumor Infiltrating Lymphocytes LN-145", - "Tirabrutinib", - "Rofecoxib", - "Recombinant Human Papillomavirus 11-valent Vaccine", - "Avelumab", - "hTERT Vaccine V934/V935", - "Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201", - "Polyethylene Glycol Recombinant Endostatin", - "MDM2 Antagonist RO6839921", - "BMS-188797", - "Liposome-encapsulated OSI-7904", - "Vilaprisan", - "HER2-directed TLR8 Agonist SBT6050", - "Ascrinvacumab", - "Fluzoparib", - "Antisense Oligonucleotide QR-313", - "Autologous TCR-engineered T-cells IMA201", - "Monoclonal Antibody CAL", - "Porcupine Inhibitor WNT974", - "Monoclonal Antibody E2.3", - "TLR7 Agonist 852A", - "Puquitinib", - "Mercaptopurine Oral Suspension", - "Nucleotide Analog Prodrug NUC-3373", - "Pegylated Liposomal Belotecan", - "Amustaline", - "Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128", - "Anti-FCRH5/CD3 BiTE Antibody BFCR4350A", - "Sorafenib Tosylate", - "Pyrazinamide", - "Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370", - "Simotaxel", - "BTK Inhibitor ICP-022", - "Selumetinib", - "Suramin Sodium", - "Degarelix", - "Cirmtuzumab", - "Daporinad", - "MEK Inhibitor CI-1040", - "Vadacabtagene Leraleucel", - "Chlorambucil", - "BRD4 Inhibitor PLX2853", - "mTOR Kinase Inhibitor PP242", - "Mosunetuzumab", - "Paclitaxel Ceribate", - "Telisotuzumab", - "Anti-PD-1 Checkpoint Inhibitor PF-06801591", - "Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a", - "Bizelesin", - "Macitentan", - "Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome", - "Anti-CD25-PBD Antibody-drug Conjugate ADCT-301", - "Pralsetinib", - "Anti-PD-L1 Monoclonal Antibody MSB2311", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088", - "STING-expressing E. coli SYNB1891", - "Autologous CD19-targeted CAR T Cells CC-97540", - "Raltitrexed", - "Glesatinib", - "Valemetostat", - "Sonolisib", - "Ashwagandha Root Powder Extract", - "Allosteric ErbB Inhibitor BDTX-189", - "Alkotinib", - "Glutaminase Inhibitor CB-839 Hydrochloride", - "Moxetumomab Pasudotox", - "Nucleotide Analogue GS 9219", - "Sagopilone", - "Gamma-delta Tocotrienol", - "MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP", - "CD11b Agonist GB1275", - "Polo-like Kinase 1 Inhibitor GSK461364", - "FAP/4-1BB-targeting Fusion Protein RO7122290", - "Anti-TIM-3 Monoclonal Antibody Sym023", - "Indoximod", - "Lobaplatin", - "Nocodazole", - "RORgamma Agonist LYC-55716", - "Zinostatin Stimalamer", - "Anti-5T4 Antibody-Drug Conjugate PF-06263507", - "Panitumumab", - "MET Tyrosine Kinase Inhibitor BMS-777607", - "AKT Inhibitor ARQ 092", - "MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201", - "PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231", - "Celecoxib", - "Molibresib", - "Survivin Antigen", - "Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP", - "Oncolytic Newcastle Disease Virus Strain PV701", - "Gemcitabine Prodrug LY2334737", - "Telomerase Inhibitor FJ5002", - "Dromostanolone Propionate", - "Sapitinib", - "NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301", - "Anti-TAG-72 Monoclonal Antibody scFV CC-49/218", - "Daratumumab", - "Lifirafenib", - "Pegilodecakin", - "Galamustine", - "Sintilimab", - "Anti-alpha5beta1 Integrin Antibody MINT1526A", - "Daunorubicin", - "Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999", - "Mofarotene", - "Anti-CLEVER-1 Monoclonal Antibody FP-1305", - "Drozitumab", - "VEGFR2 Tyrosine Kinase Inhibitor PF-00337210", - "Autologous Anti-BCMA CAR T-cells PHE885", - "Azintuxizumab Vedotin", - "Crenolanib Besylate", - "Agonistic Anti-OX40 Monoclonal Antibody MEDI6469", - "Mivavotinib", - "Pegylated Recombinant Human Arginase I BCT-100", - "Capmatinib", - "Goserelin", - "Peplomycin Sulfate", - "Encelimab", - "Ixazomib Citrate", - "JAK Inhibitor", - "Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001", - "CD4-specific Telomerase Peptide Vaccine UCPVax", - "Urokinase-Derived Peptide A6", - "Factor VIIa Inhibitor PCI-27483", - "Mixed Bacteria Vaccine", - "Anti-PD-1 Monoclonal Antibody MGA012", - "Mivobulin", - "Vorasidenib", - "Anti-EGFR Monoclonal Antibody CPGJ 602", - "Edelfosine", - "Poziotinib", - "Immunomodulator LAM-003", - "Bexarotene", - "Serine/Threonine Kinase Inhibitor XL418", - "DNA-dependent Protein Kinase Inhibitor VX-984", - "Dioscorea nipponica Makino Extract DNE3", - "BiTE Antibody AMG 910", - "Mirdametinib", - "Acodazole Hydrochloride", - "HDAC Class I/IIb Inhibitor HG146", - "Pamidronic Acid", - "Everolimus", - "Talacotuzumab", - "BCG Solution", - "Selective Estrogen Receptor Degrader AZD9833", - "Semustine", - "T900607", - "Azaserine", - "Recombinant Interferon Alfa-2a", - "Anti-CD33 Antibody-drug Conjugate IMGN779", - "AutologousLMP1/LMP2/EBNA1-specificHLA-A02", - "Recombinant Modified Vaccinia Ankara-5T4 Vaccine", - "HER2 Inhibitor TAS0728", - "Tesevatinib", - "Genistein", - "Bushen-Jianpi Decoction", - "Beta-Glucan MM-10-001", - "Combretastatin A-1", - "Ralaniten Acetate", - "Pterostilbene", - "Sodium Butyrate", - "Beta-lapachone Prodrug ARQ 761", - "Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439", - "Monoclonal Antibody D6.12", - "Dexamethason", - "Multi-epitope HER2 Peptide Vaccine H2NVAC", - "Betaglucin Gel", - "CDK4 Inhibitor P1446A-05", - "Pan-TRK Inhibitor ONO-7579", - "Tebentafusp", - "TLR8 Agonist DN1508052", - "MDM2 Inhibitor AMG-232", - "Monoclonal Antibody GD2 Anti-Idiotype Vaccine", - "Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S", - "Bazlitoran", - "Belotecan Hydrochloride", - "Lyso-Thermosensitive Liposome Doxorubicin", - "Mesna", - "Oxidative Phosphorylation Inhibitor IM156", - "Recombinant Adenovirus-p53 SCH-58500", - "LSD1 Inhibitor CC-90011", - "Anti-ICOS Monoclonal Antibody KY1044", - "Menogaril", - "Ortataxel", - "Sialyl Tn-KLH Vaccine", - "Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01", - "Modakafusp Alfa", - "Anti-TIGIT Monoclonal Antibody BGB-A1217", - "Vandetanib", - "Anti-CD19 Monoclonal Antibody MDX-1342", - "Adagloxad Simolenin", - "PI3Kdelta Inhibitor GS-9901", - "Goserelin Acetate Extended-release Microspheres LY01005", - "Dezaguanine Mesylate", - "Anti-5T4 Antibody-drug Conjugate ASN004", - "Gefitinib", - "Globo H-DT Vaccine OBI-833", - "Aurora A Kinase Inhibitor LY3295668 Erbumine", - "Roneparstat", - "Ketoconazole", - "Ponatinib Hydrochloride", - "2-Deoxy-D-glucose", - "Aspacytarabine", - "Hsp90 Inhibitor Debio 0932", - "Imetelstat", - "Recombinant Macrophage Colony-Stimulating Factor", - "Chlorodihydropyrimidine", - "Gallium-based Bone Resorption Inhibitor AP-002", - "Gatipotuzumab", - "Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM", - "Gilteritinib", - "PD-L1 Inhibitor GS-4224", - "Rosabulin", - "Selatinib Ditosilate", - "Monoclonal Antibody NEO-201", - "Bispecific Antibody AGEN1223", - "Selective Estrogen Receptor Degrader LY3484356", - "Ublituximab", - "Triamcinolone Acetonide", - "MET x MET Bispecific Antibody REGN5093", - "HuaChanSu", - "Antimetabolite FF-10502", - "BCMA/CD3e Tri-specific T-cell Activating Construct HPN217", - "Anti-OFA Immunotherapeutic BB-MPI-03", - "Relugolix", - "Sipuleucel-T", - "Enclomiphene Citrate", - "8-Azaguanine", - "Inebilizumab", - "KRN5500", - "Lucatumumab", - "13-Deoxydoxorubicin", - "mTOR1/2 Kinase Inhibitor ME-344", - "Lanreotide Acetate", - "Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022", - "Pemetrexed", - "Docetaxel/Ritonavir", - "HPV E6/E7 DNA Vaccine GX-188E", - "Aclacinomycin B", - "Gandotinib", - "Smac Mimetic GDC-0917", - "PPAR Alpha Antagonist TPST-1120", - "Mcl-1 Inhibitor MIK665", - "Iroplact", - "Trebananib", - "Liposomal Bcl-2 Antisense Oligonucleotide BP1002", - "Amsilarotene", - "Leflunomide", - "Teglarinad", - "Protein Arginine Methyltransferase 5 Inhibitor PRT543", - "Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa", - "Muscadine Grape Extract", - "DNA-PK inhibitor AZD7648", - "Xevinapant", - "Tris-acryl Gelatin Microspheres", - "Gonadotropin-releasing Hormone Analog", - "Picoplatin", - "Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841", - "Retaspimycin", - "PVA Microporous Hydrospheres/Doxorubicin Hydrochloride", - "Nab-paclitaxel/Rituximab-coated Nanoparticle AR160", - "Prednimustine", - "Ziv-Aflibercept", - "APE1/Ref-1 Redox Inhibitor APX3330", - "AE37 Peptide/GM-CSF Vaccine", - "Polymer-encapsulated Luteolin Nanoparticle", - "Levothyroxine", - "Dovitinib Lactate", - "Anti-CEA BiTE Monoclonal Antibody AMG211", - "Recombinant Interferon Alpha 2b-like Protein", - "Selinexor", - "Short Chain Fatty Acid HQK-1004", - "Ranimustine", - "Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207", - "Anti-TIGIT Monoclonal Antibody OMP-313M32", - "Sitravatinib", - "Troxacitabine", - "7-Cyanoquinocarcinol", - "Anti-CD137 Agonistic Monoclonal Antibody LVGN6051", - "Capivasertib", - "Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1)", - "Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b", - "HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202", - "STING Agonist SB 11285", - "Geranylgeranyltransferase I Inhibitor", - "Actinomycin C3", - "Methotrexate Sodium", - "Recombinant Tumor Necrosis Factor-Alpha", - "PI3K-gamma Inhibitor IPI-549", - "Recombinant Granulocyte-Macrophage Colony-Stimulating Factor", - "Indibulin", - "JAK1 Inhibitor AZD4205", - "Aerosolized Aldesleukin", - "2;6-Dimethoxyquinone", - "Mureletecan", - "Recombinant Bacterial Minicells VAX014", - "Interferon Gamma-1b", - "Hsp90 Inhibitor XL888", - "Levoleucovorin Calcium", - "DI-Leu16-IL2 Immunocytokine", - "Enasidenib", - "Olaratumab", - "Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine", - "Anti-TIM3 Monoclonal Antibody LY3321367", - "Anti-MUC1 Monoclonal Antibody BTH1704", - "Autologous Mesenchymal Stem Cells Apceth_101", - "Iodine I 131 Omburtamab", - "Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1", - "HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001", - "Berzosertib", - "Rolinsatamab Talirine", - "Samrotamab Vedotin", - "Autologous Anti-CD19 T-cell Receptor T cells ET190L1", - "Cofetuzumab Pelidotin", - "Amrubicin", - "Onvatilimab", - "Asulacrine", - "CDK9 Inhibitor AZD4573", - "Belagenpumatucel-L", - "Bendamustine Hydrochloride", - "Azaribine", - "Oprozomib", - "Phenethyl Isothiocyanate", - "Platinum", - "Iodine I-131", - "Broad-Spectrum Human Papillomavirus Vaccine V505", - "Notch Signaling Pathway Inhibitor MK0752", - "Porfiromycin", - "TrkA Inhibitor VMD-928", - "Plinabulin", - "MEK Inhibitor AZD8330", - "Vinzolidine", - "Sodium Dichloroacetate", - "Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A", - "Liposome-encapsulated miR-34 Mimic MRX34", - "EGFR/FLT3/Abl Inhibitor SKLB1028", - "Oncolytic Newcastle Disease Virus MEDI5395", - "Tasadenoturev", - "Anti-CD73 Monoclonal Antibody BMS-986179", - "Leuprolide Mesylate Injectable Suspension", - "Suramin", - "Axicabtagene Ciloleucel", - "JAK Inhibitor INCB047986", - "Leucovorin Calcium", - "Anti-DR5 Agonist Monoclonal Antibody TRA-8", - "Amcasertib", - "Aminoflavone Prodrug AFP464", - "Anti-PLGF Monoclonal Antibody TB-403", - "Mechlorethamine Hydrochloride Gel", - "Carbon C 14-pamiparib", - "Oncolytic Virus RP1", - "Amolimogene Bepiplasmid", - "Intiquinatine", - "pan FGFR Inhibitor PRN1371", - "Procarbazine", - "Etanercept", - "Luminespib", - "Recombinant Erythropoietin", - "Agerafenib", - "Favezelimab", - "Anti-c-Met Monoclonal Antibody ABT-700", - "Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126", - "Cabiralizumab", - "Hexamethylene Bisacetamide", - "Sugemalimab", - "Anti-PD-1 Fusion Protein AMP-224", - "Multikinase Inhibitor SAR103168", - "Oral Milataxel", - "Talimogene Laherparepvec", - "Tidutamab", - "Temsirolimus", - "Ulocuplumab", - "Bi-functional Alkylating Agent VAL-083", - "Telaglenastat Hydrochloride", - "Pexmetinib", - "Anti-PD-1/CTLA-4 Bispecific Antibody AK104", - "Ubidecarenone Nanodispersion BPM31510n", - "Lm-tLLO-neoantigens Vaccine ADXS-NEO", - "LMB-1 Immunotoxin", - "Mannosulfan", - "Anti-LAG-3 Monoclonal Antibody IBI-110", - "Vincristine Liposomal", - "Hexylresorcinol", - "Pyrotinib", - "Bruceanol E", - "Anti-prolactin Receptor Antibody LFA102", - "Pentostatin", - "PI3K Inhibitor GDC-0084", - "BXQ-350 Nanovesicle Formulation", - "Adenosine A2A Receptor Antagonist CS3005", - "Bcr-Abl Kinase Inhibitor PF-114", - "Buserelin", - "Sotorasib", - "Oxaliplatin", - "Pegylated Liposomal Mitomycin C Lipid-based Prodrug", - "Iobenguane I-131", - "Autologous BCMA-targeted CAR T Cells LCAR-B4822M", - "EP2/EP4 Antagonist TPST-1495", - "TLR7 agonist BNT411", - "Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001", - "MET Tyrosine Kinase Inhibitor SAR125844", - "Diaziquone", - "SRPK1/ABCG2 Inhibitor SCO-101", - "Verubulin", - "Phosphorodiamidate Morpholino Oligomer AVI-4126", - "Tubulin Inhibitor ALB 109564 Dihydrochloride", - "Idronoxil Suppository NOX66", - "Radioactive Iodine", - "Phosphorus P-32", - "Liposomal SN-38", - "Mitoclomine", - "Menatetrenone", - "Oral Aminolevulinic Acid Hydrochloride", - "Zelavespib", - "VLP-encapsulated TLR9 Agonist CMP-001", - "Otlertuzumab", - "Benaxibine", - "EGFR Inhibitor BIBX 1382", - "Aphidicoline Glycinate", - "Cord Blood-derived Expanded Natural Killer Cells PNK-007", - "Anhydrovinblastine", - "Belzutifan", - "Glofitamab", - "Anaxirone", - "Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME", - "IL-12-expressing HSV-1 NSC 733972", - "Larotaxel", - "Multi-mode Kinase Inhibitor EOC317", - "ssRNA-based Immunomodulator CV8102", - "Anti-PD-L1 Monoclonal Antibody IMC-001", - "Membrane-Disrupting Peptide EP-100", - "Fosgemcitabine Palabenamide", - "Laprituximab Emtansine", - "Anti-CCR7 Antibody-drug Conjugate JBH492", - "Tankyrase Inhibitor STP1002", - "Recombinant Human TRAIL-Trimer Fusion Protein SCB-313", - "Selective Glucocorticoid Receptor Antagonist CORT125281", - "BTK Inhibitor LOXO-305", - "MDM2 Antagonist ASTX295", - "Busulfan", - "Isatuximab", - "Leurubicin", - "Cycloleucine", - "Dexamethasone Sodium Phosphate", - "Naratuximab Emtansine", - "Carboxyamidotriazole Orotate", - "Alpha-Thioguanine Deoxyriboside", - "Ocrelizumab", - "Cactinomycin", - "Refametinib", - "Vinorelbine Tartrate Emulsion", - "Epothilone KOS-1584", - "Tolnidamine", - "AXL/ FLT3/VEGFR2 Inhibitor KC1036", - "IDO-1 Inhibitor LY3381916", - "Aprinocarsen", - "ITK Inhibitor CPI-818", - "Mycobacterium w", - "Atamestane", - "JAK2/Src Inhibitor NS-018", - "Zalcitabine", - "Amonafide L-Malate", - "Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes", - "Doxorubicin-loaded EGFR-targeting Nanocells", - "Liposomal Vinorelbine Tartrate", - "Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1", - "Abemaciclib Mesylate", - "Radix Angelicae Sinensis/Radix Astragali Herbal Supplement", - "Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704", - "Doxorubicin-HPMA Conjugate", - "Relacorilant", - "Platinum Compound", - "Antibody-drug Conjugate ABBV-011", - "Ningetinib Tosylate", - "Topical Fluorouracil", - "Uprosertib", - "IDH1(R132) Inhibitor IDH305", - "ALK-FAK Inhibitor CEP-37440", - "Noscapine", - "Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01", - "Anti-CTLA-4 Monoclonal Antibody ONC-392", - "Anti-ICOS Agonist Monoclonal Antibody BMS-986226", - "Tavokinogene Telseplasmid", - "Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999", - "Samarium Sm 153-DOTMP", - "Crenolanib", - "White Carrot", - "Pyroxamide", - "Anti-CD123 Monoclonal Antibody KHK2823", - "Digoxin", - "Colloidal Gold-Bound Tumor Necrosis Factor", - "Colorectal Tumor-Associated Peptides Vaccine IMA910", - "Ovapuldencel-T", - "LRP5 Antagonist BI 905681", - "Pacmilimab", - "Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718", - "Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120", - "MCL-1 Inhibitor AMG 176", - "Golnerminogene Pradenovec", - "Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01", - "Integrin Receptor Antagonist GLPG0187", - "Asaley", - "Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine", - "Retifanlimab", - "Nimustine Hydrochloride", - "Threonine Tyrosine Kinase Inhibitor CFI-402257", - "Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752", - "CXCR2 Antagonist QBM076", - "Tyrosine Kinase Inhibitor TL-895", - "Polyvalent Melanoma Vaccine", - "Lomustine", - "Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A", - "CXCR4 Antagonist BL-8040", - "Anti-CA6-DM4 Immunoconjugate SAR566658", - "Brivudine", - "Dubermatinib", - "CDK7 Inhibitor SY-5609", - "Bromacrylide", - "Oncolytic Virus ASP9801", - "Guadecitabine", - "Nimodipine", - "Aviscumine", - "Sulforaphane", - "JAK2 Inhibitor XL019", - "Copper Gluconate", - "Futibatinib", - "Anti-c-KIT Monoclonal Antibody CDX 0158", - "mTOR Kinase Inhibitor CC-223", - "Zinc Finger Nuclease ZFN-758", - "Iproplatin", - "Aminocamptothecin", - "Mitosis Inhibitor T 1101 Tosylate", - "11D10 AluGel Anti-Idiotype Monoclonal Antibody", - "Cemadotin", - "Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240", - "Procarbazine Hydrochloride", - "Multikinase Inhibitor AT9283", - "Autologous Tumor Infiltrating Lymphocytes LN-144", - "ALK Inhibitor RO5424802", - "Binimetinib", - "Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo", - "Letolizumab", - "Seliciclib", - "Cevipabulin", - "Efizonerimod", - "Octreotide Pamoate", - "Isotretinoin", - "PTEF-b/CDK9 Inhibitor BAY1251152", - "Androgen Receptor Antagonist TRC253", - "Asulacrine Isethionate", - "Tucotuzumab Celmoleukin", - "Pan-TRK Inhibitor NOV1601", - "Eftozanermin Alfa", - "Antibody-drug Conjugate ABBV-155", - "Mitomycin B", - "Abexinostat Tosylate", - "Crystalline Genistein Formulation AXP107-11", - "BET Inhibitor INCB054329", - "MDM2 Antagonist RO5045337", - "Praluzatamab Ravtansine", - "HER2-targeting Antibody Fc Fragment FS102", - "Transferrin Receptor-Targeted Liposomal p53 cDNA", - "Recombinant Tyrosinase-Related Protein-2", - "MET Tyrosine Kinase Inhibitor EMD 1204831", - "Anti-PD-L1 Monoclonal Antibody BGB-A333", - "Neratinib", - "p70S6K/Akt Inhibitor MSC2363318A", - "Anti-Denatured Collagen Monoclonal Antibody TRC093", - "Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306", - "Anti-TIGIT Monoclonal Antibody COM902", - "Prostaglandin E2 EP4 Receptor Inhibitor E7046", - "Carzelesin", - "Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014", - "Iboctadekin", - "Tozasertib Lactate", - "ncmtRNA Oligonucleotide Andes-1537", - "Nicotinamide Riboside", - "Rilimogene Galvacirepvec/Rilimogene Glafolivec", - "Enoticumab", - "Dostarlimab", - "Opioid Growth Factor", - "Anti-A33 Monoclonal Antibody KRN330", - "Domatinostat", - "Anti-PD-1 Monoclonal Antibody Sym021", - "IDO1 Inhibitor PF-06840003", - "Linperlisib", - "Napabucasin", - "Immunotherapeutic Combination Product CMB305", - "Tyrosine Kinase Inhibitor OSI-930", - "Zibotentan", - "Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424", - "Trans Sodium Crocetinate", - "MAT2A Inhibitor AG-270", - "CDC7 Kinase Inhibitor BMS-863233", - "Belvarafenib", - "Bosutinib Monohydrate", - "Anti-Glypican 3/CD3 Bispecific Antibody ERY974", - "Engineered Toxin Body Targeting CD38 TAK-169", - "FAK Inhibitor PF-00562271", - "Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360", - "Anti-APRIL Monoclonal Antibody BION-1301", - "Pegdinetanib", - "Roblitinib", - "Hydroxyurea", - "Iodine I 131 Ethiodized Oil", - "Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H", - "Anti-FAP/Interleukin-2 Fusion Protein RO6874281", - "Tamoxifen Citrate", - "Tezacitabine", - "Milk Thistle", - "IDO1/TDO2 Inhibitor M4112", - "Prohibitin-Targeting Peptide 1", - "Tinostamustine", - "Cisplatin", - "Pancratistatin", - "Gedatolisib", - "Androgen Receptor Antagonist BAY 1161116", - "Dusigitumab", - "Anti-CD47 Monoclonal Antibody AO-176", - "p53-HDM2 Interaction Inhibitor MI-773", - "Ciltacabtagene Autoleucel", - "Anti-Met/EGFR Monoclonal Antibody LY3164530", - "HER2-targeted DARPin MP0274", - "RET Mutation/Fusion Inhibitor BLU-667", - "Lapachone", - "MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1", - "Abiraterone", - "Fenebrutinib", - "Photosensitizer LUZ 11", - "BET Bromodomain Inhibitor ZEN-3694", - "Ethaselen", - "Anti-IGF-1R Monoclonal Antibody AVE1642", - "Satraplatin", - "Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter", - "Synthetic Hypericin", - "Colorectal Cancer Peptide Vaccine PolyPEPI1018", - "Melapuldencel-T", - "CXCR4 Antagonist USL311", - "Buthionine Sulfoximine", - "Azathioprine", - "FLT3/ABL/Aurora Kinase Inhibitor KW-2449", - "Carubicin Hydrochloride", - "Temarotene", - "Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells", - "Oregovomab", - "Ripertamab", - "Pasireotide", - "Recombinant Transforming Growth Factor-Beta-2", - "Linrodostat", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053", - "Anti-CD38 Antibody-drug Conjugate STI-6129", - "Anti-EGFRvIII Immunotoxin MR1-1", - "Bisnafide", - "Flotetuzumab", - "Vinzolidine Sulfate", - "Cedefingol", - "DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine", - "Src/tubulin Inhibitor KX02", - "Taminadenant", - "Loncastuximab Tesirine", - "Lyophilized Black Raspberry Lozenge", - "Dianhydrogalactitol", - "pan-RAF Kinase Inhibitor TAK-580", - "mTOR Inhibitor GDC-0349", - "Bendamustine-containing Nanoparticle-based Formulation RXDX-107", - "Nilutamide", - "Selective Estrogen Receptor Degrader LSZ102", - "Seribantumab", - "Opaganib", - "Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020", - "Tin Ethyl Etiopurpurin", - "Metatinib Tromethamine", - "Tyrosinase Peptide", - "Burixafor", - "Mafosfamide", - "Oligonucleotide SPC2996", - "Belantamab Mafodotin", - "Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1", - "Bisthianostat", - "Treosulfan", - "Coxsackievirus A21", - "Black Raspberry Nectar", - "CXCR1/2 Inhibitor SX-682", - "Combretastatin A1 Diphosphate", - "unknown", - "CAB-ROR2-ADC BA3021", - "Epratuzumab", - "Fostriecin", - "Mitomycin C Analog KW-2149", - "Thiodiglycol", - "Dolastatin 15", - "Atiprimod", - "Riviciclib", - "Ganoderma lucidum Spores Powder Capsule", - "Naxitamab", - "Autologous Genetically-modified MAGE-A4 C1032 T Cells", - "DNMT1 Inhibitor NTX-301", - "Lentinan", - "Antibody-drug Conjugate ABBV-176", - "BRAF/EGFR Inhibitor BGB-283", - "cFMS Tyrosine Kinase Inhibitor ARRY-382", - "Triethylenemelamine", - "Doxercalciferol", - "Activin Type 2B Receptor Fc Fusion Protein STM 434", - "Anti-CD47 Monoclonal Antibody IMC-002", - "Tomivosertib", - "Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A", - "Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801", - "Anti-HER2 Antibody-drug Conjugate RC48", - "Ursolic Acid", - "Yttrium Y 90 Monoclonal Antibody B3", - "Anti-PD-L1 Monoclonal Antibody TG-1501", - "Anti-HER2 Monoclonal Antibody HLX22", - "Herba Scutellaria Barbata", - "Enpromate", - "Bomedemstat", - "Amustaline Dihydrochloride", - "Survivin mRNA Antagonist EZN-3042", - "Avitinib Maleate", - "Geldanamycin", - "SERD SAR439859", - "Verapamil", - "alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801", - "TRPV6 Calcium Channel Inhibitor SOR-C13", - "Entospletinib", - "Mutant IDH1 Inhibitor DS-1001", - "Retinyl Palmitate", - "Polyamine Analogue SBP-101", - "Carmustine Implant", - "Rabusertib", - "MAGE-10.A2", - "Hydroxytyrosol", - "Anti-TF Monoclonal Antibody ALT-836", - "Erlotinib Hydrochloride", - "Aurora Kinase Inhibitor PF-03814735", - "Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428", - "BL22 Immunotoxin", - "Dacarbazine", - "CDK4/6 Inhibitor CS3002", - "Dihydroorotate Dehydrogenase Inhibitor BAY2402234", - "Transdermal 4-Hydroxytestosterone", - "Giloralimab", - "Ensituximab", - "Liposomal Topotecan FF-10850", - "Intoplicine", - "Rituximab Conjugate CON-4619", - "Cobimetinib", - "Lutetium Lu 177-PSMA-617", - "Anti-hepcidin Monoclonal Antibody LY2787106", - "BET-bromodomain Inhibitor ODM-207", - "ALK Inhibitor PLB 1003", - "Artemisinin Dimer", - "Phenytoin Sodium", - "Sialyl Tn Antigen", - "Vorolanib", - "XIAP Antisense Oligonucleotide AEG35156", - "PI3K/BET Inhibitor LY294002", - "Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex", - "Yttrium Y 90-Edotreotide", - "Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715", - "BTK inhibitor TG-1701", - "Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202", - "Choline Kinase Alpha Inhibitor TCD-717", - "Carfilzomib", - "p70S6K Inhibitor LY2584702", - "Beauvericin", - "Cyclodisone", - "Teloxantrone", - "Etanidazole", - "Imiquimod", - "Anti-MUC16/CD3 BiTE Antibody REGN4018", - "Sodium Iodide I-131", - "ALK/FAK/Pyk2 Inhibitor CT-707", - "Lexatumumab", - "BRAF Inhibitor ARQ 736", - "Oral Topotecan Hydrochloride", - "Clioquinol", - "Epipropidine", - "Anti-SIRPa Monoclonal Antibody CC-95251", - "Piperazinedione", - "Talabostat", - "Bcl-2 Inhibitor APG 2575", - "Rocapuldencel-T", - "Thyroid Extract", - "Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A", - "17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521", - "Apaziquone", - "Pan-AKT Kinase Inhibitor GSK690693", - "PI3K/mTOR Kinase Inhibitor WXFL10030390", - "Oncolytic HSV-1 C134", - "Prednisolone", - "Ruxolitinib Phosphate", - "Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F", - "dUTPase/DPD Inhibitor TAS-114", - "Proxalutamide", - "Anti-Ly6E Antibody-Drug Conjugate RG 7841", - "Tamrintamab Pamozirine", - "Total Androgen Blockade", - "Anti-VISTA Monoclonal Antibody JNJ 61610588", - "Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014", - "Cyclophosphamide Anhydrous", - "Fotretamine", - "H1299 Tumor Cell Lysate Vaccine", - "Lovastatin", - "NA17.A2 Peptide Vaccine", - "Seclidemstat", - "Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody", - "Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466", - "Marimastat", - "Lutetium Lu 177-Edotreotide", - "Modified Vitamin D Binding Protein Macrophage Activator EF-022", - "XPO1 Inhibitor SL-801", - "Autologous Anti-BCMA CAR-transduced T-cells KITE-585", - "Dexamethasone Phosphate", - "Fascin Inhibitor NP-G2-044", - "Piperine Extract (Standardized)", - "CCR2 Antagonist PF-04136309", - "Anti-C-met Monoclonal Antibody SAIT301", - "Liver X Receptor beta Agonist RGX-104", - "Sizofiran", - "STAT Inhibitor OPB-111077", - "Exicorilant", - "Tazarotene", - "Nab-paclitaxel", - "Anti-OX40 Antibody BMS 986178", - "Rosmantuzumab", - "Sofituzumab Vedotin", - "Anakinra", - "Cisplatin-E Therapeutic Implant", - "Laetrile", - "NY-ESO-B", - "Mitoflaxone", - "Timonacic", - "Zoledronic Acid", - "KRAS G12C Inhibitor GDC-6036", - "Imidazole Mustard", - "Androgen Receptor Antisense Oligonucleotide EZN-4176", - "Acridine Carboxamide", - "Anti-nf-P2X7 Antibody Ointment BIL-010t", - "Elliptinium Acetate", - "Beta-Glucan", - "Irinotecan Hydrochloride", - "Sardomozide", - "SERD D-0502", - "Hsp90 Inhibitor BIIB028", - "MET Kinase Inhibitor OMO-1", - "c-Met Inhibitor AMG 337", - "Anti-CD20/CD3 Monoclonal Antibody REGN1979", - "Berberine Chloride", - "Factor VII-targeting Immunoconjugate Protein ICON-1", - "KRAS Mutant-targeting AMG 510", - "Methyl-5-Aminolevulinate Hydrochloride Cream", - "Staurosporine", - "RhoC Peptide Vaccine RV001V", - "Formestane", - "Avadomide Hydrochloride", - "Recombinant Interleukin-6", - "Roquinimex", - "Anti-PD-1 Monoclonal Antibody GLS-010", - "Onalespib", - "Anti-B7H3 Antibody-drug Conjugate MGC018", - "DR5-targeting Tetrameric Nanobody Agonist TAS266", - "FGF/FGFR Pathway Inhibitor E7090", - "Hsp90 Inhibitor SNX-5542 Mesylate", - "Pan-mutation-selective EGFR Inhibitor CLN-081", - "Radgocitabine Hydrochloride", - "Serine/Threonine Kinase Inhibitor CBP501", - "Eribulin", - "Vactosertib", - "Serclutamab Talirine", - "Prednisolone Sodium Phosphate", - "2-Fluorofucose-containing SGN-2FF", - "CBP/beta-catenin Modulator E7386", - "Cimetidine", - "Citatuzumab Bogatox", - "Bersanlimab", - "Oral Myoma Vaccine V3-myoma", - "Anti-ErbB3 Monoclonal Antibody REGN1400", - "Anti-EphA2 Monoclonal Antibody DS-8895a", - "Dabrafenib Mesylate", - "Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine", - "Amsacrine Lactate", - "Lintuzumab", - "Sevacizumab", - "Elgemtumab", - "Temozolomide", - "Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells", - "Omipalisib", - "Autologous Anti-CD19 CAR T-cells IM19", - "PI3K-delta Inhibitor AMG 319", - "KSP Inhibitor SB-743921", - "Anti-CD33 Monoclonal Antibody BI 836858", - "Xiaoai Jiedu Decoction", - "Bisantrene", - "Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703", - "Idecabtagene Vicleucel", - "Anti-CD19-DM4 Immunoconjugate SAR3419", - "Veltuzumab", - "CD44 Targeted Agent SPL-108", - "STING-activating Cyclic Dinucleotide Agonist MIW815", - "Auranofin", - "Lodapolimab", - "Tepotinib", - "Pravastatin Sodium", - "Monoclonal Antibody HuPAM4", - "Tritylcysteine", - "Anti-CD39 Monoclonal Antibody SRF617", - "Nazartinib", - "Defactinib Hydrochloride", - "Synthetic hTERT DNA Vaccine INO-1400", - "Almurtide", - "Selective Estrogen Receptor Modulator TAS-108", - "Thalicarpine", - "Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388", - "MVA-BN Smallpox Vaccine", - "Ancitabine Hydrochloride", - "Alvespimycin", - "Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310", - "Anti-CD47 Monoclonal Antibody CC-90002", - "Dual-affinity B7-H3/CD3-targeted Protein MGD009", - "Scopoletin", - "Wee1 Kinase Inhibitor Debio 0123", - "Yang Yin Fu Zheng", - "Leuprolide Acetate", - "Recombinant MAGE-3.1 Antigen", - "Tubulin-Binding Agent SSR97225", - "Anti-CD19 iCAR NK Cells", - "Cemadotin Hydrochloride", - "Cetuximab-IR700 Conjugate RM-1929", - "Docetaxel Lipid Microspheres", - "Methoxyamine Hydrochloride", - "DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98", - "Tezacitabine Anhydrous", - "Zuclomiphene Citrate", - "DNA Interference Oligonucleotide PNT2258", - "Bruceanol C", - "PARP Inhibitor CEP-9722", - "Dolastatin 10", - "Fluorouracil-E Therapeutic Implant", - "Bleomycin Sulfate", - "Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T", - "Aurora Kinase Inhibitor MLN8054", - "Bexmarilimab", - "Cabozantinib S-malate", - "JAK2 Inhibitor BMS-911543", - "Arnebia Indigo Jade Pearl Topical Cream", - "Mistletoe Extract", - "Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794", - "Monoclonal Antibody AK002", - "Oleclumab", - "Zorifertinib", - "SLC6A8 Inhibitor RGX-202", - "Monocarboxylate Transporter 1 Inhibitor AZD3965", - "Rodorubicin", - "Pomalidomide", - "Romidepsin", - "Anti c-KIT Antibody-drug Conjugate LOP628", - "Anti-VEGF/ANG2 Nanobody BI 836880", - "Tanespimycin", - "Troxacitabine Nucleotide Prodrug MIV-818", - "EGFR Inhibitor PD-168393", - "Clivatuzumab", - "Firtecan Pegol", - "HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c", - "Allogeneic Anti-CD19 CAR T-cells ALLO-501A", - "MTF-1 Inhibitor APTO-253 HCl", - "Anti-human GITR Monoclonal Antibody TRX518", - "Deslorelin Acetate", - "7-Ethyl-10-Hydroxycamptothecin", - "Mitomycin", - "FGFR4 Inhibitor ICP-105", - "Anti-CD19 Antibody-drug Conjugate SGN-CD19B", - "NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611", - "Taurolidine", - "Futuximab", - "Ispinesib Mesylate", - "PR1 Leukemia Peptide Vaccine", - "Ribozyme RPI.4610", - "Gilteritinib Fumarate", - "Botanical Agent LEAC-102", - "S1P Receptor Agonist KRP203", - "Betulinic Acid", - "Apatorsen", - "Jin Fu Kang", - "Beta-Thioguanine Deoxyriboside", - "Brentuximab", - "LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1", - "Axl/Mer Inhibitor INCB081776", - "Brostallicin", - "Ingenol Mebutate Gel", - "Iodine I 131 Tenatumomab", - "Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine", - "Synthetic Alkaloid PM00104", - "Upifitamab", - "Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858", - "Anti-EGFR Monoclonal Antibody RO5083945", - "Bromebric Acid", - "EGFR/HER2 Inhibitor DZD9008", - "Anti-CEACAM5 Antibody-Drug Conjugate SAR408701", - "HDM2 Inhibitor HDM201", - "Orvacabtagene Autoleucel", - "Uracil Ointment", - "Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536", - "Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104", - "Imaradenant", - "Alvespimycin Hydrochloride", - "PEP-3-KLH Conjugate Vaccine", - "Metarrestin", - "Resminostat", - "Prime Cancer Vaccine MVA-BN-CV301", - "Anti-LAG3 Monoclonal Antibody TSR-033", - "Vofatamab", - "Lapatinib", - "Alacizumab Pegol", - "PEG-interleukin-2", - "CDK Inhibitor SNS-032", - "Autologous Tumor Infiltrating Lymphocytes LN-145-S1", - "Cationic Liposome-Encapsulated Paclitaxel", - "Afatinib Dimaleate", - "Parsatuzumab", - "VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593", - "Brivanib Alaninate", - "Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6", - "Essiac", - "mRNA-Derived Prostate Cancer Vaccine CV9103", - "Pemlimogene Merolisbac", - "Odronextamab", - "Quizartinib", - "Cetrelimab", - "Letrozole", - "Porfimer Sodium", - "Y 90 Monoclonal Antibody Lym-1", - "Galocitabine", - "Interleukin-2 Liposome", - "Protein Tyrosine Kinase 2 Inhibitor IN10018", - "Depatuxizumab", - "Pegaspargase", - "6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158", - "Aurora B Serine/Threonine Kinase Inhibitor TAK-901", - "Allogeneic Irradiated Melanoma Cell Vaccine CSF470", - "Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA", - "Anti-angiopoietin Monoclonal Antibody AMG 780", - "Rigosertib Sodium", - "Artemether Sublingual Spray", - "Blueberry Powder Supplement", - "CAR T-Cells AMG 119", - "Allogeneic Anti-CD20 CAR T-cells LUCAR-20S", - "Anti-PD-L1 Monoclonal Antibody A167", - "Dactolisib Tosylate", - "Anti-BCMA/CD3 BiTE Antibody AMG 420", - "Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10", - "Tislelizumab", - "FAP/4-1BB-targeting DARPin MP0310", - "Acodazole", - "Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143", - "Bactobolin", - "Fosbretabulin Disodium", - "BRAF(V600E) Kinase Inhibitor ABM-1310", - "Rubitecan", - "Mercaptopurine Anhydrous", - "Taxane Compound", - "Tretinoin Liposome", - "Paxalisib", - "Topoisomerase I Inhibitor LMP776", - "Sapanisertib", - "R-(-)-Gossypol Acetic Acid", - "Calcium Release-activated Channel Inhibitor CM4620", - "Elacytarabine", - "Anti-PD-L1 Monoclonal Antibody RC98", - "Akt Inhibitor SR13668", - "MELK Inhibitor OTS167", - "Yangzheng Xiaoji Extract", - "Siremadlin", - "Enterococcus gallinarum Strain MRx0518", - "Delanzomib", - "Pegylated Recombinant L-asparaginase Erwinia chrysanthemi", - "Yttrium Y 90 Glass Microspheres", - "Poly-alendronate Dextran-Guanidine Conjugate", - "Yttrium Y 90 Basiliximab", - "Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001", - "Ceralasertib", - "Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011", - "Paclitaxel Liposome", - "Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202", - "Murizatoclax", - "Salirasib", - "Androgen Receptor Degrader CC-94676", - "Sedoxantrone Trihydrochloride", - "Anti-AXL/PBD Antibody-drug Conjugate ADCT-601", - "H-ras Antisense Oligodeoxynucleotide ISIS 2503", - "Pemigatinib", - "Ex Vivo-expanded Autologous T Cells IMA101", - "Anti-gpA33/CD3 Monoclonal Antibody MGD007", - "Immunomodulatory Agent CC-11006", - "Flutamide", - "Lenzilumab", - "Recombinant CD40-Ligand", - "Agatolimod Sodium", - "Fazarabine", - "Multi-epitope HER2 Peptide Vaccine TPIV100", - "Cryptophycin", - "Interferon Alfa-2B", - "BCMA-CD19 Compound CAR T Cells", - "Vinorelbine Tartrate Oral", - "Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101", - "Navarixin", - "At 211 Monoclonal Antibody 81C6", - "Ovine Submaxillary Mucin", - "Tucatinib", - "Lontucirev", - "BCMA x CD3 T-cell Engaging Antibody CC-93269", - "Anti-ROR1 ADC VLS-101", - "Dovitinib", - "BRAF(V600E) Kinase Inhibitor RO5212054", - "Oncolytic HSV-1 rRp450", - "Phenethyl Isothiocyanate-containing Watercress Juice", - "Sotigalimab", - "Emepepimut-S", - "Resveratrol", - "Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806", - "PD-1 Directed Probody CX-188", - "pbi-shRNA STMN1 Lipoplex", - "Enobosarm", - "Lutetium Lu 177 Monoclonal Antibody J591", - "Mitoguazone Dihydrochloride", - "Alvocidib", - "Monoclonal Antibody TRK-950", - "Anti-CD38 Monoclonal Antibody SAR442085", - "CDC7 Inhibitor TAK-931", - "Cediranib", - "Anti-CD26 Monoclonal Antibody YS110", - "Topoisomerase I/II Inhibitor NEV-801", - "SDF-1 Receptor Antagonist PTX-9908", - "Radotinib Hydrochloride", - "Topoisomerase-II-beta Inhibitor Racemic XK469", - "Anti-PSMA Monoclonal Antibody MDX1201-A488", - "Dopamine-Somatostatin Chimeric Molecule BIM-23A760", - "Camptothecin", - "Ioflubenzamide I-131", - "Niraparib", - "Pioglitazone Hydrochloride", - "Foritinib Succinate", - "Fosbretabulin", - "Anti-PD-L1/CD137 Bispecific Antibody MCLA-145", - "Mps1 Inhibitor BAY 1217389", - "BET Inhibitor FT-1101", - "Yttrium Y-90 Epratuzumab Tetraxetan", - "Ofatumumab", - "Anti-CD30 Monoclonal Antibody XmAb2513", - "HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302", - "Mucoadhesive Paclitaxel Formulation", - "Tegafur", - "Anti-CD40 Agonist Monoclonal Antibody ABBV-927", - "Ropocamptide", - "Dezapelisib", - "FLT3 Inhibitor SKI-G-801", - "Pan-PIM Inhibitor INCB053914", - "Anti-MUC16/CD3 Bispecific Antibody REGN4018", - "Nidanilimab", - "Sepantronium Bromide", - "Camptothecin Sodium", - "Anti-CTLA4 Antibody Fc Fusion Protein KN044", - "Oncolytic Adenovirus ORCA-010", - "Monoclonal Antibody L6", - "Varlitinib Tosylate", - "Piroxantrone", - "Adecatumumab", - "CDK7 Inhibitor SY-1365", - "Anti-CD20-engineered Toxin Body MT-3724", - "Andecaliximab", - "E2F1 Pathway Activator ARQ 171", - "FGFR/CSF-1R Inhibitor 3D185", - "Inproquone", - "Tirapazamine", - "Arfolitixorin", - "Daratumumab/rHuPH20", - "Alofanib", - "MDM2 Inhibitor BI 907828", - "Multikinase Inhibitor 4SC-203", - "Alflutinib Mesylate", - "Cabazitaxel", - "Girodazole", - "Ficlatuzumab", - "HDAC/EGFR/HER2 Inhibitor CUDC-101", - "Allogeneic Melanoma Vaccine AGI-101H", - "IGF-methotrexate Conjugate", - "KRAS G12C Inhibitor MRTX849", - "Melphalan Hydrochloride", - "Anti-CD32B Monoclonal Antibody BI-1206", - "Antibody-drug Conjugate SC-003", - "Glucarpidase", - "Matuzumab", - "Tyrosine Kinase Inhibitor XL228", - "Crolibulin", - "Matrix Metalloproteinase Inhibitor MMI270", - "Anti-PD-L1 Monoclonal Antibody FAZ053", - "c-Met Inhibitor MSC2156119J", - "Levetiracetam", - "Olivomycin", - "Risperidone Formulation in Rumenic Acid", - "Triptorelin", - "GS/pan-Notch Inhibitor AL101", - "Interleukin-15 Agonist Fusion Protein SHR1501", - "Pertuzumab", - "Mirzotamab Clezutoclax", - "Aurora A Kinase Inhibitor TAS-119", - "Dinutuximab", - "Radgocitabine", - "Clomiphene", - "CXCR4/E-selectin Antagonist GMI-1359", - "Autologous Tumor Infiltrating Lymphocytes MDA-TIL", - "Lactoferrin-derived Lytic Peptide LTX-315", - "Samuraciclib", - "Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002", - "Amuvatinib Hydrochloride", - "Autologous Anti-CD19/CD22 CAR T-cells AUTO3", - "D-methionine Formulation MRX-1024", - "Melphalan Flufenamide", - "Onatasertib", - "Docetaxel Emulsion ANX-514", - "Emactuzumab", - "PKC-beta Inhibitor MS-553", - "Pictilisib Bismesylate", - "Anti-PD-L1 Monoclonal Antibody MDX-1105", - "Archexin", - "HLA-A*2402-Restricted Multipeptide Vaccine S-488410", - "Iodine I 131 Monoclonal Antibody muJ591", - "PD-L1 Inhibitor INCB086550", - "Poliglusam", - "Indusatumab Vedotin", - "Anti-PD-L1 Monoclonal Antibody CBT-502", - "Anti-NaPi2b Monoclonal Antibody XMT-1535", - "Rigosertib", - "Bruceanol F", - "Anti-CD117 Monoclonal Antibody JSP191", - "Viagenpumatucel-L", - "CD80-Fc Fusion Protein FPT155", - "SBIL-2", - "IMT-1012 Immunotherapeutic Vaccine", - "Chemotherapy", - "MCL-1 Inhibitor ABBV-467", - "Thymidylate Synthase Inhibitor DFP-11207", - "Docetaxel Nanoparticle CPC634", - "Carmofur", - "Balixafortide", - "Paclitaxel Trevatide", - "Taltobulin", - "Anti-LGR5 Monoclonal Antibody BNC101", - "Lurbinectedin", - "Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A", - "Aryl Hydrocarbon Receptor Antagonist BAY2416964", - "Vatalanib", - "Liposome", - "EGFR/HER2 Inhibitor AV-412", - "PAK4 Inhibitor PF-03758309", - "Plamotamab", - "Babaodan Capsule", - "Gataparsen Sodium", - "Sacubitril/Valsartan", - "Autologous BCMA-targeted CAR T Cells CC-98633", - "Hsp90 Inhibitor SNX-5422 Mesylate", - "DNA-PK/TOR Kinase Inhibitor CC-115", - "CD28/ICOS Antagonist ALPN-101", - "Nimustine", - "Ribociclib/Letrozole", - "Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135", - "Levothyroxine Sodium", - "Guanabenz Acetate", - "Copper Cu 64-ATSM", - "Tetrathiomolybdate", - "Simalikalactone D", - "Serabelisib", - "Androgen Receptor Inhibitor EPI-7386", - "Fosifloxuridine Nafalbenamide", - "Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101", - "Pasotuxizumab", - "Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901", - "Antineoplaston A10", - "EGFR T790M Antagonist BPI-15086", - "p300/CBP Bromodomain Inhibitor CCS1477", - "Revdofilimab", - "Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY)", - "HDM2 Inhibitor MK-8242", - "Siplizumab", - "Acalabrutinib", - "Engineered Toxin Body Targeting HER2 MT-5111", - "Tasisulam", - "Chlorotoxin", - "Rexinoid NRX 194204", - "Edotecarin", - "Ianalumab", - "Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes", - "Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride", - "Nutraceutical TBL-12", - "Ruxolitinib", - "Talmapimod", - "Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1", - "WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401", - "Nadofaragene Firadenovec", - "Bleomycin A2", - "MOF Compound RiMO-301", - "Nitric Oxide-Releasing Acetylsalicylic Acid Derivative", - "Tretinoin", - "Pegargiminase", - "Elotuzumab", - "Anti-CD44 Monoclonal Antibody RO5429083", - "STAT3 Inhibitor OPB-51602", - "Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2", - "V930 Vaccine", - "pan-PIM Kinase Inhibitor NVP-LGB-321", - "Dacomitinib", - "Anti-c-Met Monoclonal Antibody HLX55", - "Polysialic Acid", - "Neratinib Maleate", - "Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A", - "Vitespen", - "Anti-ErbB3 Monoclonal Antibody AV-203", - "FGFR Inhibitor TAS-120", - "Rosiglitazone Maleate", - "Mitomycin A", - "Anti-GITR Agonistic Monoclonal Antibody INCAGN01876", - "IDO Peptide Vaccine IO102", - "Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66", - "Anti-PD-1 Monoclonal Antibody BAT1306", - "Cedazuridine/Azacitidine Combination Agent ASTX030", - "F16-IL2 Fusion Protein", - "Fludarabine", - "Ras Inhibitor", - "CDK Inhibitor R547", - "p97 Inhibitor CB-5339 Tosylate", - "Anti-PD-L1 Monoclonal Antibody SHR-1316", - "Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081", - "Bemarituzumab", - "O-Chloroacetylcarbamoylfumagillol", - "Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A", - "Alpha-Gal AGI-134", - "Long Peptide Vaccine 7", - "Estramustine Phosphate Sodium", - "Anti-CD157 Monoclonal Antibody MEN1112", - "Astuprotimut-R", - "10-Deacetyltaxol", - "Mosedipimod", - "Recombinant Human Endostatin", - "FGFR Inhibitor ASP5878", - "Tivozanib", - "Irofulven", - "Emofolin Sodium", - "Tretazicar", - "Polo-like Kinase 1 Inhibitor MK1496", - "Bovine Cartilage", - "Tegavivint", - "Acridine", - "Imatinib Mesylate", - "Aurora B/C Kinase Inhibitor GSK1070916A", - "Nimesulide-Hyaluronic Acid Conjugate CA102N", - "Oral Ixabepilone", - "Methazolamide", - "LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164", - "Tapotoclax", - "Glutaminase Inhibitor IPN60090", - "Anti-CD40 Monoclonal Antibody SEA-CD40", - "Rituximab", - "Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV", - "Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A", - "LMB-9 Immunotoxin", - "Aurora Kinase Inhibitor TTP607", - "Glycooptimized Trastuzumab-GEX", - "Laromustine", - "Cyclin-dependent Kinase Inhibitor PF-06873600", - "Halichondrin Analogue E7130", - "Picibanil", - "Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497", - "Incyclinide", - "Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315", - "Merbarone", - "SarCNU", - "Therapeutic Estradiol", - "Hsp90 Inhibitor HSP990", - "HPV-6-targeting Immunotherapeutic Vaccine INO-3106", - "Budigalimab", - "Cationic Peptide Cream Cypep-1", - "Aryl Hydrocarbon Receptor Inhibitor IK-175", - "LSD1 Inhibitor IMG-7289", - "Mevociclib", - "Mitobronitol", - "FGFR Inhibitor Debio 1347", - "PD-1 Inhibitor", - "Decitabine and Cedazuridine", - "Antineoplaston AS2-1", - "Anti-PRL-3 Monoclonal Antibody PRL3-zumab", - "Anti-CD205 Antibody-drug Conjugate OBT076", - "Apitolisib", - "HSP90alpha/beta Inhibitor TAS-116", - "IGF-1R Inhibitor PL225B", - "Dihydro-5-Azacytidine", - "Anti-C4.4a Antibody-Drug Conjugate BAY1129980", - "Akt/ERK Inhibitor ONC201", - "Cixutumumab", - "Aerosolized Liposomal Rubitecan", - "Monoclonal Antibody 3F8", - "Interleukin-12-Fc Fusion Protein DF6002", - "2-Fluoroadenine", - "DR5 HexaBody Agonist GEN1029", - "Baltaleucel-T", - "Alanosine", - "Daclizumab", - "HIF-1alpha Inhibitor PX-478", - "Dupilumab", - "Landogrozumab", - "Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217", - "Aurora A Kinase Inhibitor MK5108", - "Cereblon Modulator CC-90009", - "Smac Mimetic LCL161", - "Tocotrienol-rich Fraction", - "Engineered Human Umbilical Vein Endothelial Cells AB-205", - "Glioblastoma Multiforme Multipeptide Vaccine IMA950", - "Acolbifene Hydrochloride", - "ASP4132", - "Anti-PRAME Immunotherapeutic GSK2302032A", - "Anti-GITR Monoclonal Antibody MK-4166", - "Mps1 Inhibitor BOS172722", - "Ritrosulfan", - "Ansamitomicin P-3", - "Autologous CD22-4SCAR-expressing T-cells 4SCAR22", - "Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR", - "Fluorouracil Implant", - "Isobrucein B", - "Rebimastat", - "Camrelizumab", - "PRMT1 Inhibitor GSK3368715", - "Anti-OX40 Agonist Monoclonal Antibody BGB-A445", - "Lerociclib", - "Rociletinib", - "Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3", - "Rucaparib Camsylate", - "Raloxifene", - "Monoclonal Antibody HuHMFG1", - "CYP11A1 Inhibitor ODM-209", - "Navy Bean Powder", - "PI3K-delta Inhibitor INCB050465", - "Anti-CEACAM6 Antibody BAY1834942", - "Trodusquemine", - "Hydralazine Hydrochloride", - "Galectin Inhibitor GR-MD-02", - "BTK Inhibitor CT-1530", - "Albumin-binding Cisplatin Prodrug BTP-114", - "Atorvastatin Calcium", - "Pan-KRAS Inhibitor BI 1701963", - "Urabrelimab", - "Vinorelbine Tartrate", - "Terameprocol", - "Sorafenib", - "TLR9 Agonist AST-008", - "Actinomycin F1", - "Mitolactol", - "Tauromustine", - "Tigapotide", - "Anti-FLT3 Antibody-drug Conjugate AGS62P1", - "cEt KRAS Antisense Oligonucleotide AZD4785", - "VEGFR Inhibitor KRN951", - "HDAC6 Inhibitor KA2507", - "PI3K-beta Inhibitor SAR260301", - "Valecobulin", - "Lapatinib Ditosylate", - "Arginine Butyrate", - "Exatecan Mesylate Anhydrous", - "Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459", - "BRAFV600/PI3K Inhibitor ASN003", - "Bcl-Xs Adenovirus Vaccine", - "Topotecan Hydrochloride Liposomes", - "Recombinant Human Papillomavirus Nonavalent Vaccine", - "AEE788", - "Infigratinib", - "Estrogen Receptor Agonist GTx-758", - "Anti-HLA-DR Monoclonal Antibody IMMU-114", - "Futuximab/Modotuximab Mixture", - "Acronine", - "Semaxanib", - "MUC-1/WT1 Peptide-primed Autologous Dendritic Cells", - "Vinepidine", - "Anti-CD33/CD3 Bispecific Antibody GEM 333", - "Heterodimeric Interleukin-15", - "Topoisomerase-II Inhibitor Racemic XK469", - "Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19", - "Anti-HER3 Monoclonal Antibody GSK2849330", - "IDO/TDO Inhibitor LY-01013", - "TLR7/8/9 Antagonist IMO-8400", - "Foslinanib Disodium", - "Inecalcitol", - "Raf Kinase Inhibitor HM95573", - "Anti-CSF1R Monoclonal Antibody IMC-CS4", - "Topical Gemcitabine Hydrochloride", - "Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells", - "Aminopterin", - "MetAP2 Inhibitor APL-1202", - "Parvovirus H-1", - "Recombinant Fas Ligand", - "Anti-AG7 Antibody Drug Conjugate AbGn-107", - "Miransertib", - "Cyclin-dependent Kinase 8/19 Inhibitor BCD 115", - "Oncolytic HSV1716", - "Enzastaurin Hydrochloride", - "Penclomedine", - "Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003", - "Triazene Derivative CB10-277", - "Zanubrutinib", - "Epitiostanol", - "Tigatuzumab", - "Dalantercept", - "PI3K/mTOR Kinase Inhibitor DS-7423", - "Galiximab", - "BET Inhibitor RO6870810", - "Recombinant Human Angiotensin Converting Enzyme 2 APN01", - "Nilotinib", - "VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820", - "Milciclib Maleate", - "Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate", - "CCR4 Inhibitor FLX475", - "Cordycepin", - "Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B", - "Elagolix", - "Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522", - "Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013", - "Anti-IL-8 Monoclonal Antibody HuMax-IL8", - "Radium Ra 223 Dichloride", - "Autologous ROR2-targeted CAR T-cells CCT301-59", - "Elmustine", - "RARalpha Agonist IRX5183", - "Clodronate Disodium", - "Anti-BCMA/CD3 BiTE Antibody REGN5458", - "Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949", - "Glecaprevir/Pibrentasvir", - "Glembatumumab Vedotin", - "Polatuzumab Vedotin", - "Pelitinib", - "Plevitrexed", - "RAD51 Inhibitor CYT-0851", - "Obinutuzumab", - "Xanthohumol", - "ERK Inhibitor GDC-0994", - "Enoblituzumab", - "Semuloparin", - "Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement", - "Monoclonal Antibody ASP1948", - "Multikinase Inhibitor AEE788", - "DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555", - "Enzalutamide", - "Reparixin", - "Pharmacological Ascorbate", - "Selective Estrogen Receptor Degrader AZD9496", - "Ubenimex", - "Yttrium Y-90 Tacatuzumab Tetraxetan", - "Anti-PD-1 Monoclonal Antibody MEDI0680", - "Elinafide", - "Methotrexate", - "PARP-1/2 Inhibitor ABT-767", - "Hsp90 Inhibitor PU-H71", - "TGF-beta Receptor 1 Inhibitor PF-06952229", - "DHEA Mustard", - "Tisotumab Vedotin", - "mTORC1/2 Kinase Inhibitor BI 860585", - "Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein", - "Miptenalimab", - "Tubercidin", - "HDAC Inhibitor CHR-2845", - "HER2 Inhibitor CP-724;714", - "Theramide", - "PI3Kbeta Inhibitor AZD8186", - "Lutetium Lu-177 Capromab", - "Mechlorethamine", - "Anti-PD-1/TIM-3 Bispecific Antibody RO7121661", - "Felzartamab", - "EBNA-1 inhibitor VK-2019", - "Boronophenylalanine-Fructose Complex", - "Nagrestipen", - "TGFa-PE38 Immunotoxin", - "Immunomodulator OHR/AVR118", - "Sabarubicin", - "P-cadherin Antagonist PF-03732010", - "Apoptosis Inducer GCS-100", - "Trabedersen", - "Lutetium Lu 177-DOTA-EB-TATE", - "Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine", - "Anti-CD73 Monoclonal Antibody NZV930", - "Folate Receptor-Targeted Vinca Alkaloid EC0489", - "Maraba Oncolytic Virus Expressing Mutant HPV E6/E7", - "HPPH", - "Volasertib", - "IDH1 Mutant Inhibitor LY3410738", - "Checkpoint Kinase Inhibitor AZD7762", - "Iodine I 131 MIP-1095", - "Recombinant Interleukin-12", - "Bcl-2 Inhibitor BCL201", - "HDAC inhibitor CG200745", - "Lifileucel", - "2-Hydroxyestradiol", - "Protein Phosphatase 2A Inhibitor LB-100", - "Anti-CD27 Agonistic Monoclonal Antibody MK-5890", - "Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931", - "CD44v6-specific CAR T-cells", - "Indatuximab Ravtansine", - "Perillyl Alcohol", - "Bevacizumab", - "Zinc Finger Nuclease ZFN-603", - "Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12", - "Belinostat", - "Dihydroorotate Dehydrogenase Inhibitor AG-636", - "Zorubicin", - "Atorvastatin Sodium", - "Eflornithine", - "Bleomycin", - "Cisplatin Liposomal", - "Acitretin", - "Letetresgene Autoleucel", - "Methylprednisolone Acetate", - "HER2 Tri-specific Natural Killer Cell Engager DF1001", - "LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes", - "Fimepinostat", - "Amrubicin Hydrochloride", - "Atezolizumab", - "Lutetium Lu 177 DOTA-biotin", - "CAIX Inhibitor SLC-0111", - "Allogeneic Anti-BCMA-CAR T-cells PBCAR269A", - "Monoclonal Antibody 3622W94", - "RET/SRC Inhibitor TPX-0046", - "Alestramustine", - "Ropeginterferon Alfa-2B", - "Carzinophilin", - "Selective Cytokine Inhibitory Drug CC-1088", - "Shark Cartilage", - "Anti-CD20 Monoclonal Antibody BAT4306F", - "Anti-claudin18.2 Monoclonal Antibody AB011", - "Ethyleneimine", - "MDM2 Inhibitor KRT-232", - "EGFR Inhibitor TY-9591", - "Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum", - "Anti-PD-1 Monoclonal Antibody SCT-I10A", - "Bacillus Calmette-Guerin Substrain Connaught Live Antigen", - "MCL-1 inhibitor AMG 397", - "Pamrevlumab", - "FLT3/CDK4/6 Inhibitor FLX925", - "Olaparib", - "Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300", - "Recombinant Human Plasminogen Kringle 5 Domain ABT 828", - "Miltefosine", - "Palladium Pd-103", - "Selective Androgen Receptor Modulator RAD140", - "Spartalizumab", - "Axalimogene Filolisbac", - "Retrovector Encoding Mutant Anti-Cyclin G1", - "MOv-gamma Chimeric Receptor Gene", - "GI-4000 Vaccine", - "LRP5/6 Antagonist BI 905677", - "c-raf Antisense Oligonucleotide ISIS 5132", - "Recombinant Platelet Factor 4", - "Splicing Inhibitor H3B-8800", - "Lenvatinib", - "Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480", - "Flanvotumab", - "Vonlerolizumab", - "p53/HDM2 Interaction Inhibitor CGM097", - "Tolebrutinib", - "Gamma-Secretase Inhibitor RO4929097", - "Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107", - "Tilarginine", - "Wobe-Mugos E", - "Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011", - "Anti-RANKL Monoclonal Antibody JMT103", - "Chimeric Monoclonal Antibody 81C6", - "Iodine I 131 Apamistamab", - "Personalized ALL-specific Multi-HLA-binding Peptide Vaccine", - "Yttrium Y 90 Monoclonal Antibody BrE-3", - "Anti-CD33/CD3 BiTE Antibody AMG 673", - "Anti-CD20 Monoclonal Antibody MIL62", - "FAK/ALK/ROS1 Inhibitor APG-2449", - "Efatutazone Dihydrochloride", - "Mitoxantrone", - "Personalized Neoantigen DNA Vaccine GNOS-PV01", - "Ribosome-Inactivating Protein CY503", - "Olinvacimab", - "Anti-HER3 Antibody-drug Conjugate U3 1402", - "Benzoylphenylurea", - "Mutant p53 Activator COTI-2", - "Polymer-conjugated IL-15 Receptor Agonist NKTR-255", - "Proapoptotic Sulindac Analog CP-461", - "Anti-TIM-3 Monoclonal Antibody BGB-A425", - "Encapsulated Rapamycin", - "Exemestane", - "Lilotomab", - "Prexasertib", - "BET Inhibitor BMS-986158", - "Prolgolimab", - "Polyamine Transport Inhibitor AMXT-1501 Dicaprate", - "Lumretuzumab", - "Dilpacimab", - "PH20 Hyaluronidase-expressing Adenovirus VCN-01", - "Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301", - "Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701", - "Recombinant KSA Glycoprotein CO17-1A", - "Pirarubicin", - "Zinostatin", - "Ibritumomab Tiuxetan", - "Itraconazole Dispersion In Polymer Matrix", - "Hypoxia-activated Prodrug TH-4000", - "APC8015F", - "Ocaratuzumab", - "FAK Inhibitor GSK2256098", - "Folate Receptor Targeted Epothilone BMS753493", - "Mitotane", - "Spiroplatin", - "Monoclonal Antibody SGN-14", - "Doxorubicin-Magnetic Targeted Carrier Complex", - "Peldesine", - "Warfarin Sodium", - "Liposomal Eribulin Mesylate", - "Ras Peptide VAL", - "Anti-ICOS Agonist Antibody GSK3359609", - "Fosaprepitant", - "Antineoplastic Vaccine", - "Monoclonal Antibody A1G4 Anti-Idiotype Vaccine", - "Yttrium Y 90-DOTA-Biotin", - "Vibecotamab", - "Triamcinolone Hexacetonide", - "Amino Acid Injection", - "Avapritinib", - "hTERT-encoding DNA Vaccine INVAC-1", - "Galeterone", - "Anti-Nucleolin Aptamer AS1411", - "Partially Engineered T-regulatory Cell Donor Graft TRGFT-201", - "Black Cohosh", - "Oxcarbazepine", - "Vadimezan", - "A2A Receptor Antagonist EOS100850", - "Peptide 946 Melanoma Vaccine", - "Vopratelimab", - "Ciclopirox Prodrug CPX-POM", - "Vulinacimab", - "Vanucizumab", - "Coriolus Versicolor Extract", - "Daniquidone", - "Anti-PD1 Monoclonal Antibody AGEN2034", - "Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318", - "Brimonidine Tartrate Nanoemulsion OCU-300", - "Aclarubicin", - "Lipid Nanoparticle Encapsulated OX40L mRNA-2416", - "Pelitrexol", - "Hematoporphyrin Derivative", - "C/EBP Beta Antagonist ST101", - "Platinum Acetylacetonate-Titanium Dioxide Nanoparticles", - "Anti-HER2/MMAE Antibody-drug Conjugate MRG002", - "Lenalidomide Analog KPG-121", - "Cibisatamab", - "Anti-CD39 Monoclonal Antibody TTX-030", - "Paclitaxel-Loaded Polymeric Micelle", - "Arugula Seed Powder", - "Cedazuridine/Decitabine Combination Agent ASTX727", - "Docetaxel Anhydrous", - "Tesetaxel", - "Teniposide", - "Thorium Th 227 Anetumab Corixetan", - "Farletuzumab", - "Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957", - "Trimeric GITRL-Fc OMP-336B11", - "Maackia amurensis Seed Lectin", - "Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A", - "Imidazole-Pyrazole", - "Robatumumab", - "Monoclonal Antibody Me1-14 F(ab')2", - "Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318", - "Ivaltinostat", - "ChiNing Decoction", - "Lisavanbulin", - "Adenoviral Cancer Vaccine PF-06936308", - "Mifepristone", - "PEG-Proline-Interferon Alfa-2b", - "Coltuximab Ravtansine", - "Dicycloplatin", - "Mitozolomide", - "Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles", - "Sonidegib", - "Losoxantrone Hydrochloride", - "Simtuzumab", - "Esorubicin Hydrochloride", - "Chloroquinoxaline Sulfonamide", - "EZH2 Inhibitor CPI-1205", - "Yttrium Y-90 Ibritumomab Tiuxetan", - "Carlumab", - "Anti-CLEC12A/CD3 Bispecific Antibody MCLA117", - "Bcl-2 Inhibitor BGB-11417", - "Fulvestrant", - "ERK1/2 Inhibitor ASN007", - "Anti-IL-15 Monoclonal Antibody AMG 714", - "Ganglioside GM2", - "Alitretinoin", - "Epacadostat", - "Monoclonal Antibody HuAFP31", - "Halofuginone", - "Tisagenlecleucel", - "Imatinib", - "SIRPa-4-1BBL Fusion Protein DSP107", - "Didox", - "Glutamine Antagonist DRP-104", - "Olutasidenib", - "Trastuzumab Emtansine", - "VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813", - "Cevipabulin Succinate", - "Pumitepa", - "Sergiolide", - "Adavosertib", - "Lavendustin A", - "Obatoclax Mesylate", - "Autologous Anti-CD19 CAR-CD28 T-cells ET019002", - "Ipafricept", - "Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101", - "Gold Sodium Thiomalate", - "Mannosylerythritol Lipid", - "Metamelfalan", - "Oportuzumab Monatox", - "Tetradecanoylphorbol Acetate", - "Topoisomerase I Inhibitor Genz-644282", - "Liothyronine I-131", - "Monoclonal Antibody 105AD7 Anti-idiotype Vaccine", - "Anti-CXCR4 Monoclonal Antibody PF-06747143", - "Omacetaxine Mepesuccinate", - "Pentamethylmelamine", - "Bushen Culuan Decoction", - "Carmustine Sustained-Release Implant Wafer", - "MEK Inhibitor GDC-0623", - "Ambazone", - "Anti-PSMA/CD3 Bispecific Antibody CCW702", - "Lurtotecan", - "HPV E6/E7-encoding Arenavirus Vaccine HB-201", - "Pibrozelesin Hydrobromide", - "Huang Lian", - "DACH-Platin Micelle NC-4016", - "Pingyangmycin", - "Dynemicin", - "Anti-c-Met Antibody-drug Conjugate TR1801", - "Anti-TIM-3 Monoclonal Antibody MBG453", - "Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008", - "Brostacillin Hydrochloride", - "Fas Receptor Agonist APO010", - "Liarozole", - "Conbercept", - "Doxorubicin", - "Nurulimab", - "Liposome-encapsulated TAAs mRNA Vaccine W_ova1", - "SHP2 Inhibitor RLY-1971", - "Rebastinib Tosylate", - "Sibrotuzumab", - "Diphencyprone", - "Allogeneic Anti-CD19 Universal CAR-T Cells CTA101", - "I 131 Antiferritin Immunoglobulin", - "Iodine I 124 Monoclonal Antibody A33", - "Monoclonal Antibody RAV12", - "Phenyl Acetate", - "Anti-CTLA-4 Probody BMS-986288", - "Cilengitide", - "Polypodium leucotomos Extract", - "Racotumomab", - "Vascular Disrupting Agent ZD6126", - "P-cadherin-targeting Agent PF-06671008", - "Aurora kinase A/B inhibitor TT-00420", - "Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010", - "Anti-CD27L Antibody-Drug Conjugate AMG 172", - "Anti-DKK1 Monoclonal Antibody BHQ880", - "Denibulin Hydrochloride", - "Oxidopamine", - "Anti-EGFR/c-Met Bispecific Antibody EMB-01", - "HPV-16 E6 Peptides Vaccine/Candida albicans Extract", - "Lutetium Lu-177 Girentuximab", - "Protein Arginine Methyltransferase 5 Inhibitor GSK3326595", - "Paclitaxel", - "Enloplatin", - "Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002", - "CD80-Fc Fusion Protein ALPN-202", - "Arginase Inhibitor INCB001158", - "Minretumomab", - "Vascular Disrupting Agent BNC105P", - "Tasisulam Sodium", - "Spongistatin", - "Folate Receptor-Targeted Tubulysin Conjugate EC1456", - "Personalized Neoantigen DNA Vaccine GNOS-PVO2", - "Pyridyl Cyanoguanidine CHS 828", - "Mitindomide", - "Lutetium Lu 177 DOTA-N3-CTT1403", - "Autologous Anti-CD123 CAR-T Cells", - "Tarextumab", - "PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1", - "Antibody-drug Conjugate PF-06664178", - "Multi-neo-epitope Vaccine OSE 2101", - "TGFbeta Inhibitor LY3200882", - "Iratumumab", - "Tallimustine", - "Antibody-drug Conjugate ABBV-085", - "Plocabulin", - "Aminopterin Sodium", - "Antibody-Drug Conjugate DFRF4539A", - "Tomaralimab", - "Tucidinostat", - "Catumaxomab", - "4-Thio-2-deoxycytidine", - "FPV Vaccine CV301", - "Recombinant Thyroglobulin", - "PIM Kinase Inhibitor TP-3654", - "TGF-beta Receptor 1 Kinase Inhibitor SH3051", - "Y 90 Monoclonal Antibody m170", - "Gemtuzumab Ozogamicin", - "Perfosfamide", - "Barasertib", - "Budotitane", - "SNS01-T Nanoparticles", - "Andrographolide", - "Anti-CD74 Antibody-drug Conjugate STRO-001", - "OxPhos Inhibitor VLX600", - "ICT-121 Dendritic Cell Vaccine", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217", - "Beta Alethine", - "Codrituzumab", - "Fluorine F 18 Ara-G", - "Anti-BCMA/CD3 BiTE Antibody AMG 701", - "Mcl-1 Inhibitor AZD5991", - "IAP Inhibitor AT-406", - "Anti-PD1/CTLA4 Bispecific Antibody XmAb20717", - "Cantuzumab Ravtansine", - "Fedratinib Hydrochloride", - "Epipodophyllotoxin Analog GL331", - "Maekmoondong-tang", - "Phytochlorin Sodium-Polyvinylpyrrolidone Complex", - "siRNA-transfected Peripheral Blood Mononuclear Cells APN401", - "Azapicyl", - "Edrecolomab", - "Anti-CD70 Antibody-drug Conjugate SGN-CD70A", - "Trifluridine and Tipiracil Hydrochloride", - "Oral Docetaxel", - "Lutetium Lu 177 PP-F11N", - "Dactolisib", - "hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301", - "Iso-fludelone", - "Rilotumumab", - "ATR Kinase Inhibitor M6620", - "Radium Ra 224-labeled Calcium Carbonate Microparticles", - "Navicixizumab", - "EGFR/VEGFR/RET Inhibitor HA121-28", - "Floxuridine", - "Ilorasertib", - "Iberdomide", - "Taletrectinib", - "Histrelin Acetate", - "CENP-E Inhibitor GSK-923295", - "Glioma Lysate Vaccine GBM6-AD", - "Entinostat", - "Ranibizumab", - "Redaporfin", - "Telratolimod", - "Androgen Receptor Downregulator AZD3514", - "Glasdegib", - "FGFR4 Inhibitor H3B-6527", - "Ifabotuzumab", - "Smoothened Antagonist BMS-833923", - "Fadrozole Hydrochloride", - "Anti-LAG-3 Monoclonal Antibody REGN3767", - "CEBPA-targeting saRNA MTL-CEBPA Liposome", - "Yttrium-90 Polycarbonate Brachytherapy Plaque", - "RNR Inhibitor COH29", - "Phosphatidylcholine-Bound Silybin", - "Varlilumab", - "Forodesine Hydrochloride", - "HPV DNA Plasmids Therapeutic Vaccine VGX-3100", - "Gusperimus Trihydrochloride", - "Melanoma Monoclonal Antibody hIgG2A", - "Elliptinium", - "MET Tyrosine Kinase Inhibitor PF-04217903", - "Gemcitabine-Phosphoramidate Hydrochloride NUC-1031", - "Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528", - "Famitinib", - "Nolatrexed Dihydrochloride", - "BF-200 Gel Formulation", - "Labetuzumab Govitecan", - "Monoclonal Antibody 7C11", - "Thioureidobutyronitrile", - "Tipifarnib", - "Marizomib", - "Endothelin B Receptor Blocker ENB 003", - "Folate-FITC", - "Cytidine Analog RX-3117", - "Litronesib", - "Anti-TROP2 Antibody-drug Conjugate SKB264", - "Pomegranate Liquid Extract", - "Dendritic Cell Vaccine", - "Anti-LAG3 Monoclonal Antibody MK-4280", - "Cevostamab", - "Idronoxil", - "Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130", - "Anti-OX40 Monoclonal Antibody GSK3174998", - "pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0", - "Ribonuclease QBI-139", - "Anti-CD19/CD3 BiTE Antibody AMG 562", - "Fludarabine Phosphate", - "HCV DNA Vaccine INO-8000", - "N;N-Dibenzyl Daunomycin", - "Bazedoxifene", - "Inactivated Oncolytic Virus Particle GEN0101", - "Ladirubicin", - "Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC", - "Thioinosine", - "Edicotinib", - "Telaglenastat", - "Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352", - "Metoprine", - "Lometrexol", - "Antibody-drug Conjugate SC-004", - "Vindesine", - "Brivudine Phosphoramidate", - "Realgar-Indigo naturalis Formulation", - "Vedolizumab", - "ATM Inhibitor M 3541", - "Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042", - "Cobolimab", - "Anti-CD70 CAR-expressing T Lymphocytes", - "Gelonin", - "Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641", - "Pirarubicin Hydrochloride", - "Bardoxolone", - "Milatuzumab", - "Ragifilimab", - "Nelarabine", - "Anti-HER2 Monoclonal Antibody B002", - "Golvatinib", - "Peretinoin", - "Iodine I 131 IPA", - "Medroxyprogesterone", - "Kunecatechins Ointment", - "Liposomal NDDP", - "Tefinostat", - "CD40 Agonist Monoclonal Antibody CP-870;893", - "Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901", - "DEC-205/NY-ESO-1 Fusion Protein CDX-1401", - "Interferon Alfa-N1", - "Calicheamicin Gamma 1I", - "Bruceanol D", - "AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M", - "Immune Checkpoint Inhibitor ASP8374", - "Epirubicin Hydrochloride", - "Ertumaxomab", - "Guselkumab", - "Hsp90 Antagonist KW-2478", - "Interferon-gamma-expressing Adenovirus Vaccine ASN-002", - "Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006", - "Cenersen", - "Pixantrone Dimaleate", - "Becatecarin", - "Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1", - "Anti-AGS-8 Monoclonal Antibody AGS-8M4", - "Cosibelimab", - "Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine", - "Anti-FLT3 Monoclonal Antibody 4G8-SDIEM", - "Anti-PD-L1 Monoclonal Antibody ZKAB001", - "Lung-targeted Immunomodulator QBKPN", - "Caricotamide/Tretazicar", - "FGFR4 Inhibitor BLU 9931", - "SR-T100 Gel", - "TIGIT Inhibitor M6223", - "Herbimycin", - "Brachyury-expressing Yeast Vaccine GI-6301", - "Pacritinib", - "2-Hydroxyoleic Acid", - "PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521", - "Pidilizumab", - "Shared Anti-Idiotype-AB-S024A", - "c-Met Inhibitor MK2461", - "Mibefradil", - "CHK1 Inhibitor PF-477736", - "Hsp90 Inhibitor TQB3474", - "Apomine", - "Audencel", - "Mitotenamine", - "Afuresertib", - "Batabulin", - "HDAC Inhibitor OBP-801", - "Limonene; (+)-", - "PSMA-targeted Docetaxel Nanoparticles BIND-014", - "Anti-CD37 MMAE Antibody-drug Conjugate AGS67E", - "CD40 Agonistic Monoclonal Antibody APX005M", - "Dual IGF-1R/InsR Inhibitor BMS-754807", - "Milademetan Tosylate", - "Detorubicin", - "Eicosapentaenoic Acid", - "Lorvotuzumab Mertansine", - "Therapeutic Cancer Vaccine ATP128", - "CSF1R Inhibitor DCC-3014", - "Silmitasertib Sodium", - "Anti-HER2-vc0101 ADC PF-06804103", - "Chiauranib", - "PI3K Alpha/Beta Inhibitor BAY1082439", - "Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119", - "Epcoritamab", - "Telomerase-specific Type 5 Adenovirus OBP-301", - "Anti-PD-L1/IL-15 Fusion Protein KD033", - "Melphalan", - "Pexastimogene Devacirepvec", - "ATM Kinase Inhibitor AZD1390", - "Anti-FGFR4 Monoclonal Antibody U3-1784", - "BTK Inhibitor ARQ 531", - "Anti-CDH6 Antibody-drug Conjugate HKT288", - "Carubicin", - "Anti-CD38-targeted IgG4-attenuated IFNa TAK-573", - "pan-PIM Kinase Inhibitor AZD1208", - "Indole-3-Carbinol", - "Anti-EGFR/DM1 Antibody-drug Conjugate AVID100", - "Anetumab Ravtansine", - "Conatumumab", - "Iodine I 131 Monoclonal Antibody CC49-deltaCH2", - "Anti-CD19 Monoclonal Antibody XmAb5574", - "Sparfosic Acid", - "Therapeutic Angiotensin-(1-7)", - "Liposomal Mitoxantrone Hydrochloride", - "c-Met Inhibitor GST-HG161", - "Tenalisib", - "Recombinant Transforming Growth Factor-Beta", - "Interferon Alfacon-1", - "Anti-PD-1/CD47 Infusion Protein HX009", - "Teroxirone", - "Progestational IUD", - "Veliparib", - "BMS-184476", - "Trofosfamide", - "Irinotecan-Eluting Beads", - "Motesanib", - "Topotecan", - "Oral Sodium Phenylbutyrate", - "Diethylnorspermine", - "Taselisib", - "Antineoplastic Agent Combination SM-88", - "Mobocertinib", - "DPT/BCG/Measles/Serratia/Pneumococcus Vaccine", - "Rindopepimut", - "Autologous Anti-CD19 TAC-T cells TAC01-CD19", - "Src Kinase Inhibitor AP 23846", - "Iadademstat", - "Bispecific Antibody MDX-H210", - "Neoantigen-based Glioblastoma Vaccine", - "L-methylfolate", - "Recombinant Interleukin-18", - "Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B", - "Dexamethasone", - "EGFR Mutant-specific Inhibitor D-0316", - "Lonafarnib", - "Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191", - "Cell Cycle Checkpoint/DNA Repair Antagonist IC83", - "Ipilimumab", - "Antibody-drug Conjugate PF-06647263", - "Ketotrexate", - "MARCKS Protein Inhibitor BIO-11006", - "Saracatinib Difumarate", - "ALK Inhibitor", - "BRD4 Inhibitor PLX51107", - "Cerdulatinib", - "Licorice", - "Oblimersen Sodium", - "Anti-PD-1 Monoclonal Antibody BI 754091", - "Regorafenib", - "Tenifatecan", - "Actinomycin C2", - "VEGF Inhibitor PTC299", - "HIF-2alpha Inhibitor PT2977", - "Anti-TGF-beta RII Monoclonal Antibody IMC-TR1", - "Ontuxizumab", - "Brentuximab Vedotin", - "Sodium Selenite", - "Chloroquine", - "Telapristone", - "Anti-CD38 Monoclonal Antibody TAK-079", - "Canerpaturev", - "Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110", - "Ganetespib", - "Sodium Stibogluconate", - "Ipatasertib", - "Talotrexin", - "Abagovomab", - "Iridium Ir 192", - "Trifluridine", - "BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351", - "Pimasertib", - "Attenuated Listeria monocytogenes CRS-100", - "SMAC Mimetic BI 891065", - "Denibulin", - "Monoclonal Antibody F19", - "Anti-CSF1R Monoclonal Antibody SNDX-6352", - "Bruceanol G", - "2-Ethylhydrazide", - "Ondansetron Hydrochloride", - "Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E", - "Anti-EGFRvIII Antibody Drug Conjugate AMG 595", - "Seviteronel", - "ADH-1", - "Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A", - "Pegfilgrastim", - "NTRK/ROS1 Inhibitor DS-6051b", - "Anti-ErbB3 Antibody ISU104", - "Rhenium Re-186 Hydroxyethylidene Diphosphonate", - "Ets-family Transcription Factor Inhibitor TK216", - "11C Topotecan", - "Microbiome-derived Peptide Vaccine EO2401", - "Anti-CSF1 Monoclonal Antibody PD-0360324", - "Toremifene Citrate", - "O6-Benzylguanine", - "TSP-1 Mimetic Fusion Protein CVX-045", - "Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752", - "Ambamustine", - "Etidronate-Cytarabine Conjugate MBC-11", - "Garlic", - "EGFR Mutant-specific Inhibitor CK-101", - "Phenesterin", - "Patritumab Deruxtecan", - "Depatuxizumab Mafodotin", - "Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F", - "Hycanthone", - "Phospholipid Ether-drug Conjugate CLR 131", - "Anti-CD123 Monoclonal Antibody CSL360", - "Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777", - "Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241", - "Canfosfamide Hydrochloride", - "Fenretinide Phospholipid Suspension ST-001", - "Grapiprant", - "Efatutazone", - "Pimitespib", - "TRPM8 Agonist D-3263", - "Chk1 Inhibitor CCT245737", - "BET Inhibitor CC-90010", - "Anti-IRF4 Antisense Oligonucleotide ION251", - "Anti-PD-1/VEGF Bispecific Antibody AK112", - "CT2584 HMS", - "Tilsotolimod Sodium", - "Relatlimab", - "FMS Inhibitor JNJ-40346527", - "Anti-CD352 Antibody-drug Conjugate SGN-CD352A", - "PRIMA-1 Analog APR-246", - "Kanglaite", - "Daratumumab and Hyaluronidase-fihj", - "Pipendoxifene", - "TIGIT-targeting Agent MK-7684", - "TLC ELL-12", - "14C BMS-275183", - "Yttrium Y-90 Clivatuzumab Tetraxetan", - "NG-nitro-L-arginine", - "Prexigebersen", - "Monoclonal Antibody 11D10 Anti-Idiotype Vaccine", - "Vitamin D3 Analogue ILX23-7553", - "Anti-LAMP1 Antibody-drug Conjugate SAR428926", - "Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells", - "Bicalutamide", - "Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130", - "Nitrogen Mustard Prodrug PR-104", - "Samalizumab", - "Gimatecan", - "Oral Azacitidine", - "Thioguanine Anhydrous", - "Human Monoclonal Antibody 216", - "Imalumab", - "PDK1 Inhibitor AR-12", - "Paclitaxel Vitamin E-Based Emulsion", - "Osilodrostat", - "Cyproterone Acetate", - "Pembrolizumab", - "Emapalumab", - "Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207", - "Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso", - "Shenqi Fuzheng Injection SQ001", - "Thiarabine", - "Autologous AXL-targeted CAR T-cells CCT301-38", - "Clarithromycin", - "Anti-EGFR Monoclonal Antibody HLX-07", - "Tyroserleutide", - "Daromun", - "Xentuzumab", - "Figitumumab", - "Anti-HER2 Bispecific Antibody-drug Conjugate ZW49", - "Etigilimab", - "IL-2 Recombinant Fusion Protein ALT-801", - "Plitidepsin", - "ALK Inhibitor WX-0593", - "Ras Peptide ASP", - "Anti-Melanin Monoclonal Antibody PTI-6D2", - "ERK1/2 Inhibitor LY3214996", - "Soy Isoflavones", - "Anti-ICOS Monoclonal Antibody MEDI-570", - "CAIX Inhibitor DTP348", - "IDO1 Inhibitor KHK2455", - "Rosopatamab", - "Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1", - "EGFR Antisense DNA BB-401", - "Briciclib Sodium", - "Silatecan AR-67", - "mTOR Kinase Inhibitor OSI-027", - "Cemiplimab", - "Pictilisib", - "Peginterferon Alfa-2a", - "Syk Inhibitor HMPL-523", - "Patupilone", - "Lisocabtagene Maraleucel", - "DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151", - "Autologous CD20-4SCAR-expressing T-cells 4SCAR20", - "Retinoic Acid Agent Ro 16-9100", - "Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343", - "Encorafenib", - "North American Ginseng Extract AFX-2", - "TSP-1 Mimetic ABT-510", - "Light-activated AU-011", - "Pepinemab", - "Lifastuzumab Vedotin", - "Esperamicin A1", - "Filgrastim", - "Etoricoxib", - "Anti-CTLA-4 Monoclonal Antibody REGN4659", - "MK0731", - "Palonosetron Hydrochloride", - "Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623", - "Rose Bengal Solution PV-10", - "ATR Kinase Inhibitor M1774", - "DNA-PK/PI3K-delta Inhibitor BR101801", - "Foretinib", - "Clofarabine", - "Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001", - "Plk1 Inhibitor BI 2536", - "Vistusertib", - "Blinatumomab", - "Entrectinib", - "Chk1 Inhibitor GDC-0575", - "Allogeneic Anti-CD19-CAR T-cells PBCAR0191", - "Hypericin", - "PI3K-delta Inhibitor SHC014748M", - "CD47 Antagonist ALX148", - "Zandelisib", - "Immediate-release Onapristone", - "Bcr-Abl Kinase Inhibitor K0706", - "Idarubicin", - "Inosine Monophosphate Dehydrogenase Inhibitor AVN944", - "Devimistat", - "Envafolimab", - "Microbiome GEN-001", - "Natalizumab", - "Paclitaxel PPE Microspheres", - "Upamostat", - "Misonidazole", - "Alemtuzumab", - "Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502", - "Allogeneic Natural Killer Cell Line MG4101", - "Doxorubicin-Eluting Beads", - "Anti-BCMA/PBD ADC MEDI2228", - "Nucleoside Analog DFP-10917", - "Infliximab", - "Topical Trichloroacetic Acid", - "Anti-PD-1 Monoclonal Antibody JTX-4014", - "JNK Inhibitor CC-401", - "Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1", - "Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669", - "CBP/beta-catenin Antagonist PRI-724", - "Lestaurtinib", - "Megestrol Acetate", - "Pevonedistat", - "SHP2 Inhibitor TNO155", - "Aldesleukin", - "Adenosine A2A Receptor Antagonist NIR178", - "Tazemetostat", - "Bimiralisib", - "Cryptophycin 52", - "Mipsagargin", - "Teloxantrone Hydrochloride", - "Oncolytic HSV-1 rQNestin34.5v.2", - "Telisotuzumab Vedotin", - "PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1", - "Anti-CTLA-4 Monoclonal Antibody MK-1308", - "CXC Chemokine Receptor 2 Antagonist AZD5069", - "EGFR T790M Inhibitor HS-10296", - "Piritrexim", - "Patritumab", - "Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A", - "Ifosfamide", - "Dimethylmyleran", - "Green Tea Extract-based Antioxidant Supplement", - "Beta-Carotene", - "Monomethyl Auristatin E", - "PSA/PSMA DNA Plasmid INO-5150", - "TRAIL Receptor Agonist ABBV-621", - "Amsacrine", - "Dexrazoxane Hydrochloride", - "Trilaciclib", - "Src/Abl Kinase Inhibitor AZD0424", - "Everolimus Tablets for Oral Suspension", - "PBN Derivative OKN-007", - "Nelipepimut-S", - "Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine", - "Ivosidenib", - "FPV-Brachyury-TRICOM Vaccine", - "Gemcitabine", - "Multifunctional/Multitargeted Anticancer Agent OMN54", - "7-Hydroxystaurosporine", - "Anti-ILDR2 Monoclonal Antibody BAY 1905254", - "Gemcitabine Elaidate", - "Adenosine A2A Receptor Antagonist AZD4635", - "AKT 1/2 Inhibitor BAY1125976", - "Daunorubicin Hydrochloride", - "Irinotecan Sucrosofate", - "Lazertinib", - "Oncolytic HSV-1 G207", - "G Protein-coupled Estrogen Receptor Agonist LNS8801", - "Apilimod Dimesylate Capsule", - "THL-P", - "Digitoxin", - "Recombinant Bispecific Single-Chain Antibody rM28", - "Peplomycin", - "Uncaria tomentosa Extract", - "RSK1-4 Inhibitor PMD-026", - "Diazooxonorleucine", - "WT1-A10/AS01B Immunotherapeutic GSK2130579A", - "Dendritic Cell-targeting Lentiviral Vector ID-LV305", - "Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017", - "Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F", - "Anti-EGFR TAP Antibody-drug Conjugate IMGN289", - "Carboquone", - "LMP-2", - "Survivin-expressing CVD908ssb-TXSVN Vaccine", - "Asparaginase Erwinia chrysanthemi", - "Zotiraciclib Citrate", - "Binetrakin", - "Tipapkinogene Sovacivec", - "Sparfosate Sodium", - "Palifosfamide Tromethamine", - "Vandortuzumab Vedotin", - "Anti-PD-1 Monoclonal Antibody BCD-100", - "Angiopoietin-2-specific Fusion Protein PF-04856884", - "PI3K-delta Inhibitor YY-20394", - "CDK4/6 Inhibitor BPI-16350", - "Anti-HER2 Monoclonal Antibody CT-P6", - "SERD GDC-9545", - "MET Tyrosine Kinase Inhibitor SGX523", - "PARP 1/2 Inhibitor NOV1401", - "Tubulin Polymerization Inhibitor AEZS 112", - "Cyclodextrin-Based Polymer-Camptothecin CRLX101", - "Corticorelin Acetate", - "Thioguanine", - "Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307", - "PI3K p110beta/delta Inhibitor KA2237", - "ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471", - "I 131 Monoclonal Antibody CC49", - "Masoprocol", - "Ruthenium-based Transferrin Targeting Agent NKP-1339", - "Bispecific Antibody MDX447", - "Autologous Dendritic Cell Vaccine ACT2001", - "mTORC 1/2 Inhibitor LXI-15029", - "NLRP3 Agonist BMS-986299", - "B-Raf/VEGFR-2 Inhibitor RAF265", - "Chk1 Inhibitor GDC-0425", - "Talazoparib", - "Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes", - "Vemurafenib", - "Tropomyosin Receptor Kinase Inhibitor AZD7451", - "Cytarabine", - "Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19", - "Pegylated Liposomal Doxorubicin Hydrochloride", - "Retinoid 9cUAB30", - "Anti-PVRIG Monoclonal Antibody COM701", - "Apomab", - "Renal Cell Carcinoma Peptides Vaccine IMA901", - "Cintirorgon", - "MKNK1 Inhibitor BAY 1143269", - "Tabelecleucel", - "Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012", - "Apoptosis Inducer BZL101", - "Namirotene", - "Dacetuzumab", - "EGFR/TGFb Fusion Monoclonal Antibody BCA101", - "Amifostine", - "IGF-1R/IR Inhibitor KW-2450", - "Naptumomab Estafenatox", - "Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22", - "Ad-RTS-hIL-12", - "Bruceantin", - "Lurtotecan Liposome", - "Telapristone Acetate", - "Vincristine", - "Trastuzumab/Hyaluronidase-oysk", - "Asunercept", - "Methoxsalen", - "INO-1001", - "Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076", - "Alsevalimab", - "Calcium Release-activated Channels Inhibitor RP4010", - "VEGFR-2 DNA Vaccine VXM01", - "Defactinib", - "Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001", - "Tovetumab", - "Ranpirnase", - "BTK Inhibitor HZ-A-018", - "Vosilasarm", - "Telatinib Mesylate", - "Alvocidib Prodrug TP-1287", - "Rovalpituzumab Tesirine", - "Wnt-5a Mimic Hexapeptide Foxy-5", - "Anti-MUC17/CD3 BiTE Antibody AMG 199", - "Lenvatinib Mesylate", - "Anti-CD70 Antibody-Drug Conjugate MDX-1203", - "Retinyl Acetate", - "Roflumilast", - "Topotecan Hydrochloride", - "Anti-S15 Monoclonal Antibody NC318", - "EGFR/HER2 Inhibitor AP32788", - "Azotomycin", - "Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11", - "S-Adenosylmethionine", - "Anti-CD46 Antibody-drug Conjugate FOR46", - "Vinblastine", - "Deslorelin", - "Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736", - "PCNU", - "Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4", - "Dynemicin A", - "Extended Release Metformin Hydrochloride", - "Gossypol", - "Anti-CTLA-4 Monoclonal Antibody HBM4003", - "Afatinib", - "Iodine I 124 Monoclonal Antibody M5A", - "Neoantigen Vaccine GEN-009", - "Stallimycin", - "Bermekimab", - "Remetinostat", - "Staphylococcal Enterotoxin A", - "Anti-PSMA/CD28 Bispecific Antibody REGN5678", - "Autologous NKG2D CAR T-cells CYAD-02", - "Alpelisib", - "Demplatin Pegraglumer", - "Aldoxorubicin", - "Panulisib", - "Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP", - "Bemcentinib", - "Denintuzumab Mafodotin", - "GM-CSF-encoding Oncolytic Adenovirus CGTG-102", - "STING Agonist IMSA101", - "Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C", - "CDK1 Inhibitor BEY1107", - "Abemaciclib", - "Copper Cu 67 Tyr3-octreotate", - "Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564", - "Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL", - "Durvalumab", - "Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A", - "Pixantrone", - "Esterified Estrogens", - "MYC-targeting siRNA DCR-MYC", - "Rebeccamycin", - "Falimarev", - "Liarozole Fumarate", - "STAT3 Inhibitor OPB-31121", - "Ceramide Nanoliposome", - "CSF1R Inhibitor ABSK021", - "LMB-7 Immunotoxin", - "Annamycin Liposomal", - "MNK1/2 Inhibitor ETC-1907206", - "Clostridium Novyi-NT Spores", - "Monalizumab", - "Enzastaurin", - "Vocimagene Amiretrorepvec", - "Aniline Mustard", - "Huaier Extract Granule", - "Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225", - "Ibrutinib", - "Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94", - "Anti-CD137 Agonistic Monoclonal Antibody AGEN2373", - "LMB-2 Immunotoxin", - "Tirbanibulin", - "Vantictumab", - "Alobresib", - "NY-ESO-1/GLA-SE Vaccine ID-G305", - "Dociparstat sodium", - "Akt Inhibitor LY2780301", - "Capecitabine Rapidly Disintegrating Tablet", - "Thioredoxin-1 Inhibitor PX-12", - "Xisomab 3G3", - "Staphylococcal Enterotoxin B", - "IRAK4 Inhibitor CA-4948", - "Autologous Anti-PSMA CAR-T Cells P-PSMA-101", - "Rhenium Re-188 Ethiodized Oil", - "CDK4/6 Inhibitor FCN-437", - "Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601", - "Nogalamycin", - "Ralimetinib Mesylate", - "Therapeutic Liver Cancer Peptide Vaccine IMA970A", - "Dienogest", - "PGLA/PEG Copolymer-Based Paclitaxel", - "Lutetium Lu 177-NeoB", - "Dendritic Cell-Autologous Lung Tumor Vaccine", - "Dacplatinum", - "Eribulin Mesylate", - "Neoantigen-based Melanoma-Poly-ICLC Vaccine", - "Pelareorep", - "Topical Potassium Dobesilate", - "TORC1/2 Kinase Inhibitor DS-3078a", - "ERK Inhibitor CC-90003", - "Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707", - "BMI1 Inhibitor PTC596", - "Cusatuzumab", - "Anti-CD33/CD3 BiTE Antibody AMG 330", - "Liposome-encapsulated Daunorubicin-Cytarabine", - "Abituzumab", - "Nanoparticle-based Paclitaxel Suspension", - "BRAF Inhibitor PLX8394", - "Anti-human GITR Monoclonal Antibody AMG 228", - "Cladribine", - "Alpha V Beta 8 Antagonist PF-06940434", - "Vadastuximab Talirine", - "Anti-DR5 Agonistic Antibody DS-8273a", - "Ceritinib", - "PARP Inhibitor E7016", - "Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404", - "Trapoxin", - "Voxtalisib", - "Pan-FGFR Inhibitor LY2874455", - "Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123", - "Ensartinib", - "Tegafur-gimeracil-oteracil Potassium", - "Terfluranol", - "Anti-FLT3 Monoclonal Antibody IMC-EB10", - "Autologous CD19-targeted CAR T Cells JWCAR029", - "Docetaxel Formulation CKD-810", - "IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1", - "pan-RAF Kinase Inhibitor CCT3833", - "Prostate Cancer Vaccine ONY-P1", - "Topotecan Sustained-release Episcleral Plaque", - "Polyamine Analog SL11093", - "Pibenzimol", - "Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a", - "Gastrin Immunotoxin", - "Altiratinib", - "FGFR4 Antagonist INCB062079", - "Mirvetuximab Soravtansine", - "SR-BP1/HSI Inhibitor SR31747A", - "EP4 Antagonist INV-1120", - "Simurosertib", - "Anti-PD-L1 Monoclonal Antibody HLX20", - "Aurora Kinase Inhibitor AMG 900", - "BET Inhibitor CPI-0610", - "Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s", - "ERK1/2 Inhibitor KO-947", - "HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C", - "Topical Celecoxib", - "Danusertib", - "Hydrocortisone Sodium Succinate", - "Bintrafusp Alfa", - "Cintredekin Besudotox", - "CD73 Inhibitor AB680", - "Fluoxymesterone", - "Anti-DR5 Agonistic Monoclonal Antibody INBRX-109", - "Icotinib Hydrochloride", - "Abiraterone Acetate", - "Brilanestrant", - "Fluvastatin Sodium", - "STAT3 Inhibitor WP1066", - "Losatuxizumab Vedotin", - "Vibostolimab", - "HSP90-targeted SN-38 Conjugate PEN-866", - "Anti-EGFR Monoclonal Antibody GC1118", - "Cyclopentenyl Cytosine", - "Rogletimide", - "Calcitriol", - "Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101", - "Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation", - "Gossypol Acetic Acid", - "Docetaxel-PNP", - "Autologous Multi-lineage Potential Cells", - "MEK 1/2 Inhibitor FCN-159", - "Tandutinib", - "Topoisomerase I Inhibitor LMP400", - "Silibinin", - "Anti-PD-L1 Monoclonal Antibody CS1001", - "Immunotoxin CMD-193", - "Qilisheng Immunoregulatory Oral Solution", - "Denenicokin", - "Pinatuzumab Vedotin", - "XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410", - "Etirinotecan Pegol", - "Anti-EGFRvIII/CD3 BiTE Antibody AMG 596", - "Nilotinib Hydrochloride Anhydrous", - "Gamboge Resin Extract TSB-9-W1", - "Extended-release Onapristone", - "Anti-GITR Agonistic Monoclonal Antibody ASP1951", - "Anti-CD45 Monoclonal Antibody AHN-12", - "Monoclonal Antibody muJ591", - "Naquotinib", - "Cancell", - "Methylprednisolone Sodium Succinate", - "Opucolimab", - "Rezivertinib", - "Indisulam", - "Phaleria macrocarpa Extract DLBS-1425", - "Tyrosine Kinase Inhibitor SU5402", - "Anti-CD38 Monoclonal Antibody MOR03087", - "PSMA-targeted Tubulysin B-containing Conjugate EC1169", - "Fedratinib", - "MDR Modulator CBT-1", - "Degarelix Acetate", - "Methanol Extraction Residue of BCG", - "Pol I Inhibitor CX5461", - "Pegylated Deoxycytidine Analogue DFP-14927", - "Valspodar", - "Cannabidiol", - "KRASG12C Inhibitor JNJ-74699157", - "Apolizumab", - "EZH2 Inhibitor SHR2554", - "HDAC8 Inhibitor NBM-BMX", - "Anti-OX40 Hexavalent Agonist Antibody INBRX-106", - "mRNA-derived Lung Cancer Vaccine BI 1361849", - "Cytokine-based Biologic Agent IRX-2", - "Vorinostat", - "Medroxyprogesterone Acetate", - "Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88", - "Squalamine Lactate", - "Anti-VEGF Monoclonal Antibody hPV19", - "Selective Estrogen Receptor Modulator CC-8490", - "Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044", - "Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet", - "Yttrium Y 90 Monoclonal Antibody Hu3S193", - "IAP Inhibitor APG-1387", - "Decitabine", - "Anti-CD20/CD3 Monoclonal Antibody XmAb13676", - "BET Inhibitor INCB057643", - "Isocoumarin NM-3", - "Acai Berry Juice", - "Anti-mesothelin Antibody-drug Conjugate BMS-986148", - "Duligotuzumab", - "Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC", - "Pirfenidone", - "Trimetrexate Glucuronate", - "PARP Inhibitor AZD2461", - "ARC Fusion Protein SL-279252", - "Capecitabine", - "Anti-CEACAM1 Monoclonal Antibody CM-24", - "Norgestrel", - "Axitinib", - "Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181", - "Personalized Cancer Vaccine RO7198457", - "Aurora Kinase Inhibitor SNS-314", - "Sodium Phenylbutyrate", - "Heparan Sulfate Glycosaminoglycan Mimetic M402", - "Cinrebafusp Alfa", - "Linsitinib", - "Sustained-release Lipid Inhaled Cisplatin", - "P-cadherin Inhibitor PCA062", - "WT1 Peptide Vaccine WT2725", - "Glioblastoma Cancer Vaccine ERC1671", - "Dual Variable Domain Immunoglobulin ABT-165", - "Calcium Saccharate", - "Immunomodulatory Oligonucleotide HYB2055", - "9-Ethyl 6-Mercaptopurine", - "Pegylated Recombinant Interleukin-2 THOR-707", - "Phosphaplatin PT-112", - "Polo-like Kinase 1 Inhibitor NMS-1286937", - "SIRPa-IgG4-Fc Fusion Protein TTI-622", - "Anti-GRP78 Monoclonal Antibody PAT-SM6", - "Paricalcitol", - "Anti-Ribonucleoprotein Antibody ATRC-101", - "MEK Inhibitor WX-554", - "Cetuximab Sarotalocan", - "Monoclonal Antibody A27.15", - "Tariquidar", - "Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12", - "Amuvatinib", - "Entolimod", - "Lutetium Lu-177 Rituximab", - "Aurora Kinase Inhibitor BI 811283", - "Bcl-2 Inhibitor LP-108", - "Anti-TIM3 Monoclonal Antibody SHR-1702", - "PV-10", - "Leucovorin", - "2-Methoxyestradiol Nanocrystal Colloidal Dispersion", - "Recombinant Thyrotropin Alfa", - "Sorghum bicolor Supplement", - "Iniparib", - "Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372", - "Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111", - "Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules", - "Trioxifene", - "Bafetinib", - "BCG Tokyo-172 Strain Solution", - "Anti-CD30 Monoclonal Antibody MDX-1401", - "Monoclonal Antibody 1F5", - "Monoclonal Antibody IMMU-14", - "MEK-1/MEKK-1 Inhibitor E6201", - "Peptichemio", - "Recombinant Human Adenovirus Type 5 H101", - "MUC1-targeted Peptide GO-203-2C", - "Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8", - "Sargramostim", - "Oral Microencapsulated Diindolylmethane", - "Anti-mesothelin/MMAE Antibody-drug Conjugate RC88", - "FLT3 Inhibitor FF-10101 Succinate", - "Orantinib", - "LSD1 Inhibitor RO7051790", - "pan-HER Kinase Inhibitor AC480", - "Allogeneic Cellular Vaccine 1650-G", - "Monoclonal Antibody A33", - "Porcupine Inhibitor ETC-1922159", - "Smoothened Antagonist LDE225 Topical", - "4-Nitroestrone 3-Methyl Ether", - "Eniluracil/5-FU Combination Tablet", - "Filgotinib", - "Perflenapent Emulsion", - "Atrasentan Hydrochloride", - "CDK4/6 Inhibitor TQB3616", - "Vitamin E Compound", - "Palifosfamide", - "Mercaptopurine", - "2-O; 3-O Desulfated Heparin", - "Smac Mimetic GDC-0152", - "I 131 Monoclonal Antibody A33", - "EphA2-targeting Bicycle Toxin Conjugate BT5528", - "MVA-FCU1 TG4023", - "PARP7 Inhibitor RBN-2397", - "Porcupine Inhibitor RXC004", - "Sunitinib", - "Multipeptide Vaccine S-588210", - "Anti-LAG-3 Monoclonal Antibody LAG525", - "LSD1 Inhibitor GSK2879552", - "Anti-ANG2 Monoclonal Antibody MEDI-3617", - "p53 Peptide Vaccine MPS-128", - "Dactinomycin", - "PARP Inhibitor NMS-03305293", - "Anti-HER2 Antibody-drug Conjugate A166", - "Prednisolone Acetate", - "IGF-1R Inhibitor", - "Solitomab", - "Anti-NaPi2b Antibody-drug Conjugate XMT-1592", - "Estradiol Valerate", - "Monoclonal Antibody 81C6", - "Cesalin", - "Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101", - "Lutetium Lu 177 Lilotomab-satetraxetan", - "Teclistamab", - "Trastuzumab Deruxtecan", - "Darolutamide", - "ALK Inhibitor ASP3026", - "Parsaclisib", - "SHP2 Inhibitor JAB-3068", - "Vinfosiltine", - "CDC7 Kinase Inhibitor NMS-1116354", - "Zanidatamab", - "Zotatifin", - "HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN", - "Anti-IL-1 alpha Monoclonal Antibody MABp1", - "Autologous Dendritic Cell-based Immunotherapeutic AV0113", - "CK2-targeting Synthetic Peptide CIGB-300", - "Submicron Particle Paclitaxel Sterile Suspension", - "Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257", - "Hedgehog Inhibitor IPI-609", - "Anti-C5aR Monoclonal Antibody IPH5401", - "Pan-IDH Mutant Inhibitor AG-881", - "Fc-engineered Anti-CD40 Agonist Antibody 2141-V11", - "PSA/IL-2/GM-CSF Vaccine", - "Bispecific Antibody AMG 509", - "Sirolimus", - "MEK 1/2 Inhibitor AS703988/MSC2015103B", - "Selpercatinib", - "Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19", - "Liposomal Vinorelbine", - "PLK1 Inhibitor TAK-960", - "Octreotide Acetate", - "Selective Estrogen Receptor Degrader LX-039", - "Itacitinib", - "Aceglatone", - "FLT3/KIT Kinase Inhibitor AKN-028", - "UAE Inhibitor TAK-243", - "Taxol Analogue SID 530", - "Anti-CD19 Monoclonal Antibody MEDI-551", - "Anti-CD37 Bispecific Monoclonal Antibody GEN3009", - "Anti-CD47 Monoclonal Antibody Hu5F9-G4", - "Aprutumab Ixadotin", - "Calaspargase Pegol-mknl", - "Canertinib Dihydrochloride", - "Gimeracil", - "Hsp90 Inhibitor BIIB021", - "Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes", - "Etoprine", - "Ixabepilone", - "Anti-PD-L1 Monoclonal Antibody CK-301", - "Anti-sCLU Monoclonal Antibody AB-16B5", - "Anti-PD-1/Anti-LAG-3 DART Protein MGD013", - "12-Allyldeoxoartemisinin", - "Nilotinib Hydrochloride Monohydrate", - "Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981", - "Anti-TIM-3 Antibody BMS-986258", - "Deoxycytidine Analogue TAS-109 Hydrochloride", - "MEK Inhibitor SHR 7390", - "Rhenium Re 188 BMEDA-labeled Liposomes", - "HDAC Inhibitor AR-42", - "Ditiocarb", - "Iodine I 131 Monoclonal Antibody BC8", - "Magrolimab", - "Doxorubicin Prodrug L-377;202", - "Troriluzole", - "Pegzilarginase", - "Febuxostat", - "ERK Inhibitor MK-8353", - "DNA Minor Groove Binding Agent SG2000", - "Pyrazoloacridine", - "Anti-HLA-G Antibody TTX-080", - "Anti-PD-1 Monoclonal Antibody 609A", - "Dichloroallyl Lawsone", - "Lysine-specific Demethylase 1 Inhibitor INCB059872", - "IDO/TDO Inhibitor HTI-1090", - "Cantrixil", - "Acivicin", - "ERK1/2 Inhibitor JSI-1187", - "Ilginatinib", - "Tubulin Inhibitor ALB-109564", - "Diindolylmethane", - "Zorubicin Hydrochloride", - "Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256", - "IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051", - "Anti-TROP2 Antibody-drug Conjugate BAT8003", - "BET Inhibitor GS-5829", - "Hafnium Oxide-containing Nanoparticles NBTXR3", - "Mapatumumab", - "Anti-CTLA-4 Monoclonal Antibody BCD-145", - "Mezagitamab", - "Yttrium Y 90 Tabituximab Barzuxetan", - "XIAP/cIAP1 Antagonist ASTX660", - "Luminespib Mesylate", - "Motolimod", - "Zirconium Zr 89 Panitumumab", - "Sumoylation Inhibitor TAK-981", - "Angiogenesis Inhibitor GT-111", - "Empesertib", - "Liarozole Hydrochloride", - "Anti-TIM-3 Monoclonal Antibody INCAGN02390", - "Dexrazoxane", - "Not Otherwise Specified", - "Birinapant", - "Burixafor Hydrobromide", - "Enasidenib Mesylate", - "Glasdegib Maleate", - "Micellar Nanoparticle-encapsulated Epirubicin", - "Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx", - "Recombinant Interferon Gamma", - "TAM/c-Met Inhibitor RXDX-106", - "Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327", - "Teprotumumab", - "IDO1/TDO2 Inhibitor DN1406131", - "BR96-Doxorubicin Immunoconjugate", - "Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201", - "Trametinib Dimethyl Sulfoxide", - "Anti-PD-L1 Monoclonal Antibody GR1405", - "Spebrutinib", - "MKC-1", - "Sho-Saiko-To", - "FASN Inhibitor TVB-2640", - "Ricolinostat", - "Anti-BCMA Antibody-drug Conjugate CC-99712", - "Integrin alpha-2 Inhibitor E7820", - "Fosbretabulin Tromethamine", - "mRNA-derived KRAS-targeted Vaccine V941", - "Arsenic Trioxide Capsule Formulation ORH 2014", - "Motexafin Gadolinium", - "mRNA-based TriMix Melanoma Vaccine ECI-006", - "NAMPT Inhibitor OT-82", - "mRNA-derived Prostate Cancer Vaccine CV9104", - "CYP17 Inhibitor CFG920", - "Autologous TCRm-expressing T-cells ET140203", - "Botanical Agent BEL-X-HG", - "LAIR-2 Fusion Protein NC410", - "Recombinant Oncolytic Poliovirus PVS-RIPO", - "Oncolytic Adenovirus Ad5-DNX-2401", - "Tertomotide", - "Clomesone", - "Fosquidone", - "Dibrospidium Chloride", - "Sobuzoxane", - "Anti-HBEGF Monoclonal Antibody U3-1565", - "Anti-CD20 Monoclonal Antibody SCT400", - "Artesunate", - "FACT Complex-targeting Curaxin CBL0137", - "Deoxycytidine Analogue TAS-109", - "Limonene; (+/-)-", - "Rivoceranib", - "Anti-CD47 Monoclonal Antibody SHR-1603", - "Inotuzumab Ozogamicin", - "Anti-TIGIT Monoclonal Antibody SGN-TGT", - "Immediate-release Tablet Afuresertib", - "Emibetuzumab", - "Metformin", - "Alefacept", - "Mifamurtide", - "Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001", - "Concentrated Lingzhi Mushroom Extract", - "Gemcitabine Hydrochloride", - "Anti-CTGF Monoclonal Antibody FG-3019", - "Anti-GITR Monoclonal Antibody GWN 323", - "Anti-PD-1/Anti-CTLA4 DART Protein MGD019", - "Oltipraz", - "Anti-HER2 Immune Stimulator-antibody Conjugate NJH395", - "9H-Purine-6Thio-98D", - "TRK Inhibitor TQB3558", - "Anti-Met Monoclonal Antibody Mixture Sym015", - "iPSC-derived CD16-expressing Natural Killer Cells FT516", - "Anti-PD-L1 Monoclonal Antibody LY3300054", - "MEK Inhibitor RO4987655", - "S-equol", - "Pladienolide Derivative E7107", - "Src Kinase Inhibitor KX2-391 Ointment", - "Tosedostat", - "Valrubicin", - "CYP11A1 inhibitor ODM-208", - "Roniciclib", - "Sodium Borocaptate", - "Zolbetuximab", - "Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141", - "Monoclonal Antibody 3H1 Anti-Idiotype Vaccine", - "CpG Oligodeoxynucleotide GNKG168", - "Yttrium Y 90-DOTA-di-HSG Peptide IMP-288", - "FLT3 Tyrosine Kinase Inhibitor TTT-3002", - "Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006", - "Y 90 Monoclonal Antibody M195", - "CYP17 Lyase Inhibitor ASN001", - "Infigratinib Mesylate", - "Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230", - "Agonistic Anti-CD40 Monoclonal Antibody ADC-1013", - "Copanlisib Hydrochloride", - "MEK Inhibitor HL-085", - "CDK2/4/6/FLT3 Inhibitor FN-1501", - "Oncolytic Newcastle Disease Virus MTH-68H", - "Anti-PSCA Monoclonal Antibody AGS-1C4D4", - "Anti-CD47 Monoclonal Antibody TJC4", - "Rogaratinib", - "Taurultam", - "Taurultam Analogue GP-2250", - "Oglufanide Disodium", - "Lefitolimod", - "Belimumab", - "Nanoparticle Paclitaxel Ointment SOR007", - "Nesvacumab", - "Padeliporfin", - "Liposome-Encapsulated Doxorubicin Citrate", - "Cold Contaminant-free Iobenguane I-131", - "Rosuvastatin", - "Axatilimab", - "Notch Signaling Inhibitor PF-06650808", - "Anti-EGFR Monoclonal Antibody SCT200", - "Raloxifene Hydrochloride", - "Modotuximab", - "Anti-CD20 Monoclonal Antibody B001", - "c-Met Inhibitor JNJ-38877605", - "Anti-Tissue Factor Monoclonal Antibody MORAb-066", - "Topixantrone", - "Glucocorticoid Receptor Antagonist ORIC-101", - "Superoxide Dismutase Mimetic GC4711", - "Etoposide Phosphate", - "Lyophilized Black Raspberry Saliva Substitute", - "Taladegib", - "PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480", - "Repotrectinib", - "MALT1 Inhibitor JNJ-67856633", - "Anti-c-MET Monoclonal Antibody LY2875358", - "Anti-CD123/CD3 BiTE Antibody SAR440234", - "Anhydrous Enol-oxaloacetate", - "Indicine-N-Oxide", - "Licartin", - "Liposomal c-raf Antisense Oligonucleotide", - "Strontium Chloride Sr-89", - "Nelipepimut-S Plus GM-CSF Vaccine", - "Tilogotamab", - "Acalisib", - "Molibresib Besylate", - "Anti-PKN3 siRNA Atu027", - "Zoptarelin Doxorubicin", - "Personalized Peptide Cancer Vaccine NEO-PV-01", - "Anti-B7-H4 Monoclonal Antibody FPA150", - "Plicamycin", - "GSK-3 Inhibitor LY2090314", - "Simmitinib", - "Anti-EGP-2 Immunotoxin MOC31-PE", - "FAK Inhibitor VS-4718", - "Anti-CD30/DM1 Antibody-drug Conjugate F0002", - "Anti-GD3 Antibody-drug Conjugate PF-06688992", - "Dinaciclib", - "Acyclic Nucleoside Phosphonate Prodrug ABI-1968", - "Allodepleted T Cell Immunotherapeutic ATIR101", - "ALK/TRK Inhibitor TSR-011", - "Alpha-tocopheryloxyacetic Acid", - "GITR Agonist MEDI1873", - "Losoxantrone", - "Givinostat", - "Antibody-drug Conjugate SC-005", - "Nimotuzumab", - "Pegylated Recombinant Human Hyaluronidase PH20", - "Clinical Trial Agent", - "Fimaporfin A", - "Eflornithine Hydrochloride", - "MEK Inhibitor TAK-733", - "Mibefradil Dihydrochloride", - "Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody", - "Idetrexed", - "DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015", - "Imgatuzumab", - "Androgen Receptor Degrader ARV-110", - "Doxazosin", - "Momelotinib", - "Mycophenolic Acid", - "Pegylated Paclitaxel", - "Tinzaparin Sodium", - "Erythrocyte-encapsulated L-asparaginase Suspension", - "STING Agonist TAK-676", - "Anti-CD52 Monoclonal Antibody ALLO-647", - "Anti-OX40 Monoclonal Antibody IBI101", - "Anti-Claudin18.2 Monoclonal Antibody TST001", - "Carboxyamidotriazole", - "Benzaldehyde Dimethane Sulfonate", - "IDH1R132H-Specific Peptide Vaccine PEPIDH1M", - "Sapacitabine", - "Synchrotope TA2M Plasmid DNA Vaccine", - "Hemiasterlin Analog E7974", - "Antibody-drug Conjugate SC-007", - "Cedazuridine", - "Chromomycin A3", - "Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282", - "Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342", - "Rituximab and Hyaluronidase Human", - "Anti-CD123/CD3 Bispecific Antibody APVO436", - "Seneca Valley Virus-001", - "JAK2 Inhibitor AZD1480", - "SERD G1T48", - "Anti-c-Met Antibody-drug Conjugate HTI-1066", - "Piritrexim Isethionate", - "Aminocamptothecin Colloidal Dispersion", - "Anti-PD-1 Monoclonal Antibody HLX10", - "Anti-CD33/CD3 Bispecific Antibody JNJ-67571244", - "Monoclonal Antibody MX35 F(ab')2", - "RIPK1 Inhibitor GSK3145095", - "Samotolisib", - "Polysaccharide-K", - "MDM2/MDMX Inhibitor ALRN-6924", - "mTORC1/mTORC2/DHFR Inhibitor ABTL0812", - "Golotimod", - "Anti-CTLA4 Monoclonal Antibody BMS-986218", - "DKK1-Neutralizing Monoclonal Antibody DKN-01", - "2-Hydroxyestrone", - "I 131 Monoclonal Antibody Lym-1", - "PAK4/NAMPT Inhibitor KPT-9274", - "Troglitazone", - "MMP Inhibitor S-3304", - "Estramustine", - "Macimorelin", - "Autologous CD38-4SCAR-expressing T-cells 4SCAR38", - "Anti-ICAM-1 Monoclonal Antibody BI-505", - "Girentuximab", - "Itraconazole", - "KRAS-MAPK Signaling Pathway Inhibitor JAB-3312", - "Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564", - "Lenalidomide", - "Sabatolimab", - "Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055", - "EGFR Mutant-specific Inhibitor ZN-e4", - "Trimethylcolchicinic Acid", - "PRMT5 Inhibitor PRT811", - "Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244", - "FLT3 Inhibitor HM43239", - "Larotrectinib", - "Src Kinase Inhibitor KX2-391", - "3'-dA Phosphoramidate NUC-7738", - "Ropidoxuridine", - "Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022", - "Liposomal Curcumin", - "CEA-targeting Agent RG6123", - "Shared Anti-Idiotype-AB-S006", - "Anti-CD137 Agonistic Monoclonal Antibody CTX-471", - "Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11", - "Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205", - "Erbulozole", - "Trastuzumab-TLR 7/8 Agonist BDC-1001", - "Paclitaxel Injection Concentrate for Nanodispersion", - "Uzansertib", - "LOXL2 Inhibitor PAT-1251", - "Inulin", - "Anti-ErbB3 Monoclonal Antibody CDX-3379", - "Camptothecin Glycoconjugate BAY 38-3441", - "Anti-HER2 Antibody-drug Conjugate MEDI4276", - "Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200", - "Androgen Receptor Antagonist SHR3680", - "Dihydrolenperone", - "Imexon", - "Safingol", - "Vapreotide", - "Olaptesed Pegol", - "BET Inhibitor ABBV-744", - "Autologous TCR-engineered T-cells IMA203", - "CDK Inhibitor AT7519", - "DAB389 Epidermal Growth Factor", - "HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901", - "ERK1/2 Inhibitor HH2710", - "Nemorubicin", - "N-dihydrogalactochitosan", - "Tamoxifen", - "CDK4/6 Inhibitor SHR6390", - "Triapine", - "Sasanlimab", - "Retinol", - "Tiomolibdate Diammonium", - "Monoclonal Antibody CEP-37250/KHK2804", - "Pegylated SN-38 Conjugate PLX038", - "Vincristine Sulfate Liposome", - "Src Kinase Inhibitor M475271", - "Recombinant Interleukin-2", - "Onartuzumab", - "Angiogenesis/Heparanase Inhibitor PG545", - "Phellodendron amurense Bark Extract", - "Survivin Antigen Vaccine DPX-Survivac", - "Monoclonal Antibody 14G2A", - "TLR Agonist BDB001", - "Metformin Hydrochloride", - "Anti-BTLA Monoclonal Antibody TAB004", - "Liposomal Cytarabine", - "Tremelimumab", - "Irosustat", - "Aglatimagene Besadenovec", - "Antisense Oligonucleotide GTI-2040", - "Sotrastaurin", - "USP14/UCHL5 Inhibitor VLX1570", - "N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea", - "Lacutamab", - "Patidegib", - "Polyamine Analogue PG11047", - "huBC1-huIL12 Fusion Protein AS1409", - "Fenretinide", - "Anti-LILRB4 Monoclonal Antibody IO-202", - "CDK4/6 Inhibitor", - "Atiprimod Dihydrochloride", - "Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087", - "CDK1/2/4 Inhibitor AG-024322", - "Combretastatin", - "MEK inhibitor CS3006", - "ATR Kinase Inhibitor BAY1895344", - "Recombinant Erwinia asparaginase JZP-458", - "Recombinant Luteinizing Hormone", - "Peposertib", - "Numidargistat", - "Niacinamide", - "Anti-HER2 Antibody-drug Conjugate DP303c", - "Elsamitrucin", - "Thiotepa", - "Zalutumumab", - "Pyrotinib Dimaleate", - "Anti-HER2 Antibody-drug Conjugate ARX788", - "BH3 Mimetic ABT-737", - "Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E", - "Plozalizumab", - "Mocetinostat", - "PI3K/mTOR Kinase Inhibitor PF-04691502", - "Mirabegron", - "Aprutumab", - "Ras Peptide CYS", - "EZH1/2 Inhibitor DS-3201", - "Paclitaxel Poliglumex", - "Thalidomide", - "St. John's Wort", - "Innate Immunostimulator rBBX-01", - "Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a", - "Volociximab", - "Bufalin", - "MAGE-A3 Peptide Vaccine", - "Etaracizumab", - "CXCR4 Inhibitor Q-122", - "Nivolumab", - "Brequinar", - "Anti-OX40 Agonist Monoclonal Antibody PF-04518600", - "Pracinostat", - "Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX", - "Therapeutic Hydrocortisone", - "Ulixertinib", - "Super Enhancer Inhibitor GZ17-6.02", - "Peginterferon Alfa-2b", - "Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918", - "Puromycin", - "HER2 Inhibitor DZD1516", - "c-Met Inhibitor AMG 208", - "Intetumumab", - "Anti-OX40 Agonist Monoclonal Antibody ABBV-368", - "Anlotinib Hydrochloride", - "Clomiphene Citrate", - "Anti-GnRH Vaccine PEP223", - "Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100", - "Nanocell-encapsulated miR-16-based microRNA Mimic", - "Melanoma TRP2 CTL Epitope Vaccine SCIB1", - "Ilixadencel", - "MetAP2 Inhibitor SDX-7320", - "Lutetium Lu-177 PSMA-R2", - "N-Methylformamide", - "Streptonigrin", - "BC-819 Plasmid/Polyethylenimine Complex", - "Interferon", - "Lutetium Lu 177 Satoreotide Tetraxetan", - "Avadomide", - "Anti-CTLA-4 Monoclonal Antibody ADU-1604", - "Methylmercaptopurine Riboside", - "Anti-FLT3/CD3 BiTE Antibody AMG 427", - "Fumagillin-Derived Polymer Conjugate XMT-1107", - "4'-Iodo-4'-Deoxydoxorubicin", - "Apricoxib", - "Laniquidar", - "Quisinostat", - "TLR Agonist BSG-001", - "RAF Kinase Inhibitor XL281", - "Recombinant Interferon Beta", - "Brivanib", - "Selitrectinib", - "Triptolide Analog", - "CD123-specific Targeting Module TM123", - "Imetelstat Sodium", - "AKR1C3-activated Prodrug OBI-3424", - "STING Agonist MK-1454", - "Pan-AKT Inhibitor ARQ751", - "EGFR Inhibitor DBPR112", - "2;6-Diaminopurine", - "Nedaplatin", - "Anti-CD98 Monoclonal Antibody IGN523", - "Microtubule Inhibitor SCB01A", - "Abarelix", - "Copanlisib", - "Ridaforolimus", - "Venetoclax", - "PLK1 Inhibitor CYC140", - "Feladilimab", - "Alectinib", - "Fibromun", - "Indocyanine Green-labeled Polymeric Micelles ONM-100", - "Photodynamic Compound TLD-1433", - "Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05", - "Alisertib", - "Protein Kinase C Inhibitor IDE196", - "Smoothened Antagonist LEQ506", - "Anti-gremlin-1 Monoclonal Antibody UCB6114", - "Vesigenurtucel-L", - "HAAH Lambda phage Vaccine SNS-301", - "Roducitabine", - "Oral Pancreatic Cancer Vaccine V3-P", - "Baricitinib", - "Quarfloxin", - "Testolactone", - "Oxeclosporin", - "Flumatinib", - "P-TEFb Inhibitor BAY1143572", - "Mivebresib", - "Hydroxychloroquine", - "Anti-c-fms Monoclonal Antibody AMG 820", - "Dulanermin", - "Transdermal 17beta-Estradiol Gel BHR-200", - "Anastrozole", - "Retaspimycin Hydrochloride", - "Vascular Disrupting Agent BNC105", - "Anti-CD3/CD20 Bispecific Antibody GEN3013", - "Anti-HER2 ADC DS-8201a", - "RET Inhibitor DS-5010", - "Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2", - "MAGE-A3 Multipeptide Vaccine GL-0817", - "Immunocytokine NHS-IL2-LT", - "Anti-LIF Monoclonal Antibody MSC-1", - "Anti-CTLA-4 Monoclonal Antibody AGEN1181", - "Ofranergene Obadenovec", - "Topoisomerase-1 Inhibitor LMP744", - "Tubulin Polymerization Inhibitor CKD-516", - "Anti-DLL3/CD3 BiTE Antibody AMG 757", - "Y 90 Monoclonal Antibody HMFG1", - "Anthramycin", - "Selective Estrogen Receptor Degrader SRN-927", - "Anti-CA19-9 Monoclonal Antibody 5B1", - "Triciribine Phosphate", - "Anti-HER2 Bi-specific Monoclonal Antibody ZW25", - "Azimexon", - "SERD SHR9549", - "Enclomiphene", - "Breflate", - "Tasquinimod", - "Selumetinib Sulfate", - "Tocotrienol", - "Oxaliplatin Eluting Beads", - "HPV16E7-specificHLA-A*02", - "Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201", - "Rhizoxin", - "Verpasep Caltespen", - "Methylprednisolone", - "Custirsen Sodium", - "Synthetic Long E6/E7 Peptides Vaccine HPV-01", - "Anti-HER2-DM1 ADC B003", - "Ecromeximab", - "Alpha V Beta 1 Inhibitor ATN-161", - "EZH1/2 Inhibitor HH2853", - "Mogamulizumab", - "Compound Kushen Injection", - "Orelabrutinib", - "PI3K Inhibitor WX-037", - "Polyandrol", - "Adenosine A2B Receptor Antagonist PBF-1129", - "Recombinant Interferon Alfa", - "Anti-NRP1 Antibody ASP1948", - "Camsirubicin", - "Temoporfin", - "CCR2 Antagonist CCX872-B", - "TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells", - "Aurora A Kinase Inhibitor LY3295668", - "Galectin-1 Inhibitor OTX008", - "Lucanthone", - "Ontorpacept", - "BTK Inhibitor DTRMWXHS-12", - "Liposomal Daunorubicin Citrate", - "Autologous CD19/PD-1 Bispecific CAR-T Cells", - "Anti-ILT4 Monoclonal Antibody MK-4830", - "SN-38-Loaded Polymeric Micelles NK012", - "Pomegranate Juice", - "Shark Cartilage Extract AE-941", - "Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102", - "Hydroxyprogesterone Caproate", - "Zebularine", - "Valproic Acid", - "Lutetium Lu 177 Monoclonal Antibody CC49", - "Anti-CD123 ADC IMGN632", - "Anti-LAG-3 Monoclonal Antibody INCAGN02385", - "Bruceanol B", - "Gemcitabine Hydrochloride Emulsion", - "Razoxane", - "TGF-beta Receptor 1 Kinase Inhibitor YL-13027", - "Anti-CD47 Monoclonal Antibody SRF231", - "Buparlisib", - "eIF4E Antisense Oligonucleotide ISIS 183750", - "Monoclonal Antibody R24", - "BP-Cx1-Platinum Complex BP-C1", - "PSMA/CD3 Tri-specific T-cell Activating Construct HPN424", - "Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962", - "Endothelin Receptor Type A Antagonist YM598", - "NEDD8 Activating Enzyme E1 Inhibitor TAS4464", - "Motesanib Diphosphate", - "Pirotinib", - "Tergenpumatucel-L", - "IL-10 Immunomodulator MK-1966", - "Anti-CD20 Monoclonal Antibody PRO131921", - "Tabalumab", - "Sitimagene Ceradenovec", - "Bortezomib", - "Light-Emitting Oncolytic Vaccinia Virus GL-ONC1", - "Ethylnitrosourea", - "Multi-AGC Kinase Inhibitor AT13148", - "RFT5-dgA Immunotoxin IMTOX25", - "Niclosamide", - "Bempegaldesleukin", - "Pentamustine", - "Lapuleucel-T", - "Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414", - "Larotinib Mesylate", - "Teglarinad Chloride", - "CD20-CD19 Compound CAR T Cells", - "Natural IFN-alpha OPC-18", - "Anti-CD123/CD3 Bispecific Antibody JNJ-63709178", - "Filanesib", - "PD-L1/PD-L2/VISTA Antagonist CA-170", - "CDK7 Inhibitor CT7001", - "Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621", - "Puquitinib Mesylate", - "Anti-CD19/CD22 CAR NK Cells", - "Inodiftagene Vixteplasmid", - "Manelimab", - "PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170", - "Anti-AGS-16 Monoclonal Antibody AGS-16M18", - "Linoleyl Carbonate-Paclitaxel", - "Imipramine Blue", - "Talactoferrin Alfa", - "Lutetium Lu 177 Dotatate", - "Antitumor B Key Active Component-alpha", - "Iodine I 131 Rituximab", - "Resiquimod", - "AXL Inhibitor DS-1205c", - "Tetraphenyl Chlorin Disulfonate", - "Galunisertib", - "OX40L-expressing Oncolytic Adenovirus DNX-2440", - "Nanosomal Docetaxel Lipid Suspension", - "Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C", - "Avdoralimab", - "BRAF Inhibitor", - "Smoothened Antagonist TAK-441", - "Sulfatinib", - "Tributyrin", - "Anti-TIGIT Monoclonal Antibody BMS-986207", - "Anti-VEGFR3 Monoclonal Antibody IMC-3C5", - "Bruceanol H", - "CXCR4 Peptide Antagonist LY2510924", - "Cytochlor", - "Fluorouracil", - "Liothyronine Sodium", - "JAK1 Inhibitor INCB052793", - "Mavelertinib", - "Gentuximab", - "Synthetic Plumbagin PCUR-101", - "Rucaparib Phosphate", - "2-Methoxyestrone", - "Lexibulin", - "Iodine I 131 TM-601", - "Quinacrine Hydrochloride", - "Margetuximab", - "Iodine I 125-Anti-EGFR-425 Monoclonal Antibody", - "Antroquinonol Capsule", - "Dexanabinol", - "Etoposide", - "Pipobroman", - "CHK1 Inhibitor MK-8776", - "Anti-EGFR Monoclonal Antibody SYN004", - "Attenuated Measles Virus Encoding SCD Transgene TMV-018", - "Retelliptine", - "Anti-GCC Antibody-Drug Conjugate TAK-164", - "CD73 Inhibitor LY3475070", - "Hexaminolevulinate", - "Immunoconjugate RO5479599", - "Necitumumab", - "Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547", - "Anti-PD-1 Monoclonal Antibody CS1003", - "Arabinoxylan Compound MGN3", - "Serplulimab", - "SMO Protein Inhibitor ZSP1602", - "Anti-LAG-3/PD-L1 Bispecific Antibody FS118", - "Clinical Trial", - "Brontictuzumab", - "Niraparib Tosylate Monohydrate", - "Asciminib", - "Banoxantrone", - "Anti-B7-H3 Antibody DS-5573a", - "Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006", - "Iodine I 131 Monoclonal Antibody 81C6", - "Oral Picoplatin", - "Pilaralisib", - "Rilimogene Glafolivec", - "Anti-BTN3A Agonistic Monoclonal Antibody ICT01", - "Tepoditamab", - "Folitixorin", - "Sulindac", - "Tocladesine", - "ATR Kinase Inhibitor VX-803", - "TRK Inhibitor AZD6918", - "Delolimogene Mupadenorepvec", - "Maytansine", - "Acetylcysteine", - "Muparfostat", - "pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2", - "GS/pan-Notch Inhibitor BMS-986115", - "Mutant-selective EGFR Inhibitor PF-06459988", - "Diarylsulfonylurea Compound ILX-295501", - "Talotrexin Ammonium", - "Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514", - "Bosutinib", - "Pixatimod", - "Anti-EGFR/CD16A Bispecific Antibody AFM24", - "Sam68 Modulator CWP232291", - "Sunitinib Malate", - "Angiogenesis Inhibitor JI-101", - "Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47", - "Natural Killer Cells ZRx101", - "Onalespib Lactate", - "Elpamotide", - "Ifetroban", - "Idasanutlin", - "Trastuzumab Conjugate BI-CON-02", - "Anti-TWEAK Monoclonal Antibody RG7212", - "Pan-RAR Agonist/AP-1 Inhibitor LGD 1550", - "Pemetrexed Disodium", - "Puromycin Hydrochloride", - "Carotuximab", - "Anti-RANKL Monoclonal Antibody GB-223", - "Batabulin Sodium", - "Docetaxel-loaded Nanopharmaceutical CRLX301", - "Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702", - "Asparaginase", - "Z-Endoxifen Hydrochloride", - "Anti-CD40 Agonist Monoclonal Antibody CDX-1140", - "Yiqi-yangyin-jiedu Herbal Decoction", - "Zanolimumab", - "Antineoplastic Vaccine GV-1301", - "EED Inhibitor MAK683", - "Cositecan", - "Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208", - "Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1", - "AutologousHPV16E7-specificHLA-A*02", - "Carboxyphenyl Retinamide", - "HM2/MMAE Antibody-Drug Conjugate ALT-P7", - "Tetrahydrouridine", - "Lead Pb 212 TCMC-trastuzumab", - "Anti-PD-1 Monoclonal Antibody HX008", - "Salmonella VNP20009", - "ISS 1018 CpG Oligodeoxynucleotide", - "iNOS Dimerization Inhibitor ASP9853", - "Deferoxamine Mesylate", - "I 131 Monoclonal Antibody F19", - "Merestinib", - "Padoporfin", - "Antibody-drug Conjugate ADC XMT-1536", - "ALK Inhibitor TAE684", - "Anti-CD37 Antibody-Drug Conjugate IMGN529", - "Anti-PD-1 Monoclonal Antibody LZM009", - "Clodronic Acid", - "Monoclonal Antibody Hu3S193", - "Nucleolin Antagonist IPP-204106N", - "PI3K Inhibitor ZSTK474", - "Rice Bran", - "STAT3 Inhibitor TTI-101", - "Monoclonal Antibody HeFi-1", - "Autologous CD123-4SCAR-expressing T-cells 4SCAR123", - "Oncolytic HSV-1 NV1020", - "Dezaguanine", - "Navitoclax", - "Derazantinib", - "Pegylated Liposomal Mitoxantrone Hydrochloride", - "PI3K-delta Inhibitor HMPL 689", - "G-Quadruplex Stabilizer BMVC", - "Recombinant Fractalkine", - "Balstilimab", - "Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A", - "SuperagonistInterleukin-15", - "Lutetium Lu 177 DOTA-Tetulomab", - "Anti-CD166 Probody-drug Conjugate CX-2009", - "Olvimulogene Nanivacirepvec", - "Ipomeanol", - "Vesencumab", - "EGb761", - "Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101", - "P-p68 Inhibitor RX-5902", - "Caracemide", - "Demecolcine", - "Ruthenium-based Small Molecule Therapeutic BOLD-100", - "Anti-PD-1 Monoclonal Antibody AMG 404", - "Autologous Nectin-4/FAP-targeted CAR-T Cells", - "Androstane Steroid HE3235", - "Icrucumab", - "Cyclophosphamide", - "Anti-GARP Monoclonal Antibody ABBV-151", - "Inositol", - "Tanibirumab", - "Selonsertib", - "Synthetic hTERT DNA Vaccine INO-1401", - "Theliatinib", - "Anti-EGFR Monoclonal Antibody Mixture MM-151", - "Brigatinib", - "Camidanlumab Tesirine", - "SHP-1 Agonist SC-43", - "Thymopentin", - "Istiratumab", - "Ulinastatin", - "Apoptosis Inducer MPC-2130", - "Cytarabine Monophosphate Prodrug MB07133", - "Estrogens; Conjugated", - "ERa36 Modulator Icaritin", - "Sonepcizumab", - "C-myb Antisense Oligonucleotide G4460", - "Calculus bovis/Moschus/Olibanum/Myrrha Capsule", - "Coenzyme Q10", - "Hsp90 Inhibitor DS-2248", - "TLR7 Agonist LHC165", - "Marcellomycin", - "Mitoxantrone Hydrochloride", - "Recombinant Human Apolipoprotein(a) Kringle V MG1102", - "Namodenoson", - "Trametinib", - "Panobinostat", - "Anti-KSP/Anti-VEGF siRNAs ALN-VSP02", - "Not Reported", - "Talabostat Mesylate", - "Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001", - "Talampanel", - "5-Fluoro-2-Deoxycytidine", - "Dengue Virus Adjuvant PV-001-DV", - "Anti-HA Epitope Monoclonal Antibody MEDI8852", - "Erlotinib", - "Quinine", - "EGFR Mutant-specific Inhibitor BPI-7711", - "Gutolactone", - "Heparin Derivative SST0001", - "SERD ZN-c5", - "Taxane Analogue TPI 287", - "CYP17/Androgen Receptor Inhibitor ODM 204", - "Iodine I 131 Tositumomab", - "Methotrexate-E Therapeutic Implant", - "Demcizumab", - "Lutetium Lu 177-DTPA-omburtamab", - "Idarubicin Hydrochloride", - "Cyclosporine", - "Galarubicin", - "Methylcantharidimide", - "Cabozantinib", - "Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01", - "Ganitumab", - "Leuprolide", - "Glaucarubolone", - "Vinorelbine", - "GSK-3 Inhibitor 9-ING-41", - "Autologous Anti-FLT3 CAR T Cells AMG 553", - "Interleukin-15 Fusion Protein BJ-001", - "Triazinate", - "mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902", - "Trimetrexate", - "Ixazomib", - "Recombinant Interferon Alfa-2b", - "Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302", - "PI3K-beta Inhibitor GSK2636771", - "Vatalanib Succinate", - "Cytarabine-asparagine Prodrug BST-236", - "ERK 1/2 Inhibitor ASTX029", - "LSD1 Inhibitor SYHA1807", - "Carmustine", - "Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo", - "Pimurutamab", - "Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323", - "Epirubicin", - "Afimoxifene", - "HDAC Inhibitor CKD-581", - "Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105", - "Lometrexol Sodium", - "Mitazalimab", - "Triazene Derivative TriN2755", - "Anti-CD47 Monoclonal Antibody IBI188", - "Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968", - "Pamiparib", - "Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T", - "EGFR Inhibitor AZD3759", - "Nanoparticle-encapsulated Doxorubicin Hydrochloride", - "Pelabresib", - "Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046", - "Erdafitinib", - "Anti-TGF-beta Monoclonal Antibody SAR-439459", - "Osimertinib", - "Pazopanib Hydrochloride", - "FLT3/KIT/CSF1R Inhibitor NMS-03592088", - "PEOX-based Polymer Encapsulated Paclitaxel FID-007", - "Vecabrutinib", - "Abexinostat", - "Ibandronate Sodium", - "Trigriluzole", - "Edodekin alfa", - "Anti-LAG3 Monoclonal Antibody BI 754111", - "FGFR Inhibitor CPL304110", - "Pan-RAF Inhibitor LY3009120", - "Annonaceous Acetogenins", - "Recombinant Human Papillomavirus Bivalent Vaccine", - "CTLA-4-directed Probody BMS-986249", - "p53-HDM2 Protein-protein Interaction Inhibitor APG-115", - "iNKT Cell Agonist ABX196", - "Vorsetzumab Mafodotin", - "Rucaparib", - "Yttrium Y 90 Colloid", - "Imifoplatin", - "Iloprost", - "Carbogen", - "Siltuximab", - "Giredestrant", - "Monoclonal Antibody CC49-delta CH2", - "Inalimarev", - "Mavorixafor", - "pan-RAF Inhibitor LXH254", - "Cordycepin Triphosphate", - "Esorubicin", - "Antibody-drug Conjugate ABBV-838", - "Fenretinide Lipid Matrix", - "Broccoli Sprout/Broccoli Seed Extract Supplement", - "Ladiratuzumab Vedotin", - "LMP7 Inhibitor M3258", - "Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01", - "PI3K Inhibitor BGT226", - "Echinomycin", - "Polidocanol", - "Resiquimod Topical Gel", - "IAP Inhibitor HGS1029", - "Atiprimod Dimaleate", - "Trimelamol", - "PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate", - "Anti-CD137 Agonistic Monoclonal Antibody ADG106", - "Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG", - "Transferrin-CRM107", - "Diazepinomicin", - "Placebo", - "Yttrium Y 90 Monoclonal Antibody MN-14", - "Varlitinib", - "Recombinant Super-compound Interferon", - "PGG Beta-Glucan", - "iPSC-derived Natural Killer Cells FT500", - "MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells", - "Tacedinaline", - "STAT3 Inhibitor DSP-0337", - "PARP 1/2 Inhibitor IMP4297", - "Spherical Nucleic Acid Nanoparticle NU-0129", - "IL4-Pseudomonas Exotoxin Fusion Protein MDNA55", - "Panobinostat Nanoparticle Formulation MTX110", - "Daunorubicin Citrate", - "FLT3/FGFR Dual Kinase Inhibitor MAX-40279", - "MEK/Aurora Kinase Inhibitor BI 847325", - "CDK4/6 Inhibitor G1T38", - "AXL Inhibitor SLC-391", - "Glutaminase Inhibitor CB-839", - "Algenpantucel-L", - "Methyltestosterone", - "PI3K/mTOR Kinase Inhibitor VS-5584", - "Akt Inhibitor MK2206", - "Anti-c-Met Monoclonal Antibody ARGX-111", - "Polyunsaturated Fatty Acid", - "Prednisone", - "Anti-CD22 ADC TRPH-222", - "Caffeic Acid Phenethyl Ester", - "Topical Betulinic Acid", - "VEGFR/FGFR Inhibitor ODM-203", - "Poly-gamma Glutamic Acid", - "Piposulfan", - "Tositumomab", - "Tamibarotene", - "Tyrosine Kinase Inhibitor", - "Kanitinib", - "Radiolabeled CC49", - "Edatrexate", - "Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A", - "Ivuxolimab", - "Anti-CD37 Monoclonal Antibody BI 836826", - "Micro Needle Array-Doxorubicin", - "Aranose", - "KRAS G12C Inhibitor LY3499446", - "PI3K-delta Inhibitor PWT143", - "IDO1 Inhibitor MK-7162", - "Bleomycin B2", - "Recombinant Interferon", - "Resistant Starch", - "Fadraciclib", - "Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024", - "Individualized MVA-based Vaccine TG4050", - "Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017", - "Etarotene", - "Ombrabulin", - "Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate", - "EGFR/EGFRvIII Inhibitor WSD0922-FU", - "Etoglucid", - "Arcitumomab", - "Ripretinib", - "Autologous Clonal Neoantigen T Cells ATL001", - "Vinflunine Ditartrate", - "Brequinar Sodium", - "Trabectedin", - "Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307", - "Fianlimab", - "Trastuzumab", - "Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1", - "Alpha Galactosylceramide", - "Doxifluridine", - "Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711", - "Denosumab", - "Urelumab", - "Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100", - "Anti-TIM-3 Monoclonal Antibody TSR-022", - "Sulofenur", - "BTK Inhibitor M7583", - "TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200", - "Vinflunine", - "Pyruvate Kinase M2 Isoform Activator TP-1454", - "Anti-GD2 Monoclonal Antibody hu14.18K322A", - "Anti-GD2 Monoclonal Antibody MORAb-028", - "Multi-kinase Inhibitor XL092", - "PI3K Inhibitor GSK1059615", - "TLR Agonist CADI-05", - "Carboplatin", - "Recombinant Interferon Alfa-1b", - "Vismodegib", - "Coxsackievirus V937", - "Exisulind", - "Citarinostat", - "Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine", - "Anti-GCC Antibody-Drug Conjugate MLN0264", - "Idelalisib", - "Annamycin", - "Anti-FGFR2 Antibody BAY1179470", - "Protein Stabilized Liposomal Docetaxel Nanoparticles", - "Human MOAB LICO 28a32", - "Tubulin Binding Agent TTI-237", - "Sotrastaurin Acetate", - "Triplatin Tetranitrate", - "Porcupine Inhibitor CGX1321", - "Holmium Ho 166 Poly(L-Lactic Acid) Microspheres", - "Ranolazine", - "Fluvastatin", - "Halichondrin B", - "Linifanib", - "Anti-CD3/CD7-Ricin Toxin A Immunotoxin", - "Ganglioside GD2", - "Anti-CD73 Monoclonal Antibody TJ4309", - "OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule", - "Spiromustine", - "Erastin Analogue PRLX 93936", - "Anti-Globo H Monoclonal Antibody OBI-888", - "Anti-CD47 ADC SGN-CD47M", - "Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A", - "Vosaroxin", - "Antibody-drug Conjugate SC-002", - "Pseudoisocytidine", - "Cergutuzumab Amunaleukin", - "Captopril", - "Axl/Mer Inhibitor PF-07265807", - "Anti-CD30/CD16A Monoclonal Antibody AFM13", - "Etoposide Toniribate", - "p97 Inhibitor CB-5083", - "Pexidartinib", - "PIM/FLT3 Kinase Inhibitor SEL24", - "CCR2/CCR5 Antagonist BMS-813160", - "Plasmid DNA Vaccine pING-hHER3FL", - "Tipiracil Hydrochloride", - "Tarenflurbil", - "Iodine I 131 Derlotuximab Biotin", - "CYP17/CYP11B2 Inhibitor LAE001", - "Nifurtimox", - "Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01", - "Triptorelin Pamoate", - "Pralatrexate", - "Epratuzumab-cys-tesirine", - "Anti-CLDN6 Monoclonal Antibody ASP1650", - "Xiliertinib", - "Trastuzumab Monomethyl Auristatin F", - "Androgen Receptor Antisense Oligonucleotide AZD5312", - "Tranylcypromine Sulfate", - "HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201", - "Alvocidib Hydrochloride", - "Docetaxel", - "Denileukin Diftitox", - "ERK Inhibitor LTT462", - "Nogapendekin Alfa", - "Serdemetan", - "Hsp90-targeted Photosensitizer HS-201", - "Anti-PGF Monoclonal Antibody RO5323441", - "Ieramilimab", - "SIRPa-Fc-CD40L Fusion Protein SL-172154", - "EGFR/HER1/HER2 Inhibitor PKI166", - "Midostaurin", - "Zalifrelimab", - "HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131", - "Anti-TIGIT Monoclonal Antibody AB154", - "Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101", - "Deferoxamine", - "Duvortuxizumab", - "BCG Vaccine", - "Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029", - "Ginsenoside Rg3 Capsule", - "Anti-VEGF Anticalin PRS-050-PEG40", - "Epitinib Succinate", - "Boanmycin Hydrochloride", - "Adenoviral Brachyury Vaccine ETBX-051", - "Xeloda", - "Porcupine Inhibitor XNW7201", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125", - "Picrasinoside H", - "DPX-E7 HPV Vaccine", - "CDK4/6 Inhibitor HS-10342", - "Liposomal Rhenium Re 186", - "mRNA-based Personalized Cancer Vaccine mRNA-4157", - "CSF-1R Inhibitor BLZ945", - "FGFR4 Inhibitor FGF401", - "Indoximod Prodrug NLG802", - "DACH Polymer Platinate AP5346", - "Neoantigen-based Therapeutic Cancer Vaccine GRT-R904", - "Epothilone Analog UTD1", - "Silicon Phthalocyanine 4", - "HDAC Inhibitor MPT0E028", - "Anti-IL-8 Monoclonal Antibody BMS-986253", - "c-Met Inhibitor HS-10241", - "Detirelix", - "Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1", - "Fruquintinib", - "Toremifene", - "Anti-VEGFR2 Monoclonal Antibody HLX06", - "other", - "Cevipabulin Fumarate", - "C-VISABikDD", - "AR Antagonist BMS-641988", - "L-Gossypol", - "Idarubicin-Eluting Beads", - "Interleukin Therapy", - "Naphthalimide Analogue UNBS5162", - "Pegvisomant", - "Allogeneic Renal Cell Carcinoma Vaccine MGN1601", - "EGFR/HER2 Kinase Inhibitor TAK-285", - "Elacestrant", - "Nortopixantrone", - "SSTR2-targeting Protein/DM1 Conjugate PEN-221", - "PIM Kinase Inhibitor LGH447", - "CYL-02 Plasmid DNA", - "Vincristine Sulfate", - "Ingenol Mebutate", - "Lorukafusp alfa", - "Parsaclisib Hydrochloride", - "Gamma-Secretase Inhibitor LY3039478", - "Oncolytic Herpes Simplex Virus-1 ONCR-177", - "siG12D LODER", - "Thorium Th 227 Anetumab", - "Anti-GITR Agonistic Monoclonal Antibody BMS-986156", - "Ispinesib", - "Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10", - "Adenoviral MUC1 Vaccine ETBX-061", - "Anti-FGFR3 Antibody-drug Conjugate LY3076226", - "Bendamustine", - "Dasatinib", - "Anti-CD73 Monoclonal Antibody CPI-006", - "Tubulin Polymerization Inhibitor VERU-111", - "Immunotherapeutic GSK1572932A", - "MDM2 Inhibitor AMGMDS3", - "Pegvorhyaluronidase Alfa", - "Anti-CTLA-4 Monoclonal Antibody ADG116", - "Anti-DKK-1 Monoclonal Antibody LY2812176", - "Anti-PD-1 Monoclonal Antibody AK105", - "BMS-214662", - "Hu14.18-IL2 Fusion Protein EMD 273063", - "Deuterated Enzalutamide", - "Nitroglycerin Transdermal Patch", - "Narnatumab", - "Hyaluronidase-zzxf/Pertuzumab/Trastuzumab", - "Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine", - "Evofosfamide", - "Tavolimab", - "Medorubicin", - "Henatinib Maleate", - "Monoclonal Antibody 11D10", - "Eftilagimod Alpha", - "Azurin", - "EP4 Antagonist ONO-4578", - "DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457", - "BET Inhibitor GSK2820151", - "Cord Blood Derived CAR T-Cells", - "Prinomastat", - "Anti-TGF-beta Monoclonal Antibody NIS793", - "Sustained-release Mitomycin C Hydrogel Formulation UGN-102", - "Autologous CD19-targeted CAR-T Cells GC007F", - "Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A", - "Menin-MLL Interaction Inhibitor SNDX-5613", - "Anti-CD19/CD3 Tetravalent Antibody AFM11", - "Selicrelumab", - "Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01", - "Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110", - "Nemorubicin Hydrochloride", - "Pan-Mutant-IDH1 Inhibitor Bay-1436032", - "Folic Acid", - "Docetaxel Polymeric Micelles", - "Tiazofurin", - "EZH2 Inhibitor PF-06821497", - "Monoclonal Antibody Lym-1", - "Duborimycin", - "p38 MAPK Inhibitor LY3007113", - "Burosumab", - "Ormaplatin", - "Bromocriptine Mesylate", - "Cathelicidin LL-37", - "PI3Ka/mTOR Inhibitor PKI-179", - "Verubulin Hydrochloride", - "Actinium Ac 225 Lintuzumab", - "Foslinanib", - "MAGE-A3-specific Immunotherapeutic GSK 2132231A", - "PI3K Inhibitor GDC0077", - "c-Met Inhibitor AL2846", - "Hsp90 Inhibitor AB-010", - "Talaporfin Sodium", - "Darinaparsin", - "Emitefur", - "IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000", - "Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2", - "Nanoparticle Albumin-Bound Docetaxel", - "Antrodia cinnamomea Supplement", - "Fursultiamine", - "Bispecific Antibody GS-1423", - "Exatecan Mesylate", - "HIF2a RNAi ARO-HIF2", - "Indomethacin", - "Anti-MMP-9 Monoclonal Antibody GS-5745", - "Pioglitazone", - "Toripalimab", - "TP40 Immunotoxin", - "Tivantinib", - "ALK-2 Inhibitor TP-0184", - "Wnt Signaling Pathway Inhibitor SM08502", - "Mivobulin Isethionate", - "ATR Inhibitor RP-3500", - "FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999", - "Anti-PSMA Monoclonal Antibody-MMAE Conjugate", - "Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19", - "Bavituximab", - "Soy Protein Isolate", - "Trastuzumab Duocarmazine", - "2-Methoxyestradiol", - "Recombinant Anti-WT1 Immunotherapeutic GSK2302024A", - "Aurora Kinase/VEGFR2 Inhibitor CYC116", - "Sodium Metaarsenite", - "Pegylated Liposomal Irinotecan", - "Androgen Antagonist APC-100", - "Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005", - "RAF Kinase Inhibitor L-779450", - "Savolitinib", - "Dabrafenib", - "Amivantamab", - "5-Aza-4'-thio-2'-deoxycytidine", - "Immunotherapy Regimen MKC-1106-MT", - "Rocakinogene Sifuplasmid", - "Seocalcitol", - "Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142", - "FGFR2 Inhibitor RLY-4008", - "Carmustine in Ethanol", - "Adenosine A2A/A2B Receptor Antagonist AB928", - "CSF1R Inhibitor PLX73086", - "Fisogatinib", - "Ruthenium Ru-106", - "Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE", - "Enadenotucirev", - "Long-acting Release Pasireotide", - "STING Agonist GSK3745417", - "Tesidolumab", - "SHP2 Inhibitor RMC-4630", - "CL 246738", - "WT1 Peptide Vaccine OCV-501", - "Beta-elemene", - "Pyruvate Kinase Inhibitor TLN-232", - "Eltanexor", - "Resveratrol Formulation SRT501", - "Mycobacterium tuberculosis Arabinomannan Z-100", - "Virulizin", - "Carbetimer", - "Ancitabine", - "Halofuginone Hydrobromide", - "Cenisertib", - "Lupartumab Amadotin", - "Glumetinib", - "Piroxantrone Hydrochloride", - "PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701", - "TLR-Directed Cationic Lipid-DNA Complex JVRS-100", - "Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404", - "Triaziquone", - "Simlukafusp Alfa", - "Umbralisib", - "Vector-peptide Conjugated Paclitaxel", - "Bozitinib", - "Nutlin-3a", - "Commensal Bacterial Strain Formulation VE800", - "Immunocytokine NHS-IL12", - "Tyrosinase", - "Anti-5T4 Antibody-drug Conjugate SYD1875", - "Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01", - "Azacitidine", - "BET inhibitor BI 894999", - "Rivoceranib Mesylate", - "EZH2 inhibitor CPI-0209", - "Protein Arginine Methyltransferase 5 Inhibitor PF-06939999", - "CEA-MUC-1-TRICOM Vaccine CV301", - "Methionine Aminopeptidase 2 Inhibitor PPI-2458", - "Colchicine-Site Binding Agent ABT-751", - "Methylselenocysteine", - "Anti-HER2-DM1 Antibody-drug Conjugate GQ1001", - "Lirilumab", - "Extended Release Flucytosine", - "Oligo-fucoidan", - "Phosphoramide Mustard", - "Streptozocin", - "Allogeneic Anti-CD20-CAR T-cells PBCAR20A", - "Bruceanol A", - "Hsp90 Inhibitor MPC-3100", - "Tetanus Toxoid Vaccine", - "Bivalent BRD4 Inhibitor AZD5153", - "Darleukin", - "DHA-Paclitaxel", - "Tasidotin", - "Y 90 Monoclonal Antibody CC49", - "Noscapine Hydrochloride", - "DNA Plasmid Encoding Interleukin-12 INO-9012", - "Birabresib", - "Chlorozotocin", - "Pentoxifylline", - "Anti-myostatin Monoclonal Antibody LY2495655", - "BMS-275183", - "Toll-like Receptor 7 Agonist DSP-0509", - "Carbendazim", - "Flumatinib Mesylate", - "Palbociclib", - "Tagraxofusp-erzs", - "Bispecific Antibody 2B1", - "Monoclonal Antibody 4B5 Anti-Idiotype Vaccine", - "Crizotinib", - "Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108", - "Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321", - "Morpholinodoxorubicin", - "Procaspase Activating Compound-1 VO-100", - "WT1 Protein-derived Peptide Vaccine DSP-7888", - "Macrocycle-bridged STING Agonist E7766", - "Prostaglandin E2 EP4 Receptor Inhibitor AN0025", - "Anti-BCMA Antibody-drug Conjugate AMG 224", - "Testosterone Enanthate", - "Anthrapyrazole", - "PRMT5 Inhibitor JNJ-64619178", - "Cyproterone", - "Anti-VEGFR2 Monoclonal Antibody MSB0254", - "Vintafolide", - "Amblyomin-X", - "Ionomycin", - "Altretamine", - "Anti-AXL Fusion Protein AVB-S6-500", - "Anti-PD-L1 Monoclonal Antibody BCD-135", - "Class 1/4 Histone Deacetylase Inhibitor OKI-179", - "Donafenib", - "Vandetanib-eluting Radiopaque Bead BTG-002814", - "Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015", - "Anti-CD25 Monoclonal Antibody RO7296682", - "Pibrozelesin", - "Ezabenlimab", - "Cinobufagin", - "Ruxotemitide", - "Anti-A5B1 Integrin Monoclonal Antibody PF-04605412", - "STING Agonist BMS-986301", - "Interferon Alfa-N3", - "Human Papillomavirus 16 E7 Peptide/Padre 965.10", - "CHP-NY-ESO-1 Peptide Vaccine IMF-001", - "Recombinant Leukocyte Interleukin", - "Allovectin-7", - "Penicillamine", - "Multi-kinase Inhibitor TPX-0022", - "Arsenic Trioxide", - "Adenoviral PSA Vaccine ETBX-071", - "Aderbasib", - "HDAC Inhibitor CXD101", - "Penberol", - "Synchrovax SEM Plasmid DNA Vaccine", - "Camptothecin Analogue TLC388", - "Sodium Salicylate", - "Anti-IL-13 Humanized Monoclonal Antibody TNX-650", - "Nedisertib", - "Ribociclib", - "MEK Inhibitor PD0325901", - "Actinium Ac 225-FPI-1434", - "Prostate Health Cocktail Dietary Supplement", - "Protease-activated Anti-PD-L1 Antibody Prodrug CX-072", - "Chaparrin", - "Batimastat", - "Liposomal Docetaxel", - "Anti-PSMA/PBD ADC MEDI3726", - "Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells", - "Tafasitamab", - "Amatuximab", - "Bisantrene Hydrochloride", - "BRAF Inhibitor BGB-3245", - "Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020", - "Cinobufotalin", - "Ramucirumab", - "Bcl-2 Inhibitor S65487", - "Oraxol", - "Canfosfamide", - "Recombinant MIP1-alpha Variant ECI301", - "Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907", - "Iodine I 131 Monoclonal Antibody F16SIP", - "Oral Fludarabine Phosphate", - "Cetuximab", - "Pegylated Interferon Alfa", - "c-Met Inhibitor ABN401", - "Neoantigen-based Therapeutic Cancer Vaccine GRT-C903", - "Nintedanib", - "Sustained-release Mitomycin C Hydrogel Formulation UGN-101", - "2'-F-ara-deoxyuridine", - "Ozarelix", - "mTOR Kinase Inhibitor AZD8055", - "Antibody-drug Conjugate SC-006", - "Picropodophyllin", - "Gemcitabine-Releasing Intravesical System", - "Broxuridine", - "Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591", - "Antiangiogenic Drug Combination TL-118", - "CDK2/5/9 Inhibitor CYC065", - "Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100", - "Anti-CD40L Fc-Fusion Protein BMS-986004", - "Deuteporfin", - "Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809", - "Oral Cancer Vaccine V3-OVA", - "Ethinyl Estradiol", - "Flt3/MerTK Inhibitor MRX-2843", - "Anti-BCMA Antibody SEA-BCMA", - "Atuveciclib", - "Methionine Aminopeptidase 2 Inhibitor M8891", - "Nanatinostat", - "Rhenium Re-188 Etidronate", - "Uproleselan", - "Vinblastine Sulfate", - "Recombinant Human 6Ckine", - "Anti-BCMA Antibody-drug Conjugate GSK2857916", - "ATM Kinase Inhibitor AZD0156", - "Camptothecin-20(S)-O-Propionate Hydrate", - "Liposomal Irinotecan", - "Octreotide", - "Utomilumab", - "Ametantrone", - "Nanafrocin", - "Topsalysin", - "Sacituzumab Govitecan", - "CDC7 Kinase Inhibitor LY3143921 Hydrate", - "Cinacalcet Hydrochloride", - "Navoximod", - "PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901", - "DM-CHOC-PEN", - "Uroacitides", - "c-Met Inhibitor MK8033", - "ALK/c-Met Inhibitor TQ-B3139", - "Cobomarsen", - "Danvatirsen", - "Anti-CD19 Monoclonal Antibody DI-B4", - "Aerosol Gemcitabine", - "Cortisone Acetate", - "Fotemustine", - "HPV6/11-targeted DNA Plasmid Vaccine INO-3107", - "Anti-HER2 Antibody-drug Conjugate BAT8001", - "Anti-CD70 Monoclonal Antibody MDX-1411", - "Tegafur-Uracil", - "Recombinant Interleukin-13", - "PI3K-alpha Inhibitor MEN1611", - "FGF Receptor Antagonist HGS1036", - "Ciforadenant", - "pan-PI3K Inhibitor CLR457", - "Pinometostat", - "Belapectin", - "2-Hydroxyflutamide Depot", - "iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596", - "Goserelin Acetate", - "Anti-HGF Monoclonal Antibody TAK-701", - "Autologous Deep IL-15 Primed T-cells TRQ15-01", - "Larotrectinib Sulfate", - "p97 Inhibitor CB-5339", - "Irinotecan", - "Trientine Hydrochloride", - "Wee1 Inhibitor ZN-c3", - "KSP Inhibitor AZD4877", - "Enavatuzumab", - "Cediranib Maleate", - "Morinda Citrifolia Fruit Extract", - "Patidegib Topical Gel", - "Bis(choline)tetrathiomolybdate", - "ROBO1-targeted BiCAR-NKT Cells", - "Spirogermanium", - "Tiragolumab", - "VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220", - "Monoclonal Antibody huJ591", - "Opolimogene Capmilisbac", - "BET Inhibitor BAY1238097", - "Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101", - "Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118", - "Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002", - "Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172", - "Bizalimogene Ralaplasmid", - "c-Kit Inhibitor PLX9486", - "Monoclonal Microbial EDP1503", - "Oral Hsp90 Inhibitor IPI-493", - "Paclitaxel Polymeric Micelle Formulation NANT-008", - "Perifosine", - "Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19", - "Yttrium Y 90 Daclizumab", - "CDK2 Inhibitor PF-07104091", - "Elesclomol Sodium", - "Anti-Ep-CAM Monoclonal Antibody ING-1", - "Mitoguazone", - "Onvansertib", - "Mechlorethamine Hydrochloride", - "Receptor Tyrosine Kinase Inhibitor R1530", - "Antibody-drug Conjugate MEDI7247", - "PI3K Inhibitor ACP-319", - "Anti-VEGFC Monoclonal Antibody VGX-100", - "Anti-KIR Monoclonal Antibody IPH 2101", - "FGFR Inhibitor AZD4547", - "Monoclonal Antibody m170", - "Aziridinylbenzoquinone RH1", - "Oxidative Phosphorylation Inhibitor IACS-010759", - "Personalized Neoepitope Yeast Vaccine YE-NEO-001", - "SIRPa-Fc Fusion Protein TTI-621", - "Vaccine-Sensitized Draining Lymph Node Cells", - "Allogeneic Natural Killer Cell Line NK-92", - "Bisnafide Dimesylate", - "Elisidepsin", - "Fluorodopan", - "PARP/Tankyrase Inhibitor 2X-121", - "Simeprevir", - "DNA Vaccine VB10.16", - "Saracatinib", - "Tiomolibdate Choline", - "Motexafin Lutetium", - "Chaparrinone", - "Liposomal MUC1/PET-lipid A Vaccine ONT-10", - "Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062", - "HIF-2alpha Inhibitor PT2385", - "Anti-PD-1 Monoclonal Antibody TSR-042", - "Etalocib", - "Nanoscale Coordination Polymer Nanoparticles CPI-100", - "Glufosfamide", - "Nanoparticle Albumin-Bound Rapamycin", - "Berubicin Hydrochloride", - "Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83", - "Orteronel", - "Palbociclib Isethionate", - "Masitinib Mesylate", - "CDK/JAK2/FLT3 Inhibitor TG02 Citrate", - "Cidan Herbal Capsule", - "Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633", - "CD123-CD33 Compound CAR T Cells", - "CDK8/19 Inhibitor SEL 120", - "Enfortumab Vedotin", - "Anti-CD40 Monoclonal Antibody Chi Lob 7/4", - "Pamidronate Disodium", - "VEGF/HGF-targeting DARPin MP0250", - "Thymidylate Synthase Inhibitor CX1106", - "Autologous TCR-engineered T-cells IMA202", - "Yttrium Y 90 Resin Microspheres", - "Checkpoint Kinase Inhibitor XL844", - "Fresolimumab", - "Olmutinib", - "Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201", - "Tipiracil", - "Doxorubicin Hydrochloride", - "Lucitanib", - "pan-PI3K/mTOR Inhibitor SF1126", - "Magnesium Valproate", - "Tanomastat", - "CK1alpha/CDK7/CDK9 Inhibitor BTX-A51", - "Anti-DLL4 Monoclonal Antibody MEDI0639", - "Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10", - "Elbasvir/Grazoprevir", - "Hormone Therapy", - "Tomato-Soy Juice", - "Anti-PD-1 Monoclonal Antibody F520", - "FGFR1/2/3 Inhibitor HMPL-453", - "Methoxyamine", - "EGFR Mutant-selective Inhibitor TQB3804", - "Anti-CD20 Monoclonal Antibody TL011", - "Milataxel", - "Androgen Receptor Antagonist TAS3681", - "Sivifene", - "Tocilizumab", - "Anti-HER-2 Bispecific Antibody KN026", - "Itacitinib Adipate", - "Dalotuzumab", - "Shu Yu Wan Formula", - "SLCT Inhibitor GNS561", - "Spanlecortemlocel", - "mRNA-based Personalized Cancer Vaccine NCI-4650", - "Lorlatinib", - "PI3Kalpha Inhibitor AZD8835", - "Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100", - "Motixafortide", - "Bardoxolone Methyl", - "Nirogacestat", - "Anti-EGFR Monoclonal Antibody EMD 55900", - "ALK/ROS1/Met Inhibitor TQ-B3101", - "pNGVL4a-CRT-E6E7L2 DNA Vaccine", - "Recombinant Leukoregulin", - "Cancer Peptide Vaccine S-588410", - "GBM Antigens and Alloantigens Immunotherapeutic Vaccine", - "Clanfenur", - "" - ] - }, - "Individual Tumor Grade": { - "enum": [ - "Intermediate Grade", - "GX", - "Not Applicable", - "G1", - "unknown", - "GB", - "G3", - "G4", - "High Grade", - "Not Reported", - "Low Grade", - "G2", - "" - ] - }, - "Individual Treatment Outcome": { - "enum": [ - "No Measurable Disease", - "unknown", - "Persistent Disease", - "Treatment Stopped Due to Toxicity", - "Partial Response", - "Treatment Ongoing", - "Very Good Partial Response", - "Mixed Response", - "Progressive Disease", - "Not Reported", - "No Response", - "Stable Disease", - "Complete Response", - "" - ] - }, - "Individual_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Individual Known Metastasis Sites": { - "type": "array", - "items": { - "enum": [ - "Thymus", - "Acetabulum", - "Mandible", - "Cerebrospinal Fluid", - "Lymph Node(s) Cervical", - "Lymph Node(s) Subclavicular", - "Subcutaneous Tissue", - "Heart", - "Uterus", - "Periorbital Soft Tissue", - "Lung", - "Foreskin", - "Ovary", - "Bowel", - "Pineal Gland", - "Sinus", - "Cartilage", - "Breast", - "Anal Sphincter", - "Pituitary Gland", - "Tonsil (Pharyngeal)", - "Fluid", - "Stomach - Mucosa Only", - "Foot", - "Endocrine Gland", - "Anorectum", - "Lymph Node(s) Iliac-External", - "Urinary Tract", - "Femoral Artery", - "Lymph Node(s) Hilar", - "Gastrointestinal Tract", - "Ilium", - "Testis", - "Antecubital Fossa", - "Cardia", - "Paranasal Sinuses", - "Umbilical Cord", - "Lymph Node(s) Distant", - "Fundus Of Stomach", - "Calf", - "Supraglottis", - "Buccal Mucosa", - "Tongue", - "Hepatic", - "Spinal Cord", - "Lymph Node(s) Pelvic", - "Index Finger", - "Central Nervous System", - "Lymph Node(s) Femoral", - "Spleen", - "Forehead", - "Esophageal; Distal", - "Anus", - "Ampulla Of Vater", - "Esophagus - Mucosa Only", - "Humerus", - "Islet Cells", - "Urethra", - "Lymph Node(s) Mammary", - "Patella", - "Vein", - "Retina", - "Ear Canal", - "Trachea / Major Bronchi", - "Cerebellum", - "Tonsil", - "White Blood Cells", - "Lymph Node(s) Parotid", - "Retro-Orbital Region", - "Small Finger", - "Aorta", - "Epididymis", - "Ear", - "Vas Deferens", - "Lymph Node(s) Scalene", - "Ischium", - "Palate", - "Aqueous Fluid", - "Lumbar Spine", - "Pharynx", - "Adenoid", - "Aortic Body", - "Lymph Node(s) Supraclavicular", - "Abdomen", - "Abdominal Wall", - "Antrum", - "Ocular Orbits", - "Connective Tissue", - "Rib", - "Ureter", - "Ear; Pinna (External)", - "Kidney", - "Eye", - "Esophagogastric Junction", - "Leg", - "Not Reported", - "Lymph Node(s) Submandibular", - "Popliteal Fossa", - "Hepatic Duct", - "Ganglia", - "Sternum", - "Duodenum", - "Adrenal", - "Rectum", - "Lymph Node(s) Retroperitoneal", - "Pericardium", - "Bronchiole", - "Capillary", - "Colon", - "Nasal Soft Tissue", - "Subglottis", - "Carina", - "Nerve(s) Cranial", - "Cervix", - "Bone", - "Vertebra", - "Ileum", - "Chest Wall", - "Gum", - "Mitochondria", - "other", - "Pineal", - "Throat", - "Oropharynx", - "Dermal", - "Brain", - "Peritoneum", - "Parotid Gland", - "Peritoneal Cavity", - "Rectosigmoid Junction", - "Hard Palate", - "Leptomeninges", - "Neck", - "Thorax", - "Esophageal; Proximal", - "Skull", - "Clitoris", - "Effusion", - "Transverse Colon", - "Auditory Canal", - "Large Bowel", - "unknown", - "Lymph Node(s) Splenic", - "Ascending Colon", - "Bone Marrow", - "Seminal Vesicle", - "Frontal Lobe", - "Ligament", - "Femur", - "Temporal Cortex", - "Lymph Node(s) Regional", - "Scrotum", - "Pelvis", - "Venous", - "Not Allowed To Collect", - "Lip", - "Elbow", - "Lymph Node", - "Lymph Node(s) Axilla", - "Shoulder", - "Mesentery", - "Lymph Node(s) Iliac-Common", - "Nasopharynx", - "Parathyroid", - "Lymph Node(s) Internal Mammary", - "Lymph Node(s) Occipital", - "Paraspinal Ganglion", - "Thoracic Spine", - "Wrist", - "Chest", - "Pleura", - "Jaw", - "Liver", - "Axilla", - "Diaphragm", - "Bile Duct", - "Placenta", - "Ankle", - "Small Bowel", - "Conjunctiva", - "Lymph Node(s) Popliteal", - "Lymph Nodes(s) Mediastinal", - "Mediastinal Soft Tissue", - "Jejunum", - "Head - Face Or Neck; Nos", - "Middle Finger", - "Vagina", - "Blood Vessel", - "Esophagus", - "Ring Finger", - "Soft Tissue", - "Submandibular Gland", - "Splenic Flexure", - "Skin", - "Stomach", - "Descending Colon", - "Common Duct", - "Nails", - "Occipital Cortex", - "Uvula", - "Buccal Cavity", - "Adipose", - "Sacrum", - "Prostate", - "Gastroesophageal Junction", - "Mediastinum", - "Lymph Node(s) Epitrochlear", - "Trunk", - "Appendix", - "Groin", - "Sinus(es); Maxillary", - "Floor Of Mouth", - "Tibia", - "Cerebrum", - "Cerebral Cortex", - "Skeletal Muscle", - "Hip", - "Femoral Vein", - "Synovium", - "Brain Stem", - "Back", - "Laryngopharynx", - "Clavicle", - "Lymph Node(s) Paraaortic", - "Penis", - "Blood", - "Small Bowel - Mucosa Only", - "Carotid Body", - "Fibroblasts", - "Maxilla", - "Oral Cavity", - "Gallbladder", - "Thigh", - "Esophageal; Mid", - "Thyroid", - "Alveolar Ridge", - "Pylorus", - "Arm", - "Autonomic Nervous System", - "Salivary Gland", - "Frontal Cortex", - "Hepatic Vein", - "Hippocampus", - "Tendon", - "Head & Neck", - "Bronchus", - "Finger", - "Carotid Artery", - "Colon - Mucosa Only", - "Scalp", - "Sublingual Gland", - "Chin", - "Lymph Node(s) Inguinal", - "Omentum", - "Sciatic Nerve", - "Sigmoid Colon", - "Round Ligament", - "Cervical Spine", - "Lymph Node(s) Mesenteric", - "Hypopharynx", - "Mesothelium", - "Brow", - "Cecum", - "Knee", - "Thumb", - "Glottis", - "Fallopian Tube", - "Nasal Cavity", - "Bladder", - "Ascending Colon Hepatic Flexure", - "Broad Ligament", - "Amniotic Fluid", - "Lacrimal Gland", - "Epidural Space", - "Hand", - "Muscle", - "Nerve", - "Scapula", - "Retroperitoneum", - "Larynx", - "Forearm", - "Pancreas", - "Artery", - "Vulva", - "Hepatic Flexure", - "Spinal Column", - "Joint", - "Fibula", - "Buttock", - "Oral Cavity - Mucosa Only", - "Cell-Line", - "" - ] - }, - "maxItems": 291 - }, - "Individual Days to Treatment": {}, - "Individual Primary Tumor Stage": { - "enum": [ - "T2b", - "T1b2", - "T3d", - "T4d", - "T2", - "T2c", - "Tis", - "T3b", - "T4e", - "Not Reported", - "T3a", - "T2a", - "T1", - "TX", - "T1b1", - "T2a1", - "T0", - "Tis (LCIS)", - "Ta", - "T1b", - "T4a", - "T2a2", - "T3c", - "T4b", - "T1c", - "T1a1", - "T3", - "T1a", - "T4", - "unknown", - "T4c", - "T1a2", - "Tis (Paget's)", - "Tis (DCIS)", - "T1mi", - "T2d", - "" - ] - }, - "Individual Treatment Type": { - "enum": [ - "Radiation Therapy; NOS", - "Ablation; Radiosurgical", - "Radiation; 2D Conventional", - "Radiation; External Beam", - "Stem Cell Transplantation; Haploidentical", - "Brachytherapy; Low Dose", - "Organ Transplantation", - "Radiation; 3D Conformal", - "Radiation; Cyberknife", - "Radiation; Implants", - "Ablation; NOS", - "Targeted Molecular Therapy", - "Brachytherapy; NOS", - "Radiation; Photon Beam", - "Stem Cell Transplantation; NOS", - "Not Reported", - "Cryoablation", - "External Beam Radiation", - "Pleurodesis; Talc", - "Ethanol Injection Ablation", - "Radioembolization", - "Radiation; Stereotactic/Gamma Knife/SRS", - "Radiation; Radioisotope", - "Radiation; Internal", - "Stem Cell Transplantation; Allogeneic", - "Stem Cell Transplantation; Syngenic", - "Radiation; Combination", - "Stem Cell Transplantation; Autologous", - "Stem Cell Transplantation; Non-Myeloablative", - "Surgery", - "Concurrent Chemoradiation", - "Ablation; Radiofrequency", - "Radiation; Systemic", - "Internal Radiation", - "Steroid Therapy", - "Bisphosphonate Therapy", - "Ancillary Treatment", - "Chemoembolization", - "Radioactive Iodine Therapy", - "Ablation; Microwave", - "other", - "Chemotherapy", - "Hormone Therapy", - "Embolization", - "Ablation; Cryo", - "Antiseizure Treatment", - "Radiosensitizing Agent", - "Stereotactic Radiosurgery", - "Radiation; Proton Beam", - "Radiation; Mixed Photon Beam", - "Pleurodesis; NOS", - "Chemoprotectant", - "Immunotherapy (Including Vaccines)", - "unknown", - "Stem Cell Transplantation; Double Autologous", - "Radiation; Intensity-Modulated Radiotherapy", - "Radiation; Hypofractionated", - "Ablation; Ethanol Injection", - "Pharmaceutical Therapy; NOS", - "I-131 Radiation Therapy", - "Brachytherapy; High Dose", - "Stem Cell Treatment", - "Isolated Limb Perfusion (ILP)", - "Blinded Study; Treatment Unknown", - "Pleurodesis", - "" - ] - }, - "Individual Sex": { - "enum": [ - "Female", - "unknown", - "Male", - "Don't know", - "None of these describe me", - "Prefer not to answer", - "X", - "Intersex", - "Decline to answer", - "" - ] - }, - "Individual Last Known Disease Status": { - "enum": [ - "Biochemical evidence of disease without structural correlate", - "Distant met recurrence/progression", - "With Tumor", - "Loco-regional recurrence/progression", - "Not Applicable", - "Deceased", - "Not Reported", - "Unknown Tumor Status", - "Not Allowed To Collect", - "Tumor free", - "" - ] - }, - "Individual Gender": { - "enum": [ - "unspecified", - "Female", - "Non-Binary", - "unknown", - "Prefer Not to Answer", - "Male", - "Not Reported" - ] - } - }, - "required": [ - "Component", - "Individual Primary Diagnosis", - "Individual_id", - "Individual Gender" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.Model.schema.json b/json_schemas/mc2.Model.schema.json deleted file mode 100644 index 820f425b..00000000 --- a/json_schemas/mc2.Model.schema.json +++ /dev/null @@ -1,7523 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Model Source": {}, - "Model Treatment Type": { - "enum": [ - "Ablation; Radiofrequency", - "Radiation; 2D Conventional", - "Radiation; Implants", - "Radioembolization", - "Chemoembolization", - "Stem Cell Transplantation; Haploidentical", - "Ancillary Treatment", - "Cryoablation", - "Stem Cell Transplantation; Allogeneic", - "I-131 Radiation Therapy", - "Stem Cell Transplantation; Double Autologous", - "Radiation; Photon Beam", - "Pharmaceutical Therapy; NOS", - "Pleurodesis; Talc", - "Radiation; 3D Conformal", - "Radiosensitizing Agent", - "Chemoprotectant", - "other", - "Brachytherapy; High Dose", - "Surgery", - "Ablation; Microwave", - "Embolization", - "Ablation; Ethanol Injection", - "Brachytherapy; NOS", - "Not Reported", - "Organ Transplantation", - "Pleurodesis; NOS", - "Stem Cell Transplantation; Syngenic", - "Radiation; Internal", - "Stem Cell Treatment", - "Pleurodesis", - "Radiation; Systemic", - "Stereotactic Radiosurgery", - "Hormone Therapy", - "Ablation; Radiosurgical", - "Stem Cell Transplantation; Autologous", - "Blinded Study; Treatment Unknown", - "Stem Cell Transplantation; NOS", - "Radiation; Hypofractionated", - "Steroid Therapy", - "Radiation; External Beam", - "Ablation; NOS", - "Radiation Therapy; NOS", - "Radiation; Intensity-Modulated Radiotherapy", - "Radioactive Iodine Therapy", - "Radiation; Combination", - "Radiation; Cyberknife", - "Internal Radiation", - "Stem Cell Transplantation; Non-Myeloablative", - "unknown", - "Chemotherapy", - "Radiation; Proton Beam", - "Radiation; Mixed Photon Beam", - "Radiation; Stereotactic/Gamma Knife/SRS", - "Bisphosphonate Therapy", - "Ablation; Cryo", - "Ethanol Injection Ablation", - "External Beam Radiation", - "Concurrent Chemoradiation", - "Isolated Limb Perfusion (ILP)", - "Brachytherapy; Low Dose", - "Immunotherapy (Including Vaccines)", - "Targeted Molecular Therapy", - "Antiseizure Treatment", - "Radiation; Radioisotope", - "" - ] - }, - "Model Method": {}, - "Model_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Model Type": {}, - "Model Age": {}, - "Study Key": {}, - "Model Genotype": {}, - "Model Tumor Type": {}, - "Model Graft Source": {}, - "Model Acquisition Type": {}, - "Model Species": { - "type": "array", - "items": { - "enum": [ - "Human", - "Worm", - "Cow", - "Human Cell Line", - "Opossum", - "Trichoplax adhaerens", - "Guinea Pig", - "Boar", - "Escherichia coli", - "Rabbit", - "Horse", - "unspecified", - "Cat", - "Mouse", - "Rat", - "Rhesus monkey", - "Multispecies", - "Sheep", - "Chicken", - "Human Patient", - "unknown", - "Dog", - "Zebrafish", - "African Bush Elephant", - "Armadillo", - "Yeast", - "Fruit Fly", - "Asian Elephant", - "" - ] - }, - "maxItems": 28 - }, - "Model Tumor Subtype": {}, - "Model Sex": { - "enum": [ - "Don't know", - "Female", - "Intersex", - "Prefer not to answer", - "None of these describe me", - "X", - "Decline to answer", - "unknown", - "Male", - "" - ] - }, - "Model Age Unit": {}, - "Individual Key": {}, - "Model Site of Origin": { - "enum": [ - "Other and Ill-Defined Sites within Respiratory System and Intrathoracic Organs ICD-O-3", - "Anus", - "Vagina", - "Brain Stem", - "Endocrine Gland", - "Pelvic Lymph Node", - "Skene Gland", - "Bladder Neck", - "Epididymis", - "Floor of Mouth", - "Ectocervix", - "Base of the Tongue", - "Endometrium", - "Labium Majus", - "Skin of the Upper Limb and Shoulder", - "Eye", - "Mandible", - "Cecum", - "Cornea", - "Adrenal Medulla", - "Greater Curvature of the Stomach", - "Peritoneum", - "Upper Respiratory System", - "Lower Lobe of the Lung", - "Trachea", - "Carotid Body", - "Palatine Tonsil", - "Not Reported", - "Splenic Flexure", - "Middle Ear", - "Meninges", - "Heart", - "Sigmoid Colon", - "Prepuce", - "Glans Penis", - "Myometrium", - "Lung", - "Prostate Gland", - "Small Intestine", - "Olfactory Nerve", - "Oral Cavity", - "Subglottis", - "Tail of the Pancreas", - "Clitoris", - "Parotid Gland", - "Anal Canal", - "Bone", - "Axillary Lymph Node", - "Bone Marrow", - "Endocervix", - "Lymph Node", - "Rectosigmoid Region", - "Sphenoid Sinus", - "Cranial Nerve", - "Craniopharyngeal Duct", - "Waldeyer Ring", - "Ill-Defined Anatomic Site", - "Fallopian Tube", - "Upper Gingiva", - "Brain Ventricle", - "Esophagus", - "Adrenal Cortex", - "Urachus", - "Eyelid", - "Hepatic Flexure", - "Duodenum", - "Upper-Outer Quadrant of the Breast", - "Thymus Gland", - "Submandibular Gland", - "Superior Wall of the Nasopharynx", - "Bladder Trigone", - "Lower Gingiva", - "Lower Third of the Esophagus", - "Orbit", - "Cervical Esophagus", - "Anterior Wall of the Bladder", - "Ampulla of Vater", - "Anterior Mediastinum", - "Pyriform Sinus", - "Retroperitoneum", - "Cerebral Hemisphere", - "Lateral Wall of the Oropharynx", - "Temporal Lobe", - "Thoracic Esophagus", - "Pharynx", - "Postcricoid Region", - "Anterior Surface of the Epiglottis", - "Pleura", - "Dome of the Bladder", - "Reticuloendothelial System", - "Vertebral Column", - "Hypopharynx", - "Abdomen", - "Extrahepatic Bile Duct", - "Appendage of the Uterus", - "Lower-Outer Quadrant of the Breast", - "Retromolar Trigone", - "Penis", - "Biliary Tract", - "Broad Ligament", - "Pancreatic Duct", - "External Lip", - "Buccal Mucosa", - "Upper Lobe of the Lung", - "Liver", - "Bladder", - "Commissure of the Lip", - "Lower Extremity", - "Middle Third of the Esophagus", - "unknown", - "Thyroid Gland", - "Antrum Pylori", - "Ciliary Body", - "Cervix Uteri", - "Frontal Sinus", - "Uvula", - "Supraglottis", - "Pancreas", - "Pituitary Gland", - "Hard Palate", - "Mucosa of the Lip", - "Maxillary Sinus", - "Conjunctiva", - "Ascending Colon", - "Skin", - "Intrathoracic Lymph Node", - "Posterior Mediastinum", - "Cauda Equina", - "Nervous System", - "Lacrimal Gland", - "Adrenal Gland", - "Soft Palate", - "Nasal Cavity", - "Cochlear Nerve", - "Nasopharynx", - "Pelvis", - "Ureter", - "Lymph Node of Inguinal Region or Leg", - "Pylorus", - "Abdominal Esophagus", - "Anal Transitional Zone", - "Frontal Lobe", - "Laryngeal Cartilage", - "Lingual Tonsil", - "Intrahepatic Bile Duct", - "Parametrium", - "Parietal Lobe", - "External Ear", - "Spermatic Cord", - "Posterior Wall of the Nasopharynx", - "Gastric Cardia", - "Ileum", - "Palate", - "Isthmus Uteri", - "Spinal Meninges", - "Other and Unspecified Male Genital Organs ICD-O-3", - "Salivary Gland", - "Jejunum", - "Round Ligament", - "Stomach", - "Fundus Uteri", - "Mucosa of the Upper Lip", - "Posterior Wall of the Bladder", - "Skin of the Lip", - "Breast", - "Gingiva", - "Testis", - "Cerebellum", - "Branchial Cleft Remnant", - "Descending Colon", - "Posterior Wall of the Hypopharynx", - "Central Portion of the Breast", - "Mediastinum", - "Intra-Abdominal Lymph Node", - "Larynx", - "Skin of the Face", - "Choroid", - "Body of Stomach", - "Labium Minus", - "Oropharynx", - "Bone of the Extremity", - "External Lower Lip", - "Optic Nerve", - "Vulva", - "Gastrointestinal Tract", - "Autonomic Nervous System", - "Placenta", - "Nipple", - "Parathyroid Gland", - "Vallecula", - "Body of the Penis", - "Intestine", - "Primary Site Unknown", - "Brain", - "Occipital Lobe", - "Upper Third of the Esophagus", - "Axillary Tail of the Breast", - "Head of the Pancreas", - "Lower-Inner Quadrant of the Breast", - "Body of the Pancreas", - "Mucosa of the Lower Lip", - "Tongue", - "Upper-Inner Quadrant of the Breast", - "Glottis", - "Islet of Langerhans", - "Female Genitalia", - "Skin of the Lower Limb and Hip", - "Colon", - "Renal Pelvis", - "Hematopoietic System", - "Fundus of the Stomach", - "Main Bronchus", - "Lateral Wall of the Bladder", - "Posterior Wall of the Oropharynx", - "Sublingual Salivary Gland", - "Paranasal Sinus", - "Corpus Uteri", - "Ovary", - "Meckel Diverticulum", - "Appendix", - "Tonsillar Fossa", - "Urinary System", - "Gallbladder", - "Pineal Gland", - "Skin of the Scalp and Neck", - "Male Genitalia", - "Lip", - "Other and Unspecified Female Genital Organs ICD-O-3", - "Transverse Colon", - "Ureteric Orifice", - "Kidney", - "Retina", - "Rectum", - "Uterus", - "Middle Lobe of the Right Lung", - "Head and Neck Lymph Node", - "Scrotum", - "Thorax", - "Tonsillar Pillar", - "Undescended Testes", - "Anterior Wall of the Nasopharynx", - "Spleen", - "Cerebral Meninges", - "Lesser Curvature of the Stomach", - "Upper Extremity", - "Lateral Wall of the Nasopharynx", - "Other Specified Parts of Pancreas", - "Blood", - "Spinal Cord", - "External Upper Lip", - "Vestibule of Mouth", - "Skin of the Trunk", - "Urethra", - "Ethmoid Sinus" - ] - }, - "Model Primary Diagnosis": { - "enum": [ - "Adenocarcinoma in situ in tubulovillous adenoma", - "Large cell (Ki-1+) lymphoma", - "Mucinous cystadenocarcinoma; non-invasive", - "Clear cell adenofibroma", - "Thymoma; type B2; NOS", - "Malignant lymphoma; mixed cell type; follicular", - "Plasmacytoma of bone", - "Epithelioid and spindle cell nevus", - "Mucinous carcinoma; gastric type", - "Multiple adenomatous polyps", - "Thymoma; epithelial; malignant", - "Combined small cell-squamous cell carcinoma", - "Refractory anemia", - "Teratoblastoma; malignant", - "Androblastoma; benign", - "Immature teratoma; NOS", - "Intraductal papillary neoplasm with intermediate grade neoplasia", - "Neuroendocrine carcinoma; low grade", - "Lymphoproliferative disease; NOS", - "Folliculome lipidique", - "Hidrocystoma", - "Tumor; benign", - "Pilomatrixoma; NOS", - "Histiocytosis X; NOS", - "Adenocarcinoma of rete ovarii", - "B-cell lymphoma; unclassifiable; with features intermediate between diffuse large B-cell lymphoma and classical Hodgkin lymphoma", - "Alveolar soft part sarcoma", - "Mucinous tubular and spindle cell carcinoma", - "Alveolar cell carcinoma", - "Ameloblastic fibroma", - "Solid adenocarcinoma with mucin formation", - "Malignant lymphoma; large cell; noncleaved; NOS", - "Malignant lymphoma; large cell; noncleaved; follicular", - "Invasive lobular carcinoma", - "Noninvasive pancreatobiliary papillary neoplasm with low grade dysplasia", - "Glomus tumor; NOS", - "Giant cell tumor of tendon sheath", - "Pleomorphic adenoma", - "Carotid body paraganglioma", - "Malignant lymphoma; non-Hodgkin; NOS", - "Aleukemic monocytic leukemia", - "Classical Hodgkin lymphoma; nodular sclerosis; cellular phase", - "Soft tissue tumor; benign", - "Mesoblastic nephroma", - "Large cell carcinoma; NOS", - "Malignant perivascular epithelial cell tumor", - "Immunoproliferative disease; NOS", - "Collecting duct carcinoma", - "Myxofibroma; NOS", - "Syringomatous carcinoma", - "Cylindrical cell carcinoma", - "Adenoid cystic carcinoma", - "GIST; NOS", - "Splenic lymphoma with villous lymphocytes", - "Squamous cell epithelioma", - "Calcifying nested epithelial stromal tumor", - "Duct adenoma; NOS", - "Testicular stromal tumor", - "Poorly cohesive carcinoma", - "Fibromyxolipoma", - "Pheochromocytoma; malignant", - "B lymphoblastic leukemia/lymphoma with t(1;19)(q23;p13.3); E2A-PBX1 (TCF3-PBX1)", - "Papillary tumor of the pineal region", - "Glioma; malignant", - "Mature T-cell lymphoma; NOS", - "Malignant lymphoma; histiocytic; NOS", - "CIN III with severe dysplasia", - "Epithelioid mesothelioma; benign", - "Vipoma; malignant", - "Craniopharyngioma; adamantinomatous", - "Malignant rhabdoid tumor", - "Non-invasive mammary carcinoma", - "Anaplastic oligoastrocytoma", - "Papillary serous cystadenocarcinoma", - "Polycythemia vera", - "Masculinovoblastoma", - "Undifferentiated uterine sarcoma", - "G cell tumor; malignant", - "Adenocarcinoma in villous adenoma", - "Primary cutaneous follicle centre lymphoma", - "Adult T-cell leukemia/lymphoma (HTLV-1 positive) (includes all variants)", - "Water-clear cell carcinoma", - "Hairy cell leukaemia variant", - "Squamous cell carcinoma; small cell; nonkeratinizing", - "Jugulotympanic paraganglioma", - "Acute erythremia", - "Odontogenic sarcoma", - "Juvenile angiofibroma", - "Intermediate and giant congenital nevus", - "Lymphoepithelioid lymphoma", - "Mixed phenotype acute leukemia with t(9;22)(q34;q11.2); BCR-ABL1", - "Refractory anemia with excess blasts", - "Adult granulosa cell tumor", - "Cartilaginous exostosis", - "Follicular lymphoma; grade 3A", - "Ossifying fibromyxoid tumor", - "Sertoli cell carcinoma", - "Mucoid cell adenocarcinoma", - "Medullomyoblastoma", - "Lymphosarcoma cell leukemia", - "RAEB-T", - "Dedifferentiated chordoma", - "Mast cell sarcoma", - "Dysplastic gangliocytoma of cerebellum (Lhermitte-Duclos)", - "Primary cutaneous CD8-positive aggressive epidermotropic cytotoxic T-cell lymphoma", - "Papillary cystadenoma lymphomatosum", - "Urothelial papilloma; NOS", - "Clear cell cystadenofibroma", - "Follicular adenoma; oxyphilic cell", - "Intraductal carcinoma and lobular carcinoma in situ", - "Carcinoma in pleomorphic adenoma", - "Desmoplastic infantile ganglioglioma", - "Inflammatory myofibroblastic tumor", - "Macrofollicular adenoma", - "Malignant tumor; clear cell type", - "Hilus cell tumor", - "Intraductal papillary-mucinous adenoma", - "Angiomyofibroblastoma", - "Interstitial cell tumor; NOS", - "Noninfiltrating intraductal papillary adenocarcinoma", - "Preleukemia", - "Mucinous cystadenocarcinofibroma", - "Tubular adenocarcinoma", - "Sarcoma; NOS", - "Lactating adenoma", - "Hilar cell tumor", - "Myxoliposarcoma", - "Papillary carcinoma of thyroid", - "Precursor B-cell lymphoblastic lymphoma", - "Neuroendocrine tumor; grade 2", - "Combined small cell-adenocarcinoma", - "Mucous carcinoma", - "Lepidic adenocarcinoma", - "Pleomorphic rhabdomyosarcoma; adult type", - "Non-invasive FTP", - "Composite Hodgkin and non-Hodgkin lymphoma", - "Tumor; malignant; NOS", - "Stem cell leukemia", - "Stromal myosis; NOS", - "Therapy-related acute myeloid leukemia; NOS", - "Dermoid cyst with malignant transformation", - "Chronic lymphoproliferative disorder of NK cells", - "Squamous cell carcinoma; keratinizing; NOS", - "Blue nevus; malignant", - "Malignant melanoma in precancerous melanosis", - "Cystic tumor of atrio-ventricular node", - "Adnexal carcinoma", - "Arrhenoblastoma; malignant", - "Cortical T ALL", - "Proliferating trichilemmal cyst", - "Intraductal papillary adenocarcinoma with invasion", - "Urothelial carcinoma with trophoblastic differentiation", - "Serrated adenocarcinoma", - "Infiltrating ductular carcinoma", - "Malignant lymphoma; undifferentiated cell; non-Burkitt", - "Chronic myeloproliferative disease; NOS", - "Langerhans cell sarcoma", - "Infiltrating duct and lobular carcinoma in situ", - "Eccrine poroma; malignant", - "Pilomyxoid astrocytoma", - "Brown fat tumor", - "Adenofibroma; NOS", - "Gastrointestinal stromal tumor; benign", - "Malignant lymphoma; Hodgkin", - "Junctional nevus; NOS", - "Intraductal papilloma", - "Noninvasive pancreatobiliary papillary neoplasm with high grade dysplasia", - "Trichodiscoma", - "Hepatoblastoma; mixed epithelial-mesenchymal", - "Papillary transitional cell carcinoma", - "Typical carcinoid", - "Warthin tumor", - "Adrenal cortical adenoma; glomerulosa cell", - "Chronic granulocytic leukemia; Philadelphia chromosome (Ph1) positive", - "Astrocytoma; low grade", - "Cribriform comedo-type carcinoma", - "Soft tissue tumor; malignant", - "Fibrous histiocytoma; NOS", - "Endometrial stromatosis", - "Myofibroblastic tumor; NOS", - "Bednar tumor", - "Acute lymphatic leukemia", - "Multiple meningiomas", - "Thymoma; spindle cell; NOS", - "Acute monocytic leukemia", - "Malignant lymphoma; undifferentiated; Burkitt type", - "Classical Hodgkin lymphoma; lymphocyte depletion; diffuse fibrosis", - "Acute myelofibrosis", - "Skin appendage tumor; benign", - "Subacute myelogenous leukemia", - "Signet ring cell adenocarcinoma", - "Hemangiopericytic meningioma", - "Giant cell tumor of tendon sheath; malignant", - "Renomedullary interstitial cell tumor", - "Hepatoma; benign", - "Serous endometrial intraepithelial carcinoma", - "Adenocarcinoma; metastatic; NOS", - "Haemangiosarcoma", - "Synovial sarcoma; NOS", - "Malignant lymphoma; lymphocytic; well differentiated; diffuse", - "Acute myeloid leukemia; AML1(CBF-alpha)/ETO", - "Endolymphatic stromal myosis", - "Cellular blue nevus", - "Lymphoepithelial carcinoma", - "Spindle epithelial tumor with thymus-like differentiation", - "Thymoma; lymphocyte-rich; malignant", - "Atypical fibroxanthoma", - "Carcinoma in situ in a polyp; NOS", - "Low-grade myofibroblastic sarcoma", - "Reticulum cell sarcoma; NOS", - "Invasive carcinoma; NST", - "Androblastoma; malignant", - "Peripheral odontogenic fibroma", - "Malignant peripheral nerve sheath tumor with rhabdomyoblastic differentiation", - "Carcinoma with neuroendocrine differentiation", - "Acute myeloid leukemia; inv(16)(p13;q22)", - "Angiofibroma; NOS", - "Gastrin cell tumor; malignant", - "Gliofibroma", - "Linitis plastica", - "Giant cell carcinoma", - "Meningioma; anaplastic", - "Nonencapsulated sclerosing tumor", - "Ceruminous adenoma", - "Adenocarcinoma; pancreatobiliary type", - "Lipid-rich urothelial carcinoma", - "Spongioblastoma multiforme", - "Acute myeloblastic leukemia", - "Mucinous carcinoid", - "Bowen disease", - "Serous cystadenoma; borderline malignancy", - "Eccrine papillary adenoma", - "Somatostatinoma; NOS", - "Carcinoma showing thymus-like element", - "Angiocentric T-cell lymphoma", - "Classical Hodgkin lymphoma; mixed cellularity; NOS", - "Mixed adenomatous and hyperplastic polyp", - "Intraepidermal epithelioma of Jadassohn", - "Carcinoma in a polyp; NOS", - "Papillary and follicular adenocarcinoma", - "Intraductal carcinoma; solid type", - "Paraganglioma; malignant", - "Granulosa cell-theca cell tumor", - "Osteosarcoma; NOS", - "Degenerated schwannoma", - "Follicular carcinoma; trabecular", - "Intraductal papillary-mucinous carcinoma; non-invasive", - "Pleomorphic lipoma", - "Glioblastoma; IDH-mutant", - "Diffuse cutaneous mastocytosis", - "Thymic carcinoma with adenoid cystic carcinoma-like features", - "Papilloma of bladder", - "VAIN III", - "Infiltrating papillary adenocarcinoma", - "Neuronevus", - "Blastoma; NOS", - "Mixed epithelioid and spindle cell melanoma", - "Osteofibroma", - "PEComa; malignant", - "Malignant tenosynovial giant cell tumor", - "Burkitt tumor", - "Carcinoma with osteoclast-like giant cells", - "Malignant tumor; fusiform cell type", - "Diffuse midline glioma; H3 K27M-mutant", - "Juvenile chronic myelomonocytic leukemia", - "Trabecular adenocarcinoma", - "Burkitt cell leukemia", - "Epithelioid MPNST", - "Adrenal cortical tumor; malignant", - "Encapsulated papillary carcinoma with invasion", - "Lymphosarcoma; NOS", - "Ductal carcinoma in situ; solid type", - "Malignant lymphoma; NOS", - "Juxtaglomerular tumor", - "Malignant lymphoma; noncleaved; NOS", - "Papillary renal cell carcinoma", - "Bronchiolar carcinoma", - "Mixed phenotype acute leukemia; B/myeloid; NOS", - "Atypical proliferative mucinous tumor", - "Syringoma; NOS", - "Glandular intraepithelial neoplasia; grade III", - "Transitional papilloma; inverted; NOS", - "Myoepithelial adenoma", - "Solitary plasmacytoma", - "Solid carcinoma; NOS", - "Chondromatous giant cell tumor", - "T-cell large granular lymphocytosis", - "Adenocarcinoma in adenomatous polyposis coli", - "Adenomyoepithelioma", - "Acute megakaryoblastic leukaemia", - "Burkitt lymphoma; NOS (Includes all variants)", - "Non-small cell carcinoma", - "Chondroid syringoma", - "Mesenchymoma; malignant", - "Follicular lymphoma; grade 3B", - "Clear cell sarcoma of kidney", - "Retinoblastoma; spontaneously regressed", - "Squamous cell carcinoma; nonkeratinizing; NOS", - "Urticaria pigmentosa", - "Metaplastic carcinoma with chondroid differentiation", - "Endometrioid carcinoma with squamous differentiation", - "Granulocytic sarcoma", - "Intravascular B-cell lymphoma", - "Hodgkin lymphoma; lymphocyte predominance; nodular", - "Hodgkin lymphoma; lymphocyte-rich", - "Solitary fibrous tumor/hemangiopericytoma Grade 3 (CNS)", - "Synovioma; NOS", - "Cutaneous histiocytoma; NOS", - "Symplastic leiomyoma", - "Anaplastic large cell lymphoma; ALK negative", - "Microcystic urothelial carcinoma", - "FAB M4Eo", - "Therapy-related myelodysplastic syndrome; alkylating agent related", - "Basosquamous carcinoma", - "Psammomatous meningioma", - "Myeloid and lymphoid neoplasms with FGFR1 abnormalities", - "Follicular adenocarcinoma; NOS", - "Duct cell carcinoma", - "Fetal lipomatosis", - "Intraductal papillary-mucinous tumor with intermediate dysplasia", - "Nested urothelial carcinoma", - "Spermatocytoma", - "Spindle cell carcinoma; NOS", - "Sertoli-Leydig cell tumor; poorly differentiated; with heterologous elements", - "Angiomatous meningioma", - "Intraductal micropapillary carcinoma", - "Aleukemic granulocytic leukemia", - "Mesothelioma; benign", - "MPNST with rhabdomyoblastic differentiation", - "Hepatoid carcinoma", - "Atypical polypoid adenomyoma", - "Hepatocellular carcinoma; fibrolamellar", - "Serous cystadenofibroma of borderline malignancy", - "Mixed acidophil-basophil adenoma", - "Bile duct adenocarcinoma", - "Gemistocytic astrocytoma", - "Struma ovarii; NOS", - "Pulmonary myxoid sarcoma with EWSR1-CREB1 translocation", - "Hairy cell leukemia variant", - "Infiltrating duct carcinoma; NOS", - "Plasma cell leukemia", - "Smooth muscle tumor; NOS", - "Carcinoma in situ in adenomatous polyp", - "Verrucous papilloma", - "B lymphoblastic leukemia/lymphoma with hypodiploidy (Hypodiploid ALL)", - "Micropapillary adenocarcinoma", - "Myelocytic leukemia; NOS", - "Immunoproliferative small intestinal disease", - "Invasive carcinoma of no special type", - "Malignant lymphoma; histiocytic; nodular", - "Calcifying epithelial odontogenic tumor", - "Follicular carcinoma; well differentiated", - "Synovial sarcoma; biphasic", - "Cylindrical cell papilloma", - "Hyalinizing trabecular adenoma", - "Parosteal osteosarcoma", - "Papillary pseudomucinous cystadenocarcinoma", - "Plasma cell myeloma", - "Pseudomucinous cystadenocarcinoma; NOS", - "Squamous cell carcinoma; large cell; keratinizing", - "Bronchio-alveolar carcinoma; mucinous", - "Acute myelocytic leukemia", - "Ductal papilloma", - "Cavernous hemangioma", - "Papillary epidermoid carcinoma", - "Adult cystic teratoma", - "Neuroastrocytoma", - "Papillary pseudomucinous cystadenoma; NOS", - "Racemose hemangioma", - "Langerhans cell histiocytosis; mono-ostotic", - "Eccrine papillary adenocarcinoma", - "Glioblastoma with sarcomatous component", - "FAB MO", - "Granular cell myoblastoma; malignant", - "Medulloepithelioma; benign", - "Lymphangiomyoma", - "Monocytoid B-cell lymphoma", - "Malignant hydatidiform mole", - "MiT family translocation renal cell carcinoma", - "Glucagon-like peptide-producing tumor", - "Juxtacortical osteosarcoma", - "Endometrioid cystadenofibroma; NOS", - "Extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue", - "Systemic mastocytosis with associated hematological clonal non-mast cell disorder", - "Wolffian duct tumor", - "Granular cell tumor; NOS", - "Choroid plexus papilloma; malignant", - "Jadassohn blue nevus", - "Invasive fibroma", - "Epithelioma; malignant", - "Malignant lymphoma; large B-cell; diffuse; immunoblastic; NOS", - "Mixed mesenchymal sarcoma", - "Water-clear cell adenoma", - "Islet cell adenomatosis", - "Malignant lymphoma; centroblastic; diffuse", - "Esophageal squamous intraepithelial neoplasia (dysplasia); low grade", - "Fibroblastic reticular cell tumor", - "FAB M2; t(8;21)(q22;q22)", - "Prolymphocytic leukemia; NOS", - "Adult T-cell lymphoma", - "Basal cell epithelioma", - "Myelodysplastic syndrome; NOS", - "Acute myelomonocytic leukemia with abnormal eosinophils", - "Hepatocellular adenoma", - "Neurofibromatosis; NOS", - "Mesothelioma; NOS", - "Merkel cell tumor", - "Fibrosarcomatous dermatofibrosarcoma protuberans", - "Osteoma; NOS", - "Trabecular carcinoma", - "Meningeal sarcomatosis", - "Basal cell carcinoma; micronodular", - "Malignant fibrous histiocytoma (MFH) of bone", - "Medulloblastoma; non-WNT/non-SHH", - "Acute bilineal leukemia", - "Fibroepithelioma of Pinkus type", - "Nodal marginal zone lymphoma", - "Verrucous epidermoid carcinoma", - "Acute myelomonocytic leukemia", - "Anaplastic large cell lymphoma; T cell and Null cell type", - "Papillary cystadenoma; NOS", - "Monomorphic adenoma", - "Myelofibrosis as a result of myeloproliferative disease", - "Mucinous cystic tumor with high-grade dysplasia", - "Desmoplastic infantile astrocytoma", - "Intracystic papillary tumor with high grade dysplasia", - "Trophoblastic tumor; epithelioid", - "Mixed endocrine and exocrine adenocarcinoma", - "MANEC", - "Telangiectatic osteosarcoma", - "Bronchial adenoma; cylindroid", - "Gastrointestinal stromal tumor; NOS", - "Microcystic adenoma", - "Infiltrating angiolipoma", - "Melanotic progonoma", - "Thymoma; type A; malignant", - "Adamantinoma; NOS", - "Hidradenoma; NOS", - "Infiltrating duct and cribriform carcinoma", - "Islet cell tumor; benign", - "Thymoma; lymphocytic; malignant", - "Brooke tumor", - "Diffuse astrocytoma", - "Atypical fibrous histiocytoma", - "Gastrin cell tumor", - "Diffuse melanocytosis", - "Ductal carcinoma in situ; micropapillary", - "Superficial spreading adenocarcinoma", - "Urothelial carcinoma; NOS", - "Angiomyolipoma", - "Malignant lymphoma; large cell; noncleaved; diffuse", - "Spindle cell lipoma", - "Clear cell meningioma", - "B-ALL", - "Solid pseudopapillary tumor", - "Malignant lymphoma; lymphoblastic; NOS", - "Mixed cell adenoma", - "Carcinoma; NOS", - "Monoclonal gammopathy; NOS", - "Round cell osteosarcoma", - "Oncocytoma", - "Adrenal cortical adenoma; clear cell", - "High-grade serous carcinoma", - "Sessile serrated polyp", - "Intraductal papillary neoplasm with associated invasive carcinoma", - "Thymic carcinoma; NOS", - "Infiltrating duct and lobular carcinoma", - "Large B-cell lymphoma arising in HHV8-associated multicentric Castleman disease", - "Chromaffinoma", - "Papillary and follicular carcinoma", - "Insulinoma; malignant", - "Capillary hemangioma", - "Intramuscular hemangioma", - "Pleomorphic lobular carcinoma in situ", - "Sertoli-Leydig cell tumor; NOS", - "Benign cystic nephroma", - "Myelodysplastic syndrome with isolated del (5q)", - "Intracystic papillary neoplasm with associated invasive carcinoma", - "T/NK-cell lymphoma", - "Fibrous histiocytoma of tendon sheath", - "Glandular intraepithelial neoplasia; grade I", - "Osteoblastoma; malignant", - "Di Guglielmo disease", - "GANT", - "Precancerous melanosis; NOS", - "Follicular adenoma", - "Venous hemangioma", - "Villoglandular carcinoma", - "Fibrofolliculoma", - "Adenocarcinoma with cartilaginous metaplasia", - "NUT midline carcinoma", - "Duct carcinoma; desmoplastic type", - "Intraductal carcinoma; clinging", - "Pancreatic endocrine tumor; NOS", - "Mesonephroma; malignant", - "Dermatofibroma lenticulare", - "Large cell medulloblastoma", - "Stromal tumor; NOS", - "Intraductal papillary-mucinous tumor with moderate dysplasia", - "Myelodysplastic/myeloproliferative neoplasm; unclassifiable", - "Von Recklinghausen disease", - "Myofibroblastic sarcoma", - "Achromic nevus", - "Sarcomatosis; NOS", - "Germ cell tumor; NOS", - "Mullerian mixed tumor", - "RAEB II", - "Thymoma; type B1; NOS", - "Intraductal papilloma with lobular carcinoma in situ", - "Transitional meningioma", - "Primary cutaneous CD4-positive small/medium T-cell lymphoma", - "Malignant lymphoma; centroblasticcentrocytic; diffuse", - "Sweat gland adenocarcinoma", - "Verrucous carcinoma; NOS", - "Epithelial tumor; malignant", - "Intraductal tubular-papillary neoplasm; low grade", - "Mucin-secreting adenocarcinoma", - "Transitional papilloma", - "Ameloblastic fibrodentinoma", - "Refractory anemia without sideroblasts", - "Osteochondroma", - "Endometrioid adenoma; borderline malignancy", - "Squamous cell carcinoma; HPV-positive", - "Adenoma; NOS", - "Pleomorphic rhabdomyosarcoma; NOS", - "Epithelial tumor; benign", - "Black adenoma", - "Acute panmyelosis; NOS", - "Synovioma; benign", - "Thymoma; type AB; NOS", - "Rhabdomyosarcoma; NOS", - "Embryonal rhabdomyosarcoma; NOS", - "Aggressive NK-cell leukaemia", - "Infiltrating duct and mucinous carcinoma", - "Inflammatory adenocarcinoma", - "Thymoma; organoid; NOS", - "Endometrial stromal sarcoma; low grade", - "Argentaffinoma; malignant", - "Clear cell cystadenofibroma of borderline malignancy", - "Circumscribed arachnoidal cerebellar sarcoma", - "Myeloid leukemia associated with Down Syndrome", - "Myxosarcoma", - "Gynandroblastoma", - "Histiocyte-rich large B-cell lymphoma", - "Papillary urothelial carcinoma; non-invasive", - "Bronchiolo-alveolar carcinoma; indeterminate type", - "Complex odontoma", - "Pleomorphic cell sarcoma", - "Rhabdomyoma; NOS", - "Malignant lymphoma; undifferentiated cell type; NOS", - "Hodgkin lymphoma; lymphocyte depletion; reticular", - "Neuroendocrine carcinoma; moderately differentiated", - "Hodgkin lymphoma; nodular sclerosis; grade 1", - "Mesenteric fibromatosis", - "Periosteal osteosarcoma", - "PIN III", - "Leydig cell tumor; NOS", - "Soft tissue sarcoma", - "Invasive lobular carcinoma; solid type", - "Subacute lymphocytic leukemia", - "Chromophobe adenocarcinoma", - "Anaplastic oligodendroglioma; IDH-mutant and 1p/19q-codeleted", - "Acinic cell tumor", - "Basal cell carcinoma; NOS", - "Osteoid osteoma; NOS", - "Endometrial stromal nodule", - "Pineoblastoma", - "Chondroid lipoma", - "Juvenile melanoma", - "Hemangioendothelioma; benign", - "Follicular carcinoma; encapsulated", - "NUT carcinoma", - "Cystic hygroma", - "Monoclonal gammopathy of undetermined significance", - "Metaplastic meningioma", - "Unclassified tumor; malignant", - "Chronic lymphatic leukemia", - "Aleukemic lymphoid leukemia", - "Cementifying fibroma", - "Microglioma", - "Meningeal melanoma", - "Adenocarcinoma in situ; mucinous", - "Endometrioid adenofibroma; malignant", - "Prolactinoma", - "Acinic cell adenocarcinoma", - "Angiosarcoma", - "Immunoglobulin deposition disease", - "Infiltrating and papillary adenocarcinoma", - "Melanotic MPNST", - "Acute myeloid leukemia with multilineage dysplasia", - "Diffuse large B-cell lymphoma; NOS", - "Pigmented basal cell carcinoma", - "Atypical meningioma", - "Teratocarcinoma", - "Liver cell adenoma", - "Thymoma; atypical; malignant", - "Pigmented adenoma", - "Oligodendroglioma; IDH-mutant and 1p/19q-codeleted", - "G cell tumor; NOS", - "Squamous papillomatosis", - "Infiltrating duct mixed with other types of carcinoma", - "Cystic mesothelioma; benign", - "Mastocytoma; NOS", - "Endometrioid adenofibroma; NOS", - "Myoma", - "Acute myeloid leukemia with t(6;9)(p23;q34); DEK-NUP214", - "Clear cell adenoma", - "Invasive lobular carcinoma; alveolar type", - "Reninoma", - "Mesonephric tumor; NOS", - "Sex cord-gonadal stromal tumor; mixed forms", - "Endometrioid carcinoma; NOS", - "Lymphangioendothelioma; NOS", - "Papillary carcinoma; encapsulated", - "B lymphoblastic leukemia/lymphoma with t(9;22)(q34;q11.2); BCR-ABL1", - "Vaginal intraepithelial neoplasia; grade III", - "Spindle epithelial tumor with thymus-like element", - "Choriocarcinoma combined with other germ cell elements", - "Thymoma; atypical; NOS", - "Hutchinson melanotic freckle; NOS", - "Botryoid sarcoma", - "Tubular androblastoma with lipid storage", - "Thymoma; medullary; NOS", - "Acute promyelocytic leukaemia; t(15;17)(q22;q11-12)", - "Acute granulocytic leukemia", - "Undifferentiated sarcoma", - "Malignant melanoma in Hutchinson melanotic freckle", - "ECL cell carcinoid; NOS", - "Chorioadenoma", - "Nonlipid reticuloendotheliosis", - "Follicular adenocarcinoma; trabecular", - "Round cell sarcoma", - "Astroglioma", - "Splenic marginal zone lymphoma; NOS", - "Klatskin tumor", - "Thecoma; malignant", - "Cystic mesothelioma; NOS", - "Inflammatory carcinoma", - "Alpha cell tumor; NOS", - "Clear cell odontogenic tumor", - "Sebaceous epithelioma", - "Adenomyoepithelioma with carcinoma", - "Genital rhabdomyoma", - "Malignant tumor; giant cell type", - "Cancer", - "Adrenal cortical carcinoma", - "Angiomatoid fibrous histiocytoma", - "Immature teratoma; malignant", - "Mucoid adenocarcinoma", - "Ependymoma; anaplastic", - "Rhabdoid tumor; NOS", - "Adenocarcinoma in a polyp; NOS", - "Endocervical adenocarcinoma usual type", - "Myloproliferative neoplasm; unclassifiable", - "Tubulolobular carcinoma", - "Carcinoma with productive fibrosis", - "Intraductal papillary-mucinous tumor with low grade dysplasia", - "Epithelioid mesothelioma; NOS", - "Histiocytic medullary reticulosis", - "Acute myeloid leukemia; t(16;16)(p 13;q 11)", - "Esthesioneuroepithelioma", - "Villous adenocarcinoma", - "Acidophil adenoma", - "Eosinophilic granuloma", - "Endometrioid adenocarcinoma; secretory variant", - "Epidermoid carcinoma in situ with questionable stromal invasion", - "Mediterranean lymphoma", - "Glycogen-rich carcinoma", - "Langerhans cell histiocytosis; multifocal", - "Myoepithelioma", - "Solitary myeloma", - "Follicular adenocarcinoma; moderately differentiated", - "Neuroendocrine carcinoma; NOS", - "Melanotic schwannoma", - "Papillary urothelial neoplasm of low malignant potential", - "Infiltrating basal cell carcinoma; sclerosing", - "Intracystic papilloma", - "Mucinous cystadenoma; borderline malignancy", - "Phyllodes tumor; borderline", - "Enterochromaffin-like cell carcinoid; NOS", - "Sertoli-Leydig cell tumor; poorly differentiated", - "Intraductal papillary-mucinous neoplasm with low grade dysplasia", - "Chronic myelomonocytic leukemia; NOS", - "Malignant schwannoma; NOS", - "Conventional central osteosarcoma", - "Refractory anemia with ring sideroblasts associated with marked thrombocytosis", - "Small cell carcinoma; hypercalcemic type", - "Strumal carcinoid", - "Ceruminous carcinoma", - "Skin-associated lymphoid tissue lymphoma", - "Adenocarcinoma; cribriform comedo-type", - "Hypernephroma", - "Endometrioid tumor of low malignant potential", - "Sertoli cell adenoma", - "Alveolar adenoma", - "Acute myeloid leukemia with t(9;11)(p22;q23); MLLT3-MLL", - "Renomedullary fibroma", - "Clear cell hidradenoma", - "Precursor cell lymphoblastic leukemia; NOS", - "Hepatoma; malignant", - "Intraepidermal nevus", - "Ameloblastoma; malignant", - "Infantile fibrosarcoma", - "Pilomatrix carcinoma", - "Refractory thrombocytopenia", - "Primitive polar spongioblastoma", - "Sertoli-Leydig cell tumor of intermediate differentiation", - "Primary cutaneous CD30+ large T-cell lymphoma", - "Mesothelioma; malignant", - "Lymphoma; NOS", - "Intraductal carcinoma; noninfiltrating; NOS", - "Fibroxanthoma; NOS", - "Midline carcinoma of children and young adults with NUT rearrangement", - "Polymorphic post transplant lymphoproliferative disorder", - "Adenocarcinoma in multiple adenomatous polyps", - "Eccrine spiradenoma", - "Mesenchymoma; NOS", - "Squamous cell carcinoma; acantholytic", - "Thymoma; benign", - "Embryonal carcinoma; polyembryonal type", - "Medulloblastoma; NOS", - "Phyllodes tumor; malignant", - "Acinar cell adenoma", - "Gliomatosis cerebri", - "Oligoastrocytoma", - "Neoplasm; NOS", - "Neurilemoma; NOS", - "Periosteal chondroma", - "Endocrine tumor; functioning; NOS", - "Neuroblastoma; NOS", - "Fibromyxosarcoma", - "Glucagonoma; malignant", - "Noninfiltrating intraductal papillary carcinoma", - "Synovial sarcoma; monophasic fibrous", - "Mixed liposarcoma", - "Fibrous meningioma", - "Follicular adenocarcinoma; well differentiated", - "Medulloblastoma; SHH-activated and TP53-wildtype", - "Biliary intraepithelial neoplasia; grade 3", - "Adenocarcinoma in adenomatous polyp", - "Adrenal cortical tumor; NOS", - "Pancreatobiliary neoplasm; non-invasive", - "Paraganglioma; benign", - "Granulosa cell carcinoma", - "Meningeal melanocytoma", - "Pagetoid reticulosis", - "Malignant lymphoma; large cell; cleaved; diffuse", - "Squamous cell papilloma; inverted", - "Atypical proliferating serous tumor", - "Serous adenofibroma; NOS", - "Parafollicular cell carcinoma", - "Intraductal papillary tumor with high grade dysplasia", - "Sex cord-gonadal stromal tumor; NOS", - "Lipid-rich carcinoma", - "Metaplastic carcinoma; NOS", - "Combined small cell-large carcinoma", - "Chromaffin tumor", - "Adenomatoid odontogenic tumor", - "Fetal rhabdomyoma", - "Nodular melanoma", - "Acute lymphoblastic leukemia; mature B-cell type", - "Schneiderian papilloma; NOS", - "Nerve sheath myxoma", - "Enteroglucagonoma; malignant", - "NK-cell large granular lymphocytic leukemia", - "Encapsulated follicular variant of papillary thyroid carcinoma; NOS (EFVPTC; NOS)", - "B lymphoblastic leukemia/lymphoma with hyperdiploidy", - "Leiomyosarcoma; NOS", - "Malignancy", - "Refractory anemia with excess blasts in transformation", - "Sclerosing stromal tumor", - "Precursor B-cell lymphoblastic leukemia", - "Malignant melanoma; regressing", - "Retinoblastoma; NOS", - "Adrenal medullary paraganglioma; malignant", - "Hodgkin paragranuloma; NOS", - "Plasmablastic lymphoma", - "Gastrointestinal stromal tumor; malignant", - "Pulmonary adenomatosis", - "Urachal carcinoma", - "Invasive lobular carcinoma; tubulolobular variant", - "Therapy-related myelodysplastic syndrome; epipodophyllotoxin-related", - "Subepidermal nodular fibrosis", - "Lymphoblastic leukemia; NOS", - "Chordoid glioma", - "Mucinous cystic neoplasm with low-grade dysplasia", - "Anaplastic large cell lymphoma; NOS", - "Struma ovarii and carcinoid", - "Ancient schwannoma", - "Adult rhabdomyoma", - "Endovascular papillary angioendothelioma", - "Aortic body tumor", - "Turban tumor", - "Jugular paraganglioma", - "Angioma; NOS", - "Primary cutaneous DLBCL; leg type", - "Ductal carcinoma in situ; cribriform type", - "Acute progressive histiocytosis X", - "Epithelioma; NOS", - "Mucosal lentiginous melanoma", - "Ameloblastoma; NOS", - "Chronic granulocytic leukemia; NOS", - "Gastrointestinal stromal tumor; uncertain malignant potential", - "Non-lymphocytic leukemia; NOS", - "Acute myeloid leukemia (megakaryoblastic) with t(1;22)(p13;q13); RBM15-MKL1", - "Reticulohistiocytoma", - "Intraductal papillary neoplasm; NOS", - "Melanocytoma; eyeball", - "Pleomorphic lobular carcinoma", - "Ameloblastic carcinoma", - "Diffuse leptomeningeal glioneuronal tumor", - "Intraductal papillary-mucinous carcinoma; invasive", - "Epithelioid glioblastoma", - "Mixed subependymoma-ependymoma", - "Pancreatic endocrine tumor; nonfunctioning", - "Mixed medullary-follicular carcinoma", - "Adenocarcinoma admixed with neuroendocrine carcinoma", - "Metatypical carcinoma", - "Basal cell adenocarcinoma", - "Myxoid fibroma", - "Tumor cells; benign", - "Mixed meningioma", - "Rhabdoid meningioma", - "Glomoid sarcoma", - "Small cell carcinoma pulmonary type", - "Papillary syringocystadenoma", - "Extranodal NK/T-cell lymphoma; nasal type", - "Adenocarcinoma with neuroendocrine differentiation", - "Papillotubular adenoma", - "Lymphangiosarcoma", - "Pilomatricoma; malignant", - "Serous adenofibroma of borderline malignancy", - "Mucinous adenocarcinoma", - "Subependymal glioma", - "Myeloproliferative neoplasm; NOS", - "Carcinoma with other types mesenchymal differentiation", - "Atypical proliferative papillary serous tumor", - "Burkitt-like lymphoma", - "Triton tumor; malignant", - "Intraductal papilloma with ductal carcinoma in situ", - "Leydig cell tumor; malignant", - "Lipoblastomatosis", - "Nephroblastoma; NOS", - "Papillary microcarcinoma", - "Extraventricular neurocytoma", - "Intraductal papillary neoplasm with high grade dysplasia", - "Spindle cell melanoma; NOS", - "T-cell rich/histiocyte-rich large B-cell lymphoma", - "Eosinophil carcinoma", - "Hodgkin lymphoma; lymphocyte depletion; NOS", - "Melanoma; NOS", - "Interstitial cell tumor; malignant", - "Intracanalicular fibroadenoma", - "Papillary syringadenoma", - "Germinoma", - "Microcystic meningioma", - "Fibromyxoma", - "Chromophobe cell renal carcinoma", - "Mixed germ cell sex cord-stromal tumor; unclassified", - "Cementoma; NOS", - "Recklinghausen disease", - "Source Data Not Available", - "Aggressive osteoblastoma", - "Intraductal papillary adenocarcinoma; NOS", - "Carcinoma simplex", - "Meningiomatosis; NOS", - "Esophageal intraepithelial neoplasia; high grade", - "Transient abnormal myelopoiesis", - "Lobular and ductal carcinoma", - "Sclerosing rhabdomyosarcoma", - "unknown", - "Mantle zone lymphoma", - "Codman tumor", - "Lymphangioleiomyomatosis", - "Myeloproliferative disease; NOS", - "Hydroa vacciniforme-like lymphoma", - "Intraductal adenocarcinoma; noninfiltrating; NOS", - "Malignant lymphoma; lymphocytic; NOS", - "Ganglioneuroblastoma", - "Mucinous cystadenofibroma of borderline malignancy", - "Scirrhous carcinoma", - "Condylomatous carcinoma", - "Ameloblastic fibro-odontoma", - "Leiomyoblastoma", - "Nonencapsulated sclerosing adenocarcinoma", - "Acinic cell adenoma", - "Teratoma; malignant; NOS", - "Serous adenocarcinofibroma", - "Squamous cell carcinoma with horn formation", - "Spindled mesothelioma", - "Fibrous astrocytoma", - "Renal cell carcinoma; sarcomatoid", - "Lipoleiomyoma", - "Ganglioneuroma", - "Spindle cell rhabdomyosarcoma", - "Complete hydatidiform mole", - "Squamous intraepithelial neoplasia; grade II", - "Basal cell adenoma", - "Craniopharyngioma; papillary", - "Dermoid cyst; NOS", - "Acute myeloid leukemia with abnormal marrow eosinophils (includes all variants)", - "Chromophobe adenoma", - "Giant cell glioblastoma", - "Angioblastoma", - "Intraosseous low grade osteosarcoma", - "Transitional cell carcinoma", - "Adenomatous polyposis coli", - "Thymoma; cortical; NOS", - "Spindle cell angioendothelioma", - "Astroblastoma", - "Papillary adenofibroma", - "Undifferentiated spindle cell sarcoma", - "Aleukemic myelogenous leukemia", - "Undifferentiated leukaemia", - "Retinoblastoma; differentiated", - "Carcinoid tumor; argentaffin; malignant", - "Erythroleukemia", - "Microcystic adnexal carcinoma", - "Kaposi sarcoma", - "Myxolipoma", - "Mixed medullary-papillary carcinoma", - "Matrical carcinoma", - "Embryonal tumor with rhabdoid features", - "Atypical chronic myeloid leukemia; BCR/ABL negative", - "MGUS", - "Chloroma", - "Clear cell adenofibroma of borderline malignancy", - "Renal cell carcinoma; NOS", - "Supratentorial PNET", - "Meningioma; NOS", - "Infiltrating lipoma", - "Metastasizing leiomyoma", - "Bronchiolo-alveolar carcinoma; non-mucinous", - "Seminoma with high mitotic index", - "Follicular fibroma", - "Follicular dendritic cell sarcoma", - "Non-invasive encapsulated follicular variant of papillary thyroid carcinoma (non-invasive EFVPTC)", - "Partial hydatidiform mole", - "Aggressive angiomyxoma", - "Myxoid liposarcoma", - "Intraductal papillary carcinoma", - "Rosette-forming glioneuronal tumor", - "Esthesioneurocytoma", - "Angiomyosarcoma", - "Langerhans cell granulomatosis", - "Intraductal papillary tumor with high grade intraepithelial neoplasia", - "Bronchiolo-alveolar carcinoma; Clara cell and goblet cell type", - "Mixed tumor; salivary gland type; malignant", - "Eccrine acrospiroma", - "Myelomatosis", - "Soft tissue perineurioma", - "Kaposiform hemangioendothelioma", - "Papillary cystadenoma; borderline malignancy", - "Malignant lymphoma; large B-cell; NOS", - "Basal cell carcinoma; nodular", - "Clear cell adenocarcinoma; mesonephroid", - "Rhabdosarcoma", - "Calcifying odontogenic cyst", - "Franklin disease", - "Adrenal rest tumor", - "Trichofolliculoma", - "Transitional cell papilloma; inverted; benign", - "Pinealoma", - "VIN III", - "Anaplastic astrocytoma; IDH-mutant", - "Papillary carcinoma; follicular variant", - "Water-clear cell adenocarcinoma", - "Interdigitating cell sarcoma", - "Brenner tumor; borderline malignancy", - "Pre-T ALL", - "Adrenal cortical adenoma; pigmented", - "c-ALL", - "Clear cell adenocarcinofibroma", - "Chordoma; NOS", - "Undifferentiated round cell sarcoma", - "Cystic teratoma; NOS", - "Malignant lymphoma; lymphocytic; diffuse; NOS", - "Leiomyofibroma", - "Oncocytic adenocarcinoma", - "Odontogenic tumor; benign", - "Acute biphenotypic leukemia", - "Prolymphocytic leukemia; T-cell type", - "Serotonin producing carcinoid", - "Acute lymphoblastic leukemia-lymphoma; NOS", - "Mucinous cystic tumor with an associated invasive carcinoma", - "Junction nevus", - "Clear cell carcinoma", - "Thymoma; predominantly cortical; NOS", - "Adenocarcinoma in situ in polypoid adenoma", - "Pigmented dermatofibrosarcoma protuberans", - "Sclerosing liposarcoma", - "Osteochondromatosis; NOS", - "Mixed tumor; NOS", - "Differentiated penile intraepithelial neoplasia", - "Low grade adenosquamous carcinoma", - "Malignant mucinous adenofibroma", - "Pancreatic microadenoma", - "Follicular lymphoma; grade 2", - "Adult teratoma; NOS", - "Encapsulated papillary carcinoma", - "Acute myeloid leukemia; PML/RAR-alpha", - "Combined hepatocellular carcinoma and cholangiocarcinoma", - "Intraepidermal squamous cell carcinoma; Bowen type", - "Carcinoma with chondroid differentiation", - "Classical Hodgkin lymphoma; nodular sclerosis; NOS", - "Low-grade fibromyxoid sarcoma", - "Odontogenic tumor; NOS", - "Langerhans cell histiocytosis; poly-ostotic", - "Aortic body paraganglioma", - "Congenital fibrosarcoma", - "Large granular lymphocytosis; NOS", - "Metaplastic carcinoma with osseous differentiation", - "Cellular schwannoma", - "Combined/mixed carcinoid and adenocarcinoma", - "Tubulocystic renal cell carcinoma", - "Teratoid medulloepithelioma; benign", - "Argentaffinoma; NOS", - "Myofibromatosis", - "Acute lymphoid leukemia", - "Epithelioid malignant peripheral nerve sheath tumor", - "Cystoma; NOS", - "Mixed acinar-endocrine carcinoma", - "Anaplastic astrocytoma; IDH-wildtype", - "Intraepithelial carcinoma; NOS", - "Mixed ductal-endocrine carcinoma", - "Desmoplastic small round cell tumor", - "Mixed type rhabdomyosarcoma", - "Clear cell odontogenic carcinoma", - "Papillary serous cystadenoma; borderline malignancy", - "Carcinoid tumor; argentaffin; NOS", - "Malignant lymphoma; lymphocytic; well differentiated; nodular", - "Basophil adenoma", - "Hepatocellular carcinoma; scirrhous", - "Hypereosinophilic syndrome", - "Angiomyoma", - "Malignant melanoma in junctional nevus", - "High-grade neuroendocrine carcinoma", - "Carcinoma with apocrine metaplasia", - "Goblet cell carcinoid", - "Combined carcinoid and adenocarcinoma", - "Epithelioma; benign", - "T-cell rich large B-cell lymphoma", - "Acute myeloid leukemia with mutated CEBPA", - "Adenocystic carcinoma", - "Acute erythroid leukaemia", - "Hepatocellular carcinoma; sarcomatoid", - "Peripheral T-cell lymphoma; pleomorphic medium and large cell", - "Aleukemic lymphatic leukemia", - "Langerhans cell histiocytosis; generalized", - "Thymoma; type A; NOS", - "Lymphatic leukemic; NOS", - "Leptomeningeal sarcoma", - "Infiltrating lobular carcinoma; NOS", - "Oligodendroglioma; anaplastic", - "Papillary hidradenoma", - "Verrucous keratotic hemangioma", - "Angioendothelioma", - "Giant cell fibroblastoma", - "Malignant lymphoma; large cell; cleaved; NOS", - "Flat intraepithelial glandular neoplasia; high grade", - "Odontogenic myxoma", - "DCIS; NOS", - "Tubular carcinoid", - "Nephroma; NOS", - "Papillary glioneuronal tumor", - "Pituitary adenoma; NOS", - "Reticulosarcoma; NOS", - "Brenner tumor; NOS", - "Micropapillary serous carcinoma", - "Adrenal cortical adenoma; compact cell", - "Merkel cell carcinoma", - "Large cell neuroendocrine carcinoma", - "Splenic diffuse red pulp small B-cell lymphoma", - "Fibroblastic liposarcoma", - "Adenoid basal carcinoma", - "Angioleiomyoma", - "Endometrioid cystadenoma; NOS", - "Aleukemic lymphocytic leukemia", - "Adnexal tumor; benign", - "Myofibroblastic tumor; peribronchial", - "Malignant mastocytoma", - "Arrhenoblastoma; NOS", - "Pacinian tumor", - "Epidermoid carcinoma; NOS", - "Follicular carcinoma; moderately differentiated", - "Myelodysplastic syndrome with 5q deletion (5q-) syndrome", - "Pineocytoma", - "Mixed islet cell and exocrine adenocarcinoma", - "Malignant melanoma; NOS", - "Syringocystadenoma papilliferum", - "Solid teratoma", - "Anaplastic pleomorphic xanthroastrocytoma", - "Malignant mast cell tumor", - "Alveolar rhabdomyosarcoma", - "Squamous intraepithelial neoplasia; grade III", - "Pineal parenchymal tumor of intermediate differentiation", - "Carcinoma; intestinal type", - "Tumor cells; NOS", - "Lymphangioma; NOS", - "Odontogenic tumor; malignant", - "MALT lymphoma", - "Mucinous adenocarcinofibroma", - "Traditional sessile serrated adenoma", - "Endometrioid adenoma; NOS", - "Sweat gland adenoma", - "BALT lymphoma", - "Dermatofibrosarcoma; NOS", - "Lipoma; NOS", - "Mucinous cystadenocarcinoma; NOS", - "Papillary carcinoma; columnar cell", - "CNS Embryonal tumor with rhabdoid features", - "Fascial fibroma", - "Odontoma; NOS", - "Minimally invasive adenocarcinoma; non-mucinous", - "Syncytial meningioma", - "Neurinoma", - "Mixed teratoma and seminoma", - "Phyllodes tumor; benign", - "Undifferentiated pleomorphic sarcoma", - "Apocrine adenoma", - "Periapical cemental dysplasia", - "Choroid plexus papilloma; NOS", - "Fibroliposarcoma", - "Malignant lymphoma; large cleaved cell; NOS", - "Vulvar intraepithelial neoplasia; grade III", - "Essential thrombocythemia", - "Colloid adenoma", - "Serous surface papillary tumor of borderline malignancy", - "FAB M4", - "Teratoma with malignant transformation", - "Sebaceous adenoma", - "Adamantinoma; malignant", - "Common ALL", - "Squamous intraepithelial neoplasia; low grade", - "Squamous cell carcinoma in situ with questionable stromal invasion", - "Synovial sarcoma; spindle cell", - "Mucoid cell adenoma", - "Pleuropulmonary blastoma", - "Pigmented nevus; NOS", - "Synovial sarcoma; epithelioid cell", - "B-cell lymphocytic leukemia/small lymphocytic lymphoma", - "Villous papilloma", - "Chronic myeloproliferative disorder", - "Enteropathy type intestinal T-cell lymphoma", - "Hepatoid adenocarcinoma", - "Malignant lymphoma; small noncleaved; Burkitt type", - "Papilloma; NOS", - "Urothelial carcinoma with divergent differentiation", - "Warty carcinoma", - "Adenoacanthoma", - "Primary amyloidosis", - "Classical Hodgkin lymphoma; nodular sclerosis; grade 2", - "Leiomyoma; NOS", - "Chronic myelomonocytic leukemia; Type II", - "Spindle cell oncocytoma", - "Germ cell tumors with associated hematological malignancy", - "Carcinoma; anaplastic; NOS", - "B lymphoblastic leukemia/lymphoma with t(v;11q23); MLL rearranged", - "Islet cell carcinoma", - "Mesodermal mixed tumor", - "Splenic B-cell lymphoma/leukemia; unclassifiable", - "Chronic monocytic leukemia", - "Medulloblastoma; classic", - "Pneumoblastoma", - "Sebaceous adenocarcinoma", - "Idiopathic thrombocythemia", - "Olfactory neuroblastoma", - "Pulmonary blastoma", - "Malignant tumor; small cell type", - "Intratubular germ cell neoplasia", - "Dermoid cyst with secondary tumor", - "Neoplasm; uncertain whether benign or malignant", - "Dermal nevus", - "Neurotropic melanoma; malignant", - "Adrenal cortical adenoma; mixed cell", - "Meningeal sarcoma", - "Chordoid glioma of third ventricle", - "Intracortical osteosarcoma", - "Sclerosing sweat duct carcinoma", - "Serous adenocarcinoma; NOS", - "Mixed pancreatic endocrine and exocrine tumor; malignant", - "Adenocarcinoma combined with other types of carcinoma", - "Adenolymphoma", - "Sympathicoblastoma", - "Gonocytoma", - "Lymphangioendothelial sarcoma", - "Schneiderian carcinoma", - "Squamous carcinoma", - "Myofibroma", - "Epidermoid carcinoma; spindle cell", - "Squamous cell carcinoma; metastatic; NOS", - "Hodgkin lymphoma; nodular sclerosis; grade 2", - "Cutaneous T-cell lymphoma; NOS", - "Transitional cell carcinoma; micropapillary", - "Ewing tumor", - "Intraductal papillomatosis; NOS", - "Invasive hydatidiform mole", - "Ductal carcinoma in situ; comedo type", - "Lipoid cell tumor of ovary", - "Pilomatrixoma; malignant", - "Syringadenoma; NOS", - "Urothelial carcinoma with squamous differentiation", - "Medulloblastoma with extensive nodularity", - "Chronic lymphocytic leukemia; B-cell type (includes all variants of BCLL)", - "Serous surface papillary carcinoma", - "Pigmented schwannoma", - "Juxtacortical chondrosarcoma", - "Mucin-producing carcinoma", - "SALT lymphoma", - "Epithelioid hemangioma", - "Mixed adenoneuroendocrine carcinoma", - "Adenocarcinoma in polypoid adenoma", - "Adrenal medullary paraganglioma", - "Retinoblastoma; undifferentiated", - "Diffuse astrocytoma; IDH-wildtype", - "Chronic lymphoid leukemia", - "Indolent systemic mastocytosis", - "Squamous cell carcinoma; clear cell type", - "Papillary transitional cell carcinoma; non-invasive", - "Vascular leiomyoma", - "Myeloid neoplasms with PDGFRB rearrangement", - "Carcinoid tumor of uncertain malignant potential", - "Indeterminate dendritic cell tumor", - "Neurolipocytoma", - "Squamous cell carcinoma; sarcomatoid", - "Papillary urothelial carcinoma", - "Fibrillary astrocytoma", - "Clear cell cystadenoma", - "Extra-adrenal paraganglioma; NOS", - "Malignant mastocytosis", - "Cylindroma of skin", - "Malignant lymphoma; small cell diffuse", - "Chronic lymphocytic leukemia", - "Pheochromoblastoma", - "Adenocarcinoma in situ; non-mucinous", - "Stromal sarcoma; NOS", - "Ecchondrosis", - "Ectopic hamartomatous thymoma", - "Spongioblastoma polare", - "Tumor cells; malignant", - "Basal cell carcinoma; morpheic", - "Papillary carcinoma; oxyphilic cell", - "Clear cell sarcoma; of tendons and aponeuroses", - "Bronchiolo-alveolar carcinoma; goblet cell type", - "Oligodendroblastoma", - "Interstitial cell tumor; benign", - "Neuroma; NOS", - "Nonpigmented nevus", - "Cystadenocarcinoma; NOS", - "Adenocarcinoma with cartilaginous and osseous metaplasia", - "Papillary neoplasm; pancreatobiliary-type; with high grade intraepithelial neoplasia", - "Subependymoma", - "Adenocarcinoma with mixed subtypes", - "Trichilemmoma", - "Malignant cystic nephroma", - "Follicular lymphoma; grade 3", - "Glandular intraepithelial neoplasia; low grade", - "Intratubular malignant germ cells", - "Retroperitoneal fibromatosis", - "Myeloid leukemia; NOS", - "Leukemia; NOS", - "Fibrochondrosarcoma", - "Spindle cell melanoma; type A", - "Histiocytoid hemangioma", - "Mucinous cystic neoplasm with low-grade intraepithelial neoplasia", - "Malignant lymphoma; convoluted cell", - "Squamous cell carcinoma in situ; NOS", - "Granular cell carcinoma", - "Choriocarcinoma combined with embryonal carcinoma", - "Hodgkin disease; nodular sclerosis; lymphocyte predominance", - "Basophil carcinoma", - "Carcinoma; diffuse type", - "Ossifying renal tumor", - "Ganglioneuromatosis", - "Carcinoma; metastatic; NOS", - "Malignant lymphoma; mixed cell type; nodular", - "Round cell carcinoma", - "Apudoma", - "Malignant lymphoma; large cell; NOS", - "Acinar adenoma", - "Cellular angiofibroma", - "Adenocarcinoma in situ in tubular adenoma", - "Acute monoblastic and monocytic leukemia", - "Neuroepithelioma; NOS", - "Bronchio-alveolar carcinoma; mixed mucinous and non-mucinous", - "Intracystic papillary neoplasm with high grade intraepithelial neoplasia", - "Hepatoblastoma", - "Papillary serous adenocarcinoma", - "Angiolipoma; NOS", - "Systemic tissue mast cell disease", - "Chondrosarcoma; NOS", - "PPNET", - "Dentinoma", - "Bizarre leiomyoma", - "Splenic marginal zone B-cell lymphoma", - "Lepidic predominant adenocarcinoma", - "Fibroepithelial basal cell carcinoma; Pinkus type", - "Subependymal giant cell astrocytoma", - "Serous microcystic adenoma", - "Hepatocarcinoma", - "Dendritic cell sarcoma; NOS", - "Adenocarcinoma; endocervical type", - "RAEB", - "Medulloblastoma; group 3", - "Refractory cytopenia with multilineage dysplasia", - "Cystosarcoma phyllodes; NOS", - "Acute promyelocytic leukemia; NOS", - "Epithelial ependymoma", - "Hurthle cell adenocarcinoma", - "Embryonal rhabdomyosarcoma; pleomorphic", - "Adenolipoma", - "Malignant multilocular cystic nephroma", - "Hydatid mole", - "Immunocytoma", - "Thymoma; mixed type; malignant", - "Myeloid and lymphoid neoplasms with PDGFRA rearrangement", - "Unclassified tumor; borderline malignancy", - "Endometrioid adenocarcinoma; ciliated cell variant", - "Mucinous cystic tumor with moderate dysplasia", - "Atypical proliferative endometrioid tumor", - "Eosinophilic leukemia", - "Medullary carcinoma with amyloid stroma", - "Metanephric adenoma", - "Fetal lipoma; NOS", - "Hemangiopericytoma; benign", - "Acute panmyelosis with myelofibrosis", - "Astrocytoma; NOS", - "Trabecular adenoma", - "Malignant tumor; spindle cell type", - "Anaplastic large cell lymphoma; CD30+", - "Duct carcinoma; NOS", - "Insulinoma; NOS", - "Hodgkin disease; nodular sclerosis; NOS", - "Malignant lymphoma; large cell; diffuse; NOS", - "Mullerian adenosarcoma", - "Myelolipoma", - "Myeloma; NOS", - "Hodgkin disease; NOS", - "Diffuse astrocytoma; IDH-mutant", - "Endometrioid adenocarcinoma; villoglandular", - "Infiltrating basal cell carcinoma; NOS", - "Glomangiomyoma", - "Mature teratoma", - "Mucinous cystic tumor with low grade dysplasia", - "Astrocytic glioma", - "Liposarcoma; differentiated", - "Plasmacytic lymphoma", - "Pre-B ALL", - "Hepatosplenic T-cell lymphoma", - "Medullocytoma", - "Acute myeloid leukemia with t(8;21)(q22;q22); RUNX1-RUNX1T1", - "Melanocytoma; NOS", - "Papillary carcinoma in situ", - "Spongioneuroblastoma", - "Intraductal and lobular carcinoma", - "Malignant teratoma; anaplastic", - "Therapy related myeloid neoplasm", - "Astrocytoma; anaplastic", - "Malignant lymphoma; diffuse; NOS", - "Malignant giant cell tumor of soft parts", - "Pancreatic peptide and pancreatic peptide-like peptide within terminal tyrosine amide producing tumor", - "Steroid cell tumor; NOS", - "Serous cystadenocarcinoma; NOS", - "Multicystic mesothelioma; benign", - "Sex cord tumor; NOS", - "Stromal endometriosis", - "Sertoli-Leydig cell tumor; retiform; with heterologous elements", - "Mature T ALL", - "Adenocarcinoma of anal glands", - "Papillary squamous cell carcinoma", - "FAB M5 (includes all variants)", - "Subacute myeloid leukemia", - "Papillary adenocarcinoma; NOS", - "Histiocytoma; NOS", - "Somatostatin cell tumor; malignant", - "Thymoma; type B1; malignant", - "Cholangiocarcinoma", - "Insular carcinoma", - "Papillary pseudomucinous cystadenoma; borderline malignancy", - "Mesenchymal tumor; malignant", - "Seminoma; anaplastic", - "Intracystic papillary neoplasm with intermediate grade intraepithelial neoplasia", - "MPNST with mesenchymal differentiation", - "Intramuscular lipoma", - "Lymphomatoid granulomatosis", - "Acinar cell cystadenocarcinoma", - "Acinar adenocarcinoma", - "Schwannoma; NOS", - "Grawitz tumor", - "Papillary mucinous tumor of low malignant potential", - "Multiple myeloma", - "Hodgkin lymphoma; nodular sclerosis; cellular phase", - "Lipoma-like liposarcoma", - "Perineurioma; NOS", - "Mucinous cystadenofibroma; NOS", - "Biphenotypic sinonasal sarcoma", - "Dysgerminoma", - "Mucin-producing adenocarcinoma", - "Alpha cell tumor; malignant", - "Medullary carcinoma with lymphoid stroma", - "Comedocarcinoma; noninfiltrating", - "Follicular thyroid carcinoma (FTC); encapsulated angioinvasive", - "Haemangioblastoma", - "Squamous cell carcinoma; spindle cell", - "EBV positive diffuse large B-cell lymphoma of the elderly", - "Plasmacytic leukemia", - "Malignant lymphoma; large B-cell; diffuse; NOS", - "Central primitive neuroectodermal tumor; NOS", - "Malignant lymphoma; centroblastic; NOS", - "Refractory anemia with ringed sideroblasts", - "Squamous intraepithelial neoplasia; high grade", - "Ameloblastic fibrodentinosarcoma", - "Thymoma; lymphocytic; NOS", - "Malignant lymphoma; lymphocytic; nodular; NOS", - "Malignant melanoma in congenital melanocytic nevus", - "Classical Hodgkin lymphoma; nodular sclerosis; grade 1", - "Mixed adenocarcinoma and squamous cell carcinoma", - "Non-Hodgkin lymphoma; NOS", - "Mesenchymal chondrosarcoma", - "Ductal carcinoma in situ; NOS", - "Blastic NK cell lymphoma", - "Extra-adrenal paraganglioma; malignant", - "Dysembryoplastic neuroepithelial tumor", - "Mucinous carcinoma; intestinal type", - "Thymoma; mixed type; NOS", - "Tumorlet; benign", - "Bronchiolo-alveolar carcinoma; type II pneumocyte", - "Extracutaneous mastocytoma", - "Mucinous cystic neoplasm with intermediate-grade intraepithelial neoplasia", - "Invasive mammary carcinoma", - "CASTLE", - "Epidermoid carcinoma; keratinizing", - "Essential hemorrhagic thrombocythaemia", - "Osteofibrosarcoma", - "Desmoplastic fibroma", - "Glioblastoma", - "Thymoma; lymphocyte-rich; NOS", - "Intravascular large B-cell lymphoma", - "Epithelioid hemangioendothelioma; NOS", - "Glioblastoma; IDH wildtype", - "Periosteal sarcoma; NOS", - "Unclassified tumor; malignant; uncertain whether primary or metastatic", - "Mucinous cystic neoplasm with intermediate-grade dysplasia", - "SETTLE", - "Acinar cell tumor", - "Pancreatic endocrine tumor; malignant", - "Nodular hidradenoma", - "Dedifferentiated chondrosarcoma", - "Gelatinous adenocarcinoma", - "T-gamma lymphoproliferative disease", - "Malignant peripheral nerve sheath tumor", - "Nonencapsulated sclerosing carcinoma", - "Xanthofibroma", - "Endodermal sinus tumor", - "Choroid plexus papilloma; anaplastic", - "Desmoplastic mesothelioma", - "Protoplasmic astrocytoma", - "Neurogenic sarcoma", - "Noninfiltrating intracystic carcinoma", - "Low-grade intramedullary osteosarcoma", - "Granulocytic leukemia; NOS", - "Tumor; secondary", - "Thymoma; type AB; malignant", - "Acute myeloid leukemia; CBF-beta/MYH11", - "Juvenile astrocytoma", - "Alveolar carcinoma", - "Adenoameloblastoma", - "Polypoid adenoma", - "Porocarcinoma", - "Mixed pineocytoma-pineoblastoma", - "Large cell carcinoma with rhabdoid phenotype", - "Compound odontoma", - "Subacute monocytic leukemia", - "Hemangioendothelioma; malignant", - "Mucoid carcinoma", - "Odontogenic carcinosarcoma", - "Extra-abdominal desmoid", - "Retinal anlage tumor", - "Osteoblastoma; NOS", - "Unclassified tumor; uncertain whether benign or malignant", - "Giant cell tumor of soft parts; NOS", - "Non-invasive EFVPTC", - "Solitary fibrous tumor; malignant", - "Hodgkin paragranuloma; nodular", - "Hurthle cell tumor", - "Clear cell adenocarcinoma; NOS", - "Myelodysplastic syndrome; unclassifiable", - "Gelatinous carcinoma", - "Primary myelofibrosis", - "Malignant lymphoma; immunoblastic; NOS", - "Malignant lymphoma; small cleaved cell; NOS", - "Carcinoid tumor; NOS", - "Nodular hidradenoma; malignant", - "Odontogenic carcinoma", - "Adenocarcinoma with osseous metaplasia", - "MPNST; NOS", - "Hurthle cell adenoma", - "Lentigo maligna melanoma", - "Sessile serrated adenoma", - "Intraductal carcinoma; NOS", - "Mast cell leukaemia", - "Malignant mucinous cystadenofibroma", - "Paget disease of breast", - "Gastrointestinal stromal sarcoma", - "Adamantinoma of long bones", - "Mucinous cystic neoplasm with high-grade dysplasia", - "Basaloid carcinoma", - "FAB M3 (includes all variants)", - "Endometrioid cystadenofibroma; borderline malignancy", - "Atypical follicular adenoma", - "Myxoinflammatory fibroblastic sarcoma (MIFS)", - "Pinkus tumor", - "Proliferative dermal lesion in congenital nevus", - "Liver cell carcinoma", - "Hemangiopericytoma; NOS", - "Gigantiform cementoma", - "Adenocarcinoma; intestinal type", - "Retinoblastoma; diffuse", - "Primary effusion lymphoma", - "Pancreatoblastoma", - "Systemic light chain disease", - "Acute lymphoblastic leukemia; L2 type; NOS", - "Medulloblastoma; group 4", - "Bile duct cystadenocarcinoma", - "Perivascular epithelioid cell tumor; malignant", - "Luteinoma", - "Deep histiocytoma", - "Juvenile histiocytoma", - "Polygonal cell carcinoma", - "Thymic large B-cell lymphoma", - "Histiocytic sarcoma", - "Capillary lymphangioma", - "Endometrioid cystadenocarcinoma", - "Cystic hypersecretory carcinoma", - "Hand-Schuller-Christian disease", - "Lymphangioendothelioma; malignant", - "Fibroameloblastic odontoma", - "Giant cell tumor of bone; NOS", - "Acute myelosclerosis; NOS", - "Hodgkin disease; nodular sclerosis; syncytial variant", - "Pilocytic astrocytoma", - "Adenosquamous carcinoma", - "DIN 3", - "Parietal cell carcinoma", - "Rodent ulcer", - "Therapy-related myelodysplastic syndrome; NOS", - "Adenocarcinoma in situ; NOS", - "Dermatofibrosarcoma protuberans; NOS", - "Adenocarcinoma in tubolovillous adenoma", - "Parachordoma", - "Adrenal cortical adenoma; NOS", - "Colloid adenocarcinoma", - "Neuroendocrine carcinoma; poorly differentiated", - "Thymoma; medullary; malignant", - "Plasma cell tumor", - "Malignant lymphoma; mixed lymphocytic-histiocytic; nodular", - "Sinonasal papilloma; fungiform", - "Carcinoid; NOS; of appendix", - "Primary cutaneous CD30+ T-cell lymphoproliferative disorder", - "Papillary carcinoma; diffuse sclerosing", - "Tubular adenoma; NOS", - "Neoplasm; metastatic", - "Anal intraepithelial neoplasia; grade III", - "Tenosynovial giant cell tumor", - "Chronic myeloid leukemia; NOS", - "Hepatoma; NOS", - "Hypernephroid tumor", - "Mucinous cystoma", - "Plexiform hemangioma", - "Mixed adenocarcinoma and epidermoid carcinoma", - "Spindle cell hemangioendothelioma", - "FAB L2", - "Infiltrating duct and colloid carcinoma", - "Mixed embryonal carcinoma and teratoma", - "Epithelial-myoepithelial carcinoma", - "Peripheral primitive neuroectodermal tumor; NOS", - "Primary cutaneous neuroendocrine carcinoma", - "M6A", - "Polycythemia rubra vera", - "Anaplastic large B-cell lymphoma", - "Aggressive systemic mastocytosis", - "Nephrogenic adenofibroma", - "Fibrous mesothelioma; malignant", - "Mucocarcinoid tumor", - "FAB Ll", - "Ganglioglioma; NOS", - "Familial polyposis coli", - "GIST; malignant", - "Kupffer cell sarcoma", - "Sezary syndrome", - "Sarcoma botryoides", - "Adenocarcinoma; diffuse type", - "Columnar cell papilloma", - "Megakaryocytic leukemia", - "Solid papillary carcinoma in situ", - "Adenocarcinoma in situ in a polyp; NOS", - "Hygroma; NOS", - "Undifferentiated epithelioid sarcoma", - "Plexiform fibromyxoma", - "Spitz nevus", - "Chronic myelocytic leukemia; NOS", - "Endometrioid cystadenoma; borderline malignancy", - "Thymoma; type B3; NOS", - "Granulosa cell tumor; NOS", - "Giant cell sarcoma of bone", - "Malignant lymphoma; follicle center; follicular", - "Acute non-lymphocytic leukemia", - "Juxtacortical chondroma", - "Endocrine adenomatosis", - "Mucous adenocarcinoma", - "Renal carcinoma; collecting duct type", - "Angioblastic meningioma", - "Odontogenic fibroma; NOS", - "Granulosa cell tumor; malignant", - "Bronchiolo-alveolar carcinoma; type II pneumocyte and goblet cell type", - "Ganglioglioma; anaplastic", - "Mixed acinar-ductal carcinoma", - "Clear cell sarcoma; NOS", - "CPNET", - "Atypical leiomyoma", - "Apocrine cystadenoma", - "Chromophobe carcinoma", - "Thymoma; NOS", - "Chondroma; NOS", - "Abdominal fibromatosis", - "AML M6", - "Giant fibroadenoma", - "Combined small cell carcinoma", - "Epithelioid mesothelioma; malignant", - "Theca cell tumor", - "Basaloid squamous cell carcinoma", - "Lipoblastoma", - "Dermoid; NOS", - "Bronchiolar adenocarcinoma", - "ACTH-producing tumor", - "Lentigo maligna", - "Small cell carcinoma; intermediate cell", - "Epithelioid cell melanoma", - "Cystosarcoma phyllodes; malignant", - "Thecoma; luteinized", - "Beta cell tumor; malignant", - "Thymoma; predominantly cortical; malignant", - "Acute myeloid leukemia; NOS", - "Atypical teratoid/rhabdoid tumor", - "B lymphoblastic leukemia/lymphoma; NOS", - "Subacute lymphatic leukemia", - "Teratoma; NOS", - "C cell carcinoma", - "Hereditary leiomyomatosis & RCC-associated renal cell carcinoma", - "Intimal sarcoma", - "Peripheral T-cell lymphoma; pleomorphic small cell", - "Superficial spreading melanoma", - "Intracystic papillary neoplasm with low grade intraepithelial neoplasia", - "Refractory neutropenia", - "Secondary carcinoma", - "Malignant lymphoma; lymphoplasmacytic", - "Urothelial carcinoma in situ", - "Invasive micropapillary carcinoma", - "FAB M2; NOS", - "Leydig cell tumor; benign", - "Basal cell carcinoma; fibroepithelial", - "Neurilemosarcoma", - "Myosarcoma", - "Intraductal papillary mucinous neoplasm (IPMN) with an associated invasive carcinoma", - "Chondrosarcoma grade 2/3", - "Sertoli-Leydig cell tumor; intermediate differentiation; with heterologous elements", - "Atypical choroid plexus papilloma", - "Myxoma; NOS", - "Askin tumor", - "Multifocal superficial basal cell carcinoma", - "Fibrous mesothelioma; benign", - "Fibroepithelioma; NOS", - "Malignant serous cystadenofibroma", - "Papillotubular adenocarcinoma", - "Tubular androblastoma; NOS", - "Brenner tumor; proliferating", - "Rhabdoid sarcoma", - "Pleomorphic xanthoastrocytoma", - "Testicular adenoma", - "Multiple hemorrhagic sarcoma", - "Follicular lymphoma; small cleaved cell", - "Salivary duct carcinoma", - "Intraductal papillary neoplasm with low grade intraepithelial neoplasia", - "Diffuse intraductal papillomatosis", - "Enterochromaffin cell carcinoid", - "Vipoma; NOS", - "Serous cystadenofibroma; NOS", - "Flat intraepithelial neoplasia; high grade", - "Giant pigmented nevus; NOS", - "Perifollicular fibroma", - "Leukemic reticuloendotheliosis", - "Mucin-secreting carcinoma", - "Congenital peribronchial myofibroblastic tumor", - "Acquired tufted hemangioma", - "Bronchiolo-alveolar carcinoma; Clara cell", - "Enchondroma", - "Classical Hodgkin lymphoma; lymphocyte depletion; NOS", - "Primary intraosseous carcinoma", - "Glomus jugulare tumor; NOS", - "Cyst-associated renal cell carcinoma", - "Epithelioid cell sarcoma", - "Monocytic leukemia; NOS", - "Lipoadenoma", - "Canalicular adenoma", - "Infiltrating lobular mixed with other types of carcinoma", - "Involuting nevus", - "Micropapillary carcinoma; NOS", - "Clear cell (glycogen-rich) urothelial carcinoma", - "Neurothekeoma", - "FAB M2; AML1(CBF-alpha)/ETO", - "Intracystic papillary adenocarcinoma", - "Alpha heavy chain disease", - "Eccrine poroma", - "Somatostatinoma; malignant", - "Granular cell tumor of the sellar region", - "Tubulo-papillary adenoma", - "Precursor T-cell lymphoblastic lymphoma", - "Primary cutaneous anaplastic large cell lymphoma", - "Hodgkin disease; lymphocytic-histiocytic predominance", - "Transitional cell papilloma; benign", - "Carcinoma; undifferentiated; NOS", - "Chronic neutrophilic leukemia", - "Perineurioma; malignant", - "Blue nevus; NOS", - "Infiltrating duct and tubular carcinoma", - "Thymoma; organoid; malignant", - "Dabska tumor", - "Stromal tumor; benign", - "Pituitary carcinoma; NOS", - "Hodgkin lymphoma; nodular lymphocyte predominance", - "Arrhenoblastoma; benign", - "Subareolar duct papillomatosis", - "Intraglandular papillary neoplasm with low grade intraepithelial neoplasia", - "Lymphoplasmacyte-rich meningioma", - "Placental site trophoblastic tumor", - "Adenomatosis; NOS", - "Mixed phenotype acute leukemia with t(v;11q23); MLL rearranged", - "Multiple endocrine adenomas", - "Melanotic medulloblastoma", - "Sex cord-gonadal stromal tumor; incompletely differentiated", - "Lobular carcinoma; noninfiltrating", - "Peripheral T-cell lymphoma; NOS", - "Angiomyxoma", - "Juvenile fibroadenoma", - "Mesonephric adenocarcinoma", - "Juvenile nevus", - "Psammomatous schwannoma", - "Malignant lymphoma; large cell; follicular; NOS", - "Squamous cell carcinoma; HPV-negative", - "Fibrosarcoma; NOS", - "Cholangioma", - "Giant cell and spindle cell carcinoma", - "Angioimmunoblastic lymphadenopathy", - "Basophil adenocarcinoma", - "Intracystic carcinoma; NOS", - "Malignant lymphoma; small cell; NOS", - "Plasmacytoma; extramedullary", - "Ameloblastic sarcoma", - "Retinocytoma", - "Giant osteoid osteoma", - "Esophageal glandular dysplasia (intraepithelial neoplasia); low grade", - "Cervical intraepithelial neoplasia; low grade", - "Odontoameloblastoma", - "DCIS; papillary", - "Apocrine adenocarcinoma", - "Malignant melanoma in giant pigmented nevus", - "Diffuse meningiomatosis", - "Trichoepithelioma", - "Medullary adenocarcinoma", - "Mucinous carcinoma", - "Noninvasive pancreatobiliary papillary neoplasm with high grade intraepithelial neoplasia", - "Polyvesicular vitelline tumor", - "Malignant lymphoma; centroblasticcentrocytic; follicular", - "Malignant lymphoma; histiocytic; diffuse", - "Differentiated-type vulvar intraepithelial neoplasia", - "Malignant teratoma; intermediate", - "Schmincke tumor", - "Squamous cell carcinoma; microinvasive", - "Refractory cytopenia of childhood", - "Melanoma; malignant; of soft parts", - "Intraductal papillary-mucinous neoplasm with moderate dysplasia", - "Endotheliomatous meningioma", - "Mesonephroma; benign", - "Mixed tumor; salivary gland type; NOS", - "Adenocarcinoid tumor", - "Hemangioma simplex", - "Fibroxanthoma; malignant", - "Cystic partially differentiated nephroblastoma", - "Granular cell tumor; malignant", - "Subependymal astrocytoma; NOS", - "Papillocystic adenocarcinoma", - "Anaplastic large cell lymphoma; ALK positive", - "Acute myeloid leukemia without prior myelodysplastic syndrome", - "Gastrointestinal autonomic nerve tumor", - "Bile duct carcinoma", - "Sclerosing epithelioid fibrosarcoma", - "Infiltrating basal cell carcinoma; non-sclerosing", - "Mixed germ cell tumor", - "Polyembryoma", - "Myelofibrosis with myeloid metaplasia", - "Mucinous cystic tumor with intermediate dysplasia", - "Intracystic papillary adenoma", - "Malignant lymphoma; non-cleaved cell; NOS", - "Malignant lymphoma; small cleaved cell; diffuse", - "Hairy cell leukemia", - "Subcutaneous panniculitis-like T-cell lymphoma", - "Choriocarcinoma combined with teratorna", - "Hodgkin sarcoma", - "Chondromyxoid fibroma", - "ECL cell carcinoid; malignant", - "Papillary cystadenocarcinoma; NOS", - "Acinar carcinoma", - "Marginal zone B-cell lymphoma; NOS", - "Gamma heavy chain disease", - "Acute lymphoblastic leukemia; precursor cell type", - "Embryonal tumor with multilayered rosettes; NOS", - "Fascial fibrosarcoma", - "Steroid cell tumor; malignant", - "Chemodectoma", - "Fibroma; NOS", - "Tanycytic ependymoma", - "Heavy chain disease; NOS", - "High grade surface osteosarcoma", - "Biliary intraepithelial neoplasia; low grade", - "Tubulopapillary adenocarcinoma", - "Pilomatricoma; NOS", - "Eosinophil adenocarcinoma", - "Fetal fat cell lipoma", - "True histiocytic lymphoma", - "EC cell carcinoid", - "Gonadoblastoma", - "Pericanalicular fibroadenoma", - "Mammary carcinoma; in situ", - "Reticulum cell sarcoma; diffuse", - "Ependymoma; NOS", - "Papillary carcinoma; NOS", - "Teratoma; benign", - "Atypical medullary carcinoma", - "PP/PYY producing tumor", - "Hodgkin disease; nodular sclerosis; mixed cellularity", - "Blastic plasmacytoid dendritic cell neoplasm", - "Infantile hemangioma", - "Alveolar adenocarcinoma", - "Carcinosarcoma; NOS", - "PTLD; NOS", - "Pleomorphic leiomyoma", - "Pseudomyxoma peritonei", - "Malignant lymphoma; centrocytic", - "Hydatidiform mole; NOS", - "Malignant eccrine spiradenoma", - "Hepatoblastoma; epithelioid", - "Acute myeloid leukaemia; t(8;21)(q22;q22)", - "Infiltrating duct adenocarcinoma", - "Osteogenic sarcoma; NOS", - "Monstrocellular sarcoma", - "Malignant lymphoma; mixed small cleaved and large cell; follicular", - "Islet cell adenoma", - "Periosteal fibrosarcoma", - "Thymoma; epithelial; NOS", - "Invasive encapsulated follicular variant of papillary thyroid carcinoma (invasive EFVPTC)", - "Congenital generalized fibromatosis", - "Malignant lymphoma; centroblasticcentrocytic; NOS", - "Diktyoma; benign", - "Ductal intraepithelial neoplasia 3", - "Granulosa cell tumor; sarcomatoid", - "Odontogenic fibrosarcoma", - "Adenocarcinoma of anal ducts", - "Chronic myelogenous leukemia; t(9;22)(q34;q11)", - "Embryonal hepatoma", - "Sinonasal papilloma; NOS", - "Epidermoid carcinoma in situ; NOS", - "Pulmonary artery intimal sarcoma", - "Mixed embryonal rhabdomyosarcoma and alveolar rhabdomyosarcoma", - "Primary serous papillary carcinoma of peritoneum", - "Mucinous cystic neoplasm with an associated invasive carcinoma", - "Neurosarcoma", - "Hepatoid yolk sac tumor", - "Small congenital nevus", - "Chronic granulocytic leukemia; BCR/ABL", - "Lobular carcinoma in situ; NOS", - "Myelogenous leukemia; NOS", - "Hodgkin lymphoma; mixed cellularity; NOS", - "Acute leukemia; NOS", - "Balloon cell nevus", - "Mixed acidophil-basophil carcinoma", - "Fibromyoma", - "Diffuse astrocytoma; low grade", - "Cin III; NOS", - "Parasympathetic paraganglioma", - "Granular cell adenocarcinoma", - "Adult T-cell leukemia", - "Mixed acinar-endocrine-ductal carcinoma", - "Mixed carcinoid-adenocarcinoma", - "Nonchromaffin paraganglioma; NOS", - "Biliary intraepithelial neoplasia; high grade", - "Acute monoblastic leukemia", - "Desmoplastic melanoma; malignant", - "Transitional cell papilloma; NOS", - "Hemolymphangioma", - "NK/T-cell lymphoma; nasal and nasal-type", - "Diktyoma; malignant", - "Cloacogenic carcinoma", - "Metaplastic carcinoma with other types mesenchymal differentiation", - "Microfollicular adenoma; NOS", - "Acquired cystic disease-associated renal cell carcinoma (RCC)", - "Malignant reticulosis; NOS", - "Embryonal adenoma", - "Chronic myelomonocytic leukemia in transformation", - "Monoblastic leukemia; NOS", - "Cystic astrocytoma", - "Adenocarcinoma in tubular adenoma", - "Terminal duct adenocarcinoma", - "Angiokeratoma", - "Mucosal-associated lymphoid tissue lymphoma", - "Fibroblastic osteosarcoma", - "Hodgkin disease; nodular sclerosis; lymphocyte depletion", - "Systemic EBV positive T-cell lymphoproliferative disease of childhood", - "Chondroid chordoma", - "Chorionepithelioma", - "Brenner tumor; malignant", - "Epidermoid carcinoma; large cell; nonkeratinizing", - "Neoplasm; secondary", - "Mixed invasive mucinous and non-mucinous adenocarcinoma", - "Malignant lymphoma; mixed cell type; diffuse", - "Schneiderian papilloma; inverted", - "Fibroid uterus", - "Pleomorphic carcinoma", - "Mixed mesenchymal tumor", - "Lymphoepithelioma-like carcinoma", - "Cribriform carcinoma in situ", - "Germ cell tumor; nonseminomatous", - "Granular cell myoblastoma; NOS", - "Combined large cell neuroendocrine carcinoma", - "Endometrial sarcoma; NOS", - "Proliferative polycythemia", - "Glioblastoma multiforme", - "Polymorphous low grade adenocarcinoma", - "Secretory meningioma", - "Balloon cell melanoma", - "Acinar adenocarcinoma; sarcomatoid", - "Nevus; NOS", - "L-cell tumor", - "Serous tumor; NOS; of low malignant potential", - "Embryonal tumor with multilayered rosettes C19MC-altered", - "Lipid-rich Sertoli cell tumor", - "Therapy-related acute myeloid leukemia; alkylating agent related", - "Beta cell adenoma", - "Chorioepithelioma", - "Wolffian duct adenoma", - "Paget disease and infiltrating duct carcinoma of breast", - "Fibrous papule of nose", - "Ossifying fibromyxoid tumor; malignant", - "Oxyphilic adenoma", - "Chondroblastoma; NOS", - "Spiradenoma; NOS", - "Neurofibrosarcoma", - "Acute myeloid leukemia; minimal differentiation", - "Adult T-cell lymphoma/leukemia", - "Fibro-osteoma", - "Serrated adenoma", - "Transitional cell carcinoma; sarcomatoid", - "Therapy-related acute myeloid leukemia; epipodophyllotoxin-related", - "Non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP)", - "Clear cell chondrosarcoma", - "Enterochromaffin-like cell tumor; malignant", - "Thymoma; type C", - "Cemento-ossifying fibroma", - "Bronchial adenoma; carcinoid", - "Follicular carcinoma; minimally invasive", - "Non-invasive low grade serous carcinoma", - "Papillary adenocarcinoma; follicular variant", - "Serous borderline tumor-micropapillary variant", - "Medullary osteosarcoma", - "Medullary carcinoma; NOS", - "Aorticopulmonary paraganglioma", - "Bronchiolo-alveolar adenocarcinoma; NOS", - "Rhabdomyosarcoma with ganglionic differentiation", - "Acute mixed lineage leukemia", - "Solid pseudopapillary carcinoma", - "Gastrinoma; malignant", - "Neoplasm; malignant; uncertain whether primary or metastatic", - "Clear cell cystadenocarcinofibroma", - "Malignant myoepithelioma", - "Waldenstrom macroglobulinemia", - "Intestinal-type adenocarcinoma", - "Invasive mole; NOS", - "Sarcomatoid carcinoma", - "Flat adenoma", - "Sclerosing hepatic carcinoma", - "Transitional carcinoma", - "Malignant lymphoma; cleaved cell; NOS", - "Chronic myelogenous leukemia; Philadelphia chromosome (Ph 1) positive", - "Transitional pineal tumor", - "Cervical intraepithelial neoplasia; grade III", - "Minimally invasive adenocarcinoma; NOS", - "Malignant histiocytosis", - "Epidermoid carcinoma; small cell; nonkeratinizing", - "Seromucinous carcinoma", - "Cerebellar liponeurocytoma", - "Chronic myelogenous leukemia; BCR-ABL positive", - "Periosteal chondrosarcoma", - "Epithelioid cell nevus", - "Gemistocytoma", - "Cylindroma; NOS", - "Atypical adenoma", - "Perineural MPNST", - "Lymphoproliferative disorder; NOS", - "Ependymoblastoma", - "Glomangiosarcoma", - "Fibrous mesothelioma; NOS", - "Enteric adenocarcinoma", - "Carcinoma in adenomatous polyp", - "Chorioadenoma destruens", - "Cystosarcoma phyllodes; benign", - "Oat cell carcinoma", - "Acute promyelocytic leukaemia; PML-RAR-alpha", - "Atypical chronic myeloid leukemia; Philadelphia chromosome (Ph1) negative", - "Cutaneous mastocytosis", - "Melanotic neurofibroma", - "Erythremic myelosis; NOS", - "Undifferentiated high-grade pleomorphic sarcoma", - "Thymoma; type B2; malignant", - "Precursor T-cell lymphoblastic leukemia", - "Transitional cell carcinoma; spindle cell", - "Giant cell tumor of bone; malignant", - "Plasmacytoma; NOS", - "Cystadenoma; NOS", - "Peripheral neuroectodermal tumor", - "Anal intraepithelial neoplasia; low grade", - "Gliosarcoma", - "Acute myeloid leukemia with prior myelodysplastic syndrome", - "FAB M6", - "Pseudomucinous adenocarcinoma", - "Hidradenocarcinoma", - "B cell lymphoma; NOS", - "Olfactory neurogenic tumor", - "Neurofibroma; NOS", - "Glucagonoma; NOS", - "Tumor; NOS", - "Neurinomatosis", - "Sertoli-Leydig cell tumor; retiform", - "Hodgkin disease; lymphocyte predominance; NOS", - "Squamous cell papilloma; NOS", - "Common precursor B ALL", - "Squamous cell carcinoma; pseudoglandular", - "Hibernoma", - "Superficial well differentiated liposarcoma", - "Fetal adenocarcinoma", - "Malignant lymphoma; mixed lymphocytic-histiocytic; diffuse", - "Carcinoma in situ; NOS", - "Mesenchymoma; benign", - "Scirrhous adenocarcinoma", - "Serous surface papilloma", - "Epithelioid leiomyoma", - "Letterer-Siwe disease", - "Renal cell carcinoma; unclassified", - "Acute lymphoblastic leukemia; NOS", - "Low grade cribriform cystadenocarcinoma (LGCCC)", - "M6B", - "Solid carcinoma with mucin formation", - "Central neuroblastoma", - "Pro-T ALL", - "Hepatocellular carcinoma; spindle cell variant", - "T-cell lymphoma; NOS", - "Anaplastic medulloblastoma", - "Malignant lymphoma; noncleaved cell; follicular; NOS", - "Medulloblastoma; WNT-activated", - "Malignant lymphoma; lymphocytic; poorly differentiated; nodular", - "Luteoma; NOS", - "Desmoplastic nodular medulloblastoma", - "RAEB I", - "Serous papillary cystic tumor of borderline malignancy", - "Solid and cystic tumor", - "Periosteal fibroma", - "Preleukemic syndrome", - "Osteosarcoma in Paget disease of bone", - "Myofibroblastoma", - "Mucinous cystadenoma; NOS", - "Agnogenic myeloid metaplasia", - "Papillary carcinoma; tall cell", - "Clear cell ependymoma", - "Pseudomyxoma peritonei with unknown primary site", - "ALK positive large B-cell lymphoma", - "Small cell carcinoma; fusiform cell", - "Chronic erythremia", - "Sialoblastoma", - "Myeloid sarcoma", - "Subacute lymphoid leukemia", - "Ductal carcinoma in situ; papillary", - "Meningeal melanomatosis", - "Eccrine cystadenoma", - "Malignant lymphoma; small lymphocytic; diffuse", - "Periductal stromal tumor; low grade", - "Tumorlet; NOS", - "Adenomyoma", - "B lymphoblastic leukemia/lymphoma with t(5;14)(q31;q32); IL3-IGH", - "Juvenile myelomonocytic leukemia", - "Keratotoc papilloma", - "Odontogenic myxofibroma", - "Glomangioma", - "Oncocytic carcinoma", - "Piloid astrocytoma", - "Papillary transitional cell neoplasm of low malignant potential", - "Follicular lymphoma; NOS", - "Mixed small cell carcinoma", - "Peripheral T-cell lymphoma; large cell", - "Papillary meningioma", - "Pro-B ALL", - "Aleukemic myeloid leukemia", - "Desmoplastic medulloblastoma", - "Medulloblastoma; SHH-activated and TP53-mutant", - "FAB M7", - "Acute myeloid leukemia with myelodysplasia-related changes", - "Aggressive fibromatosis", - "Desmoid; NOS", - "Solitary fibrous tumor/hemangiopericytoma Grade 2 (CNS)", - "Fibromatosis-like metaplastic carcinoma", - "Magnocellular nevus", - "Dysplastic nevus", - "Esthesioneuroblastoma", - "Squamous intraepithelial neoplasia; grade I", - "Mucinous adenofibroma; NOS", - "Papillary squamous cell carcinoma; non-invasive", - "Carcinoid tumor; NOS; of appendix", - "Megakaryocytic myelosclerosis", - "Malignant chondroid syringoma", - "Villous adenoma; NOS", - "Sympathetic paraganglioma", - "Invasive mucinous adenocarcinoma", - "Fetal adenoma", - "Endometrial stromal sarcoma; high grade", - "Chorioangioma", - "Epithelioid hemangioendothelioma; malignant", - "Epithelioma adenoides cysticum", - "Angioimmunoblastic lymphoma", - "Ependymoma; RELA fusion-positive", - "Melanoameloblastoma", - "Sertoli cell tumor with lipid storage", - "Malignant lymphoma; follicular; NOS", - "Pheochromocytoma; NOS", - "Neuroendocrine tumor; grade 1", - "Acute lymphocytic leukemia", - "Granulosa cell tumor; adult type", - "Glomus tumor; malignant", - "Well differentiated thymic carcinoma", - "GIST; benign", - "Signet ring cell carcinoma", - "Cavernous lymphangioma", - "Multicentric basal cell carcinoma", - "Intracystic papillary tumor with high grade entraepithelial neoplasia", - "Atypical hyperplasia/Endometrioid intraepithelial neoplasm", - "Bile duct adenoma", - "Malignant lymphoma; lymphocytic; poorly differentiated; diffuse", - "Papillomatosis; NOS", - "Medulloepithelioma; NOS", - "Endometrioid adenofibroma; borderline malignancy", - "Regressing nevus", - "Squamous cell carcinoma; NOS", - "Mast cell tumor; NOS", - "Mixed basal-squamous cell carcinoma", - "Craniopharyngioma", - "DCIS; comedo type", - "Parietal cell adenocarcinoma", - "Solitary fibrous tumor", - "Juvenile hemangioma", - "Neuroectodermal tumor; NOS", - "Verrucous squamous cell carcinoma", - "Fibrolipoma", - "Pindborg tumor", - "Serous cystoma", - "Giant cell angiofibroma", - "Solitary fibrous tumor/hemangiopericytoma Grade 1 (CNS)", - "Angioendotheliomatosis", - "Mixed hepatocellular and bile duct carcinoma", - "Small cell carcinoma; NOS", - "Androblastoma; NOS", - "Pigmented spindle cell nevus of Reed", - "Adenomatous polyp; NOS", - "Sex cord tumor with annular tubules", - "Bronchial-associated lymphoid tissue lymphoma", - "Aggressive digital papillary adenoma", - "Myxopapillary ependymoma", - "Low-grade serous carcinoma", - "Benign fibrous histiocytoma", - "Intraosseous well differentiated osteosarcoma", - "Hemangioendothelial sarcoma", - "PNET; NOS", - "RARS", - "Squamous odontogenic tumor", - "Esophageal glandular dysplasia (intraepithelial neoplasia); high grade", - "Acute myeloid leukemia without maturation", - "Hodgkin lymphoma; nodular sclerosis; NOS", - "Serous cystadenoma; NOS", - "Classical Hodgkin lymphoma; lymphocyte depletion; reticular", - "Glassy cell carcinoma", - "Paget disease; extramammary", - "Pseudosarcomatous carcinoma", - "Composite carcinoid", - "Acute myeloid leukemia; M6 type", - "Lymphomatoid papulosis", - "Acute leukemia; Burkitt type", - "Intravascular leiomyomatosis", - "Acute myloid leukemia; 11q23 abnormalities", - "Squamous cell carcinoma; adenoid", - "Post transplant lymphoproliferative disorder; NOS", - "Ceruminous adenocarcinoma", - "Stromal tumor with minor sex cord elements", - "Melanocytic nevus", - "Cerebellar sarcoma; NOS", - "Mycosis fungoides", - "Dermatofibroma; NOS", - "Small cell sarcoma", - "Dedifferentiated liposarcoma", - "Hidradenoma papilliferum", - "Noninvasive pancreatobiliary papillary neoplasm with low grade intraepithelial neoplasia", - "Spindle cell melanoma; type B", - "Plexiform neurofibroma", - "Secretory carcinoma of breast", - "Peripheral T-cell lymphoma; AILD (Angioimmunoblastic Lymphadenopathy with Dysproteinemia)", - "Mixed cell adenocarcinoma", - "Papillary serous tumor of low malignant potential", - "Giant cell sarcoma", - "Comedocarcinoma; NOS", - "Chronic granulocytic leukemia; t(9;22)(q34;q11)", - "Spongioblastoma; NOS", - "Langerhans cell histiocytosis; unifocal", - "Hodgkin lymphoma; lymphocyte depletion; diffuse fibrosis", - "Aleukemic leukemia; NOS", - "Malignant lymphomatous polyposis", - "Ewing sarcoma", - "Renal cell adenocarcinoma", - "Endometrial stromal sarcoma; NOS", - "Pseudomucinous cystadenoma; borderline malignancy", - "Inflammatory liposarcoma", - "Intraductal tubulopapillary neoplasm", - "Esophageal squamous intraepithelial neoplasia (dysplasia); high grade", - "Abdominal desmoid", - "Neurilemoma; malignant", - "Rathke pouch tumor", - "Sclerosing hemangioma", - "Myxoid leiomyosarcoma", - "Bile duct cystadenoma", - "Squamous cell carcinoma; large cell; nonkeratinizing; NOS", - "Eccrine adenocarcinoma", - "Central osteosarcoma", - "Hepatocellular carcinoma; pleomorphic type", - "Cribriform carcinoma; NOS", - "Bronchiolo-alveolar carcinoma; NOS", - "Mucinous adenoma", - "Olfactory neuroepithelioma", - "Subacute leukemia; NOS", - "Polymorphic reticulosis", - "Acute basophilic leukaemia", - "Pilar tumor", - "AIN III", - "Serous cystadenocarcinofibroma", - "Tumor; metastatic", - "Choriocarcinoma; NOS", - "Chronic idiopathic myelofibrosis", - "Langerhans cell granulomatosis; unifocal", - "Follicular carcinoma; NOS", - "Thymoma; malignant; NOS", - "Pick tubular adenoma", - "Skin appendage adenoma", - "Immunoblastic sarcoma", - "Compound nevus", - "Choroid plexus carcinoma", - "Elastofibroma", - "Refractory anemia with sideroblasts", - "Thecoma; NOS", - "Malignant lymphoma; small cleaved cell; follicular", - "Orchioblastoma", - "FAB M1", - "Mesothelioma; biphasic; NOS", - "Chondromatosis; NOS", - "Pleomorphic liposarcoma", - "Mantle cell lymphoma (Includes all variants blastic; pleomorphic; small cell)", - "Glandular intraepithelial neoplasia; high grade", - "Malignant lymphoma; lymphocytic; intermediate differentiation; diffuse", - "Carcinoma showing thymus-like differentiation", - "Central neurocytoma", - "Sezary disease", - "Fibroblastic meningioma", - "Islet cell adenocarcinoma", - "Cellular leiomyoma", - "Transitional papilloma; inverted; benign", - "Acute myeloid leukemia with maturation", - "Oligodendroglioma; NOS", - "Spindle cell sarcoma", - "Lymphocytic leukemia; NOS", - "Olfactory neurocytoma", - "Hepatocholangiocarcinoma", - "Ductal carcinoma; NOS", - "Langerhans cell histiocytosis; disseminated", - "Meningioma; malignant", - "Malignant lymphoma; lymphocytic; intermediate differentiation; nodular", - "Nesidioblastoma", - "Sarcomatoid mesothelioma", - "Hepatocellular carcinoma; clear cell type", - "Endometrioid cystadenofibroma; malignant", - "Leiomyomatosis; NOS", - "Ghost cell odontogenic carcinoma", - "Malignant lymphoma; small lymphocytic; NOS", - "Liposarcoma; well differentiated", - "Lobular adenocarcinoma", - "Malignant lymphoma; large B-cell; diffuse; centroblastic; NOS", - "Sinonasal papilloma; exophytic", - "Seminoma; NOS", - "Blast cell leukemia", - "Angioimmunoblastic T-cell lymphoma", - "Biliary papillomatosis", - "Carcinofibroma", - "Lipid cell tumor of ovary", - "Neoplasm; malignant", - "Acidophil carcinoma", - "Oncocytic Schneiderian papilloma", - "T-cell large granular lymphocytic leukemia", - "Trichilemmal carcinoma", - "Glioma; NOS", - "Intestinal T-cell lymphoma", - "Solitary mastocytoma of skin", - "Not Reported", - "Mucoepidermoid tumor", - "Chondroblastoma; malignant", - "Skin appendage carcinoma", - "Cellular fibroma", - "Pre-pre-B ALL", - "Malignant teratoma; trophoblastic", - "Mixed pineal tumor", - "Osteocartilaginous exostosis", - "Ameloblastic odontosarcoma", - "Queyrat erythroplasia", - "Tubulovillous adenoma; NOS", - "Mucinous adenofibroma of borderline malignancy", - "Squamotransitional cell carcinoma", - "Localized fibrous tumor", - "Intradermal nevus", - "Mixed phenotype acute leukemia; T/myeloid; NOS", - "Synovioma; malignant", - "Malignant fibrous histiocytoma", - "Ameloblastic fibrosarcoma", - "Intracystic papillary tumor with high grade intraepithelial neoplasia", - "Myoepithelial tumor", - "Neurocytoma", - "Chondroblastic osteosarcoma", - "Lobular carcinoma; NOS", - "Malignant midline reticulosis", - "Primitive neuroectodermal tumor; NOS", - "Granulosa cell tumor; juvenile", - "Malignant lymphoma; lymphoplasmacytoid", - "Enteroglucagonoma; NOS", - "Adenocarcinoma in situ in villous adenoma", - "Atypical lipoma", - "LCIS; NOS", - "Embryonal carcinoma; infantile", - "Melanotic neuroectodermal tumor", - "Colloid carcinoma", - "Renal medullary carcinoma", - "Malignant lymphoma; small cell; noncleaved; diffuse", - "Angiocentric glioma", - "Adenomatoid tumor; NOS", - "T-zone lymphoma", - "Infiltrating lobular carcinoma and ductal carcinoma in situ", - "Low grade appendiceal mucinous neoplasm", - "Malignant lymphoma; centroblastic; follicular", - "Papillary ependymoma", - "Acute myeloid leukemia with inv(3)(q21q26.2) or t(3;3)(q21;q26.2); RPN1-EVI1", - "Lymphoepithelioma", - "Acute erythremic myelosis", - "Mucinous tumor; NOS; of low malignant potential", - "Follicular lymphoma; grade 1", - "Pancreatic endocrine tumor; benign", - "Acute myelogenous leukemia", - "Hodgkin disease; lymphocyte predominance; diffuse", - "Hepatocellular carcinoma; NOS", - "Paget disease; mammary", - "Adenoma of nipple", - "Spermatocytic seminoma", - "Reticulosarcoma; diffuse", - "Sertoli cell tumor; NOS", - "Melanotic psammomatous MPNST", - "Basal cell tumor", - "Neoplasm; benign", - "Enteropathy associated T-cell lymphoma", - "Idiopathic hemorrhagic thrombocythaemia", - "Precursor cell lymphoblastic leukemia; not phenotyped", - "Embryonal adenocarcinoma", - "Struma ovarii; malignant", - "Prostatic intraepithelial neoplasia; grade III", - "Hemangioblastic meningioma", - "Langerhans cell histiocytosis; NOS", - "Fibroadenoma; NOS", - "Papillary mucinous cystadenoma; borderline malignancy", - "Intraneural perineurioma", - "Bellini duct carcinoma", - "Adrenal cortical tumor; benign", - "Chronic leukemia; NOS", - "Adenocarcinoma; cylindroid", - "Clear cell tumor; NOS", - "Intraductal tubular-papillary neoplasm; high grade", - "Arteriovenous hemangioma", - "Renal cell carcinoma; spindle cell", - "Multiple neurofibromatosis", - "Tumor embolus", - "Juvenile carcinoma of breast", - "Periapical cemento-osseous dysplasia", - "Basal cell carcinoma; desmoplastic type", - "Calcifying epithelioma of Malherbe", - "Tibial adamantinoma", - "Serous tubal intraepithelial carcinoma", - "B-cell lymphoma; unclassifiable; with features intermediate between diffuse large B-cell lymphoma and Burkitt lymphoma", - "Primary cutaneous gamma-delta T-cell lymphoma", - "Glioneuroma", - "Chief cell adenoma", - "Solid papillary carcinoma with invasion", - "Glandular papilloma", - "Papillary squamous cell carcinoma in situ", - "Syringofibroadenoma", - "Wolffian duct carcinoma", - "Gonadal stromal tumor; NOS", - "Gastrointestinal pacemaker cell tumor", - "Teratoma; differentiated", - "Acute myeloid leukemia; MLL", - "Mesothelioma; biphasic; malignant", - "Malignant teratoma; undifferentiated", - "Osteochondrosarcoma", - "Atypical proliferating clear cell tumor", - "Lymphangiomyomatosis", - "Mixed tumor; malignant; NOS", - "Liposarcoma; NOS", - "Mesonephroma; NOS", - "Dermal and epidermal nevus", - "Epithelioid leiomyosarcoma", - "Florid osseous dysplasia", - "Desmoplastic melanoma; amelanotic", - "Infantile myofibromatosis", - "Hepatosplenic gamma-delta cell lymphoma", - "Pancreatobiliary-type carcinoma", - "Pseudomucinous cystadenoma; NOS", - "Adenocarcinoma with apocrine metaplasia", - "Myxoid chondrosarcoma", - "Transitional cell carcinoma in situ", - "Gangliocytic paraganglioma", - "Cystadenofibroma; NOS", - "Embryonal sarcoma", - "Mixed squamous cell and glandular papilloma", - "Intraepithelial squamous cell carcinoma", - "Teratoid medulloepithelioma", - "T lymphoblastic leukemia/lymphoma", - "Papillary adenoma; NOS", - "Adenocarcinoma with squamous metaplasia", - "Cystic lymphangioma", - "Eccrine dermal cylindroma", - "Oxyphilic adenocarcinoma", - "Cutaneous lymphoma; NOS", - "Cellular ependymoma", - "Subacute granulocytic leukemia", - "Malignant lymphoma; small B lymphocytic; NOS", - "Endometrioid adenocarcinoma; NOS", - "Central odontogenic fibroma", - "Sertoli-Leydig cell tumor; well differentiated", - "Intravascular bronchial alveolar tumor", - "Follicular carcinoma; oxyphilic cell", - "Papillary cystic tumor", - "Precursor cell lymphoblastic lymphoma; NOS", - "Hemangiopericytoma; malignant", - "Well differentiated liposarcoma of superficial soft tissue", - "Plexiform leiomyoma", - "Thymoma; cortical; malignant", - "Myelomonocytic leukemia; NOS", - "Osteoblastic sarcoma", - "Squamous papilloma", - "Transitional cell papilloma; inverted; NOS", - "Hemangioendothelioma; NOS", - "Intraepidermal carcinoma; NOS", - "Paraganglioma; NOS", - "Chordoid meningioma", - "Malignant lymphoma; nodular; NOS", - "Trichilemmocarcinoma", - "Malignant lymphoma; follicle center; NOS", - "Odontogenic ghost cell tumor", - "Hodgkin granuloma", - "Papillomatosis; glandular", - "FAB L3", - "Hairy nevus", - "Ectomesenchymoma", - "Neuroendocrine carcinoma; well-differentiated", - "Lymphosarcoma; diffuse", - "Malignant lymphoma; large cell; immunoblastic", - "Metastatic signet ring cell carcinoma", - "Solid and papillary epithelial neoplasm", - "B lymphoblastic leukemia/lymphoma with t(12;21)(p13;q22); TEL-AML1 (ETV6-RUNX1)", - "Sweat gland tumor; benign", - "Carotid body tumor", - "Gangliocytoma", - "Interdigitating dendritic cell sarcoma", - "Carcinoma with osseous differentiation", - "Amelanotic melanoma", - "Atypical carcinoid tumor", - "Lymphoid leukemia; NOS", - "Eosinophil adenoma", - "Small cell osteosarcoma", - "Adenocarcinoma; NOS", - "Lymphoblastoma", - "Traditional serrated adenoma", - "Malignant myelosclerosis", - "Bronchial adenoma; NOS", - "Tubular carcinoma", - "Sweat gland carcinoma", - "Oncocytic adenoma", - "Mucinous cystic tumor of borderline malignancy", - "Pituicytoma", - "Spindle cell nevus; NOS", - "Papillary mucinous cystadenoma; NOS", - "Round cell liposarcoma", - "Carcinosarcoma; embryonal", - "Extraosseous plasmacytoma", - "Smooth muscle tumor of uncertain malignant potential", - "Mesonephric adenoma", - "Hemangioma; NOS", - "Myelosclerosis with myeloid metaplasia", - "Acoustic neuroma", - "Mu heavy chain disease", - "Cementoblastoma; benign", - "Embryonal teratoma", - "Nonchromaffin paraganglioma; malignant", - "Villoglandular adenoma", - "Epithelioid sarcoma", - "Wilms tumor", - "Acinar cell carcinoma", - "Renal cell carcinoma; chromophobe type", - "Chronic eosinophilic leukemia; NOS", - "Glycogenic rhabdomyoma", - "Malignant lymphoma; noncleaved; diffuse; NOS", - "Malignant lymphoma; large cleaved cell; follicular", - "Ovarian stromal tumor", - "Mucinous cystic neoplasm with high-grade intraepithelial neoplasia", - "Chromaffin paraganglioma", - "Yolk sac tumor", - "Well differentiated papillary mesothelioma; benign", - "Chronic myelomonocytic leukemia; Type 1", - "Malignant schwannoma with rhabdomyoblastic differentiation", - "Acral lentiginous melanoma; malignant", - "Theca cell-granulosa cell tumor", - "Halo nevus", - "Sebaceous carcinoma", - "Serous carcinoma; NOS", - "Mediastinal (thymic) large B-cell lymphoma", - "Ecchondroma", - "Adrenal cortical adenocarcinoma", - "Hurthle cell carcinoma", - "Large cell calcifying Sertoli cell tumor", - "Mixed glioma", - "Intraductal papillary mucinous neoplasm with high grade dysplasia", - "Adenocarcinoma with spindle cell metaplasia", - "Low-grade central osteosarcoma", - "Phosphaturic mesenchymal tumor; malignant", - "Sertoli-Leydig cell tumor; sarcomatoid", - "Somatostatin cell tumor; NOS", - "Sweat gland tumor; malignant", - "Carcinomatosis", - "Meningothelial sarcoma", - "Sweat gland tumor; NOS", - "Adenosarcoma", - "Polar spongioblastoma", - "Ossifying fibroma", - "Glandular intraepithelial neoplasia; grade II", - "Duct adenocarcinoma; NOS", - "Thymoma; type B3; malignant", - "Plexiform fibrohistiocytic tumor", - "Acutemyeloidleukemia;t(15", - "Mucoepidermoid carcinoma", - "Lennert lymphoma", - "Acidophil adenocarcinoma", - "Meningothelial meningioma", - "Plexiform neuroma", - "Intraductal papillary neoplasm with high grade intraepithelial neoplasia", - "Ductal carcinoma; cribriform type", - "Malignant lymphoma; large cell; cleaved and noncleaved", - "Proliferating trichilemmal tumor", - "Prolymphocytic leukemia; B-cell type", - "Clear cell cystic tumor of borderline malignancy", - "Plexiform schwannoma", - "Paget disease and intraductal carcinoma of breast", - "Carcinoid; NOS", - "Systemic mastocytosis with AHNMD", - "Small cell neuroendocrine carcinoma", - "Minimally invasive adenocarcinoma; mucinous", - "Lipomatous medulloblastoma", - "Diffuse large B-cell lymphoma associated with chronic inflammation", - "Papillary mucinous cystadenocarcinoma", - "Embryonal carcinoma; NOS", - "Ameloblastic fibro-odontosarcoma", - "Neuroendocrine tumor; well differentiated", - "Hodgkin lymphoma; NOS", - "Tumor cells; uncertain whether benign or malignant", - "MPNST with glandular differentiation", - "Digital papillary adenocarcinoma", - "Intraductal papillary mucinous neoplasm with an associated invasive carcinoma", - "Papillary serous cystadenoma; NOS", - "Classical Hodgkin lymphoma; lymphocyte-rich", - "Phyllodes tumor; NOS", - "Follicular dendritic cell tumor", - "Krukenberg tumor", - "Mesothelial papilloma", - "Mucinous adenocarcinoma; endocervical type", - "Acute myeloid leukemia with mutated NPM1", - "Angiocentric immunoproliferative lesion", - "Malignant lymphoma; mixed small and large cell; diffuse", - "Reserve cell carcinoma", - "Gastrinoma; NOS", - "Primary diffuse large B-cell lymphoma of the CNS", - "Metaplastic carcinoma of no special type", - "Melanoma in situ", - "Angiotropic lymphoma", - "Thymoma; spindle cell; malignant", - "Malignant lymphoma; plasmacytoid", - "Unclassified tumor; benign", - "Malignant serous adenofibroma", - "Myoepithelial carcinoma", - "Marginal zone lymphoma; NOS", - "Adenocarcinoma in situ in adenomatous polyp", - "Islet cell tumor; NOS" - ] - }, - "Model Therapeutic Agent": { - "enum": [ - "Interferon Beta-1A", - "Elagolix", - "Mitotenamine", - "Anti-CD70 Monoclonal Antibody MDX-1411", - "CK2-targeting Synthetic Peptide CIGB-300", - "Curcumin/Doxorubicin-encapsulating Nanoparticle IMX-110", - "Etarotene", - "Pacritinib", - "Bleomycin Sulfate", - "Danvatirsen", - "Tyrosinase-KLH", - "Anti-EGFR Monoclonal Antibody CPGJ 602", - "STING-expressing E. coli SYNB1891", - "Enclomiphene Citrate", - "Anti-LAG-3 Monoclonal Antibody INCAGN02385", - "Phenytoin Sodium", - "Aurora B Serine/Threonine Kinase Inhibitor TAK-901", - "Protease-activated Anti-PD-L1 Antibody Prodrug CX-072", - "p70S6K/Akt Inhibitor MSC2363318A", - "Monoclonal Antibody MX35 F(ab')2", - "Lutetium Lu 177 Monoclonal Antibody J591", - "NEDD8 Activating Enzyme E1 Inhibitor TAS4464", - "Yttrium Y 90 Anti-CDH3 Monoclonal Antibody FF-21101", - "Macimorelin", - "Anti-PRAME Immunotherapeutic GSK2302032A", - "Entrectinib", - "Histrelin Acetate", - "Autologous CD19/PD-1 Bispecific CAR-T Cells", - "BCMA x CD3 T-cell Engaging Antibody CC-93269", - "Menatetrenone", - "CYP17/Androgen Receptor Inhibitor ODM 204", - "Anti-CD38/CD3 Bispecific Monoclonal Antibody GBR 1342", - "TGF-beta Receptor 1 Kinase Inhibitor SH3051", - "AKT 1/2 Inhibitor BAY1125976", - "Brequinar Sodium", - "Burixafor", - "Mitindomide", - "Pegylated Paclitaxel", - "Immunotoxin CMD-193", - "Anti-OX40 Monoclonal Antibody GSK3174998", - "Mitobronitol", - "Black Cohosh", - "Ruthenium-based Transferrin Targeting Agent NKP-1339", - "CBP/beta-catenin Modulator E7386", - "Prexasertib", - "Bexmarilimab", - "Rigosertib Sodium", - "Vandetanib", - "BCR-ABL/KIT/AKT/ERK Inhibitor HQP1351", - "Therapeutic Hydrocortisone", - "Natural IFN-alpha OPC-18", - "PIM/FLT3 Kinase Inhibitor SEL24", - "Ofatumumab", - "Anti-PSMA/CD3 Bispecific Antibody JNJ-63898081", - "Anti-ILT4 Monoclonal Antibody MK-4830", - "Dicycloplatin", - "Conatumumab", - "CDC7 Kinase Inhibitor LY3143921 Hydrate", - "Anti-CD40/Anti-4-1BB Bispecific Agonist Monoclonal Antibody GEN1042", - "Temoporfin", - "Therapeutic Estradiol", - "Idronoxil Suppository NOX66", - "Anti-PD-1 Monoclonal Antibody AK105", - "Decitabine and Cedazuridine", - "Asulacrine", - "Cyproterone Acetate", - "LMB-9 Immunotoxin", - "Allogeneic Cellular Vaccine 1650-G", - "Anti-Integrin Monoclonal Antibody-DM4 Immunoconjugate IMGN388", - "EGFR Mutant-selective Inhibitor TQB3804", - "FLT3 Inhibitor FF-10101 Succinate", - "CEA-targeting Agent RG6123", - "Anti-VEGF/ANG2 Nanobody BI 836880", - "PD-L1 Inhibitor INCB086550", - "TRPM8 Agonist D-3263", - "Vadastuximab Talirine", - "Nogalamycin", - "VGEF Mixed-Backbone Antisense Oligonucleotide GEM 220", - "Allosteric ErbB Inhibitor BDTX-189", - "Dendrimer-conjugated Bcl-2/Bcl-XL Inhibitor AZD0466", - "Notch Signaling Inhibitor PF-06650808", - "Syk Inhibitor HMPL-523", - "Gemcitabine Hydrochloride", - "BET Inhibitor BMS-986158", - "PE/HPV16 E7/KDEL Fusion Protein/GPI-0100 TVGV-1", - "STAT3 Inhibitor OPB-31121", - "Vincristine Liposomal", - "Lung-targeted Immunomodulator QBKPN", - "Anti-HER2/MMAE Antibody-drug Conjugate MRG002", - "CAIX Inhibitor DTP348", - "Picropodophyllin", - "Rhenium Re-188 Etidronate", - "Roblitinib", - "Arginase Inhibitor INCB001158", - "Ruxotemitide", - "Synthetic Long E6 Peptide-Toll-like Receptor Ligand Conjugate Vaccine ISA201", - "Alpha V Beta 1 Inhibitor ATN-161", - "Brentuximab", - "Selective Estrogen Receptor Degrader LX-039", - "LAIR-2 Fusion Protein NC410", - "STAT3 Inhibitor OPB-51602", - "Anti-CEACAM6 AFAIKL2 Antibody Fragment/Jack Bean Urease Immunoconjugate L-DOS47", - "Autologous NKG2D CAR-CD3zeta-DAP10-expressing T-Lymphocytes CYAD-01", - "Ibritumomab Tiuxetan", - "IL4-Pseudomonas Exotoxin Fusion Protein MDNA55", - "Paclitaxel Ceribate", - "Fosbretabulin Tromethamine", - "pDNA-encoding Emm55 Autologous Cancer Cell Vaccine IFx-Hu2.0", - "PSMA-targeted Tubulysin B-containing Conjugate EC1169", - "Trifluridine and Tipiracil Hydrochloride", - "Multi-neo-epitope Vaccine OSE 2101", - "Piperazinedione", - "Plamotamab", - "FGFR4 Inhibitor FGF401", - "Anti-c-KIT Monoclonal Antibody CDX 0158", - "VGEFR/c-kit/PDGFR Tyrosine Kinase Inhibitor XL820", - "ROBO1-targeted BiCAR-NKT Cells", - "Modified Vitamin D Binding Protein Macrophage Activator EF-022", - "Personalized Neoantigen DNA Vaccine GNOS-PVO2", - "Verubulin Hydrochloride", - "c-Met Inhibitor HS-10241", - "Anti-Myeloma Monoclonal Antibody-DM4 Immunoconjugate BT-062", - "Devimistat", - "TLR Agonist BDB001", - "Multi-epitope HER2 Peptide Vaccine TPIV100", - "Elisidepsin", - "CXC Chemokine Receptor 2 Antagonist AZD5069", - "Medroxyprogesterone", - "Anti-HER2 Bi-specific Monoclonal Antibody ZW25", - "Adenoviral Brachyury Vaccine ETBX-051", - "Marizomib", - "Anti-MUC16/CD3 Bispecific Antibody REGN4018", - "Docetaxel-PNP", - "Pegylated Recombinant L-asparaginase Erwinia chrysanthemi", - "Synthetic Alkaloid PM00104", - "Sodium Butyrate", - "Anti-ICAM-1 Monoclonal Antibody BI-505", - "Budotitane", - "Imgatuzumab", - "Molibresib", - "Panobinostat Nanoparticle Formulation MTX110", - "Pladienolide Derivative E7107", - "Enteric-Coated TRPM8 Agonist D-3263 Hydrochloride", - "Anti-VISTA Monoclonal Antibody JNJ 61610588", - "Anti-CD74 Antibody-drug Conjugate STRO-001", - "Ecromeximab", - "Acridine", - "Fluorouracil-E Therapeutic Implant", - "GSK-3 Inhibitor 9-ING-41", - "Fc-engineered Anti-CD40 Agonist Antibody 2141-V11", - "DNA-PK/PI3K-delta Inhibitor BR101801", - "Nedisertib", - "Voxtalisib", - "Duligotuzumab", - "Lutetium Lu 177 Dotatate", - "Anti-B7-H4 Monoclonal Antibody FPA150", - "Trofosfamide", - "Rebimastat", - "Cidan Herbal Capsule", - "Anti-AXL/PBD Antibody-drug Conjugate ADCT-601", - "SERD G1T48", - "Yttrium Y 90 Basiliximab", - "Smoothened Antagonist BMS-833923", - "Topical Potassium Dobesilate", - "CDC7 Inhibitor TAK-931", - "Galocitabine", - "Liposome-encapsulated miR-34 Mimic MRX34", - "Amifostine", - "Anti-CD38/CD28xCD3 Tri-specific Monoclonal Antibody SAR442257", - "Camptothecin-20(S)-O-Propionate Hydrate", - "Splicing Inhibitor H3B-8800", - "Tyroserleutide", - "Yangzheng Xiaoji Extract", - "4'-Iodo-4'-Deoxydoxorubicin", - "Vactosertib", - "Autologous Nectin-4/FAP-targeted CAR-T Cells", - "Itraconazole Dispersion In Polymer Matrix", - "Porcupine Inhibitor ETC-1922159", - "Almurtide", - "Dostarlimab", - "Remetinostat", - "Engineered Toxin Body Targeting CD38 TAK-169", - "Landogrozumab", - "Protein Phosphatase 2A Inhibitor LB-100", - "Ropocamptide", - "Varlitinib Tosylate", - "Teglarinad", - "Liposomal Vinorelbine", - "Double-armed TMZ-CD40L/4-1BBL Oncolytic Ad5/35 Adenovirus LOAd703", - "FGFR4 Inhibitor ICP-105", - "Tigapotide", - "Autologous NKG2D CAR T-cells CYAD-02", - "Vinzolidine", - "CYP17 Lyase Inhibitor ASN001", - "Aurora A Kinase Inhibitor MK5108", - "BTK Inhibitor ICP-022", - "Cell Cycle Checkpoint/DNA Repair Antagonist IC83", - "Camptothecin Glycoconjugate BAY 38-3441", - "Aprutumab Ixadotin", - "Dovitinib Lactate", - "SIRPa-IgG4-Fc Fusion Protein TTI-622", - "Anti-c-Met Antibody-drug Conjugate HTI-1066", - "EGFR/TGFb Fusion Monoclonal Antibody BCA101", - "Safingol", - "Ublituximab", - "p97 Inhibitor CB-5083", - "Yttrium Y 90 Monoclonal Antibody Hu3S193", - "Anti-CD70 Antibody-Drug Conjugate MDX-1203", - "Cytarabine", - "Elliptinium", - "Estramustine", - "Carbon C 14-pamiparib", - "Bortezomib", - "Avitinib Maleate", - "Captopril", - "Liarozole Fumarate", - "Oncolytic HSV-1 G207", - "Medorubicin", - "Shark Cartilage Extract AE-941", - "Tanibirumab", - "Nitric Oxide-Releasing Acetylsalicylic Acid Derivative", - "Canerpaturev", - "EGFR/EGFRvIII Inhibitor WSD0922-FU", - "Lovastatin", - "TGFbeta Receptor Ectodomain-IgG Fc Fusion Protein AVID200", - "Valecobulin", - "Tegafur-Uracil", - "Prostaglandin E2 EP4 Receptor Inhibitor E7046", - "Engineered Human Umbilical Vein Endothelial Cells AB-205", - "Allogeneic Large Multivalent Immunogen Melanoma Vaccine LP2307", - "Thyroid Extract", - "Avdoralimab", - "Anti-CSF1 Monoclonal Antibody PD-0360324", - "Etoglucid", - "Arginine Butyrate", - "Indole-3-Carbinol", - "Androgen Receptor Degrader CC-94676", - "Ginsenoside Rg3 Capsule", - "Peposertib", - "Pegargiminase", - "Anti-CD27 Agonistic Monoclonal Antibody MK-5890", - "Oncolytic HSV-1 Expressing IL-12 and Anti-PD-1 Antibody T3011", - "Tranylcypromine Sulfate", - "Yttrium Y 90 Monoclonal Antibody B3", - "c-Met Inhibitor MSC2156119J", - "Mosedipimod", - "2-Methoxyestrone", - "Oral Milataxel", - "Zinc Finger Nuclease ZFN-758", - "Diphtheria Toxin Fragment-Interleukin-2 Fusion Protein E7777", - "Pegylated Liposomal Mitomycin C Lipid-based Prodrug", - "Anti-CD3 Immunotoxin A-dmDT390-bisFv(UCHT1)", - "BTK inhibitor TG-1701", - "Neoantigen-HSP70 Peptide Cancer Vaccine AGEN2017", - "NG-nitro-L-arginine", - "Anti-c-Met Monoclonal Antibody ABT-700", - "p53-HDM2 Interaction Inhibitor MI-773", - "Recombinant Thyrotropin Alfa", - "Anti-CD20-engineered Toxin Body MT-3724", - "Bcr-Abl Kinase Inhibitor PF-114", - "Bimiralisib", - "Topsalysin", - "Anti-CLEC12A/CD3 Bispecific Antibody MCLA117", - "Osilodrostat", - "Acronine", - "Cobolimab", - "Erlotinib", - "Anti-CD33/CD3 Bispecific Antibody JNJ-67571244", - "Colchicine-Site Binding Agent ABT-751", - "STAT3 Inhibitor DSP-0337", - "Lurbinectedin", - "Denenicokin", - "Anti-CD3/Anti-CD20 Trifunctional Bispecific Monoclonal Antibody FBTA05", - "Monoclonal Antibody ASP1948", - "Photosensitizer LUZ 11", - "Limonene; (+)-", - "LSD1 Inhibitor SYHA1807", - "Limonene; (+/-)-", - "Levetiracetam", - "Pirarubicin Hydrochloride", - "Recombinant Human Papillomavirus Bivalent Vaccine", - "Quinine", - "BET Inhibitor INCB054329", - "HPV-6-targeting Immunotherapeutic Vaccine INO-3106", - "ICT-121 Dendritic Cell Vaccine", - "Ad-RTS-hIL-12", - "Antibody-drug Conjugate SC-004", - "PARP/Tankyrase Inhibitor 2X-121", - "Lm-tLLO-neoantigens Vaccine ADXS-NEO", - "Pegilodecakin", - "Anti-B7-H3/DXd Antibody-drug Conjugate DS-7300a", - "Antibody-drug Conjugate SC-005", - "Dinutuximab", - "Glaucarubolone", - "Microbiome GEN-001", - "Selective Cytokine Inhibitory Drug CC-1088", - "Zorubicin", - "Padoporfin", - "Chimeric Monoclonal Antibody 81C6", - "AR Antagonist BMS-641988", - "Gilteritinib", - "Oglufanide Disodium", - "Anti-CD3/CD38 Bispecific Monoclonal Antibody AMG 424", - "Peginterferon Alfa-2b", - "Atrasentan Hydrochloride", - "Lutetium Lu-177 PSMA-R2", - "Anti-PD-L1 Monoclonal Antibody SHR-1316", - "Anti-TIGIT Monoclonal Antibody BMS-986207", - "Thorium Th 227 Anetumab", - "Telratolimod", - "Lometrexol Sodium", - "HDAC Inhibitor CXD101", - "Anti-CD38-targeted IgG4-attenuated IFNa TAK-573", - "Interferon Alfa-N1", - "Paclitaxel", - "Pimitespib", - "Belimumab", - "Ashwagandha Root Powder Extract", - "CD73 Inhibitor LY3475070", - "Methoxyamine Hydrochloride", - "Phenesterin", - "Anti-ROR1 ADC VLS-101", - "Nelarabine", - "Palbociclib", - "MEK Inhibitor CI-1040", - "Hsp90 Inhibitor TQB3474", - "Zinostatin Stimalamer", - "Oral Myoma Vaccine V3-myoma", - "Anti-CD3/Anti-GPRC5D Bispecific Monoclonal Antibody JNJ-64407564", - "Autologous CD19-targeted CAR T Cells CC-97540", - "Hsp90 Inhibitor Debio 0932", - "Patupilone", - "Zoledronic Acid", - "Emapalumab", - "Oxaliplatin Eluting Beads", - "Anti-nectin-4 Monoclonal Antibody-Drug Conjugate AGS-22M6E", - "Uprosertib", - "Recombinant Human EGF-rP64K/Montanide ISA 51 Vaccine", - "VEGFR/FGFR Inhibitor ODM-203", - "Microbiome-derived Peptide Vaccine EO2401", - "Tyrosine Kinase Inhibitor OSI-930", - "Exicorilant", - "Defactinib", - "IMT-1012 Immunotherapeutic Vaccine", - "Maytansine", - "Light-activated AU-011", - "BTK Inhibitor CT-1530", - "Anti-BCMA/PBD ADC MEDI2228", - "Asaley", - "KSP Inhibitor AZD4877", - "Ortataxel", - "Anti-PD-1 Monoclonal Antibody JTX-4014", - "BET Inhibitor ABBV-744", - "Inebilizumab", - "Antineoplastic Vaccine", - "Anti-A5B1 Integrin Monoclonal Antibody PF-04605412", - "EGFR Inhibitor AZD3759", - "Anti-CD40 Monoclonal Antibody Chi Lob 7/4", - "Lirilumab", - "Norgestrel", - "Nagrestipen", - "PI3K/mTOR Kinase Inhibitor VS-5584", - "Ras Peptide CYS", - "Alestramustine", - "Prostaglandin E2 EP4 Receptor Inhibitor AN0025", - "Ceramide Nanoliposome", - "Lorlatinib", - "Fotretamine", - "Tubulin Polymerization Inhibitor CKD-516", - "Denibulin Hydrochloride", - "Leflunomide", - "FGFR4 Antagonist INCB062079", - "Ruthenium-based Small Molecule Therapeutic BOLD-100", - "MCL-1 Inhibitor AMG 176", - "Liposomal Daunorubicin Citrate", - "Z-Endoxifen Hydrochloride", - "Phosphaplatin PT-112", - "Recombinant Human Hsp110-gp100 Chaperone Complex Vaccine", - "Shenqi Fuzheng Injection SQ001", - "STING Agonist MK-1454", - "Deslorelin Acetate", - "ADH-1", - "Cytokine-based Biologic Agent IRX-2", - "Enoticumab", - "Manelimab", - "Allogeneic Anti-CD20 CAR T-cells LUCAR-20S", - "Coriolus Versicolor Extract", - "Prednimustine", - "Brivanib Alaninate", - "Recombinant Leukocyte Interleukin", - "Amino Acid Injection", - "Melphalan", - "Modakafusp Alfa", - "RIPK1 Inhibitor GSK3145095", - "EGFR Mutant-specific Inhibitor BPI-7711", - "Pirfenidone", - "Venetoclax", - "Trimetrexate", - "Sofituzumab Vedotin", - "Anti-CA19-9 Monoclonal Antibody 5B1", - "Halichondrin Analogue E7130", - "Liposomal NDDP", - "Andecaliximab", - "Oxaliplatin-Encapsulated Transferrin-Conjugated N-glutaryl Phosphatidylethanolamine Liposome", - "PI3K Inhibitor ACP-319", - "Adenoviral Tumor-specific Neoantigen Priming Vaccine GRT-C901", - "Cimetidine", - "Oncolytic Herpes Simplex Virus-1 ONCR-177", - "Anti-CTLA-4 Monoclonal Antibody HBM4003", - "GI-4000 Vaccine", - "Anti-ILDR2 Monoclonal Antibody BAY 1905254", - "Coxsackievirus V937", - "Anti-PD-1 Checkpoint Inhibitor PF-06801591", - "Mitoxantrone", - "Anti-CEACAM1 Monoclonal Antibody CM-24", - "Anti-PD-1 Monoclonal Antibody CS1003", - "Heparin Derivative SST0001", - "Baltaleucel-T", - "Navarixin", - "RAF Kinase Inhibitor L-779450", - "Carzelesin", - "HDAC Inhibitor CKD-581", - "Galarubicin", - "Idarubicin-Eluting Beads", - "PD-L1/4-1BB/HSA Trispecific Fusion Protein NM21-1480", - "Alanosine", - "Curcumin", - "Rindopepimut", - "Zelavespib", - "Radix Angelicae Sinensis/Radix Astragali Herbal Supplement", - "Pelitinib", - "Depatuxizumab", - "Leuprolide Acetate", - "Liposomal Curcumin", - "FLT3/FGFR Dual Kinase Inhibitor MAX-40279", - "Monoclonal Antibody RAV12", - "FGFR Inhibitor TAS-120", - "Anti-BCMA/CD3 BiTE Antibody REGN5458", - "Rezivertinib", - "mTORC1/mTORC2/DHFR Inhibitor ABTL0812", - "Pan-AKT Inhibitor ARQ751", - "PI3K-gamma Inhibitor IPI-549", - "Beta-Thioguanine Deoxyriboside", - "Pharmacological Ascorbate", - "Nedaplatin", - "HPV6/11-targeted DNA Plasmid Vaccine INO-3107", - "Delanzomib", - "Golotimod", - "Topical Fluorouracil", - "Amrubicin", - "Autologous MCPyV-specific HLA-A02-restricted TCR-transduced CD4+ and CD8+ T-cells FH-MCVA2TCR", - "p38 MAPK Inhibitor LY3007113", - "Synthetic hTERT DNA Vaccine INO-1400", - "Diethylnorspermine", - "Medroxyprogesterone Acetate", - "Oncolytic Newcastle Disease Virus MTH-68H", - "Recombinant Macrophage Colony-Stimulating Factor", - "Alvespimycin", - "Dendritic Cell-Autologous Lung Tumor Vaccine", - "RhoC Peptide Vaccine RV001V", - "Monoclonal Antibody huJ591", - "Deferoxamine Mesylate", - "Crenolanib", - "Ranibizumab", - "Vesigenurtucel-L", - "Vinepidine", - "Recombinant Human Papillomavirus 11-valent Vaccine", - "Coltuximab Ravtansine", - "Hydrocortisone Sodium Succinate", - "Vinorelbine", - "p53 Peptide Vaccine MPS-128", - "NLRP3 Agonist BMS-986299", - "Recombinant CD40-Ligand", - "Carlumab", - "Copper Cu 67 Tyr3-octreotate", - "p97 Inhibitor CB-5339 Tosylate", - "Robatumumab", - "Serdemetan", - "Spherical Nucleic Acid Nanoparticle NU-0129", - "Cord Blood Derived CAR T-Cells", - "Ras Peptide ASP", - "Navy Bean Powder", - "Chrysanthemum morifolium/Ganoderma lucidum/Glycyrrhiza glabra/Isatis indigotica/Panax pseudoginseng/Rabdosia rubescens/Scutellaria baicalensis/Serona repens Supplement", - "Epipodophyllotoxin Analog GL331", - "Belagenpumatucel-L", - "Anti-HER2 Antibody-drug Conjugate MEDI4276", - "CAR T-Cells AMG 119", - "2-Fluorofucose-containing SGN-2FF", - "Encorafenib", - "Ixazomib Citrate", - "Dactinomycin", - "Ilorasertib", - "Y 90 Monoclonal Antibody HMFG1", - "Anti-TROP2 Antibody-drug Conjugate SKB264", - "Cevipabulin", - "Y 90 Monoclonal Antibody Lym-1", - "Aldesleukin", - "Anti-CD19 Monoclonal Antibody DI-B4", - "Trastuzumab Deruxtecan", - "Cyclin-dependent Kinase 8/19 Inhibitor BCD 115", - "Anti-CD20 Monoclonal Antibody SCT400", - "Piperine Extract (Standardized)", - "MEK Inhibitor HL-085", - "Taurultam Analogue GP-2250", - "Tabalumab", - "Anti-Ep-CAM Monoclonal Antibody ING-1", - "Pelabresib", - "Monocarboxylate Transporter 1 Inhibitor AZD3965", - "Cedefingol", - "Garlic", - "Navicixizumab", - "Recombinant Tyrosinase-Related Protein-2", - "Anti-TIM3 Monoclonal Antibody SHR-1702", - "Antibody-drug Conjugate ADC XMT-1536", - "Neoantigen-based Renal Cell Carcinoma-Poly-ICLC Vaccine", - "STING Agonist GSK3745417", - "S-Adenosylmethionine", - "Chloroquine", - "Folic Acid", - "Anti-PD-1 Monoclonal Antibody LZM009", - "EGFR Inhibitor DBPR112", - "FGFR/VEGFR/PDGFR/FLT3/SRC Inhibitor XL999", - "Flumatinib Mesylate", - "Aurora A Kinase/Tyrosine Kinase Inhibitor ENMD-2076", - "Girentuximab", - "Poly-alendronate Dextran-Guanidine Conjugate", - "PIM Kinase Inhibitor SGI-1776", - "Gamma-delta Tocotrienol", - "Huang Lian", - "Anti-CCR7 Antibody-drug Conjugate JBH492", - "Exisulind", - "Methionine Aminopeptidase 2 Inhibitor PPI-2458", - "Inactivated Oncolytic Virus Particle GEN0101", - "PAK4 Inhibitor PF-03758309", - "Immunotherapeutic Combination Product CMB305", - "Samrotamab Vedotin", - "NY-ESO-1-specific TCR Gene-transduced T Lymphocytes TBI-1301", - "Autologous ACTR-CD16-CD28-expressing T-lymphocytes ACTR707", - "Methanol Extraction Residue of BCG", - "Monoclonal Antibody 3H1 Anti-Idiotype Vaccine", - "I 131 Monoclonal Antibody A33", - "Feladilimab", - "Flotetuzumab", - "Dexrazoxane Hydrochloride", - "IDO/TDO Inhibitor HTI-1090", - "Neoantigen Vaccine GEN-009", - "Telapristone Acetate", - "Topotecan Hydrochloride", - "Tacedinaline", - "Chloroquinoxaline Sulfonamide", - "Doxorubicin-loaded EGFR-targeting Nanocells", - "Tirbanibulin", - "Selective Estrogen Receptor Degrader AZD9833", - "Autologous CD19-targeted CAR-T Cells GC007F", - "Galamustine", - "Synthetic hTERT DNA Vaccine INO-1401", - "PEP-3-KLH Conjugate Vaccine", - "Elsamitrucin", - "SERD SHR9549", - "Lutetium Lu-177 Rituximab", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells CT053", - "Anti-PD1/CTLA4 Bispecific Antibody XmAb20717", - "Anti-MMP-9 Monoclonal Antibody GS-5745", - "Anti-FGFR4 Monoclonal Antibody U3-1784", - "Bardoxolone", - "Aprinocarsen", - "Anti-TROP2 Antibody-drug Conjugate BAT8003", - "Dopamine-Somatostatin Chimeric Molecule BIM-23A760", - "Glutaminase Inhibitor CB-839", - "Ocrelizumab", - "Agatolimod Sodium", - "Chemotherapy", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing Memory T-lymphocytes bb21217", - "Detorubicin", - "Ibrutinib", - "Recombinant Interferon Gamma", - "Apolizumab", - "Ontuxizumab", - "Antineoplaston AS2-1", - "Cetuximab-loaded Ethylcellulose Polymeric Nanoparticles Decorated with Octreotide (SY)", - "FGFR4 Inhibitor H3B-6527", - "Babaodan Capsule", - "Recombinant Erythropoietin", - "Glofitamab", - "Olaratumab", - "Nilutamide", - "Oncolytic HSV-1 C134", - "Astatine At 211 Anti-CD38 Monoclonal Antibody OKT10-B10", - "Class 1/4 Histone Deacetylase Inhibitor OKI-179", - "Endothelin B Receptor Blocker ENB 003", - "Notch Signaling Pathway Inhibitor MK0752", - "AXL Inhibitor DS-1205c", - "Paclitaxel Vitamin E-Based Emulsion", - "Prolgolimab", - "Ramucirumab", - "Survivin Antigen Vaccine DPX-Survivac", - "Wee1 Inhibitor ZN-c3", - "Autologous Anti-CD22 CAR-4-1BB-TCRz-transduced T-lymphocytes CART22-65s", - "Barasertib", - "HDAC/EGFR/HER2 Inhibitor CUDC-101", - "Zinostatin", - "Bispecific Antibody MDX-H210", - "Antineoplastic Agent Combination SM-88", - "Apaziquone", - "Rhenium Re-186 Hydroxyethylidene Diphosphonate", - "Adenovirus Serotype 26-expressing HPV16 Vaccine JNJ-63682918", - "Clomesone", - "BRD4 Inhibitor PLX51107", - "Edrecolomab", - "Flutamide", - "Capecitabine", - "Idarubicin Hydrochloride", - "Palonosetron Hydrochloride", - "Luminespib", - "PEG-Proline-Interferon Alfa-2b", - "Tauromustine", - "Anti-CD71/vcMMAE Probody-drug Conjugate CX-2029", - "Mitoxantrone Hydrochloride", - "Alisertib", - "Anti-CD47 Monoclonal Antibody CC-90002", - "Paxalisib", - "Naquotinib", - "Sustained-release Lipid Inhaled Cisplatin", - "Alacizumab Pegol", - "Lentinan", - "DNA Minor Groove Binding Agent SG2000", - "Olaptesed Pegol", - "Bisnafide Dimesylate", - "ERK Inhibitor LTT462", - "Adenosine A2A/A2B Receptor Antagonist AB928", - "ALK Inhibitor", - "Anti-PD-L1 Monoclonal Antibody CBT-502", - "LMP-2", - "DR5 HexaBody Agonist GEN1029", - "Allogeneic Natural Killer Cell Line NK-92", - "IL-2/9/15 Gamma Chain Receptor Inhibitor BNZ-1", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing T-cells C-CAR088", - "Therapeutic Breast/Ovarian/Prostate Peptide Cancer Vaccine DPX-0907", - "Edodekin alfa", - "CDK7 Inhibitor SY-1365", - "Carbetimer", - "Activin Type 2B Receptor Fc Fusion Protein STM 434", - "Pol I Inhibitor CX5461", - "Fadraciclib", - "Decitabine", - "Anti-PSMA/CD3 Bispecific Antibody CCW702", - "BRAF Inhibitor", - "CHK1 Inhibitor PF-477736", - "Inosine 5'-monophosphate Dehydrogenase Inhibitor FF-10501-01", - "Cabazitaxel", - "Anti-CD228/MMAE Antibody-drug Conjugate SGN-CD228A", - "Bispecific Antibody AMG 509", - "CDK8/19 Inhibitor SEL 120", - "Guselkumab", - "PARP Inhibitor E7016", - "Anti-LAG-3 Monoclonal Antibody IBI-110", - "Bruceanol H", - "Src Kinase Inhibitor KX2-391 Ointment", - "Concentrated Lingzhi Mushroom Extract", - "Minretumomab", - "Anti-PD-1 Monoclonal Antibody BI 754091", - "Tazarotene", - "Thiarabine", - "Antigen-presenting Cells-expressing HPV16 E6/E7 SQZ-PBMC-HPV", - "Hsp90 Inhibitor HSP990", - "Tenalisib", - "Recombinant Human Angiotensin Converting Enzyme 2 APN01", - "ERK Inhibitor MK-8353", - "Canfosfamide Hydrochloride", - "CT2584 HMS", - "At 211 Monoclonal Antibody 81C6", - "Anti-mesothelin/MMAE Antibody-Drug Conjugate DMOT4039A", - "Monoclonal Antibody 7C11", - "Docetaxel Formulation CKD-810", - "Hsp90 Inhibitor BIIB028", - "PI3K-beta Inhibitor SAR260301", - "Dienogest", - "Rosmantuzumab", - "Fluorouracil Implant", - "MDM2/MDMX Inhibitor ALRN-6924", - "Autologous CRISPR-edited Anti-CD19 CAR T Cells XYF19", - "Larotinib Mesylate", - "MOF Compound RiMO-301", - "Autologous Anti-PSMA CAR-T Cells P-PSMA-101", - "Monoclonal Antibody GD2 Anti-Idiotype Vaccine", - "Polatuzumab Vedotin", - "Anti-MUC17/CD3 BiTE Antibody AMG 199", - "Pyridyl Cyanoguanidine CHS 828", - "JAK Inhibitor", - "Edicotinib", - "Capmatinib", - "Anti-CD37 Monoclonal Antibody BI 836826", - "IAP Inhibitor APG-1387", - "XIAP Antisense Oligonucleotide AEG35156", - "Prednisolone Acetate", - "Autologous Genetically-modified MAGE-A4 C1032 CD8alpha T Cells", - "Diphencyprone", - "Esperamicin A1", - "4-Nitroestrone 3-Methyl Ether", - "Gemcitabine", - "Ingenol Mebutate", - "Efizonerimod", - "Anti-OX40 Agonist Monoclonal Antibody ABBV-368", - "Irradiated Allogeneic Human Lung Cancer Cells Expressing OX40L-Ig Vaccine HS-130", - "Sotigalimab", - "5-Aza-4'-thio-2'-deoxycytidine", - "Benaxibine", - "Personalized ALL-specific Multi-HLA-binding Peptide Vaccine", - "Combretastatin A-1", - "Neoantigen-based Therapeutic Cancer Vaccine GRT-C903", - "Vitespen", - "AutologousHPV16E7-specificHLA-A*02", - "BET inhibitor BI 894999", - "Relatlimab", - "Antibody-drug Conjugate PF-06647263", - "PCNU", - "Bisantrene Hydrochloride", - "Oral Aminolevulinic Acid Hydrochloride", - "PDK1 Inhibitor AR-12", - "Autologous Deep IL-15 Primed T-cells TRQ15-01", - "Teclistamab", - "Vandetanib-eluting Radiopaque Bead BTG-002814", - "Vinorelbine Tartrate Emulsion", - "Antibody-Drug Conjugate DFRF4539A", - "Anti-nf-P2X7 Antibody Ointment BIL-010t", - "Anti-CD47 Monoclonal Antibody TJC4", - "Engineered Toxin Body Targeting HER2 MT-5111", - "Angiogenesis Inhibitor GT-111", - "CD123-CD33 Compound CAR T Cells", - "Photodynamic Compound TLD-1433", - "Clinical Trial Agent", - "RAD51 Inhibitor CYT-0851", - "Rocapuldencel-T", - "Yttrium Y-90 Tacatuzumab Tetraxetan", - "Recombinant Interleukin-12", - "Procarbazine Hydrochloride", - "Pan-PIM Inhibitor INCB053914", - "Abemaciclib Mesylate", - "Thalidomide", - "Etalocib", - "MEK 1/2 Inhibitor FCN-159", - "mTORC1/2 Kinase Inhibitor BI 860585", - "Anti-CD20 Monoclonal Antibody BAT4306F", - "Capivasertib", - "IL-12sc; IL-15sushi; IFNa and GM-CSF mRNA-based Immunotherapeutic Agent SAR441000", - "Tipiracil Hydrochloride", - "Indomethacin", - "AutologousLMP1/LMP2/EBNA1-specificHLA-A02", - "MDM2 Inhibitor AMG-232", - "Anti-CD37 MMAE Antibody-drug Conjugate AGS67E", - "BET-bromodomain Inhibitor ODM-207", - "Balixafortide", - "Lonafarnib", - "Amatuximab", - "WT1-A10/AS01B Immunotherapeutic GSK2130579A", - "DPX-E7 HPV Vaccine", - "Recombinant Interferon Alfa-1b", - "Ruxolitinib Phosphate", - "Anti-VEGF/TGF-beta 1 Fusion Protein HB-002T", - "Monoclonal Antibody A1G4 Anti-Idiotype Vaccine", - "Niraparib", - "Imexon", - "LMB-1 Immunotoxin", - "Mosunetuzumab", - "Anti-PD-L1 Monoclonal Antibody A167", - "GM-CSF-encoding Oncolytic Adenovirus CGTG-102", - "Bcl-2 Inhibitor APG 2575", - "Farnesyltransferase/Geranylgeranyltransferase Inhibitor L-778;123", - "Acodazole", - "Angiogenesis Inhibitor JI-101", - "Estramustine Phosphate Sodium", - "Anti-ErbB2/Anti-ErbB3 Bispecific Monoclonal Antibody MM-111", - "JNK Inhibitor CC-401", - "Relugolix", - "Autologous Anti-CD19 CAR-expressing T-lymphocytes CLIC-1901", - "Ralimetinib Mesylate", - "Recombinant Interferon Alfa-2b", - "Roflumilast", - "Bi-functional Alkylating Agent VAL-083", - "Tebentafusp", - "Anti-myostatin Monoclonal Antibody LY2495655", - "Axalimogene Filolisbac", - "Emitefur", - "Pegylated Recombinant Human Arginase I BCT-100", - "Anti-LAG-3 Monoclonal Antibody LAG525", - "Edelfosine", - "Sirolimus", - "Ianalumab", - "Androgen Receptor Downregulator AZD3514", - "Autologous Anti-CD19 CAR-CD28 T-cells ET019002", - "pan FGFR Inhibitor PRN1371", - "Protein Arginine Methyltransferase 5 Inhibitor PF-06939999", - "Polyamine Transport Inhibitor AMXT-1501 Dicaprate", - "MAGE-A4-specific TCR Gene-transduced Autologous T Lymphocytes TBI-1201", - "Birinapant", - "ALK/FAK/Pyk2 Inhibitor CT-707", - "Mitoguazone Dihydrochloride", - "Tesetaxel", - "Yttrium Y 90 Colloid", - "Tritylcysteine", - "Brostallicin", - "Hydralazine Hydrochloride", - "Arabinoxylan Compound MGN3", - "Naphthalimide Analogue UNBS5162", - "BRAF(V600E) Kinase Inhibitor ABM-1310", - "Rucaparib", - "Thioguanine", - "Retinoid 9cUAB30", - "Anti-CEA BiTE Monoclonal Antibody AMG211", - "Azacitidine", - "Dalotuzumab", - "Immunomodulatory Oligonucleotide HYB2055", - "JAK1 Inhibitor AZD4205", - "Palbociclib Isethionate", - "Procarbazine", - "Ensartinib", - "PI3Kalpha Inhibitor AZD8835", - "Prexigebersen", - "Oncolytic HSV1716", - "FGFR4 Inhibitor BLU 9931", - "Amolimogene Bepiplasmid", - "Oregovomab", - "Ivosidenib", - "PI3K Inhibitor WX-037", - "AE37 Peptide/GM-CSF Vaccine", - "ALK/c-Met Inhibitor TQ-B3139", - "FPV-Brachyury-TRICOM Vaccine", - "Cinrebafusp Alfa", - "Simotaxel", - "Bisnafide", - "Deoxycytidine Analogue TAS-109", - "Interleukin Therapy", - "Azapicyl", - "Cold Contaminant-free Iobenguane I-131", - "Ciclopirox Prodrug CPX-POM", - "Letrozole", - "Fruquintinib", - "L-methylfolate", - "ALK-2 Inhibitor TP-0184", - "Zibotentan", - "Nilotinib Hydrochloride Anhydrous", - "Anti-CD33/CD3 BiTE Antibody AMG 673", - "Anti-OFA Immunotherapeutic BB-MPI-03", - "Lipid Nanoparticle Encapsulated OX40L mRNA-2416", - "Palifosfamide Tromethamine", - "Ivuxolimab", - "Pamiparib", - "Gandotinib", - "Topixantrone", - "Sacituzumab Govitecan", - "CCR2/CCR5 Antagonist BMS-813160", - "Lutetium Lu 177 PP-F11N", - "MEK Inhibitor WX-554", - "Herbimycin", - "Tirabrutinib", - "Anti-PD-1 Monoclonal Antibody SCT-I10A", - "SHP2 Inhibitor RMC-4630", - "Wnt-5a Mimic Hexapeptide Foxy-5", - "Alflutinib Mesylate", - "CDK4/6 Inhibitor HS-10342", - "CXCR4 Antagonist USL311", - "Androgen Antagonist APC-100", - "Attenuated Listeria monocytogenes CRS-100", - "PI3K Inhibitor ZSTK474", - "Recombinant MAGE-3.1 Antigen", - "Temozolomide", - "HPPH", - "Troglitazone", - "Copper Cu 64-ATSM", - "Monoclonal Antibody 3F8", - "EZH2 Inhibitor PF-06821497", - "Luminespib Mesylate", - "Microtubule Inhibitor SCB01A", - "Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody GBR 1302", - "Allogeneic Anti-CD19 CAR T-cells ALLO-501A", - "Olvimulogene Nanivacirepvec", - "Thymidylate Synthase Inhibitor DFP-11207", - "Multi-mode Kinase Inhibitor EOC317", - "Yttrium Y 90 Anti-CD19 Monoclonal Antibody BU12", - "Autologous ROR2-targeted CAR T-cells CCT301-59", - "NY-ESO-B", - "Monoclonal Antibody IMMU-14", - "Anti-ENPP3 Antibody-Drug Conjugate AGS-16C3F", - "Inalimarev", - "Selective Estrogen Receptor Degrader LSZ102", - "P-cadherin Antagonist PF-03732010", - "Utomilumab", - "Elinafide", - "Autologous Anti-CD19CAR-HER2t/CD22CAR-EGFRt-expressing T-cells", - "dUTPase/DPD Inhibitor TAS-114", - "Autologous Anti-BCMA CAR-transduced T-cells KITE-585", - "Pyrazoloacridine", - "Recombinant Bacterial Minicells VAX014", - "Anti-PD-L1 Monoclonal Antibody MSB2311", - "Cyclodisone", - "Enadenotucirev", - "Resveratrol Formulation SRT501", - "Bispecific Antibody AGEN1223", - "Carboxyamidotriazole", - "Anti-TGF-beta Monoclonal Antibody NIS793", - "Pegylated Liposomal Belotecan", - "CCR4 Inhibitor FLX475", - "Gataparsen Sodium", - "CTLA-4-directed Probody BMS-986249", - "Elbasvir/Grazoprevir", - "mRNA-based Tumor-specific Neoantigen Boosting Vaccine GRT-R902", - "Akt Inhibitor SR13668", - "Sizofiran", - "Atiprimod Dimaleate", - "Liposomal Vinorelbine Tartrate", - "Tiazofurin", - "Antibody-drug Conjugate MEDI7247", - "Vonlerolizumab", - "Liarozole", - "Recombinant Transforming Growth Factor-Beta", - "Broxuridine", - "Anti-PD-1 Monoclonal Antibody 609A", - "Autologous Tumor Infiltrating Lymphocytes LN-145", - "Pictilisib", - "Anti-NRP1 Antibody ASP1948", - "Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody PF-06863135", - "Anti-HER2 Bispecific Antibody-drug Conjugate ZW49", - "Anti-MAGE-A4 T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-C103C", - "Aspacytarabine", - "PARP7 Inhibitor RBN-2397", - "Liposomal Rhenium Re 186", - "Pamidronate Disodium", - "Erastin Analogue PRLX 93936", - "Ralaniten Acetate", - "Cantrixil", - "Pemigatinib", - "Bushen Culuan Decoction", - "Bushen-Jianpi Decoction", - "Rilimogene Glafolivec", - "Human Papillomavirus 16 E7 Peptide/Padre 965.10", - "Triciribine Phosphate", - "Ranpirnase", - "2;6-Diaminopurine", - "Broad-Spectrum Human Papillomavirus Vaccine V505", - "Selinexor", - "Yttrium Y 90-DOTA-Biotin", - "ERK1/2 Inhibitor JSI-1187", - "Pacmilimab", - "Thymopentin", - "Silicon Phthalocyanine 4", - "Anti-CTLA-4 Monoclonal Antibody BCD-145", - "Anti-PD-1 Monoclonal Antibody F520", - "Anti-PD-L1 Monoclonal Antibody ZKAB001", - "Anti-PD-1/Anti-HER2 Bispecific Antibody IBI315", - "Plitidepsin", - "Selective Human Estrogen-receptor Alpha Partial Agonist TTC-352", - "Cyproterone", - "Src/Abl Kinase Inhibitor AZD0424", - "Tubulin Inhibitor ALB 109564 Dihydrochloride", - "Agerafenib", - "Dynemicin A", - "Sparfosic Acid", - "Tarenflurbil", - "Anti-CLEVER-1 Monoclonal Antibody FP-1305", - "HDAC Inhibitor MPT0E028", - "Anti-BCMA/CD3 BiTE Antibody AMG 701", - "7-Ethyl-10-Hydroxycamptothecin", - "Epirubicin Hydrochloride", - "Eribulin", - "Individualized MVA-based Vaccine TG4050", - "Entinostat", - "APE1/Ref-1 Redox Inhibitor APX3330", - "Essiac", - "Polo-like Kinase 1 Inhibitor GSK461364", - "Monoclonal Antibody Hu3S193", - "PI3K-delta Inhibitor SHC014748M", - "Seclidemstat", - "Epitinib Succinate", - "Nirogacestat", - "Anti-ANG2 Monoclonal Antibody MEDI-3617", - "Docetaxel Polymeric Micelles", - "OPCs/Green Tea/Spirullina/Curcumin/Antrodia Camphorate/Fermented Soymilk Extract Capsule", - "Anti-FLT3 Antibody-drug Conjugate AGS62P1", - "Oleandrin", - "Menogaril", - "Anetumab Ravtansine", - "Diarylsulfonylurea Compound ILX-295501", - "Anti-TWEAK Monoclonal Antibody RG7212", - "Nimotuzumab", - "Etoposide Phosphate", - "Anti-integrin Beta-6/MMAE Antibody-drug Conjugate SGN-B6A", - "Anti-CTLA-4 Monoclonal Antibody ADG116", - "Lexibulin", - "Recombinant Human Adenovirus Type 5 H101", - "Adenoviral PSA Vaccine ETBX-071", - "Anti-c-fms Monoclonal Antibody AMG 820", - "Oral Fludarabine Phosphate", - "mRNA-derived Prostate Cancer Vaccine CV9104", - "Recombinant Tumor Necrosis Factor-Alpha", - "Sodium Iodide I-131", - "Cevostamab", - "IL-12-expressing Mesenchymal Stem Cell Vaccine GX-051", - "Tocotrienol", - "Parvovirus H-1", - "Anti-VEGFR3 Monoclonal Antibody IMC-3C5", - "ERK Inhibitor CC-90003", - "Pan-VEGFR/TIE2 Tyrosine Kinase Inhibitor CEP-11981", - "Astuprotimut-R", - "iPSC-derived Natural Killer Cells FT500", - "Rogaratinib", - "Pazopanib Hydrochloride", - "Anti-claudin18.2 Monoclonal Antibody AB011", - "Roneparstat", - "Samuraciclib", - "2;6-Dimethoxyquinone", - "Alsevalimab", - "Etaracizumab", - "Tegafur-gimeracil-oteracil Potassium", - "Tomaralimab", - "LSD1 Inhibitor CC-90011", - "Nicotinamide Riboside", - "Isobrucein B", - "Cisplatin", - "Recombinant Luteinizing Hormone", - "RNR Inhibitor COH29", - "Trigriluzole", - "Glutathione Pegylated Liposomal Doxorubicin Hydrochloride Formulation 2B3-101", - "Thorium Th 227 Anti-PSMA Monoclonal Antibody BAY 2315497", - "ERa36 Modulator Icaritin", - "CSF1R Inhibitor ABSK021", - "Triaziquone", - "Anti-PD-L1 Monoclonal Antibody TG-1501", - "Taltobulin", - "G-Quadruplex Stabilizer BMVC", - "Anti-OX40 Agonist Monoclonal Antibody BGB-A445", - "Anti-VEGFR2 Monoclonal Antibody HLX06", - "Cisplatin/Vinblastine/Cell Penetration Enhancer Formulation INT230-6", - "Foritinib Succinate", - "Lintuzumab", - "Tetraphenyl Chlorin Disulfonate", - "TLR7/8/9 Antagonist IMO-8400", - "Transdermal 17beta-Estradiol Gel BHR-200", - "Fursultiamine", - "Ritrosulfan", - "Thioinosine", - "Bexarotene", - "Antibody-drug Conjugate ABBV-838", - "Tolnidamine", - "Tretinoin", - "Anti-PSMA/CD3 Monoclonal Antibody MOR209/ES414", - "Anti-CSF1R Monoclonal Antibody SNDX-6352", - "Alpha-lactalbumin-derived Synthetic Peptide-lipid Complex Alpha1H", - "Carmustine Implant", - "Empesertib", - "Liposome-encapsulated Daunorubicin-Cytarabine", - "Mipsagargin", - "Albumin-binding Cisplatin Prodrug BTP-114", - "Terfluranol", - "Tisagenlecleucel", - "Mcl-1 Inhibitor MIK665", - "Gemcitabine-Phosphoramidate Hydrochloride NUC-1031", - "Herba Scutellaria Barbata", - "Obatoclax Mesylate", - "Mannosulfan", - "Recombinant PRAME Protein Plus AS15 Adjuvant GSK2302025A", - "Antibody-drug Conjugate SC-007", - "Leucovorin", - "Aurora B/C Kinase Inhibitor GSK1070916A", - "Talotrexin Ammonium", - "Squalamine Lactate", - "Lapachone", - "PGLA/PEG Copolymer-Based Paclitaxel", - "Pexmetinib", - "Fulvestrant", - "Selective Estrogen Receptor Degrader LY3484356", - "Anti-HER2 Antibody-drug Conjugate DP303c", - "Pilaralisib", - "Anti-GITR Monoclonal Antibody GWN 323", - "Monoclonal Antibody SGN-14", - "Botanical Agent LEAC-102", - "Vitamin E Compound", - "Antibody-drug Conjugate ABBV-011", - "Spiroplatin", - "Clostridium Novyi-NT Spores", - "Golvatinib", - "Autologous Anti-CD19/CD22 CAR T-cells AUTO3", - "Ladirubicin", - "Long-acting Release Pasireotide", - "Entospletinib", - "Nanoparticle-based Paclitaxel Suspension", - "Anlotinib Hydrochloride", - "Interferon Gamma-1b", - "Leurubicin", - "Liposomal Mitoxantrone Hydrochloride", - "Vitamin D3 Analogue ILX23-7553", - "Dacomitinib", - "Elesclomol Sodium", - "HuaChanSu", - "Canfosfamide", - "Transdermal 4-Hydroxytestosterone", - "Aminopterin Sodium", - "Umbralisib", - "Recombinant Bispecific Single-Chain Antibody rM28", - "Tyrosinase Peptide", - "Yttrium Y 90 Anti-CEA Monoclonal Antibody cT84.66", - "Micellar Nanoparticle-encapsulated Epirubicin", - "Doxorubicin Prodrug/Prodrug-activating Biomaterial SQ3370", - "Anti-CD352 Antibody-drug Conjugate SGN-CD352A", - "Anti-PRL-3 Monoclonal Antibody PRL3-zumab", - "Pegaspargase", - "WT1/PSMA/hTERT-encoding Plasmid DNA INO-5401", - "Membrane-Disrupting Peptide EP-100", - "Duvortuxizumab", - "Asparaginase", - "CDK/JAK2/FLT3 Inhibitor TG02 Citrate", - "pan-PIM Kinase Inhibitor NVP-LGB-321", - "Anti-TIM-3 Monoclonal Antibody TSR-022", - "2-Hydroxyflutamide Depot", - "2-Deoxy-D-glucose", - "Anti-Globo H/MMAE Antibody-drug Conjugate OBI 999", - "Oltipraz", - "Timonacic", - "Autologous Anti-BCMA-CAR-expressing CD4+/CD8+ T-lymphocytes FCARH143", - "Gossypol Acetic Acid", - "Streptonigrin", - "SERD ZN-c5", - "JAK1 Inhibitor INCB052793", - "Anti-PD-1 Monoclonal Antibody MEDI0680", - "Peplomycin Sulfate", - "eIF4E Antisense Oligonucleotide ISIS 183750", - "Recombinant Human Papillomavirus Nonavalent Vaccine", - "Zoptarelin Doxorubicin", - "CD44v6-specific CAR T-cells", - "Ditiocarb", - "Quinacrine Hydrochloride", - "BET Inhibitor GSK2820151", - "Anti-PD-L1/CD137 Bispecific Antibody MCLA-145", - "EP2/EP4 Antagonist TPST-1495", - "Tasisulam Sodium", - "Wobe-Mugos E", - "Anti-EGFRvIII Immunotoxin MR1-1", - "Palladium Pd-103", - "Chlorozotocin", - "Conbercept", - "Lutetium Lu 177 Satoreotide Tetraxetan", - "Actinium Ac 225 Lintuzumab", - "Iodine I 131 TM-601", - "Monoclonal Antibody TRK-950", - "HIF-1alpha Inhibitor PX-478", - "Metamelfalan", - "Therapeutic Angiotensin-(1-7)", - "Taurultam", - "TGFbeta Inhibitor LY3200882", - "MetAP2 Inhibitor SDX-7320", - "BCG Vaccine", - "MAGE-10.A2", - "PI3K/mTOR/ALK-1/DNA-PK Inhibitor P7170", - "Mitotane", - "Crizotinib", - "Thioredoxin-1 Inhibitor PX-12", - "Digitoxin", - "2-Methoxyestradiol", - "Adenovirus 5/F35-Human Guanylyl Cyclase C-PADRE", - "Linsitinib", - "PARP Inhibitor NMS-03305293", - "Tepotinib", - "Gelonin", - "Tucidinostat", - "Autologous Anti-HLA-A*02/AFP TCRm-expressing T-cells ET140202", - "Trastuzumab Duocarmazine", - "Bcl-2 Inhibitor LP-108", - "Anti-EGFR/c-Met Bispecific Antibody JNJ-61186372", - "Iodine I 131 IPA", - "Topotecan Hydrochloride Liposomes", - "Napabucasin", - "Akt Inhibitor MK2206", - "WT1 Peptide Vaccine WT2725", - "Anti-PD-1 Monoclonal Antibody TSR-042", - "Namirotene", - "Anti-LAG3 Monoclonal Antibody TSR-033", - "Onartuzumab", - "Shared Anti-Idiotype-AB-S006", - "WT1 Protein-derived Peptide Vaccine DSP-7888", - "Ansamitomicin P-3", - "Camptothecin Analogue TLC388", - "Anti-CD205 Antibody-drug Conjugate OBT076", - "Panitumumab", - "Monoclonal Antibody L6", - "STING Agonist TAK-676", - "Burixafor Hydrobromide", - "Belvarafenib", - "Doxorubicin-Magnetic Targeted Carrier Complex", - "Aphidicoline Glycinate", - "BTK Inhibitor ARQ 531", - "Dabrafenib Mesylate", - "Iodine I 131 Monoclonal Antibody 81C6", - "Seribantumab", - "Mitoflaxone", - "PIM Kinase Inhibitor LGH447", - "Viagenpumatucel-L", - "Etoposide Toniribate", - "Patidegib", - "Metoprine", - "Anti-HER2 Antibody-drug Conjugate A166", - "Anti-HGF Monoclonal Antibody TAK-701", - "Fascin Inhibitor NP-G2-044", - "Mafosfamide", - "Plozalizumab", - "MKC-1", - "Vatalanib", - "Anti-mesothelin-Pseudomonas Exotoxin 24 Cytolytic Fusion Protein LMB-100", - "Fludarabine", - "Ionomycin", - "Antibody-drug Conjugate Anti-TIM-1-vcMMAE CDX-014", - "BMS-184476", - "Aldoxorubicin", - "Epacadostat", - "F16-IL2 Fusion Protein", - "Allodepleted T Cell Immunotherapeutic ATIR101", - "Pancratistatin", - "Anti-EGFRvIII Antibody Drug Conjugate AMG 595", - "Anti-CD30/CD16A Monoclonal Antibody AFM13", - "FAK Inhibitor GSK2256098", - "Aerosol Gemcitabine", - "Elotuzumab", - "Vaccinium myrtillus/Macleaya cordata/Echinacea angustifolia Extract Granules", - "Enzastaurin", - "Anti-PD-1 Monoclonal Antibody MGA012", - "CDK Inhibitor AT7519", - "Lacutamab", - "Anti-ICOS Agonist Monoclonal Antibody BMS-986226", - "Busulfan", - "Caricotamide/Tretazicar", - "PARP 1/2 Inhibitor NOV1401", - "Tesevatinib", - "Tyrosinase", - "Azotomycin", - "Anti-GD2 hu3F8/Anti-CD3 huOKT3 Bispecific Antibody", - "Procaspase Activating Compound-1 VO-100", - "FLT3 Inhibitor SKI-G-801", - "Bendamustine", - "Golnerminogene Pradenovec", - "Rituximab Conjugate CON-4619", - "Neratinib Maleate", - "ITK Inhibitor CPI-818", - "Monoclonal Antibody 11D10", - "Anti-GITR Agonistic Monoclonal Antibody INCAGN01876", - "FMS Inhibitor JNJ-40346527", - "Pentostatin", - "2-Fluoroadenine", - "Anti-PSMA/CD28 Bispecific Antibody REGN5678", - "Etanercept", - "ALK Inhibitor ASP3026", - "Selitrectinib", - "Carfilzomib", - "Anti-CD20 Monoclonal Antibody MIL62", - "Puquitinib Mesylate", - "Glesatinib", - "Multikinase Inhibitor 4SC-203", - "Multipeptide Vaccine S-588210", - "Licartin", - "Aerosolized Liposomal Rubitecan", - "Sho-Saiko-To", - "Birabresib", - "SSTR2-targeting Protein/DM1 Conjugate PEN-221", - "Gentuximab", - "Anti-PD-1/CTLA-4 Bispecific Antibody MEDI5752", - "Dalantercept", - "Mixed Bacteria Vaccine", - "Docetaxel/Ritonavir", - "EGFR T790M Inhibitor HS-10296", - "Olmutinib", - "Testolactone", - "Topoisomerase I Inhibitor LMP776", - "AEE788", - "Berzosertib", - "Anti-EGP-2 Immunotoxin MOC31-PE", - "Idasanutlin", - "Conditionally Active Biologic Anti-AXL Antibody-drug Conjugate BA3011", - "Bendamustine Hydrochloride", - "Jin Fu Kang", - "Mirzotamab Clezutoclax", - "Anti-FAP/Interleukin-2 Fusion Protein RO6874281", - "Tovetumab", - "Sonepcizumab", - "Selumetinib", - "Plocabulin", - "Anti-TIM-3 Monoclonal Antibody Sym023", - "Piritrexim Isethionate", - "Relacorilant", - "North American Ginseng Extract AFX-2", - "Lerociclib", - "Anti-CD33/CD3 Bispecific Antibody GEM 333", - "Multitargeted Tyrosine Kinase Inhibitor JNJ-26483327", - "Pan-RAR Agonist/AP-1 Inhibitor LGD 1550", - "Pasotuxizumab", - "E2F1 Pathway Activator ARQ 171", - "Nucleotide Analogue GS 9219", - "Anti-TIGIT Monoclonal Antibody BGB-A1217", - "Ripertamab", - "Antineoplastic Vaccine GV-1301", - "Trodusquemine", - "Endothelin Receptor Type A Antagonist YM598", - "Interleukin-2 Liposome", - "Custirsen Sodium", - "Rucaparib Camsylate", - "Enloplatin", - "Itacitinib Adipate", - "PD-1 Directed Probody CX-188", - "Dexamethason", - "Methazolamide", - "Bromebric Acid", - "Copper Gluconate", - "Anti-EGFR/DM1 Antibody-drug Conjugate AVID100", - "Degarelix Acetate", - "Repotrectinib", - "LSD1 Inhibitor IMG-7289", - "Aminopterin", - "mTOR Kinase Inhibitor AZD8055", - "Methotrexate Sodium", - "Picoplatin", - "Irinotecan", - "Racemetyrosine/Methoxsalen/Phenytoin/Sirolimus SM-88", - "Apatorsen", - "Cereblon Modulator CC-90009", - "Selpercatinib", - "Ingenol Mebutate Gel", - "Anti-Ganglioside GM2 Monoclonal Antibody BIW-8962", - "Anti-CD19 Monoclonal Antibody XmAb5574", - "Receptor Tyrosine Kinase Inhibitor R1530", - "Dihydrolenperone", - "Sparfosate Sodium", - "P-p68 Inhibitor RX-5902", - "Trabectedin", - "Vorinostat", - "Anti-ErbB3/Anti-IGF-1R Bispecific Monoclonal Antibody MM-141", - "PRAME-targeting T-cell Receptor/Inducible Caspase 9 BPX-701", - "Lazertinib", - "Autologous CD20-4SCAR-expressing T-cells 4SCAR20", - "Crystalline Genistein Formulation AXP107-11", - "Retifanlimab", - "Daporinad", - "BET Inhibitor CC-90010", - "Melapuldencel-T", - "Nanoparticle-encapsulated Doxorubicin Hydrochloride", - "Folitixorin", - "Dichloroallyl Lawsone", - "Androgen Receptor Antisense Oligonucleotide EZN-4176", - "Anti-CD38 Monoclonal Antibody MOR03087", - "Depatuxizumab Mafodotin", - "Rociletinib", - "cis-Urocanic Acid", - "MET Tyrosine Kinase Inhibitor SGX523", - "Milataxel", - "Melphalan Flufenamide", - "Carbendazim", - "Trans Sodium Crocetinate", - "Anti-CEACAM5 Antibody-Drug Conjugate SAR408701", - "SERD D-0502", - "Moxetumomab Pasudotox", - "Autologous Tumor Infiltrating Lymphocytes LN-145-S1", - "Tasadenoturev", - "Phytochlorin Sodium-Polyvinylpyrrolidone Complex", - "Dociparstat sodium", - "Domatinostat", - "Sotrastaurin Acetate", - "Dendritic Cell Vaccine", - "Polidocanol", - "Upifitamab", - "Mirabegron", - "Loncastuximab Tesirine", - "PARP Inhibitor AZD2461", - "RSK1-4 Inhibitor PMD-026", - "Diaziquone", - "Fresolimumab", - "Spebrutinib", - "Iodine I 131 Monoclonal Antibody muJ591", - "Pirotinib", - "Uncaria tomentosa Extract", - "BF-200 Gel Formulation", - "Dibrospidium Chloride", - "14C BMS-275183", - "Aurora Kinase Inhibitor SNS-314", - "Survivin Antigen", - "Autologous Multi-lineage Potential Cells", - "Anti-Denatured Collagen Monoclonal Antibody TRC093", - "Anti-CD52 Monoclonal Antibody ALLO-647", - "Beta-lapachone Prodrug ARQ 761", - "MEK/Aurora Kinase Inhibitor BI 847325", - "PI3Kdelta Inhibitor GS-9901", - "Recombinant Human 6Ckine", - "Methionine Aminopeptidase 2 Inhibitor M8891", - "Asulacrine Isethionate", - "Checkpoint Kinase Inhibitor AZD7762", - "Ormaplatin", - "Simmitinib", - "Anti-ICOS Monoclonal Antibody MEDI-570", - "Anti-FGFR2 Antibody BAY1179470", - "PI3K Alpha/Beta Inhibitor BAY1082439", - "Anti-IL-15 Monoclonal Antibody AMG 714", - "Trimelamol", - "Anti-TIM-3 Monoclonal Antibody BGB-A425", - "Muscadine Grape Extract", - "Pixantrone Dimaleate", - "Autologous BCMA-targeted CAR T Cells LCAR-B4822M", - "Tisotumab Vedotin", - "Seliciclib", - "Sergiolide", - "Eniluracil/5-FU Combination Tablet", - "Pinometostat", - "Figitumumab", - "Qilisheng Immunoregulatory Oral Solution", - "Cintredekin Besudotox", - "Inotuzumab Ozogamicin", - "Lutetium Lu 177-Edotreotide", - "Bisthianostat", - "Lutetium Lu 177-PSMA-617", - "Tucatinib", - "Laetrile", - "Resiquimod", - "Dubermatinib", - "NY-ESO-1 Plasmid DNA Cancer Vaccine pPJV7611", - "MVA Tumor-specific Neoantigen Boosting Vaccine MVA-209-FSP", - "Pazopanib", - "PKC-beta Inhibitor MS-553", - "Toremifene", - "PBN Derivative OKN-007", - "Cedazuridine/Azacitidine Combination Agent ASTX030", - "DNA Plasmid-encoding Interleukin-12 INO-9012/PSA/PSMA DNA Plasmids INO-5150 Formulation INO-5151", - "Topotecan", - "Autologous Bispecific CD19/CD22-targeted CAR-T Cells GC022", - "Dihydro-5-Azacytidine", - "Protein Kinase C Inhibitor IDE196", - "Bactobolin", - "Ethinyl Estradiol", - "DAB389 Epidermal Growth Factor", - "Tirapazamine", - "2'-F-ara-deoxyuridine", - "Rivoceranib Mesylate", - "Everolimus Tablets for Oral Suspension", - "MEK Inhibitor TAK-733", - "ALK/ROS1/Met Inhibitor TQ-B3101", - "Anti-PD-L1 Monoclonal Antibody MDX-1105", - "Lapatinib", - "Autologous Anti-CD123 CAR-T Cells", - "DPT/Typhoid/Staphylococcus aureus/Paratyphoid A/Paratyphoid B Vaccine", - "Anti-HER2-DM1 ADC B003", - "Matrix Metalloproteinase Inhibitor MMI270", - "Plasmid DNA Vaccine pING-hHER3FL", - "Pumitepa", - "Mannosylerythritol Lipid", - "EGFR/FLT3/Abl Inhibitor SKLB1028", - "Anti-C-met Monoclonal Antibody SAIT301", - "Tezacitabine Anhydrous", - "Topical Betulinic Acid", - "Oral Ixabepilone", - "Anti-TRAILR2/CDH17 Tetravalent Bispecific Antibody BI 905711", - "Betaglucin Gel", - "Fedratinib Hydrochloride", - "Oncolytic Measles Virus Encoding Helicobacter pylori Neutrophil-activating Protein", - "Capecitabine Rapidly Disintegrating Tablet", - "Liposomal Topotecan FF-10850", - "Talazoparib", - "Anti-CD137 Agonistic Monoclonal Antibody ADG106", - "Interleukin-12-Fc Fusion Protein DF6002", - "CD28/ICOS Antagonist ALPN-101", - "Anti-HB-EGF Monoclonal Antibody KHK2866", - "Nifurtimox", - "Clioquinol", - "Anti-c-MET Monoclonal Antibody LY2875358", - "Bleomycin", - "BET Inhibitor FT-1101", - "Crenolanib Besylate", - "Losoxantrone", - "Ribociclib", - "Dezapelisib", - "Oportuzumab Monatox", - "Elesclomol", - "BMS-188797", - "Anti-PSCA Monoclonal Antibody AGS-1C4D4", - "Flt3 Ligand/Anti-CTLA-4 Antibody/IL-12 Engineered Oncolytic Vaccinia Virus RIVAL-01", - "Sodium Stibogluconate", - "Hypericin", - "PEG-PEI-cholesterol Lipopolymer-encased IL-12 DNA Plasmid Vector GEN-1", - "Not Otherwise Specified", - "Anti-CD73 Monoclonal Antibody NZV930", - "Bevacizumab", - "Salirasib", - "Brivudine", - "Galectin Inhibitor GR-MD-02", - "Andrographolide", - "Anti-CD40 Agonist Monoclonal Antibody CDX-1140", - "Amsilarotene", - "Anti-TIM-3 Monoclonal Antibody INCAGN02390", - "Spanlecortemlocel", - "Flt3/MerTK Inhibitor MRX-2843", - "Bcl-2 Inhibitor BGB-11417", - "PH20 Hyaluronidase-expressing Adenovirus VCN-01", - "6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatases Isoform 3 Inhibitor ACT-PFK-158", - "TLR7 Agonist 852A", - "Dendritic Cell-targeting Lentiviral Vector ID-LV305", - "Hsp90 Inhibitor BIIB021", - "Mistletoe Extract", - "mTOR1/2 Kinase Inhibitor ME-344", - "Anti-CD40 Monoclonal Antibody SEA-CD40", - "Bovine Cartilage", - "c-Kit Inhibitor PLX9486", - "Histone-Lysine N-Methyltransferase EZH2 Inhibitor GSK2816126", - "Anti-BTLA Monoclonal Antibody TAB004", - "Esorubicin Hydrochloride", - "DKK1-Neutralizing Monoclonal Antibody DKN-01", - "Anti-CD44 Monoclonal Antibody RO5429083", - "CYL-02 Plasmid DNA", - "Anti-CTLA-4/Anti-PD-1 Monoclonal Antibody Combination BCD-217", - "Acalisib", - "Aderbasib", - "Anti-CD20 Monoclonal Antibody-Interferon-alpha Fusion Protein IGN002", - "Epcoritamab", - "Liposomal Irinotecan", - "Ganglioside GD2", - "Adenosine A2A Receptor Antagonist AZD4635", - "ALK-FAK Inhibitor CEP-37440", - "CDK4 Inhibitor P1446A-05", - "Mercaptopurine", - "Merestinib", - "Topoisomerase I/II Inhibitor NEV-801", - "Edotecarin", - "Src Kinase Inhibitor AP 23846", - "Copanlisib", - "Rovalpituzumab Tesirine", - "Tislelizumab", - "Nab-paclitaxel/Rituximab-coated Nanoparticle AR160", - "VEGFR/PDGFR Tyrosine Kinase Inhibitor TAK-593", - "TLR8 Agonist DN1508052", - "Pomegranate Juice", - "Resiquimod Topical Gel", - "Larotrectinib Sulfate", - "Anti-CD37 Bispecific Monoclonal Antibody GEN3009", - "Oprozomib", - "Bruceanol B", - "SHP2 Inhibitor RLY-1971", - "Anti-LAG3 Monoclonal Antibody BI 754111", - "AXL Inhibitor SLC-391", - "Anti-CD123 x Anti-CD3 Bispecific Antibody XmAb1404", - "Anti-TGF-beta Monoclonal Antibody SAR-439459", - "Afimoxifene", - "FLT3/ABL/Aurora Kinase Inhibitor KW-2449", - "Hu14.18-IL2 Fusion Protein EMD 273063", - "Peplomycin", - "Imipramine Blue", - "Scopoletin", - "siG12D LODER", - "Tanomastat", - "Vantictumab", - "unknown", - "Anti-CD73 Monoclonal Antibody TJ4309", - "Glucarpidase", - "Anti-HER-2 Bispecific Antibody KN026", - "CSF1R Inhibitor DCC-3014", - "Liothyronine Sodium", - "Long Peptide Vaccine 7", - "Metformin Hydrochloride", - "Anaxirone", - "Epirubicin", - "pan-RAF Inhibitor LXH254", - "Rogletimide", - "TLR7 agonist BNT411", - "TORC1/2 Kinase Inhibitor DS-3078a", - "Adenovirus Serotype 26-expressing HPV18 Vaccine JNJ-63682931", - "Anti-TIGIT Monoclonal Antibody OMP-313M32", - "Favezelimab", - "Lanreotide Acetate", - "EZH2 Inhibitor SHR2554", - "Paclitaxel Liposome", - "Anti-CTLA-4/LAG-3 Bispecific Antibody XmAb22841", - "Anti-CD137 Agonistic Monoclonal Antibody CTX-471", - "Mitazalimab", - "Yiqi-yangyin-jiedu Herbal Decoction", - "Anti-CD30/DM1 Antibody-drug Conjugate F0002", - "EGFR Inhibitor BIBX 1382", - "Lumretuzumab", - "Sipuleucel-T", - "Anti-DLL3/CD3 BiTE Antibody AMG 757", - "ATR Kinase Inhibitor BAY1895344", - "Autologous Bispecific BCMA/CD19-targeted CAR-T Cells GC012F", - "Autologous Dendritic Cell-based Immunotherapeutic AV0113", - "Famitinib", - "Imetelstat Sodium", - "Niraparib Tosylate Monohydrate", - "Paclitaxel Poliglumex", - "Polo-like Kinase 1 Inhibitor NMS-1286937", - "Valrubicin", - "Methylprednisolone", - "Apoptosis Inducer GCS-100", - "Recombinant Interleukin-13", - "Spongistatin", - "Platinum Compound", - "Simalikalactone D", - "Troxacitabine", - "IDO Peptide Vaccine IO102", - "Magrolimab", - "Enterococcus gallinarum Strain MRx0518", - "Nocodazole", - "Recombinant Erwinia asparaginase JZP-458", - "RET Inhibitor DS-5010", - "Monalizumab", - "Teloxantrone Hydrochloride", - "Lenvatinib Mesylate", - "Anti-CD123/CD3 Bispecific Antibody APVO436", - "Iodine I 125-Anti-EGFR-425 Monoclonal Antibody", - "Tositumomab", - "Cationic Peptide Cream Cypep-1", - "Methyltestosterone", - "Amustaline", - "IL-2 Recombinant Fusion Protein ALT-801", - "Glutaminase Inhibitor IPN60090", - "Sugemalimab", - "MEK inhibitor CS3006", - "PV-10", - "Telapristone", - "Anti-CD19/Anti-CD22 Bispecific Immunotoxin DT2219ARL", - "Ficlatuzumab", - "N-Methylformamide", - "Roniciclib", - "Codrituzumab", - "Carubicin Hydrochloride", - "Bempegaldesleukin", - "Anti-BTN3A Agonistic Monoclonal Antibody ICT01", - "Androgen Receptor Antagonist TRC253", - "Nanatinostat", - "Aniline Mustard", - "Cereblon E3 Ubiquitin Ligase Modulating Agent CC-92480", - "UAE Inhibitor TAK-243", - "SNS01-T Nanoparticles", - "Magnesium Valproate", - "Anti-Tissue Factor Monoclonal Antibody MORAb-066", - "Antroquinonol Capsule", - "Echinomycin", - "SLC6A8 Inhibitor RGX-202", - "Etigilimab", - "Bruceanol F", - "Ruthenium Ru-106", - "Trebananib", - "Exemestane", - "Autologous Rapamycin-resistant Th1/Tc1 Cells RAPA-201", - "Amsacrine Lactate", - "Monoclonal Antibody 81C6", - "TLR9 Agonist AST-008", - "Hydroxyprogesterone Caproate", - "Clodronic Acid", - "Antitumor B Key Active Component-alpha", - "Dianhydrogalactitol", - "Altiratinib", - "Silibinin", - "Carzinophilin", - "Anti-CD3/Anti-5T4 Bispecific Antibody GEN1044", - "Monoclonal Antibody F19", - "Monoclonal Antibody muJ591", - "Anti-CD19 Monoclonal Antibody MDX-1342", - "Parsaclisib Hydrochloride", - "Docetaxel-loaded Nanopharmaceutical CRLX301", - "PARP-1/2 Inhibitor ABT-767", - "Semuloparin", - "Pan-KRAS Inhibitor BI 1701963", - "Binetrakin", - "Cyclophosphamide", - "Darinaparsin", - "Cytarabine-asparagine Prodrug BST-236", - "ISS 1018 CpG Oligodeoxynucleotide", - "Taxol Analogue SID 530", - "SLCT Inhibitor GNS561", - "Anti-LAG3 Monoclonal Antibody MK-4280", - "Anti-PD1 Monoclonal Antibody AGEN2034", - "VEGFR-2 DNA Vaccine VXM01", - "Paricalcitol", - "Daunorubicin Citrate", - "Porcupine Inhibitor XNW7201", - "DACH-Platin Micelle NC-4016", - "OX40L-expressing Oncolytic Adenovirus DNX-2440", - "CD44 Targeted Agent SPL-108", - "USP14/UCHL5 Inhibitor VLX1570", - "Anti-Ribonucleoprotein Antibody ATRC-101", - "Citatuzumab Bogatox", - "Gatipotuzumab", - "Omipalisib", - "Rodorubicin", - "Interferon", - "Xiliertinib", - "Cytarabine Monophosphate Prodrug MB07133", - "Anti-PD-1 Monoclonal Antibody HLX10", - "ALK/TRK Inhibitor TSR-011", - "Briciclib Sodium", - "Smoothened Antagonist LDE225 Topical", - "Allogeneic Anti-CD20-CAR T-cells PBCAR20A", - "Vismodegib", - "Anti-C5aR Monoclonal Antibody IPH5401", - "Dexamethasone", - "LMP7 Inhibitor M3258", - "Sitravatinib", - "Brentuximab Vedotin", - "Donafenib", - "Pan HER/VEGFR2 Receptor Tyrosine Kinase Inhibitor BMS-690514", - "Zorifertinib", - "CD40 Agonistic Monoclonal Antibody APX005M", - "Pegylated Liposomal Doxorubicin Hydrochloride", - "Synthetic Long HPV16 E6/E7 Peptides Vaccine ISA101b", - "CXCR4/E-selectin Antagonist GMI-1359", - "Daratumumab", - "p53/HDM2 Interaction Inhibitor CGM097", - "Cetrelimab", - "Leuprolide", - "Rosiglitazone Maleate", - "Shark Cartilage", - "Human Combinatorial Antibody Library-based Monoclonal Antibody VAY736", - "Pan-mutation-selective EGFR Inhibitor CLN-081", - "Daniquidone", - "Anti-HER2/Auristatin Payload Antibody-drug Conjugate XMT-1522", - "Elgemtumab", - "Anti-CA6-DM4 Immunoconjugate SAR566658", - "Iroplact", - "Ixabepilone", - "Sapanisertib", - "Tubulin Binding Agent TTI-237", - "Anti-FLT3 Monoclonal Antibody 4G8-SDIEM", - "Binimetinib", - "Imalumab", - "Trimeric GITRL-Fc OMP-336B11", - "Monoclonal Antibody AbGn-7", - "NA17.A2 Peptide Vaccine", - "Trastuzumab/Hyaluronidase-oysk", - "Anti-mesothelin/MMAE Antibody-drug Conjugate RC88", - "Laromustine", - "Rice Bran", - "Selective Estrogen Receptor Degrader SRN-927", - "Futuximab/Modotuximab Mixture", - "Autologous CD19 CAR-expressing CD4+/CD8+ T-cells MB-CART19.1", - "Pan-IDH Mutant Inhibitor AG-881", - "Gold Sodium Thiomalate", - "Mogamulizumab", - "Cedazuridine", - "Tasisulam", - "Alvespimycin Hydrochloride", - "Gefitinib", - "Buthionine Sulfoximine", - "Nemorubicin", - "Cilengitide", - "RET Mutation/Fusion Inhibitor BLU-667", - "Alkotinib", - "Anti-GITR Agonistic Monoclonal Antibody BMS-986156", - "EP4 Antagonist INV-1120", - "ERK1/2 Inhibitor KO-947", - "Yttrium Y 90-DOTA-di-HSG Peptide IMP-288", - "Anthrapyrazole", - "Anti-GITR Agonistic Monoclonal Antibody ASP1951", - "Abagovomab", - "hTERT-encoding DNA Vaccine INVAC-1", - "Larotrectinib", - "Toll-like Receptor 7 Agonist DSP-0509", - "Anti-IL-13 Humanized Monoclonal Antibody TNX-650", - "LOXL2 Inhibitor PAT-1251", - "Indibulin", - "Losatuxizumab Vedotin", - "Autologous TAAs-loaded Autologous Dendritic Cells AV-GBM-1", - "CBP/beta-catenin Antagonist PRI-724", - "Mesothelin/CD3e Tri-specific T-cell Activating Construct HPN536", - "Anti-C4.4a Antibody-Drug Conjugate BAY1129980", - "CDK2/4/6/FLT3 Inhibitor FN-1501", - "MET Tyrosine Kinase Inhibitor BMS-777607", - "Praluzatamab Ravtansine", - "Pemetrexed", - "Anti-CD20/CD3 Monoclonal Antibody REGN1979", - "Mitosis Inhibitor T 1101 Tosylate", - "Anti-CD123 ADC IMGN632", - "c-Met Inhibitor MK2461", - "Silmitasertib Sodium", - "Anti-NaPi2b Antibody-drug Conjugate XMT-1592", - "Tavolimab", - "Warfarin Sodium", - "Allogeneic CRISPR-Cas9 Engineered Anti-CD70 CAR-T Cells CTX130", - "Ixazomib", - "PD-L1 Inhibitor GS-4224", - "Rituximab", - "Imatinib", - "Verpasep Caltespen", - "Antibody-drug Conjugate SC-002", - "Topotecan Sustained-release Episcleral Plaque", - "Iproplatin", - "Peretinoin", - "Pasireotide", - "CDK2 Inhibitor PF-07104091", - "EZH2 inhibitor CPI-0209", - "Nanoparticle Paclitaxel Ointment SOR007", - "Ambamustine", - "Fisogatinib", - "Fosbretabulin Disodium", - "Amivantamab", - "Dacplatinum", - "R-(-)-Gossypol Acetic Acid", - "Lutetium Lu 177 DOTA-biotin", - "PI3Ka/mTOR Inhibitor PKI-179", - "Pixatimod", - "Oral Pancreatic Cancer Vaccine V3-P", - "Deuterated Enzalutamide", - "Anti-Nucleolin Aptamer AS1411", - "Bleomycin A2", - "Nemorubicin Hydrochloride", - "Smoothened Antagonist LEQ506", - "BTK Inhibitor LOXO-305", - "Alemtuzumab", - "Threonine Tyrosine Kinase Inhibitor CFI-402257", - "Aryl Hydrocarbon Receptor Inhibitor IK-175", - "Quarfloxin", - "Anti-CD45 Monoclonal Antibody AHN-12", - "Teloxantrone", - "Hemiasterlin Analog E7974", - "Pentoxifylline", - "Coxsackievirus A21", - "TLR Agonist BSG-001", - "SHP-1 Agonist SC-43", - "Abexinostat Tosylate", - "Dacarbazine", - "Vorolanib", - "Panobinostat", - "Sapacitabine", - "Orteronel", - "Balstilimab", - "Archexin", - "Autologous Anti-HLA-A*0201/AFP CAR T-cells ET1402L1", - "Atuveciclib", - "Intoplicine", - "Troriluzole", - "Zanubrutinib", - "Enasidenib", - "Exatecan Mesylate", - "Ifetroban", - "Recombinant Human TRAIL-Trimer Fusion Protein SCB-313", - "Apoptosis Inducer BZL101", - "Abarelix", - "Eflornithine Hydrochloride", - "Oral Sodium Phenylbutyrate", - "Tandutinib", - "Vandortuzumab Vedotin", - "CYP11A1 Inhibitor ODM-209", - "Motesanib", - "Tocladesine", - "Benzoylphenylurea", - "Belzutifan", - "PI3K/mTORC1/mTORC2 Inhibitor DCBCI0901", - "Prostate Cancer Vaccine ONY-P1", - "Enzalutamide", - "CDK4/6 Inhibitor FCN-437", - "Poziotinib", - "Anti-GPR20/DXd Antibody-drug Conjugate DS-6157a", - "Adenovirus-mediated Human Interleukin-12 INXN-2001 Plus Activator Ligand INXN-1001", - "Anti-PTK7/Auristatin-0101 Antibody-drug Conjugate PF-06647020", - "Refametinib", - "Lapatinib Ditosylate", - "mTOR Kinase Inhibitor CC-223", - "Autologous Anti-CD19 CAR-4-1BB-CD3zeta-expressing T-cells CNCT19", - "Pan-AKT Kinase Inhibitor GSK690693", - "SR-BP1/HSI Inhibitor SR31747A", - "pan-PIM Kinase Inhibitor AZD1208", - "Adenovector-transduced AP1903-inducible MyD88/CD40-expressing Autologous PSMA-specific Prostate Cancer Vaccine BPX-201", - "Autologous MAGE-A3/A6-specific TCR Gene-engineered Lymphocytes KITE-718", - "Anti-HER2 Antibody-drug Conjugate ARX788", - "Folate Receptor-Targeted Vinca Alkaloid/Mitomycin C EC0225", - "PLK1 Inhibitor CYC140", - "Anti-CD19 iCAR NK Cells", - "Autologous Anti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressing CD4+/CD8+ Central Memory T-lymphocytes JCAR014", - "Sialyl Tn Antigen", - "Lifirafenib", - "BRAF Inhibitor ARQ 736", - "Anti-gpA33/CD3 Monoclonal Antibody MGD007", - "Fludarabine Phosphate", - "DNA-PK/TOR Kinase Inhibitor CC-115", - "MAT2A Inhibitor AG-270", - "Allogeneic Melanoma Vaccine AGI-101H", - "Anti-CD137 Agonistic Monoclonal Antibody AGEN2373", - "Cabiralizumab", - "Durvalumab", - "Encapsulated Rapamycin", - "Epipropidine", - "Anti-PSMA Monoclonal Antibody MDX1201-A488", - "Interferon-gamma-expressing Adenovirus Vaccine ASN-002", - "Pan-RAF Inhibitor LY3009120", - "Pevonedistat", - "Telaglenastat Hydrochloride", - "Pravastatin Sodium", - "Tigatuzumab", - "Anti-PSMA Monoclonal Antibody-MMAE Conjugate", - "MEK Inhibitor RO4987655", - "CHK1 Inhibitor MK-8776", - "Daratumumab/rHuPH20", - "Henatinib Maleate", - "Liposomal c-raf Antisense Oligonucleotide", - "Macitentan", - "Rosopatamab", - "Fadrozole Hydrochloride", - "Serclutamab Talirine", - "Liposome-encapsulated RB94 Plasmid DNA Gene Therapy Agent SGT-94", - "IDO1/TDO2 Inhibitor M4112", - "Androgen Receptor Antisense Oligonucleotide AZD5312", - "Simlukafusp Alfa", - "Letetresgene Autoleucel", - "Tapotoclax", - "Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3005", - "Fosbretabulin", - "Sumoylation Inhibitor TAK-981", - "Tris-acryl Gelatin Microspheres", - "Hydroxyurea", - "Ceritinib", - "Allogeneic GM-CSF-secreting Lethally Irradiated Prostate Cancer Vaccine", - "PI3K-delta Inhibitor YY-20394", - "Anti-NY-ESO-1 Immunotherapeutic GSK-2241658A", - "BR96-Doxorubicin Immunoconjugate", - "Amuvatinib Hydrochloride", - "Sabarubicin", - "Vincristine Sulfate Liposome", - "Miransertib", - "Bispecific Antibody GS-1423", - "N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl) Urea", - "Belapectin", - "DNA Plasmid Encoding Interleukin-12 INO-9012", - "Yttrium Y 90-Edotreotide", - "Autologous Prostate Stem Cell Antigen-specific CAR T Cells BPX-601", - "Selumetinib Sulfate", - "HER2 Inhibitor DZD1516", - "Trametinib Dimethyl Sulfoxide", - "Sedoxantrone Trihydrochloride", - "Anti-AGS-5 Antibody-Drug Conjugate ASG-5ME", - "Misonidazole", - "LMP2-specific T Cell Receptor-transduced Autologous T-lymphocytes", - "Personalized Neoantigen Peptide Vaccine iNeo-Vac-P01", - "FGFR1/2/3 Inhibitor HMPL-453", - "Placebo", - "Polo-like Kinase 1 Inhibitor MK1496", - "Larotaxel", - "Filanesib", - "Xevinapant", - "Glyco-engineered Anti-CD20 Monoclonal Antibody CHO H01", - "Autologous Bi-epitope BCMA-targeted CAR T-cells JNJ-68284528", - "Erdafitinib", - "H1299 Tumor Cell Lysate Vaccine", - "PI3K/BET Inhibitor LY294002", - "Anti-KIR Monoclonal Antibody IPH 2101", - "Eribulin Mesylate", - "EGFR Mutant-specific Inhibitor D-0316", - "Bruceanol G", - "Esterified Estrogens", - "Hsp90 Inhibitor SNX-5542 Mesylate", - "Mechlorethamine Hydrochloride", - "Cyclopentenyl Cytosine", - "Polyvalent Melanoma Vaccine", - "Phosphatidylcholine-Bound Silybin", - "PRIMA-1 Analog APR-246", - "Camptothecin Sodium", - "Piroxantrone Hydrochloride", - "Proapoptotic Sulindac Analog CP-461", - "LmddA-LLO-chHER2 Fusion Protein-secreting Live-attenuated Listeria Cancer Vaccine ADXS31-164", - "Pixantrone", - "Sasanlimab", - "Anti-IGF-1R Monoclonal Antibody AVE1642", - "Sodium Dichloroacetate", - "Pegvorhyaluronidase Alfa", - "TP40 Immunotoxin", - "Encelimab", - "Cathelicidin LL-37", - "Eflornithine", - "Bendamustine-containing Nanoparticle-based Formulation RXDX-107", - "Tegafur-Gimeracil-Oteracil Potassium-Leucovorin Calcium Oral Formulation", - "Actinomycin C3", - "Hsp90 Inhibitor SNX-5422 Mesylate", - "Synthetic Long E6/E7 Peptides Vaccine HPV-01", - "CENP-E Inhibitor GSK-923295", - "2-Methoxyestradiol Nanocrystal Colloidal Dispersion", - "Ranimustine", - "Anti-PD-L1 Monoclonal Antibody CS1001", - "Brilanestrant", - "PI3K/mTOR Kinase Inhibitor DS-7423", - "Anti-CD22 Monoclonal Antibody-MMAE Conjugate DCDT2980S", - "Enadenotucirev-expressing FAP/CD3 Bispecific FAP-TAc NG-641", - "Ombrabulin", - "Rexinoid NRX 194204", - "Super Enhancer Inhibitor GZ17-6.02", - "Allogeneic CS1-specific Universal CAR-expressing T-lymphocytes UCARTCS1A", - "Sialyl Tn-KLH Vaccine", - "IAP Inhibitor AT-406", - "Bardoxolone Methyl", - "Anti-EphA2 Monoclonal Antibody-MMAF Immunoconjugate MEDI-547", - "Anti-CD25-PBD Antibody-drug Conjugate ADCT-301", - "Aurora A Kinase Inhibitor LY3295668 Erbumine", - "Anti-PKN3 siRNA Atu027", - "Cergutuzumab Amunaleukin", - "Dual IGF-1R/InsR Inhibitor BMS-754807", - "Extended Release Flucytosine", - "Maraba Oncolytic Virus Expressing Mutant HPV E6/E7", - "Pemetrexed Disodium", - "Zuclomiphene Citrate", - "Triptorelin", - "Botanical Agent BEL-X-HG", - "Betulinic Acid", - "Allogeneic Anti-BCMA/CS1 Bispecific CAR-T Cells", - "Axitinib", - "Darleukin", - "Doxercalciferol", - "Filgotinib", - "Anti-CD22 ADC TRPH-222", - "Berberine Chloride", - "Autologous Anti-CD19 CAR TCR-zeta/4-1BB-transduced T-lymphocytes huCART19", - "Kunecatechins Ointment", - "Elpamotide", - "ALK Inhibitor WX-0593", - "Polymer-conjugated IL-15 Receptor Agonist NKTR-255", - "Tasquinimod", - "Radium Ra 223 Dichloride", - "Vector-peptide Conjugated Paclitaxel", - "Cediranib Maleate", - "Belinostat", - "Lifastuzumab Vedotin", - "Anti-DLL4 Monoclonal Antibody MEDI0639", - "Estradiol Valerate", - "Tallimustine", - "Carotuximab", - "DNA Vaccine VB10.16", - "Namodenoson", - "Anti-CEA/Anti-HSG Bispecific Monoclonal Antibody TF2", - "Liposomal SN-38", - "HER2-targeted Liposomal Doxorubicin Hydrochloride MM-302", - "Polymeric Camptothecin Prodrug XMT-1001", - "Sodium Borocaptate", - "Teglarinad Chloride", - "Enzastaurin Hydrochloride", - "mTOR Kinase Inhibitor PP242", - "Pan-FGFR Inhibitor LY2874455", - "Sustained-release Mitomycin C Hydrogel Formulation UGN-101", - "VEGF/HGF-targeting DARPin MP0250", - "Pingyangmycin", - "Adenosine A2A Receptor Antagonist CS3005", - "WT1 Peptide Vaccine OCV-501", - "Chlorodihydropyrimidine", - "Innate Immunostimulator rBBX-01", - "Adenosine A2B Receptor Antagonist PBF-1129", - "Iodine I 131 Anti-Fibronectin Antibody Fragment L19-SIP", - "Methylselenocysteine", - "IGF-1R Inhibitor", - "Metarrestin", - "Liposomal HPV-16 E6/E7 Multipeptide Vaccine PDS0101", - "Diazooxonorleucine", - "Oral Docetaxel", - "Anti-IL-8 Monoclonal Antibody BMS-986253", - "Dihydroorotate Dehydrogenase Inhibitor AG-636", - "Doxazosin", - "Gallium-based Bone Resorption Inhibitor AP-002", - "SMAC Mimetic BI 891065", - "PI3K/mTOR Kinase Inhibitor PF-04691502", - "Tiragolumab", - "Autologous Anti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressing T-cells AIC100", - "HLA-A*2402-Restricted Multipeptide Vaccine S-488410", - "Talacotuzumab", - "TLR Agonist CADI-05", - "Anti-prolactin Receptor Antibody LFA102", - "Methylprednisolone Acetate", - "FGF/FGFR Pathway Inhibitor E7090", - "Seviteronel", - "MEK-1/MEKK-1 Inhibitor E6201", - "Oxeclosporin", - "STAT Inhibitor OPB-111077", - "Trametinib", - "Anti-EGFR/c-Met Bispecific Antibody EMB-01", - "BCMA/CD3e Tri-specific T-cell Activating Construct HPN217", - "CDK4/6 Inhibitor TQB3616", - "Cycloleucine", - "Dovitinib", - "Prohibitin-Targeting Peptide 1", - "Uroacitides", - "Staphylococcal Enterotoxin B", - "Galeterone", - "TSP-1 Mimetic Fusion Protein CVX-045", - "HER2-targeted DARPin MP0274", - "Atorvastatin Calcium", - "Geranylgeranyltransferase I Inhibitor", - "Hsp90 Antagonist KW-2478", - "Adenoviral MUC1 Vaccine ETBX-061", - "Glioma-associated Peptide-loaded Dendritic Cell Vaccine SL-701", - "Guanabenz Acetate", - "Pyrazinamide", - "Bispecific Antibody MDX447", - "MEK Inhibitor GDC-0623", - "HM2/MMAE Antibody-Drug Conjugate ALT-P7", - "Resistant Starch", - "Rose Bengal Solution PV-10", - "Penicillamine", - "Cyclin-dependent Kinase Inhibitor PF-06873600", - "Human Monoclonal Antibody 216", - "Intetumumab", - "Mutant p53 Activator COTI-2", - "Bis(choline)tetrathiomolybdate", - "Liposomal Docetaxel", - "PIM Kinase Inhibitor TP-3654", - "Autologous BCMA-targeted CAR T Cells CC-98633", - "Ripretinib", - "Synthetic Hypericin", - "Autologous Anti-CD19 TAC-T cells TAC01-CD19", - "IDO1 Inhibitor MK-7162", - "Rilimogene Galvacirepvec", - "ATR Kinase Inhibitor M6620", - "Ladiratuzumab Vedotin", - "Anti-CTLA-4 Probody BMS-986288", - "MELK Inhibitor OTS167", - "Neoantigen-based Melanoma-Poly-ICLC Vaccine", - "Methylcantharidimide", - "12-Allyldeoxoartemisinin", - "Anti-PD-1/CTLA-4 Bispecific Antibody AK104", - "Anti-CXCR4 Monoclonal Antibody PF-06747143", - "Gedatolisib", - "Pioglitazone", - "Vincristine Sulfate", - "Vinflunine", - "Sodium Phenylbutyrate", - "Epothilone KOS-1584", - "Triazene Derivative TriN2755", - "Interleukin-15/Interleukin-15 Receptor Alpha Complex-Fc Fusion Protein XmAb24306", - "MEK Inhibitor AZD8330", - "RARalpha Agonist IRX5183", - "CXCR4 Peptide Antagonist LY2510924", - "Aerosolized Aldesleukin", - "Tubulin Polymerization Inhibitor AEZS 112", - "FASN Inhibitor TVB-2640", - "Irinotecan Hydrochloride", - "Lutetium Lu 177 Lilotomab-satetraxetan", - "Immediate-release Tablet Afuresertib", - "Volociximab", - "Chlorotoxin", - "Androgen Receptor Ligand-binding Domain-encoding Plasmid DNA Vaccine MVI-118", - "Clarithromycin", - "EGFR/HER2 Inhibitor AP32788", - "Rhizoxin", - "Derazantinib", - "Oncolytic HSV-1 NV1020", - "MVX-1-loaded Macrocapsule/autologous Tumor Cell Vaccine MVX-ONCO-1", - "Quizartinib", - "mRNA-based Personalized Cancer Vaccine NCI-4650", - "Multikinase Inhibitor AEE788", - "Polymer-encapsulated Luteolin Nanoparticle", - "Allogeneic Anti-CD19-CAR T-cells PBCAR0191", - "Chromomycin A3", - "Naxitamab", - "Wnt Signaling Inhibitor SM04755", - "Retinol", - "Radgocitabine Hydrochloride", - "Autologous Anti-NY-ESO-1/LAGE-1 TCR-transduced c259 T Lymphocytes GSK3377794", - "Bryostatin 1", - "EGFR Antisense DNA BB-401", - "MEK Inhibitor PD0325901", - "Calcitriol", - "Anti-EGFR/HER2/HER3 Monoclonal Antibody Mixture Sym013", - "Boronophenylalanine-Fructose Complex", - "IDO-1 Inhibitor LY3381916", - "Anti-CD122 Humanized Monoclonal Antibody Mik-Beta-1", - "Prime Cancer Vaccine MVA-BN-CV301", - "Recombinant Interferon Alfa-2a", - "Anti-HIF-1alpha LNA Antisense Oligonucleotide EZN-2968", - "BRD4 Inhibitor PLX2853", - "Cyclophosphamide Anhydrous", - "Vosilasarm", - "Artemisinin Dimer", - "Indatuximab Ravtansine", - "Allogeneic Anti-CD19 Universal CAR-T Cells CTA101", - "Antibody-drug Conjugate SC-003", - "Lyso-Thermosensitive Liposome Doxorubicin", - "Puquitinib", - "Recombinant KSA Glycoprotein CO17-1A", - "Yttrium Y 90 DOTA Anti-CEA Monoclonal Antibody M5A", - "IDH1R132H-Specific Peptide Vaccine PEPIDH1M", - "Tergenpumatucel-L", - "Adenoviral Cancer Vaccine PF-06936308", - "Allogeneic CRISPR-Cas9 Engineered Anti-BCMA T Cells CTX120", - "Alvocidib Prodrug TP-1287", - "Simeprevir", - "Plevitrexed", - "p70S6K Inhibitor LY2584702", - "Acetylcysteine", - "FAP/4-1BB-targeting DARPin MP0310", - "Naptumomab Estafenatox", - "Alpha-tocopheryloxyacetic Acid", - "Docetaxel Nanoparticle CPC634", - "Allogeneic Irradiated Melanoma Cell Vaccine CSF470", - "Edatrexate", - "Recombinant Granulocyte-Macrophage Colony-Stimulating Factor", - "Soy Protein Isolate", - "Ciforadenant", - "Fluorouracil", - "Goserelin Acetate", - "Farletuzumab", - "Polyethylene Glycol Recombinant Endostatin", - "Triamcinolone Acetonide", - "Mercaptopurine Anhydrous", - "Pegzilarginase", - "Linrodostat", - "Broccoli Sprout/Broccoli Seed Extract Supplement", - "Combretastatin", - "Ursolic Acid", - "Rilotumumab", - "2-Ethylhydrazide", - "Breflate", - "Choline Kinase Alpha Inhibitor TCD-717", - "Dolastatin 15", - "EZH1/2 Inhibitor DS-3201", - "Inositol", - "Lucanthone", - "cFMS Tyrosine Kinase Inhibitor ARRY-382", - "Pan-TRK Inhibitor NOV1601", - "DHEA Mustard", - "FAK Inhibitor PF-00562271", - "Infigratinib", - "Lorvotuzumab Mertansine", - "Vibecotamab", - "Vopratelimab", - "Afatinib", - "Quadrivalent Human Papillomavirus (types 6; 11; 16; 18) Recombinant Vaccine", - "Treosulfan", - "Saracatinib", - "Anti-PD-1/Anti-LAG-3 Bispecific Antibody RO7247669", - "Bcl-2 Inhibitor BCL201", - "Axicabtagene Ciloleucel", - "Nimodipine", - "Theramide", - "Anti-BCMA Antibody-drug Conjugate CC-99712", - "EGFR/VEGFR/RET Inhibitor HA121-28", - "Fluoxymesterone", - "Human Monoclonal Antibody B11-hCG Beta Fusion Protein CDX-1307", - "CDK1 Inhibitor BEY1107", - "Cedazuridine/Decitabine Combination Agent ASTX727", - "Anti-BCMA/CD3 BiTE Antibody AMG 420", - "Anti-FLT3/CD3 BiTE Antibody AMG 427", - "Osimertinib", - "Vinfosiltine", - "mRNA-Derived Prostate Cancer Vaccine CV9103", - "Chaparrinone", - "Linifanib", - "Iodine I 131 Monoclonal Antibody CC49-deltaCH2", - "FLT3/KIT Kinase Inhibitor AKN-028", - "Porfimer Sodium", - "Doxorubicin Hydrochloride", - "Lutetium Lu 177-DOTA-EB-TATE", - "Emibetuzumab", - "Metformin", - "Peptichemio", - "Antisense Oligonucleotide GTI-2040", - "KRAS G12C Inhibitor MRTX849", - "Vincristine", - "Bazlitoran", - "7-Cyanoquinocarcinol", - "Anti-LILRB4 Monoclonal Antibody IO-202", - "Chk1 Inhibitor CCT245737", - "Clodronate Disodium", - "Hsp90 Inhibitor AB-010", - "Iloprost", - "Eicosapentaenoic Acid", - "TLR-Directed Cationic Lipid-DNA Complex JVRS-100", - "BET Inhibitor BAY1238097", - "Redaporfin", - "Anti-FRA/Eribulin Antibody-drug Conjugate MORAb-202", - "c-Met Inhibitor JNJ-38877605", - "7-Hydroxystaurosporine", - "13-Deoxydoxorubicin", - "Iodine I 124 Monoclonal Antibody M5A", - "Doxorubicin-Eluting Beads", - "Hormone Therapy", - "HCV DNA Vaccine INO-8000", - "Cosibelimab", - "Dimethylmyleran", - "mTORC 1/2 Inhibitor LXI-15029", - "Camrelizumab", - "MDM2 Inhibitor BI 907828", - "Plk1 Inhibitor BI 2536", - "PVA Microporous Hydrospheres/Doxorubicin Hydrochloride", - "Onalespib Lactate", - "Pterostilbene", - "Seneca Valley Virus-001", - "Puromycin", - "Aglatimagene Besadenovec", - "Arfolitixorin", - "SarCNU", - "Antibody-drug Conjugate ABBV-085", - "Hsp90 Inhibitor DS-2248", - "Iodine I 131 Tenatumomab", - "Axl/Mer Inhibitor INCB081776", - "Nanoparticle Albumin-bound Thiocolchicine Dimer nab-5404", - "Anti-VEGFR2 Monoclonal Antibody MSB0254", - "LMB-2 Immunotoxin", - "AKT Inhibitor ARQ 092", - "Mivavotinib", - "Cesalin", - "Mechlorethamine", - "Drozitumab", - "Brivanib", - "HPV E6/E7-encoding Arenavirus Vaccine HB-201", - "Icotinib Hydrochloride", - "Lontucirev", - "Anti-CTLA4 Monoclonal Antibody BMS-986218", - "Iodine I 131 Tositumomab", - "Cabozantinib S-malate", - "O6-Benzylguanine", - "Autologous Anti-BCMA-CAR Expressing Stem Memory T-cells P-BCMA-101", - "Vinblastine", - "Telaglenastat", - "FAP/4-1BB-targeting Fusion Protein RO7122290", - "Anti-Globo H Monoclonal Antibody OBI-888", - "Chlorotoxin (EQ)-CD28-CD3zeta-CD19t-expressing CAR T-lymphocytes", - "Riviciclib", - "Anhydrovinblastine", - "Imetelstat", - "RAF Kinase Inhibitor XL281", - "ALK Inhibitor TAE684", - "Anti-PGF Monoclonal Antibody RO5323441", - "Gamma-Secretase Inhibitor RO4929097", - "Realgar-Indigo naturalis Formulation", - "Deoxycytidine Analogue TAS-109 Hydrochloride", - "CD47 Antagonist ALX148", - "Ofranergene Obadenovec", - "Clanfenur", - "Iobenguane I-131", - "Lurtotecan Liposome", - "Anti-MUC16/CD3 BiTE Antibody REGN4018", - "HER2-targeting Antibody Fc Fragment FS102", - "Nitrogen Mustard Prodrug PR-104", - "Extended-release Onapristone", - "Polyamine Analogue SBP-101", - "Saracatinib Difumarate", - "Anti-HER2 Antibody-drug Conjugate RC48", - "Proxalutamide", - "Lucatumumab", - "Bacillus Calmette-Guerin Substrain Connaught Live Antigen", - "Cannabidiol", - "CD20-CD19 Compound CAR T Cells", - "White Carrot", - "Blinatumomab", - "Tubulin Inhibitor ALB-109564", - "Cabozantinib", - "Vosaroxin", - "Immunocytokine NHS-IL2-LT", - "Incyclinide", - "Total Androgen Blockade", - "Sulforaphane", - "NY-ESO-1/GLA-SE Vaccine ID-G305", - "Acivicin", - "Bruceanol A", - "IDH1 Mutant Inhibitor LY3410738", - "5-Fluoro-2-Deoxycytidine", - "XBP1-US/XBP1-SP/CD138/CS1 Multipeptide Vaccine PVX-410", - "Cositecan", - "Anti-B7H3 Antibody-drug Conjugate MGC018", - "Lometrexol", - "Prednisolone", - "Sardomozide", - "Autologous CD19-targeted CAR T Cells JWCAR029", - "Cinobufotalin", - "Citarinostat", - "Atiprimod Dihydrochloride", - "Methyl-5-Aminolevulinate Hydrochloride Cream", - "Trientine Hydrochloride", - "Lutetium Lu 177-DTPA-omburtamab", - "ChiNing Decoction", - "Ganitumab", - "Ispinesib Mesylate", - "Iodine I 131 Ethiodized Oil", - "Dioscorea nipponica Makino Extract DNE3", - "Peptide 946-Tetanus Peptide Conjugate Melanoma Vaccine", - "Indicine-N-Oxide", - "Monoclonal Antibody 1F5", - "Futibatinib", - "Vulinacimab", - "Paclitaxel Trevatide", - "Tivantinib", - "Dupilumab", - "Sodium Selenite", - "Attenuated Live Listeria Encoding HPV 16 E7 Vaccine ADXS11-001", - "Diindolylmethane", - "Anti-CD46 Antibody-drug Conjugate FOR46", - "Iodine I 131 Monoclonal Antibody G-250", - "Dihydroorotate Dehydrogenase Inhibitor BAY2402234", - "Acodazole Hydrochloride", - "Anti-NY-ESO1/LAGE-1A TCR/scFv Anti-CD3 IMCnyeso", - "Anti-VEGFC Monoclonal Antibody VGX-100", - "JAK2 Inhibitor AZD1480", - "Lapuleucel-T", - "Perifosine", - "Anti-EGFR Monoclonal Antibody GT-MAB 5.2-GEX", - "Staphylococcal Enterotoxin A", - "Yttrium Y-90 Clivatuzumab Tetraxetan", - "P-TEFb Inhibitor BAY1143572", - "Porcupine Inhibitor WNT974", - "Spiromustine", - "Molibresib Besylate", - "Tolebrutinib", - "Anti-MUC16/MMAE Antibody-Drug Conjugate DMUC4064A", - "Recombinant Interferon Alfa", - "Aryl Hydrocarbon Receptor Antagonist BAY2416964", - "DHA-Paclitaxel", - "Darolutamide", - "ATR Kinase Inhibitor M1774", - "mRNA-derived KRAS-targeted Vaccine V941", - "Anti-GRP78 Monoclonal Antibody PAT-SM6", - "Ilginatinib", - "Apricoxib", - "Daclizumab", - "Anti-GD2 Monoclonal Antibody hu14.18K322A", - "Bintrafusp Alfa", - "Imidazole Mustard", - "Nucleoside Analog DFP-10917", - "Smac Mimetic GDC-0917", - "BET Inhibitor RO6870810", - "Motixafortide", - "Heparan Sulfate Glycosaminoglycan Mimetic M402", - "Foslinanib", - "Cancell", - "Naratuximab Emtansine", - "Cemiplimab", - "Anti-DLL4/VEGF Bispecific Monoclonal Antibody OMP-305B83", - "Clomiphene Citrate", - "Axatilimab", - "FACT Complex-targeting Curaxin CBL0137", - "Emepepimut-S", - "Monoclonal Antibody Lym-1", - "9-Ethyl 6-Mercaptopurine", - "HDAC Class I/IIb Inhibitor HG146", - "Azathioprine", - "Motexafin Gadolinium", - "PI3K Inhibitor GDC-0084", - "Ribociclib/Letrozole", - "Oligonucleotide SPC2996", - "Abexinostat", - "Factor VIIa Inhibitor PCI-27483", - "Smac Mimetic GDC-0152", - "Halofuginone Hydrobromide", - "DR5-targeting Tetrameric Nanobody Agonist TAS266", - "PEOX-based Polymer Encapsulated Paclitaxel FID-007", - "L-Gossypol", - "Allogeneic Anti-BCMA-CAR T-cells PBCAR269A", - "Anti-PD-L1 Monoclonal Antibody BCD-135", - "EGFR/HER1/HER2 Inhibitor PKI166", - "Alofanib", - "Oncolytic HSV-1 rQNestin34.5v.2", - "Aminocamptothecin", - "Oral Topotecan Hydrochloride", - "Telatinib Mesylate", - "Beta-elemene", - "Prednisone", - "Pseudoisocytidine", - "Vinorelbine Tartrate", - "Liposome-encapsulated TAAs mRNA Vaccine W_ova1", - "Glioblastoma Cancer Vaccine ERC1671", - "EGFR Antagonist Hemay022", - "Retinyl Acetate", - "Mocetinostat", - "Murizatoclax", - "S-equol", - "Smoothened Antagonist TAK-441", - "Vinblastine Sulfate", - "Chiauranib", - "Anti-OX40 Antibody BMS 986178", - "C/EBP Beta Antagonist ST101", - "Duborimycin", - "Leuprolide Mesylate Injectable Suspension", - "TRPV6 Calcium Channel Inhibitor SOR-C13", - "Monoclonal Antibody HuHMFG1", - "TIGIT-targeting Agent MK-7684", - "GBM Antigens and Alloantigens Immunotherapeutic Vaccine", - "Baricitinib", - "Motolimod", - "Ibandronate Sodium", - "CYP17 Inhibitor CFG920", - "Phospholipid Ether-drug Conjugate CLR 131", - "Talimogene Laherparepvec", - "Belotecan Hydrochloride", - "Solitomab", - "Alefacept", - "Tretinoin Liposome", - "Vascular Disrupting Agent BNC105P", - "Idarubicin", - "Anti-HER2 Immune Stimulator-antibody Conjugate NJH395", - "Anti-DR5 Agonist Monoclonal Antibody TRA-8", - "STING-activating Cyclic Dinucleotide Agonist MIW815", - "ER alpha Proteolysis-targeting Chimera Protein Degrader ARV-471", - "Doxorubicin Prodrug L-377;202", - "Checkpoint Kinase Inhibitor XL844", - "Oncolytic Virus RP1", - "Verubulin", - "BiTE Antibody AMG 910", - "Vinflunine Ditartrate", - "Razoxane", - "Ulocuplumab", - "Anti-Folate Receptor-alpha Antibody Drug Conjugate STRO-002", - "PI3K Alpha/mTOR Inhibitor PWT33597 Mesylate", - "Anti-CD48/MMAE Antibody-drug Conjugate SGN-CD48A", - "MK0731", - "Anti-CD33 Monoclonal Antibody BI 836858", - "P-cadherin Inhibitor PCA062", - "Recombinant Transforming Growth Factor-Beta-2", - "STAT3 Inhibitor WP1066", - "Anti-AXL Fusion Protein AVB-S6-500", - "Retaspimycin Hydrochloride", - "Epratuzumab-cys-tesirine", - "Asciminib", - "MAGE-A3 Multipeptide Vaccine GL-0817", - "Tesidolumab", - "Phellodendron amurense Bark Extract", - "mRNA-based TriMix Melanoma Vaccine ECI-006", - "P-cadherin-targeting Agent PF-06671008", - "2-O; 3-O Desulfated Heparin", - "Anti-PVRIG Monoclonal Antibody COM701", - "Plicamycin", - "Kanitinib", - "Glasdegib Maleate", - "Alitretinoin", - "Vesencumab", - "Batabulin Sodium", - "Anti-BCMA Antibody SEA-BCMA", - "Piroxantrone", - "BRAF Inhibitor BGB-3245", - "Lactoferrin-derived Lytic Peptide LTX-315", - "Anti-S15 Monoclonal Antibody NC318", - "Liposome-Encapsulated Doxorubicin Citrate", - "Tavokinogene Telseplasmid", - "Anti-RANKL Monoclonal Antibody GB-223", - "Ensituximab", - "Vascular Disrupting Agent ZD6126", - "Anti-TIM3 Monoclonal Antibody LY3321367", - "Ontorpacept", - "Pamrevlumab", - "Carmustine", - "I 131 Antiferritin Immunoglobulin", - "Autologous AXL-targeted CAR T-cells CCT301-38", - "Opolimogene Capmilisbac", - "Anthramycin", - "CD40 Agonist Monoclonal Antibody CP-870;893", - "MALT1 Inhibitor JNJ-67856633", - "CK1alpha/CDK7/CDK9 Inhibitor BTX-A51", - "Pegfilgrastim", - "Risperidone Formulation in Rumenic Acid", - "Smac Mimetic LCL161", - "Efatutazone Dihydrochloride", - "Anhydrous Enol-oxaloacetate", - "HPV16 L2/E6/E7 Fusion Protein Vaccine TA-CIN", - "RET/SRC Inhibitor TPX-0046", - "Anti-CD137 Agonistic Monoclonal Antibody LVGN6051", - "Anti-CD123 Monoclonal Antibody CSL360", - "Anti-CD123/CD3 Bispecific Antibody JNJ-63709178", - "Factor VII-targeting Immunoconjugate Protein ICON-1", - "Imiquimod", - "Pentamethylmelamine", - "Carbogen", - "Anti-PD-1/Anti-PD-L1 Bispecific Antibody LY3434172", - "CDK7 Inhibitor SY-5609", - "Cladribine", - "B-Raf/VEGFR-2 Inhibitor RAF265", - "Infigratinib Mesylate", - "Auranofin", - "Monoclonal Antibody 105AD7 Anti-idiotype Vaccine", - "Nanosomal Docetaxel Lipid Suspension", - "Adenoviral Transduced hIL-12-expressing Autologous Dendritic Cells INXN-3001 Plus Activator Ligand INXN-1001", - "PAK4/NAMPT Inhibitor KPT-9274", - "SIRPa-4-1BBL Fusion Protein DSP107", - "Anti-FLT3 Monoclonal Antibody IMC-EB10", - "Sodium Metaarsenite", - "Iridium Ir 192", - "Daunorubicin Hydrochloride", - "Picibanil", - "Sabatolimab", - "Anti-CEA/Anti-DTPA-In (F6-734) Bispecific Antibody", - "HER2-directed TLR8 Agonist SBT6050", - "Mivobulin Isethionate", - "Nucleotide Analog Prodrug NUC-3373", - "iPSC-derived CD16/IL-15RF-expressing Anti-CD19 CAR-NK Cells FT596", - "Numidargistat", - "Digoxin", - "Anti-GITR Monoclonal Antibody MK-4166", - "Cobomarsen", - "Antibody-drug Conjugate ABBV-176", - "Arcitumomab", - "Seocalcitol", - "Autologous Anti-CD19 Chimeric Antigen Receptor T-cells SJCAR19", - "Losoxantrone Hydrochloride", - "Ets-family Transcription Factor Inhibitor TK216", - "Mesna", - "Mirdametinib", - "Gusperimus Trihydrochloride", - "Anti-c-Met Monoclonal Antibody HLX55", - "Exatecan Mesylate Anhydrous", - "Evofosfamide", - "Ulinastatin", - "Indoximod", - "PKC-alpha Antisense Oligodeoxynucleotide ISIS 3521", - "Varlilumab", - "SN-38-Loaded Polymeric Micelles NK012", - "Urokinase-Derived Peptide A6", - "Inosine Monophosphate Dehydrogenase Inhibitor AVN944", - "c-Met Inhibitor AMG 208", - "DTRMWXHS-12/Everolimus/Pomalidomide Combination Agent DTRM-555", - "HLA-A*0201 Restricted TERT(572Y)/TERT(572) Peptides Vaccine Vx-001", - "Milademetan Tosylate", - "Mitoguazone", - "Topoisomerase-II Inhibitor Racemic XK469", - "Xanthohumol", - "Nogapendekin Alfa", - "Etoricoxib", - "Opioid Growth Factor", - "Monoclonal Antibody Me1-14 F(ab')2", - "Pegvisomant", - "TM4SF1-CAR/EpCAM-CAR-expressing Autologous T Cells", - "Enasidenib Mesylate", - "BET Inhibitor CPI-0610", - "Nanafrocin", - "Anti-CD26 Monoclonal Antibody YS110", - "Anti-CD19 Monoclonal Antibody MEDI-551", - "Staurosporine", - "CDK4/6 Inhibitor G1T38", - "Oncolytic Adenovirus ORCA-010", - "Bromocriptine Mesylate", - "Anti-PD-L1 Monoclonal Antibody LY3300054", - "Recombinant MIP1-alpha Variant ECI301", - "Antibody-drug Conjugate PF-06664178", - "Atamestane", - "Oligo-fucoidan", - "Radioactive Iodine", - "Src/tubulin Inhibitor KX02", - "Gossypol", - "Telomerase Inhibitor FJ5002", - "Ragifilimab", - "Arsenic Trioxide", - "Melanoma TRP2 CTL Epitope Vaccine SCIB1", - "PI3K Inhibitor BGT226", - "Carboquone", - "Anti-CD47 Monoclonal Antibody SRF231", - "ERK1/2 Inhibitor ASN007", - "Monomethyl Auristatin E", - "Milatuzumab-Doxorubicin Antibody-Drug Conjugate IMMU-110", - "MVA-FCU1 TG4023", - "Ovarian Cancer Stem Cell/hTERT/Survivin mRNAs-loaded Autologous Dendritic Cell Vaccine DC-006", - "Autologous CD123-4SCAR-expressing T-cells 4SCAR123", - "Polysialic Acid", - "Anti-CD3/Anti-GUCY2C Bispecific Antibody PF-07062119", - "Anti-FGFR3 Antibody-drug Conjugate LY3076226", - "Prinomastat", - "Apomine", - "Live-Attenuated Listeria Encoding Human Mesothelin Vaccine CRS-207", - "Recombinant Platelet Factor 4", - "Anti-CD30 Monoclonal Antibody XmAb2513", - "Imaradenant", - "Onatasertib", - "Attenuated Measles Virus Encoding SCD Transgene TMV-018", - "c-Met Inhibitor AL2846", - "FGFR Inhibitor Debio 1347", - "Mitolactol", - "Anti-HLA-G Antibody TTX-080", - "Allogeneic Anti-BCMA CAR-transduced T-cells ALLO-715", - "Anti-CD123-Pyrrolobenzodiazepine Dimer Antibody Drug Conjugate SGN-CD123A", - "Isotretinoin", - "Src Kinase Inhibitor M475271", - "Monoclonal Antibody HuAFP31", - "Anti-PD-1/VEGF Bispecific Antibody AK112", - "Aceglatone", - "Blueberry Powder Supplement", - "CEA-MUC-1-TRICOM Vaccine CV301", - "Deferoxamine", - "Iodine I 131 MIP-1095", - "Litronesib", - "Octreotide Acetate", - "Autologous CD38-4SCAR-expressing T-cells 4SCAR38", - "Glasdegib", - "Idronoxil", - "Annonaceous Acetogenins", - "JAK2 Inhibitor XL019", - "Bromacrylide", - "PPAR Alpha Antagonist TPST-1120", - "ssRNA-based Immunomodulator CV8102", - "Phosphorus P-32", - "Anti-CD19 Antibody-drug Conjugate SGN-CD19B", - "Pegylated Interferon Alfa", - "FGFR Inhibitor ASP5878", - "Hodgkin's Antigens-GM-CSF-Expressing Cell Vaccine", - "Melphalan Hydrochloride/Sulfobutyl Ether Beta-Cyclodextrin Complex", - "Pyrotinib Dimaleate", - "Iodine I-131", - "Paclitaxel Polymeric Micelle Formulation NANT-008", - "Anti c-KIT Antibody-drug Conjugate LOP628", - "Paclitaxel-Loaded Polymeric Micelle", - "Anti-PRAME T-cell Receptor/Anti-CD3 scFv Fusion Protein IMC-F106C", - "Dulanermin", - "Recombinant Fractalkine", - "Anti-AG7 Antibody Drug Conjugate AbGn-107", - "Emofolin Sodium", - "Lyophilized Black Raspberry Saliva Substitute", - "Anti-CD39 Monoclonal Antibody SRF617", - "Topoisomerase I Inhibitor Genz-644282", - "Autologous CD22-4SCAR-expressing T-cells 4SCAR22", - "Pegylated Liposomal Irinotecan", - "BTK Inhibitor M7583", - "Sepantronium Bromide", - "Pan-Mutant-IDH1 Inhibitor Bay-1436032", - "Anti-HIV-1 Lentiviral Vector-expressing sh5/C46 Cal-1", - "Lyophilized Black Raspberry Lozenge", - "Narnatumab", - "Pyrotinib", - "Shared Anti-Idiotype-AB-S024A", - "Tipiracil", - "Diazepinomicin", - "Anti-TIGIT Monoclonal Antibody AB154", - "Raltitrexed", - "Androgen Receptor Antagonist TAS3681", - "CD11b Agonist GB1275", - "Y 90 Monoclonal Antibody CC49", - "Levothyroxine Sodium", - "Everolimus", - "Estrogen Receptor Agonist GTx-758", - "Pexidartinib", - "Anti-EGFR Monoclonal Antibody SYN004", - "Fenretinide Phospholipid Suspension ST-001", - "Monoclonal Antibody D6.12", - "Pentamustine", - "Licorice", - "Alectinib", - "Cemadotin", - "Chk1 Inhibitor GDC-0425", - "Anti-PD-L1 Monoclonal Antibody CK-301", - "Oleclumab", - "Pibrozelesin", - "Recombinant Interleukin-18", - "alpha-Folate Receptor-targeting Thymidylate Synthase Inhibitor ONX-0801", - "Hafnium Oxide-containing Nanoparticles NBTXR3", - "Anti-BCMA Antibody-drug Conjugate GSK2857916", - "CpG Oligodeoxynucleotide GNKG168", - "Selicrelumab", - "BMS-214662", - "Rituximab and Hyaluronidase Human", - "Acitretin", - "Clomiphene", - "Varlitinib", - "Onvansertib", - "CAIX Inhibitor SLC-0111", - "Lisocabtagene Maraleucel", - "Natalizumab", - "Gemcitabine Hydrochloride Emulsion", - "Autologous Tetravalent Dendritic Cell Vaccine MIDRIX4-LUNG", - "Tyrosine Kinase Inhibitor SU5402", - "D-methionine Formulation MRX-1024", - "Vanucizumab", - "Liothyronine I-131", - "Becatecarin", - "Allovectin-7", - "Idelalisib", - "Thiotepa", - "Mavelertinib", - "Aurora Kinase Inhibitor BI 811283", - "Ras Inhibitor", - "Anti-DR5 Agonistic Monoclonal Antibody INBRX-109", - "mTOR Kinase Inhibitor OSI-027", - "Multikinase Inhibitor SAR103168", - "EZH1/2 Inhibitor HH2853", - "Allogeneic GM-CSF-secreting Lethally Irradiated Whole Melanoma Cell Vaccine", - "PI3K/mTOR Kinase Inhibitor WXFL10030390", - "Anti-PD-1 Monoclonal Antibody AMG 404", - "Allogeneic GM-CSF-secreting Breast Cancer Vaccine SV-BR-1-GM", - "Iodine I 131 Rituximab", - "Galectin-1 Inhibitor OTX008", - "MUC-1/WT1 Peptide-primed Autologous Dendritic Cells", - "Mureletecan", - "PSMA-targeted Docetaxel Nanoparticles BIND-014", - "Engineered Red Blood Cells Co-expressing 4-1BBL and IL-15TP RTX-240", - "Topoisomerase I Inhibitor LMP400", - "Anti-Met/EGFR Monoclonal Antibody LY3164530", - "Mitomycin C Analog KW-2149", - "BMI1 Inhibitor PTC596", - "Lenalidomide", - "Ras Peptide VAL", - "Anti-CTLA-4 Monoclonal Antibody AGEN1181", - "Selective Estrogen Receptor Modulator TAS-108", - "Otlertuzumab", - "Eftilagimod Alpha", - "Anti-CSF1R Monoclonal Antibody IMC-CS4", - "Noscapine Hydrochloride", - "Sotorasib", - "Autologous TCRm-expressing T-cells ET140203", - "Olivomycin", - "Anti-PD-1/TIM-3 Bispecific Antibody RO7121661", - "BTK Inhibitor HZ-A-018", - "Siplizumab", - "Atorvastatin Sodium", - "Fimepinostat", - "Tamoxifen Citrate", - "Lexatumumab", - "Bicalutamide", - "Beta-Carotene", - "Levoleucovorin Calcium", - "Nanocell-encapsulated miR-16-based microRNA Mimic", - "Green Tea Extract-based Antioxidant Supplement", - "Gemcitabine Elaidate", - "Serine/Threonine Kinase Inhibitor CBP501", - "Anti-CD19/CD22 CAR NK Cells", - "Triptorelin Pamoate", - "Anti-TIM-3 Monoclonal Antibody MBG453", - "Interleukin-15 Agonist Fusion Protein SHR1501", - "Alobresib", - "Vofatamab", - "Liposomal MUC1/PET-lipid A Vaccine ONT-10", - "Aclarubicin", - "CDK4/6 Inhibitor BPI-16350", - "Sonolisib", - "Anti-PD-L1/4-1BB Bispecific Antibody INBRX-105", - "Pepinemab", - "Tiomolibdate Choline", - "ALK Inhibitor RO5424802", - "NAMPT Inhibitor OT-82", - "Onalespib", - "Monoclonal T-cell Receptor Anti-CD3 scFv Fusion Protein IMCgp100", - "Anti-PD-L1 Monoclonal Antibody HLX20", - "TRK Inhibitor AZD6918", - "Spartalizumab", - "Clivatuzumab", - "Chk1 Inhibitor GDC-0575", - "MTF-1 Inhibitor APTO-253 HCl", - "Anti-CD38 Monoclonal Antibody SAR442085", - "Olinvacimab", - "EGFR T790M Antagonist BPI-15086", - "Rebeccamycin", - "Anakinra", - "TrkA Inhibitor VMD-928", - "Anti-TIGIT Monoclonal Antibody SGN-TGT", - "Bosutinib", - "IGF-1R/IR Inhibitor KW-2450", - "Yttrium Y 90 Anti-CD45 Monoclonal Antibody BC8", - "Teniposide", - "Necitumumab", - "Hydroxytyrosol", - "Ancitabine Hydrochloride", - "Calcium Saccharate", - "Inecalcitol", - "Autologous FRa-4SCAR-expressing T-cells 4SCAR-FRa", - "FGFR2 Inhibitor RLY-4008", - "11C Topotecan", - "Audencel", - "Monoclonal Antibody CC49-delta CH2", - "Anti-TIM-3 Antibody BMS-986258", - "Enclomiphene", - "Filgrastim", - "RFT5-dgA Immunotoxin IMTOX25", - "Dilpacimab", - "CD4-specific Telomerase Peptide Vaccine UCPVax", - "EGFR/HER2 Inhibitor AV-412", - "DM4-Conjugated Anti-Cripto Monoclonal Antibody BIIB015", - "Tetradecanoylphorbol Acetate", - "Olutasidenib", - "Annamycin Liposomal", - "Holmium Ho 166 Poly(L-Lactic Acid) Microspheres", - "Anti-DKK1 Monoclonal Antibody BHQ880", - "Taladegib", - "Lavendustin A", - "Antibody-like CD95 Receptor/Fc-fusion Protein CAN-008", - "ERK 1/2 Inhibitor ASTX029", - "Gastrin/cholecystokinin Type B Receptor Inhibitor Z-360", - "Light-Emitting Oncolytic Vaccinia Virus GL-ONC1", - "Linperlisib", - "Nanoparticle Albumin-Bound Rapamycin", - "Obinutuzumab", - "Demecolcine", - "Mycobacterium w", - "Personalized and Adjusted Neoantigen Peptide Vaccine PANDA-VAC", - "pNGVL4a-CRT-E6E7L2 DNA Vaccine", - "Theliatinib", - "Anti-AGS-8 Monoclonal Antibody AGS-8M4", - "Anti-BCMA Antibody-drug Conjugate AMG 224", - "Cobimetinib", - "Pracinostat", - "Shu Yu Wan Formula", - "EGFR Inhibitor PD-168393", - "Envafolimab", - "Selective Glucocorticoid Receptor Antagonist CORT125281", - "Thalicarpine", - "Topical Trichloroacetic Acid", - "Dexanabinol", - "Folate-FITC", - "Denibulin", - "Oxcarbazepine", - "Platinum Acetylacetonate-Titanium Dioxide Nanoparticles", - "Anti-PD-1 Monoclonal Antibody HX008", - "Immunomodulator LAM-003", - "Degarelix", - "Autologous TCR-engineered T-cells IMA201", - "Milatuzumab", - "Strontium Chloride Sr-89", - "Dinaciclib", - "Samarium Sm 153-DOTMP", - "Anti-HBEGF Monoclonal Antibody U3-1565", - "Yttrium Y 90 Resin Microspheres", - "Platinum", - "Antibody-drug Conjugate ABBV-155", - "Anti-TIGIT Monoclonal Antibody COM902", - "Abiraterone Acetate", - "Agonistic Anti-CD40 Monoclonal Antibody ADC-1013", - "Caracemide", - "Combretastatin A1 Diphosphate", - "Linoleyl Carbonate-Paclitaxel", - "Xiaoai Jiedu Decoction", - "ATR Kinase Inhibitor VX-803", - "Mapatumumab", - "Uproleselan", - "Asparaginase Erwinia chrysanthemi", - "Beta Alethine", - "Monoclonal Antibody R24", - "Reparixin", - "CCR2 Antagonist CCX872-B", - "HER2 Tri-specific Natural Killer Cell Engager DF1001", - "PI3K Inhibitor GSK1059615", - "Anti-CD39 Monoclonal Antibody TTX-030", - "Prednisolone Sodium Phosphate", - "Interferon Alfacon-1", - "Rigosertib", - "Sargramostim", - "Vintafolide", - "Ketoconazole", - "Anti-HA Epitope Monoclonal Antibody MEDI8852", - "Recombinant Interferon Alpha 2b-like Protein", - "Autologous Anti-CD19 T-cell Receptor T cells ET190L1", - "Zorubicin Hydrochloride", - "IRAK4 Inhibitor CA-4948", - "ATR Inhibitor RP-3500", - "Triplatin Tetranitrate", - "Pralsetinib", - "Stallimycin", - "Anti-CD19 Antibody-T-cell Receptor-expressing T-cells ET019003", - "Anti-PD-1/Anti-LAG-3 DART Protein MGD013", - "Bersanlimab", - "SDF-1 Receptor Antagonist PTX-9908", - "Fibromun", - "Anti-CD47 Monoclonal Antibody Hu5F9-G4", - "Anti-PD-L1 Monoclonal Antibody GR1405", - "PSMA/CD3 Tri-specific T-cell Activating Construct HPN424", - "2-Hydroxyestrone", - "Recombinant Interferon", - "STING Agonist BMS-986301", - "Talotrexin", - "APC8015F", - "Belantamab Mafodotin", - "Fenebrutinib", - "Anti-CTGF Monoclonal Antibody FG-3019", - "Etirinotecan Pegol", - "Anti-HER2 Antibody Conjugated Natural Killer Cells ACE1702", - "Anastrozole", - "c-Met Inhibitor ABN401", - "Itraconazole", - "PD-L1/PD-L2/VISTA Antagonist CA-170", - "Autologous Heat-Shock Protein 70 Peptide Vaccine AG-858", - "Androstane Steroid HE3235", - "Batabulin", - "SERD GDC-9545", - "DNA-PK inhibitor AZD7648", - "Tropomyosin Receptor Kinase Inhibitor AZD7451", - "Anti-Ly6E Antibody-Drug Conjugate RG 7841", - "c-Met Inhibitor AMG 337", - "Anti-EGFR Monoclonal Antibody RO5083945", - "hTERT Multipeptide/Montanide ISA-51 VG/Imiquimod Vaccine GX 301", - "Zirconium Zr 89 Panitumumab", - "Anti-HLA-DR Monoclonal Antibody IMMU-114", - "Mycobacterium tuberculosis Arabinomannan Z-100", - "Mirvetuximab Soravtansine", - "Hexaminolevulinate", - "Poliglusam", - "Black Raspberry Nectar", - "Trilaciclib", - "Docetaxel", - "Anti-CD33/CD3 BiTE Antibody AMG 330", - "Antiangiogenic Drug Combination TL-118", - "DM-CHOC-PEN", - "Anti-AGS-16 Monoclonal Antibody AGS-16M18", - "Ciltacabtagene Autoleucel", - "Topoisomerase-II-beta Inhibitor Racemic XK469", - "Anti-IRF4 Antisense Oligonucleotide ION251", - "Anti-CDH6 Antibody-drug Conjugate HKT288", - "Adenovirus-expressing TLR5/TLR5 Agonist Nanoformulation M-VM3", - "Aurora Kinase Inhibitor AMG 900", - "Dexrazoxane", - "CDC7 Kinase Inhibitor BMS-863233", - "Tanespimycin", - "Fosaprepitant", - "Recombinant Vesicular Stomatitis Virus-expressing Human Interferon Beta and Sodium-Iodide Symporter", - "Anti-c-Met Monoclonal Antibody ARGX-111", - "Recombinant Super-compound Interferon", - "Apoptosis Inducer MPC-2130", - "Elmustine", - "Sapitinib", - "Tucotuzumab Celmoleukin", - "Recombinant Oncolytic Poliovirus PVS-RIPO", - "Suramin", - "Fluorine F 18 Ara-G", - "Lenzilumab", - "SRPK1/ABCG2 Inhibitor SCO-101", - "Lysine-specific Demethylase 1 Inhibitor INCB059872", - "Tomato-Soy Juice", - "Methylmercaptopurine Riboside", - "Sivifene", - "Anti-TROP2/DXd Antibody-drug Conjugate DS-1062a", - "Anti-DKK-1 Monoclonal Antibody LY2812176", - "Doxorubicin", - "Denosumab", - "FGFR Inhibitor CPL304110", - "BRAF(V600E) Kinase Inhibitor RO5212054", - "Nadofaragene Firadenovec", - "Recombinant Saccharomyces Cerevisia-CEA(610D)-Expressing Vaccine GI-6207", - "Calcium Release-activated Channels Inhibitor RP4010", - "ERK1/2 Inhibitor LY3214996", - "Melanoma Monoclonal Antibody hIgG2A", - "CSF-1R Inhibitor BLZ945", - "Avapritinib", - "Cortisone Acetate", - "Alvocidib Hydrochloride", - "Anti-CD47 ADC SGN-CD47M", - "Allogeneic CD8+ Leukemia-associated Antigens Specific T Cells NEXI-001", - "ARC Fusion Protein SL-279252", - "Genistein", - "Radium Ra 224-labeled Calcium Carbonate Microparticles", - "Bcr-Abl Kinase Inhibitor K0706", - "Monoclonal Antibody HeFi-1", - "Monoclonal Antibody m170", - "FGFR/CSF-1R Inhibitor 3D185", - "Anti-RANKL Monoclonal Antibody JMT103", - "Carmustine in Ethanol", - "Trioxifene", - "Omacetaxine Mepesuccinate", - "Autologous Pancreatic Adenocarcinoma Lysate and mRNA-loaded Dendritic Cell Vaccine", - "ncmtRNA Oligonucleotide Andes-1537", - "Bisantrene", - "Tocotrienol-rich Fraction", - "Anti-VEGF Monoclonal Antibody hPV19", - "Nitroglycerin Transdermal Patch", - "Arugula Seed Powder", - "Regorafenib", - "Protein Arginine Methyltransferase 5 Inhibitor GSK3326595", - "Inulin", - "Pertuzumab", - "Anti-Melanin Monoclonal Antibody PTI-6D2", - "Floxuridine", - "MMP Inhibitor S-3304", - "Danusertib", - "Cixutumumab", - "Anti-CD20/Anti-CD3 Bispecific IgM Antibody IGM2323", - "Globo H-DT Vaccine OBI-833", - "Commensal Bacterial Strain Formulation VE800", - "Live-attenuated Double-deleted Listeria monocytogenes Bacteria JNJ-64041809", - "Anti-mesothelin Antibody-drug Conjugate BMS-986148", - "Beta-Glucan MM-10-001", - "Anti-CD20 Monoclonal Antibody PRO131921", - "Azaserine", - "KRAS G12C Inhibitor LY3499446", - "Polyunsaturated Fatty Acid", - "Survivin mRNA Antagonist EZN-3042", - "Teprotumumab", - "STAT3 Inhibitor TTI-101", - "Idiotype-Pulsed Autologous Dendritic Cell Vaccine APC8020", - "HDAC Inhibitor OBP-801", - "Monoclonal Antibody E2.3", - "Perflenapent Emulsion", - "Talaporfin Sodium", - "Allogeneic GM-CSF-secreting Tumor Vaccine PANC 6.03 pcDNA-1/GM-Neo", - "Lilotomab", - "HDM2 Inhibitor MK-8242", - "DI-Leu16-IL2 Immunocytokine", - "Autologous Anti-FLT3 CAR T Cells AMG 553", - "Bermekimab", - "Cytidine Analog RX-3117", - "PKA Regulatory Subunit RIalpha Mixed-Backbone Antisense Oligonucleotide GEM 231", - "Anti-CLDN6 Monoclonal Antibody ASP1650", - "Autologous TCR-engineered T-cells IMA203", - "Antineoplaston A10", - "Mitozolomide", - "Pegylated Liposomal Nanoparticle-based Docetaxel Prodrug MNK-010", - "Glufosfamide", - "PRMT1 Inhibitor GSK3368715", - "Anti-CD47 Monoclonal Antibody SHR-1603", - "Tilsotolimod Sodium", - "Anti-CD123/CD3 BiTE Antibody SAR440234", - "Sibrotuzumab", - "Thioureidobutyronitrile", - "Enobosarm", - "Iberdomide", - "Nidanilimab", - "Anti-ROR1/PNU-159682 Derivative Antibody-drug Conjugate NBE-002", - "Survivin-expressing CVD908ssb-TXSVN Vaccine", - "Yttrium Y 90-labeled Anti-FZD10 Monoclonal Antibody OTSA101", - "Hematoporphyrin Derivative", - "CDK1/2/4 Inhibitor AG-024322", - "Canertinib Dihydrochloride", - "Levothyroxine", - "Talabostat Mesylate", - "Yttrium Y 90 Anti-CD45 Monoclonal Antibody AHN-12", - "Anti-Glypican 3/CD3 Bispecific Antibody ERY974", - "TGF-beta Receptor 1 Inhibitor PF-06952229", - "Brimonidine Tartrate Nanoemulsion OCU-300", - "C-VISABikDD", - "Interleukin-15/Interleukin-15 Receptor Alpha Sushi+ Domain Fusion Protein SO-C101", - "Iodine I 131 Derlotuximab Biotin", - "Neoantigen-based Glioblastoma Vaccine", - "Recombinant Anti-WT1 Immunotherapeutic GSK2302024A", - "Beauvericin", - "Margetuximab", - "Polypodium leucotomos Extract", - "Docetaxel Emulsion ANX-514", - "Fas Ligand-treated Allogeneic Mobilized Peripheral Blood Cells", - "Bruceantin", - "Methoxyamine", - "Bleomycin B2", - "Daratumumab and Hyaluronidase-fihj", - "Cenisertib", - "Salmonella VNP20009", - "Anti-CD40/Anti-TAA Bispecific Monoclonal Antibody ABBV-428", - "TRK Inhibitor TQB3558", - "Synthetic Glioblastoma Tumor-associated Peptides Vaccine Therapy APVAC1", - "Iodine I 131 Monoclonal Antibody BC8", - "Indocyanine Green-labeled Polymeric Micelles ONM-100", - "Monoclonal Antibody A27.15", - "PI3Kbeta Inhibitor AZD8186", - "Autologous Tumor Infiltrating Lymphocytes MDA-TIL", - "TLC ELL-12", - "AXL Receptor Tyrosine Kinase/cMET Inhibitor BPI-9016M", - "2-Hydroxyoleic Acid", - "CHP-NY-ESO-1 Peptide Vaccine IMF-001", - "Carboxyamidotriazole Orotate", - "Anti-EGFRvIII/CD3 BiTE Antibody AMG 596", - "Hsp90 Inhibitor PU-H71", - "G Protein-coupled Estrogen Receptor Agonist LNS8801", - "Liposomal Cytarabine", - "Autologous Anti-BCMA CAR T-cells PHE885", - "LV.IL-2/B7.1-Transduced AML Blast Vaccine RFUSIN2-AML1", - "pbi-shRNA STMN1 Lipoplex", - "Carmofur", - "Pibenzimol", - "VEGFR2 Tyrosine Kinase Inhibitor PF-00337210", - "Human MOAB LICO 28a32", - "Tetanus Toxoid Vaccine", - "Anti-CD33 Monoclonal Antibody-DM4 Conjugate AVE9633", - "BXQ-350 Nanovesicle Formulation", - "Masitinib Mesylate", - "Tecogalan Sodium", - "Trimethylcolchicinic Acid", - "Anti-EGFR Monoclonal Antibody HLX-07", - "Falimarev", - "Irinotecan/P-glycoprotein Inhibitor HM30181AK Combination Tablet", - "Hyaluronidase-zzxf/Pertuzumab/Trastuzumab", - "Oral Azacitidine", - "Fimaporfin A", - "PEG-interleukin-2", - "MET Tyrosine Kinase Inhibitor EMD 1204831", - "Sorghum bicolor Supplement", - "Temarotene", - "Cinobufagin", - "Lutetium Lu 177 DOTA-Tetulomab", - "Pelareorep", - "RORgamma Agonist LYC-55716", - "Elacestrant", - "Recombinant Adenovirus-p53 SCH-58500", - "Marcellomycin", - "Sonidegib", - "Cusatuzumab", - "Anti-HER2 Monoclonal Antibody HLX22", - "FLT3/CDK4/6 Inhibitor FLX925", - "MAGE-A3-specific Immunotherapeutic GSK 2132231A", - "Actinomycin C2", - "Spirogermanium", - "Cirmtuzumab", - "Flanvotumab", - "Porcupine Inhibitor CGX1321", - "Veliparib", - "Enoblituzumab", - "Phenyl Acetate", - "Adenosine A2A Receptor Antagonist/Phosphodiesterase 10A PBF-999", - "Retrovector Encoding Mutant Anti-Cyclin G1", - "Autologous TCR-engineered T-cells IMA202", - "Carboplatin", - "Anti-PD-1 Monoclonal Antibody BAT1306", - "Dexamethasone Phosphate", - "Nimustine Hydrochloride", - "Tertomotide", - "Tagraxofusp-erzs", - "Savolitinib", - "Grapiprant", - "Zotatifin", - "Chaparrin", - "Anti-SIRPa Monoclonal Antibody CC-95251", - "Tefinostat", - "Isatuximab", - "Anti-CD40 Agonist Monoclonal Antibody ABBV-927", - "Eftozanermin Alfa", - "Anti-CD27L Antibody-Drug Conjugate AMG 172", - "Mucoadhesive Paclitaxel Formulation", - "Calculus bovis/Moschus/Olibanum/Myrrha Capsule", - "Sitimagene Ceradenovec", - "Rosuvastatin", - "HPV16E7-specificHLA-A*02", - "Goserelin Acetate Extended-release Microspheres LY01005", - "Catumaxomab", - "Pimasertib", - "Carubicin", - "Anti-PR1/HLA-A2 Monoclonal Antibody Hu8F4", - "CXCR1/2 Inhibitor SX-682", - "Cibisatamab", - "Docetaxel Anhydrous", - "Peldesine", - "Sunitinib", - "Fluvastatin Sodium", - "Sotrastaurin", - "Burosumab", - "Anti-GCC Antibody-Drug Conjugate MLN0264", - "Sodium-Potassium Adenosine Triphosphatase Inhibitor RX108", - "Hydroxychloroquine", - "Merbarone", - "Autologous AFP Specific T Cell Receptor Transduced T Cells C-TCR055", - "Anti-CD117 Monoclonal Antibody JSP191", - "KRN5500", - "Recombinant Interferon Beta", - "Giloralimab", - "Rucaparib Phosphate", - "Anti-latent TGF-beta 1 Monoclonal Antibody SRK-181", - "Aranose", - "Submicron Particle Paclitaxel Sterile Suspension", - "Zinc Finger Nuclease ZFN-603", - "Ipomeanol", - "Elliptinium Acetate", - "Patritumab", - "Aurora A Kinase Inhibitor LY3295668", - "Autologous Prostate Cancer Antigen-expressing Dendritic Cell Vaccine BPX-101", - "FLT3/KIT/CSF1R Inhibitor NMS-03592088", - "Carboxyphenyl Retinamide", - "Daunorubicin", - "Zotiraciclib Citrate", - "Anti-CTLA-4 Monoclonal Antibody ONC-392", - "Pan-FLT3/Pan-BTK Multi-kinase Inhibitor CG-806", - "Navitoclax", - "MET Kinase Inhibitor OMO-1", - "Calcium Release-activated Channel Inhibitor CM4620", - "BTK Inhibitor DTRMWXHS-12", - "Masoprocol", - "Oxidopamine", - "Dabrafenib", - "Autologous Anti-CD19 CAR T-cells IM19", - "Anti-CD32B Monoclonal Antibody BI-1206", - "Autologous Anti-BCMA-CAR-4-1BB-CD3zeta-expressing CD4+/CD8+ T-lymphocytes JCARH125", - "Emactuzumab", - "Onvatilimab", - "PARP 1/2 Inhibitor IMP4297", - "Xeloda", - "Anti-5T4 Antibody-drug Conjugate ASN004", - "Brostacillin Hydrochloride", - "Nurulimab", - "Roducitabine", - "Vindesine", - "Cantuzumab Ravtansine", - "Lutetium Lu 177 DOTA-N3-CTT1403", - "Piposulfan", - "Ametantrone", - "Lupartumab Amadotin", - "Anti-CD38 Monoclonal Antibody TAK-079", - "PI3K-beta Inhibitor GSK2636771", - "Allogeneic Plasmacytoid Dendritic Cells Expressing Lung Tumor Antigens PDC*lung01", - "Azaribine", - "Enadenotucirev-expressing Anti-CD40 Agonistic Monoclonal Antibody NG-350A", - "Acalabrutinib", - "Ambazone", - "Aminoflavone Prodrug AFP464", - "Ribozyme RPI.4610", - "CDK4/6 Inhibitor CS3002", - "Rubitecan", - "Mitochondrial Oxidative Phosphorylation Inhibitor ATR-101", - "Fluorodopan", - "Vocimagene Amiretrorepvec", - "Piritrexim", - "Gemtuzumab Ozogamicin", - "Polyamine Analog SL11093", - "Anti-CD98 Monoclonal Antibody IGN523", - "Anti-TF Monoclonal Antibody ALT-836", - "Eg5 Kinesin-Related Motor Protein Inhibitor ARQ 621", - "DNA Interference Oligonucleotide PNT2258", - "Pipobroman", - "Yttrium Y 90 Monoclonal Antibody MN-14", - "Buserelin", - "Denileukin Diftitox", - "Indoximod Prodrug NLG802", - "HPV Types 16/18 E6/E7-Adenoviral Transduced Autologous Lymphocytes/alpha-Galactosylceramide Vaccine BVAC-C", - "Amustaline Dihydrochloride", - "Recombinant Human Endostatin", - "Glembatumumab Vedotin", - "Sam68 Modulator CWP232291", - "17beta-Hydroxysteroid Dehydrogenase Type 5 Inhibitor ASP9521", - "ALK Inhibitor PLB 1003", - "MEK Inhibitor SHR 7390", - "Resminostat", - "Erlotinib Hydrochloride", - "HER2 Inhibitor TAS0728", - "Trapoxin", - "Anti-CD70 Antibody-drug Conjugate SGN-CD70A", - "Anti-CD33 Antibody-drug Conjugate IMGN779", - "Therapeutic Cancer Vaccine ATP128", - "FGF Receptor Antagonist HGS1036", - "ERK Inhibitor GDC-0994", - "Fluzoparib", - "Immediate-release Onapristone", - "Altretamine", - "Monoclonal Antibody 11D10 Anti-Idiotype Vaccine", - "Monoclonal Antibody 14G2A", - "Brachyury-expressing Yeast Vaccine GI-6301", - "TGFa-PE38 Immunotoxin", - "Autologous B-cell/Monocyte-presenting HER2/neu Antigen Vaccine BVAC-B", - "Daromun", - "iNKT Cell Agonist ABX196", - "Pictilisib Bismesylate", - "Autologous Monocyte-derived Lysate-pulsed Dendritic Cell Vaccine PV-001-DC", - "Anti-ICOS Monoclonal Antibody KY1044", - "Ethyleneimine", - "Ilixadencel", - "Transferrin Receptor-Targeted Liposomal p53 cDNA", - "Perfosfamide", - "iPSC-derived CD16-expressing Natural Killer Cells FT516", - "Sintilimab", - "Teroxirone", - "Multi-AGC Kinase Inhibitor AT13148", - "Cemadotin Hydrochloride", - "CXCR4 Antagonist BL-8040", - "Phenethyl Isothiocyanate", - "Tipapkinogene Sovacivec", - "VEGFR Inhibitor KRN951", - "Fosgemcitabine Palabenamide", - "Anti-HER2/PBD-MA Antibody-drug Conjugate DHES0815A", - "Pibrozelesin Hydrobromide", - "Camidanlumab Tesirine", - "Tariquidar", - "Nanoscale Coordination Polymer Nanoparticles CPI-100", - "Immunomodulator OHR/AVR118", - "Monoclonal Antibody 4B5 Anti-Idiotype Vaccine", - "Talactoferrin Alfa", - "Synchrotope TA2M Plasmid DNA Vaccine", - "Agonistic Anti-OX40 Monoclonal Antibody MEDI6469", - "Lurtotecan", - "Thorium Th 227 Anti-HER2 Monoclonal Antibody BAY2701439", - "Triazene Derivative CB10-277", - "Allogeneic IL13-Zetakine/HyTK-Expressing-Glucocorticoid Resistant Cytotoxic T Lymphocytes GRm13Z40-2", - "Recombinant Human Apolipoprotein(a) Kringle V MG1102", - "IGF-methotrexate Conjugate", - "Actinomycin F1", - "DNMT1 Mixed-Backbone Antisense Oligonucleotide MG 98", - "Telomerase-specific Type 5 Adenovirus OBP-301", - "Hedgehog Inhibitor IPI-609", - "Morinda Citrifolia Fruit Extract", - "Taxane Analogue TPI 287", - "Anti-alpha BCMA/Anti-alpha CD3 T-cell Engaging Bispecific Antibody TNB-383B", - "Anti-PD-L1/IL-15 Fusion Protein KD033", - "Chlorambucil", - "Abemaciclib", - "Anti-alpha5beta1 Integrin Antibody MINT1526A", - "Budigalimab", - "Iodine I 124 Monoclonal Antibody A33", - "Laprituximab Emtansine", - "Afuresertib", - "Akt Inhibitor LY2780301", - "Allogeneic CD56-positive CD3-negative Natural Killer Cells CYNK-001", - "Ethylnitrosourea", - "Anti-PD-1/Anti-PD-L1 Bispecific Antibody IBI318", - "Anti-EGFR Monoclonal Antibody EMD 55900", - "A2A Receptor Antagonist EOS100850", - "Mitomycin A", - "Yttrium Y-90 Ibritumomab Tiuxetan", - "Mifamurtide", - "Anti-LIV-1 Monoclonal Antibody-MMAE Conjugate SGN-LIV1A", - "TAM/c-Met Inhibitor RXDX-106", - "Vedolizumab", - "Lifileucel", - "PRMT5 Inhibitor JNJ-64619178", - "EGFR/HER2 Kinase Inhibitor TAK-285", - "Pirarubicin", - "Alpelisib", - "Azurin", - "Lorukafusp alfa", - "MYC-targeting siRNA DCR-MYC", - "Adenoviral Tumor-specific Neoantigen Priming Vaccine GAd-209-FSP", - "Verapamil", - "CDK2/5/9 Inhibitor CYC065", - "Anti-Neuropilin-1 Monoclonal Antibody MNRP1685A", - "IL-10 Immunomodulator MK-1966", - "MetAP2 Inhibitor APL-1202", - "KRASG12C Inhibitor JNJ-74699157", - "Anti-EGFR/PBD Antibody-drug Conjugate ABBV-321", - "Vorsetzumab Mafodotin", - "JAK Inhibitor INCB047986", - "Milciclib Maleate", - "SuperagonistInterleukin-15", - "Anti-CD73 Monoclonal Antibody CPI-006", - "Pembrolizumab", - "SR-T100 Gel", - "Pegylated Liposomal Mitoxantrone Hydrochloride", - "Anti-EGFR Monoclonal Antibody SCT200", - "Gilteritinib Fumarate", - "Recombinant Leukoregulin", - "Autologous Mesenchymal Stem Cells Apceth_101", - "Tinzaparin Sodium", - "Peginterferon Alfa-2a", - "Anti-CD19/CD3 BiTE Antibody AMG 562", - "Brigatinib", - "Allogeneic GM-CSF-secreting Tumor Vaccine PANC 10.05 pcDNA-1/GM-Neo", - "HDAC6 Inhibitor KA2507", - "PI3K-delta Inhibitor PWT143", - "Anti-GCC Antibody-Drug Conjugate TAK-164", - "BMS-275183", - "Anti-CD47 Monoclonal Antibody IMC-002", - "TGF-beta Receptor 1 Kinase Inhibitor YL-13027", - "Boanmycin Hydrochloride", - "Vinzolidine Sulfate", - "ATM Inhibitor M 3541", - "Polyethyleneglycol-7-ethyl-10-hydroxycamptothecin DFP-13318", - "Synthetic Glioblastoma Mutated Tumor-specific Peptides Vaccine Therapy APVAC2", - "Midostaurin", - "p300/CBP Bromodomain Inhibitor CCS1477", - "Genetically Modified Interleukin-12 Transgene-encoding Bifidobacterium longum", - "Forodesine Hydrochloride", - "Artemether Sublingual Spray", - "Acolbifene Hydrochloride", - "Adavosertib", - "FGFR Inhibitor AZD4547", - "Azintuxizumab Vedotin", - "Vinorelbine Tartrate Oral", - "Vadimezan", - "Avelumab", - "Simtuzumab", - "Taletrectinib", - "MDM2 Antagonist ASTX295", - "Oncolytic Adenovirus Ad5-DNX-2401", - "Pegylated Deoxycytidine Analogue DFP-14927", - "PSA/IL-2/GM-CSF Vaccine", - "Revdofilimab", - "Sulfatinib", - "Protein Arginine Methyltransferase 5 Inhibitor PRT543", - "Anti-CD157 Monoclonal Antibody MEN1112", - "Retinyl Palmitate", - "BCG Solution", - "Bozitinib", - "Folate Receptor-Targeted Vinca Alkaloid EC0489", - "Estrogens; Conjugated", - "PI3K Inhibitor GDC0077", - "Tocilizumab", - "CAB-ROR2-ADC BA3021", - "Yttrium Y 90 Monoclonal Antibody BrE-3", - "Zebularine", - "Inproquone", - "Docetaxel Lipid Microspheres", - "Flumatinib", - "Lenvatinib", - "NTRK/ROS1 Inhibitor DS-6051b", - "Leucovorin Calcium", - "Denintuzumab Mafodotin", - "Anti-ErbB3 Monoclonal Antibody AV-203", - "Heterodimeric Interleukin-15", - "Lead Pb 212 TCMC-trastuzumab", - "Tributyrin", - "Tubulin Polymerization Inhibitor VERU-111", - "Arnebia Indigo Jade Pearl Topical Cream", - "Anti-5T4 Antibody-drug Conjugate SYD1875", - "Fumagillin-Derived Polymer Conjugate XMT-1107", - "Quisinostat", - "Retinoic Acid Agent Ro 16-9100", - "Ioflubenzamide I-131", - "Aurora Kinase/VEGFR2 Inhibitor CYC116", - "Anti-CD3/Anti-BCMA Bispecific Monoclonal Antibody JNJ-64007957", - "Perillyl Alcohol", - "Polysaccharide-K", - "Pexastimogene Devacirepvec", - "Anti-PD-1 Fusion Protein AMP-224", - "Virulizin", - "Upamostat", - "Tepoditamab", - "Anti-HER2 Monoclonal Antibody B002", - "Megestrol Acetate", - "N-dihydrogalactochitosan", - "Ceralasertib", - "Glutaminase Inhibitor CB-839 Hydrochloride", - "SHP2 Inhibitor TNO155", - "Valemetostat", - "Zalcitabine", - "Rofecoxib", - "Bomedemstat", - "Trabedersen", - "Cenersen", - "Ozarelix", - "Clinical Trial", - "Anti-TGF-beta RII Monoclonal Antibody IMC-TR1", - "Personalized Neoantigen DNA Vaccine GNOS-PV01", - "Anti-PD-L1 Monoclonal Antibody RC98", - "Imatinib Mesylate", - "Laniquidar", - "BH3 Mimetic ABT-737", - "Anti-ENPP3/MMAF Antibody-Drug Conjugate AGS-16M8F", - "Ropeginterferon Alfa-2B", - "Tinostamustine", - "PD-1 Inhibitor", - "Sevacizumab", - "Serabelisib", - "Metatinib Tromethamine", - "pan-RAF Kinase Inhibitor CCT3833", - "Vatalanib Succinate", - "Etoprine", - "MET Tyrosine Kinase Inhibitor SAR125844", - "Odronextamab", - "Oxidative Phosphorylation Inhibitor IM156", - "Dezaguanine Mesylate", - "Anti-HER2 Antibody-drug Conjugate BAT8001", - "EGFR Mutant-specific Inhibitor ZN-e4", - "Vorasidenib", - "Alpha-Thioguanine Deoxyriboside", - "Cordycepin", - "Anti-PD-1 Antibody-interleukin-21 Mutein Fusion Protein AMG 256", - "Anti-PD-L1 Monoclonal Antibody BGB-A333", - "Nilotinib Hydrochloride Monohydrate", - "Selonsertib", - "Anti-CD70 CAR-expressing T Lymphocytes", - "Antimetabolite FF-10502", - "Fosquidone", - "MET x MET Bispecific Antibody REGN5093", - "Anti-GARP Monoclonal Antibody ABBV-151", - "Mivebresib", - "SHP2 Inhibitor JAB-3068", - "Buparlisib", - "Lipid Nanoparticle Encapsulating mRNAs Encoding Human OX40L/IL-23/IL-36gamma mRNA-2752", - "Sacubitril/Valsartan", - "Liposome", - "Anti-APRIL Monoclonal Antibody BION-1301", - "Imifoplatin", - "Orelabrutinib", - "Recombinant Thyroglobulin", - "Raloxifene Hydrochloride", - "CD123-specific Targeting Module TM123", - "Hycanthone", - "Brontictuzumab", - "TSP-1 Mimetic ABT-510", - "Tubulin-Binding Agent SSR97225", - "Prostate Health Cocktail Dietary Supplement", - "Eg5 Kinesin-Related Motor Protein Inhibitor 4SC-205", - "Thioguanine Anhydrous", - "Imidazole-Pyrazole", - "Tretazicar", - "Dromostanolone Propionate", - "Autologous Anti-CD20 CAR Transduced CD4/CD8 Enriched T-cells MB-CART20.1", - "HAAH Lambda phage Vaccine SNS-301", - "Oral Cancer Vaccine V3-OVA", - "Zalutumumab", - "DEC-205/NY-ESO-1 Fusion Protein CDX-1401", - "Synthetic Plumbagin PCUR-101", - "Plinabulin", - "Streptozocin", - "Tarextumab", - "KSP Inhibitor SB-743921", - "Cordycepin Triphosphate", - "Interferon Alfa-2B", - "Tafasitamab", - "Immune Checkpoint Inhibitor ASP8374", - "Cintirorgon", - "Atezolizumab", - "Defactinib Hydrochloride", - "TIGIT Inhibitor M6223", - "BRAF Inhibitor PLX8394", - "Multi-epitope Anti-folate Receptor Peptide Vaccine TPIV 200", - "I 131 Monoclonal Antibody F19", - "N;N-Dibenzyl Daunomycin", - "Oral Hsp90 Inhibitor IPI-493", - "MEK 1/2 Inhibitor AS703988/MSC2015103B", - "Trimetrexate Glucuronate", - "Neratinib", - "Anti-HER3 Monoclonal Antibody GSK2849330", - "Bcl-Xs Adenovirus Vaccine", - "Tamoxifen", - "Bizalimogene Ralaplasmid", - "Anti-NaPi2b Monoclonal Antibody XMT-1535", - "Interferon Alfa-N3", - "Taselisib", - "EGFR Inhibitor TY-9591", - "Radgocitabine", - "Cryptophycin", - "Dynemicin", - "LRP5 Antagonist BI 905681", - "HER-2-positive B-cell Peptide Antigen P467-DT-CRM197/Montanide Vaccine IMU-131", - "Mifepristone", - "Picrasinoside H", - "Lutetium Lu-177 Girentuximab", - "Glycooptimized Trastuzumab-GEX", - "Racotumomab", - "MET Tyrosine Kinase Inhibitor PF-04217903", - "Autologous Peripheral Blood Lymphocytes from Ibrutinib-treated Chronic Lymphocytic Leukemia Patients IOV-2001", - "Axl/Mer Inhibitor PF-07265807", - "Vistusertib", - "Renal Cell Carcinoma Peptides Vaccine IMA901", - "Tidutamab", - "Vilaprisan", - "O-Chloroacetylcarbamoylfumagillol", - "Amuvatinib", - "Sustained-release Mitomycin C Hydrogel Formulation UGN-102", - "Mivobulin", - "Alvocidib", - "Wee1 Kinase Inhibitor Debio 0123", - "EGFR/HER2 Inhibitor DZD9008", - "Fms/Trk Tyrosine Kinase Inhibitor PLX7486 Tosylate", - "Fenretinide", - "Anti-ErbB3 Monoclonal Antibody REGN1400", - "VEGFR2/PDGFR/c-Kit/Flt-3 Inhibitor SU014813", - "huBC1-huIL12 Fusion Protein AS1409", - "Src Kinase Inhibitor KX2-391", - "BCG Tokyo-172 Strain Solution", - "Amsacrine", - "Epitiostanol", - "Ningetinib Tosylate", - "Tyrosine Kinase Inhibitor", - "Autologous Anti-kappa Light Chain CAR-CD28-expressing T-lymphocytes", - "IDO/TDO Inhibitor LY-01013", - "Tubercidin", - "Iodine I 131 Monoclonal Antibody F16SIP", - "LMB-7 Immunotoxin", - "Akt/ERK Inhibitor ONC201", - "Pioglitazone Hydrochloride", - "Taxane Compound", - "PI3K-delta Inhibitor INCB050465", - "Semaxanib", - "Ganoderma lucidum Spores Powder Capsule", - "Apomab", - "Pipendoxifene", - "ASP4132", - "Aurora Kinase Inhibitor MLN8054", - "Multifunctional/Multitargeted Anticancer Agent OMN54", - "PRMT5 Inhibitor PRT811", - "Paclitaxel Injection Concentrate for Nanodispersion", - "Paclitaxel PPE Microspheres", - "Oral Picoplatin", - "Anti-human GITR Monoclonal Antibody TRX518", - "Ribosome-Inactivating Protein CY503", - "Telisotuzumab", - "Niacinamide", - "Panulisib", - "Triapine", - "Gamboge Resin Extract TSB-9-W1", - "Recombinant Interleukin-6", - "Benzaldehyde Dimethane Sulfonate", - "Phosphorodiamidate Morpholino Oligomer AVI-4126", - "PI3K p110beta/delta Inhibitor KA2237", - "Autologous Anti-PD-1 Antibody-activated Tumor-infiltrating Lymphocytes", - "Non-Small Cell Lung Cancer mRNA-Derived Vaccine CV9201", - "Brivudine Phosphoramidate", - "Momelotinib", - "Multi-kinase Inhibitor XL092", - "Anti-LIF Monoclonal Antibody MSC-1", - "Sulofenur", - "Actinium Ac 225-FPI-1434", - "Glioblastoma Multiforme Multipeptide Vaccine IMA950", - "AKR1C3-activated Prodrug OBI-3424", - "Phenethyl Isothiocyanate-containing Watercress Juice", - "Veltuzumab", - "Anti-A33 Monoclonal Antibody KRN330", - "Anti-OX40 Agonist Monoclonal Antibody PF-04518600", - "Talampanel", - "Deslorelin", - "Hexylresorcinol", - "Recombinant Human Plasminogen Kringle 5 Domain ABT 828", - "Delolimogene Mupadenorepvec", - "Anti-hepcidin Monoclonal Antibody LY2787106", - "Entolimod", - "Enavatuzumab", - "Mercaptopurine Oral Suspension", - "Phaleria macrocarpa Extract DLBS-1425", - "Anti-GD2 Monoclonal Antibody MORAb-028", - "Tiomolibdate Diammonium", - "CDK4/6 Inhibitor SHR6390", - "Live-attenuated Listeria monocytogenes-encoding EGFRvIII-NY-ESO-1 Vaccine ADU-623", - "Calicheamicin Gamma 1I", - "Anti-IL-1 alpha Monoclonal Antibody MABp1", - "OxPhos Inhibitor VLX600", - "Bruceanol D", - "Bufalin", - "Thorium Th 227 Anetumab Corixetan", - "Lipid Nanoparticle Encapsulated mRNAs Encoding Human IL-12A/IL-12B MEDI-1191", - "MDM2 Inhibitor KRT-232", - "Liposome-encapsulated OSI-7904", - "Mavorixafor", - "Nintedanib", - "BL22 Immunotoxin", - "Abituzumab", - "Cisplatin Liposomal", - "Soy Isoflavones", - "Androgen Receptor Antagonist BAY 1161116", - "Anti-CD40L Fc-Fusion Protein BMS-986004", - "Guadecitabine", - "Lestaurtinib", - "Milk Thistle", - "Opaganib", - "Angiopoietin-2-specific Fusion Protein PF-04856884", - "Semustine", - "Cactinomycin", - "Irinotecan-Eluting Beads", - "Ex Vivo-expanded Autologous T Cells IMA101", - "IDH1(R132) Inhibitor IDH305", - "Fluvastatin", - "Hsp90 Inhibitor XL888", - "Didox", - "IDO1 Inhibitor PF-06840003", - "Monoclonal Antibody AK002", - "Yttrium Y 90 Daclizumab", - "Futuximab", - "Multi-glioblastoma-peptide-targeting Autologous Dendritic Cell Vaccine ICT-107", - "Agonistic Anti-OX40 Monoclonal Antibody INCAGN01949", - "Personalized Peptide Cancer Vaccine NEO-PV-01", - "Niclosamide", - "Sobuzoxane", - "Multi-epitope HER2 Peptide Vaccine H2NVAC", - "Infliximab", - "Mutant-selective EGFR Inhibitor PF-06459988", - "Tomivosertib", - "BET Bromodomain Inhibitor ZEN-3694", - "Y 90 Monoclonal Antibody m170", - "Anti-B7-H3 Antibody DS-5573a", - "Antrodia cinnamomea Supplement", - "Menin-MLL Interaction Inhibitor SNDX-5613", - "Trastuzumab", - "Anti-HER2 Monoclonal Antibody CT-P6", - "Cevipabulin Fumarate", - "TRAIL Receptor Agonist ABBV-621", - "Colloidal Gold-Bound Tumor Necrosis Factor", - "Mibefradil Dihydrochloride", - "Algenpantucel-L", - "FLT3 Inhibitor HM43239", - "iNOS Dimerization Inhibitor ASP9853", - "Ipafricept", - "Mitoclomine", - "Androgen Receptor Degrader ARV-110", - "Indisulam", - "Serine/Threonine Kinase Inhibitor XL418", - "Ubenimex", - "PSA/PSMA DNA Plasmid INO-5150", - "Dexamethasone Sodium Phosphate", - "Tyrosine Kinase Inhibitor TL-895", - "Yttrium Y 90 Glass Microspheres", - "AXL/ FLT3/VEGFR2 Inhibitor KC1036", - "Cationic Liposome-Encapsulated Paclitaxel", - "HPV 16 E6/E7-encoding Arenavirus Vaccine HB-202", - "Immunomodulatory Agent CC-11006", - "Selective Estrogen Receptor Modulator CC-8490", - "Monoclonal Antibody A33", - "Abiraterone", - "Anti-5T4 Antibody-Drug Conjugate PF-06263507", - "SBIL-2", - "9H-Purine-6Thio-98D", - "LSD1 Inhibitor GSK2879552", - "Anti-CD73 Monoclonal Antibody BMS-986179", - "Cyclosporine", - "Vapreotide", - "Vibostolimab", - "Troxacitabine Nucleotide Prodrug MIV-818", - "Resveratrol", - "MDM2 Antagonist RO5045337", - "Anti-HER2 Monoclonal Antibody/Anti-CD137Anticalin Bispecific Fusion Protein PRS-343", - "Colorectal Tumor-Associated Peptides Vaccine IMA910", - "HER2 Inhibitor CP-724;714", - "Transferrin Receptor-Targeted Anti-RRM2 siRNA CALAA-01", - "Acai Berry Juice", - "Ricolinostat", - "Dengue Virus Adjuvant PV-001-DV", - "Sorafenib Tosylate", - "Penclomedine", - "Polyandrol", - "Trifluridine", - "Rebastinib Tosylate", - "pan-PI3K Inhibitor CLR457", - "Rhenium Re 188 BMEDA-labeled Liposomes", - "Elacytarabine", - "Labetuzumab Govitecan", - "Peptide 946 Melanoma Vaccine", - "Modified Vaccinia Ankara-vectored HPV16/18 Vaccine JNJ-65195208", - "Oraxol", - "Oncolytic HSV-1 rRp450", - "STING Agonist IMSA101", - "MDM2 Inhibitor AMGMDS3", - "GITR Agonist MEDI1873", - "Tezacitabine", - "Anti-CD25 Monoclonal Antibody RO7296682", - "Hsp90 Inhibitor MPC-3100", - "Taurolidine", - "CD80-Fc Fusion Protein ALPN-202", - "Anti-CD47 Monoclonal Antibody AO-176", - "Irinotecan Sucrosofate", - "Bafetinib", - "Roquinimex", - "Erythrocyte-encapsulated L-asparaginase Suspension", - "Yttrium-90 Polycarbonate Brachytherapy Plaque", - "Febuxostat", - "Taminadenant", - "PTEF-b/CDK9 Inhibitor BAY1251152", - "Samalizumab", - "CYP17/CYP11B2 Inhibitor LAE001", - "Fas Receptor Agonist APO010", - "Superoxide Dismutase Mimetic GC4711", - "Wnt Signaling Pathway Inhibitor SM08502", - "Urelumab", - "Anti-PD-L1/Anti-4-1BB Bispecific Monoclonal Antibody GEN1046", - "Vaccine-Sensitized Draining Lymph Node Cells", - "PI3K-delta Inhibitor HMPL 689", - "Bruceanol C", - "Lipid Encapsulated Anti-PLK1 siRNA TKM-PLK1", - "Anti-OX40 Hexavalent Agonist Antibody INBRX-106", - "Pan-TRK Inhibitor ONO-7579", - "Clofarabine", - "Trastuzumab Emtansine", - "T900607", - "Nab-paclitaxel", - "Glioma Lysate Vaccine GBM6-AD", - "Aurora Kinase Inhibitor PF-03814735", - "BRAF/EGFR Inhibitor BGB-283", - "Fianlimab", - "Monoclonal Antibody NEO-201", - "Doxorubicin-HPMA Conjugate", - "Sunitinib Malate", - "Fazarabine", - "Amcasertib", - "IDO1 Inhibitor KHK2455", - "Anti-PD-L1/TIM-3 Bispecific Antibody LY3415244", - "Anti-CD19/CD3 Tetravalent Antibody AFM11", - "Maekmoondong-tang", - "Liarozole Hydrochloride", - "Dasatinib", - "Dolastatin 10", - "CCR2 Antagonist PF-04136309", - "PARP Inhibitor CEP-9722", - "Talabostat", - "Galiximab", - "Artesunate", - "Ivaltinostat", - "SIRPa-Fc-CD40L Fusion Protein SL-172154", - "Bosutinib Monohydrate", - "Isocoumarin NM-3", - "Rilimogene Galvacirepvec/Rilimogene Glafolivec", - "Aprutumab", - "Puromycin Hydrochloride", - "Idetrexed", - "NA17-A Antigen", - "4-Thio-2-deoxycytidine", - "Letolizumab", - "Lisavanbulin", - "Lucitanib", - "Siremadlin", - "Suramin Sodium", - "Tipifarnib", - "Autologous CAR-mbIL15-Safety Switch T-cells PRGN-3006", - "BCMA-CD19 Compound CAR T Cells", - "Glutamine Antagonist DRP-104", - "Palifosfamide", - "Parsatuzumab", - "Lipid Nanoparticle Encapsulating Glutathione S-transferase P siRNA NBF-006", - "Y 90 Monoclonal Antibody M195", - "EGb761", - "Anti-CD20 Monoclonal Antibody TL011", - "Toremifene Citrate", - "BP-Cx1-Platinum Complex BP-C1", - "Patidegib Topical Gel", - "Simurosertib", - "Recombinant Humanized Anti-HER-2 Bispecific Monoclonal Antibody MBS301", - "siRNA-transfected Peripheral Blood Mononuclear Cells APN401", - "FAK/ALK/ROS1 Inhibitor APG-2449", - "Iniparib", - "Dactolisib Tosylate", - "VLP-encapsulated TLR9 Agonist CMP-001", - "Ziv-Aflibercept", - "BC-819 Plasmid/Polyethylenimine Complex", - "Ascrinvacumab", - "Atiprimod", - "Bcl-2 Inhibitor S65487", - "HPV E6/E7 DNA Vaccine GX-188E", - "PI3K-alpha Inhibitor MEN1611", - "Glecaprevir/Pibrentasvir", - "Oxidative Phosphorylation Inhibitor IACS-010759", - "other", - "Anti-PD-L1 Monoclonal Antibody FAZ053", - "Geldanamycin", - "Ketotrexate", - "Muparfostat", - "Orantinib", - "Pomegranate Liquid Extract", - "Tamibarotene", - "Tilogotamab", - "Camsirubicin", - "Anti-Claudin18.2 Monoclonal Antibody TST001", - "Mevociclib", - "Mitomycin B", - "Triamcinolone Hexacetonide", - "p53-HDM2 Protein-protein Interaction Inhibitor APG-115", - "I 131 Monoclonal Antibody CC49", - "Satraplatin", - "Afatinib Dimaleate", - "Zandelisib", - "Deuteporfin", - "hTERT Vaccine V934/V935", - "Anti-VEGF Anticalin PRS-050-PEG40", - "Anti-CD137 Agonistic Monoclonal Antibody ATOR-1017", - "Anti-PD-L1 Monoclonal Antibody IMC-001", - "Tegavivint", - "Toripalimab", - "Phosphoramide Mustard", - "Vemurafenib", - "Autologous Mesothelin-specific Human mRNA CAR-transfected PBMCs MCY-M11", - "Anti-CD30 Monoclonal Antibody MDX-1401", - "ERK1/2 Inhibitor HH2710", - "Zanolimumab", - "Ezabenlimab", - "Banoxantrone", - "CDK7 Inhibitor CT7001", - "Apalutamide", - "Cisplatin-E Therapeutic Implant", - "Trastuzumab Monomethyl Auristatin F", - "Amrubicin Hydrochloride", - "Nutlin-3a", - "Tremelimumab", - "Anti-Met Monoclonal Antibody Mixture Sym015", - "11D10 AluGel Anti-Idiotype Monoclonal Antibody", - "Cinacalcet Hydrochloride", - "Natural Killer Cells ZRx101", - "Samotolisib", - "ATM Kinase Inhibitor AZD0156", - "MKNK1 Inhibitor BAY 1143269", - "Miltefosine", - "Uzansertib", - "Kanglaite", - "Anti-CD3/CD20 Bispecific Antibody GEN3013", - "HIF-2alpha Inhibitor PT2977", - "Inodiftagene Vixteplasmid", - "FLT3 Tyrosine Kinase Inhibitor TTT-3002", - "Anti-ErbB3 Antibody ISU104", - "Angiogenesis/Heparanase Inhibitor PG545", - "Therapeutic Liver Cancer Peptide Vaccine IMA970A", - "Fenretinide Lipid Matrix", - "Opucolimab", - "c-raf Antisense Oligonucleotide ISIS 5132", - "3'-dA Phosphoramidate NUC-7738", - "Anti-SLITRK6 Monoclonal Antibody-MMAE Conjugate AGS15E", - "Autologous Genetically-modified MAGE-A4 C1032 T Cells", - "Detirelix", - "Anti-CTLA-4 Monoclonal Antibody REGN4659", - "Testosterone Enanthate", - "Oncolytic Newcastle Disease Virus MEDI5395", - "Irofulven", - "Selatinib Ditosilate", - "EED Inhibitor MAK683", - "Cryptophycin 52", - "Pyruvate Kinase M2 Isoform Activator TP-1454", - "Tosedostat", - "Not Reported", - "Mutant IDH1 Inhibitor DS-1001", - "Anti-ACTR/4-1BB/CD3zeta-Viral Vector-transduced Autologous T-Lymphocytes ACTR087", - "Nutraceutical TBL-12", - "Apitolisib", - "Nivolumab", - "SMO Protein Inhibitor ZSP1602", - "Sorafenib", - "Anti-FCRH5/CD3 BiTE Antibody BFCR4350A", - "Cetuximab-IR700 Conjugate RM-1929", - "Poly-gamma Glutamic Acid", - "Beta-Glucan", - "Anti-CD47 Monoclonal Antibody IBI188", - "Pyroxamide", - "Mezagitamab", - "Pegylated SN-38 Conjugate PLX038", - "Pyruvate Kinase Inhibitor TLN-232", - "Valspodar", - "Bemarituzumab", - "Anti-EphA2 Antibody-directed Liposomal Docetaxel Prodrug MM-310", - "EphA2-targeting Bicycle Toxin Conjugate BT5528", - "STING Agonist SB 11285", - "mTOR Inhibitor GDC-0349", - "Icrucumab", - "Adecatumumab", - "Prostatic Acid Phosphatase-Sargramostim Fusion Protein PA2024", - "Nimesulide-Hyaluronic Acid Conjugate CA102N", - "Actinium Ac-225 Anti-PSMA Monoclonal Antibody J591", - "Triethylenemelamine", - "Radiolabeled CC49", - "Adenosine A2A Receptor Antagonist NIR178", - "Hypoxia-activated Prodrug TH-4000", - "LSD1 Inhibitor RO7051790", - "Ancitabine", - "Caffeic Acid Phenethyl Ester", - "Anti-HER2 ADC DS-8201a", - "Enpromate", - "Etanidazole", - "MNK1/2 Inhibitor ETC-1907206", - "c-Met Inhibitor GST-HG161", - "Motexafin Lutetium", - "Mps1 Inhibitor BOS172722", - "Sulindac", - "Selective Estrogen Receptor Degrader AZD9496", - "Amblyomin-X", - "Nilotinib", - "Iadademstat", - "VEGF Inhibitor PTC299", - "Sodium Salicylate", - "Foslinanib Disodium", - "Anti-PD-1 Monoclonal Antibody BCD-100", - "HLA-A2-restricted Melanoma-specific Peptides Vaccine GRN-1201", - "CXCR2 Antagonist QBM076", - "HSP90alpha/beta Inhibitor TAS-116", - "EP4 Antagonist ONO-4578", - "Morpholinodoxorubicin", - "Monoclonal Microbial EDP1503", - "Anti-PSMA/PBD ADC MEDI3726", - "Parsaclisib", - "Miptenalimab", - "Anti-EGFR Monoclonal Antibody Mixture MM-151", - "Tivozanib", - "Gimeracil", - "Aurora Kinase Inhibitor TTP607", - "Camptothecin", - "Acyclic Nucleoside Phosphonate Prodrug ABI-1968", - "Radotinib Hydrochloride", - "Methotrexate-E Therapeutic Implant", - "Oral Microencapsulated Diindolylmethane", - "Crolibulin", - "Intiquinatine", - "GS/pan-Notch Inhibitor BMS-986115", - "Nazartinib", - "Anti-LAG-3/PD-L1 Bispecific Antibody FS118", - "CYP11A1 inhibitor ODM-208", - "HDM2 Inhibitor HDM201", - "Lutetium Lu 177 Monoclonal Antibody CC49", - "Autologous Bone Marrow-derived CD34/CXCR4-positive Stem Cells AMR-001", - "HPV 16 E7 Antigen-expressing Lactobacillis casei Vaccine BLS-ILB-E710c", - "Esorubicin", - "Anti-EGFR TAP Antibody-drug Conjugate IMGN289", - "Anti-Lewis B/Lewis Y Monoclonal Antibody GNX102", - "Demplatin Pegraglumer", - "Ovapuldencel-T", - "Selective Androgen Receptor Modulator RAD140", - "Fostriecin", - "Immunoconjugate RO5479599", - "Dual Variable Domain Immunoglobulin ABT-165", - "10-Deacetyltaxol", - "MCL-1 inhibitor AMG 397", - "Calaspargase Pegol-mknl", - "Androgen Receptor/Glucocorticoid Receptor Antagonist CB-03-10", - "Batimastat", - "CDK Inhibitor SNS-032", - "Giredestrant", - "Aurora kinase A/B inhibitor TT-00420", - "Bivalent BRD4 Inhibitor AZD5153", - "Immunotherapy Regimen MKC-1106-MT", - "Rolinsatamab Talirine", - "BRAFV600/PI3K Inhibitor ASN003", - "Autologous Anti-CD19 CAR T-cells 19(T2)28z1xx", - "Lobaplatin", - "Anti-CEACAM6 Antibody BAY1834942", - "Iso-fludelone", - "Dezaguanine", - "Ieramilimab", - "Glucocorticoid Receptor Antagonist ORIC-101", - "Anti-KSP/Anti-VEGF siRNAs ALN-VSP02", - "Compound Kushen Injection", - "Anti-CD47/CD19 Bispecific Monoclonal Antibody TG-1801", - "MAGE-A1-specific T Cell Receptor-transduced Autologous T-cells", - "Anti-EGFR Monoclonal Antibody GC1118", - "Thiodiglycol", - "Nelipepimut-S Plus GM-CSF Vaccine", - "Multi-kinase Inhibitor TPX-0022", - "Anti-GD3 Antibody-drug Conjugate PF-06688992", - "Colorectal Cancer Peptide Vaccine PolyPEPI1018", - "INO-1001", - "Mibefradil", - "c-Met Inhibitor MK8033", - "Halofuginone", - "Iodine I 131 Omburtamab", - "Eltanexor", - "Liposomal Bcl-2 Antisense Oligonucleotide BP1002", - "Methotrexate-Encapsulating Autologous Tumor-Derived Microparticles", - "Monoclonal Antibody CEP-37250/KHK2804", - "Progestational IUD", - "Ocaratuzumab", - "Extended Release Metformin Hydrochloride", - "Lodapolimab", - "Yttrium Y 90 Tabituximab Barzuxetan", - "Anti-HER3 Antibody-drug Conjugate U3 1402", - "Bazedoxifene", - "Huaier Extract Granule", - "Felzartamab", - "Cediranib", - "Ondansetron Hydrochloride", - "Synchrovax SEM Plasmid DNA Vaccine", - "Volasertib", - "Cetuximab Sarotalocan", - "3'-C-ethynylcytidine", - "Fotemustine", - "Anti-CD37 Antibody-Drug Conjugate IMGN529", - "DACH Polymer Platinate AP5346", - "Pinatuzumab Vedotin", - "Tabelecleucel", - "Triptolide Analog", - "Alpha-Gal AGI-134", - "Listeria monocytogenes-LLO-PSA Vaccine ADXS31-142", - "Mcl-1 Inhibitor AZD5991", - "Anti-fucosyl-GM1 Monoclonal Antibody BMS-986012", - "Allogeneic CD22-specific Universal CAR-expressing T-lymphocytes UCART22", - "Autologous Clonal Neoantigen T Cells ATL001", - "BET Inhibitor GS-5829", - "Ganglioside GM2", - "Pidilizumab", - "Tin Ethyl Etiopurpurin", - "Firtecan Pegol", - "Anti-CTLA-4 Monoclonal Antibody MK-1308", - "Tazemetostat", - "Orvacabtagene Autoleucel", - "Bemcentinib", - "Galunisertib", - "Formestane", - "PGG Beta-Glucan", - "Anti-ICOS Agonist Antibody GSK3359609", - "Etidronate-Cytarabine Conjugate MBC-11", - "Rosabulin", - "DPT/BCG/Measles/Serratia/Pneumococcus Vaccine", - "Oncolytic Virus ASP9801", - "Bizelesin", - "Ranolazine", - "Anti-IGF-1R Recombinant Monoclonal Antibody BIIB022", - "Aziridinylbenzoquinone RH1", - "Interleukin-15 Fusion Protein BJ-001", - "Marimastat", - "Indusatumab Vedotin", - "Sagopilone", - "IGF-1R Inhibitor PL225B", - "Lefitolimod", - "Halichondrin B", - "IDO1/TDO2 Inhibitor DN1406131", - "Annamycin", - "Rabusertib", - "Topoisomerase-1 Inhibitor LMP744", - "mRNA-derived Lung Cancer Vaccine BI 1361849", - "Androgen Receptor Inhibitor EPI-7386", - "BET Inhibitor INCB057643", - "Coenzyme Q10", - "Cetuximab", - "Corticorelin Acetate", - "Mitomycin", - "XIAP/cIAP1 Antagonist ASTX660", - "Telisotuzumab Vedotin", - "Anti-angiopoietin Monoclonal Antibody AMG 780", - "CEBPA-targeting saRNA MTL-CEBPA Liposome", - "Tasidotin", - "Topical Celecoxib", - "Macrocycle-bridged STING Agonist E7766", - "Partially Engineered T-regulatory Cell Donor Graft TRGFT-201", - "Trastuzumab-TLR 7/8 Agonist BDC-1001", - "Tetrahydrouridine", - "Patritumab Deruxtecan", - "Monoclonal Antibody CAL", - "Ponatinib Hydrochloride", - "Autologous Universal CAR-expressing T-lymphocytes UniCAR02-T", - "Silatecan AR-67", - "Iodine I 131 Apamistamab", - "Allogeneic Third-party Suicide Gene-transduced Anti-HLA-DPB1*0401 CD4+ T-cells CTL 19", - "HPV DNA Plasmids Therapeutic Vaccine VGX-3100", - "Cyclodextrin-Based Polymer-Camptothecin CRLX101", - "Immunotherapeutic GSK1572932A", - "Autologous Anti-CD19 Chimeric Antigen Receptor T-cells AUTO1", - "Autologous Tumor Infiltrating Lymphocytes LN-144", - "CD73 Inhibitor AB680", - "Pamidronic Acid", - "Berubicin Hydrochloride", - "Etoposide", - "Melphalan Hydrochloride", - "Pegdinetanib", - "Pralatrexate", - "Lomustine", - "JAK2/Src Inhibitor NS-018", - "IL-12-expressing HSV-1 NSC 733972", - "H-ras Antisense Oligodeoxynucleotide ISIS 2503", - "Lutetium Lu-177 Capromab", - "Lutetium Lu 177-NeoB", - "CDK9 Inhibitor AZD4573", - "Autologous Dendritic Cell Vaccine ACT2001", - "Lenalidomide Analog KPG-121", - "Cord Blood-derived Expanded Natural Killer Cells PNK-007", - "Girodazole", - "Istiratumab", - "Monoclonal Antibody HuPAM4", - "Recombinant Interleukin-2", - "Yttrium Y-90 Epratuzumab Tetraxetan", - "Ganetespib", - "Foretinib", - "Anti-CD20 Monoclonal Antibody B001", - "Demcizumab", - "Cerdulatinib", - "MDR Modulator CBT-1", - "Serplulimab", - "Trastuzumab/Tesirine Antibody-drug Conjugate ADCT-502", - "Gimatecan", - "Temsirolimus", - "Anti-CTLA-4/OX40 Bispecific Antibody ATOR-1015", - "Liposomal Eribulin Mesylate", - "Rocakinogene Sifuplasmid", - "Vecabrutinib", - "Pimurutamab", - "Thymidylate Synthase Inhibitor CX1106", - "Mycophenolic Acid", - "HSP90-targeted SN-38 Conjugate PEN-866", - "SIRPa-Fc Fusion Protein TTI-621", - "Recombinant Fas Ligand", - "Ponatinib", - "Monoclonal Antibody 3622W94", - "FPV Vaccine CV301", - "Acridine Carboxamide", - "Microparticle-encapsulated CYP1B1-encoding DNA Vaccine ZYC300", - "Zalifrelimab", - "PI3K-delta Inhibitor AMG 319", - "MCL-1 Inhibitor ABBV-467", - "Romidepsin", - "Methoxsalen", - "Tozasertib Lactate", - "Doxifluridine", - "Cytochlor", - "Nelipepimut-S", - "Allogeneic CD3- CD19- CD57+ NKG2C+ NK Cells FATE-NK100", - "Hsp90-targeted Photosensitizer HS-201", - "Celecoxib", - "Polyamine Analogue PG11047", - "Retelliptine", - "THL-P", - "IAP Inhibitor HGS1029", - "Xentuzumab", - "I 131 Monoclonal Antibody Lym-1", - "V930 Vaccine", - "Nolatrexed Dihydrochloride", - "Dual-affinity B7-H3/CD3-targeted Protein MGD009", - "JAK2 Inhibitor BMS-911543", - "Anti-CTLA-4 Monoclonal Antibody ADU-1604", - "Octreotide", - "CDK Inhibitor R547", - "Givinostat", - "Cancer Peptide Vaccine S-588410", - "Ethaselen", - "Autologous Anti-EGFR CAR-transduced CXCR 5-modified T-lymphocytes", - "Zanidatamab", - "Autologous Anti-CD19/CD20 Bispecific Nanobody-based CAR-T cells", - "Nortopixantrone", - "Immunocytokine NHS-IL12", - "Pelitrexol", - "Ubidecarenone Nanodispersion BPM31510n", - "MUC1-targeted Peptide GO-203-2C", - "Nesvacumab", - "Androgen Receptor Antagonist SHR3680", - "Anti-CTLA4 Antibody Fc Fusion Protein KN044", - "Anti-HER2/Anti-HER3 Bispecific Monoclonal Antibody MCLA-128", - "Human MHC Non-Restricted Cytotoxic T-Cell Line TALL-104", - "Anti-PD-1/Anti-CTLA4 DART Protein MGD019", - "Mechlorethamine Hydrochloride Gel", - "S1P Receptor Agonist KRP203", - "Tegafur", - "Anti-sCLU Monoclonal Antibody AB-16B5", - "ATM Kinase Inhibitor AZD1390", - "Enfortumab Vedotin", - "HIF2a RNAi ARO-HIF2", - "Alpha V Beta 8 Antagonist PF-06940434", - "Mofarotene", - "CXCR4 Inhibitor Q-122", - "Motesanib Diphosphate", - "Autologous Anti-CD19 CAR-CD3zeta-4-1BB-expressing T-cells PZ01", - "Personalized Cancer Vaccine RO7198457", - "Bruceanol E", - "Protein Stabilized Liposomal Docetaxel Nanoparticles", - "Lutetium Lu 177 Anti-CA19-9 Monoclonal Antibody 5B1", - "Zolbetuximab", - "Topical Gemcitabine Hydrochloride", - "pan-HER Kinase Inhibitor AC480", - "Hexamethylene Bisacetamide", - "Oxaliplatin", - "Anti-IL-8 Monoclonal Antibody HuMax-IL8", - "Ropidoxuridine", - "Anti-PD-1 Monoclonal Antibody GLS-010", - "Nimustine", - "Arsenic Trioxide Capsule Formulation ORH 2014", - "DNMT1 Inhibitor NTX-301", - "Anti-OX40 Monoclonal Antibody IBI101", - "St. John's Wort", - "Neoantigen-based Therapeutic Cancer Vaccine GRT-R904", - "Rhenium Re-188 Ethiodized Oil", - "DNA-dependent Protein Kinase Inhibitor VX-984", - "Adagloxad Simolenin", - "Nanoparticle Albumin-Bound Docetaxel", - "Iratumumab", - "pan-PI3K/mTOR Inhibitor SF1126", - "Aurora A Kinase Inhibitor TAS-119", - "Anti-CD3/CD7-Ricin Toxin A Immunotoxin", - "Personalized Neoepitope Yeast Vaccine YE-NEO-001", - "Tankyrase Inhibitor STP1002", - "Tilarginine", - "Retaspimycin", - "TLR7 Agonist LHC165", - "HDAC inhibitor CG200745", - "Autologous Anti-BCMA CD8+ CAR T-cells Descartes-11", - "cEt KRAS Antisense Oligonucleotide AZD4785", - "Raf Kinase Inhibitor HM95573", - "Folate Receptor Targeted Epothilone BMS753493", - "KRAS G12C Inhibitor GDC-6036", - "Antisense Oligonucleotide QR-313", - "Urabrelimab", - "EZH2 Inhibitor CPI-1205", - "Ipilimumab", - "Noscapine", - "Bispecific Antibody 2B1", - "8-Azaguanine", - "HDAC Inhibitor CHR-2845", - "MOv-gamma Chimeric Receptor Gene", - "Oncolytic Newcastle Disease Virus Strain PV701", - "Intermediate-affinity Interleukin-2 Receptor Agonist ALKS 4230", - "Fedratinib", - "Anti-CD38 Antibody-drug Conjugate STI-6129", - "Anti-HER2/Anti-CD3 Bispecific Monoclonal Antibody BTRC 4017A", - "Integrin Receptor Antagonist GLPG0187", - "Anti-CD33 Antigen/CD3 Receptor Bispecific Monoclonal Antibody AMV564", - "MARCKS Protein Inhibitor BIO-11006", - "Astatine At 211 Anti-CD45 Monoclonal Antibody BC8-B10", - "Ispinesib", - "Amonafide L-Malate", - "Gastrin Immunotoxin", - "Talmapimod", - "Rivoceranib", - "Anti-LGR5 Monoclonal Antibody BNC101", - "MDM2 Antagonist RO6839921", - "Uracil Ointment", - "Anti-BCMA SparX Protein Plus BCMA-directed Anti-TAAG ARC T-cells CART-ddBCMA", - "Padeliporfin", - "Aclacinomycin B", - "Anti-HER2-vc0101 ADC PF-06804103", - "Anti-LAG-3 Monoclonal Antibody REGN3767", - "Matuzumab", - "Aviscumine", - "HIF-2alpha Inhibitor PT2385", - "Mobocertinib", - "Apilimod Dimesylate Capsule", - "Glumetinib", - "Iboctadekin", - "Gemcitabine Prodrug LY2334737", - "XPO1 Inhibitor SL-801", - "Goserelin", - "Ulixertinib", - "Gutolactone", - "LRP5/6 Antagonist BI 905677", - "Recombinant Modified Vaccinia Ankara-5T4 Vaccine", - "Gamma-Secretase Inhibitor LY3039478", - "Bavituximab", - "HER2 ECD+TM Virus-like Replicon Particles Vaccine AVX901", - "Anti-gremlin-1 Monoclonal Antibody UCB6114", - "Pegylated Recombinant Human Hyaluronidase PH20", - "CDK4/6 Inhibitor", - "HDAC Inhibitor AR-42", - "Efatutazone", - "Protein Tyrosine Kinase 2 Inhibitor IN10018", - "Terameprocol", - "Copanlisib Hydrochloride", - "Carmustine Sustained-Release Implant Wafer", - "Anti-EphA2 Monoclonal Antibody DS-8895a", - "Gonadotropin-releasing Hormone Analog", - "Tenifatecan", - "Anti-ErbB3 Monoclonal Antibody CDX-3379", - "Dactolisib", - "Dusigitumab", - "MAGE-A3 Peptide Vaccine", - "mRNA-based Personalized Cancer Vaccine mRNA-4157", - "Penberol", - "Anti-EGFR/CD16A Bispecific Antibody AFM24", - "Cevipabulin Succinate", - "Folate Receptor-Targeted Tubulysin Conjugate EC1456", - "Maackia amurensis Seed Lectin", - "Anti-CD123 Monoclonal Antibody KHK2823", - "Anti-PLGF Monoclonal Antibody TB-403", - "Anti-human GITR Monoclonal Antibody AMG 228", - "CDC7 Kinase Inhibitor NMS-1116354", - "Cereblon E3 Ubiquitin Ligase Modulating Agent CC-99282", - "Modotuximab", - "Anti-DR5 Agonistic Antibody DS-8273a", - "PLK1 Inhibitor TAK-960", - "Ribonuclease QBI-139", - "Transferrin-CRM107", - "Triazinate", - "Methotrexate", - "Fosifloxuridine Nafalbenamide", - "Anti-PD-1/CD47 Infusion Protein HX009", - "Integrin alpha-2 Inhibitor E7820", - "CD80-Fc Fusion Protein FPT155", - "Pemlimogene Merolisbac", - "Anti-TAG-72 Monoclonal Antibody scFV CC-49/218", - "Allogeneic Natural Killer Cell Line MG4101", - "Short Chain Fatty Acid HQK-1004", - "Ipatasertib", - "Ifabotuzumab", - "Ertumaxomab", - "CL 246738", - "Pomalidomide", - "Olaparib", - "KRAS-MAPK Signaling Pathway Inhibitor JAB-3312", - "Liver X Receptor beta Agonist RGX-104", - "Raloxifene", - "Anti-PSMA Monoclonal Antibody MLN591-DM1 Immunoconjugate MLN2704", - "Asunercept", - "pan-RAF Kinase Inhibitor TAK-580", - "Tyrosine Kinase Inhibitor XL228", - "Allogeneic Renal Cell Carcinoma Vaccine MGN1601", - "2-Hydroxyestradiol", - "Brequinar", - "Anti-LAMP1 Antibody-drug Conjugate SAR428926", - "EBNA-1 inhibitor VK-2019", - "p97 Inhibitor CB-5339", - "Valproic Acid", - "Antibody-drug Conjugate SC-006", - "Nucleolin Antagonist IPP-204106N", - "Epothilone Analog UTD1", - "Yang Yin Fu Zheng", - "Polo-like Kinase 4 Inhibitor CFI-400945 Fumarate", - "Anti-MUC1 Monoclonal Antibody BTH1704", - "Multikinase Inhibitor AT9283", - "Mps1 Inhibitor BAY 1217389", - "Anti-CD19-DM4 Immunoconjugate SAR3419", - "Alpha Galactosylceramide", - "Anti-CD20/CD3 Monoclonal Antibody XmAb13676", - "Avadomide Hydrochloride", - "Oblimersen Sodium", - "Ang2/VEGF-Binding Peptides-Antibody Fusion Protein CVX-241", - "Dacetuzumab", - "Anti-ETBR/MMAE Antibody-Drug Conjugate DEDN6526A", - "Xisomab 3G3", - "EGFR Mutant-specific Inhibitor CK-101", - "Octreotide Pamoate", - "Ruxolitinib", - "SERD SAR439859", - "Tetrathiomolybdate", - "Porcupine Inhibitor RXC004", - "Aminocamptothecin Colloidal Dispersion", - "Erbulozole", - "Anti-CD166 Probody-drug Conjugate CX-2009", - "Itacitinib", - "Navoximod", - "FAK Inhibitor VS-4718", - "Azimexon", - "KRAS Mutant-targeting AMG 510", - "Micro Needle Array-Doxorubicin", - "Ovine Submaxillary Mucin", - "pNGVL4a-Sig/E7(detox)/HSP70 DNA and HPV16 L2/E6/E7 Fusion Protein TA-CIN Vaccine PVX-2", - "Porfiromycin", - "Anti-GnRH Vaccine PEP223", - "Trastuzumab Conjugate BI-CON-02", - "Anti-PD-1 Monoclonal Antibody Sym021", - "GS/pan-Notch Inhibitor AL101", - "Cofetuzumab Pelidotin", - "Siltuximab", - "DNA Plasmid-encoding Interleukin-12/HPV DNA Plasmids Therapeutic Vaccine MEDI0457", - "Tamrintamab Pamozirine", - "HPV-16 E6 Peptides Vaccine/Candida albicans Extract", - "Anti-c-Met Antibody-drug Conjugate TR1801", - "MVA-BN Smallpox Vaccine", - "Vascular Disrupting Agent BNC105", - "Ridaforolimus", - "Gemcitabine-Releasing Intravesical System", - "GSK-3 Inhibitor LY2090314", - "Anti-HER2-DM1 Antibody-drug Conjugate GQ1001", - "CSF1R Inhibitor PLX73086", - "C-myb Antisense Oligonucleotide G4460", - "Duvelisib", - "Anti-BCMA/Anti-CD3 Bispecific Antibody REGN5459", - "HDAC8 Inhibitor NBM-BMX", - "Methylprednisolone Sodium Succinate", - "PR1 Leukemia Peptide Vaccine", - "Vadacabtagene Leraleucel", - "Pegylated Recombinant Interleukin-2 THOR-707", - "Irosustat", - "Ifosfamide", - "Avadomide", - "Idecabtagene Vicleucel", - "Epratuzumab", - "" - ] - } - }, - "required": [ - "Model_id", - "Component", - "Model Site of Origin", - "Model Primary Diagnosis" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.NanoStringGeoMXROISegmentAnnotation.schema.json b/json_schemas/mc2.NanoStringGeoMXROISegmentAnnotation.schema.json deleted file mode 100644 index 5726cd57..00000000 --- a/json_schemas/mc2.NanoStringGeoMXROISegmentAnnotation.schema.json +++ /dev/null @@ -1,73 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NGS Stitched reads": {}, - "NGS Sequencing Coverage": {}, - "GeoMx Nuclei count": {}, - "NGS MapQ30": {}, - "NGS Deduplicated reads": {}, - "GeoMx Scan Width": {}, - "GeoMx Negative count mean": {}, - "GeoMx AOI Y Coordinate": {}, - "GeoMx Slide name": {}, - "GeoMx ROI Name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Trimmed reads": {}, - "GeoMx Scan name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "GeoMx No Template Control count": {}, - "NGS Aligned reads": {}, - "GeoMx Positive norm factor": {}, - "NGS Raw reads": {}, - "GeoMx Scan Offset X": {}, - "GeoMx Surface area": {}, - "Biospecimen Key": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "GeoMx Limit of Quantification": {}, - "GeoMx Scan Height": {}, - "GeoMx Tags": {}, - "GeoMx ROI Y Coordinate": {}, - "GeoMx Binding Density": {}, - "GeoMx AOI X Coordinate": {}, - "GeoMx AOI Name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "GeoMx QC status": {}, - "GeoMx Tissue Stain": {}, - "GeoMx ROI X Coordinate": {}, - "GeoMx Excluded Outlier Probes": {}, - "GeoMx Scan Offset Y": {}, - "NanoStringGeoMXROISegmentAnnotation_id": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "GeoMx ROI Name", - "GeoMx Scan name", - "Component", - "GeoMx AOI Name", - "NanoStringGeoMXROISegmentAnnotation_id" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.NanoStringGeoMxAuxiliaryFiles.schema.json b/json_schemas/mc2.NanoStringGeoMxAuxiliaryFiles.schema.json deleted file mode 100644 index eda69e3d..00000000 --- a/json_schemas/mc2.NanoStringGeoMxAuxiliaryFiles.schema.json +++ /dev/null @@ -1,28 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NanoStringGeoMxAuxiliaryFiles_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Synapse ID of GeoMx DSP Config File": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Synapse ID of GeoMx DSP ROI Segment Annotation File": {}, - "Synapse ID of GeoMx Lab Worksheet File": {}, - "Synapse ID of GeoMx DSP PKC File": {} - }, - "required": [ - "NanoStringGeoMxAuxiliaryFiles_id", - "Component" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.NanoStringGeoMxDSPImaging.schema.json b/json_schemas/mc2.NanoStringGeoMxDSPImaging.schema.json deleted file mode 100644 index 861d93a0..00000000 --- a/json_schemas/mc2.NanoStringGeoMxDSPImaging.schema.json +++ /dev/null @@ -1,37 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NanoStringGeoMxDSPLevel1 Key": {}, - "NanoStringGeoMxAuxiliaryFiles Key": {}, - "GeoMx Imaging AOI Coordinates": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NanoStringGeoMxDSPLevel2 Key": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NanoStringGeoMxDSPImaging_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NanoStringGeoMXROISegmentAnnotation Key": {}, - "GeoMx Imaging Channel Names": {} - }, - "required": [ - "Filename", - "Component", - "NanoStringGeoMxDSPImaging_id" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.NanoStringGeoMxDSPLevel1.schema.json b/json_schemas/mc2.NanoStringGeoMxDSPLevel1.schema.json deleted file mode 100644 index 06e8a660..00000000 --- a/json_schemas/mc2.NanoStringGeoMxDSPLevel1.schema.json +++ /dev/null @@ -1,161 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NGS Library Selection Method": { - "enum": [ - "MSLL", - "Padlock probes capture method", - "MBD2 protein methyl-CpG binding domain", - "HMPR", - "MNase", - "Oligo-dT", - "CF-M", - "unspecified", - "Reduced Representation", - "CF-T", - "cDNA_oligo_dT", - "RANDOM", - "cDNA_randomPriming", - "RT-PCR", - "Hybrid Selection", - "CF-S", - "ChIP", - "5-methylcytidine antibody", - "cDNA", - "MDA", - "RANDOM PCR", - "CF-H", - "Restriction Digest", - "RACE", - "DNAse", - "size fractionation", - "Inverse rRNA", - "other", - "CAGE", - "PCR", - "MF", - "PolyA", - "repeat fractionation", - "" - ] - }, - "NanoStringGeoMXROISegmentAnnotation Key": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "GeoMx DSP Assay Type": { - "enum": [ - "Protein NGS", - "RNA NGS", - "Protein nCounter", - "RNA nCounter", - "" - ] - }, - "NGS Target Sequencing Depth": {}, - "NGS Library Preparation Kit Name": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NanoStringGeoMxDSPLevel1_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Read Length": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Sequencing Platform": { - "enum": [ - "Illumina iSeq 100", - "Illumina HiSeq X Five", - "Illumina NextSeq", - "AB 3500 Genetic Analyzer", - "Illumina HiSeq X Ten", - "Illumina NextSeq 2500", - "DNBSEQ-T7", - "AB SOLiD PI System", - "AB 3130xL Genetic Analyzer", - "AB 3500xL Genetic Analyzer", - "AB SOLiD 4 System", - "Illumina HiSeq 3000", - "Illumina MiniSeq", - "Illumina MiSeq", - "Ion Torrent PGM", - "454 GS", - "Complete Genomics", - "Illumina NextSeq 500", - "Helicos HeliScope", - "MGISEQ-2000RS", - "Illumina HiSeq 2500", - "AB SOLiD System", - "AB SOLiD System 3.0", - "Ion Torrent S5 XL", - "Ion Torrent Proton", - "Oxford Nanopore MinION", - "AB 3730 Genetic Analyzer", - "DNBSEQ-G400", - "PacBio RS", - "Ion Torrent S5", - "454 GS FLX Titanium", - "Illumina Genome Analyzer IIx", - "PacBio RS II", - "Illumina HiSeq 1500", - "Illumina NextSeq 550", - "AB 5500xl Genetic Analyzer", - "Illumina NextSeq 2000", - "AB 5500 Genetic Analyzer", - "Illumina HiSeq 4000", - "Oxford Nanopore GridION", - "AB SOLiD 3 Plus System", - "454 GS FLX", - "454 GS FLX+", - "Illumina Genome Analyzer", - "Illumina Genome Analyzer II", - "Illumina HiScanSQ", - "Illumina HiSeq 2000", - "Ultima Genomics UG100", - "BGISEQ-500", - "454 GS 20", - "AB 310 Genetic Analyzer", - "Illumina HiSeq 1000", - "AB SOLiD 4hq System", - "Illumina NextSeq 1000", - "AB 3730xL Genetic Analyzer", - "AB 5500x-Wl Genetic Analyzer", - "AB 3130 Genetic Analyzer", - "454 GS Junior", - "DNBSEQ-G50", - "Illumina NovaSeq 6000", - "AB SOLiD System 2.0", - "PacBio Sequel II", - "Oxford Nanopore PromethION", - "Revio", - "PacBio Sequel" - ] - }, - "NGS Library Preparation Kit Version": {}, - "NanoStringGeoMxAuxiliaryFiles Key": {}, - "NGS Library Preparation Kit Vendor": {} - }, - "required": [ - "Filename", - "Component", - "NanoStringGeoMxDSPLevel1_id", - "NGS Read Length", - "NGS Sequencing Platform" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.NanoStringGeoMxDSPLevel2.schema.json b/json_schemas/mc2.NanoStringGeoMxDSPLevel2.schema.json deleted file mode 100644 index 2c95ffea..00000000 --- a/json_schemas/mc2.NanoStringGeoMxDSPLevel2.schema.json +++ /dev/null @@ -1,162 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Library Preparation Kit Name": {}, - "NGS Library Preparation Kit Version": {}, - "NanoStringGeoMxDSPLevel2_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Sequencing Platform": { - "enum": [ - "AB SOLiD 4hq System", - "Oxford Nanopore PromethION", - "Helicos HeliScope", - "Illumina HiSeq 1500", - "Illumina NovaSeq 6000", - "454 GS FLX Titanium", - "Illumina Genome Analyzer", - "454 GS Junior", - "Ion Torrent S5", - "Ion Torrent S5 XL", - "AB SOLiD PI System", - "AB 5500x-Wl Genetic 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probes capture method", - "other", - "cDNA_oligo_dT", - "" - ] - }, - "Genomic Reference": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NanoStringGeoMXROISegmentAnnotation Key": {}, - "NanoStringGeoMxAuxiliaryFiles Key": {}, - "GeoMx DSP Assay Type": { - "enum": [ - "Protein NGS", - "Protein nCounter", - "RNA NGS", - "RNA nCounter", - "" - ] - } - }, - "required": [ - "Component", - "NanoStringGeoMxDSPLevel2_id", - "NGS Sequencing Platform", - "Filename", - "Genomic Reference" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.NanoStringGeoMxDSPLevel3.schema.json b/json_schemas/mc2.NanoStringGeoMxDSPLevel3.schema.json deleted file mode 100644 index a5304c59..00000000 --- a/json_schemas/mc2.NanoStringGeoMxDSPLevel3.schema.json +++ /dev/null @@ -1,48 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NanoStringGeoMxDSPLevel2 Key": {}, - "NGS Matrix Type": { - "enum": [ - "Normalized Counts", - "Scaled Counts", - "Raw Counts", - "Batch Corrected Counts", - "" - ] - }, - "NGS Unique Target Count": {}, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NanoStringGeoMxDSPLevel1 Key": {}, - "Workflow Parameter Description": {}, - "Workflow Link": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Unique Probe Count": {}, - "NanoStringGeoMxDSPLevel3_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NanoStringGeoMxAuxiliaryFiles Key": {}, - "Workflow Type": {} - }, - "required": [ - "Component", - "Filename", - "NanoStringGeoMxDSPLevel3_id" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.PersonView.schema.json b/json_schemas/mc2.PersonView.schema.json deleted file mode 100644 index 8e110641..00000000 --- a/json_schemas/mc2.PersonView.schema.json +++ /dev/null @@ -1,113 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Person Tools": {}, - "Synapse Profile Id": {}, - "Alternative Names": {}, - "Portal Display": { - "enum": [ - "FALSE", - "TRUE" - ] - }, - "Email": {}, - "Chair Roles": { - "type": "array", - "items": { - "enum": [ - "Annual Meeting", - "Steering Committee", - "Working Group", - "None" - ] - }, - "maxItems": 4 - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Working Group Participation": { - "type": "array", - "items": { - "enum": [ - "Education and Outreach", - "None", - "Patient Advocacy Working Group", - "Image Analysis", - "Cancer Metabolism", - "Protein-Protein Interactions", - "Navigating Cancer with Science and Art", - "Cell and Tissue Mechanics", - "Resource and Data Sharing" - ] - }, - "maxItems": 9 - }, - "GrantView Key": {}, - "Person Consortium Name": { - "type": "array", - "items": { - "enum": [ - "HTAN", - "TEC", - "Sage Bionetworks", - "CSBC", - "CCBIR", - "ICBP", - "NCI Clinical and Translational Exploratory/Developmental Studies", - "NCI", - "PDMC", - "PS-ON", - "MetNet" - ] - }, - "maxItems": 11 - }, - "PersonView_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Person Publications": {}, - "Name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Url": {}, - "Person Datasets": {}, - "Person Educational Resources": {}, - "Consent For Portal Display": { - "enum": [ - "Yes", - "No" - ] - }, - "Orcid Id": {}, - "Last Known Institution": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Portal Display", - "Chair Roles", - "Component", - "Working Group Participation", - "Person Consortium Name", - "PersonView_id", - "Name", - "Consent For Portal Display", - "Last Known Institution" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.ProjectView.schema.json b/json_schemas/mc2.ProjectView.schema.json deleted file mode 100644 index f6ce0886..00000000 --- a/json_schemas/mc2.ProjectView.schema.json +++ /dev/null @@ -1,53 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "ProjectView_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Project Name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Project Description": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Project Type": { - "enum": [ - "project", - "Core" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Project Investigator": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "GrantView Key": {} - }, - "required": [ - "ProjectView_id", - "Project Name", - "Project Description", - "Project Type", - "Component", - "Project Investigator" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.PublicationView.schema.json b/json_schemas/mc2.PublicationView.schema.json deleted file mode 100644 index 401a758c..00000000 --- a/json_schemas/mc2.PublicationView.schema.json +++ /dev/null @@ -1,790 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/PublicationView_validation", - "title": "PublicationView_validation", - "type": "object", - "properties": { - "Publication Abstract": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Publication Title": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Publication Journal": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Study Key": {}, - "Publication Assay": { - "type": "array", - "items": { - "enum": [ - "Not Applicable", - "Comparative Genomic Hybridization", - "FISH", - "Cytometric Bead Array Assay", - "Scanning Angle Interference Microscopy", - "Binding Assay", - "In Vitro Selection", - "Bisulfite Sequencing", - "Immunoprecipitation", - "Picrosirius Staining", - "5C", - "Multiparametric Magnetic Resonance Imaging", - "Viral Transduction", - 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Assay", - "Size Exclusion Chromatography", - "TAB-Seq", - "Small-Angle X-ray Scattering", - "Ribo-Seq", - "Nuclear Magnetic Resonance", - "Cytochemical Stain", - "Invasion Assay", - "Fluorescence Correlation Spectroscopy", - "Point Accumulation for Imaging in Nanoscale Topography", - "Widefield Fluorescence Microscopy", - "Micropipette Adhesion Assay", - "Luminescent Cell Viability Assay", - "Hematoxylin and Eosin Staining Method", - "Murine Model", - "CellTiter-Glo Luminescent Cell Viability Assay", - "Single-Cell TCR Sequencing", - "scNT-Seq", - "Gene Silencing" - ] - }, - "maxItems": 379 - }, - "Pubmed Url": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Publication Accessibility": { - "enum": [ - "Open Access", - "Restricted Access" - ] - }, - "Publication Year": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Publication Doi": {}, - "Publication Authors": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Publication Tumor Type": { - "type": 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"Multiple Myeloma", - "Biliary Tract Carcinoma", - "Malignant Skin Neoplasm", - "Gastroesophageal Junction Adenocarcinoma", - "Gallbladder Carcinoma", - "Gastric Neoplasm", - "Combined Hepatocellular Carcinoma and Cholangiocarcinoma", - "Gastroesophageal Adenocarcinoma", - "Pancreatic Ductal Adenocarcinoma", - "Triple-Negative Breast Carcinoma", - "Neuroepithelial Neoplasm", - "Plasmablastic Lymphoma", - "Brain Neoplasm", - "Neurofibroma", - "Central Nervous System Cavernous Hemangioma", - "Marginal Zone Lymphoma", - "Cutaneous Melanoma", - "Colon Adenocarcinoma", - "Invasive Ductal Breast Carcinoma", - "Pancreatic Neoplasm", - "Neuroblastoma", - "Synovial Sarcoma", - "Hodgkin Lymphoma", - "Pancreatic Neuroendocrine Carcinoma", - "Non-Hodgkin Lymphoma", - "Colorectal Carcinoma", - "Pilocytic Astrocytoma", - "Precursor B-cell lymphoblastic leukemia", - "Breast Neoplasm", - "Lung Small Cell Carcinoma", - "Head and Neck Carcinoma", - "Glioblastoma", - "Extraventricular Neurocytoma", - "Acute Lymphoblastic Leukemia", - "Histiocytic Sarcoma", - "Malignant Pancreatic Neoplasm", - "Fibroepithelial Polyp", - "Esophageal Adenocarcinoma", - "Malignant Peritoneal Neoplasm", - "Rectal Adenocarcinoma", - "Soft Tissue Sarcoma", - "Kaposi Sarcoma", - "Malignant Peripheral Nerve Sheath Tumor", - "Serous Tubal Intraepithelial Carcinoma", - "Colorectal Neoplasm", - "Basal Cell Neoplasm", - "Penile Carcinoma", - "Plexiform Schwannoma", - "Glioma", - "Meningioma", - "Osteosarcoma", - "Ovarian Neoplasm", - "Oral Cavity Neoplasm", - "Craniopharyngioma", - "Myoepithelioma", - "Luminal A Breast Carcinoma", - "Ovarian Adenosarcoma", - "Acinar Cell Carcinoma", - "Bone Neoplasm", - "Pituitary Gland Adenoma", - "Plexiform Neurofibroma", - "Malignant Digestive System Neoplasm", - "Testicular Embryonal Carcinoma", - "Liver and Intrahepatic Bile Duct Carcinoma", - "Hepatocellular Carcinoma", - "Primary Central Nervous System Lymphoma", - "Esophageal Squamous Cell Carcinoma", - "Lymphoid Leukemia", - "Melanoma", - "Rhabdomyosarcoma", - "Astrocytoma", - "T Acute Lymphoblastic Leukemia", - "Fibrosarcoma", - "Cervical Carcinoma", - "Colorectal Adenocarcinoma", - "Ovarian Serous Adenocarcinoma", - "Schwannoma", - "Skin Neoplasm", - "Cellular Schwannoma", - "Dysembryoplastic Neuroepithelial Neoplasm", - "Rosette-Forming Glioneuronal Tumor", - "Gastric Carcinoma", - "Intrahepatic Cholangiocarcinoma", - "Lung Squamous Cell Carcinoma", - "Mantle Cell Lymphoma", - "Colorectal Adenoma", - "Endometrial Neoplasm", - "Non-Functioning Pituitary Gland Adenoma", - "Myeloproliferative Neoplasm", - "Ependymoma", - "Central Nervous System Neoplasm", - "Colon Carcinoma", - "Low Grade Glioma", - "Barrett Esophagus", - "Primary Myelofibrosis", - "Ductal Breast Carcinoma In Situ", - "Cutaneous T Cell Lymphoma", - "Pending Annotation", - "Neuroendocrine Neoplasm", - "Carcinoma In Situ", - "Cholangiocarcinoma", - "Sinonasal Squamous Cell Carcinoma", - "Acute Monocytic Leukemia", - "Lung Carcinoma", - "Mycosis Fungoides", - "Follicular Lymphoma", - "Breast Adenocarcinoma", - "Diffuse Large B-Cell Lymphoma", - "Head and Neck Neoplasm", - "Lung Neoplasm", - "Carcinoma", - "Chronic Myeloid Leukemia", - "Gastric Adenocarcinoma", - "Medulloblastoma", - "Prostate Adenocarcinoma", - "Sarcoma", - "Malignant Genitourinary System Neoplasm", - "Skin Carcinoma", - "Prostate Neoplasm", - "Prostate Carcinoma", - "Thyroid Gland Carcinoma", - "Acute Myeloid Leukemia", - "Thyroid Gland Anaplastic Carcinoma", - "Chronic Lymphocytic Leukemia", - "Malignant Neoplasm", - "Castration-Resistant Prostate Carcinoma", - "Giant Cell Tumor", - "Plasmacytoma", - "Oropharyngeal Neoplasm", - "Endometrial Carcinoma", - "Pancreatic Carcinoma", - "Angiosarcoma", - "Retinoblastoma", - "Urothelial Carcinoma", - "Not-Applicable", - "Ovarian Carcinoma", - "Uterine Adenosarcoma", - "Pancreatic Adenocarcinoma", - "Teratoma", - "Clear Cell Renal Cell Carcinoma", - "Myeloid Neoplasm", - "Squamous Cell Carcinoma", - "Gastrointestinal Stromal Neoplasm", - "Atypical Teratoid/Rhabdoid Tumor", - "Malignant Brain Neoplasm", - "B Acute Lymphoblastic Leukemia", - "Lung Non-Small Cell Carcinoma", - "Leiomyoma", - "Adenocarcinoma", - "Mesothelioma", - "Vascular Neoplasm", - "Head and Neck Squamous Cell Carcinoma" - ] - }, - "maxItems": 186 - }, - "Publication Keywords": {}, - "PublicationView_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Publication Tissue": { - "type": "array", - "items": { - "enum": [ - "Not Applicable", - "Lymph Node", - "Fallopian Tube", - "Duodenum", - "Rectum", - "Synovial Membrane", - "Esophagus", - "Spleen", - "Olfactory Mucosa", - "Oral Cavity", - "Ligament", - "Reproductive System", - "Lymph", - "Breast", - "Pharynx", - "Pleura", - "Intrathoracic Lymph Nodes", - "Abdominal Esophagus", - "Adrenal Gland", - "Prostate Gland", - "Spinal Cord", - "Epithelium", - "Cornea", - "Heart", - "Mesenchyme", - "unspecified", - "Endocervix", - "Colon", - "Sclera", - "Vagina", - "Caecum", - "Main Bronchus", - "Adipose Tissue", - "Vertebra", - "Bone Marrow", - "Endometrium", - "Mucosa", - "Testis", - "Placenta", - "Thymus", - "Endothelium", - "Lymph Nodes of Inguinal Region or Leg", - "Kidney", - "Peripheral Blood Mononuclear Cell", - "Stomach", - "Skin", - "Trachea", - "Sinonasal Tract", - "Eye", - "Connective and Soft Tissue", - "Bile Duct", - "Respiratory System", - "Ovary", - "Tonsil", - "Liver", - "Vein", - "Gastrointestinal Tract", - "Gastroesophageal Junction", - "Omentum", - "Periodontal Ligament", - "Hair Follicle", - "Tendon", - "Meninges", - "Blood Vessel", - "Choroid", - "Joint", - "Intra-Abdominal Lymph Nodes", - "Peripheral Nerves", - "Salivary Gland", - "Lymph Nodes of Axilla or Arm", - "Oral Mucosa", - "Ear", - "Bone", - "Tongue", - "Head and Neck", - "Vascular Endothelium", - "Lymphoid Tissue", - "Hematopoietic System", - "Aorta", - "Artery", - "Cancer-Associated Fibroblast", - "Gonad", - "Ascending Colon", - "Pending Annotation", - "Heart Muscle", - "Bladder", - "Pituitary Gland", - "Hippocampus", - "Blood", - "Muscle", - "Embryonic Heart", - "Thyroid Gland", - "Pancreas", - "Pelvic Lymph Nodes", - "Small Intestine", - "Cardia", - "Uterus", - "Foreskin", - "Nervous System", - "Alveolus", - "Embryo", - "Lung", - "Peritoneum", - "Cartilage", - "Brain", - "Genitourinary", - "Frontal Lobe", - "Nasal Cavity", - "Lymphatic System", - "Mammary Gland", - "Umbilical Cord", - "Larynx", - "Cervix Uteri", - "Intestine" - ] - }, - "maxItems": 114 - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "GrantView Key": {}, - "Pubmed Id": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Publication Abstract", - "Publication Title", - "Publication Journal", - "Publication Assay", - "Pubmed Url", - "Publication Accessibility", - "Publication Year", - "Publication Authors", - "Publication Tumor Type", - "PublicationView_id", - "Publication Tissue", - "Component", - "Pubmed Id" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.SequencingLevel1.schema.json b/json_schemas/mc2.SequencingLevel1.schema.json deleted file mode 100644 index ff7e4ca8..00000000 --- a/json_schemas/mc2.SequencingLevel1.schema.json +++ /dev/null @@ -1,228 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NGS Library Strategy": { - "enum": [ - "MRE-Seq", - "RIP-Seq", - "Synthetic-Long-Read", - "FINISHING", - "Targeted-Capture", - "CLONEEND", - "Hi-C", - "Bisulfite-Seq", - "WGS", - "POOLCLONE", - "DNase-Hypersensitivity", - "MeDIP-Seq", - "WGA", - "MNase-Seq", - "Tethered Chromatin Conformation Capture", - "OTHER", - "ChIA-PET", - "miRNA-Seq", - "RNA-Seq", - "RAD-Seq", - "FAIRE-seq", - "AMPLICON", - "WCS", - "Tn-Seq", - "ChIP-Seq", - "SELEX", - "ATAC-seq", - "CTS", - "ncRNA-Seq", - "CLONE", - "WXS", - "ssRNA-seq", - "MBD-Seq", - "EST", - "FL-cDNA" - ] - }, - "NGS Library Preparation Kit Version": {}, - "NGS Sequencing Design Description": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Library Selection Method": { - "enum": [ - "Inverse rRNA", - "MNase", - "HMPR", - "Padlock probes capture method", - "CF-H", - "PolyA", - "DNAse", - "size fractionation", - "CF-T", - "CAGE", - "MSLL", - "PCR", - "cDNA_randomPriming", - "cDNA", - "Reduced Representation", - "CF-M", - "MF", - "RT-PCR", - "RACE", - "RANDOM PCR", - "unspecified", - "cDNA_oligo_dT", - "CF-S", - "RANDOM", - "5-methylcytidine antibody", - "MDA", - "other", - "repeat fractionation", - "ChIP", - "MBD2 protein methyl-CpG binding domain", - "Restriction Digest", - "Oligo-dT", - "Hybrid Selection", - "" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Sequencing Platform": { - "enum": [ - "Ion Torrent S5", - "AB 3500xL Genetic Analyzer", - "Illumina NextSeq 2000", - "Ion Torrent Proton", - "AB SOLiD PI System", - "Ion Torrent PGM", - "Illumina HiSeq X Ten", - "AB 3730xL Genetic Analyzer", - "Illumina HiSeq 4000", - "Illumina NextSeq 1000", - "AB 5500x-Wl Genetic Analyzer", - "MGISEQ-2000RS", - "PacBio RS", - "454 GS Junior", - "Illumina HiSeq 1500", - "Illumina NextSeq 500", - "454 GS FLX", - "Ultima Genomics UG100", - "PacBio RS II", - "BGISEQ-500", - "DNBSEQ-T7", - "Illumina NextSeq 550", - "Illumina HiScanSQ", - "PacBio Sequel II", - "454 GS", - "AB 5500xl Genetic Analyzer", - "AB SOLiD 3 Plus System", - "AB 3730 Genetic Analyzer", - "AB SOLiD System 3.0", - "Illumina HiSeq X Five", - "Illumina iSeq 100", - "DNBSEQ-G50", - "Illumina HiSeq 2500", - "Illumina HiSeq 2000", - "Illumina Genome Analyzer", - "AB SOLiD 4 System", - "Oxford Nanopore PromethION", - "AB 5500 Genetic Analyzer", - "Ion Torrent S5 XL", - "Illumina Genome Analyzer IIx", - "Oxford Nanopore GridION", - "AB 310 Genetic Analyzer", - "AB 3500 Genetic Analyzer", - "Illumina Genome Analyzer II", - "AB SOLiD 4hq System", - "454 GS FLX Titanium", - "Illumina NextSeq", - "Illumina NovaSeq 6000", - "Oxford Nanopore MinION", - "Revio", - "454 GS FLX+", - "Illumina MiniSeq", - "PacBio Sequel", - "DNBSEQ-G400", - "AB 3130 Genetic Analyzer", - "AB SOLiD System 2.0", - "AB SOLiD System", - "Complete Genomics", - "Helicos HeliScope", - "Illumina MiSeq", - "454 GS 20", - "Illumina HiSeq 1000", - "Illumina HiSeq 3000", - "Illumina NextSeq 2500", - "AB 3130xL Genetic Analyzer" - ] - }, - "NGS Library Preparation Days from Index": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Library Preparation Kit Vendor": {}, - "NGS Library Source": { - "enum": [ - "SYNTHETIC", - "TRANSCRIPTOMIC SINGLE CELL", - "VIRAL RNA", - "GENOMIC", - "TRANSCRIPTOMIC", - "METATRANSCRIPTOMIC", - "GENOMIC SINGLE CELL", - "OTHER", - "METAGENOMIC" - ] - }, - "NGS Sequencing Library Construction Days from Index": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Library Layout": { - "enum": [ - "Paired-end", - "Single-end" - ] - }, - "NGS Library Preparation Kit Name": {}, - "NGS Read Indicator": { - "enum": [ - "R1&R2", - "other", - "R1", - "R2", - "I1" - ] - }, - "SequencingLevel1_id": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "NGS Library Strategy", - "NGS Sequencing Design Description", - "Component", - "NGS Sequencing Platform", - "Filename", - "NGS Library Source", - "NGS Sequencing Library Construction Days from Index", - "NGS Library Layout", - "NGS Read Indicator", - "SequencingLevel1_id" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.SequencingLevel2.schema.json b/json_schemas/mc2.SequencingLevel2.schema.json deleted file mode 100644 index 42caa51e..00000000 --- a/json_schemas/mc2.SequencingLevel2.schema.json +++ /dev/null @@ -1,231 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "NGS Sequencing Platform": { - "enum": [ - "Illumina HiSeq 3000", - "Helicos HeliScope", - "454 GS FLX", - "AB 3500xL Genetic Analyzer", - "AB SOLiD System 2.0", - "Illumina MiSeq", - "BGISEQ-500", - "AB 5500x-Wl Genetic Analyzer", - "AB SOLiD 3 Plus System", - "PacBio RS", - "454 GS FLX Titanium", - "AB SOLiD 4 System", - "AB SOLiD System 3.0", - "Illumina HiScanSQ", - "Illumina MiniSeq", - "AB 3130 Genetic Analyzer", - "DNBSEQ-T7", - "Illumina HiSeq X Ten", - "Illumina NextSeq 1000", - "Oxford Nanopore GridION", - "Illumina NextSeq", - "Illumina NextSeq 550", - "PacBio RS II", - "AB 5500xl Genetic Analyzer", - "AB 310 Genetic Analyzer", - "Revio", - "AB 5500 Genetic Analyzer", - "Ultima Genomics UG100", - "Ion Torrent S5 XL", - "MGISEQ-2000RS", - "Illumina Genome Analyzer IIx", - "Illumina HiSeq 1000", - "PacBio Sequel", - "Ion Torrent Proton", - "AB 3730 Genetic Analyzer", - "454 GS Junior", - "Illumina HiSeq 1500", - "AB 3730xL Genetic Analyzer", - "Complete Genomics", - "Illumina HiSeq X Five", - "Illumina NovaSeq 6000", - "AB 3500 Genetic Analyzer", - "Illumina HiSeq 2500", - "Ion Torrent S5", - "AB SOLiD 4hq System", - "Oxford Nanopore MinION", - "454 GS 20", - "AB SOLiD System", - "Illumina Genome Analyzer", - "DNBSEQ-G400", - "Illumina HiSeq 4000", - "Oxford Nanopore PromethION", - "DNBSEQ-G50", - "Illumina Genome Analyzer II", - "Illumina NextSeq 500", - "AB SOLiD PI System", - "Illumina NextSeq 2000", - "Ion Torrent PGM", - "454 GS FLX+", - "454 GS", - "Illumina HiSeq 2000", - "AB 3130xL Genetic Analyzer", - "Illumina NextSeq 2500", - "PacBio Sequel II", - "Illumina iSeq 100" - ] - }, - "NGS Library Source": { - "enum": [ - "GENOMIC SINGLE CELL", - "VIRAL RNA", - "TRANSCRIPTOMIC", - "GENOMIC", - "METAGENOMIC", - "METATRANSCRIPTOMIC", - "SYNTHETIC", - "TRANSCRIPTOMIC SINGLE CELL", - "OTHER" - ] - }, - "NGS Deduplicated reads": {}, - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Read Length": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Library Strategy": { - "enum": [ - "CLONE", - "RAD-Seq", - "DNase-Hypersensitivity", - "MRE-Seq", - "CLONEEND", - "RIP-Seq", - "WCS", - "ATAC-seq", - "OTHER", - "Tn-Seq", - "EST", - "ChIP-Seq", - "AMPLICON", - "ssRNA-seq", - "CTS", - "Bisulfite-Seq", - "Targeted-Capture", - "SELEX", - "WGS", - "miRNA-Seq", - "ncRNA-Seq", - "Synthetic-Long-Read", - "MNase-Seq", - "ChIA-PET", - "WXS", - "MBD-Seq", - "Tethered Chromatin Conformation Capture", - "WGA", - "POOLCLONE", - "Hi-C", - "FINISHING", - "FL-cDNA", - "MeDIP-Seq", - "FAIRE-seq", - "RNA-Seq" - ] - }, - "NGS Sequencing Coverage": {}, - "NGS Stitched reads": {}, - "NGS Raw reads": {}, - "NGS Sequencing Design Description": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Library Selection Method": { - "enum": [ - "Reduced Representation", - "cDNA", - "MSLL", - "RANDOM", - "RANDOM PCR", - "DNAse", - "5-methylcytidine antibody", - "MNase", - "Oligo-dT", - "Restriction Digest", - "Padlock probes capture method", - "other", - "CF-M", - "MF", - "Inverse rRNA", - "PolyA", - "unspecified", - "CF-H", - "cDNA_randomPriming", - "MDA", - "size fractionation", - "MBD2 protein methyl-CpG binding domain", - "HMPR", - "RT-PCR", - "CF-S", - "cDNA_oligo_dT", - "RACE", - "PCR", - "ChIP", - "repeat fractionation", - "Hybrid Selection", - "CAGE", - "CF-T", - "" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "SequencingLevel1 Key": {}, - "SequencingLevel2_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Software and Version": {}, - "NGS Library Layout": { - "enum": [ - "Single-end", - "Paired-end" - ] - }, - "NGS Unique Bases": {}, - "NGS Aligned reads": {}, - "NGS Trimmed reads": {}, - "Genomic Reference": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS MapQ30": {} - }, - "required": [ - "NGS Sequencing Platform", - "NGS Library Source", - "Filename", - "NGS Read Length", - "NGS Library Strategy", - "NGS Sequencing Design Description", - "Component", - "SequencingLevel2_id", - "NGS Library Layout", - "Genomic Reference" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.SequencingLevel3.schema.json b/json_schemas/mc2.SequencingLevel3.schema.json deleted file mode 100644 index 303a847b..00000000 --- a/json_schemas/mc2.SequencingLevel3.schema.json +++ /dev/null @@ -1,44 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Filename": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Matrix Type": { - "enum": [ - "Scaled Counts", - "Normalized Counts", - "Batch Corrected Counts", - "Raw Counts", - "" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "NGS Unique Target Count": {}, - "SequencingLevel2 Key": {}, - "NGS Unique Probe Count": {}, - "SequencingLevel3_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Software and Version": {} - }, - "required": [ - "Filename", - "Component", - "SequencingLevel3_id" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.Study.schema.json b/json_schemas/mc2.Study.schema.json deleted file mode 100644 index 61d2b37b..00000000 --- a/json_schemas/mc2.Study.schema.json +++ /dev/null @@ -1,110 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Study Reuse Statement": {}, - "Study De-identification Method Software": {}, - "Study Name": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Study Investigator": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "PersonView Key": {}, - "Study De-identification Method Type": { - "enum": [ - "Semiautomatic", - "Automatic", - "Not applicable", - "Manual" - ] - }, - "Component": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Study dbGaP Accession Id": {}, - "GrantView Key": {}, - "Study_id": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Study Data Use Codes": { - "type": "array", - "items": { - "enum": [ - "RS", - "NPU", - "PS", - "GSO", - "HMB", - "NPUNCU", - "DS", - "TS", - "CC", - "POA", - "US", - "IRB", - "MOR", - "DUM", - "GRU", - "IS", - "RTN", - "NMDS", - "PUB", - "NCU", - "GS", - "NPOA", - "COL", - "NRES", - "" - ] - }, - "maxItems": 24 - }, - "Study Description": { - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Study License": { - "enum": [ - "CC BY-NC 3.0", - "CC BY 4.0", - "CC BY 3.0", - "CC BY-NC 4.0", - "" - ] - }, - "ProjectView Key": {}, - "Study De-identification Method Description": {}, - "Study Number of Participants": { - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Study Name", - "Study Investigator", - "Study De-identification Method Type", - "Component", - "Study_id", - "Study Description", - "Study Number of Participants" - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.ToolView.schema.json b/json_schemas/mc2.ToolView.schema.json deleted file mode 100644 index a6d79dfb..00000000 --- a/json_schemas/mc2.ToolView.schema.json +++ /dev/null @@ -1,1467 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/MC2", - "title": "MC2", - "type": "object", - "properties": { - "Tool Link Type": { - "type": "array", - "items": { - "enum": [ - "Mailing list", - "Helpdesk", - "Issue Tracker", - "Mirror", - "Software Catalogue", - "Service", - "Technical Monitoring", - "Social Media", - "other", - "Discussion Forum", - "Repository", - "Galaxy Service", - "" - ] - }, - "maxItems": 12 - }, - "Tool Input Format": { - "type": "array", - "items": { - "enum": [ - "CSV", - "SAM", - "FASTA", - "Scores Format", - "Antimony", - "GCT/Res Format", - "GTF", - "Alignment Format", - "DSV", - "mzML", - "Dot-Bracket Format", - "MAF", - "VCF", - "PS", - "FASTQ-Illumina", - "SQLite Format", - "MATLAB Script", - "Tertiary Structure Format", - "Gene Expression Report Format", - "Python Script", - "Nexus Format", - "Phylogenetic Tree Format", - "Graph Format", - "Sequence Profile Format", - "bigWig", - "Raw Sequence Format", - "BED", - "BCF", - "Phylip Format", - "H5AD", - "Annotated Text Format", - "Database Hits (Sequence) Format", - "imzML Metadata File", - "NIFTI Format", - "Sequence Cluster Format (Protein)", - "BLAST Results", - "Sequence Cluster Format", - "Textual Format", - "Alignment Format (Pair Only)", - "RPKM", - "xls", - "xlsx", - "SBML", - "Sequence Variation Annotation Format", - "Gene Annotation Format", - "R Script", - "DCD", - "MAGE-ML", - "JSON", - "Sequence Range Format", - "GML", - "Ontology Format", - "GFF3", - "bedgraph", - "Chemical Data Format", - "OME-TIFF", - "FASTQ", - "Individual Genetic Data Format", - "Sequence Record Format", - "BNGL", - "Cytoband Format", - "HTML", - "NumPy Format", - "Cytoscape Input File Format", - "nii", - "Sequence Annotation Track Format", - "SVG", - "Workflow Format", - "Mass Spectrometry Data 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}, - "required": [ - "Tool Input Format", - "Tool Output Format", - "Component", - "Tool Release Date", - "ToolView_id", - "Tool Entity Type", - "Tool Description", - "Tool Operation", - "Tool Output Data", - "Tool Input Data", - "Tool Entity Role", - "Tool Name", - "Tool Package Dependencies Present", - "Tool Homepage" - ] -} \ No newline at end of file diff --git a/templates/10xVisiumAuxiliaryFiles.csv b/templates/10xVisiumAuxiliaryFiles.csv deleted file mode 100644 index 99323d00..00000000 --- a/templates/10xVisiumAuxiliaryFiles.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Filename,10xVisiumAuxiliaryFiles_id,10xVisiumRNALevel1 Key,10xVisiumRNALevel2 Key,10xVisiumRNALevel3 Key,10xVisiumRNALevel4 Key,Visium Run ID,Visium File Type,Visium Slide ID,Capture Area,Workflow Version,Workflow Link -10xVisiumAuxiliaryFiles,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumRNALevel1.csv b/templates/10xVisiumRNALevel1.csv deleted file mode 100644 index 88d564d8..00000000 --- a/templates/10xVisiumRNALevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel1_id,Filename,Visium Run ID,NGS Read Indicator,Visium Spatial Read1,Visium Spatial Read2,Visium Spatial Library Construction Method,NGS Library Preparation Days from Index,NGS Sequencing Library Construction Days from Index,NGS RNA End Bias,NGS RNA Reverse Transcription Primer,NGS Sequencing Platform,Visium Capture Area,Protocol Link,Visium Slide Version,Visium Slide ID,Visium Image Re-orientation,Visium Permeabilization Time,NGS RNA RIN,NGS RNA DV200 -10xVisiumRNALevel1,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumRNALevel2.csv b/templates/10xVisiumRNALevel2.csv deleted file mode 100644 index 72459f5b..00000000 --- a/templates/10xVisiumRNALevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel2_id,Filename,File Format,Checksum,10xVisiumRNALevel1 Key,File Alias,Visium UMI Tag,Visium Whitelist Spatial Barcode File Link,Visium Spatial Barcode Tag,Visium Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Visium Run ID,Visium Capture Area -10xVisiumRNALevel2,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumRNALevel3.csv b/templates/10xVisiumRNALevel3.csv deleted file mode 100644 index 5aeca78a..00000000 --- a/templates/10xVisiumRNALevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel3_id,Filename,10xVisiumRNALevel2 Key,10xVisiumAuxiliaryFiles Key,Visium Run ID,Visium File Type,Workflow Version,Workflow Link,Visium Capture Area,Visium Spots under tissue,Visium Mean Reads per Spatial Spot,Visium Median Number Genes per Spatial Spot,NGS Sequencing Coverage,Visium Proportion Reads Mapped,Visium Proportion Reads Mapped to Transcriptome,Visium Median UMI Counts per Spot -10xVisiumRNALevel3,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumRNALevel4.csv b/templates/10xVisiumRNALevel4.csv deleted file mode 100644 index 519ef96c..00000000 --- a/templates/10xVisiumRNALevel4.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,10xVisiumRNALevel4_id,Filename,File Format,Biospecimen Key,10xVisiumRNALevel3 Key,Run ID,Workflow Version,Workflow Link,Visium Workflow Type,Visium Workflow Parameters Description -10xVisiumRNALevel4,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv b/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv deleted file mode 100644 index 160d867b..00000000 --- a/templates/10xVisiumSpatialTranscriptomics-AuxiliaryFiles.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Filename,File Format,Biospecimen Key,VisiumAux_id,VisiumRNALevel1 Key,VisiumRNALevel2 Key,VisiumRNALevel3 Key,VisiumRNALevel4 Key,Run ID,Visium File Type,Slide ID,Capture Area,Workflow Version,Workflow Link -10xVisiumSpatialTranscriptomics-AuxiliaryFiles,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv b/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv deleted file mode 100644 index b54832cc..00000000 --- a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel1_id,Filename,Run ID,File Format,Biospecimen Key,File Alias,Read Indicator,Spatial Read1,Spatial Read2,Spatial Library Construction Method,Library Preparation Days from Index,Sequencing Library Construction Days from Index,End Bias,Reverse Transcription Primer,Sequencing Platform,Capture Area,Protocol Link,Slide Version,Slide ID,Image Re-orientation,Permeabilization Time,RIN,DV200 -10xVisiumSpatialTranscriptomics-RNA-seqLevel1,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv b/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv deleted file mode 100644 index 2a7015c4..00000000 --- a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel2_id,Filename,File Format,Checksum,VisiumRNALevel1 Key,File Alias,UMI Tag,Whitelist Spatial Barcode File Link,Spatial Barcode Tag,Applied Hard Trimming,Workflow Version,Workflow Link,Genomic Reference,Genomic Reference URL,Genome Annotation URL,Biospecimen Key,Run ID,Capture Area -10xVisiumSpatialTranscriptomics-RNA-seqLevel2,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv b/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv deleted file mode 100644 index d6fb50b2..00000000 --- a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel3_id,Filename,File Format,Biospecimen Key,VisiumRNALevel2 Key,VisiumAux Key,File Alias,Run ID,Visium File Type,Workflow Version,Workflow Link,Capture Area,Spots under tissue,Mean Reads per Spatial Spot,Median Number Genes per Spatial Spot,Sequencing Saturation,Proportion Reads Mapped,Proportion Reads Mapped to Transcriptome,Median UMI Counts per Spot -10xVisiumSpatialTranscriptomics-RNA-seqLevel3,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv b/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv deleted file mode 100644 index b33a5a1e..00000000 --- a/templates/10xVisiumSpatialTranscriptomics-RNA-seqLevel4.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,VisiumRNALevel4_id,Filename,File Format,Biospecimen Key,VisiumRNALevel3 Key,Run ID,Workflow Version,Workflow Link,Visium Workflow Type,Visium Workflow Parameters Description -10xVisiumSpatialTranscriptomics-RNA-seqLevel4,,,,,,,,,, \ No newline at end of file diff --git a/templates/Biospecimen.csv b/templates/Biospecimen.csv deleted file mode 100644 index fb54a2c9..00000000 --- a/templates/Biospecimen.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Biospecimen_id,Study Key,Individual Key,Model Key,Parent Biospecimen Key,Biospecimen Type,Biospecimen Acquisition Method,Biospecimen Stain,Biospecimen Species,Biospecimen Sex,Biospecimen Age at Collection,Biospecimen Age at Collection Unit,Biospecimen Disease Type,Biospecimen Primary Site,Biospecimen Primary Diagnosis,Biospecimen Site of Origin,Biospecimen Tumor Subtype,Biospecimen Tumor Grade,Biospecimen Known Metastasis Sites,Biospecimen Tumor Morphology,Biospecimen Pathology,Biospecimen Composition,Biospecimen Preservation Method,Biospecimen Fixative,Biospecimen Embedding Medium,Biospecimen Anatomic Site,Biospecimen Site of Resection or Biopsy,Biospecimen Timepoint Type,Biospecimen Timepoint Offset,Biospecimen Collection Site,Biospecimen Therapeutic Agent,Biospecimen Last Known Disease Status,Biospecimen BioSample Identifier,Biospecimen Description -Biospecimen,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/DataDSP.csv b/templates/DataDSP.csv deleted file mode 100644 index cdd72926..00000000 --- a/templates/DataDSP.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,DataDSP_id,Study Key,DatasetView Key,DSP Dataset Alias,DSP Dataset Name,DSP Dataset Url,DSP Dataset Assay,DSP Dataset Level,DSP Dataset Species,DSP Dataset Tumor Type,DSP Dataset Tissue,DSP Dataset File Formats,DSP Number of Files,DSP Number of Samples,DSP Number of Participants,DSP Storage Size,DSP Dataset Description,DSP Planned Upload Date,DSP Planned Release Date,DSP Data Use Codes,DSP IRB Form,DSP Dataset Destination -DataDSP,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/DatasetView.csv b/templates/DatasetView.csv deleted file mode 100644 index fe709ad5..00000000 --- a/templates/DatasetView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,DatasetView_id,Study Key,PublicationView Key,Dataset Name,Dataset Alias,Dataset Description,Dataset Design,Dataset Assay,Dataset Species,Dataset Tumor Type,Dataset Tissue,Dataset Url,Dataset File Formats,Data Use Codes -DatasetView,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/EducationalResource.csv b/templates/EducationalResource.csv deleted file mode 100644 index 73b11839..00000000 --- a/templates/EducationalResource.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,EducationalResource_id,Resource Title,Resource Link,Resource Topic,Resource Activity Type,Resource Primary Format,Resource Intended Use,Resource Primary Audience,Resource Educational Level,Resource Description,Resource Origin Institution,Resource Language,Resource Contributors,Resource Grant Number,Resource Secondary Topic,Resource License,Resource Use Requirements,Resource Alias,Resource Internal Identifier,Resource Media Accessibility,Resource Access Hazard,Resource Dataset Alias,Resource Tool Link -EducationalResource,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/FileView.csv b/templates/FileView.csv deleted file mode 100644 index 92ac2521..00000000 --- a/templates/FileView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,FileView_id,Biospecimen Key,Study Key,DatasetView Key,Filename,File Alias,File Description,File Design,File Level,File Assay,File Species,File Tumor Type,File Tissue,File Url,File Format,Data Use Codes,File Longitudinal Group,File Longitudinal Event Type,File Longitudinal Sequence Identifier,File Longitudinal Time Elapsed Unit,File Longitudinal Sequential Time Elapsed,File Longitudinal Total Time Elapsed -FileView,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/GrantView.csv b/templates/GrantView.csv deleted file mode 100644 index d19386e1..00000000 --- a/templates/GrantView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,GrantView_id,Grant Name,Grant Number,Grant Abstract,Grant Type,Grant Theme Name,Grant Institution Name,Grant Institution Alias,Grant Investigator,Grant Consortium Name,Grant Start Date,NIH RePORTER Link,Duration of Funding,Embargo End Date,Grant Synapse Team,Grant Synapse Project -GrantView,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/ImagingChannel.csv b/templates/ImagingChannel.csv deleted file mode 100644 index 67573f9c..00000000 --- a/templates/ImagingChannel.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingChannel_id,Study Key,Channel Identifier,Channel Name,Channel Passed QC,Channel Cycle Number,Channel Sub-cycle Number,Channel Antibody Role,Channel Target Name,Channel Antibody Name,Channel Resource ID,Channel Fluorophore,Channel Antibody Clone,Channel Antibody Lot,Channel Antibody Vendor,Channel Antibody Catalog Number,Channel Excitation Wavelength,Channel Emission Wavelength,Channel Excitation Bandwidth,Channel Emission Bandwidth,Channel Metal Symbol,Channel Metal Isotope,Channel Oligo Barcode Upper Strand,Channel Oligo Barcode Lower Strand,Channel Probe Dilution Ratio,Channel Probe Concentration -ImagingChannel,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/ImagingLevel1.csv b/templates/ImagingLevel1.csv deleted file mode 100644 index 944966f8..00000000 --- a/templates/ImagingLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel1_id,Filename,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,ImagingChannel Key -ImagingLevel1,,,,,,,, \ No newline at end of file diff --git a/templates/ImagingLevel2.csv b/templates/ImagingLevel2.csv deleted file mode 100644 index 8f20521c..00000000 --- a/templates/ImagingLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel2_id,Filename,ImagingLevel1 Key,ImagingChannel Key,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,Image Objective,Image Nominal Magnification,Image Lense Aperture,Image Working Distance,Image Working Distance Unit,Image Immersion Type,Image Pyramidal,Image Z stack,Image Timeseries,Image FOV Index,Image FOV Size X,Image FOV Size X Unit,Image FOV Size Y,Image FOV Size Y Unit,Image Frame Averaging,Image Identifier,Image Dimension Order,Image Physical Size X,Image Physical Size X Unit,Image Physical Size Y,Image Physical Size Y Unit,Image Physical Size Z,Image Physical Size Z Unit,Image Pixels BigEndian,Image Plane Count,Image Channel Size,Image Number of Timepoints,Image X Pixels,Image Y Pixels,Image Z Pixels,Image Pixel Type -ImagingLevel2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/ImagingLevel3Image.csv b/templates/ImagingLevel3Image.csv deleted file mode 100644 index c7452c5d..00000000 --- a/templates/ImagingLevel3Image.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel3Image_id,Filename,ImagingChannel Key,ImagingLevel2 Key,Image Assay Type,Image Protocol Link,Image Platform Model,Image Platform Manufacturer,Image Software,Image Objective,Image Nominal Magnification,Image Lense Aperture,Image Working Distance,Image Immersion Type,Image Pyramidal,Image Z stack,Image Timeseries,Image FOV Index,Image FOV Size X,Image FOV Size Y,Image FOV Size Y Unit,Image Frame Averaging -ImagingLevel3Image,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/ImagingLevel3Segments.csv b/templates/ImagingLevel3Segments.csv deleted file mode 100644 index bf4bf6f3..00000000 --- a/templates/ImagingLevel3Segments.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel3Segments_id,Filename,ImagingLevel2 Key,ImagingLevel3Image Key,Image Segmentation Data Type,Image Parameter file,Software and Version,Image Object Class,Image Object Class Description,Image Number of Objects -ImagingLevel3Segments,,,,,,,,,, \ No newline at end of file diff --git a/templates/ImagingLevel4.csv b/templates/ImagingLevel4.csv deleted file mode 100644 index 74f9857a..00000000 --- a/templates/ImagingLevel4.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ImagingLevel4_id,Filename,ImagingLevel2 Key,ImagingLevel3Image Key,ImagingLevel3Segments Key,Image Parameter file,Image Software,Image Number of Objects,Image Number of Features,Image Object Class,Image Summary Statistic -ImagingLevel4,,,,,,,,,,, \ No newline at end of file diff --git a/templates/Individual.csv b/templates/Individual.csv deleted file mode 100644 index abea9720..00000000 --- a/templates/Individual.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Individual_id,Study Key,Individual dbGaP Subject Id,Individual Sex,Individual Gender,Individual Age at Diagnosis,Individual Disease Type,Individual Primary Diagnosis,Individual Primary Site,Individual Primary Tumor Stage,Individual Site of Origin,Individual Tumor Subtype,Individual Tumor Grade,Individual Tumor Lymph Node Stage,Individual Known Metastasis Sites,Individual Metastasis Stage,Individual Treatment Type,Individual Therapeutic Agent,Individual Days to Treatment,Individual Treatment Outcome,Individual Days to Last Followup,Individual Recurrence Status,Individual Days To Recurrence,Individual Days to Last Known Disease Status,Individual Last Known Disease Status -Individual,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/Model.csv b/templates/Model.csv deleted file mode 100644 index b00dcc52..00000000 --- a/templates/Model.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Model_id,Study Key,Individual Key,Model Age,Model Age Unit,Model Sex,Model Primary Diagnosis,Model Site of Origin,Model Tumor Type,Model Tumor Subtype,Model Species,Model Type,Model Method,Model Source,Model Acquisition Type,Model Graft Source,Model Genotype,Model Treatment Type,Model Therapeutic Agent -Model,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/NanoStringGeoMXROISegmentAnnotation.csv b/templates/NanoStringGeoMXROISegmentAnnotation.csv deleted file mode 100644 index 317d5327..00000000 --- a/templates/NanoStringGeoMXROISegmentAnnotation.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMXROISegmentAnnotation_id,Biospecimen Key,GeoMx Scan name,GeoMx ROI Name,GeoMx AOI Name,GeoMx Tags,GeoMx ROI X Coordinate,GeoMx ROI Y Coordinate,GeoMx AOI X Coordinate,GeoMx AOI Y Coordinate,GeoMx QC status,GeoMx Scan Height,GeoMx Scan Width,GeoMx Scan Offset X,GeoMx Scan Offset Y,GeoMx Binding Density,GeoMx Positive norm factor,GeoMx Surface area,GeoMx Nuclei count,GeoMx Tissue Stain,GeoMx Slide name,NGS Raw reads,NGS Stitched reads,NGS Aligned reads,NGS Deduplicated reads,NGS Trimmed reads,NGS Sequencing Coverage,NGS MapQ30,GeoMx Negative count mean,GeoMx No Template Control count,GeoMx Excluded Outlier Probes,GeoMx Limit of Quantification -NanoStringGeoMXROISegmentAnnotation,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/NanoStringGeoMxAuxiliaryFiles.csv b/templates/NanoStringGeoMxAuxiliaryFiles.csv deleted file mode 100644 index e16193f5..00000000 --- a/templates/NanoStringGeoMxAuxiliaryFiles.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxAuxiliaryFiles_id,Synapse ID of GeoMx DSP ROI Segment Annotation File,Synapse ID of GeoMx DSP PKC File,Synapse ID of GeoMx Lab Worksheet File,Synapse ID of GeoMx DSP Config File -NanoStringGeoMxAuxiliaryFiles,,,,, \ No newline at end of file diff --git a/templates/NanoStringGeoMxDSPImaging.csv b/templates/NanoStringGeoMxDSPImaging.csv deleted file mode 100644 index 695c29ff..00000000 --- a/templates/NanoStringGeoMxDSPImaging.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPImaging_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxDSPLevel2 Key,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,GeoMx Imaging Channel Names -NanoStringGeoMxDSPImaging,,,,,,, \ No newline at end of file diff --git a/templates/NanoStringGeoMxDSPImagingLevel2.csv b/templates/NanoStringGeoMxDSPImagingLevel2.csv deleted file mode 100644 index 093b7c01..00000000 --- a/templates/NanoStringGeoMxDSPImagingLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPImagingLevel2_id,Project Key,Study Key,Filename,File Format,Parent Biospecimen ID,Synapse ID of Data File,Synapse ID of GeoMx ROI Segment Annotation File,ROI Name,AOI Name,Imaging Channel Names -NanoStringGeoMxDSPImagingLevel2,,,,,,,,,,, \ No newline at end of file diff --git a/templates/NanoStringGeoMxDSPLevel1.csv b/templates/NanoStringGeoMxDSPLevel1.csv deleted file mode 100644 index 5bf23135..00000000 --- a/templates/NanoStringGeoMxDSPLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPLevel1_id,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,Filename,GeoMx DSP Assay Type,NGS Target Sequencing Depth,NGS Read Length,NGS Sequencing Platform,NGS Library Selection Method,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version -NanoStringGeoMxDSPLevel1,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/NanoStringGeoMxDSPLevel2.csv b/templates/NanoStringGeoMxDSPLevel2.csv deleted file mode 100644 index 4711f36f..00000000 --- a/templates/NanoStringGeoMxDSPLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPLevel2_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxAuxiliaryFiles Key,NanoStringGeoMXROISegmentAnnotation Key,GeoMx DSP Assay Type,Software and Version,Genomic Reference,NGS Sequencing Platform,NGS Library Selection Method,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version -NanoStringGeoMxDSPLevel2,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/NanoStringGeoMxDSPLevel3.csv b/templates/NanoStringGeoMxDSPLevel3.csv deleted file mode 100644 index 38b6e0d2..00000000 --- a/templates/NanoStringGeoMxDSPLevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,NanoStringGeoMxDSPLevel3_id,Filename,NanoStringGeoMxDSPLevel1 Key,NanoStringGeoMxDSPLevel2 Key,NanoStringGeoMxAuxiliaryFiles Key,NGS Unique Probe Count,NGS Unique Target Count,NGS Matrix Type,Workflow Type,Workflow Parameter Description,Workflow Link -NanoStringGeoMxDSPLevel3,,,,,,,,,,, \ No newline at end of file diff --git a/templates/PersonView.csv b/templates/PersonView.csv deleted file mode 100644 index 3c426a2b..00000000 --- a/templates/PersonView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,PersonView_id,GrantView Key,Person Consortium Name,Name,Alternative Names,Email,Url,Orcid Id,Synapse Profile Id,Last Known Institution,Working Group Participation,Chair Roles,Consent For Portal Display,Portal Display,Person Publications,Person Datasets,Person Tools,Person Educational Resources -PersonView,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/ProjectView.csv b/templates/ProjectView.csv deleted file mode 100644 index fe5fb134..00000000 --- a/templates/ProjectView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ProjectView_id,GrantView Key,Project Name,Project Type,Project Description,Project Investigator -ProjectView,,,,,, \ No newline at end of file diff --git a/templates/PublicationView.csv b/templates/PublicationView.csv deleted file mode 100644 index fb16391a..00000000 --- a/templates/PublicationView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,PublicationView_id,Study Key,Publication Doi,Publication Journal,Pubmed Id,Pubmed Url,Publication Title,Publication Year,Publication Keywords,Publication Authors,Publication Abstract,Publication Assay,Publication Tumor Type,Publication Tissue,Publication Accessibility -PublicationView,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/SequencingLevel1.csv b/templates/SequencingLevel1.csv deleted file mode 100644 index 5a4e3874..00000000 --- a/templates/SequencingLevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,SequencingLevel1_id,Filename,NGS Library Strategy,NGS Library Source,NGS Library Selection Method,NGS Library Layout,NGS Sequencing Platform,NGS Sequencing Design Description,NGS Library Preparation Kit Name,NGS Library Preparation Kit Vendor,NGS Library Preparation Kit Version,NGS Read Indicator,NGS Library Preparation Days from Index,NGS Sequencing Library Construction Days from Index -SequencingLevel1,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/SequencingLevel2.csv b/templates/SequencingLevel2.csv deleted file mode 100644 index e71a04bd..00000000 --- a/templates/SequencingLevel2.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,SequencingLevel2_id,SequencingLevel1 Key,Filename,NGS Library Strategy,NGS Library Source,NGS Library Selection Method,NGS Library Layout,NGS Sequencing Platform,NGS Sequencing Design Description,NGS Raw reads,NGS Stitched reads,NGS Aligned reads,NGS Deduplicated reads,NGS Trimmed reads,NGS MapQ30,NGS Unique Bases,NGS Read Length,NGS Sequencing Coverage,Genomic Reference,Software and Version -SequencingLevel2,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/SequencingLevel3.csv b/templates/SequencingLevel3.csv deleted file mode 100644 index 053d8141..00000000 --- a/templates/SequencingLevel3.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,SequencingLevel3_id,SequencingLevel2 Key,Filename,NGS Unique Probe Count,NGS Unique Target Count,NGS Matrix Type,Software and Version -SequencingLevel3,,,,,,, \ No newline at end of file diff --git a/templates/SequencingRNALevel1.csv b/templates/SequencingRNALevel1.csv deleted file mode 100644 index a99c79f5..00000000 --- a/templates/SequencingRNALevel1.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,SequencingRNALevel1_id,Filename,NGS RNA End Bias,NGS RNA Reverse Transcription Primer,NGS RNA RIN,NGS RNA DV200 -SequencingRNALevel1,,,,,, \ No newline at end of file diff --git a/templates/Study.csv b/templates/Study.csv deleted file mode 100644 index 7abf7c45..00000000 --- a/templates/Study.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,Study_id,GrantView Key,ProjectView Key,Study dbGaP Accession Id,Study Name,Study Description,Study Investigator,PersonView Key,Study Number of Participants,Study De-identification Method Type,Study De-identification Method Description,Study De-identification Method Software,Study Reuse Statement,Study Data Use Codes,Study License -Study,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/ToolView.csv b/templates/ToolView.csv deleted file mode 100644 index 644f2044..00000000 --- a/templates/ToolView.csv +++ /dev/null @@ -1,2 +0,0 @@ -Component,ToolView_id,Study key,DatasetView Key,PublicationView Key,Tool Name,Tool Description,Tool Homepage,Tool Version,Tool Operation,Tool Input Data,Tool Output Data,Tool Input Format,Tool Output Format,Tool Function Note,Tool Cmd,Tool Type,Tool Topic,Tool Operating System,Tool Language,Tool License,Tool Cost,Tool Accessibility,Tool Download Url,Tool Download Type,Tool Download Note,Tool Download Version,Tool Documentation Url,Tool Documentation Type,Tool Documentation Note,Tool Link Url,Tool Link Type,Tool Link Note,Tool Date Last Modified,Tool Release Date,Tool Package Dependencies,Tool Package Dependencies Present,Tool Compute Requirements,Tool Entity Name,Tool Entity Type,Tool Entity Role -ToolView,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file From 567f4ba360e5a96d445d9688e3b6dbaba2570b61 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 18 Mar 2025 15:48:57 -0700 Subject: [PATCH 060/106] Update annotationProperty.csv Remove Model Tumor Type and mark Model Sex, Model Type as required columns --- modules/model/annotationProperty.csv | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/model/annotationProperty.csv b/modules/model/annotationProperty.csv index 96bdac60..48e2bd9d 100644 --- a/modules/model/annotationProperty.csv +++ b/modules/model/annotationProperty.csv @@ -1,13 +1,13 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Type, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, +Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, Model_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,,unique Model Age,"The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)",,,FALSE,,,,,num Model Age Unit,The unit corresponding to the age provided for this model.,,,FALSE,,,,,str Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,, Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like -Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like -Model Type,The general label used to identify the model type.,,,FALSE,,,,,str +Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +Model Type,The general label used to identify the model type.,,,TRUE,,,,,str Model Method,The term that describes the general method used to create the model.,,,FALSE,,,,,str Model Source,"The reference organism from which the model was derived, if applicable. This could be a specific Biospecimen Key, Model Key, mouse type, cell line, or other reference. Provide RRID if available, to link to existing cell line information. Do not use this field to designate an Individual as the source of the model.",,,FALSE,,,,,str Model Acquisition Type,"The method by which the model was obtained. If applicable, please provide a link to the supplier of the model source.",,,FALSE,,,,,str From 25d5e67afb28edaf6beabc5f9f697fd200523329 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 18 Mar 2025 16:04:55 -0700 Subject: [PATCH 061/106] Collate CSVs and build JSON-LD schematic 24.12.1 --- mc2.model.csv | 20 +- mc2.model.jsonld | 419 +++++++++++++++++++++------- modules/file/annotationProperty.csv | 2 +- 3 files changed, 328 insertions(+), 113 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 3f61d1d4..53d17e7a 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -51,6 +51,15 @@ Consortium Description,Description of research consortium,,,TRUE,,,,, Consortium Funding Agency,Funding agency of research consortium ,NIH,,TRUE,,,,, Website,Website of research consortium,,,TRUE,,,,,url Consortium_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +community,The Sage Bionetworks project or initiative with which the dataset is associated.,,,FALSE,,,,Synapse Data Catalog,str +description,A text description of the dataset. Can be identifical to Dataset Description.,,,FALSE,,,,Synapse Data Catalog,str +contributors,The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.,,,FALSE,,,,Synapse Data Catalog,list like +keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,FALSE,,,,Synapse Data Catalog,list like +individuals,"The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples",,,FALSE,,,,Synapse Data Catalog,int +link,"The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.",,,FALSE,,,,Synapse Data Catalog,url +croissant,A Synapse url where the croissant file associated with this dataset is stored.,,,FALSE,,,,Synapse Data Catalog,url +DataCatalog,The manifest used to describe datasets for the Synapse Data Catalog.,,"Component, DataCatalog_id, community, description, contributors, keywords, individuals, link, croissant",FALSE,,,Study,Synapse Data Catalog, +DataCatalog_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,MC2,unique Dataset Name,Name of the dataset,,,TRUE,,,,, Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique Dataset Description,Description of the dataset.,,,FALSE,,,,, @@ -102,7 +111,7 @@ File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str +File Longitudinal Event Type,The type of event to which File Longitudinal Total Time Elapsed is related,"Enrollment, Baseline",,FALSE,,,,,str File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num @@ -157,7 +166,7 @@ Grant Name,Name of the grant,,,TRUE,,,,, Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ Grant Abstract,Abstract for the grant,,,TRUE,,,,, Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, -Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, +Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, Grant End Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Albert Einstein College of Medicine, Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beckman Research Institute of City of Hope, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Clemson University, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Purdue University, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of Arkansas at Fayetteville, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"AECM, ASU, AU, BCM, BIDMC, BMC, BRI, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Clemson, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Purdue, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UARK, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like @@ -170,6 +179,7 @@ Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date +Grant End Date,The end date of the grant YYYY-MM-DD format,,,TRUE,,,,,date Imaging Channel,Channel-level Metadata Attributes,,"Component, ImagingChannel_id, Study Key, Channel Identifier, Channel Name, Channel Passed QC, Channel Cycle Number, Channel Sub-cycle Number, Channel Antibody Role, Channel Target Name, Channel Antibody Name, Channel Resource ID, Channel Fluorophore, Channel Antibody Clone, Channel Antibody Lot, Channel Antibody Vendor, Channel Antibody Catalog Number, Channel Excitation Wavelength, Channel Emission Wavelength, Channel Excitation Bandwidth, Channel Emission Bandwidth, Channel Metal Symbol, Channel Metal Isotope, Channel Oligo Barcode Upper Strand, Channel Oligo Barcode Lower Strand, Channel Probe Dilution Ratio, Channel Probe Concentration",FALSE,,,,HTAN, ImagingChannel_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, Channel Identifier,This must match the corresponding field in the OME-XML / TIFF header. (eg 'Channel:0:1'),,,TRUE,,,,HTAN, @@ -286,15 +296,15 @@ Institution Alias,"Alias of the institution (e.g. ASU, BU, etc.)",,,TRUE,,,,,uni Institution Location State,"The US state the institution is located in. Use Not Applicable, if not applicable. ","Alabama, Alaska, American Samoa, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, District of Columbia, Florida, Georgia, Guam, Hawaii, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Minor Outlying Islands, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Northern Mariana Islands, Not Applicable, Ohio, Oklahoma, Oregon, Pennsylvania, Puerto Rico, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, U.S. Virgin Islands, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin, Wyoming",,TRUE,,,,, Institution Location City,The City the institution is located in. ,,,TRUE,,,,, Rorid,Unique identifier (ROR ID) of an the institution,,,TRUE,,,,, -Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Type, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, +Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, Model_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,,unique Model Age,"The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)",,,FALSE,,,,,num Model Age Unit,The unit corresponding to the age provided for this model.,,,FALSE,,,,,str Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,, Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like -Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like -Model Type,The general label used to identify the model type.,,,FALSE,,,,,str +Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +Model Type,The general label used to identify the model type.,,,TRUE,,,,,str Model Method,The term that describes the general method used to create the model.,,,FALSE,,,,,str Model Source,"The reference organism from which the model was derived, if applicable. This could be a specific Biospecimen Key, Model Key, mouse type, cell line, or other reference. Provide RRID if available, to link to existing cell line information. Do not use this field to designate an Individual as the source of the model.",,,FALSE,,,,,str Model Acquisition Type,"The method by which the model was obtained. If applicable, please provide a link to the supplier of the model source.",,,FALSE,,,,,str diff --git a/mc2.model.jsonld b/mc2.model.jsonld index b8284322..e7ee5c27 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -27774,9 +27774,6 @@ { "@id": "bts:ModelSiteofOrigin" }, - { - "@id": "bts:ModelTumorType" - }, { "@id": "bts:ModelTumorSubtype" }, @@ -202028,6 +202025,293 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:Community", + "@type": "rdfs:Class", + "rdfs:comment": "The Sage Bionetworks project or initiative with which the dataset is associated.", + "rdfs:label": "Community", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "community", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:Description", + "@type": "rdfs:Class", + "rdfs:comment": "A text description of the dataset. Can be identifical to Dataset Description.", + "rdfs:label": "Description", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "description", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:Contributors", + "@type": "rdfs:Class", + "rdfs:comment": "The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.", + "rdfs:label": "Contributors", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "contributors", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Keywords", + "@type": "rdfs:Class", + "rdfs:comment": "Keywords associated with the dataset. Can be identical to Publication Keywords.", + "rdfs:label": "Keywords", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "keywords", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Individuals", + "@type": "rdfs:Class", + "rdfs:comment": "The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples", + "rdfs:label": "Individuals", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "individuals", + "sms:required": "sms:false", + "sms:validationRules": [ + "int" + ] + }, + { + "@id": "bts:Link", + "@type": "rdfs:Class", + "rdfs:comment": "The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.", + "rdfs:label": "Link", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "link", + "sms:required": "sms:false", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:Croissant", + "@type": "rdfs:Class", + "rdfs:comment": "A Synapse url where the croissant file associated with this dataset is stored.", + "rdfs:label": "Croissant", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "croissant", + "sms:required": "sms:false", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:DataCatalog", + "@type": "rdfs:Class", + "rdfs:comment": "The manifest used to describe datasets for the Synapse Data Catalog.", + "rdfs:label": "DataCatalog", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataCatalog", + "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:Study" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:DataCatalogId" + }, + { + "@id": "bts:Community" + }, + { + "@id": "bts:Description" + }, + { + "@id": "bts:Contributors" + }, + { + "@id": "bts:Keywords" + }, + { + "@id": "bts:Individuals" + }, + { + "@id": "bts:Link" + }, + { + "@id": "bts:Croissant" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:DataCatalogId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "DataCatalogId", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataCatalog_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:Study", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Study", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "study", + "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:GrantView" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:StudyId" + }, + { + "@id": "bts:GrantViewKey" + }, + { + "@id": "bts:ProjectViewKey" + }, + { + "@id": "bts:StudydbGaPAccessionId" + }, + { + "@id": "bts:StudyName" + }, + { + "@id": "bts:StudyDescription" + }, + { + "@id": "bts:StudyInvestigator" + }, + { + "@id": "bts:PersonViewKey" + }, + { + "@id": "bts:StudyNumberofParticipants" + }, + { + "@id": "bts:StudyDe-identificationMethodType" + }, + { + "@id": "bts:StudyDe-identificationMethodDescription" + }, + { + "@id": "bts:StudyDe-identificationMethodSoftware" + }, + { + "@id": "bts:StudyIndexDate" + }, + { + "@id": "bts:StudyReuseStatement" + }, + { + "@id": "bts:StudyDataUseCodes" + }, + { + "@id": "bts:StudyLicense" + }, + { + "@id": "bts:StudySourceGeography" + }, + { + "@id": "bts:StudyDataPermission" + }, + { + "@id": "bts:StudyDataTier" + } + ], + "sms:validationRules": [] + }, { "@id": "bts:DatasetName", "@type": "rdfs:Class", @@ -221589,90 +221873,6 @@ "list like" ] }, - { - "@id": "bts:Study", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Study", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "study", - "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:GrantView" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:StudyId" - }, - { - "@id": "bts:GrantViewKey" - }, - { - "@id": "bts:ProjectViewKey" - }, - { - "@id": "bts:StudydbGaPAccessionId" - }, - { - "@id": "bts:StudyName" - }, - { - "@id": "bts:StudyDescription" - }, - { - "@id": "bts:StudyInvestigator" - }, - { - "@id": "bts:PersonViewKey" - }, - { - "@id": "bts:StudyNumberofParticipants" - }, - { - "@id": "bts:StudyDe-identificationMethodType" - }, - { - "@id": "bts:StudyDe-identificationMethodDescription" - }, - { - "@id": "bts:StudyDe-identificationMethodSoftware" - }, - { - "@id": "bts:StudyIndexDate" - }, - { - "@id": "bts:StudyReuseStatement" - }, - { - "@id": "bts:StudyDataUseCodes" - }, - { - "@id": "bts:StudyLicense" - }, - { - "@id": "bts:StudySourceGeography" - }, - { - "@id": "bts:StudyDataPermission" - }, - { - "@id": "bts:StudyDataTier" - } - ], - "sms:validationRules": [] - }, { "@id": "bts:DatasetGrantNumber", "@type": "rdfs:Class", @@ -230090,6 +230290,9 @@ { "@id": "bts:GrantStartDate" }, + { + "@id": "bts:GrantEndDate" + }, { "@id": "bts:NIHRePORTERLink" }, @@ -246116,7 +246319,7 @@ { "@id": "bts:FileLongitudinalEventType", "@type": "rdfs:Class", - "rdfs:comment": "The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)", + "rdfs:comment": "The type of event to which File Longitudinal Total Time Elapsed is related", "rdfs:label": "FileLongitudinalEventType", "rdfs:subClassOf": [ { @@ -253521,6 +253724,25 @@ "date" ] }, + { + "@id": "bts:GrantEndDate", + "@type": "rdfs:Class", + "rdfs:comment": "The end date of the grant YYYY-MM-DD format", + "rdfs:label": "GrantEndDate", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Grant End Date", + "sms:required": "sms:true", + "sms:validationRules": [ + "date" + ] + }, { "@id": "bts:NIHRePORTERLink", "@type": "rdfs:Class", @@ -289287,23 +289509,6 @@ "sms:required": "sms:true", "sms:validationRules": [] }, - { - "@id": "bts:ModelTumorType", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ModelTumorType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Model Tumor Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:ModelTumorSubtype", "@type": "rdfs:Class", @@ -289426,7 +289631,7 @@ } ], "sms:displayName": "Model Species", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "list like" ] @@ -289445,7 +289650,7 @@ "@id": "http://schema.biothings.io" }, "sms:displayName": "Model Type", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "str" ] diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index 97da505b..d5532964 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -10,7 +10,7 @@ File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str -File Longitudinal Event Type,"The type of event to which File Longitudinal Total Time Elapsed is related","Enrollment, Baseline",,FALSE,,,,,str +File Longitudinal Event Type,The type of event to which File Longitudinal Total Time Elapsed is related,"Enrollment, Baseline",,FALSE,,,,,str File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num From 6755c53a8136ebe9e1500a3972f00137c8d04cdc Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 19 Mar 2025 12:43:39 -0700 Subject: [PATCH 062/106] Move shared valid values to shared folder --- modules/{study => shared}/dataTier.csv | 0 modules/{study => shared}/sourceGeography.csv | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename modules/{study => shared}/dataTier.csv (100%) rename modules/{study => shared}/sourceGeography.csv (100%) diff --git a/modules/study/dataTier.csv b/modules/shared/dataTier.csv similarity index 100% rename from modules/study/dataTier.csv rename to modules/shared/dataTier.csv diff --git a/modules/study/sourceGeography.csv b/modules/shared/sourceGeography.csv similarity index 100% rename from modules/study/sourceGeography.csv rename to modules/shared/sourceGeography.csv From f6ca6e62aec6a7e004643f708ee5b6f5518d9ab6 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 19 Mar 2025 12:44:53 -0700 Subject: [PATCH 063/106] Update annotationProperty.csv Add additional dataCatalog attributes defined in sage-datasets schema: https://raw.githubusercontent.com/Sage-Bionetworks/core-models/cbad4328d388929c93e4fd8bc7c8a4eee97ee934/data-models/sage-datasets/datasets-json-schema.json --- modules/dataCatalog/annotationProperty.csv | 18 ++++++++++++++++-- 1 file changed, 16 insertions(+), 2 deletions(-) diff --git a/modules/dataCatalog/annotationProperty.csv b/modules/dataCatalog/annotationProperty.csv index cc9da1eb..41c11638 100644 --- a/modules/dataCatalog/annotationProperty.csv +++ b/modules/dataCatalog/annotationProperty.csv @@ -1,10 +1,24 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules community,The Sage Bionetworks project or initiative with which the dataset is associated.,,,FALSE,,,,Synapse Data Catalog,str description,A text description of the dataset. Can be identifical to Dataset Description.,,,FALSE,,,,Synapse Data Catalog,str -contributors,The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.,,,FALSE,,,,Synapse Data Catalog,list like -keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,FALSE,,,,Synapse Data Catalog,list like +contributor,"Organization(s), insitution(s), or person(s) that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.",,,FALSE,,,,Synapse Data Catalog,list like +keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,TRUE,,,,Synapse Data Catalog,list like individuals,"The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples",,,FALSE,,,,Synapse Data Catalog,int link,"The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.",,,FALSE,,,,Synapse Data Catalog,url croissant,A Synapse url where the croissant file associated with this dataset is stored.,,,FALSE,,,,Synapse Data Catalog,url DataCatalog,The manifest used to describe datasets for the Synapse Data Catalog.,,"Component, DataCatalog_id, community, description, contributors, keywords, individuals, link, croissant",FALSE,,,Study,Synapse Data Catalog, DataCatalog_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,MC2,unique +accessType,Access type for the dataset.,"Anonymous, Open, Controlled, Private",,FALSE,,,,schema.org/dataset,str +alternateName,An altername name that can be used for search and discovery improvement.,,,FALSE,,,,schema.org/dataset,str +conditionsOfAccess,"Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown.",,,FALSE,,,,schema.org/dataset,str +countryOfOrigin,Origin of individuals from which data were generated. Omit if not applicable/unknown.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,schema.org/dataset,list like +creator,Organization or person that is creator of the dataset. Default is the PI of the project and/or the user who created all files in the dataset.,,,TRUE,,,,schema.org/dataset,str +dataUseModifiers,"List of data use ontology (DUO) terms that are true for dataset, which describes the allowable scope and terms for data use. Omit property if not applicable/unknown.","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,schema.org/dataset,list like +datePublished,Date data were published/available on Synapse.,,,FALSE,,,,schema.org/dataset,int +funder,The entity(ies) responsible for funding the data contributors.,NIH,,FALSE,,,,schema.org/dataset,list like +includedInDataCatalog,Link(s) to known data catalog(s) the dataset is included in.,,,FALSE,,,,schema.org/dataset,str +license,"The terms and conditions underwhich the data are allowed to be accessed and used. Unless information for license is clear, this should default to UNKNOWN.","CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,schema.org/dataset,str +measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,FALSE,,,,schema.org/dataset,list like +species,"Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,schema.org/dataset,list like +subject,Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme.,,,FALSE,,,,schema.org/dataset,list like +title,The name of the dataset.,,,TRUE,,,,schema.org/dataset,str From 88ecb8e2b5e1145b2349f1059820a951e4d00658 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 19 Mar 2025 12:45:14 -0700 Subject: [PATCH 064/106] Update mapping.yaml Add valid value mappings for dataCatalog model --- modules/mapping.yaml | 20 ++++++++++++++++++-- 1 file changed, 18 insertions(+), 2 deletions(-) diff --git a/modules/mapping.yaml b/modules/mapping.yaml index 5f0dc072..da78fe9b 100644 --- a/modules/mapping.yaml +++ b/modules/mapping.yaml @@ -86,6 +86,22 @@ sharingPlans: - name: DSP Data Use Codes src: shared/duo.csv +dataCatalog: + - name: accessType + src: shared/dataTier.csv + - name: countryOfOrigin + src: shared/sourceGeography.csv + - name: dataUseModifiers + src: shared/duo.csv + - name: funder + src: consortium/consortium_funding_agency.csv + - name: license + src: study/studyLicense.csv + - name: measurementTechnique + src: shared/assay.csv + - name: species + src: shared/dataset_species.csv + education: - name: Resource Topic src: education/ed_topic.csv @@ -308,11 +324,11 @@ study: - name: Study Index Date src: study/indexDate.csv - name: Study Source Geography - src: study/sourceGeography.csv + src: shared/sourceGeography.csv - name: Study Data Permission src: study/dataPermission.csv - name: Study Data Tier - src: study/dataTier.csv + src: shared/dataTier.csv tool: - name: Tool Grant Number From 45732e23b9ffb8c124a5e9f2e20868a245ad7e97 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 19 Mar 2025 12:45:19 -0700 Subject: [PATCH 065/106] Update all_valid_values.csv --- all_valid_values.csv | 524 +++++++++++++++++++++---------------------- 1 file changed, 262 insertions(+), 262 deletions(-) diff --git a/all_valid_values.csv b/all_valid_values.csv index 39ba6108..cf726822 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -8910,6 +8910,265 @@ duo,GS, duo,DS, duo,GRU, duo,PS, +dataTier,Anonymous, +dataTier,Open, +dataTier,Controlled, +dataTier,Private, +sourceGeography,AD, +sourceGeography,AE, +sourceGeography,AF, +sourceGeography,AG, +sourceGeography,AI, +sourceGeography,AL, +sourceGeography,AM, +sourceGeography,AO, +sourceGeography,AQ, +sourceGeography,AR, +sourceGeography,AS, +sourceGeography,AT, +sourceGeography,AU, +sourceGeography,AW, +sourceGeography,AX, +sourceGeography,AZ, +sourceGeography,BA, +sourceGeography,BB, +sourceGeography,BD, +sourceGeography,BE, +sourceGeography,BF, +sourceGeography,BG, +sourceGeography,BH, +sourceGeography,BI, +sourceGeography,BJ, +sourceGeography,BL, +sourceGeography,BM, +sourceGeography,BN, +sourceGeography,BO, +sourceGeography,BQ, +sourceGeography,BR, +sourceGeography,BS, +sourceGeography,BT, +sourceGeography,BV, +sourceGeography,BW, +sourceGeography,BY, +sourceGeography,BZ, +sourceGeography,CA, +sourceGeography,CC, +sourceGeography,CD, +sourceGeography,CF, +sourceGeography,CG, +sourceGeography,CH, +sourceGeography,CI, +sourceGeography,CK, +sourceGeography,CL, +sourceGeography,CM, +sourceGeography,CN, +sourceGeography,CO, +sourceGeography,CR, +sourceGeography,CU, +sourceGeography,CV, +sourceGeography,CW, +sourceGeography,CX, +sourceGeography,CY, +sourceGeography,CZ, +sourceGeography,DE, +sourceGeography,DJ, +sourceGeography,DK, +sourceGeography,DM, +sourceGeography,DO, +sourceGeography,DZ, +sourceGeography,EC, +sourceGeography,EE, +sourceGeography,EG, +sourceGeography,EH, +sourceGeography,ER, +sourceGeography,ES, +sourceGeography,ET, +sourceGeography,FI, +sourceGeography,FJ, +sourceGeography,FK, +sourceGeography,FM, +sourceGeography,FO, +sourceGeography,FR, +sourceGeography,GA, +sourceGeography,GB, +sourceGeography,GD, +sourceGeography,GE, +sourceGeography,GF, +sourceGeography,GG, +sourceGeography,GH, +sourceGeography,GI, +sourceGeography,GL, +sourceGeography,GM, +sourceGeography,GN, +sourceGeography,GP, +sourceGeography,GQ, +sourceGeography,GR, +sourceGeography,GS, +sourceGeography,GT, +sourceGeography,GU, +sourceGeography,GW, +sourceGeography,GY, +sourceGeography,HK, +sourceGeography,HM, +sourceGeography,HN, +sourceGeography,HR, +sourceGeography,HT, +sourceGeography,HU, +sourceGeography,ID, +sourceGeography,IE, +sourceGeography,IL, +sourceGeography,IM, +sourceGeography,IN, +sourceGeography,IO, +sourceGeography,IQ, +sourceGeography,IR, +sourceGeography,IS, +sourceGeography,IT, +sourceGeography,JE, +sourceGeography,JM, +sourceGeography,JO, +sourceGeography,JP, +sourceGeography,KE, +sourceGeography,KG, +sourceGeography,KH, +sourceGeography,KI, +sourceGeography,KM, +sourceGeography,KN, +sourceGeography,KP, +sourceGeography,KR, +sourceGeography,KW, +sourceGeography,KY, +sourceGeography,KZ, +sourceGeography,LA, +sourceGeography,LB, +sourceGeography,LC, +sourceGeography,LI, +sourceGeography,LK, +sourceGeography,LR, +sourceGeography,LS, +sourceGeography,LT, +sourceGeography,LU, +sourceGeography,LV, +sourceGeography,LY, +sourceGeography,MA, +sourceGeography,MC, +sourceGeography,MD, +sourceGeography,ME, +sourceGeography,MF, +sourceGeography,MG, +sourceGeography,MH, +sourceGeography,MK, +sourceGeography,ML, +sourceGeography,MM, +sourceGeography,MN, +sourceGeography,MO, +sourceGeography,MP, +sourceGeography,MQ, +sourceGeography,MR, +sourceGeography,MS, +sourceGeography,MT, +sourceGeography,MU, +sourceGeography,MV, +sourceGeography,MW, +sourceGeography,MX, +sourceGeography,MY, +sourceGeography,MZ, +sourceGeography,NA, +sourceGeography,NC, +sourceGeography,NE, +sourceGeography,NF, +sourceGeography,NG, +sourceGeography,NI, +sourceGeography,NL, +sourceGeography,NO, +sourceGeography,NP, +sourceGeography,NR, +sourceGeography,NU, +sourceGeography,NZ, +sourceGeography,OM, +sourceGeography,PA, +sourceGeography,PE, +sourceGeography,PF, +sourceGeography,PG, +sourceGeography,PH, +sourceGeography,PK, +sourceGeography,PL, +sourceGeography,PM, +sourceGeography,PN, +sourceGeography,PR, +sourceGeography,PS, +sourceGeography,PT, +sourceGeography,PW, +sourceGeography,PY, +sourceGeography,QA, +sourceGeography,RE, +sourceGeography,RO, +sourceGeography,RS, +sourceGeography,RU, +sourceGeography,RW, +sourceGeography,SA, +sourceGeography,SB, +sourceGeography,SC, +sourceGeography,SD, +sourceGeography,SE, +sourceGeography,SG, +sourceGeography,SH, +sourceGeography,SI, +sourceGeography,SJ, +sourceGeography,SK, +sourceGeography,SL, +sourceGeography,SM, +sourceGeography,SN, +sourceGeography,SO, +sourceGeography,SR, +sourceGeography,SS, +sourceGeography,ST, +sourceGeography,SV, +sourceGeography,SX, +sourceGeography,SY, +sourceGeography,SZ, +sourceGeography,TC, +sourceGeography,TD, +sourceGeography,TF, +sourceGeography,TG, +sourceGeography,TH, +sourceGeography,TJ, +sourceGeography,TK, +sourceGeography,TL, +sourceGeography,TM, +sourceGeography,TN, +sourceGeography,TO, +sourceGeography,TR, +sourceGeography,TT, +sourceGeography,TV, +sourceGeography,TW, +sourceGeography,TZ, +sourceGeography,UA, +sourceGeography,UG, +sourceGeography,UM, +sourceGeography,US, +sourceGeography,UY, +sourceGeography,UZ, +sourceGeography,VA, +sourceGeography,VC, +sourceGeography,VE, +sourceGeography,VG, +sourceGeography,VI, +sourceGeography,VN, +sourceGeography,VU, +sourceGeography,WF, +sourceGeography,WS, +sourceGeography,YE, +sourceGeography,YT, +sourceGeography,ZA, +sourceGeography,ZM, +sourceGeography,ZW, +studyLicense,CC BY 3.0, +studyLicense,CC BY 4.0, +studyLicense,CC BY-NC 4.0, +studyLicense,CC BY-NC 3.0, +studyLicense,CC BY-SA 4.0, +studyLicense,CC BY-NC-SA 4.0, ed_topic,Computational Model Development, ed_topic,Computational Resource, ed_topic,Diversity/Equity/Inclusion, @@ -10589,276 +10848,17 @@ rtPrimer,Poly-dT, rtPrimer,Feature barcoding, rtPrimer,Random, deIdMethod,Manual, -deIdMethod,Semiautomatic, -deIdMethod,Automatic, -deIdMethod,Not Applicable, -studyLicense,CC BY 3.0, -studyLicense,CC BY 4.0, -studyLicense,CC BY-NC 4.0, -studyLicense,CC BY-NC 3.0, -studyLicense,CC BY-SA 4.0, -studyLicense,CC BY-NC-SA 4.0, +deIdMethod,Semiautomatic, +deIdMethod,Automatic, +deIdMethod,Not Applicable, indexDate,Diagnosis Date , indexDate,Enrollment Date, indexDate,Collection Date, indexDate,Birth Date, -sourceGeography,AD, -sourceGeography,AE, -sourceGeography,AF, -sourceGeography,AG, -sourceGeography,AI, -sourceGeography,AL, -sourceGeography,AM, -sourceGeography,AO, -sourceGeography,AQ, -sourceGeography,AR, -sourceGeography,AS, -sourceGeography,AT, -sourceGeography,AU, -sourceGeography,AW, -sourceGeography,AX, -sourceGeography,AZ, -sourceGeography,BA, -sourceGeography,BB, -sourceGeography,BD, -sourceGeography,BE, -sourceGeography,BF, -sourceGeography,BG, -sourceGeography,BH, -sourceGeography,BI, -sourceGeography,BJ, -sourceGeography,BL, -sourceGeography,BM, -sourceGeography,BN, -sourceGeography,BO, -sourceGeography,BQ, -sourceGeography,BR, -sourceGeography,BS, -sourceGeography,BT, -sourceGeography,BV, -sourceGeography,BW, -sourceGeography,BY, -sourceGeography,BZ, -sourceGeography,CA, -sourceGeography,CC, -sourceGeography,CD, -sourceGeography,CF, -sourceGeography,CG, -sourceGeography,CH, -sourceGeography,CI, -sourceGeography,CK, -sourceGeography,CL, -sourceGeography,CM, -sourceGeography,CN, -sourceGeography,CO, -sourceGeography,CR, -sourceGeography,CU, -sourceGeography,CV, -sourceGeography,CW, -sourceGeography,CX, -sourceGeography,CY, -sourceGeography,CZ, -sourceGeography,DE, -sourceGeography,DJ, -sourceGeography,DK, -sourceGeography,DM, -sourceGeography,DO, -sourceGeography,DZ, -sourceGeography,EC, -sourceGeography,EE, -sourceGeography,EG, -sourceGeography,EH, -sourceGeography,ER, -sourceGeography,ES, -sourceGeography,ET, -sourceGeography,FI, -sourceGeography,FJ, -sourceGeography,FK, -sourceGeography,FM, -sourceGeography,FO, -sourceGeography,FR, -sourceGeography,GA, -sourceGeography,GB, -sourceGeography,GD, -sourceGeography,GE, -sourceGeography,GF, -sourceGeography,GG, -sourceGeography,GH, -sourceGeography,GI, -sourceGeography,GL, -sourceGeography,GM, -sourceGeography,GN, -sourceGeography,GP, -sourceGeography,GQ, -sourceGeography,GR, -sourceGeography,GS, -sourceGeography,GT, -sourceGeography,GU, -sourceGeography,GW, -sourceGeography,GY, -sourceGeography,HK, -sourceGeography,HM, -sourceGeography,HN, -sourceGeography,HR, -sourceGeography,HT, -sourceGeography,HU, -sourceGeography,ID, -sourceGeography,IE, -sourceGeography,IL, -sourceGeography,IM, -sourceGeography,IN, -sourceGeography,IO, -sourceGeography,IQ, -sourceGeography,IR, -sourceGeography,IS, -sourceGeography,IT, -sourceGeography,JE, -sourceGeography,JM, -sourceGeography,JO, -sourceGeography,JP, -sourceGeography,KE, -sourceGeography,KG, -sourceGeography,KH, -sourceGeography,KI, -sourceGeography,KM, -sourceGeography,KN, -sourceGeography,KP, -sourceGeography,KR, -sourceGeography,KW, -sourceGeography,KY, -sourceGeography,KZ, -sourceGeography,LA, -sourceGeography,LB, -sourceGeography,LC, -sourceGeography,LI, -sourceGeography,LK, -sourceGeography,LR, -sourceGeography,LS, -sourceGeography,LT, -sourceGeography,LU, -sourceGeography,LV, -sourceGeography,LY, -sourceGeography,MA, -sourceGeography,MC, -sourceGeography,MD, -sourceGeography,ME, -sourceGeography,MF, -sourceGeography,MG, -sourceGeography,MH, -sourceGeography,MK, -sourceGeography,ML, -sourceGeography,MM, -sourceGeography,MN, -sourceGeography,MO, -sourceGeography,MP, -sourceGeography,MQ, -sourceGeography,MR, -sourceGeography,MS, -sourceGeography,MT, -sourceGeography,MU, -sourceGeography,MV, -sourceGeography,MW, -sourceGeography,MX, -sourceGeography,MY, -sourceGeography,MZ, -sourceGeography,NA, -sourceGeography,NC, -sourceGeography,NE, -sourceGeography,NF, -sourceGeography,NG, -sourceGeography,NI, -sourceGeography,NL, -sourceGeography,NO, -sourceGeography,NP, -sourceGeography,NR, -sourceGeography,NU, -sourceGeography,NZ, -sourceGeography,OM, -sourceGeography,PA, -sourceGeography,PE, -sourceGeography,PF, -sourceGeography,PG, -sourceGeography,PH, -sourceGeography,PK, -sourceGeography,PL, -sourceGeography,PM, -sourceGeography,PN, -sourceGeography,PR, -sourceGeography,PS, -sourceGeography,PT, -sourceGeography,PW, -sourceGeography,PY, -sourceGeography,QA, -sourceGeography,RE, -sourceGeography,RO, -sourceGeography,RS, -sourceGeography,RU, -sourceGeography,RW, -sourceGeography,SA, -sourceGeography,SB, -sourceGeography,SC, -sourceGeography,SD, -sourceGeography,SE, -sourceGeography,SG, -sourceGeography,SH, -sourceGeography,SI, -sourceGeography,SJ, -sourceGeography,SK, -sourceGeography,SL, -sourceGeography,SM, -sourceGeography,SN, -sourceGeography,SO, -sourceGeography,SR, -sourceGeography,SS, -sourceGeography,ST, -sourceGeography,SV, -sourceGeography,SX, -sourceGeography,SY, -sourceGeography,SZ, -sourceGeography,TC, -sourceGeography,TD, -sourceGeography,TF, -sourceGeography,TG, -sourceGeography,TH, -sourceGeography,TJ, -sourceGeography,TK, -sourceGeography,TL, -sourceGeography,TM, -sourceGeography,TN, -sourceGeography,TO, -sourceGeography,TR, -sourceGeography,TT, -sourceGeography,TV, -sourceGeography,TW, -sourceGeography,TZ, -sourceGeography,UA, -sourceGeography,UG, -sourceGeography,UM, -sourceGeography,US, -sourceGeography,UY, -sourceGeography,UZ, -sourceGeography,VA, -sourceGeography,VC, -sourceGeography,VE, -sourceGeography,VG, -sourceGeography,VI, -sourceGeography,VN, -sourceGeography,VU, -sourceGeography,WF, -sourceGeography,WS, -sourceGeography,YE, -sourceGeography,YT, -sourceGeography,ZA, -sourceGeography,ZM, -sourceGeography,ZW, dataPermission,Agreement, dataPermission,Attestation, dataPermission,Award, dataPermission,Other, -dataTier,Anonymous, -dataTier,Open, -dataTier,Controlled, -dataTier,Private, tool_accessibility,Open Access, tool_accessibility,Open Access (With Restrictions), tool_accessibility,Restricted Access, From c634355d553491b8930d0fe994e6d9fb210b9497 Mon Sep 17 00:00:00 2001 From: verena <9377970+vpchung@users.noreply.github.com> Date: Wed, 19 Mar 2025 13:08:46 -0700 Subject: [PATCH 066/106] bump cache version --- .github/workflows/build-docs.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index e1d91266..e57ec44b 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -21,7 +21,7 @@ jobs: with: python-version: 3.x - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV - - uses: actions/cache@v4.0.1 + - uses: actions/cache@v4.2.3 with: key: mkdocs-material-${{ env.cache_id }} path: .cache From 6f4014ed4e8d3f7d3d498fc7e326a89701bb7158 Mon Sep 17 00:00:00 2001 From: verena <9377970+vpchung@users.noreply.github.com> Date: Wed, 19 Mar 2025 13:44:23 -0700 Subject: [PATCH 067/106] add manual dispatch --- .github/workflows/build-docs.yml | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index e57ec44b..b62bcd9c 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -4,9 +4,10 @@ on: branches: - main paths: - - 'docs/**/*.md' - - 'mc2.model.csv' - - 'mkdocs.yml' + - "docs/**/*.md" + - "mc2.model.csv" + - "mkdocs.yml" + workflow_dispatch: jobs: deploy: @@ -20,7 +21,7 @@ jobs: - uses: actions/setup-python@v5.0.0 with: python-version: 3.x - - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV + - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV - uses: actions/cache@v4.2.3 with: key: mkdocs-material-${{ env.cache_id }} From 7a0d808a4e6a4a8199f257e78560aa5ba3efc40e Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 20 Mar 2025 12:58:11 -0700 Subject: [PATCH 068/106] Update annotationProperty.csv Allow multiple assays to be designated for a file. For example, allow selection of "Hematoxylin and Eosin Staining Method" and "Imaging" or "Immunohistochemistry Staining Method" and "Fluorescence Microscopy" --- modules/file/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index d5532964..4c27d273 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -2,7 +2,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsO File Description,Description of the file.,,,FALSE,,,,,str File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, +File Assay,"The assay(s) the file is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like From 210d2ee81c79a79742d81a88609adc34179d886b Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 20 Mar 2025 13:14:58 -0700 Subject: [PATCH 069/106] Make and build JSON-LD schematic 24.12.1 --- mc2.model.csv | 2 +- mc2.model.jsonld | 6 ++++-- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 53d17e7a..8f44c4ac 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -103,7 +103,7 @@ EducationalResource_id,A unique primary key that enables record updates using sc File Description,Description of the file.,,,FALSE,,,,,str File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, +File Assay,"The assay(s) the file is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like diff --git a/mc2.model.jsonld b/mc2.model.jsonld index e7ee5c27..312c90d8 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -242480,7 +242480,7 @@ { "@id": "bts:FileAssay", "@type": "rdfs:Class", - "rdfs:comment": "The assay the file is representative of.", + "rdfs:comment": "The assay(s) the file is representative of. Multiple values permitted, comma separated.", "rdfs:label": "FileAssay", "rdfs:subClassOf": [ { @@ -243634,7 +243634,9 @@ ], "sms:displayName": "File Assay", "sms:required": "sms:true", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { "@id": "bts:FileLevel", From 0e842c27115b8dfac0eabc88f3bc19c24fe3d6f2 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 11:40:01 -0700 Subject: [PATCH 070/106] Create mc2.CA987654-duoCodeAR.schema.json --- .../mc2.CA987654-duoCodeAR.schema.json | 58 +++++++++++++++++++ 1 file changed, 58 insertions(+) create mode 100644 json_schemas/mc2.CA987654-duoCodeAR.schema.json diff --git a/json_schemas/mc2.CA987654-duoCodeAR.schema.json b/json_schemas/mc2.CA987654-duoCodeAR.schema.json new file mode 100644 index 00000000..6e6b6eed --- /dev/null +++ b/json_schemas/mc2.CA987654-duoCodeAR.schema.json @@ -0,0 +1,58 @@ +{ + "$schema": "http://json-schema.org/draft-07/schema", + "title": "MC2 Example CA987654 AR-DUO schema", + "$id": "MC2-CA987654-AR-DUO.1.0", + "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", + "allOf": [ + { + "if": { + "properties": { + "duoCodes": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": "RTN" + } + } + } + }, + "then": { + "properties": { + "_accessRequirementIds": { + "type": "array", + "contains": { + "const": 0 + } + } + } + } + }, + { + "if": { + "properties": { + "duoCodes": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": "NPU" + } + } + } + }, + "then": { + "properties": { + "_accessRequirementIds": { + "type": "array", + "contains": { + "const": 0 + } + } + } + } + } + ] +} \ No newline at end of file From 63ea27497f35a6c679b071ec5fd3563253bbd3ce Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 11:44:35 -0700 Subject: [PATCH 071/106] Update mc2.CA987654-duoCodeAR.schema.json --- json_schemas/mc2.CA987654-duoCodeAR.schema.json | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/json_schemas/mc2.CA987654-duoCodeAR.schema.json b/json_schemas/mc2.CA987654-duoCodeAR.schema.json index 6e6b6eed..d84a494e 100644 --- a/json_schemas/mc2.CA987654-duoCodeAR.schema.json +++ b/json_schemas/mc2.CA987654-duoCodeAR.schema.json @@ -22,6 +22,9 @@ "properties": { "_accessRequirementIds": { "type": "array", + "items": { + "type": "string" + }, "contains": { "const": 0 } @@ -47,6 +50,9 @@ "properties": { "_accessRequirementIds": { "type": "array", + "items": { + "type": "string" + }, "contains": { "const": 0 } From 8d7f00ac5a5fbfa80150b07e4c215c38e4288fc1 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 11:50:49 -0700 Subject: [PATCH 072/106] Rename test schema --- ...4-duoCodeAR.schema.json => mc2.CA987654_duoCodeAR.schema.json} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename json_schemas/{mc2.CA987654-duoCodeAR.schema.json => mc2.CA987654_duoCodeAR.schema.json} (100%) diff --git a/json_schemas/mc2.CA987654-duoCodeAR.schema.json b/json_schemas/mc2.CA987654_duoCodeAR.schema.json similarity index 100% rename from json_schemas/mc2.CA987654-duoCodeAR.schema.json rename to json_schemas/mc2.CA987654_duoCodeAR.schema.json From 9690d1779945faab411776d1f2e47848ba099180 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 12:08:10 -0700 Subject: [PATCH 073/106] Update mc2.CA987654_duoCodeAR.schema.json --- json_schemas/mc2.CA987654_duoCodeAR.schema.json | 6 ------ 1 file changed, 6 deletions(-) diff --git a/json_schemas/mc2.CA987654_duoCodeAR.schema.json b/json_schemas/mc2.CA987654_duoCodeAR.schema.json index d84a494e..6e6b6eed 100644 --- a/json_schemas/mc2.CA987654_duoCodeAR.schema.json +++ b/json_schemas/mc2.CA987654_duoCodeAR.schema.json @@ -22,9 +22,6 @@ "properties": { "_accessRequirementIds": { "type": "array", - "items": { - "type": "string" - }, "contains": { "const": 0 } @@ -50,9 +47,6 @@ "properties": { "_accessRequirementIds": { "type": "array", - "items": { - "type": "string" - }, "contains": { "const": 0 } From 5e430932d3741f3e4dccd182aed0abd8df3b2544 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 12:12:36 -0700 Subject: [PATCH 074/106] Rename test schema --- ...4_duoCodeAR.schema.json => mc2.CA987654-duoCodeAR.schema.json} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename json_schemas/{mc2.CA987654_duoCodeAR.schema.json => mc2.CA987654-duoCodeAR.schema.json} (100%) diff --git a/json_schemas/mc2.CA987654_duoCodeAR.schema.json b/json_schemas/mc2.CA987654-duoCodeAR.schema.json similarity index 100% rename from json_schemas/mc2.CA987654_duoCodeAR.schema.json rename to json_schemas/mc2.CA987654-duoCodeAR.schema.json From 26726631f657898516d7575f3b37d641584c78ee Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 13:03:16 -0700 Subject: [PATCH 075/106] Rename test schema --- ...-duoCodeAR.schema.json => mc2.CA987654duoCodeAR.schema.json} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename json_schemas/{mc2.CA987654-duoCodeAR.schema.json => mc2.CA987654duoCodeAR.schema.json} (94%) diff --git a/json_schemas/mc2.CA987654-duoCodeAR.schema.json b/json_schemas/mc2.CA987654duoCodeAR.schema.json similarity index 94% rename from json_schemas/mc2.CA987654-duoCodeAR.schema.json rename to json_schemas/mc2.CA987654duoCodeAR.schema.json index 6e6b6eed..133fc623 100644 --- a/json_schemas/mc2.CA987654-duoCodeAR.schema.json +++ b/json_schemas/mc2.CA987654duoCodeAR.schema.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-07/schema", "title": "MC2 Example CA987654 AR-DUO schema", - "$id": "MC2-CA987654-AR-DUO.1.0", + "$id": "Multi Consortia Coordinating Center-CA987654-duoCodeAR-11.0.0", "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", "allOf": [ { From 30a92db9c6dea8eb322ba099d7f50bcb0e1ddc07 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 13:04:58 -0700 Subject: [PATCH 076/106] Update mc2.CA987654duoCodeAR.schema.json --- json_schemas/mc2.CA987654duoCodeAR.schema.json | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/json_schemas/mc2.CA987654duoCodeAR.schema.json b/json_schemas/mc2.CA987654duoCodeAR.schema.json index 133fc623..2889b421 100644 --- a/json_schemas/mc2.CA987654duoCodeAR.schema.json +++ b/json_schemas/mc2.CA987654duoCodeAR.schema.json @@ -22,6 +22,9 @@ "properties": { "_accessRequirementIds": { "type": "array", + "items": { + "type": "string" + }, "contains": { "const": 0 } @@ -47,6 +50,9 @@ "properties": { "_accessRequirementIds": { "type": "array", + "items": { + "type": "string" + }, "contains": { "const": 0 } From a3a013e267aeca86568533022cad38fa2e3e6b40 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 13:21:41 -0700 Subject: [PATCH 077/106] Update mc2.CA987654duoCodeAR.schema.json --- json_schemas/mc2.CA987654duoCodeAR.schema.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schemas/mc2.CA987654duoCodeAR.schema.json b/json_schemas/mc2.CA987654duoCodeAR.schema.json index 2889b421..b8cc7a8e 100644 --- a/json_schemas/mc2.CA987654duoCodeAR.schema.json +++ b/json_schemas/mc2.CA987654duoCodeAR.schema.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-07/schema", "title": "MC2 Example CA987654 AR-DUO schema", - "$id": "Multi Consortia Coordinating Center-CA987654-duoCodeAR-11.0.0", + "$id": "Multi Consortia Coordinating Center-CA987654-duoCodeAR-10.0.0", "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", "allOf": [ { From 36d5235a946b4073cf2acf9ff4b151dd1a0b65da Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 13:22:29 -0700 Subject: [PATCH 078/106] Create mc2.DatasetView.schema.json --- json_schemas/mc2.DatasetView.schema.json | 966 +++++++++++++++++++++++ 1 file changed, 966 insertions(+) create mode 100644 json_schemas/mc2.DatasetView.schema.json diff --git a/json_schemas/mc2.DatasetView.schema.json b/json_schemas/mc2.DatasetView.schema.json new file mode 100644 index 00000000..7088d3b2 --- /dev/null +++ b/json_schemas/mc2.DatasetView.schema.json @@ -0,0 +1,966 @@ +{ + "$schema": "http://json-schema.org/draft-07/schema#", + "$id": "http://example.com/DatasetView_validation", + "title": "DatasetView_validation", + "type": "object", + "properties": { + "Study Key": { + "type": "string", + "title": "StudyKey", + "description": "The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components." + }, + "PublicationView Key": { + "type": "string", + "title": "PublicationViewKey", + "description": "Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection." + }, + "GrantView Key": { + "type": "string", + "title": "GrantViewKey", + "description": "Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection." + }, + "Dataset File Formats": { + "type": "array", + "items": { + "enum": [ + "PNG", + "MTX", + "VCF", + "TIFF", + "PKL", + "MGF", + "SGI", + "HTML", + "mzXML", + "WIG", + "GCT", + "mzIdentML", + "ROUT", + "BPM", + "MAP", + "MAT", + "CDS", + "H5AD", + "MATLAB script", + "DS_Store", + "SRA", + "BAM", + "RPROJ", + "maf", + "xls", + "GCG", + "IDAT", + "unspecified", + "cel", + "BAI", + "SF", + "BIGWIG", + "JPG", + "GTF", + "PZFX", + "cloupe", + "rcc", + "FREQ", + "COOL", + "Pending Annotation", + "JSON", + "CLS", + "PDF", + "bed12", + "SCN", + "FASTQ", + "GCTx", + "LIF", + "HDF", + "DB", + "MSF", + "pptx", + "Python Script", + "TSV", + "FASTA", + "XML", + "CHP", + "DAE", + "RAW", + "BED", + "docx", + "bedgraph", + "FIG", + "TAR Format", + "HDF5", + "R File Format", + "FCS", + "GFF3", + "TXT", + "STAT", + "H5", + "AVI", + "RTF", + "TDF", + "RDS", + "GZIP Format", + "CSV", + "xlsx", + "ZIP", + "SVS", + "" + ] + } + }, + "Dataset Design": { + "type": "string", + "title": "DatasetDesign", + "description": "The overall design of the dataset.", + "maxLength": 500 + }, + "Dataset Name": { + "not": { + "type": "null" + }, + "type": "string", + "title": "DatasetName", + "description": "Name of the dataset.", + "maxLength": 250 + }, + "Data Use Codes": { + "type": "array", + "title": "DataUseCodes", + "description": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes", + "items": { + "enum": [ + "US", + "NPU", + "PS", + "RS", + "CC", + "POA", + "PUB", + "TS", + "NPUNCU", + "DUM", + "NMDS", + "DS", + "GSO", + "IRB", + "IS", + "RTN", + "NPOA", + "HMB", + "COL", + "NCU", + "GS", + "MOR", + "NRES", + "GRU", + "" + ] + } + }, + "Dataset Alias": { + "type": "string", + "title": "DatasetAlias", + "description": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345 or the dataset Synapse Id", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Url": { + "type": "string", + "title": "DatasetUrl", + "description": "The url of where the dataset is stored.", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Assay": { + "type": "array", + "title": "DatasetAssay", + "description": "The assay(s) the dataset is representative of.", + "items": { + "enum": [ + "3C-qPCR", + "Fluorescence Recovery After Photo-Bleaching", + "TCR Sequencing", + "Organoid", + "Cell Viability Assay", + "DNA Sequencing", + "Time Lapse Microscopy", + "Thin-Layer Chromatography", + "Energy-Dispersive X-Ray Spectroscopy", + "Cross-Linking Mass Spectrometry", + "Global Run-On Sequencing", + "ImmunoFISH", + "RT-qPCR", + "Data Integration", + "FAIRE-Seq", + "Immunotherapy", + "In Vitro Model", + "Not Applicable", + "Immunohistochemistry Staining Method", + "Computational Modeling", + "Metabolite Profiling Assay", + "Stimulated Raman Scattering", + "Cryo-Electron Microscopy", + "Monolayer Stress Microscopy", + "Ultrasound Imaging", + "Stimulated Emission Depletion Microscopy", + "Single Molecule Forster Resonance Energy Transfer", + "Questionnaire", + "Sirius Red Staining", + "Micropipette Aspiration", + "Confocal Microscopy", + "DBiT-Seq", + "qPCR", + "Dideoxy Chain Termination DNA Sequencing", + "unspecified", + "Positron Emission Tomography", + "Single Cell Gel Electrophoresis", + "Statistical Modeling", + "Targeted Therapy Agent", + "Gene Ontology Enrichment Analysis", + "RIP", + "Cytometric Bead Array Assay", + "Stochastic Optical Reconstruction Microscopy", + "In Vivo Bioluminescence", + "Apoptosis Assay", + "Nanowire", + "Dynamic Light Scattering", + "Synaptophysin Staining Method", + "Multiscale Light Sheet Microscopy", + "Chimeric Antigen Receptor T-Cell Therapy", + "MEMA Cell Growth Assay", + "Chemotaxis Assay", + "Patient Derived Xenograft", + "Tiling Array", + "Phagocytosis Assay", + "Southern Blotting", + "Tissue Engineering", + "PET-CT", + "Pending Annotation", + "Brillouin Microscopy", + "Multiplexed Ion Beam Imaging", + "Co-Immunoprecipitation", + "Clonality Analysis", + "Bio-Layer Interferometry", + "Shotgun Mass Spectrometry", + "scNT-Seq", + "Micropipette Adhesion Assay", + "Super-Resolution Microscopy", + "Cell Proliferation Assay", + "Single-Cell BCR Sequencing", + "Collision-Induced Dissociation", + "TRAP Staining", + "Proteomics Assay", + "Direct Long-Read RNA Sequencing", + "Lattice Light Sheet Microscopy", + "X-Ray Crystallography", + "ChIA-PET", + "Electron Microscopy", + "HiChIP", + "Cytochemical Stain", + "Fluorescent In Situ Sequencing", + "Xenograft", + "ChIP-PCR", + "smRNA-seq", + "Desorption Electrospray Ionization", + "RNAi Screen", + "Single Nucleus RNA-Sequencing", + "Global Chromatin Profiling", + "Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture", + "Fluorescence Activated Cell Sorting", + "mRNA Sequencing", + "CASFISH", + "Alcian Blue Staining Method", + "Dark Field Microscopy", + "Western Blotting", + "TUNEL assay", + "Tandem Mass Tagging", + "Second-Harmonic Imaging Microscopy", + "Inductively-Coupled Plasma Mass Spectrometry", + "Dye Endocytosis Assay", + "Brightfield Microscopy", + "Gene Set Enrichment Analysis", + "Enzyme-Linked Immunospot Assay", + "Single-Molecule Tracking", + "Affinity Purification Mass Spectrometry", + "Light Sheet Microscopy", + "Gene Silencing", + "Ribo-Seq", + "5C", + "Endotoxin Assay", + "MNase-Seq", + "3' RNA-seq", + "smFISH", + "Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging", + "Precision Run-On Sequencing", + "Tuba-Seq", + "Electron Diffraction", + "Wound-Healing Assay", + "Multiplexed Immunofluorescence", + "Single Cell RNA-Sequencing", + "Synthesis", + "Mint-ChIP", + "Graphite Furnace Atomic Absorption Spectrometry", + "Optical Coherence Tomography", + "Reverse Phase Protein Array", + "Size Exclusion Chromatography", + "seqFISH", + "ChIP-qPCR assay", + "Flow Cytometry", + "Small-Angle X-ray Scattering", + "Autoradiography", + "Optogenetic Assay", + "FISH", + "Scratch Assay", + "Optical Tweezers", + "10x Multiome", + "Nanopatterning", + "DNA Methylation Array", + "DRIP-seq", + "Single-Molecule Localization Microscopy", + "Interference Reflection Microscopy", + "Traction Force Microscopy", + "Whole Genome Sequencing", + "Total Internal Reflection Fluorescence Microscopy", + "Next Generation Sequencing", + "Photoacoustic Imaging", + "ELISA", + "ATP Bioluminescence Assay", + "Transcription profiling by NanoString", + "Droplet Digital PCR", + "Cross-Linking Immunoprecipitation High-throughput Sequencing", + "Multiparametric Magnetic Resonance Imaging", + "CUT&Tag-Sequencing", + "High Throughput Screening", + "Mammosphere Formation Assay", + "Immunoprecipitation", + "Optical Stretcher", + "Multiphoton Microscopy", + "QFISH", + "MALDI-TOF Mass Spectrometry", + "High-Content Screen", + "Artificial Intelligence", + "Cell Fractionation", + "Partial Wave Spectroscopy", + "Targeted Error Correction Sequencing", + "Microfluidics", + "Clinical Study", + "Whole Exome Sequencing", + "Barcode-Seq", + "Image Cytometry", + "Cell Adhesion Assay", + "Surface Plasmon Resonance", + "Hydrogels", + "Label-free Protein Quantification by LC/MS", + "Cell Culture", + "Gelatin Zymography", + "Structural Variant Analysis", + "RNA Sequencing", + "Viral Transduction", + "3D Cell Culture", + "Bisulfite Sequencing", + "TAB-Seq", + "Reporter Gene Assay", + "Angiogenesis Assay", + "Mass Spectrometry", + "CUT&RUN", + "Amplicon Sequencing", + "Magnetic Resonance Imaging", + "Picrosirius Staining", + "Targeted Genome Sequencing", + "Immunoassay", + "RIP-Seq", + "Spectroscopy", + "Raman Spectroscopy", + "4C", + "Point Accumulation for Imaging in Nanoscale Topography", + "Von Kossa Staining", + "Differential Scanning Fluorimetry", + "Murine Model", + "In Vitro Translation", + "Reverse-Phase High-Performance liquid Chromatography", + "Cell-free Circulating Tumor DNA Assay", + "Nano-hmC-Seal", + "In Vitro Cell Killing Assay", + "PlateSeq", + "Atomic Force Microscopy", + "Rheometry", + "Tissue Microarray", + "Whole Genome Bisulfite Sequencing", + "Microcontact Printing", + "Plasmid Construction", + "Circular Dichroism Spectroscopy", + "Transmission Electron Microscopy", + "Low-Vacuum Scanning Electron Microscopy", + "Paraquat Survival Assay", + "Magnetic Tweezers", + "Drop-Seq", + "MULTI-Seq", + "Computed Tomography", + "Electrophoretic Mobility Shift Assay", + "Co-Immunoprecipitation Mass Spectrometry", + "Magnetically Activated Cell Sorting", + "CellTiter-Glo Luminescent Cell Viability Assay", + "Widefield Fluorescence Microscopy", + "Liquid Chromatography Mass Spectrometry", + "Mathematical Modeling", + "Genotyping", + "Ribosomal P Protein Antibody Measurement", + "Scanning Electron Microscopy", + "SDS-PAGE", + "HPLC-MSMS", + "Fluorescence Correlation Spectroscopy", + "Allograft", + "Optical Mapping", + "Visium Spatial Gene Expression", + "Karyotyping", + "Methylation-Specific PCR", + "Deep Mutational Scanning", + "Fluorescent Cell Barcoding", + "Hydrophilic Interaction Chromatography", + "Single Nucleotide Polymorphism Array", + "In Situ Hybridization", + "3D Bioprinting", + "Efferocytosis Assay", + "Luminescent Cell Viability Assay", + "Differential Interference Contrast Microscopy", + "Hematoxylin and Eosin Staining Method", + "Proximity Ligation Assay", + "Fluorescent Antibody Procedure", + "Fourier-Transform Infrared Spectroscopy", + "TIRF Microscopy", + "Forster Resonance Energy Transfer", + "UPLC-MSMS", + "Immobilized Metal Affinity Chromatography", + "Single-Cell Barcode Chip", + "ATAC-Seq", + "Cell-spreading Assay", + "CRISPR", + "siRNA", + "Metastatic Colonization Assay", + "cDNA Array", + "RAS Protein Family Activation Assay", + "Cyclic Immunofluorescence", + "Cerenkov Luminescence Imaging", + "Immunocytochemistry", + "Atomic Absorption Spectroscopy", + "Quantitative Point Accumulation for Imaging in Nanoscale Topography", + "Co-culture Assay", + "Bioluminescence Imaging", + "CLIP-qPCR", + "Phylogenetic Analysis", + "Virus Plaque Assay", + "Single Cell DNA Sequencing", + "3C", + "Migration Assay", + "In-Cell Western Assay", + "Fluorescence Lifetime Imaging Microscopy", + "Macrophage Polarization Assay", + "Knife-Edge Scanning Microscopy", + "Permeability Assay", + "Multi-Angle Light Scattering", + "L1000 mRNA Profiling Assay", + "Molecular Simulations", + "Reduced Representation Bisulfite Sequencing", + "Field-Emission Scanning Electron Microscopy", + "Bioelectrochemical Analysis", + "Optical Emission Spectroscopy", + "Confocal Reflectance Quantitative Phase Microscopy", + "imaging", + "MeRIP-Seq", + "Single Cell ATAC-Seq", + "10-cell RNA Sequencing", + "Trichrome Staining Method", + "scCGI-seq", + "Scanning Angle Interference Microscopy", + "Focused Ion Beam Scanning Electron Microscopy", + "Electron Paramagnetic Resonance Spectroscopy", + "Dynamic Contrast-Enhanced Magnetic Resonance Imaging", + "Transwell Assay", + "16S Ribosomal Gene Sequencing Assay", + "Modeling", + "In Vitro Selection", + "ChIP-Seq", + "Target Engagement Assay", + "Fluorescence Microscopy", + "Nested PCR", + "DNase-Seq", + "Epidemiological Method", + "CITE-seq", + "HL-Chip", + "Nuclear Magnetic Resonance", + "Single-Cell TCR Sequencing", + "Microscopy", + "Pull-Down Assay", + "Hi-C", + "Dynamic Force Spectroscopy", + "Multiplexed Error-Robust Fluorescence In Situ Hybridization", + "Invasion Assay", + "Cytokine Expression Profile", + "DNA Gene-Expression Microarray", + "Diffusion Weighted Imaging", + "Fluorescence Imaging", + "Gas Chromatography Mass Spectrometry", + "Nanopore Sequencing", + "Multi-Isotope Mass Spectrometry", + "MicroRNA Sequencing", + "X-Ray Micro-Computed Tomography", + "NanoString Digital Spatial Profiling", + "Suspended Microchannel Resonator", + "Antitumor Drug Screening Assay", + "RT-PCR", + "Quantitative Multiplex Immunofluorescence", + "Cryo-Electron Tomography", + "Cytotoxicity Assay", + "X-Ray Diffraction", + "Immunofluorescent Staining Method", + "Atomic Absorption Spectrophotometry", + "Imaging Mass Cytometry", + "Multiplexed Immunohistochemistry", + "Single Cell Cytokine Detection Chip Assay", + "MeDIP", + "snRNA-seq", + "Survival Analysis", + "Magnetic Twisting Cytometry", + "Tandem Mass Spectrometry", + "Isothermal Titration Calorimetry", + "Mass Cytometry", + "Soft Agar Assay", + "MicroRNA Expression Array", + "Nm-seq", + "Liquid Chromatography/Tandem Mass Spectrometry", + "Deep Learning", + "Chemiluminescent Assay", + "Luciferase Reporter Assay", + "Dual-Luciferase Reporter Assay", + "Thermal Shift Assay", + "Time-Correlated Single Photon Counting", + "Photolithography", + "eCLIP-Seq", + "Comparative Genomic Hybridization", + "Surveyor Nuclease Assay", + "UV Photocrosslinking", + "Micro-computed Tomography", + "Colorimetric Cell Viability Assay", + "Intravital Microscopy", + "Enzyme Activity Assay", + "Methyl Binding Domain Sequencing", + "Cell Cycle Assay", + "scSLAM-seq", + "Vibrational Spectroscopy", + "shRNA", + "Bicinchoninic Acid Assay", + "Computational Tool", + "Fourier Transform Ion Cyclotron Resonance Mass Spectrometry", + "Electrospray Ionization Time-of-Flight Mass Spectrometry", + "PCR", + "Targeted Transcriptome Sequencing", + "Binding Assay", + "Synthetic Genetic Array" + ] + } + }, + "Dataset Description": { + "type": "string", + "title": "DatasetDescription", + "description": "Text description of the dataset.", + "maxLength": 500 + }, + "DatasetView_id": { + "type": "string", + "title": "DatasetViewid", + "description": "A unique primary key that enables record updates using schematic", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Species": { + "type": "array", + "title": "DatasetSpecies", + "description": "The species the data was collected on.", + "items": { + "enum": [ + "Boar", + "Mouse", + "Sheep", + "Asian Elephant", + "Rabbit", + "Multispecies", + "Cow", + "Human", + "Cat", + "Human Cell Line", + "Guinea Pig", + "unspecified", + "Opossum", + "Armadillo", + "Fruit Fly", + "Dog", + "Horse", + "Trichoplax adhaerens", + "Chicken", + "Escherichia coli", + "Human Patient", + "Rat", + "unknown", + "Yeast", + "Rhesus monkey", + "Worm", + "Zebrafish", + "African Bush Elephant" + ] + } + }, + "Dataset Tumor Type": { + "type": "array", + "title": "DatasetTumorType", + "description": "The tumor type(s), if applicable, of the data collected on", + "items": { + "enum": [ + "Angiosarcoma", + "Glioblastoma", + "Ovarian Carcinoma", + "Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features", + "Precursor B-cell lymphoblastic leukemia", + "Primary Central Nervous System Lymphoma", + "Cutaneous T Cell Lymphoma", + "Giant Cell Tumor", + "Colorectal Adenoma", + "Neuroepithelial Neoplasm", + "Prostate Adenocarcinoma", + "Fibrolamellar Carcinoma", + "Rosette-Forming Glioneuronal Tumor", + "Non-Functioning Pituitary Gland Adenoma", + "Adenocarcinoma", + "Biliary Tract Carcinoma", + "Acinar Cell Carcinoma", + "Luminal A Breast Carcinoma", + "Malignant Pancreatic Neoplasm", + "Retinoblastoma", + "Gastric Adenocarcinoma", + "Lymphoma", + "B-Cell Non-Hodgkin Lymphoma", + "Pancreatic Neoplasm", + "Plexiform Neurofibroma", + "Mycosis Fungoides", + "Pituitary Gland Adenoma", + "Not Applicable", + "Cervical Neoplasm", + "Combined Hepatocellular Carcinoma and Cholangiocarcinoma", + "Bone Neoplasm", + "Thyroid Gland Carcinoma", + "Ductal Breast Carcinoma In Situ", + "Malignant Skin Neoplasm", + "Bladder Neoplasm", + "Carcinoma", + "Hodgkin Lymphoma", + "Leukemia", + "Colorectal Neoplasm", + "Ewing Sarcoma", + "Urothelial Carcinoma", + "Clear Cell Renal Cell Carcinoma", + "Malignant Peripheral Nerve Sheath Tumor", + "Basal-Like Breast Carcinoma", + "Pilocytic Astrocytoma", + "Craniopharyngioma", + "Basal Cell Neoplasm", + "Triple-Negative Breast Carcinoma", + "Ovarian Neoplasm", + "Rectal Adenocarcinoma", + "Uveal Neoplasm", + "Acute Monocytic Leukemia", + "Skin Carcinoma", + "Gastroesophageal Junction Adenocarcinoma", + "Multiple Myeloma", + "Oral Cavity Neoplasm", + "Gastrointestinal Stromal Neoplasm", + "Mantle Cell Lymphoma", + "Marginal Zone Lymphoma", + "Penile Carcinoma", + "T-Cell Lymphoma", + "Synovial Sarcoma", + "Malignant Neoplasm", + "Central Nervous System Cavernous Hemangioma", + "Fibrosarcoma", + "Prostate Carcinoma", + "Cerebellar Neoplasm", + "Ovarian Adenosarcoma", + "B Acute Lymphoblastic Leukemia", + "Head and Neck Neoplasm", + "Chronic Myeloid Leukemia", + "Diffuse Large B-Cell Lymphoma", + "Leiomyoma", + "Acute Myeloid Leukemia", + "Esophageal Adenocarcinoma", + "Meningioma", + "Malignant Genitourinary System Neoplasm", + "Myeloid Leukemia", + "Histiocytic Sarcoma", + "Oral Cavity Squamous Cell Carcinoma", + "Bladder Carcinoma", + "Not-Applicable", + "Gallbladder Carcinoma", + "Non-Hodgkin Lymphoma", + "Osteosarcoma", + "Myeloproliferative Neoplasm", + "Pancreatic Ductal Adenocarcinoma", + "Breast Carcinoma", + "Esophageal Carcinoma", + "Atypical Teratoid/Rhabdoid Tumor", + "Pan-cancer", + "Barrett Esophagus", + "Breast Neoplasm", + "Nasopharyngeal Carcinoma", + "Pending Annotation", + "Sinonasal Squamous Cell Carcinoma", + "Colorectal Adenocarcinoma", + "Choriocarcinoma", + "Carcinoma In Situ", + "Pancreatic Neuroendocrine Carcinoma", + "Endometrial Neoplasm", + "Ovarian Serous Adenocarcinoma", + "Pancreatic Adenocarcinoma", + "Lung Squamous Cell Carcinoma", + "Lung Non-Small Cell Carcinoma", + "Lymphoid Leukemia", + "Plexiform Schwannoma", + "Liver and Intrahepatic Bile Duct Neoplasm", + "Malignant Peritoneal Neoplasm", + "Astrocytoma", + "Lung Carcinoma", + "Schwannoma", + "Fibroepithelial Polyp", + "Intestinal Neoplasm", + "Testicular Embryonal Carcinoma", + "Kaposi Sarcoma", + "Follicular Lymphoma", + "Rhabdomyosarcoma", + "Pheochromocytoma", + "Hepatocellular Carcinoma", + "Esophageal Squamous Cell Carcinoma", + "Gastric Neoplasm", + "Cervical Carcinoma", + "Serous Tubal Intraepithelial Carcinoma", + "T Acute Lymphoblastic Leukemia", + "Cholangiocarcinoma", + "Colon Adenocarcinoma", + "Uterine Adenosarcoma", + "Soft Tissue Sarcoma", + "Central Nervous System Neoplasm", + "Gastric Carcinoma", + "Lung Adenocarcinoma", + "Colon Carcinoma", + "Myoepithelioma", + "Medulloblastoma", + "Cutaneous Melanoma", + "Invasive Ductal Breast Carcinoma", + "Prostate Neoplasm", + "Acute Lymphoblastic Leukemia", + "Neuroendocrine Neoplasm", + "Lung Small Cell Carcinoma", + "Uveal Melanoma", + "Brain Neoplasm", + "Skin Neoplasm", + "Malignant Digestive System Neoplasm", + "Malignant Glioma", + "Dysembryoplastic Neuroepithelial Neoplasm", + "Castration-Resistant Prostate Carcinoma", + "Colorectal Carcinoma", + "Liver and Intrahepatic Bile Duct Carcinoma", + "Glioma", + "Neurofibroma", + "Primary Myelofibrosis", + "Plasmablastic Lymphoma", + "Head and Neck Squamous Cell Carcinoma", + "Neuroblastoma", + "Lung Neoplasm", + "Melanoma", + "Thyroid Gland Anaplastic Carcinoma", + "Cervical Small Cell Carcinoma", + "Ependymoma", + "Sarcoma", + "Gastroesophageal Adenocarcinoma", + "Acute Promyelocytic Leukemia", + "Pancreatic Carcinoma", + "Low Grade Glioma", + "Mesothelioma", + "High Grade Ovarian Serous Adenocarcinoma", + "Malignant Ovarian Neoplasm", + "Head and Neck Carcinoma", + "Cellular Schwannoma", + "Oropharyngeal Neoplasm", + "Teratoma", + "Breast Adenocarcinoma", + "Chondroblastoma", + "Intrahepatic Cholangiocarcinoma", + "Chronic Lymphocytic Leukemia", + "Vascular Neoplasm", + "Endometrial Carcinoma", + "Myeloid Neoplasm", + "Extraventricular Neurocytoma", + "Salivary Gland Adenoid Cystic Carcinoma", + "Plasmacytoma", + "Squamous Cell Carcinoma", + "Renal Cell Carcinoma", + "Malignant Brain Neoplasm", + "" + ] + } + }, + "Dataset Tissue": { + "type": "array", + "title": "DatasetTissue", + "description": "Tissue type(s) associated with the dataset", + "items": { + "enum": [ + "Cervix Uteri", + "Vascular Endothelium", + "Thymus", + "Tongue", + "Hippocampus", + "Stomach", + "Frontal Lobe", + "Colon", + "Pleura", + "Pelvic Lymph Nodes", + "Heart", + "Pharynx", + "Intestine", + "Connective and Soft Tissue", + "Lymph Nodes of Axilla or Arm", + "Gastroesophageal Junction", + "Fallopian Tube", + "Vagina", + "Not Applicable", + "Liver", + "Duodenum", + "Epithelium", + "Ligament", + "Joint", + "Pituitary Gland", + "Lymph Nodes of Inguinal Region or Leg", + "Heart Muscle", + "Pancreas", + "Omentum", + "Ovary", + "Lymph", + "Lung", + "Reproductive System", + "Placenta", + "Adipose Tissue", + "Mucosa", + "Cancer-Associated Fibroblast", + "Embryo", + "Intrathoracic Lymph Nodes", + "Alveolus", + "unspecified", + "Meninges", + "Hematopoietic System", + "Small Intestine", + "Olfactory Mucosa", + "Spinal Cord", + "Blood", + "Mesenchyme", + "Ascending Colon", + "Ear", + "Bladder", + "Cartilage", + "Rectum", + "Vertebra", + "Head and Neck", + "Endometrium", + "Gastrointestinal Tract", + "Choroid", + "Caecum", + "Pending Annotation", + "Embryonic Heart", + "Mammary Gland", + "Adrenal Gland", + "Lymphatic System", + "Intra-Abdominal Lymph Nodes", + "Abdominal Esophagus", + "Respiratory System", + "Larynx", + "Breast", + "Bone", + "Thyroid Gland", + "Bile Duct", + "Muscle", + "Peripheral Blood Mononuclear Cell", + "Trachea", + "Synovial Membrane", + "Tonsil", + "Main Bronchus", + "Testis", + "Artery", + "Esophagus", + "Brain", + "Genitourinary", + "Prostate Gland", + "Salivary Gland", + "Lymph Node", + "Foreskin", + "Sinonasal Tract", + "Oral Mucosa", + "Bone Marrow", + "Lymphoid Tissue", + "Cardia", + "Uterus", + "Kidney", + "Vein", + "Oral Cavity", + "Peripheral Nerves", + "Umbilical Cord", + "Nervous System", + "Blood Vessel", + "Skin", + "Eye", + "Periodontal Ligament", + "Endothelium", + "Hair Follicle", + "Aorta", + "Endocervix", + "Spleen", + "Tendon", + "Cornea", + "Peritoneum", + "Gonad", + "Nasal Cavity", + "Sclera", + "" + ] + } + }, + "Component": { + "type": "string", + "title": "Component", + "description": "Type of metadata associated with this entity.", + "not": { + "type": "null" + }, + "minLength": 1 + }, + "Dataset Doi":{ + "type": "string", + "title": "DatasetDoi", + "description": "The Digital Object Identifier (DOI) associated with the dataset.", + "not": { + "type": "null" + }, + "minLength": 1 + } + }, + "required": [ + "Dataset Name", + "Dataset Alias", + "Dataset Url", + "Dataset Assay", + "DatasetView_id", + "Dataset Species", + "Component", + "Dataset Doi" + ] +} \ No newline at end of file From f5bc2a6b4456b7a26878dced4635cce5efd0233f Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 13:26:25 -0700 Subject: [PATCH 079/106] Update mc2.duoCodeAR_TEMPLATE.schema.json Add item typing to template JSON schema --- json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json index b0d1ad28..1525ae8e 100644 --- a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json +++ b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json @@ -22,6 +22,9 @@ "properties": { "_accessRequirementIds": { "type": "array", + "items": { + "type": "string" + }, "contains": { "const": 0 } @@ -47,6 +50,9 @@ "properties": { "_accessRequirementIds": { "type": "array", + "items": { + "type": "string" + }, "contains": { "const": 0 } From fbf9f2b559c4d1cccb875069445051315c0dac27 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 13:28:45 -0700 Subject: [PATCH 080/106] Remove example schemas from PR --- .../mc2.CA987654duoCodeAR.schema.json | 64 -- json_schemas/mc2.DatasetView.schema.json | 966 ------------------ 2 files changed, 1030 deletions(-) delete mode 100644 json_schemas/mc2.CA987654duoCodeAR.schema.json delete mode 100644 json_schemas/mc2.DatasetView.schema.json diff --git a/json_schemas/mc2.CA987654duoCodeAR.schema.json b/json_schemas/mc2.CA987654duoCodeAR.schema.json deleted file mode 100644 index b8cc7a8e..00000000 --- a/json_schemas/mc2.CA987654duoCodeAR.schema.json +++ /dev/null @@ -1,64 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema", - "title": "MC2 Example CA987654 AR-DUO schema", - "$id": "Multi Consortia Coordinating Center-CA987654-duoCodeAR-10.0.0", - "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", - "allOf": [ - { - "if": { - "properties": { - "duoCodes": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": "RTN" - } - } - } - }, - "then": { - "properties": { - "_accessRequirementIds": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": 0 - } - } - } - } - }, - { - "if": { - "properties": { - "duoCodes": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": "NPU" - } - } - } - }, - "then": { - "properties": { - "_accessRequirementIds": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": 0 - } - } - } - } - } - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.DatasetView.schema.json b/json_schemas/mc2.DatasetView.schema.json deleted file mode 100644 index 7088d3b2..00000000 --- a/json_schemas/mc2.DatasetView.schema.json +++ /dev/null @@ -1,966 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/DatasetView_validation", - "title": "DatasetView_validation", - "type": "object", - "properties": { - "Study Key": { - "type": "string", - "title": "StudyKey", - "description": "The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components." - }, - "PublicationView Key": { - "type": "string", - "title": "PublicationViewKey", - "description": "Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection." - }, - "GrantView Key": { - "type": "string", - "title": "GrantViewKey", - "description": "Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection." - }, - "Dataset File Formats": { - "type": "array", - "items": { - "enum": [ - "PNG", - "MTX", - "VCF", - "TIFF", - "PKL", - "MGF", - "SGI", - "HTML", - "mzXML", - "WIG", - "GCT", - "mzIdentML", - "ROUT", - "BPM", - "MAP", - "MAT", - "CDS", - "H5AD", - "MATLAB script", - "DS_Store", - "SRA", - "BAM", - "RPROJ", - "maf", - "xls", - "GCG", - "IDAT", - "unspecified", - "cel", - "BAI", - "SF", - "BIGWIG", - "JPG", - "GTF", - "PZFX", - "cloupe", - "rcc", - "FREQ", - "COOL", - "Pending Annotation", - "JSON", - "CLS", - "PDF", - "bed12", - "SCN", - "FASTQ", - "GCTx", - "LIF", - "HDF", - "DB", - "MSF", - "pptx", - "Python Script", - "TSV", - "FASTA", - "XML", - "CHP", - "DAE", - "RAW", - "BED", - "docx", - "bedgraph", - "FIG", - "TAR Format", - "HDF5", - "R File Format", - "FCS", - "GFF3", - "TXT", - "STAT", - "H5", - "AVI", - "RTF", - "TDF", - "RDS", - "GZIP Format", - "CSV", - "xlsx", - "ZIP", - "SVS", - "" - ] - } - }, - "Dataset Design": { - "type": "string", - "title": "DatasetDesign", - "description": "The overall design of the dataset.", - "maxLength": 500 - }, - "Dataset Name": { - "not": { - "type": "null" - }, - "type": "string", - "title": "DatasetName", - "description": "Name of the dataset.", - "maxLength": 250 - }, - "Data Use Codes": { - "type": "array", - "title": "DataUseCodes", - "description": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes", - "items": { - "enum": [ - "US", - "NPU", - "PS", - "RS", - "CC", - "POA", - "PUB", - "TS", - "NPUNCU", - "DUM", - "NMDS", - "DS", - "GSO", - "IRB", - "IS", - "RTN", - "NPOA", - "HMB", - "COL", - "NCU", - "GS", - "MOR", - "NRES", - "GRU", - "" - ] - } - }, - "Dataset Alias": { - "type": "string", - "title": "DatasetAlias", - "description": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345 or the dataset Synapse Id", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Url": { - "type": "string", - "title": "DatasetUrl", - "description": "The url of where the dataset is stored.", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Assay": { - "type": "array", - "title": "DatasetAssay", - "description": "The assay(s) the dataset is representative of.", - "items": { - "enum": [ - "3C-qPCR", - "Fluorescence Recovery After Photo-Bleaching", - "TCR Sequencing", - "Organoid", - "Cell Viability Assay", - "DNA Sequencing", - "Time Lapse Microscopy", - "Thin-Layer Chromatography", - "Energy-Dispersive X-Ray Spectroscopy", - "Cross-Linking Mass Spectrometry", - "Global Run-On Sequencing", - "ImmunoFISH", - "RT-qPCR", - "Data Integration", - "FAIRE-Seq", - "Immunotherapy", - "In Vitro Model", - "Not Applicable", - "Immunohistochemistry Staining Method", - "Computational Modeling", - "Metabolite Profiling Assay", - "Stimulated Raman Scattering", - "Cryo-Electron Microscopy", - "Monolayer Stress Microscopy", - "Ultrasound Imaging", - "Stimulated Emission Depletion Microscopy", - "Single Molecule Forster Resonance Energy Transfer", - "Questionnaire", - "Sirius Red Staining", - "Micropipette Aspiration", - "Confocal Microscopy", - "DBiT-Seq", - "qPCR", - "Dideoxy Chain Termination DNA Sequencing", - "unspecified", - "Positron Emission Tomography", - "Single Cell Gel Electrophoresis", - "Statistical Modeling", - "Targeted Therapy Agent", - "Gene Ontology Enrichment Analysis", - "RIP", - "Cytometric Bead Array Assay", - "Stochastic Optical Reconstruction Microscopy", - "In Vivo Bioluminescence", - "Apoptosis Assay", - "Nanowire", - "Dynamic Light Scattering", - "Synaptophysin Staining Method", - "Multiscale Light Sheet Microscopy", - "Chimeric Antigen Receptor T-Cell Therapy", - "MEMA Cell Growth Assay", - "Chemotaxis Assay", - "Patient Derived Xenograft", - "Tiling Array", - "Phagocytosis Assay", - "Southern Blotting", - "Tissue Engineering", - "PET-CT", - "Pending Annotation", - "Brillouin Microscopy", - "Multiplexed Ion Beam Imaging", - "Co-Immunoprecipitation", - "Clonality Analysis", - "Bio-Layer Interferometry", - "Shotgun Mass Spectrometry", - "scNT-Seq", - "Micropipette Adhesion Assay", - "Super-Resolution Microscopy", - "Cell Proliferation Assay", - "Single-Cell BCR Sequencing", - "Collision-Induced Dissociation", - "TRAP Staining", - "Proteomics Assay", - "Direct Long-Read RNA Sequencing", - "Lattice Light Sheet Microscopy", - "X-Ray Crystallography", - "ChIA-PET", - "Electron Microscopy", - "HiChIP", - "Cytochemical Stain", - "Fluorescent In Situ Sequencing", - "Xenograft", - "ChIP-PCR", - "smRNA-seq", - "Desorption Electrospray Ionization", - "RNAi Screen", - "Single Nucleus RNA-Sequencing", - "Global Chromatin Profiling", - "Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture", - "Fluorescence Activated Cell Sorting", - "mRNA Sequencing", - "CASFISH", - "Alcian Blue Staining Method", - "Dark Field Microscopy", - "Western Blotting", - "TUNEL assay", - "Tandem Mass Tagging", - "Second-Harmonic Imaging Microscopy", - "Inductively-Coupled Plasma Mass Spectrometry", - "Dye Endocytosis Assay", - "Brightfield Microscopy", - "Gene Set Enrichment Analysis", - "Enzyme-Linked Immunospot Assay", - "Single-Molecule Tracking", - "Affinity Purification Mass Spectrometry", - "Light Sheet Microscopy", - "Gene Silencing", - "Ribo-Seq", - "5C", - "Endotoxin Assay", - "MNase-Seq", - "3' RNA-seq", - "smFISH", - "Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging", - "Precision Run-On Sequencing", - "Tuba-Seq", - "Electron Diffraction", - "Wound-Healing Assay", - "Multiplexed Immunofluorescence", - "Single Cell RNA-Sequencing", - "Synthesis", - "Mint-ChIP", - "Graphite Furnace Atomic Absorption Spectrometry", - "Optical Coherence Tomography", - "Reverse Phase Protein Array", - "Size Exclusion Chromatography", - "seqFISH", - "ChIP-qPCR assay", - "Flow Cytometry", - "Small-Angle X-ray Scattering", - "Autoradiography", - "Optogenetic Assay", - "FISH", - "Scratch Assay", - "Optical Tweezers", - "10x Multiome", - "Nanopatterning", - "DNA Methylation Array", - "DRIP-seq", - "Single-Molecule Localization Microscopy", - "Interference Reflection Microscopy", - "Traction Force Microscopy", - "Whole Genome Sequencing", - "Total Internal Reflection Fluorescence Microscopy", - "Next Generation Sequencing", - "Photoacoustic Imaging", - "ELISA", - "ATP Bioluminescence Assay", - "Transcription profiling by NanoString", - "Droplet Digital PCR", - "Cross-Linking Immunoprecipitation High-throughput Sequencing", - "Multiparametric Magnetic Resonance Imaging", - "CUT&Tag-Sequencing", - "High Throughput Screening", - "Mammosphere Formation Assay", - "Immunoprecipitation", - "Optical Stretcher", - "Multiphoton Microscopy", - "QFISH", - "MALDI-TOF Mass Spectrometry", - "High-Content Screen", - "Artificial Intelligence", - "Cell Fractionation", - "Partial Wave Spectroscopy", - "Targeted Error Correction Sequencing", - "Microfluidics", - "Clinical Study", - "Whole Exome Sequencing", - "Barcode-Seq", - "Image Cytometry", - "Cell Adhesion Assay", - "Surface Plasmon Resonance", - "Hydrogels", - "Label-free Protein Quantification by LC/MS", - "Cell Culture", - "Gelatin Zymography", - "Structural Variant Analysis", - "RNA Sequencing", - "Viral Transduction", - "3D Cell Culture", - "Bisulfite Sequencing", - "TAB-Seq", - "Reporter Gene Assay", - "Angiogenesis Assay", - "Mass Spectrometry", - "CUT&RUN", - "Amplicon Sequencing", - "Magnetic Resonance Imaging", - "Picrosirius Staining", - "Targeted Genome Sequencing", - "Immunoassay", - "RIP-Seq", - "Spectroscopy", - "Raman Spectroscopy", - "4C", - "Point Accumulation for Imaging in Nanoscale Topography", - "Von Kossa Staining", - "Differential Scanning Fluorimetry", - "Murine Model", - "In Vitro Translation", - "Reverse-Phase High-Performance liquid Chromatography", - "Cell-free Circulating Tumor DNA Assay", - "Nano-hmC-Seal", - "In Vitro Cell Killing Assay", - "PlateSeq", - "Atomic Force Microscopy", - "Rheometry", - "Tissue Microarray", - "Whole Genome Bisulfite Sequencing", - "Microcontact Printing", - "Plasmid Construction", - "Circular Dichroism Spectroscopy", - "Transmission Electron Microscopy", - "Low-Vacuum Scanning Electron Microscopy", - "Paraquat Survival Assay", - "Magnetic Tweezers", - "Drop-Seq", - "MULTI-Seq", - "Computed Tomography", - "Electrophoretic Mobility Shift Assay", - "Co-Immunoprecipitation Mass Spectrometry", - "Magnetically Activated Cell Sorting", - "CellTiter-Glo Luminescent Cell Viability Assay", - "Widefield Fluorescence Microscopy", - "Liquid Chromatography Mass Spectrometry", - "Mathematical Modeling", - "Genotyping", - "Ribosomal P Protein Antibody Measurement", - "Scanning Electron Microscopy", - "SDS-PAGE", - "HPLC-MSMS", - "Fluorescence Correlation Spectroscopy", - "Allograft", - "Optical Mapping", - "Visium Spatial Gene Expression", - "Karyotyping", - "Methylation-Specific PCR", - "Deep Mutational Scanning", - "Fluorescent Cell Barcoding", - "Hydrophilic Interaction Chromatography", - "Single Nucleotide Polymorphism Array", - "In Situ Hybridization", - "3D Bioprinting", - "Efferocytosis Assay", - "Luminescent Cell Viability Assay", - "Differential Interference Contrast Microscopy", - "Hematoxylin and Eosin Staining Method", - "Proximity Ligation Assay", - "Fluorescent Antibody Procedure", - "Fourier-Transform Infrared Spectroscopy", - "TIRF Microscopy", - "Forster Resonance Energy Transfer", - "UPLC-MSMS", - "Immobilized Metal Affinity Chromatography", - "Single-Cell Barcode Chip", - "ATAC-Seq", - "Cell-spreading Assay", - "CRISPR", - "siRNA", - "Metastatic Colonization Assay", - "cDNA Array", - "RAS Protein Family Activation Assay", - "Cyclic Immunofluorescence", - "Cerenkov Luminescence Imaging", - "Immunocytochemistry", - "Atomic Absorption Spectroscopy", - "Quantitative Point Accumulation for Imaging in Nanoscale Topography", - "Co-culture Assay", - "Bioluminescence Imaging", - "CLIP-qPCR", - "Phylogenetic Analysis", - "Virus Plaque Assay", - "Single Cell DNA Sequencing", - "3C", - "Migration Assay", - "In-Cell Western Assay", - "Fluorescence Lifetime Imaging Microscopy", - "Macrophage Polarization Assay", - "Knife-Edge Scanning Microscopy", - "Permeability Assay", - "Multi-Angle Light Scattering", - "L1000 mRNA Profiling Assay", - "Molecular Simulations", - "Reduced Representation Bisulfite Sequencing", - "Field-Emission Scanning Electron Microscopy", - "Bioelectrochemical Analysis", - "Optical Emission Spectroscopy", - "Confocal Reflectance Quantitative Phase Microscopy", - "imaging", - "MeRIP-Seq", - "Single Cell ATAC-Seq", - "10-cell RNA Sequencing", - "Trichrome Staining Method", - "scCGI-seq", - "Scanning Angle Interference Microscopy", - "Focused Ion Beam Scanning Electron Microscopy", - "Electron Paramagnetic Resonance Spectroscopy", - "Dynamic Contrast-Enhanced Magnetic Resonance Imaging", - "Transwell Assay", - "16S Ribosomal Gene Sequencing Assay", - "Modeling", - "In Vitro Selection", - "ChIP-Seq", - "Target Engagement Assay", - "Fluorescence Microscopy", - "Nested PCR", - "DNase-Seq", - "Epidemiological Method", - "CITE-seq", - "HL-Chip", - "Nuclear Magnetic Resonance", - "Single-Cell TCR Sequencing", - "Microscopy", - "Pull-Down Assay", - "Hi-C", - "Dynamic Force Spectroscopy", - "Multiplexed Error-Robust Fluorescence In Situ Hybridization", - "Invasion Assay", - "Cytokine Expression Profile", - "DNA Gene-Expression Microarray", - "Diffusion Weighted Imaging", - "Fluorescence Imaging", - "Gas Chromatography Mass Spectrometry", - "Nanopore Sequencing", - "Multi-Isotope Mass Spectrometry", - "MicroRNA Sequencing", - "X-Ray Micro-Computed Tomography", - "NanoString Digital Spatial Profiling", - "Suspended Microchannel Resonator", - "Antitumor Drug Screening Assay", - "RT-PCR", - "Quantitative Multiplex Immunofluorescence", - "Cryo-Electron Tomography", - "Cytotoxicity Assay", - "X-Ray Diffraction", - "Immunofluorescent Staining Method", - "Atomic Absorption Spectrophotometry", - "Imaging Mass Cytometry", - "Multiplexed Immunohistochemistry", - "Single Cell Cytokine Detection Chip Assay", - "MeDIP", - "snRNA-seq", - "Survival Analysis", - "Magnetic Twisting Cytometry", - "Tandem Mass Spectrometry", - "Isothermal Titration Calorimetry", - "Mass Cytometry", - "Soft Agar Assay", - "MicroRNA Expression Array", - "Nm-seq", - "Liquid Chromatography/Tandem Mass Spectrometry", - "Deep Learning", - "Chemiluminescent Assay", - "Luciferase Reporter Assay", - "Dual-Luciferase Reporter Assay", - "Thermal Shift Assay", - "Time-Correlated Single Photon Counting", - "Photolithography", - "eCLIP-Seq", - "Comparative Genomic Hybridization", - "Surveyor Nuclease Assay", - "UV Photocrosslinking", - "Micro-computed Tomography", - "Colorimetric Cell Viability Assay", - "Intravital Microscopy", - "Enzyme Activity Assay", - "Methyl Binding Domain Sequencing", - "Cell Cycle Assay", - "scSLAM-seq", - "Vibrational Spectroscopy", - "shRNA", - "Bicinchoninic Acid Assay", - "Computational Tool", - "Fourier Transform Ion Cyclotron Resonance Mass Spectrometry", - "Electrospray Ionization Time-of-Flight Mass Spectrometry", - "PCR", - "Targeted Transcriptome Sequencing", - "Binding Assay", - "Synthetic Genetic Array" - ] - } - }, - "Dataset Description": { - "type": "string", - "title": "DatasetDescription", - "description": "Text description of the dataset.", - "maxLength": 500 - }, - "DatasetView_id": { - "type": "string", - "title": "DatasetViewid", - "description": "A unique primary key that enables record updates using schematic", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Species": { - "type": "array", - "title": "DatasetSpecies", - "description": "The species the data was collected on.", - "items": { - "enum": [ - "Boar", - "Mouse", - "Sheep", - "Asian Elephant", - "Rabbit", - "Multispecies", - "Cow", - "Human", - "Cat", - "Human Cell Line", - "Guinea Pig", - "unspecified", - "Opossum", - "Armadillo", - "Fruit Fly", - "Dog", - "Horse", - "Trichoplax adhaerens", - "Chicken", - "Escherichia coli", - "Human Patient", - "Rat", - "unknown", - "Yeast", - "Rhesus monkey", - "Worm", - "Zebrafish", - "African Bush Elephant" - ] - } - }, - "Dataset Tumor Type": { - "type": "array", - "title": "DatasetTumorType", - "description": "The tumor type(s), if applicable, of the data collected on", - "items": { - "enum": [ - "Angiosarcoma", - "Glioblastoma", - "Ovarian Carcinoma", - "Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features", - "Precursor B-cell lymphoblastic leukemia", - "Primary Central Nervous System Lymphoma", - "Cutaneous T Cell Lymphoma", - "Giant Cell Tumor", - "Colorectal Adenoma", - "Neuroepithelial Neoplasm", - "Prostate Adenocarcinoma", - "Fibrolamellar Carcinoma", - "Rosette-Forming Glioneuronal Tumor", - "Non-Functioning Pituitary Gland Adenoma", - "Adenocarcinoma", - "Biliary Tract Carcinoma", - "Acinar Cell Carcinoma", - "Luminal A Breast Carcinoma", - "Malignant Pancreatic Neoplasm", - "Retinoblastoma", - "Gastric Adenocarcinoma", - "Lymphoma", - "B-Cell Non-Hodgkin Lymphoma", - "Pancreatic Neoplasm", - "Plexiform Neurofibroma", - "Mycosis Fungoides", - "Pituitary Gland Adenoma", - "Not Applicable", - "Cervical Neoplasm", - "Combined Hepatocellular Carcinoma and Cholangiocarcinoma", - "Bone Neoplasm", - "Thyroid Gland Carcinoma", - "Ductal Breast Carcinoma In Situ", - "Malignant Skin Neoplasm", - "Bladder Neoplasm", - "Carcinoma", - "Hodgkin Lymphoma", - "Leukemia", - "Colorectal Neoplasm", - "Ewing Sarcoma", - "Urothelial Carcinoma", - "Clear Cell Renal Cell Carcinoma", - "Malignant Peripheral Nerve Sheath Tumor", - "Basal-Like Breast Carcinoma", - "Pilocytic Astrocytoma", - "Craniopharyngioma", - "Basal Cell Neoplasm", - "Triple-Negative Breast Carcinoma", - "Ovarian Neoplasm", - "Rectal Adenocarcinoma", - "Uveal Neoplasm", - "Acute Monocytic Leukemia", - "Skin Carcinoma", - "Gastroesophageal Junction Adenocarcinoma", - "Multiple Myeloma", - "Oral Cavity Neoplasm", - "Gastrointestinal Stromal Neoplasm", - "Mantle Cell Lymphoma", - "Marginal Zone Lymphoma", - "Penile Carcinoma", - "T-Cell Lymphoma", - "Synovial Sarcoma", - "Malignant Neoplasm", - "Central Nervous System Cavernous Hemangioma", - "Fibrosarcoma", - "Prostate Carcinoma", - "Cerebellar Neoplasm", - "Ovarian Adenosarcoma", - "B Acute Lymphoblastic Leukemia", - "Head and Neck Neoplasm", - "Chronic Myeloid Leukemia", - "Diffuse Large B-Cell Lymphoma", - "Leiomyoma", - "Acute Myeloid Leukemia", - "Esophageal Adenocarcinoma", - "Meningioma", - "Malignant Genitourinary System Neoplasm", - "Myeloid Leukemia", - "Histiocytic Sarcoma", - "Oral Cavity Squamous Cell Carcinoma", - "Bladder Carcinoma", - "Not-Applicable", - "Gallbladder Carcinoma", - "Non-Hodgkin Lymphoma", - "Osteosarcoma", - "Myeloproliferative Neoplasm", - "Pancreatic Ductal Adenocarcinoma", - "Breast Carcinoma", - "Esophageal Carcinoma", - "Atypical Teratoid/Rhabdoid Tumor", - "Pan-cancer", - "Barrett Esophagus", - "Breast Neoplasm", - "Nasopharyngeal Carcinoma", - "Pending Annotation", - "Sinonasal Squamous Cell Carcinoma", - "Colorectal Adenocarcinoma", - "Choriocarcinoma", - "Carcinoma In Situ", - "Pancreatic Neuroendocrine Carcinoma", - "Endometrial Neoplasm", - "Ovarian Serous Adenocarcinoma", - "Pancreatic Adenocarcinoma", - "Lung Squamous Cell Carcinoma", - "Lung Non-Small Cell Carcinoma", - "Lymphoid Leukemia", - "Plexiform Schwannoma", - "Liver and Intrahepatic Bile Duct Neoplasm", - "Malignant Peritoneal Neoplasm", - "Astrocytoma", - "Lung Carcinoma", - "Schwannoma", - "Fibroepithelial Polyp", - "Intestinal Neoplasm", - "Testicular Embryonal Carcinoma", - "Kaposi Sarcoma", - "Follicular Lymphoma", - "Rhabdomyosarcoma", - "Pheochromocytoma", - "Hepatocellular Carcinoma", - "Esophageal Squamous Cell Carcinoma", - "Gastric Neoplasm", - "Cervical Carcinoma", - "Serous Tubal Intraepithelial Carcinoma", - "T Acute Lymphoblastic Leukemia", - "Cholangiocarcinoma", - "Colon Adenocarcinoma", - "Uterine Adenosarcoma", - "Soft Tissue Sarcoma", - "Central Nervous System Neoplasm", - "Gastric Carcinoma", - "Lung Adenocarcinoma", - "Colon Carcinoma", - "Myoepithelioma", - "Medulloblastoma", - "Cutaneous Melanoma", - "Invasive Ductal Breast Carcinoma", - "Prostate Neoplasm", - "Acute Lymphoblastic Leukemia", - "Neuroendocrine Neoplasm", - "Lung Small Cell Carcinoma", - "Uveal Melanoma", - "Brain Neoplasm", - "Skin Neoplasm", - "Malignant Digestive System Neoplasm", - "Malignant Glioma", - "Dysembryoplastic Neuroepithelial Neoplasm", - "Castration-Resistant Prostate Carcinoma", - "Colorectal Carcinoma", - "Liver and Intrahepatic Bile Duct Carcinoma", - "Glioma", - "Neurofibroma", - "Primary Myelofibrosis", - "Plasmablastic Lymphoma", - "Head and Neck Squamous Cell Carcinoma", - "Neuroblastoma", - "Lung Neoplasm", - "Melanoma", - "Thyroid Gland Anaplastic Carcinoma", - "Cervical Small Cell Carcinoma", - "Ependymoma", - "Sarcoma", - "Gastroesophageal Adenocarcinoma", - "Acute Promyelocytic Leukemia", - "Pancreatic Carcinoma", - "Low Grade Glioma", - "Mesothelioma", - "High Grade Ovarian Serous Adenocarcinoma", - "Malignant Ovarian Neoplasm", - "Head and Neck Carcinoma", - "Cellular Schwannoma", - "Oropharyngeal Neoplasm", - "Teratoma", - "Breast Adenocarcinoma", - "Chondroblastoma", - "Intrahepatic Cholangiocarcinoma", - "Chronic Lymphocytic Leukemia", - "Vascular Neoplasm", - "Endometrial Carcinoma", - "Myeloid Neoplasm", - "Extraventricular Neurocytoma", - "Salivary Gland Adenoid Cystic Carcinoma", - "Plasmacytoma", - "Squamous Cell Carcinoma", - "Renal Cell Carcinoma", - "Malignant Brain Neoplasm", - "" - ] - } - }, - "Dataset Tissue": { - "type": "array", - "title": "DatasetTissue", - "description": "Tissue type(s) associated with the dataset", - "items": { - "enum": [ - "Cervix Uteri", - "Vascular Endothelium", - "Thymus", - "Tongue", - "Hippocampus", - "Stomach", - "Frontal Lobe", - "Colon", - "Pleura", - "Pelvic Lymph Nodes", - "Heart", - "Pharynx", - "Intestine", - "Connective and Soft Tissue", - "Lymph Nodes of Axilla or Arm", - "Gastroesophageal Junction", - "Fallopian Tube", - "Vagina", - "Not Applicable", - "Liver", - "Duodenum", - "Epithelium", - "Ligament", - "Joint", - "Pituitary Gland", - "Lymph Nodes of Inguinal Region or Leg", - "Heart Muscle", - "Pancreas", - "Omentum", - "Ovary", - "Lymph", - "Lung", - "Reproductive System", - "Placenta", - "Adipose Tissue", - "Mucosa", - "Cancer-Associated Fibroblast", - "Embryo", - "Intrathoracic Lymph Nodes", - "Alveolus", - "unspecified", - "Meninges", - "Hematopoietic System", - "Small Intestine", - "Olfactory Mucosa", - "Spinal Cord", - "Blood", - "Mesenchyme", - "Ascending Colon", - "Ear", - "Bladder", - "Cartilage", - "Rectum", - "Vertebra", - "Head and Neck", - "Endometrium", - "Gastrointestinal Tract", - "Choroid", - "Caecum", - "Pending Annotation", - "Embryonic Heart", - "Mammary Gland", - "Adrenal Gland", - "Lymphatic System", - "Intra-Abdominal Lymph Nodes", - "Abdominal Esophagus", - "Respiratory System", - "Larynx", - "Breast", - "Bone", - "Thyroid Gland", - "Bile Duct", - "Muscle", - "Peripheral Blood Mononuclear Cell", - "Trachea", - "Synovial Membrane", - "Tonsil", - "Main Bronchus", - "Testis", - "Artery", - "Esophagus", - "Brain", - "Genitourinary", - "Prostate Gland", - "Salivary Gland", - "Lymph Node", - "Foreskin", - "Sinonasal Tract", - "Oral Mucosa", - "Bone Marrow", - "Lymphoid Tissue", - "Cardia", - "Uterus", - "Kidney", - "Vein", - "Oral Cavity", - "Peripheral Nerves", - "Umbilical Cord", - "Nervous System", - "Blood Vessel", - "Skin", - "Eye", - "Periodontal Ligament", - "Endothelium", - "Hair Follicle", - "Aorta", - "Endocervix", - "Spleen", - "Tendon", - "Cornea", - "Peritoneum", - "Gonad", - "Nasal Cavity", - "Sclera", - "" - ] - } - }, - "Component": { - "type": "string", - "title": "Component", - "description": "Type of metadata associated with this entity.", - "not": { - "type": "null" - }, - "minLength": 1 - }, - "Dataset Doi":{ - "type": "string", - "title": "DatasetDoi", - "description": "The Digital Object Identifier (DOI) associated with the dataset.", - "not": { - "type": "null" - }, - "minLength": 1 - } - }, - "required": [ - "Dataset Name", - "Dataset Alias", - "Dataset Url", - "Dataset Assay", - "DatasetView_id", - "Dataset Species", - "Component", - "Dataset Doi" - ] -} \ No newline at end of file From 70097389e66a4712aa0275a44e43e85fade3fd5d Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 13:44:14 -0700 Subject: [PATCH 081/106] Update mc2.DatasetView.schema.json --- json_schemas/mc2.DatasetView.schema.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schemas/mc2.DatasetView.schema.json b/json_schemas/mc2.DatasetView.schema.json index 7088d3b2..27e8af6e 100644 --- a/json_schemas/mc2.DatasetView.schema.json +++ b/json_schemas/mc2.DatasetView.schema.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-07/schema#", "$id": "http://example.com/DatasetView_validation", - "title": "DatasetView_validation", + "title": "DatasetView_validation_EXAMPLE", "type": "object", "properties": { "Study Key": { From cf4cb83a47be8f21181c03b930727261edb1b1de Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 14:07:16 -0700 Subject: [PATCH 082/106] Update mc2.DatasetView.schema.json --- json_schemas/mc2.DatasetView.schema.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/json_schemas/mc2.DatasetView.schema.json b/json_schemas/mc2.DatasetView.schema.json index 27e8af6e..d6e7dc42 100644 --- a/json_schemas/mc2.DatasetView.schema.json +++ b/json_schemas/mc2.DatasetView.schema.json @@ -1,6 +1,6 @@ { "$schema": "http://json-schema.org/draft-07/schema#", - "$id": "http://example.com/DatasetView_validation", + "$id": "http://example.com/DatasetView_validation_EXAMPLE", "title": "DatasetView_validation_EXAMPLE", "type": "object", "properties": { From 254883fd42078a16003926374a6b33f7a6baf211 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 14:56:38 -0700 Subject: [PATCH 083/106] Create mc2.CA261841duoCodeAR.schema.json --- .../mc2.CA261841duoCodeAR.schema.json | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 json_schemas/mc2.CA261841duoCodeAR.schema.json diff --git a/json_schemas/mc2.CA261841duoCodeAR.schema.json b/json_schemas/mc2.CA261841duoCodeAR.schema.json new file mode 100644 index 00000000..cc50f3d9 --- /dev/null +++ b/json_schemas/mc2.CA261841duoCodeAR.schema.json @@ -0,0 +1,36 @@ +{ + "$schema": "http://json-schema.org/draft-07/schema", + "title": "MC2 CA261841 AR-DUO schema", + "$id": "Multi Consortia Coordinating Center-CA261841-duoCodeAR-10.0.0", + "description": "This schema defines how data may be accessed for study CA261841-CR_2024", + "allOf": [ + { + "if": { + "properties": { + "duoCodes": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": "RTN, NPUNCU" + } + } + } + }, + "then": { + "properties": { + "_accessRequirementIds": { + "type": "array", + "items": { + "type": "string" + }, + "contains": { + "const": 9606628 + } + } + } + } + } + ] +} \ No newline at end of file From bb53cd3d2b92fb73ee24b9e9c232d02b8f690dd3 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 15:11:41 -0700 Subject: [PATCH 084/106] Update mc2.duoCodeAR_TEMPLATE.schema.json --- json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json | 12 +++--------- 1 file changed, 3 insertions(+), 9 deletions(-) diff --git a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json index 1525ae8e..d1a36d09 100644 --- a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json +++ b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-07/schema", "title": "MC2 Example AR-DUO schema", - "$id": "MC2-Infrastructure-Design-AR-DUO.1.0", + "$id": "Multi Consortia Coordinating Center-CA987654-duoCodeAR-10.0.0", "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", "allOf": [ { @@ -13,7 +13,7 @@ "type": "string" }, "contains": { - "const": "RTN" + "const": "IRB" } } } @@ -22,9 +22,6 @@ "properties": { "_accessRequirementIds": { "type": "array", - "items": { - "type": "string" - }, "contains": { "const": 0 } @@ -41,7 +38,7 @@ "type": "string" }, "contains": { - "const": "NPU" + "const": "HMB" } } } @@ -50,9 +47,6 @@ "properties": { "_accessRequirementIds": { "type": "array", - "items": { - "type": "string" - }, "contains": { "const": 0 } From a8472fee197254ba6f00e04a4580e4b576abda5c Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 15:11:44 -0700 Subject: [PATCH 085/106] Update mc2.CA261841duoCodeAR.schema.json --- json_schemas/mc2.CA261841duoCodeAR.schema.json | 3 --- 1 file changed, 3 deletions(-) diff --git a/json_schemas/mc2.CA261841duoCodeAR.schema.json b/json_schemas/mc2.CA261841duoCodeAR.schema.json index cc50f3d9..bb6e2fa3 100644 --- a/json_schemas/mc2.CA261841duoCodeAR.schema.json +++ b/json_schemas/mc2.CA261841duoCodeAR.schema.json @@ -22,9 +22,6 @@ "properties": { "_accessRequirementIds": { "type": "array", - "items": { - "type": "string" - }, "contains": { "const": 9606628 } From 6211464b9ad4cf828882c664510f4ba20a780a42 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 15:47:41 -0700 Subject: [PATCH 086/106] Update mc2.CA261841duoCodeAR.schema.json Indicate duoCodes annotation is required to satisfy if statement and trigger ARs --- json_schemas/mc2.CA261841duoCodeAR.schema.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/json_schemas/mc2.CA261841duoCodeAR.schema.json b/json_schemas/mc2.CA261841duoCodeAR.schema.json index bb6e2fa3..e8ca4981 100644 --- a/json_schemas/mc2.CA261841duoCodeAR.schema.json +++ b/json_schemas/mc2.CA261841duoCodeAR.schema.json @@ -16,7 +16,8 @@ "const": "RTN, NPUNCU" } } - } + }, + "required": ["duoCodes"] }, "then": { "properties": { From e6fb34efedaa9aaaf1efe88d00d428b7fb38fac0 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Wed, 2 Apr 2025 15:54:10 -0700 Subject: [PATCH 087/106] Update mc2.duoCodeAR_TEMPLATE.schema.json Add duoCodes requirement to template if statement --- json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json index d1a36d09..c5904d54 100644 --- a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json +++ b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json @@ -16,7 +16,8 @@ "const": "IRB" } } - } + }, + "required": ["duoCodes"] }, "then": { "properties": { @@ -41,7 +42,8 @@ "const": "HMB" } } - } + }, + "required": ["duoCodes"] }, "then": { "properties": { From fee22df1099ac132faabe74bc9880134cbb5d172 Mon Sep 17 00:00:00 2001 From: Verena Chung <9377970+vpchung@users.noreply.github.com> Date: Fri, 4 Apr 2025 15:02:11 -0700 Subject: [PATCH 088/106] Fix docs (#189) * remove redundant "Download Template" link (fix for #186) * add back in link mapping to landing page (fix for #187) * remove unnecessary tracked files from main * create doc pages for valid values during pre-build * create docs navigation during on_files * remove nav links from docs config * add PyYAML to pip install * stop tracking valid value doc pages * rename filanem from `template.csv` to `reference.csv` * add comments and helper functions for easier future maintenance * fix bug with rendering backslashes * lint * update config.nav * add logic checking for doc pages for robustness * rename ambiguous variable --- .github/workflows/build-docs.yml | 2 +- docs/index.md | 6 +- docs/model/DataDSP.md | 5 +- docs/model/dataset.md | 4 +- docs/model/education.md | 4 +- docs/model/file.md | 4 +- docs/model/grant.md | 4 +- docs/model/person.md | 4 +- docs/model/publication.md | 4 +- docs/model/study.md | 4 +- docs/model/tool.md | 4 +- docs/valid_values/dataset.md | 55 -------- docs/valid_values/education.md | 113 ---------------- docs/valid_values/file.md | 63 --------- docs/valid_values/grant.md | 55 -------- docs/valid_values/person.md | 63 --------- docs/valid_values/publication.md | 45 ------- docs/valid_values/sharingPlans.md | 71 ---------- docs/valid_values/tool.md | 163 ----------------------- mkdocs.yml | 29 +---- modules/dataset/template.csv | 16 --- modules/education/template.csv | 26 ---- modules/file/template.csv | 23 ---- modules/grant/template.csv | 18 --- modules/person/template.csv | 20 --- modules/publication/template.csv | 18 --- modules/sharingPlans/template.csv | 29 ----- modules/study/template.csv | 18 --- modules/tool/template.csv | 47 ------- nav.yml | 15 +++ scripts/hooks.py | 207 ++++++++++++++++++++++-------- 31 files changed, 183 insertions(+), 956 deletions(-) delete mode 100644 docs/valid_values/dataset.md delete mode 100644 docs/valid_values/education.md delete mode 100644 docs/valid_values/file.md delete mode 100644 docs/valid_values/grant.md delete mode 100644 docs/valid_values/person.md delete mode 100644 docs/valid_values/publication.md delete mode 100644 docs/valid_values/sharingPlans.md delete mode 100644 docs/valid_values/tool.md delete mode 100644 modules/dataset/template.csv delete mode 100644 modules/education/template.csv delete mode 100644 modules/file/template.csv delete mode 100644 modules/grant/template.csv delete mode 100644 modules/person/template.csv delete mode 100644 modules/publication/template.csv delete mode 100644 modules/sharingPlans/template.csv delete mode 100644 modules/study/template.csv delete mode 100644 modules/tool/template.csv create mode 100644 nav.yml diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index b62bcd9c..890bf371 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -28,5 +28,5 @@ jobs: path: .cache restore-keys: | mkdocs-material- - - run: pip install mkdocs-material mkdocs-table-reader-plugin pandas + - run: pip install mkdocs-material mkdocs-table-reader-plugin pandas pyyaml - run: mkdocs gh-deploy --force diff --git a/docs/index.md b/docs/index.md index 38a9d049..3cb43fdd 100644 --- a/docs/index.md +++ b/docs/index.md @@ -77,4 +77,8 @@ We continuously work to improve our data models. If you notice any issues or hav You can also read our [contribution guidelines] if you'd like to submit updates directly. !!!important - Changes to existing terms may have downstream impacts, so please provide clear justifications for any major revisions. \ No newline at end of file + Changes to existing terms may have downstream impacts, so please provide clear justifications for any major revisions. + + +[contribution guidelines]: https://mc2-center.github.io/data-models/contributing/ +[let us know]: https://github.com/mc2-center/data-models/issues/new?assignees=aditigopalan&labels=bug&projects=&template=bug-report.md&title=%5Bbug%5D+ \ No newline at end of file diff --git a/docs/model/DataDSP.md b/docs/model/DataDSP.md index 5d907541..279f36d7 100644 --- a/docs/model/DataDSP.md +++ b/docs/model/DataDSP.md @@ -37,7 +37,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. - -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/DataDSP.csv) - -{{ read_csv('sharingPlans/template.csv') }} \ No newline at end of file +{{ read_csv('sharingPlans/reference.csv') }} \ No newline at end of file diff --git a/docs/model/dataset.md b/docs/model/dataset.md index 5f3a5970..b1d82556 100644 --- a/docs/model/dataset.md +++ b/docs/model/dataset.md @@ -43,6 +43,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/DatasetView.csv) - -{{ read_csv('dataset/template.csv') }} +{{ read_csv('dataset/reference.csv') }} diff --git a/docs/model/education.md b/docs/model/education.md index e001c9ea..b5745f44 100644 --- a/docs/model/education.md +++ b/docs/model/education.md @@ -41,6 +41,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/EducationalResource.csv) - -{{ read_csv('education/template.csv') }} +{{ read_csv('education/reference.csv') }} diff --git a/docs/model/file.md b/docs/model/file.md index c2103832..c073204b 100644 --- a/docs/model/file.md +++ b/docs/model/file.md @@ -41,6 +41,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/FileView.csv) - -{{ read_csv('file/template.csv') }} \ No newline at end of file +{{ read_csv('file/reference.csv') }} \ No newline at end of file diff --git a/docs/model/grant.md b/docs/model/grant.md index cbca37db..3296ac26 100644 --- a/docs/model/grant.md +++ b/docs/model/grant.md @@ -49,6 +49,4 @@ It is important to note that where these examples can generally guide you on the Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/GrantView.csv) - -{{ read_csv('grant/template.csv') }} +{{ read_csv('grant/reference.csv') }} diff --git a/docs/model/person.md b/docs/model/person.md index 4d645f9d..24e25797 100644 --- a/docs/model/person.md +++ b/docs/model/person.md @@ -45,6 +45,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/PersonView.csv) - -{{ read_csv('person/template.csv') }} \ No newline at end of file +{{ read_csv('person/reference.csv') }} \ No newline at end of file diff --git a/docs/model/publication.md b/docs/model/publication.md index f11c50c5..a0e0f6b6 100644 --- a/docs/model/publication.md +++ b/docs/model/publication.md @@ -43,6 +43,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/PublicationView.csv) - -{{ read_csv('publication/template.csv') }} \ No newline at end of file +{{ read_csv('publication/reference.csv') }} \ No newline at end of file diff --git a/docs/model/study.md b/docs/model/study.md index 02190448..d165c506 100644 --- a/docs/model/study.md +++ b/docs/model/study.md @@ -46,6 +46,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/Study.csv) - -{{ read_csv('study/template.csv') }} \ No newline at end of file +{{ read_csv('study/reference.csv') }} \ No newline at end of file diff --git a/docs/model/tool.md b/docs/model/tool.md index 4648d81c..86bb2a71 100644 --- a/docs/model/tool.md +++ b/docs/model/tool.md @@ -38,6 +38,4 @@ The table below includes sample values to demonstrate proper attribute usage. Below is the full field reference table with attributes and their descriptions. -[– Download template](https://github.com/mc2-center/data-models/raw/main/templates/ToolView.csv) - -{{ read_csv('tool/template.csv') }} +{{ read_csv('tool/reference.csv') }} diff --git a/docs/valid_values/dataset.md b/docs/valid_values/dataset.md deleted file mode 100644 index 7035bbc8..00000000 --- a/docs/valid_values/dataset.md +++ /dev/null @@ -1,55 +0,0 @@ -List of standard terms for the [Dataset Data Model](../model/dataset.md). - -## Attribute: `Dataset Assay` - -
- -{{ read_csv('shared/assay.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Dataset File Formats` - -
- -{{ read_csv('shared/dataset_file_format.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Dataset Grant Number` - -
- -{{ read_csv('grant/grant_number.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Dataset Species` - -
- -{{ read_csv('shared/dataset_species.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Dataset Tissue` - -
- -{{ read_csv('shared/tissue.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - - -## Attribute: `Dataset Tumor Type` - -
- -{{ read_csv('shared/tumorType.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
diff --git a/docs/valid_values/education.md b/docs/valid_values/education.md deleted file mode 100644 index b2fe586f..00000000 --- a/docs/valid_values/education.md +++ /dev/null @@ -1,113 +0,0 @@ -List of standard terms for the [Education Resource Data Model](../model/education.md). - -## Attribute: `Resource Access Hazard` - -
- -{{ read_csv('education/ed_hazard.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Activity Type` - -
- -{{ read_csv('education/ed_activity_type.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Educational Level` - -
- -{{ read_csv('education/ed_level.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Grant Number` - -
- -{{ read_csv('grant/grant_number.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Intended Use` - -
- -{{ read_csv('education/ed_intended_use.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Language` - -
- -{{ read_csv('education/ed_language.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource License` - -
- -{{ read_csv('tool/tool_license.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Media Accessibility` - -
- -{{ read_csv('education/ed_accessibility.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Origin Institution` - -
- -{{ read_csv('institution/institution_name.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Primary Audience` - -
- -{{ read_csv('education/ed_primary_audience.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Primary Format` - -
- -{{ read_csv('education/ed_primary_format.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Topic` - -
- -{{ read_csv('education/ed_topic.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Resource Secondary Topic` - -See [Resource Topic](#attribute-resource-topic) diff --git a/docs/valid_values/file.md b/docs/valid_values/file.md deleted file mode 100644 index 4feefc26..00000000 --- a/docs/valid_values/file.md +++ /dev/null @@ -1,63 +0,0 @@ -List of standard terms for the [File Data Model](../model/file.md). - -## Attribute: `File Level` - -
- -{{ read_csv('file/processLevel.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `File Assay` - -
- -{{ read_csv('shared/assay.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `File Species` - -
- -{{ read_csv('shared/dataset_species.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `File Tumor Type` - -
- -{{ read_csv('shared/tumorType.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `File Tissue` - -
- -{{ read_csv('shared/tissue.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `File Format` - -
- -{{ read_csv('shared/dataset_file_format.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Data Use Codes` - -
- -{{ read_csv('shared/duo.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
\ No newline at end of file diff --git a/docs/valid_values/grant.md b/docs/valid_values/grant.md deleted file mode 100644 index 051a5f55..00000000 --- a/docs/valid_values/grant.md +++ /dev/null @@ -1,55 +0,0 @@ -List of standard terms for the [Grant Data Model](../model/grant.md). - - -## Attribute: `Grant Consortium Name` - -
- -{{ read_csv('consortium/consortium_name.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Grant Institution Alias` - -
- -{{ read_csv('institution/institution_alias.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Grant Institution Name` - -
- -{{ read_csv('institution/institution_name.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Grant Number` - -
- -{{ read_csv('grant/grant_number.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Grant Theme Name` - -
- -{{ read_csv('theme/theme_name.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Grant Type` - -
- -{{ read_csv('grant/grant_type.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
diff --git a/docs/valid_values/person.md b/docs/valid_values/person.md deleted file mode 100644 index c68c87ad..00000000 --- a/docs/valid_values/person.md +++ /dev/null @@ -1,63 +0,0 @@ -List of standard terms for the [Person Data Model](../model/person.md). - -## Attribute: `Chair Roles` - -
- -{{ read_csv('person/chair_roles.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Consent For Portal Display` - -
- -{{ read_csv('person/consent_for_portal_display.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Last Known Institution` - -
- -{{ read_csv('institution/institution_name.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Person Consortium Name` - -
- -{{ read_csv('consortium/consortium_name.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Person Grant Number` - -
- -{{ read_csv('grant/grant_number.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Portal Display` - -
- -{{ read_csv('person/portal_display.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Working Group Participation` - -
- -{{ read_csv('person/working_group_participation.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
diff --git a/docs/valid_values/publication.md b/docs/valid_values/publication.md deleted file mode 100644 index 7bb79158..00000000 --- a/docs/valid_values/publication.md +++ /dev/null @@ -1,45 +0,0 @@ -List of standard terms for the [Publication Data Model](../model/publication.md). - -## Attribute: `Publication Accessibility` - -
- -{{ read_csv('publication/publication_accessibility.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Publication Assay` - -
- -{{ read_csv('shared/assay.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Publication Grant Number` - -
- -{{ read_csv('grant/grant_number.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Publication Tissue` - -
- -{{ read_csv('shared/tissue.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Publication Tumor Type` - -
- -{{ read_csv('shared/tumorType.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
diff --git a/docs/valid_values/sharingPlans.md b/docs/valid_values/sharingPlans.md deleted file mode 100644 index e8fcac27..00000000 --- a/docs/valid_values/sharingPlans.md +++ /dev/null @@ -1,71 +0,0 @@ -List of standard terms for the [Dataset Sharing Plan Model](../model/DataDSP.md). - -## Attribute: `DSP Data Use Codes` - -
- -{{ read_csv('shared/duo.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `DSP Dataset Assay` - -
- -{{ read_csv('shared/assay.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `DSP Dataset File Formats` - -
- -{{ read_csv('shared/dataset_file_format.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `DSP Dataset Grant Number` - -
- -{{ read_csv('grant/grant_number.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- -## Attribute: `DSP Dataset Level` - -
- -{{ read_csv('file/processLevel.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- -## Attribute: `DSP Dataset Species` - -
- -{{ read_csv('shared/dataset_species.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `DSP Dataset Tissue` - -
- -{{ read_csv('shared/tissue.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - - -## Attribute: `DSP Dataset Tumor Type` - -
- -{{ read_csv('shared/tumorType.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
diff --git a/docs/valid_values/tool.md b/docs/valid_values/tool.md deleted file mode 100644 index 85ed75f3..00000000 --- a/docs/valid_values/tool.md +++ /dev/null @@ -1,163 +0,0 @@ -List of standard terms for the [Tool Data Model](../model/tool.md). - -## Attribute: `Tool Accessibility` - -
- -{{ read_csv('tool/tool_accessibility.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Cost` - -
- -{{ read_csv('tool/tool_cost.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Documentation Type` - -
- -{{ read_csv('tool/tool_documentation_type.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Download Type` - -
- -{{ read_csv('tool/tool_download_type.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Grant Number` - -
- -{{ read_csv('grant/grant_number.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Input Data` - -
- -{{ read_csv('tool/tool_data.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Input Format` - -
- -{{ read_csv('tool/tool_format.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Language` - -
- -{{ read_csv('tool/tool_language.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool License` - -
- -{{ read_csv('tool/tool_license.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Link Type` - -
- -{{ read_csv('tool/tool_link_type.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Operating System` - -
- -{{ read_csv('tool/tool_operating_system.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Operation` - -
- -{{ read_csv('tool/tool_operation.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Output Data` - -See [Tool Input Data](#attribute-tool-input-data) - - -## Attribute: `Tool Output Format` - -See [Tool Input Data](#attribute-tool-input-format) - - -## Attribute: `Tool Topic` - -
- -{{ read_csv('tool/tool_topic.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Type` - -
- -{{ read_csv('tool/tool_type.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Entity Role` - -
- -{{ read_csv('tool/entity_role.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Entity Type` - -
- -{{ read_csv('tool/entity_type.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
- - -## Attribute: `Tool Package Dependencies Present` - -
- -{{ read_csv('shared/boolean.csv', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }} - -
\ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index 901da455..cb792d8c 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -7,34 +7,9 @@ site_description: >- repo_url: https://github.com/mc2-center/data-models repo_name: data-models -# Navigation +# Navigation - see nav.yml to edit the actual navigation nav: - - Home: - - index.md - - home/tutorial.md - - Data Models: - - Dataset Data Model: model/dataset.md - - Dataset Sharing Plan: model/DataDSP.md - - Education Resource Data Model: model/education.md - - File Data Model: model/file.md - - Grant Data Model: model/grant.md - - Person Data Model: model/person.md - - Publication Data Model: model/publication.md - - Study Data Model: model/study.md - - Tool Data Model: model/tool.md - - - Standard Terms: - - All terms: valid_values/all_terms.md - - Terms by model: - - Dataset: valid_values/dataset.md - - Dataset Sharing Plan: valid_values/sharingPlans.md - - Education Resource: valid_values/education.md - - File: valid_values/file.md - - Grant: valid_values/grant.md - - Person: valid_values/person.md - - Publication: valid_values/publication.md - - Tool: valid_values/tool.md - - Contributing to the Data Model: contributing.md + - index.md # Theme configuration theme: diff --git a/modules/dataset/template.csv b/modules/dataset/template.csv deleted file mode 100644 index 0742b958..00000000 --- a/modules/dataset/template.csv +++ /dev/null @@ -1,16 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -Dataset Name,Name of the dataset,True,_None_,RNA Sequencing of Lung Cancer Samples 2021 -Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",True,unique,GSE56789 -Dataset Description,Description of the dataset.,False,_None_,"This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages." -Dataset Design,The overall design of the dataset.,False,_None_,"'Cross-sectional' to compare gene expression in healthy vs. tumor tissues, or 'Time-series' to observe changes during treatment." -Dataset Url,The url of where the dataset is stored.,True,url,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789 -Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,True,url, -[Dataset Assay](../valid_values/dataset.md#attribute-dataset-assay),"The assay the dataset is representative of. Multiple values permitted, comma separated.",True,list like,RNA Sequencing -[Dataset Species](../valid_values/dataset.md#attribute-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Homo sapiens -[Dataset Tumor Type](../valid_values/dataset.md#attribute-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Glioblastoma -[Dataset Tissue](../valid_values/dataset.md#attribute-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Lung -[Dataset File Formats](../valid_values/dataset.md#attribute-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,"""AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS.""" -Dataset View,The denormalized manifest for dataset submission.,False,_None_,"Table, Spreadsheet" -[Dataset Grant Number](../valid_values/dataset.md#attribute-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 -Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",False,list like,31245678 -DatasetView_id,A unique primary key that enables record updates using schematic.,True,unique,DatasetView_67890 diff --git a/modules/education/template.csv b/modules/education/template.csv deleted file mode 100644 index 388ae79f..00000000 --- a/modules/education/template.csv +++ /dev/null @@ -1,26 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -Educational Resource,Manifest for describing educational resources.,False,_None_,"""Online Tutoring Platform""" -Resource Title,Title of the item.,True,str,"""Introduction to Biology""" -Resource Link,The URL that links to the item.,True,url,https://www.example.com/resource_page.html -Resource Doi,The Digital Object Identifier (DOI) associated with the educational resource.,True,url, -[Resource Topic](../valid_values/education.md#attribute-resource-topic),"General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.",True,list like,Metabolism -[Resource Activity Type](../valid_values/education.md#attribute-resource-activity-type),The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.,True,list like,Simulation -[Resource Primary Format](../valid_values/education.md#attribute-resource-primary-format),"The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.",True,list like,Video -[Resource Intended Use](../valid_values/education.md#attribute-resource-intended-use),The purpose of the material for education. Multiple values should be provided as a comma separated list.,True,list like,"""Curriculum/Instruction""" -[Resource Primary Audience](../valid_values/education.md#attribute-resource-primary-audience),The intended end user audience for the resource. Multiple values should be provided as a comma separated list.,True,list like,Teacher -[Resource Educational Level](../valid_values/education.md#attribute-resource-educational-level),"Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.",True,list like,High School -Resource Description,Abstract or summary of the item.,True,str,"""This comprehensive e-book introduces readers to the world of biology""" -Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,True,list like,Smithsonian Institution -[Resource Language](../valid_values/education.md#attribute-resource-language),Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,True,list like::regex search [a-z]{2},en -Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,True,list like,"John Smith, Jane Doe, XYZ Corporation" -[Resource Grant Number](../valid_values/education.md#attribute-resource-grant-number),"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.",True,list like,CA217655 -Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",False,list like,Cancer Research -[Resource License](../valid_values/education.md#attribute-resource-license),"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.",False,list like,Apache-2.0 -Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",False,str,The software application requires 2GB of RAM and 20GB of hard drive space. It also needs a graphic card supporting OpenGL 2.0. The system must run on Windows 10 or higher. -Resource Alias,"A unique identifier (DOI, Synapse ID) for the item, if it exists.",False,unique,Nan -Resource Internal Identifier,"The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.",False,list like,ResourceID_56789 -[Resource Media Accessibility](../valid_values/education.md#attribute-resource-media-accessibility),"Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.",False,list like,"The educational video on the website provides 'Captions' for viewers with hearing impairments, making it an excellent example of 'Resource Media Accessibility'." -[Resource Access Hazard](../valid_values/education.md#attribute-resource-access-hazard),"Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.",False,list like,"An example for the attribute 'Resource Access Hazard' could be a website for a video game which includes flashing images and intense sequences of motion. The site also uses loud sounds and high intensity simulations which some users can find distressing or harmful, particularly if they have conditions such as epilepsy or severe motion sickness. Therefore, the website has a potential ""Resource Access Hazard.""" -Resource Dataset Alias,"URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.",False,list like,Nan -Resource Tool Link,"URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.",False,list like,https://www.khanacademy.org/ -EducationalResource_id,A unique primary key that enables record updates using schematic.,True,unique,ER_4567 diff --git a/modules/file/template.csv b/modules/file/template.csv deleted file mode 100644 index 2f38e943..00000000 --- a/modules/file/template.csv +++ /dev/null @@ -1,23 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -File Description,Description of the file.,False,str,"""CSV file containing gene expression data for breast cancer""" -File Design,The overall design of the dataset or file.,False,str,CSV -File Url,The url of where the file is stored.,True,url,[https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) -[File Assay](../valid_values/file.md#attribute-file-assay),The assay the file is representative of.,True,_None_,RNA Sequencing -[File Level](../valid_values/file.md#attribute-file-level),The processing level the file can be mapped to. ,True,_None_,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" -[File Level](../valid_values/file.md#attribute-file-level),The processing level the file can be mapped to. ,True,_None_,"Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files)" -[File Species](../valid_values/file.md#attribute-file-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Human -[File Tumor Type](../valid_values/file.md#attribute-file-tumor-type),"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.",False,list like,Breast Carcinoma -[File Tissue](../valid_values/file.md#attribute-file-tissue),"Tissue type(s) associated with the file. Multiple values permitted, comma separated.",False,list like,Breast -File View,The denormalized manifest for file submission.,False,_None_,List View -File View,The denormalized manifest for file submission.,False,_None_,List View -FileView_id,A unique primary key that enables record updates using schematic.,True,unique,"""FileView_123456""" -File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,False,str, -[File Longitudinal Event Type](../valid_values/file.md#attribute-file-longitudinal-event-type),"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",False,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." -[File Longitudinal Event Type](../valid_values/file.md#attribute-file-longitudinal-event-type),"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)",False,str,"A valid value for 'File Longitudinal Event Type' might be ""FileCreated"", ""FileModified"", ""FileDeleted"", or ""FileRenamed""." -File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",False,int,10-9876543210-12 -File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,False,str,Seconds -File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,False,num,"""2 hours 45 minutes""" -File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,False,num,"""120 minutes""" -[File Format](../valid_values/file.md#attribute-file-format),The format of the file described by this entry.,True,_None_,CSV -File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",True,unique,"""Breast_Cancer_Gene_Expression.csv""" -[File Anatomic Site](../valid_values/file.md#attribute-file-anatomic-site),The anatomic site associated with the data contained in this file.,True,list like,"Brain stem, Cervix uteri" diff --git a/modules/grant/template.csv b/modules/grant/template.csv deleted file mode 100644 index 17b89f12..00000000 --- a/modules/grant/template.csv +++ /dev/null @@ -1,18 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -Grant Name,Name of the grant,True,_None_,CA202177: Mechanistic Modeling of Cancer Cell Migration -Grant Number,"Number of the grant (i.e. ""CA------"" format)",True,regex search ^CA\\d{6}$,CA202177 -Grant Abstract,Abstract for the grant,True,_None_,This study investigates the mechanisms of cancer cell migration through advanced modeling techniques. -[Grant Type](../valid_values/grant.md#attribute-grant-type),Type of grant,True,_None_,R01 -Grant View,The denormalized manifest for grant submission.,False,_None_,Public Profile View -[Grant Theme Name](../valid_values/grant.md#attribute-grant-theme-name),Theme(s) associated with the grant. 1...*,True,list like,"Computational Model Development, Mechano-genetics" -[Grant Institution Name](../valid_values/grant.md#attribute-grant-institution-name),The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,True,list like,"Harvard University, Massachusetts Institute of Technology" -[Grant Institution Alias](../valid_values/grant.md#attribute-grant-institution-alias),The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,True,list like,"Harvard, MIT" -Grant Investigator,Investigator(s) associated witht the grant. 1...*,True,list like,"Dr. John Smith, Dr. Jane Doe" -[Grant Consortium Name](../valid_values/grant.md#attribute-grant-consortium-name),Consortium(s) associated with the grant. 1...1,True,_None_,CSBC -GrantView_id,A unique primary key that enables record updates using schematic.,True,unique,GrantView_12345 -Grant Synapse Team,"The Synapse team associated with the grant, created by the MC2 Center",False,url,https://www.synapse.org/#!Team:123456 -Grant Synapse Project,"The Synapse project associated with the grant, created by the MC2 Center",False,url,https://www.synapse.org/#!Synapse:syn12345678 -Grant Start Date,The start date of the grant YYYY-MM-DD format,True,date,2021-01-01 -NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,True,url,https://reporter.nih.gov/project-details/12345678 -Duration of Funding,"Duration of the funding period, in years",False,int,5 -Embargo End Date,Date at which an embargo on related resources had lifted,False,date,2026-01-01 diff --git a/modules/person/template.csv b/modules/person/template.csv deleted file mode 100644 index 7a185b24..00000000 --- a/modules/person/template.csv +++ /dev/null @@ -1,20 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -Name,Name of the individual,True,_None_,John Doe -Alternative Names,"Other ways the individual's name is displayed. Multiple values permitted, comma separated.",False,list like,"Bob, Bobby, Robert" -Email,Email address of the individual,False,_None_,johndoe@example.com -Url,"URL, e.g., individual's home page address",False,_None_,https://www.google.com -Orcid Id,Unique identifier (ORCID ID) of the individual,False,regex search \\d{4}\\-\\d{4}\\-\\d{4}\\-\\d{3}(\\d|X),0000-0002-1825-0097 -Synapse Profile Id,Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page. ,False,unique,SP12345678 -Last Known Institution,Last known institutional affiliation of the individual.,True,_None_,Harvard University -[Working Group Participation](../valid_values/person.md#attribute-working-group-participation),"CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.",True,list like,Cell and Tissue Mechanics -[Chair Roles](../valid_values/person.md#attribute-chair-roles),"Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.",True,list like,Steering Committee -[Consent For Portal Display](../valid_values/person.md#attribute-consent-for-portal-display),Consent from individual to display Person information in the CCKP,True,_None_,Yes -[Portal Display](../valid_values/person.md#attribute-portal-display),Display content in CCKP,True,_None_,TRUE -Person View,The denormalized manifest for person submission.,False,_None_,Public Profile View -[Person Grant Number](../valid_values/person.md#attribute-person-grant-number),"Grant number(s) associated with the person. Multiple values permitted, comma separated.",True,list like,CA202177 -[Person Consortium Name](../valid_values/person.md#attribute-person-consortium-name),"Consortium(s) associated with the person. Multiple values permitted, comma separated.",True,list like,PDMC -Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",False,list like,"23761710,23761712,23762511" -Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",False,list like,GSE12345 -Person Tools,"A list of the tool names associated with the person. Multiple values permitted, comma separated.",False,list like,"R Studio, Python, Jupyter Notebook" -Person Educational Resources,"A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.",False,list like,Nan -PersonView_id,A unique primary key that enables record updates using schematic.,True,unique,PersonView_12345 diff --git a/modules/publication/template.csv b/modules/publication/template.csv deleted file mode 100644 index 7ff6c88d..00000000 --- a/modules/publication/template.csv +++ /dev/null @@ -1,18 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,False,unique,10.1016/j.cell.2016.02.013 -Publication Journal,The name of the periodical publication in which the publication was published.,True,_None_,The New England Journal of Medicine -Pubmed Id,The PubMed identifier associated with the publication.,True,unique,26571401 -Pubmed Url,Pubmed URL for the publication,True,url,https://www.ncbi.nlm.nih.gov/pubmed/12345678 -Publication Title,Title of the publication,True,_None_,The New York Times -Publication Year,Year of the publication,True,_None_,2018 -Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",False,list like,"Cancer Pathways, Inflammation, Tumor Microenvironment" -Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",True,list like,"Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter" -Publication Abstract,The abstract of the publication.,True,_None_,Nan -[Publication Assay](../valid_values/publication.md#attribute-publication-assay),"Assay(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,In Vivo Bioluminescence -[Publication Tumor Type](../valid_values/publication.md#attribute-publication-tumor-type),"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Acute Lymphoblastic Leukemia -[Publication Tissue](../valid_values/publication.md#attribute-publication-tissue),"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.",True,list like,Brain -[Publication Accessibility](../valid_values/publication.md#attribute-publication-accessibility),Whether there are non-monetary restrictions on accessing an the publication.,True,_None_,Open Access -Publication View,The denormalized manifest for publication submission.,False,_None_,Online -[Publication Grant Number](../valid_values/publication.md#attribute-publication-grant-number),"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.",True,list like,CA202123 -Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",False,list like,"GSE45678, DOI:10.1000/exampledataset" -PublicationView_id,A unique primary key that enables record updates using schematic.,True,unique,PublicationView_45678 diff --git a/modules/sharingPlans/template.csv b/modules/sharingPlans/template.csv deleted file mode 100644 index 09d27e21..00000000 --- a/modules/sharingPlans/template.csv +++ /dev/null @@ -1,29 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_, -DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,False,_None_, -DSP Dataset Name,Name of the dataset,True,str,DSP_Dataset_Lung_Research_2021 -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",False,unique,Syn123456 -DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",False,unique,Syn123456 -[DSP Dataset Assay](../valid_values/sharingPlans.md#attribute-dsp-dataset-assay),"The type of data contained in this group of files. Multiple values permitted, comma separated.",True,list like,3D Bioprinting -[DSP Dataset Species](../valid_values/sharingPlans.md#attribute-dsp-dataset-species),"The species the data was collected on. Multiple values permitted, comma separated.",True,list like,Asian Elephant -[DSP Dataset Tumor Type](../valid_values/sharingPlans.md#attribute-dsp-dataset-tumor-type),"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.",False,list like,Lung Carcinoma -[DSP Dataset Tissue](../valid_values/sharingPlans.md#attribute-dsp-dataset-tissue),"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.",False,list like,Brain -[DSP Dataset File Formats](../valid_values/sharingPlans.md#attribute-dsp-dataset-file-formats),"A list of file formats associated with the dataset. Multiple values permitted, comma separated.",False,list like,CSV -DataDSP_id,A unique primary key that enables record updates using schematic.,True,unique,DataDSP_56789 -[DSP Dataset Level](../valid_values/sharingPlans.md#attribute-dsp-dataset-level),The level of processing associated with the dataset.,False,list like,Level 3 -[DSP Dataset Level](../valid_values/sharingPlans.md#attribute-dsp-dataset-level),The level of processing associated with the dataset.,False,list like,Level 3 -DSP Number of Files,The number of files that will be uploaded as part of this dataset.,False,num,25 -DSP Number of Samples,The number of biospecimens associated with the files included in the dataset,False,num,50000 -DSP Number of Participants,The number of individuals or model organisms from which samples were collected to generate the dataset.,False,num,12 -DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),False,num,16 GB -DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",True,date,2022-12-01 -DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,False,date,01/25/2023 -[DSP Dataset Grant Number](../valid_values/sharingPlans.md#attribute-dsp-dataset-grant-number),"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.",True,list like,CA209971 -DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",False,url,https://www.example.com/dataset/dsp1234 -DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",False,url,https://www.example.com/dataset/dsp1234 -[DSP Data Use Codes](../valid_values/sharingPlans.md#attribute-dsp-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ",False,list like,"If a research institution is using certain data for health and medicine-based studies, then their DSP Data Use Codes could be ""HMB""." -DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,False,regex match syn\\d+,"DSP IRB Form V2.0, 2020" -DSP Dataset Description,A text description of the files contained in this dataset.,False,str,A quick description of your data sharing plan. -DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,False,str,/home/user/datasets/dsp_output -DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,False,list like,https://example.com/metadata-template-1 -DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,False,list like,https://example.com/metadata-template-1 diff --git a/modules/study/template.csv b/modules/study/template.csv deleted file mode 100644 index f4a26642..00000000 --- a/modules/study/template.csv +++ /dev/null @@ -1,18 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -Study,Studies associated with a grant,False,_None_,ProjectView_45678 -Study,Studies associated with a grant,False,_None_,ProjectView_45678 -Study Name,Name of the study,True,str,Effects of Diet and Exercise on Cancer -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",True,str,Analysis of Cancerous Cell Response during Exercise -Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,True,list like,Dr. Jane Smith -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",False,str,Data from this study can be used for future research purposes under the conditions that all information is properly cited and referenced. -Study_id,A unique primary key that enables record updates using schematic.,True,unique,STUDY_2021_01Biology -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,True,int,5000 -[Study De-identification Method Type](../valid_values/study.md#attribute-study-de-identification-method-type),General description of the de-identification method,True,_None_,Manual -[Study De-identification Method Type](../valid_values/study.md#attribute-study-de-identification-method-type),General description of the de-identification method,True,_None_,Manual -Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,False,str,"All personal identifiable information such as names, addresses, and identification numbers were removed from the data. The dates were also shifted to a random point in the future to preserve the temporal relationships but without revealing the actual dates. The datasets were further reviewed and verified by a privacy officer to ensure all participants' identity is completely unidentifiable." -Study De-identification Method Software,Software that was used to de-identify the images (if used),False,str,Safe Harbor Method Software -Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,False,str,phs000424.v7.p2 -[Study License](../valid_values/study.md#attribute-study-license),Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,False,_None_,CC BY-NC 4.0 -[Study Data Use Codes](../valid_values/study.md#attribute-study-data-use-codes),"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes",False, list like,NCU -[Study Index Date](../valid_values/study.md#attribute-study-index-date),"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.",False,_None_,Diagnosis Date -[Study Index Date](../valid_values/study.md#attribute-study-index-date),"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.",False,_None_,Diagnosis Date diff --git a/modules/tool/template.csv b/modules/tool/template.csv deleted file mode 100644 index cf7c2987..00000000 --- a/modules/tool/template.csv +++ /dev/null @@ -1,47 +0,0 @@ -Attribute,Description,Required,Validation Rules,Examples -[Tool Accessibility](../valid_values/tool.md#attribute-tool-accessibility),Whether there are non-monetary restrictions on accessing an online service.,False,_None_,Nan -Tool Cmd,"Relevant command, command-line fragment, or option for executing this function/running the tool in this mode.",False,_None_,export GIT_TRACE=1 -Tool Compute Requirements,"Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime).",False,"list like, url","Python, pip, pandas, matplotlib" -[Tool Cost](../valid_values/tool.md#attribute-tool-cost),Monetary cost of acquiring the software.,False,_None_,Commercial -Tool Date Last Modified,"The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information.",False,date,11/04/2021 15:30:45 -Tool Description,Textual description of the tool.,True,_None_,This is a Python tool that ... -Tool Documentation Note,Comment about the documentation.,False,_None_,This software comes with comprehensive user manuals and FAQs to assist in navigation and troubleshooting. Regular updates to the documentation are provided based on software upgrades. -[Tool Documentation Type](../valid_values/tool.md#attribute-tool-documentation-type),"Type of documentation that is linked to. Multiple values permitted, comma separated.",False,list like,API Documentation -Tool Documentation Url,Link to documentation on the web for the tool.,False,_None_,https://docs.example.com/ -Tool Download Note,Comment about the download.,False,_None_,"Before downloading this tool, ensure your device has adequate storage space and meets the minimum system requirements. Also, our tools may require specific software or apps to function properly. Please refer to our website for detailed information about the required software." -[Tool Download Type](../valid_values/tool.md#attribute-tool-download-type),"The type of data, information, or system that is obtained when the link is resolved.",False,_None_,API Specification -Tool Download Url,Link to download (or repo providing a download) for the software.,False,_None_,https://example.com/tool-download/version2.0 -Tool Download Version,Version information (typically a version number) of the software applicable to this download.,False,_None_,1.0.3 -Tool Entity Name,Name of the entities that may be credited,False,list like,"Python, pip" -[Tool Entity Role](../valid_values/tool.md#attribute-tool-entity-role),"Role performed by entity that is credited, e.g. β€œDeveloper”",True,list like,"Developer, Maintainer, Provider, Documentor, Contributor" -[Tool Entity Type](../valid_values/tool.md#attribute-tool-entity-type),"Types of entities that may be credited, e.g. β€˜Person’.",True,list like,Person -Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",False,_None_,The tool is used to programmatically ... -[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 -[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 -Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",True,url,https://www.example.com/ -[Tool Input Data](../valid_values/tool.md#attribute-tool-input-data),"Type of primary input data. Multiple values permitted, comma separated.",True,list like,DNA Sequence -[Tool Input Format](../valid_values/tool.md#attribute-tool-input-format),"Allowed format(s) of the input data. Multiple values permitted, comma separated.",True,list like,CSV -[Tool Language](../valid_values/tool.md#attribute-tool-language),"Name of programming language the software source code was written in. Multiple values permitted, comma separated.",False,list like,Python -[Tool License](../valid_values/tool.md#attribute-tool-license),"Software or data usage license. Multiple values permitted, comma separated.",False,list like,Apache-2.0 -Tool Link Note,Comment about the link.,False,_None_,This tool cannot be accessed without a valid institutional login. -[Tool Link Type](../valid_values/tool.md#attribute-tool-link-type),"The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated.",False,list like,Social Media -Tool Link Url,A link of some relevance to the software (URL).,False,_None_,https://www.example.com/tool-info.html -Tool Name,Canonical tool name provided by the tool developer or service provider.,True,unique,Adobe Photoshop -[Tool Operating System](../valid_values/tool.md#attribute-tool-operating-system),"The operating system supported by a downloadable software package. Multiple values permitted, comma separated.",False,list like,Linux -[Tool Operation](../valid_values/tool.md#attribute-tool-operation),"The basic operation(s) performed by this software function. Multiple values permitted, comma separated.",True,list like,DNA Barcoding -[Tool Output Data](../valid_values/tool.md#attribute-tool-output-data),"Type of primary output data. Multiple values permitted, comma separated.",True,list like,"Accession, Alignment,Biological Model ID" -[Tool Output Format](../valid_values/tool.md#attribute-tool-output-format),"Allowed format(s) of the output data. Multiple values permitted, comma separated.",True,list like,FASTQ -Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",False,list like,"Python 3.7 or above, Django 2.2 or above, Postgresql 12.0 or above." -[Tool Package Dependencies Present](../valid_values/tool.md#attribute-tool-package-dependencies-present),Indicates whether the required package dependencies for tool are present.,True,_None_,True -[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 -[Tool Grant Number](../valid_values/tool.md#attribute-tool-grant-number),"Grant number associated with the tool's development. Multiple values permitted, comma separated.",True,list like,CA209975 -Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,False,int,26760201 -Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,True,date,"January 5, 2022" -[Tool Topic](../valid_values/tool.md#attribute-tool-topic),"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.",False,list like,Bioinformatics -[Tool Type](../valid_values/tool.md#attribute-tool-type),"A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated.",False,list like,Command-Line Tool -Tool Version,Version information (typically a version number) of the software applicable to this entry.,False,_None_,3.2.1 -Tool View,The denormalized manifest for tool submission.,False,_None_,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." -Tool View,The denormalized manifest for tool submission.,False,_None_,"In a software interface, the 'Tool View' attribute might be set to ""Detail View"" or ""Thumbnail View""." -ToolView_id,A unique primary key that enables record updates using schematic.,True,unique,ToolView_6749 -Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,True,url,https://doi.org/10.1234/example1 -Tool Doi,The Digital Object Identifier (DOI) associated with the computational tool.,True,url,https://doi.org/10.1234/example1 diff --git a/nav.yml b/nav.yml new file mode 100644 index 00000000..6d22fdb0 --- /dev/null +++ b/nav.yml @@ -0,0 +1,15 @@ +Home: + - index.md + - home/tutorial.md +Data Models: + - Dataset Data Model: model/dataset.md + - Dataset Sharing Plan: model/DataDSP.md + - Education Resource Data Model: model/education.md + - File Data Model: model/file.md + - Grant Data Model: model/grant.md + - Person Data Model: model/person.md + - Publication Data Model: model/publication.md + - Study Data Model: model/study.md + - Tool Data Model: model/tool.md +Standard Terms: {} +Contributing to the Data Model: contributing.md diff --git a/scripts/hooks.py b/scripts/hooks.py index 74e1d4a6..0f5c797d 100644 --- a/scripts/hooks.py +++ b/scripts/hooks.py @@ -1,66 +1,161 @@ -from os.path import join +from os.path import getsize, isfile, join + import pandas as pd +import yaml -DATA_MODELS = [ - "dataset", - "sharingPlans", - "education", - "file", - "grant", - "person", - "publication", - "study", - "tool", -] +# --- Configuration --- +# Data models to display on the documentation site: filename -> page title +DATA_MODELS = { + "dataset": "Dataset", + "sharingPlans": "Dataset Sharing Plan", + "education": "Education Resource", + "file": "File", + "grant": "Grant", + "person": "Person", + "publication": "Publication", + "study": "Study", + "tool": "Tool", +} + +# Columns to render for the full field reference tables. COLS_TO_RENDER = [ - 'Attribute', - 'Description', - 'Required', - 'Validation Rules', - 'Examples' + "Attribute", + "Description", + "Required", + "Validation Rules", + "Examples", ] -def on_pre_build(config, **kwargs) -> None: - """Pre-process template files. - - Desired markdown: render model template so that +MAPPING_FILENAME = "mapping.yaml" +NAVIGATION_FILENAME = "nav.yml" +ANNOTATIONS_FILENAME = "annotationProperty.csv" +EXAMPLE_FILENAME = "exampleColumn.csv" +REFERENCE_FILENAME = "reference.csv" + + +# --- Helper Functions --- +def _create_markdown_link(attribute: str, model: str) -> str: + """Create markdown link to list of valid values for the given attribute.""" + link_prefix = f"../valid_values/{model}.md#attribute" + slug = attribute.lower().replace(" ", "-") + return f"[{attribute}]({link_prefix}-{slug})" + + +def _format_validation_rules(col: pd.Series) -> pd.Series: + """Format validation rules, replacing empty strings with '_None_'.""" + return col.str.replace(r"\\", r"\\\\", regex=True).replace("", "_None_") + + +# --- Core logic functions --- +def generate_linked_table(model: str): + """Generate CSV with linked attributes to list of valid values. + + Desired markdown look: render model reference table so that - it is known which attributes require valid values - clicking on attribute will direct to valid values table """ + parent = join("modules", model) + annotations_file = join(parent, ANNOTATIONS_FILENAME) + example_file = join(parent, EXAMPLE_FILENAME) + reference_file = join(parent, REFERENCE_FILENAME) + + # Read both annotation properties and examples + annotation_df = pd.read_csv(annotations_file, quoting=1).fillna("") + examples_df = pd.read_csv(example_file, quoting=1).fillna("") + + # First select only the columns we want from annotation_df + table = annotation_df[[ + "Attribute", + "Description", + "Required", + "Validation Rules", + "Valid Values", + ]] + + # Then add the Example column and rename it to Examples + table = table.merge( + examples_df[["Attribute", "Example"]], + on="Attribute", + how="left", + ).rename(columns={"Example": "Examples"}) + + # If attribute has a list of valid values, create a link. + table["Attribute"] = table.apply( + lambda row: ( + _create_markdown_link(row["Attribute"], model) + if row["Valid Values"] + else row["Attribute"] + ), + axis=1, + ) + + # Fix any remaining rendering issues, then output table as CSV. + table["Validation Rules"] = _format_validation_rules(table["Validation Rules"]) + table[COLS_TO_RENDER].to_csv(reference_file, index=False) + + +def generate_valid_values_markdown(model: str): + """Generate docs page for standard terms of the given data model.""" + dest_parent_dir = join("docs", "valid_values") + + with open(join("modules", MAPPING_FILENAME)) as f, \ + open(join(dest_parent_dir, f"{model}.md"), "w") as md: + mapping = yaml.safe_load(f) + + # Create a section in the docs page for each attribute that has a list + # of standard terms. + for attribute in mapping.get(model, {}): + name = attribute.get("name") + valid_values_src = attribute.get("src") + + md.write(f"## Attribute: `{name}`\n\n") + md.write( + '
\n\n' + ) + md.write( + "{{ read_csv('" + + valid_values_src + + "', header=0, names=['Valid Value','Description'], usecols=['Valid Value','Description'], tablefmt='html') }}\n\n" + ) + md.write("
\n\n\n") + + +# --- MkDocs event hooks --- +def on_pre_build(config): + """Pre-process docs setup for the data models of interest. + + For each model, generate: + - a table CSV that links an attribute to its list of standard terms + - a docs page of the aforementioned list of standard terms + """ for model in DATA_MODELS: - parent = join("modules", model) - # Read both annotation properties and examples - annotation_df = pd.read_csv(join(parent, 'annotationProperty.csv'), quoting=1).fillna("") - examples_df = pd.read_csv(join(parent, 'exampleColumn.csv'), quoting=1).fillna("") - - # First select only the columns we want from annotation_df - df = annotation_df[['Attribute', 'Description', 'Required', 'Validation Rules', 'Valid Values']] - - # Then add the Example column and rename it to Examples - df = df.merge( - examples_df[['Attribute', 'Example']], - on='Attribute', - how='left' - ).rename(columns={'Example': 'Examples'}) - - # If attribute has a list of valid values, create a link. - for _, row in df[df['Valid Values'].ne("")].iterrows(): - attr_link = "[" + row['Attribute'] + ( - f"](../valid_values/{model}.md#attribute-" - f"{row['Attribute'].lower().replace(' ', '-')})") - df.at[_, 'Attribute'] = attr_link - - # For any validation rules with a regex, replace `\` with `\\` - # for proper rendering. - df['Validation Rules'] = ( - df['Validation Rules'] - .replace(r"\\", r"\\\\", regex=True)) - - # Indicate "None" if there are no validation rules for the attribute. - df.loc[df['Validation Rules'] == "", "Validation Rules"] = "_None_" - - # Drop the Valid Values column before final output - df = df.drop(columns=['Valid Values']) - - df[COLS_TO_RENDER].to_csv(join(parent, 'template.csv'), index=False) \ No newline at end of file + generate_linked_table(model) + generate_valid_values_markdown(model) + + +def on_files(_, config): + """Update docs site navigation after all files are gathered and generated. + + !!! note + This is a hacky solution to updating config.nav to include the auto- + generated markdown pages created by generate_valid_values_markdown(). + """ + with open(NAVIGATION_FILENAME) as f: + nav_mapping = yaml.safe_load(f) + + # Initial setup for config.nav. + config["nav"] = nav_mapping + config["nav"]["Standard Terms"] = { + "All terms": "valid_values/all_terms.md", + "Terms by model": [], + } + + # Dynamically add valid_values docs page for each data model to config.nav + # if the docs page exists and has contents. + for model, page_title in DATA_MODELS.items(): + docs_page = join("valid_values", f"{model}.md") + if isfile(join("docs", docs_page)) and getsize(join("docs", docs_page)) > 0: + config["nav"]["Standard Terms"]["Terms by model"].append( + {page_title: docs_page} + ) From 83cc6c7bfb4b759ff3d7888e8b4dfb531b262df3 Mon Sep 17 00:00:00 2001 From: Verena Chung <9377970+vpchung@users.noreply.github.com> Date: Fri, 4 Apr 2025 15:07:04 -0700 Subject: [PATCH 089/106] update readme --- README.md | 80 +------------------------------------------------------ 1 file changed, 1 insertion(+), 79 deletions(-) diff --git a/README.md b/README.md index 5ea88640..41da7ee1 100644 --- a/README.md +++ b/README.md @@ -103,86 +103,8 @@ Thank you helping us continuously improve the MC2 Center data models! To contribute, please read our [contributing guidelines] on the docs site. -## Setup and Deployment Instructions - -To get started with this project, follow these steps: - -### 1. Install Python and Pip -Ensure you have Python installed on your system. If you don’t have it installed: - -- Visit [Python's official website](https://www.python.org/) and download the latest stable release. -- During installation, ensure you check the option to **Add Python to PATH**. - -Next, ensure that `pip` is also installed and configured. You can check by running: - -```bash -python --version -pip --version -``` - -If `pip` is missing, you can install it by downloading and running `get-pip.py` from [pip's official site](https://pip.pypa.io/en/stable/installation/). - -### 2. Set Up a Virtual Environment -Create a virtual environment to isolate dependencies for this project. - -```bash -python -m venv venv -``` - -This command creates a virtual environment named `venv` in your project directory. - -Activate the virtual environment: - -- On macOS/Linux: - ```bash - source venv/bin/activate - ``` -- On Windows: - ```cmd - venv\Scripts\activate - ``` - -Once activated, your terminal prompt should show the environment name (`venv`). - -### 3. Install Dependencies -With the virtual environment activated, install the necessary packages: - -```bash -pip install mkdocs -pip install mkdocs-material -pip install mkdocs-table-reader-plugin -``` - -### 4. Preview the Documentation Site -Run the following command to start a local server and preview the documentation site: - -```bash -mkdocs serve -``` - -Open the displayed URL (usually `http://127.0.0.1:8000/`) in your browser to view the site. - -### 5. Submit Built Pages to GitHub -To publish the documentation site on GitHub Pages, follow these steps: - -1. Build the static site files: - ```bash - mkdocs build - ``` - This will generate a `site/` directory containing the built HTML files. - -2. Commit the built files to the `gh-pages` branch: - ```bash - git add site/ - git commit -m "Build site for deployment" - git push origin `git subtree split --prefix site master`:gh-pages --force - ``` - -3. Verify that the site is live at your GitHub Pages URL (e.g., `https://.github.io/`). - - [Cancer Complexity Knowledge Portal]: https://cancercomplexity.synapse.org/ [open a ticket]: https://github.com/mc2-center/data-models/issues/new?assignees=aditigopalan&labels=bug&projects=&template=bug-report.md&title=%5Bbug%5D+ [Data Curator App (DCA)]: https://dca.app.sagebionetworks.org/ -[Contributing guidelines]: https://mc2-center.github.io/data-models/contributing/ \ No newline at end of file +[Contributing guidelines]: https://mc2-center.github.io/data-models/contributing/ From b50df891166b5cc964771c6f34f5fd477484a8c7 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 8 Apr 2025 14:36:24 -0700 Subject: [PATCH 090/106] Update release_workflow.sh Limit template generation to only those used in GitHub docs Don't need to save JSON schemas - they are invalid and if they are needed, they can be built later Remove -r flag from rm, to make sure we don't delete folders on accident Save links generated by schematic manifest get -s to txt file --- release_workflow.sh | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/release_workflow.sh b/release_workflow.sh index 0090fee6..2cc0c53e 100644 --- a/release_workflow.sh +++ b/release_workflow.sh @@ -17,7 +17,7 @@ config="$1" homedir="$2" convert="$3" -datatypes="DataDSP Individual Study Model FileView ImagingChannel ImagingLevel1 ImagingLevel2 ImagingLevel3Image ImagingLevel3Segments ImagingLevel4 SequencingLevel1 SequencingLevel2 SequencingLevel3 SequencingRNALevel1 10xVisiumAuxiliaryFiles 10xVisiumRNALevel1 10xVisiumRNALevel2 10xVisiumRNALevel3 10xVisiumRNALevel4 Biospecimen PersonView PublicationView GrantView ToolView EducationalResource NanoStringGeoMxAuxiliaryFiles NanoStringGeoMxDSPLevel1 NanoStringGeoMxDSPLevel2 NanoStringGeoMxDSPLevel3 NanoStringGeoMxDSPImaging NanoStringGeoMXROISegmentAnnotation DatasetView ProjectView" +datatypes="DataDSP Study FileView PublicationView GrantView ToolView EducationalResource DatasetView PersonView" cd "$homedir" @@ -31,9 +31,9 @@ fi for i in $datatypes; do - schematic manifest -c "$config" get -dt "$i" -o "$homedir/templates/$i.csv" -s || continue + schematic manifest -c "$config" get -dt "$i" -o "$homedir/templates/$i.csv" -s >> release_output.txt || continue done #clean up leftover files -mv *.schema.json json_schemas -rm -r *.manifest.csv \ No newline at end of file +rm *.schema.json +rm *.manifest.csv \ No newline at end of file From 2b3e67e096a12c6e371a5df1f272b0c4de850df2 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 8 Apr 2025 14:37:39 -0700 Subject: [PATCH 091/106] Update .gitignore Ignore release_output.txt - we can change this if we decide to integrate google sheet links into our docs later --- .gitignore | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 7923d056..cebd28af 100644 --- a/.gitignore +++ b/.gitignore @@ -48,4 +48,7 @@ great_expectations/ **/**/.DS_Store # MKDocs -scripts/__pycache__ \ No newline at end of file +scripts/__pycache__ + +# Release workflow outputs +release_output.txt From b32b5f9486580dbdcdc2c2bc9601639650ff4ce7 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 8 Apr 2025 14:38:34 -0700 Subject: [PATCH 092/106] Make CSV and convert to JSON-LD schematic 24.12.1 --- mc2.model.csv | 18 +- mc2.model.jsonld | 117870 +++++++++++++++++++++++--------------------- 2 files changed, 61169 insertions(+), 56719 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 8f44c4ac..275be452 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -53,13 +53,27 @@ Website,Website of research consortium,,,TRUE,,,,,url Consortium_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique community,The Sage Bionetworks project or initiative with which the dataset is associated.,,,FALSE,,,,Synapse Data Catalog,str description,A text description of the dataset. Can be identifical to Dataset Description.,,,FALSE,,,,Synapse Data Catalog,str -contributors,The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.,,,FALSE,,,,Synapse Data Catalog,list like -keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,FALSE,,,,Synapse Data Catalog,list like +contributor,"Organization(s), insitution(s), or person(s) that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.",,,FALSE,,,,Synapse Data Catalog,list like +keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,TRUE,,,,Synapse Data Catalog,list like individuals,"The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples",,,FALSE,,,,Synapse Data Catalog,int link,"The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.",,,FALSE,,,,Synapse Data Catalog,url croissant,A Synapse url where the croissant file associated with this dataset is stored.,,,FALSE,,,,Synapse Data Catalog,url DataCatalog,The manifest used to describe datasets for the Synapse Data Catalog.,,"Component, DataCatalog_id, community, description, contributors, keywords, individuals, link, croissant",FALSE,,,Study,Synapse Data Catalog, DataCatalog_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,MC2,unique +accessType,Access type for the dataset.,"Anonymous, Open, Controlled, Private",,FALSE,,,,schema.org/dataset,str +alternateName,An altername name that can be used for search and discovery improvement.,,,FALSE,,,,schema.org/dataset,str +conditionsOfAccess,"Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown.",,,FALSE,,,,schema.org/dataset,str +countryOfOrigin,Origin of individuals from which data were generated. Omit if not applicable/unknown.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,schema.org/dataset,list like +creator,Organization or person that is creator of the dataset. Default is the PI of the project and/or the user who created all files in the dataset.,,,TRUE,,,,schema.org/dataset,str +dataUseModifiers,"List of data use ontology (DUO) terms that are true for dataset, which describes the allowable scope and terms for data use. Omit property if not applicable/unknown.","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,schema.org/dataset,list like +datePublished,Date data were published/available on Synapse.,,,FALSE,,,,schema.org/dataset,int +funder,The entity(ies) responsible for funding the data contributors.,NIH,,FALSE,,,,schema.org/dataset,list like +includedInDataCatalog,Link(s) to known data catalog(s) the dataset is included in.,,,FALSE,,,,schema.org/dataset,str +license,"The terms and conditions underwhich the data are allowed to be accessed and used. Unless information for license is clear, this should default to UNKNOWN.","CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,schema.org/dataset,str +measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,FALSE,,,,schema.org/dataset,list like +species,"Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,schema.org/dataset,list like +subject,Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme.,,,FALSE,,,,schema.org/dataset,list like +title,The name of the dataset.,,,TRUE,,,,schema.org/dataset,str Dataset Name,Name of the dataset,,,TRUE,,,,, Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique Dataset Description,Description of the dataset.,,,FALSE,,,,, diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 312c90d8..4304561a 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -29173,6 +29173,9 @@ { "@id": "bts:BiospecimenFixative" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29399,6 +29402,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29428,6 +29434,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29457,6 +29466,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29486,6 +29498,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29515,6 +29530,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29544,6 +29562,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29573,6 +29594,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29602,6 +29626,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29631,6 +29658,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29660,6 +29690,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29689,6 +29722,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29718,6 +29754,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29747,6 +29786,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29776,6 +29818,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29805,6 +29850,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29834,6 +29882,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29902,6 +29953,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29974,6 +30028,9 @@ { "@id": "bts:ModelPrimaryDiagnosis" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -30003,6 +30060,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30032,6 +30092,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30061,6 +30124,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30090,6 +30156,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30119,6 +30188,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30148,6 +30220,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30183,6 +30258,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30225,6 +30303,9 @@ { "@id": "bts:ToolOutputFormat" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -30254,6 +30335,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30283,6 +30367,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30312,6 +30399,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30341,6 +30431,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -31667,6 +31760,9 @@ { "@id": "bts:IndividualTumorGrade" }, + { + "@id": "bts:CountryOfOrigin" + }, { "@id": "bts:StudySourceGeography" } @@ -32072,6 +32168,9 @@ { "@id": "bts:BiospecimenComposition" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -201200,6 +201299,9 @@ { "@id": "bts:ModelTreatmentType" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -202016,6 +202118,9 @@ "rdfs:subClassOf": [ { "@id": "bts:ConsortiumFundingAgency" + }, + { + "@id": "bts:Funder" } ], "schema:isPartOf": { @@ -202064,23 +202169,21 @@ ] }, { - "@id": "bts:Contributors", + "@id": "bts:Contributor", "@type": "rdfs:Class", - "rdfs:comment": "The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.", - "rdfs:label": "Contributors", + "rdfs:comment": "TBD", + "rdfs:label": "Contributor", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:ToolEntityRole" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "contributors", + "sms:displayName": "Contributor", "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { "@id": "bts:Keywords", @@ -202096,7 +202199,7 @@ "@id": "http://schema.biothings.io" }, "sms:displayName": "keywords", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "list like" ] @@ -202228,6 +202331,23 @@ "unique" ] }, + { + "@id": "bts:Contributors", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Contributors", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "contributors", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Study", "@type": "rdfs:Class", @@ -202313,10 +202433,10 @@ "sms:validationRules": [] }, { - "@id": "bts:DatasetName", + "@id": "bts:AccessType", "@type": "rdfs:Class", - "rdfs:comment": "Name of the dataset", - "rdfs:label": "DatasetName", + "rdfs:comment": "Access type for the dataset.", + "rdfs:label": "AccessType", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202325,68 +202445,111 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Name", - "sms:required": "sms:true", + "schema:rangeIncludes": [ + { + "@id": "bts:Anonymous" + }, + { + "@id": "bts:Open" + }, + { + "@id": "bts:Controlled" + }, + { + "@id": "bts:Private" + } + ], + "sms:displayName": "accessType", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:Anonymous", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Anonymous", + "rdfs:subClassOf": [ + { + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Anonymous", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetAlias", + "@id": "bts:Open", "@type": "rdfs:Class", - "rdfs:comment": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.", - "rdfs:label": "DatasetAlias", + "rdfs:comment": "TBD", + "rdfs:label": "Open", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Alias", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] + "sms:displayName": "Open", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:DatasetDescription", + "@id": "bts:Controlled", "@type": "rdfs:Class", - "rdfs:comment": "Description of the dataset.", - "rdfs:label": "DatasetDescription", + "rdfs:comment": "TBD", + "rdfs:label": "Controlled", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Description", + "sms:displayName": "Controlled", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetDesign", + "@id": "bts:Private", "@type": "rdfs:Class", - "rdfs:comment": "The overall design of the dataset.", - "rdfs:label": "DatasetDesign", + "rdfs:comment": "TBD", + "rdfs:label": "Private", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Design", + "sms:displayName": "Private", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetUrl", + "@id": "bts:AlternateName", "@type": "rdfs:Class", - "rdfs:comment": "The url of where the dataset is stored.", - "rdfs:label": "DatasetUrl", + "rdfs:comment": "An altername name that can be used for search and discovery improvement.", + "rdfs:label": "AlternateName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202395,17 +202558,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Url", - "sms:required": "sms:true", + "sms:displayName": "alternateName", + "sms:required": "sms:false", "sms:validationRules": [ - "url" + "str" ] }, { - "@id": "bts:DatasetDoi", + "@id": "bts:ConditionsOfAccess", "@type": "rdfs:Class", - "rdfs:comment": "The Digital Object Identifier (DOI) associated with the dataset.", - "rdfs:label": "DatasetDoi", + "rdfs:comment": "Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown.", + "rdfs:label": "ConditionsOfAccess", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202414,17 +202577,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Doi", - "sms:required": "sms:true", + "sms:displayName": "conditionsOfAccess", + "sms:required": "sms:false", "sms:validationRules": [ - "url" + "str" ] }, { - "@id": "bts:DatasetAssay", + "@id": "bts:CountryOfOrigin", "@type": "rdfs:Class", - "rdfs:comment": "The assay the dataset is representative of. Multiple values permitted, comma separated.", - "rdfs:label": "DatasetAssay", + "rdfs:comment": "Origin of individuals from which data were generated. Omit if not applicable/unknown.", + "rdfs:label": "CountryOfOrigin", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202435,8813 +202598,7783 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:10-cellRNASequencing" + "@id": "bts:AD" }, { - "@id": "bts:16SRibosomalGeneSequencingAssay" + "@id": "bts:AE" }, { - "@id": "bts:3'RNA-seq" + "@id": "bts:AF" }, { - "@id": "bts:3C" + "@id": "bts:AG" }, { - "@id": "bts:3C-qPCR" + "@id": "bts:AI" }, { - "@id": "bts:3DATAC-PALM" + "@id": "bts:AL" }, { - "@id": "bts:3DBioprinting" + "@id": "bts:AM" }, { - "@id": "bts:3DCellCulture" + "@id": "bts:AO" }, { - "@id": "bts:4C" + "@id": "bts:AQ" }, { - "@id": "bts:5C" + "@id": "bts:AR" }, { - "@id": "bts:ATAC-Seq" + "@id": "bts:AS" }, { - "@id": "bts:ATPBioluminescenceAssay" + "@id": "bts:AT" }, { - "@id": "bts:AffinityPurificationMassSpectrometry" + "@id": "bts:AU" }, { - "@id": "bts:Allograft" + "@id": "bts:AW" }, { - "@id": "bts:AmpliconSequencing" + "@id": "bts:AX" }, { - "@id": "bts:AngiogenesisAssay" + "@id": "bts:AZ" }, { - "@id": "bts:ApoptosisAssay" + "@id": "bts:BA" }, { - "@id": "bts:AtomicAbsorptionSpectrophotometry" + "@id": "bts:BB" }, { - "@id": "bts:AtomicAbsorptionSpectroscopy" + "@id": "bts:BD" }, { - "@id": "bts:AtomicForceMicroscopy" + "@id": "bts:BE" }, { - "@id": "bts:Autoradiography" + "@id": "bts:BF" }, { - "@id": "bts:Barcode-Seq" + "@id": "bts:BG" }, { - "@id": "bts:BicinchoninicAcidAssay" + "@id": "bts:BH" }, { - "@id": "bts:BindingAssay" + "@id": "bts:BI" }, { - "@id": "bts:Bio-LayerInterferometry" + "@id": "bts:BJ" }, { - "@id": "bts:BioluminescenceImaging" + "@id": "bts:BL" }, { - "@id": "bts:BisulfiteSequencing" + "@id": "bts:BM" }, { - "@id": "bts:BrightfieldMicroscopy" + "@id": "bts:BN" }, { - "@id": "bts:BrillouinMicroscopy" + "@id": "bts:BO" }, { - "@id": "bts:CASFISH" + "@id": "bts:BQ" }, { - "@id": "bts:CITE-seq" + "@id": "bts:BR" }, { - "@id": "bts:CLIP-qPCR" + "@id": "bts:BS" }, { - "@id": "bts:CRISPR" + "@id": "bts:BT" }, { - "@id": "bts:CUT&RUN" + "@id": "bts:BV" }, { - "@id": "bts:CUT&Tag-Sequencing" + "@id": "bts:BW" }, { - "@id": "bts:CellAdhesionAssay" + "@id": "bts:BY" }, { - "@id": "bts:CellProliferationAssay" + "@id": "bts:BZ" }, { - "@id": "bts:CellViabilityAssay" + "@id": "bts:CA" }, { - "@id": "bts:Cell-spreadingAssay" + "@id": "bts:CC" }, { - "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay" + "@id": "bts:CD" }, { - "@id": "bts:CerenkovLuminescenceImaging" + "@id": "bts:CF" }, { - "@id": "bts:ChIA-PET" + "@id": "bts:CG" }, { - "@id": "bts:ChIP-PCR" + "@id": "bts:CH" }, { - "@id": "bts:ChIP-Seq" + "@id": "bts:CI" }, { - "@id": "bts:ChIP-qPCRassay" + "@id": "bts:CK" }, { - "@id": "bts:ChemiluminescentAssay" + "@id": "bts:CL" }, { - "@id": "bts:ChemotaxisAssay" + "@id": "bts:CM" }, { - "@id": "bts:CircularDichroismSpectroscopy" + "@id": "bts:CN" }, { - "@id": "bts:Co-Immunoprecipitation" + "@id": "bts:CO" }, { - "@id": "bts:Co-cultureAssay" + "@id": "bts:CR" }, { - "@id": "bts:Collision-InducedDissociation" + "@id": "bts:CU" }, { - "@id": "bts:ColorimetricCellViabilityAssay" + "@id": "bts:CV" }, { - 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"sms:displayName": "3D ATAC-PALM", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TransmissionElectronMicroscopy", + "@id": "bts:3DBioprinting", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TransmissionElectronMicroscopy", + "rdfs:label": "3DBioprinting", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211414,16 +210565,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transmission Electron Microscopy", + "sms:displayName": "3D Bioprinting", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TranswellAssay", + "@id": "bts:3DCellCulture", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TranswellAssay", + "rdfs:label": "3DCellCulture", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211440,16 +210594,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transwell Assay", + "sms:displayName": "3D Cell Culture", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UPLC-MSMS", + "@id": "bts:4C", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UPLC-MSMS", + "rdfs:label": "4C", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211466,16 +210623,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UPLC-MSMS", + "sms:displayName": "4C", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UVPhotocrosslinking", + "@id": "bts:5C", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UVPhotocrosslinking", + "rdfs:label": "5C", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211492,16 +210652,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UV Photocrosslinking", + "sms:displayName": "5C", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VibrationalSpectroscopy", + "@id": "bts:ATAC-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VibrationalSpectroscopy", + "rdfs:label": "ATAC-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211518,16 +210681,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Vibrational Spectroscopy", + "sms:displayName": "ATAC-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VirusPlaqueAssay", + "@id": "bts:ATPBioluminescenceAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VirusPlaqueAssay", + "rdfs:label": "ATPBioluminescenceAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211544,16 +210710,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Virus Plaque Assay", + "sms:displayName": "ATP Bioluminescence Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VonKossaStaining", + "@id": "bts:AffinityPurificationMassSpectrometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VonKossaStaining", + "rdfs:label": "AffinityPurificationMassSpectrometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211570,16 +210739,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Von Kossa Staining", + "sms:displayName": "Affinity Purification Mass Spectrometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WesternBlotting", + "@id": "bts:Allograft", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WesternBlotting", + "rdfs:label": "Allograft", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211596,16 +210768,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Western Blotting", + "sms:displayName": "Allograft", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeExomeSequencing", + "@id": "bts:AmpliconSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeExomeSequencing", + "rdfs:label": "AmpliconSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211622,16 +210797,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Exome Sequencing", + "sms:displayName": "Amplicon Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeGenomeBisulfiteSequencing", + "@id": "bts:AngiogenesisAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeGenomeBisulfiteSequencing", + "rdfs:label": "AngiogenesisAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211648,18 +210826,18 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Genome Bisulfite Sequencing", + "sms:displayName": "Angiogenesis Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeGenomeSequencing", + "@id": "bts:ApoptosisAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeGenomeSequencing", + "rdfs:label": "ApoptosisAssay", "rdfs:subClassOf": [ { - "@id": "bts:ToolTopic" + "@id": "bts:MeasurementTechnique" }, { "@id": "bts:DatasetAssay" @@ -211677,16 +210855,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Genome Sequencing", + "sms:displayName": "Apoptosis Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WidefieldFluorescenceMicroscopy", + "@id": "bts:AtomicAbsorptionSpectrophotometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WidefieldFluorescenceMicroscopy", + "rdfs:label": "AtomicAbsorptionSpectrophotometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211703,16 +210884,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Widefield Fluorescence Microscopy", + "sms:displayName": "Atomic Absorption Spectrophotometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Wound-HealingAssay", + "@id": "bts:AtomicAbsorptionSpectroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Wound-HealingAssay", + "rdfs:label": "AtomicAbsorptionSpectroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211729,16 +210913,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Wound-Healing Assay", + "sms:displayName": "Atomic Absorption Spectroscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayCrystallography", + "@id": "bts:AtomicForceMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayCrystallography", + "rdfs:label": "AtomicForceMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211755,16 +210942,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Crystallography", + "sms:displayName": "Atomic Force Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayDiffraction", + "@id": "bts:Autoradiography", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayDiffraction", + "rdfs:label": "Autoradiography", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211781,16 +210971,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Diffraction", + "sms:displayName": "Autoradiography", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayMicro-ComputedTomography", + "@id": "bts:Barcode-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayMicro-ComputedTomography", + "rdfs:label": "Barcode-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211807,16 +211000,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Micro-Computed Tomography", + "sms:displayName": "Barcode-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CDNAArray", + "@id": "bts:BicinchoninicAcidAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CDNAArray", + "rdfs:label": "BicinchoninicAcidAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211833,16 +211029,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "cDNA Array", + "sms:displayName": "Bicinchoninic Acid Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ECLIP-Seq", + "@id": "bts:BindingAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ECLIP-Seq", + "rdfs:label": "BindingAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211859,16 +211058,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "eCLIP-Seq", + "sms:displayName": "Binding Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MRNASequencing", + "@id": "bts:Bio-LayerInterferometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MRNASequencing", + "rdfs:label": "Bio-LayerInterferometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211885,16 +211087,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "mRNA Sequencing", + "sms:displayName": "Bio-Layer Interferometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:QPCR", + "@id": "bts:BioluminescenceImaging", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "QPCR", + "rdfs:label": "BioluminescenceImaging", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211911,16 +211116,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "qPCR", + "sms:displayName": "Bioluminescence Imaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScCGI-seq", + "@id": "bts:BisulfiteSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScCGI-seq", + "rdfs:label": "BisulfiteSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211937,16 +211145,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scCGI-seq", + "sms:displayName": "Bisulfite Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScNT-Seq", + "@id": "bts:BrightfieldMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScNT-Seq", + "rdfs:label": "BrightfieldMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211963,16 +211174,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scNT-Seq", + "sms:displayName": "Brightfield Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScSLAM-seq", + "@id": "bts:BrillouinMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScSLAM-seq", + "rdfs:label": "BrillouinMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211989,16 +211203,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scSLAM-seq", + "sms:displayName": "Brillouin Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SeqFISH", + "@id": "bts:CASFISH", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SeqFISH", + "rdfs:label": "CASFISH", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212015,16 +211232,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "seqFISH", + "sms:displayName": "CASFISH", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ShRNA", + "@id": "bts:CITE-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ShRNA", + "rdfs:label": "CITE-seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212041,16 +211261,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "shRNA", + "sms:displayName": "CITE-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SiRNA", + "@id": "bts:CLIP-qPCR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SiRNA", + "rdfs:label": "CLIP-qPCR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212067,16 +211290,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "siRNA", + "sms:displayName": "CLIP-qPCR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SmFISH", + "@id": "bts:CRISPR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SmFISH", + "rdfs:label": "CRISPR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212093,16 +211319,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "smFISH", + "sms:displayName": "CRISPR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SmRNA-seq", + "@id": "bts:CUT&RUN", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SmRNA-seq", + "rdfs:label": "CUT&RUN", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212119,16 +211348,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "smRNA-seq", + "sms:displayName": "CUT&RUN", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SnRNA-seq", + "@id": "bts:CUT&Tag-Sequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SnRNA-seq", + "rdfs:label": "CUT&Tag-Sequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212145,16 +211377,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "snRNA-seq", + "sms:displayName": "CUT&Tag-Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:IsothermalTitrationCalorimetry", + "@id": "bts:CellAdhesionAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "IsothermalTitrationCalorimetry", + "rdfs:label": "CellAdhesionAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212171,16 +211406,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Isothermal Titration Calorimetry", + "sms:displayName": "Cell Adhesion Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SuspendedMicrochannelResonator", + "@id": "bts:CellProliferationAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SuspendedMicrochannelResonator", + "rdfs:label": "CellProliferationAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212197,16 +211435,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Suspended Microchannel Resonator", + "sms:displayName": "Cell Proliferation Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:10xMultiome", + "@id": "bts:CellViabilityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "10xMultiome", + "rdfs:label": "CellViabilityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212223,16 +211464,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "10x Multiome", + "sms:displayName": "Cell Viability Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VisiumSpatialGeneExpression", + "@id": "bts:Cell-spreadingAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VisiumSpatialGeneExpression", + "rdfs:label": "Cell-spreadingAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212249,16 +211493,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Visium Spatial Gene Expression", + "sms:displayName": "Cell-spreading Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:AntitumorDrugScreeningAssay", + "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AntitumorDrugScreeningAssay", + "rdfs:label": "CellTiter-GloLuminescentCellViabilityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212275,16 +211522,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Antitumor Drug Screening Assay", + "sms:displayName": "CellTiter-Glo Luminescent Cell Viability Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BioelectrochemicalAnalysis", + "@id": "bts:CerenkovLuminescenceImaging", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BioelectrochemicalAnalysis", + "rdfs:label": "CerenkovLuminescenceImaging", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212301,16 +211551,22 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Bioelectrochemical Analysis", + "sms:displayName": "Cerenkov Luminescence Imaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChimericAntigenReceptorT-CellTherapy", + "@id": "bts:ChIA-PET", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ChimericAntigenReceptorT-CellTherapy", + "rdfs:label": "ChIA-PET", "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibraryStrategy" + }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212327,16 +211583,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Chimeric Antigen Receptor T-Cell Therapy", + "sms:displayName": "ChIA-PET", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CellCycleAssay", + "@id": "bts:ChIP-PCR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CellCycleAssay", + "rdfs:label": "ChIP-PCR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212353,16 +211612,22 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell Cycle Assay", + "sms:displayName": "ChIP-PCR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ClonalityAnalysis", + "@id": "bts:ChIP-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ClonalityAnalysis", + "rdfs:label": "ChIP-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibraryStrategy" + }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212379,16 +211644,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Clonality Analysis", + "sms:displayName": "ChIP-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ComparativeGenomicHybridization", + "@id": "bts:ChIP-qPCRassay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ComparativeGenomicHybridization", + "rdfs:label": "ChIP-qPCRassay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212405,16 +211673,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Comparative Genomic Hybridization", + "sms:displayName": "ChIP-qPCR assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cryo-ElectronMicroscopy", + "@id": "bts:ChemiluminescentAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cryo-ElectronMicroscopy", + "rdfs:label": "ChemiluminescentAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212431,16 +211702,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cryo-Electron Microscopy", + "sms:displayName": "Chemiluminescent Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cryo-ElectronTomography", + "@id": "bts:ChemotaxisAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cryo-ElectronTomography", + "rdfs:label": "ChemotaxisAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212457,16 +211731,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cryo-Electron Tomography", + "sms:displayName": "Chemotaxis Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DataIntegration", + "@id": "bts:CircularDichroismSpectroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "DataIntegration", + "rdfs:label": "CircularDichroismSpectroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212483,16 +211760,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Data Integration", + "sms:displayName": "Circular Dichroism Spectroscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Field-EmissionScanningElectronMicroscopy", + "@id": "bts:Co-Immunoprecipitation", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Field-EmissionScanningElectronMicroscopy", + "rdfs:label": "Co-Immunoprecipitation", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212509,16 +211789,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Field-Emission Scanning Electron Microscopy", + "sms:displayName": "Co-Immunoprecipitation", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Label-freeProteinQuantificationbyLC/MS", + "@id": "bts:Co-cultureAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Label-freeProteinQuantificationbyLC/MS", + "rdfs:label": "Co-cultureAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212535,16 +211818,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Label-free Protein Quantification by LC/MS", + "sms:displayName": "Co-culture Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MetaboliteProfilingAssay", + "@id": "bts:Collision-InducedDissociation", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MetaboliteProfilingAssay", + "rdfs:label": "Collision-InducedDissociation", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212561,16 +211847,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Metabolite Profiling Assay", + "sms:displayName": "Collision-Induced Dissociation", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ReporterGeneAssay", + "@id": "bts:ColorimetricCellViabilityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ReporterGeneAssay", + "rdfs:label": "ColorimetricCellViabilityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212587,16 +211876,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Reporter Gene Assay", + "sms:displayName": "Colorimetric Cell Viability Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Single-MoleculeLocalizationMicroscopy", + "@id": "bts:ComputationalModeling", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Single-MoleculeLocalizationMicroscopy", + "rdfs:label": "ComputationalModeling", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212613,16 +211905,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Single-Molecule Localization Microscopy", + "sms:displayName": "Computational Modeling", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Synthesis", + "@id": "bts:ComputationalTool", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Synthesis", + "rdfs:label": "ComputationalTool", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212639,16 +211934,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synthesis", + "sms:displayName": "Computational Tool", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TargetedTherapyAgent", + "@id": "bts:ComputedTomography", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TargetedTherapyAgent", + "rdfs:label": "ComputedTomography", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212665,16 +211963,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Targeted Therapy Agent", + "sms:displayName": "Computed Tomography", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TrichromeStainingMethod", + "@id": "bts:ConfocalMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TrichromeStainingMethod", + "rdfs:label": "ConfocalMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212691,16 +211992,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Trichrome Staining Method", + "sms:displayName": "Confocal Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UltrasoundImaging", + "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UltrasoundImaging", + "rdfs:label": "ConfocalReflectanceQuantitativePhaseMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212717,16 +212021,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Ultrasound Imaging", + "sms:displayName": "Confocal Reflectance Quantitative Phase Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TranscriptionprofilingbyNanoString", + "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TranscriptionprofilingbyNanoString", + "rdfs:label": "Cross-LinkingImmunoprecipitationHigh-throughputSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212743,16 +212050,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transcription profiling by NanoString", + "sms:displayName": "Cross-Linking Immunoprecipitation High-throughput Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:AlcianBlueStainingMethod", + "@id": "bts:Cross-LinkingMassSpectrometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AlcianBlueStainingMethod", + "rdfs:label": "Cross-LinkingMassSpectrometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212769,16 +212079,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Alcian Blue Staining Method", + "sms:displayName": "Cross-Linking Mass Spectrometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ArtificialIntelligence", + "@id": "bts:CyclicImmunofluorescence", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ArtificialIntelligence", + "rdfs:label": "CyclicImmunofluorescence", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212795,16 +212108,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Artificial Intelligence", + "sms:displayName": "Cyclic Immunofluorescence", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CellCulture", + "@id": "bts:CytochemicalStain", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CellCulture", + "rdfs:label": "CytochemicalStain", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212821,16 +212137,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell Culture", + "sms:displayName": "Cytochemical Stain", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ClinicalStudy", + "@id": "bts:CytokineExpressionProfile", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ClinicalStudy", + "rdfs:label": "CytokineExpressionProfile", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212847,16 +212166,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Clinical Study", + "sms:displayName": "Cytokine Expression Profile", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cell-freeCirculatingTumorDNAAssay", + "@id": "bts:CytometricBeadArrayAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cell-freeCirculatingTumorDNAAssay", + "rdfs:label": "CytometricBeadArrayAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212873,16 +212195,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell-free Circulating Tumor DNA Assay", + "sms:displayName": "Cytometric Bead Array Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Co-ImmunoprecipitationMassSpectrometry", + "@id": "bts:CytotoxicityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Co-ImmunoprecipitationMassSpectrometry", + "rdfs:label": "CytotoxicityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212899,16 +212224,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Co-Immunoprecipitation Mass Spectrometry", + "sms:displayName": "Cytotoxicity Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DeepLearning", + "@id": "bts:DBiT-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "DeepLearning", + "rdfs:label": "DBiT-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212925,16 +212253,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Deep Learning", + "sms:displayName": "DBiT-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:GeneOntologyEnrichmentAnalysis", + "@id": "bts:DNAGene-ExpressionMicroarray", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "GeneOntologyEnrichmentAnalysis", + "rdfs:label": "DNAGene-ExpressionMicroarray", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212951,16 +212282,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Gene Ontology Enrichment Analysis", + "sms:displayName": "DNA Gene-Expression Microarray", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:GeneSetEnrichmentAnalysis", + "@id": "bts:DNAMethylationArray", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "GeneSetEnrichmentAnalysis", + "rdfs:label": "DNAMethylationArray", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212977,16 +212311,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Gene Set Enrichment Analysis", + "sms:displayName": "DNA Methylation Array", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:GeneSilencing", + "@id": "bts:DNASequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "GeneSilencing", + "rdfs:label": "DNASequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213003,16 +212340,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Gene Silencing", + "sms:displayName": "DNA Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture", + "@id": "bts:DNase-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture", + "rdfs:label": "DNase-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213029,16 +212369,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture", + "sms:displayName": "DNase-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingMassCytometry", + "@id": "bts:DRIP-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ImagingMassCytometry", + "rdfs:label": "DRIP-seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213055,16 +212398,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Mass Cytometry", + "sms:displayName": "DRIP-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImmunofluorescentStainingMethod", + "@id": "bts:DarkFieldMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ImmunofluorescentStainingMethod", + "rdfs:label": "DarkFieldMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213081,16 +212427,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Immunofluorescent Staining Method", + "sms:displayName": "Dark Field Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ViralTransduction", + "@id": "bts:DeepMutationalScanning", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ViralTransduction", + "rdfs:label": "DeepMutationalScanning", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213107,16 +212456,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Viral Transduction", + "sms:displayName": "Deep Mutational Scanning", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MetastaticColonizationAssay", + "@id": "bts:DesorptionElectrosprayIonization", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MetastaticColonizationAssay", + "rdfs:label": "DesorptionElectrosprayIonization", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213133,18 +212485,18 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Metastatic Colonization Assay", + "sms:displayName": "Desorption Electrospray Ionization", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PhylogeneticAnalysis", + "@id": "bts:DideoxyChainTerminationDNASequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PhylogeneticAnalysis", + "rdfs:label": "DideoxyChainTerminationDNASequencing", "rdfs:subClassOf": [ { - "@id": "bts:ToolOperation" + "@id": "bts:MeasurementTechnique" }, { "@id": "bts:DatasetAssay" @@ -213162,16 +212514,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Phylogenetic Analysis", + "sms:displayName": "Dideoxy Chain Termination DNA Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PicrosiriusStaining", + "@id": "bts:DifferentialInterferenceContrastMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PicrosiriusStaining", + "rdfs:label": "DifferentialInterferenceContrastMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213188,16 +212543,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Picrosirius Staining", + "sms:displayName": "Differential Interference Contrast Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScratchAssay", + "@id": "bts:DifferentialScanningFluorimetry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScratchAssay", + "rdfs:label": "DifferentialScanningFluorimetry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213214,16 +212572,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Scratch Assay", + "sms:displayName": "Differential Scanning Fluorimetry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:StructuralVariantAnalysis", + "@id": "bts:DiffusionWeightedImaging", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "StructuralVariantAnalysis", + "rdfs:label": "DiffusionWeightedImaging", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213240,16 +212601,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Structural Variant Analysis", + "sms:displayName": "Diffusion Weighted Imaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SurvivalAnalysis", + "@id": "bts:DirectLong-ReadRNASequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SurvivalAnalysis", + "rdfs:label": "DirectLong-ReadRNASequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213266,16 +212630,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Survival Analysis", + "sms:displayName": "Direct Long-Read RNA Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TargetedErrorCorrectionSequencing", + "@id": "bts:Drop-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TargetedErrorCorrectionSequencing", + "rdfs:label": "Drop-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213292,16 +212659,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Targeted Error Correction Sequencing", + "sms:displayName": "Drop-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Tuba-Seq", + "@id": "bts:DropletDigitalPCR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Tuba-Seq", + "rdfs:label": "DropletDigitalPCR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213318,16 +212688,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Tuba-Seq", + "sms:displayName": "Droplet Digital PCR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SDS-PAGE", + "@id": "bts:Dual-LuciferaseReporterAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SDS-PAGE", + "rdfs:label": "Dual-LuciferaseReporterAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213344,16 +212717,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "SDS-PAGE", + "sms:displayName": "Dual-Luciferase Reporter Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CellFractionation", + "@id": "bts:DyeEndocytosisAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CellFractionation", + "rdfs:label": "DyeEndocytosisAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213370,16 +212746,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell Fractionation", + "sms:displayName": "Dye Endocytosis Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MultiscaleLightSheetMicroscopy", + "@id": "bts:DynamicContrast-EnhancedMagneticResonanceImaging", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MultiscaleLightSheetMicroscopy", + "rdfs:label": "DynamicContrast-EnhancedMagneticResonanceImaging", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213396,16 +212775,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Multiscale Light Sheet Microscopy", + "sms:displayName": "Dynamic Contrast-Enhanced Magnetic Resonance Imaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:LightSheetMicroscopy", + "@id": "bts:DynamicForceSpectroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "LightSheetMicroscopy", + "rdfs:label": "DynamicForceSpectroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213422,3537 +212804,3912 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Light Sheet Microscopy", + "sms:displayName": "Dynamic Force Spectroscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetSpecies", + "@id": "bts:DynamicLightScattering", "@type": "rdfs:Class", - "rdfs:comment": "The species the data was collected on. Multiple values permitted, comma separated.", - "rdfs:label": "DatasetSpecies", + "rdfs:comment": "TBD", + "rdfs:label": "DynamicLightScattering", "rdfs:subClassOf": [ { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:AfricanBushElephant" + "@id": "bts:MeasurementTechnique" }, { - "@id": "bts:Armadillo" + "@id": "bts:DatasetAssay" }, { - "@id": "bts:AsianElephant" + "@id": "bts:FileAssay" }, { - "@id": "bts:Boar" + "@id": "bts:PublicationAssay" }, { - "@id": "bts:Cat" - }, + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Dynamic Light Scattering", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DynamicSusceptibilityContrast-EnhancedMagneticResonanceImaging", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "DynamicSusceptibilityContrast-EnhancedMagneticResonanceImaging", + "rdfs:subClassOf": [ { - "@id": "bts:Chicken" + "@id": "bts:MeasurementTechnique" }, { - "@id": "bts:Cow" + "@id": "bts:DatasetAssay" }, { - "@id": "bts:Dog" + "@id": "bts:FileAssay" }, { - "@id": "bts:Escherichiacoli" + "@id": "bts:PublicationAssay" }, { - "@id": "bts:GuineaPig" - }, + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ELISA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ELISA", + "rdfs:subClassOf": [ { - "@id": "bts:Horse" + "@id": "bts:MeasurementTechnique" }, { - "@id": "bts:Human" + "@id": "bts:DatasetAssay" }, { - "@id": "bts:HumanPatient" + "@id": "bts:FileAssay" }, { - "@id": "bts:HumanCellLine" + "@id": "bts:PublicationAssay" }, { - "@id": "bts:Mouse" - }, + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ELISA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:EfferocytosisAssay", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "EfferocytosisAssay", + "rdfs:subClassOf": [ { - "@id": "bts:Multispecies" + "@id": "bts:MeasurementTechnique" }, { - "@id": "bts:NotApplicable" + "@id": "bts:DatasetAssay" }, { - "@id": "bts:Opossum" + "@id": "bts:FileAssay" }, { - "@id": "bts:Rabbit" + "@id": "bts:PublicationAssay" }, { - "@id": "bts:Rat" + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Efferocytosis Assay", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ElectronDiffraction", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ElectronDiffraction", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" }, { - "@id": "bts:Rhesusmonkey" + "@id": "bts:DatasetAssay" }, { - "@id": "bts:Sheep" + "@id": "bts:FileAssay" }, { - "@id": "bts:Trichoplaxadhaerens" + "@id": "bts:PublicationAssay" }, { - "@id": "bts:Unknown" + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Electron Diffraction", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ElectronMicroscopy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ElectronMicroscopy", + "rdfs:subClassOf": [ + { + "@id": "bts:ToolTopic" }, { - "@id": "bts:Unspecified" + "@id": "bts:MeasurementTechnique" }, { - "@id": "bts:Worm" + "@id": "bts:DatasetAssay" }, { - "@id": "bts:Yeast" + "@id": "bts:FileAssay" }, { - "@id": "bts:FruitFly" + "@id": "bts:PublicationAssay" }, { - "@id": "bts:Zebrafish" + "@id": "bts:DSPDatasetAssay" } ], - "sms:displayName": "Dataset Species", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Electron Microscopy", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:DatasetTumorType", + "@id": "bts:ElectronParamagneticResonanceSpectroscopy", "@type": "rdfs:Class", - "rdfs:comment": "The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.", - "rdfs:label": "DatasetTumorType", + "rdfs:comment": "TBD", + "rdfs:label": "ElectronParamagneticResonanceSpectroscopy", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ + "sms:displayName": "Electron Paramagnetic Resonance Spectroscopy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ElectrophoreticMobilityShiftAssay", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ElectrophoreticMobilityShiftAssay", + "rdfs:subClassOf": [ { - "@id": "bts:CutaneousMelanoma" + "@id": "bts:MeasurementTechnique" }, { - "@id": "bts:AcinarCellCarcinoma" + "@id": "bts:DatasetAssay" }, { - "@id": "bts:AcuteLymphoblasticLeukemia" + "@id": "bts:FileAssay" }, { - 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No Greek Letters.", + "rdfs:label": "DatasetAlias", "rdfs:subClassOf": [ { - "@id": "bts:DatasetFileFormats" - }, - { - "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "pptx", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Dataset Alias", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:Rcc", + "@id": "bts:DatasetDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rcc", + "rdfs:comment": "Description of the dataset.", + "rdfs:label": "DatasetDescription", "rdfs:subClassOf": [ { - "@id": "bts:DatasetFileFormats" - }, - { - "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "rcc", + "sms:displayName": "Dataset Description", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Xls", + "@id": "bts:DatasetDesign", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Xls", + "rdfs:comment": "The overall design of the dataset.", + "rdfs:label": "DatasetDesign", "rdfs:subClassOf": [ { - "@id": "bts:DatasetFileFormats" - }, - { - "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" - }, - { - "@id": "bts:ToolInputFormat" - }, - { - "@id": "bts:ToolOutputFormat" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "xls", + "sms:displayName": "Dataset Design", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Xlsx", + "@id": "bts:DatasetUrl", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Xlsx", + "rdfs:comment": "The url of where the dataset is stored.", + "rdfs:label": "DatasetUrl", "rdfs:subClassOf": [ { - "@id": "bts:DatasetFileFormats" - }, - { - "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" - }, - { - "@id": "bts:ToolInputFormat" - }, - { - "@id": "bts:ToolOutputFormat" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "xlsx", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Dataset Url", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] }, { - "@id": "bts:MGF", + "@id": "bts:DatasetDoi", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MGF", + "rdfs:comment": "The Digital Object Identifier (DOI) associated with the dataset.", + "rdfs:label": "DatasetDoi", "rdfs:subClassOf": [ { - "@id": "bts:DatasetFileFormats" - }, - { - "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MGF", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Dataset Doi", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] }, { - "@id": "bts:BIGWIG", + "@id": "bts:DatasetAssay", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "BIGWIG", + "rdfs:comment": "The assay the dataset is representative of. Multiple values permitted, comma separated.", + "rdfs:label": "DatasetAssay", "rdfs:subClassOf": [ { - "@id": "bts:DatasetFileFormats" - }, - { - "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "BIGWIG", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:H5AD", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "H5AD", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ToolInputFormat" + "@id": "bts:10-cellRNASequencing" }, { - "@id": "bts:ToolOutputFormat" + "@id": "bts:16SRibosomalGeneSequencingAssay" }, { - "@id": "bts:DatasetFileFormats" + "@id": "bts:3'RNA-seq" }, { - "@id": "bts:FileFormat" + "@id": "bts:3C" }, { - "@id": "bts:DSPDatasetFileFormats" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "H5AD", - "sms:required": "sms:false", - "sms:validationRules": [] - 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"@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Title", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] + "sms:displayName": "Ovarian Serous Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceLink", + "@id": "bts:Pan-cancer", "@type": "rdfs:Class", - "rdfs:comment": "The URL that links to the item.", - "rdfs:label": "ResourceLink", + "rdfs:comment": "TBD", + "rdfs:label": "Pan-cancer", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Link", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] + "sms:displayName": "Pan-cancer", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceDoi", + "@id": "bts:PancreaticAdenocarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "The Digital Object Identifier (DOI) associated with the educational resource.", - "rdfs:label": "ResourceDoi", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticAdenocarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Doi", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] + "sms:displayName": "Pancreatic Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceTopic", + "@id": "bts:PancreaticCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceTopic", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:ComputationalModelDevelopment" - }, + "sms:displayName": "Pancreatic Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PancreaticDuctalAdenocarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticDuctalAdenocarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:ComputationalResource" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Diversity/Equity/Inclusion" + "@id": "bts:FileTumorType" }, { - "@id": "bts:DrugResistance/Sensitivity" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Epigenetics" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pancreatic Ductal Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PancreaticNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:Evolution" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ExperimentalModelDevelopment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Heterogeneity" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Immunotherapy" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pancreatic Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PancreaticNeuroendocrineCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticNeuroendocrineCarcinoma", + "rdfs:subClassOf": [ { - 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"@id": "bts:Outreach" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:PlatformDevelopment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:TrainingMaterial" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:TumorProgression" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pheochromocytoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PituitaryGlandAdenoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PituitaryGlandAdenoma", + "rdfs:subClassOf": [ { - "@id": "bts:Tumor-Immune" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ComputerScience" + "@id": "bts:FileTumorType" }, { - "@id": "bts:EnvironmentalScience" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:InformationScience" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pituitary Gland Adenoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlasmablasticLymphoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlasmablasticLymphoma", + "rdfs:subClassOf": [ { - "@id": "bts:EducationalTechnology" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Anatomy/Physiology" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Biology" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Ecology" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plasmablastic Lymphoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Plasmacytoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Plasmacytoma", + "rdfs:subClassOf": [ { - "@id": "bts:Genetics" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Nutrition" + "@id": "bts:FileTumorType" }, { - "@id": "bts:MeasurementandData" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:StatisticsandProbability" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plasmacytoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlexiformSchwannoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlexiformSchwannoma", + "rdfs:subClassOf": [ { - "@id": "bts:Chemistry" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Physics" + "@id": "bts:FileTumorType" }, { - "@id": "bts:SystemsBiology" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:PatientAdvocacy" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Topic", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plexiform Schwannoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceActivityType", + "@id": "bts:PrecursorB-celllymphoblasticleukemia", "@type": "rdfs:Class", - "rdfs:comment": "The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceActivityType", + "rdfs:comment": "TBD", + "rdfs:label": "PrecursorB-celllymphoblasticleukemia", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Activity/Lab" - }, - { - "@id": "bts:Assessment" - }, + "sms:displayName": "Precursor B-cell lymphoblastic leukemia", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PrimaryCentralNervousSystemLymphoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PrimaryCentralNervousSystemLymphoma", + "rdfs:subClassOf": [ { - "@id": "bts:CaseStudy" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:DataSet" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Diagram/Illustration" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:FullCourse" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Primary Central Nervous System Lymphoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PrimaryMyelofibrosis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PrimaryMyelofibrosis", + "rdfs:subClassOf": [ { - "@id": "bts:Game" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Homework/Assignment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Interactive" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Lecture" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Primary Myelofibrosis", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProstateAdenocarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ProstateAdenocarcinoma", + "rdfs:subClassOf": [ { - 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Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceIntendedUse", + "rdfs:comment": "TBD", + "rdfs:label": "Rhabdomyosarcoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ + "sms:displayName": "Rhabdomyosarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Rosette-FormingGlioneuronalTumor", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Rosette-FormingGlioneuronalTumor", + "rdfs:subClassOf": [ { - "@id": "bts:Curriculum/Instruction" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Assessment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ProfessionalDevelopment" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Other" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Intended Use", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Rosette-Forming Glioneuronal Tumor", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourcePrimaryAudience", + "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "The intended end user audience for the resource. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourcePrimaryAudience", + "rdfs:comment": "TBD", + "rdfs:label": "SalivaryGlandAdenoidCysticCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ + "sms:displayName": "Salivary Gland Adenoid Cystic Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Sarcoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Sarcoma", + "rdfs:subClassOf": [ { - "@id": "bts:Student" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Teacher" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Administrator" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Parent" + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Schwannoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Schwannoma", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Professor" + "@id": "bts:FileTumorType" }, { - "@id": "bts:GeneralAudience" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Other" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Primary Audience", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Schwannoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceEducationalLevel", + "@id": "bts:SerousTubalIntraepithelialCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceEducationalLevel", + "rdfs:comment": "TBD", + "rdfs:label": "SerousTubalIntraepithelialCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Preschool" - }, - { - "@id": "bts:LowerPrimary" - }, + "sms:displayName": "Serous Tubal Intraepithelial Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SinonasalSquamousCellCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SinonasalSquamousCellCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:UpperPrimary" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:MiddleSchool" + "@id": "bts:FileTumorType" }, { - "@id": "bts:HighSchool" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:CommunityCollege/LowerDivision" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sinonasal Squamous Cell Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SkinCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SkinCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:College/UpperDivision" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Graduate/Profession" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Career/Technical" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:AdultEducation" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Educational Level", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceDescription", + "@id": "bts:SkinNeoplasm", "@type": "rdfs:Class", - "rdfs:comment": "Abstract or summary of the item.", - "rdfs:label": "ResourceDescription", + "rdfs:comment": "TBD", + "rdfs:label": "SkinNeoplasm", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Description", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] + "sms:displayName": "Skin Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceOriginInstitution", + "@id": "bts:SquamousCellCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceOriginInstitution", + "rdfs:comment": "TBD", + "rdfs:label": "SquamousCellCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Origin Institution", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "sms:displayName": "Squamous Cell Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceLanguage", + "@id": "bts:SynovialSarcoma", "@type": "rdfs:Class", - "rdfs:comment": "Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceLanguage", + "rdfs:comment": "TBD", + "rdfs:label": "SynovialSarcoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Aa" - }, - { - "@id": "bts:Ab" - }, + "sms:displayName": "Synovial Sarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:TAcuteLymphoblasticLeukemia", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "TAcuteLymphoblasticLeukemia", + "rdfs:subClassOf": [ { - "@id": "bts:Ae" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Af" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Ak" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Am" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T Acute Lymphoblastic Leukemia", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T-CellLymphoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T-CellLymphoma", + "rdfs:subClassOf": [ { - "@id": "bts:An" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ar" + "@id": "bts:FileTumorType" }, { - "@id": "bts:As" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Av" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T-Cell Lymphoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Teratoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Teratoma", + "rdfs:subClassOf": [ { - "@id": "bts:Ay" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Az" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Ba" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Be" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Teratoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:TesticularEmbryonalCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "TesticularEmbryonalCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Bg" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Bh" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Bi" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Bm" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Testicular Embryonal Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ThyroidGlandAnaplasticCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ThyroidGlandAnaplasticCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Bn" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Bo" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Br" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Bs" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Thyroid Gland Anaplastic Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ThyroidGlandCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ThyroidGlandCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Ca" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ce" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Ch" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Co" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Thyroid Gland Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures", + "rdfs:subClassOf": [ { - "@id": "bts:Cr" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Cs" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Cu" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Cv" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UrothelialCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UrothelialCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Cy" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Da" + "@id": "bts:FileTumorType" }, { - "@id": "bts:De" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Dv" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Urothelial Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UterineAdenosarcoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UterineAdenosarcoma", + "rdfs:subClassOf": [ { - "@id": "bts:Dz" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ee" + "@id": "bts:FileTumorType" }, { - "@id": "bts:El" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:En" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Uterine Adenosarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UvealMelanoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UvealMelanoma", + "rdfs:subClassOf": [ { - "@id": "bts:Eo" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Es" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Et" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Eu" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Uveal Melanoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UvealNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UvealNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:Fa" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ff" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Fi" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Fj" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Uveal Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VascularNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VascularNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:Fo" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Fr" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Fy" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Ga" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Vascular Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Not-Applicable", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Not-Applicable", + "rdfs:subClassOf": [ { - "@id": "bts:Gd" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Gl" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Gn" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Gu" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Not-Applicable", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlexiformNeurofibroma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlexiformNeurofibroma", + "rdfs:subClassOf": [ { - "@id": "bts:Gv" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ha" + "@id": "bts:FileTumorType" }, { - "@id": "bts:He" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Hi" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plexiform Neurofibroma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DatasetTissue", + "@type": "rdfs:Class", + "rdfs:comment": "Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.", + "rdfs:label": "DatasetTissue", + "rdfs:subClassOf": [ { - "@id": "bts:Ho" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Hr" + "@id": "bts:Gonad" }, { - "@id": "bts:Ht" + "@id": "bts:AbdominalEsophagus" }, { - "@id": "bts:Hu" + "@id": "bts:AdiposeTissue" }, { - "@id": "bts:Hy" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:Hz" + "@id": "bts:Alveolus" }, { - "@id": "bts:Ia" + "@id": "bts:Aorta" }, { - "@id": "bts:Id" + "@id": "bts:Artery" }, { - "@id": "bts:Ie" + "@id": "bts:AscendingColon" }, { - "@id": "bts:Ig" + "@id": "bts:BileDuct" }, { - "@id": "bts:Ii" + "@id": "bts:Bladder" }, { - "@id": "bts:Ik" + "@id": "bts:Blood" }, { - "@id": "bts:Io" + "@id": "bts:BloodVessel" }, { - "@id": "bts:Is" + "@id": "bts:Bone" }, { - "@id": "bts:It" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:Iu" + "@id": "bts:Brain" }, { - "@id": "bts:Ja" + "@id": "bts:Breast" }, { - "@id": "bts:Jv" + "@id": "bts:Caecum" }, { - "@id": "bts:Ka" + "@id": "bts:Cancer-AssociatedFibroblast" }, { - "@id": "bts:Kg" + "@id": "bts:Cardia" }, { - "@id": "bts:Ki" + "@id": "bts:Cartilage" }, { - "@id": "bts:Kj" + "@id": "bts:CervixUteri" }, { - "@id": "bts:Kk" + "@id": "bts:Choroid" }, { - "@id": "bts:Kl" + "@id": "bts:Colon" }, { - "@id": "bts:Km" + "@id": "bts:ConnectiveandSoftTissue" }, { - "@id": "bts:Kn" + "@id": "bts:Cornea" }, { - "@id": "bts:Ko" + "@id": "bts:Duodenum" }, { - "@id": "bts:Kr" + "@id": "bts:Ear" }, { - "@id": "bts:Ks" + "@id": "bts:Embryo" }, { - "@id": "bts:Ku" + "@id": "bts:EmbryonicHeart" }, { - "@id": "bts:Kv" + "@id": "bts:Endocervix" }, { - "@id": "bts:Kw" + "@id": "bts:Endometrium" }, { - "@id": "bts:Ky" + "@id": "bts:Endothelium" }, { - "@id": "bts:La" + "@id": "bts:Epithelium" }, { - "@id": "bts:Lb" + "@id": "bts:Esophagus" }, { - "@id": "bts:Lg" + "@id": "bts:Eye" }, { - "@id": "bts:Li" + "@id": "bts:FallopianTube" }, { - "@id": "bts:Ln" + "@id": "bts:Foreskin" }, { - "@id": "bts:Lo" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:Lt" + "@id": "bts:GastroesophagealJunction" }, { - "@id": "bts:Lu" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:Lv" + "@id": "bts:Genitourinary" }, { - "@id": "bts:Mg" + "@id": "bts:HairFollicle" }, { - "@id": "bts:Mh" + "@id": "bts:HeadandNeck" }, { - "@id": "bts:Mi" + "@id": "bts:Heart" }, { - "@id": "bts:Mk" + "@id": "bts:HeartMuscle" }, { - "@id": "bts:Ml" + "@id": "bts:HematopoieticSystem" }, { - "@id": "bts:Mn" + "@id": "bts:Hippocampus" }, { - "@id": "bts:Mr" + "@id": "bts:Intestine" }, { - "@id": "bts:Ms" + "@id": "bts:Intra-AbdominalLymphNodes" }, { - "@id": "bts:Mt" + "@id": "bts:IntrathoracicLymphNodes" }, { - "@id": "bts:My" + "@id": "bts:Joint" }, { - "@id": "bts:Na" + "@id": "bts:Kidney" }, { - "@id": "bts:Nb" + "@id": "bts:Larynx" }, { - "@id": "bts:Nd" + "@id": "bts:Ligament" }, { - "@id": "bts:Ne" + "@id": "bts:Liver" }, { - "@id": "bts:Ng" + "@id": "bts:Lung" }, { - "@id": "bts:Nl" + "@id": "bts:Lymph" }, { - "@id": "bts:Nn" + "@id": "bts:LymphNode" }, { - "@id": "bts:No" + "@id": "bts:LymphNodesofAxillaorArm" }, { - "@id": "bts:Nr" + "@id": "bts:LymphNodesofInguinalRegionorLeg" }, { - "@id": "bts:Nv" + "@id": "bts:LymphaticSystem" }, { - "@id": "bts:Ny" + "@id": "bts:LymphoidTissue" }, { - "@id": "bts:Oc" + "@id": "bts:MainBronchus" }, { - "@id": "bts:Oj" + "@id": "bts:MammaryGland" }, { - "@id": "bts:Om" + "@id": "bts:Meninges" }, { - "@id": "bts:Or" + "@id": "bts:Mesenchyme" }, { - "@id": "bts:Os" + "@id": "bts:Mucosa" }, { - "@id": "bts:Pa" + "@id": "bts:Muscle" }, { - "@id": "bts:Pi" + "@id": "bts:NasalCavity" }, { - "@id": "bts:Pl" + "@id": "bts:NervousSystem" }, { - "@id": "bts:Ps" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Pt" + "@id": "bts:OlfactoryMucosa" }, { - "@id": "bts:Qu" + "@id": "bts:Omentum" }, { - "@id": "bts:Rm" + "@id": "bts:OralCavity" }, { - "@id": "bts:Rn" + "@id": "bts:OralMucosa" }, { - "@id": "bts:Ro" + "@id": "bts:Ovary" }, { - "@id": "bts:Ru" + "@id": "bts:Pancreas" }, { - "@id": "bts:Rw" + "@id": "bts:PelvicLymphNodes" }, { - "@id": "bts:Sa" + "@id": "bts:PendingAnnotation" }, { - "@id": "bts:Sc" + "@id": "bts:PeriodontalLigament" }, { - "@id": "bts:Sd" + "@id": "bts:PeripheralNerves" }, { - "@id": "bts:Se" + "@id": "bts:Peritoneum" }, { - "@id": "bts:Sg" + "@id": "bts:Pharynx" }, { - "@id": "bts:Si" + "@id": "bts:PituitaryGland" }, { - "@id": "bts:Sk" + "@id": "bts:Placenta" }, { - "@id": "bts:Sl" + "@id": "bts:Pleura" }, { - "@id": "bts:Sm" + "@id": "bts:ProstateGland" }, { - "@id": "bts:Sn" + "@id": "bts:Rectum" }, { - "@id": "bts:So" + "@id": "bts:ReproductiveSystem" }, { - "@id": "bts:Sq" + "@id": "bts:RespiratorySystem" }, { - "@id": "bts:Sr" + "@id": "bts:SalivaryGland" }, { - "@id": "bts:Ss" + "@id": "bts:Sclera" }, { - "@id": "bts:St" + "@id": "bts:SinonasalTract" }, { - "@id": "bts:Su" + "@id": "bts:Skin" }, { - "@id": "bts:Sv" + "@id": "bts:SmallIntestine" }, { - "@id": "bts:Sw" + "@id": "bts:SpinalCord" }, { - "@id": "bts:Ta" + "@id": "bts:Spleen" }, { - "@id": "bts:Te" + "@id": "bts:Stomach" }, { - "@id": "bts:Tg" + "@id": "bts:SynovialMembrane" }, { - "@id": "bts:Th" + "@id": "bts:Tendon" }, { - "@id": "bts:Ti" + "@id": "bts:Testis" }, { - "@id": "bts:Tk" + "@id": "bts:Thymus" }, { - "@id": "bts:Tl" + "@id": "bts:ThyroidGland" }, { - "@id": "bts:Tn" + "@id": "bts:Tongue" }, { - "@id": "bts:To" + "@id": "bts:Tonsil" }, { - "@id": "bts:Tr" + "@id": "bts:Trachea" }, { - "@id": "bts:Ts" + "@id": "bts:UmbilicalCord" }, { - "@id": "bts:Tt" + "@id": "bts:Unspecified" }, { - "@id": "bts:Tw" + "@id": "bts:Uterus" }, { - "@id": "bts:Ty" + "@id": "bts:Vagina" }, { - "@id": "bts:Ug" + "@id": "bts:VascularEndothelium" }, { - "@id": "bts:Uk" + "@id": "bts:Vein" }, { - "@id": "bts:Ur" + "@id": "bts:Vertebra" }, { - "@id": "bts:Uz" - }, + "@id": "bts:PeripheralBloodMononuclearCell" + } + ], + "sms:displayName": "Dataset Tissue", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Gonad", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Gonad", + "rdfs:subClassOf": [ { - "@id": "bts:Ve" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Vi" + "@id": "bts:FileTissue" }, { - "@id": "bts:Vo" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Wa" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Gonad", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Alveolus", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Alveolus", + "rdfs:subClassOf": [ { - "@id": "bts:Wo" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Xh" + "@id": "bts:FileTissue" }, { - "@id": "bts:Yi" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Yo" + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alveolus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Caecum", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Caecum", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Za" + "@id": "bts:FileTissue" }, { - "@id": "bts:Zh" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Zu" + "@id": "bts:DSPDatasetTissue" } ], - "sms:displayName": "Resource Language", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like", - "regex search [a-z]{2}" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Caecum", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceContributors", + "@id": "bts:Cancer-AssociatedFibroblast", "@type": "rdfs:Class", - "rdfs:comment": "The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.", - "rdfs:label": "ResourceContributors", + "rdfs:comment": "TBD", + "rdfs:label": "Cancer-AssociatedFibroblast", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Contributors", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "sms:displayName": "Cancer-Associated Fibroblast", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceSecondaryTopic", + "@id": "bts:ConnectiveandSoftTissue", "@type": "rdfs:Class", - "rdfs:comment": "Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.", - "rdfs:label": "ResourceSecondaryTopic", + "rdfs:comment": "TBD", + "rdfs:label": "ConnectiveandSoftTissue", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Secondary Topic", + "sms:displayName": "Connective and Soft Tissue", "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { - "@id": "bts:ResourceLicense", + "@id": "bts:Embryo", "@type": "rdfs:Class", - "rdfs:comment": "The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceLicense", + "rdfs:comment": "TBD", + "rdfs:label": "Embryo", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:AAL" - }, - { - "@id": "bts:ADSL" - }, + "sms:displayName": "Embryo", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:EmbryonicHeart", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "EmbryonicHeart", + "rdfs:subClassOf": [ { - "@id": "bts:AFL-1.1" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:AFL-1.2" + "@id": "bts:FileTissue" }, { - "@id": "bts:AFL-2.0" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:AFL-2.1" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Embryonic Heart", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Endothelium", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Endothelium", + "rdfs:subClassOf": [ { - "@id": "bts:AFL-3.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:AGPL-1.0" + "@id": "bts:FileTissue" }, { - "@id": "bts:AGPL-3.0" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:AMDPLPA" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Endothelium", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Epithelium", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Epithelium", + "rdfs:subClassOf": [ { - "@id": "bts:AML" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:AMPAS" + "@id": "bts:FileTissue" }, { - "@id": "bts:ANTLR-PD" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:APAFML" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Epithelium", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Genitourinary", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Genitourinary", + "rdfs:subClassOf": [ { - "@id": "bts:APL-1.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:APSL-1.0" + "@id": "bts:FileTissue" }, { - "@id": "bts:APSL-1.1" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:APSL-1.2" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genitourinary", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HairFollicle", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HairFollicle", + "rdfs:subClassOf": [ { - "@id": "bts:APSL-2.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Abstyles" + "@id": "bts:FileTissue" }, { - "@id": "bts:Adobe-2006" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Adobe-Glyph" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Hair Follicle", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HeartMuscle", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HeartMuscle", + "rdfs:subClassOf": [ { - "@id": "bts:Afmparse" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Aladdin" + "@id": "bts:FileTissue" }, { - "@id": "bts:Apache-1.0" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Apache-1.1" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Heart Muscle", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Intra-AbdominalLymphNodes", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Intra-AbdominalLymphNodes", + "rdfs:subClassOf": [ { - "@id": "bts:Apache-2.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Artistic-1.0" + "@id": "bts:FileTissue" }, { - "@id": "bts:Artistic-1.0-Perl" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Artistic-1.0-cl8" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Intra-Abdominal Lymph Nodes", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IntrathoracicLymphNodes", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "IntrathoracicLymphNodes", + "rdfs:subClassOf": [ { - "@id": "bts:Artistic-2.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:BSD-2-Clause" + "@id": "bts:FileTissue" }, { - "@id": "bts:BSD-2-Clause-FreeBSD" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:BSD-2-Clause-NetBSD" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Intrathoracic Lymph Nodes", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Lymph", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Lymph", + "rdfs:subClassOf": [ { - "@id": "bts:BSD-3-Clause" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:BSD-3-Clause-Attribution" + "@id": "bts:FileTissue" }, { - "@id": "bts:BSD-3-Clause-Clear" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:BSD-3-Clause-LBNL" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Lymph", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:LymphNodesofAxillaorArm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "LymphNodesofAxillaorArm", + "rdfs:subClassOf": [ { - "@id": "bts:BSD-3-Clause-No-Nuclear-License" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:BSD-3-Clause-No-Nuclear-License-2014" + "@id": "bts:FileTissue" }, { - "@id": "bts:BSD-3-Clause-No-Nuclear-Warranty" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:BSD-4-Clause" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Lymph Nodes of Axilla or Arm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:LymphNodesofInguinalRegionorLeg", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "LymphNodesofInguinalRegionorLeg", + "rdfs:subClassOf": [ { - "@id": "bts:BSD-4-Clause-UC" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:BSD-Protection" + "@id": "bts:FileTissue" }, { - "@id": "bts:BSD-Source-Code" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:BSD-style" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Lymph Nodes of Inguinal Region or Leg", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:LymphaticSystem", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "LymphaticSystem", + "rdfs:subClassOf": [ { - 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Multiple values permitted, comma separated.", + "rdfs:label": "DatasetPubmedId", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "oj", + "sms:displayName": "Dataset Pubmed Id", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Om", + "@id": "bts:EducationalResource", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Om", + "rdfs:comment": "Manifest for describing educational resources.", + "rdfs:label": "EducationalResource", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "om", + "sms:displayName": "Educational Resource", "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Or", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Or", - "rdfs:subClassOf": [ + "sms:requiresComponent": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:GrantView" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "or", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Os", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Os", - "rdfs:subClassOf": [ + "sms:requiresDependency": [ { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Component" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Os", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Pa", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pa", - "rdfs:subClassOf": [ + "@id": "bts:EducationalResourceId" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:GrantViewKey" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Pa", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Pi", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pi", - "rdfs:subClassOf": [ + "@id": "bts:StudyKey" + }, + { + "@id": "bts:DatasetViewKey" + }, + { + "@id": "bts:PublicationViewKey" + }, + { + "@id": "bts:ToolViewKey" + }, + { + "@id": "bts:ResourceTitle" + }, + { + "@id": "bts:ResourceLink" + }, + { + "@id": "bts:ResourceDoi" + }, + { + "@id": "bts:ResourceTopic" + }, + { + "@id": "bts:ResourceActivityType" + }, + { + "@id": "bts:ResourcePrimaryFormat" + }, + { + "@id": "bts:ResourceIntendedUse" + }, + { + "@id": "bts:ResourcePrimaryAudience" + }, + { + "@id": "bts:ResourceEducationalLevel" + }, + { + "@id": "bts:ResourceDescription" + }, + { + "@id": "bts:ResourceOriginInstitution" + }, { "@id": "bts:ResourceLanguage" + }, + { + "@id": "bts:ResourceContributors" + }, + { + "@id": "bts:ResourceSecondaryTopic" + }, + { + "@id": "bts:ResourceLicense" + }, + { + "@id": "bts:ResourceUseRequirements" + }, + { + "@id": "bts:ResourceAlias" + }, + { + "@id": "bts:ResourceInternalIdentifier" + }, + { + "@id": "bts:ResourceMediaAccessibility" + }, + { + "@id": "bts:ResourceAccessHazard" + }, + { + "@id": "bts:ResourceDatasetAlias" + }, + { + "@id": "bts:ResourceToolLink" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "pi", - "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Pl", + "@id": "bts:EducationalResourceId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pl", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "EducationalResourceId", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "pl", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "EducationalResource_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:Ps", + "@id": "bts:ResourceTitle", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ps", + "rdfs:comment": "Title of the item.", + "rdfs:label": "ResourceTitle", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ps", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Title", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:Pt", + "@id": "bts:ResourceLink", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pt", + "rdfs:comment": "The URL that links to the item.", + "rdfs:label": "ResourceLink", "rdfs:subClassOf": [ { - "@id": "bts:ChannelMetalSymbol" - }, - { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Pt", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Link", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] }, { - "@id": "bts:Qu", + "@id": "bts:ResourceDoi", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Qu", + "rdfs:comment": "The Digital Object Identifier (DOI) associated with the educational resource.", + "rdfs:label": "ResourceDoi", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "qu", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Doi", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] }, { - "@id": "bts:Rm", + "@id": "bts:ResourceTopic", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rm", + "rdfs:comment": "General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceTopic", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "rm", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Rn", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rn", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:ComputationalModelDevelopment" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Rn", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ro", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ro", - "rdfs:subClassOf": [ + "@id": "bts:ComputationalResource" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ro", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ru", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ru", - "rdfs:subClassOf": [ + "@id": "bts:Diversity/Equity/Inclusion" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:DrugResistance/Sensitivity" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Ru", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Rw", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rw", - "rdfs:subClassOf": [ + "@id": "bts:Epigenetics" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "rw", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sa", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sa", - "rdfs:subClassOf": [ + "@id": "bts:Evolution" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sa", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sc", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sc", - "rdfs:subClassOf": [ + "@id": "bts:ExperimentalModelDevelopment" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Heterogeneity" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sc", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sd", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sd", - "rdfs:subClassOf": [ + "@id": "bts:Immunotherapy" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sd", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Se", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Se", - "rdfs:subClassOf": [ + "@id": "bts:Mechano-genetics" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Mechano-resistance" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Se", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sg", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sg", - "rdfs:subClassOf": [ + "@id": "bts:Metabolism" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Metastasis" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sg", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Si", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Si", - "rdfs:subClassOf": [ + "@id": "bts:Method/AssayDevelopment" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Microenvironment" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Si", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sk", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sk", - "rdfs:subClassOf": [ + "@id": "bts:OncogenicStress" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sk", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sl", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sl", - "rdfs:subClassOf": [ + "@id": "bts:Other" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sl", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sm", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sm", - "rdfs:subClassOf": [ + "@id": "bts:Outreach" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:PlatformDevelopment" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sm", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sn", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sn", - "rdfs:subClassOf": [ + "@id": "bts:TrainingMaterial" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:TumorProgression" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sn", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:So", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "So", - "rdfs:subClassOf": [ + "@id": "bts:Tumor-Immune" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "so", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sq", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sq", - "rdfs:subClassOf": [ + "@id": "bts:ComputerScience" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sq", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sr", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sr", - "rdfs:subClassOf": [ + "@id": "bts:EnvironmentalScience" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:InformationScience" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sr", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ss", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ss", - "rdfs:subClassOf": [ + "@id": "bts:EducationalTechnology" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ss", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:St", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "St", - "rdfs:subClassOf": [ + "@id": "bts:Anatomy/Physiology" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "st", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Su", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Su", - "rdfs:subClassOf": [ + "@id": "bts:Biology" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "su", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sv", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sv", - "rdfs:subClassOf": [ + "@id": "bts:Ecology" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sv", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sw", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sw", - "rdfs:subClassOf": [ + "@id": "bts:Genetics" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sw", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ta", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ta", - "rdfs:subClassOf": [ + "@id": "bts:Nutrition" + }, { - "@id": "bts:IndividualPrimaryTumorStage" + "@id": "bts:MeasurementandData" }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:StatisticsandProbability" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Ta", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Te", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Te", - "rdfs:subClassOf": [ + "@id": "bts:Chemistry" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Physics" }, { - "@id": "bts:ResourceLanguage" + "@id": "bts:SystemsBiology" + }, + { + "@id": "bts:PatientAdvocacy" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Te", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Topic", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Tg", + "@id": "bts:ResourceActivityType", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tg", + "rdfs:comment": "The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceActivityType", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "tg", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Th", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Th", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Activity/Lab" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Th", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ti", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ti", - "rdfs:subClassOf": [ + "@id": "bts:Assessment" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:CaseStudy" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Ti", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tk", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tk", - "rdfs:subClassOf": [ + "@id": "bts:DataSet" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "tk", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tl", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tl", - "rdfs:subClassOf": [ + "@id": "bts:Diagram/Illustration" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:FullCourse" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Tl", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tn", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tn", - "rdfs:subClassOf": [ + "@id": "bts:Game" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "tn", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:To", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "To", - "rdfs:subClassOf": [ + "@id": "bts:Homework/Assignment" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "to", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tr", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tr", - "rdfs:subClassOf": [ + "@id": "bts:Interactive" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "tr", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ts", - "rdfs:subClassOf": [ + "@id": "bts:Lecture" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:LectureNotes" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Ts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tt", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tt", - "rdfs:subClassOf": [ + "@id": "bts:Lesson" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "tt", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tw", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tw", - "rdfs:subClassOf": [ + "@id": "bts:LessonPlan" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "tw", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ty", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ty", - "rdfs:subClassOf": [ + "@id": "bts:Module" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ty", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ug", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ug", - "rdfs:subClassOf": [ + "@id": "bts:PrimarySource" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ug", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Uk", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Uk", - "rdfs:subClassOf": [ + "@id": "bts:Reading" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "uk", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ur", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ur", - "rdfs:subClassOf": [ + "@id": "bts:Simulation" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ur", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Uz", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Uz", - "rdfs:subClassOf": [ + "@id": "bts:StudentGuide" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "uz", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ve", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ve", - "rdfs:subClassOf": [ + "@id": "bts:Syllabus" + }, { - "@id": "bts:ResourceLanguage" + "@id": "bts:Teaching/LearningStrategy" + }, + { + "@id": "bts:Textbook" + }, + { + "@id": "bts:UnitofStudy" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ve", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Activity Type", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Vi", + "@id": "bts:ResourcePrimaryFormat", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Vi", + "rdfs:comment": "The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourcePrimaryFormat", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "vi", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Vo", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Vo", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Audio" + }, + { + "@id": "bts:Braille/BNF" + }, + { + "@id": "bts:Downloadabledocs" + }, + { + "@id": "bts:EBook" + }, + { + "@id": "bts:Graphics/Photos" + }, + { + "@id": "bts:Interactive" + }, + { + "@id": "bts:Mobile" + }, + { + "@id": "bts:Text/HTML" + }, + { + "@id": "bts:Video" + }, + { + "@id": "bts:Other" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "vo", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Primary Format", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Wa", + "@id": "bts:ResourceIntendedUse", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Wa", + "rdfs:comment": "The purpose of the material for education. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceIntendedUse", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "wa", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Wo", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Wo", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Curriculum/Instruction" + }, + { + "@id": "bts:Assessment" + }, + { + "@id": "bts:ProfessionalDevelopment" + }, + { + "@id": "bts:Other" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "wo", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Intended Use", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Xh", + "@id": "bts:ResourcePrimaryAudience", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Xh", + "rdfs:comment": "The intended end user audience for the resource. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourcePrimaryAudience", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "xh", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Yi", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Yi", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Student" + }, + { + "@id": "bts:Teacher" + }, + { + "@id": "bts:Administrator" + }, + { + "@id": "bts:Parent" + }, + { + "@id": "bts:Professor" + }, + { + "@id": "bts:GeneralAudience" + }, + { + "@id": "bts:Other" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "yi", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Primary Audience", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Yo", + "@id": "bts:ResourceEducationalLevel", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Yo", + "rdfs:comment": "Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceEducationalLevel", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "yo", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Za", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Za", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Preschool" + }, + { + "@id": "bts:LowerPrimary" + }, + { + "@id": "bts:UpperPrimary" + }, + { + "@id": "bts:MiddleSchool" + }, + { + "@id": "bts:HighSchool" + }, + { + "@id": "bts:CommunityCollege/LowerDivision" + }, + { + "@id": "bts:College/UpperDivision" + }, + { + "@id": "bts:Graduate/Profession" + }, + { + "@id": "bts:Career/Technical" + }, + { + "@id": "bts:AdultEducation" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "za", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Educational Level", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Zh", + "@id": "bts:ResourceDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Zh", + "rdfs:comment": "Abstract or summary of the item.", + "rdfs:label": "ResourceDescription", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "zh", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Description", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:Zu", + "@id": "bts:ResourceOriginInstitution", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Zu", + "rdfs:comment": "Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceOriginInstitution", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "zu", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Origin Institution", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:ResourceGrantNumber", + "@id": "bts:ResourceLanguage", "@type": "rdfs:Class", - "rdfs:comment": "The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceGrantNumber", + "rdfs:comment": "Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceLanguage", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -235106,7382 +237767,6663 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Affiliated/Non-GrantAssociated" + "@id": "bts:Aa" }, { - "@id": "bts:CA184897" + "@id": "bts:Ab" }, { - "@id": "bts:CA184898" + "@id": "bts:Ae" }, { - "@id": "bts:CA188388" + "@id": "bts:Af" }, { - "@id": "bts:CA193313" + "@id": "bts:Ak" }, { - "@id": "bts:CA193417" + "@id": "bts:Am" }, { - "@id": "bts:CA193419" + "@id": "bts:An" }, { - "@id": "bts:CA193461" + "@id": "bts:Ar" }, { - "@id": "bts:CA193489" + "@id": "bts:As" }, { - "@id": "bts:CA195469" + "@id": "bts:Av" }, { - "@id": "bts:CA199315" + "@id": "bts:Ay" }, { - "@id": "bts:CA202123" + "@id": "bts:Az" }, { - "@id": "bts:CA202144" + "@id": "bts:Ba" }, { - "@id": "bts:CA202177" + "@id": "bts:Be" }, { - "@id": "bts:CA202229" + "@id": "bts:Bg" }, { - "@id": "bts:CA202241" + "@id": "bts:Bh" }, { - "@id": "bts:CA209891" + "@id": "bts:Bi" }, { - "@id": "bts:CA209923" + "@id": "bts:Bm" }, { - "@id": "bts:CA209971" + "@id": "bts:Bn" }, { - "@id": "bts:CA209975" + "@id": "bts:Bo" }, { - "@id": "bts:CA209978" + "@id": "bts:Br" }, { - "@id": "bts:CA209988" + "@id": "bts:Bs" }, { - "@id": "bts:CA209992" + "@id": "bts:Ca" }, { - "@id": "bts:CA209997" + "@id": "bts:Ce" }, { - "@id": "bts:CA210152" + "@id": "bts:Ch" }, { - "@id": "bts:CA210173" + "@id": "bts:Co" }, { - "@id": "bts:CA210180" + "@id": "bts:Cr" }, { - "@id": "bts:CA210181" + "@id": "bts:Cs" }, { - "@id": "bts:CA210184" + "@id": "bts:Cu" }, { - "@id": "bts:CA210190" + "@id": "bts:Cv" }, { - "@id": "bts:CA214282" + "@id": "bts:Cy" }, { - "@id": "bts:CA214292" + "@id": "bts:Da" }, { - "@id": "bts:CA214297" + "@id": "bts:De" }, { - "@id": "bts:CA214300" + "@id": "bts:Dv" }, { - "@id": "bts:CA214354" + "@id": "bts:Dz" }, { - "@id": "bts:CA214369" + "@id": "bts:Ee" }, { - "@id": "bts:CA214381" + "@id": "bts:El" }, { - "@id": "bts:CA214411" + "@id": "bts:En" }, { - "@id": "bts:CA215709" + "@id": "bts:Eo" }, { - "@id": "bts:CA215794" + "@id": "bts:Es" }, { - "@id": "bts:CA215798" + "@id": "bts:Et" }, { - "@id": "bts:CA215845" + "@id": "bts:Eu" }, { - "@id": "bts:CA215848" + "@id": "bts:Fa" }, { - "@id": "bts:CA217297" + "@id": "bts:Ff" }, { - "@id": "bts:CA217376" + "@id": "bts:Fi" }, { - "@id": "bts:CA217377" + "@id": "bts:Fj" }, { - "@id": "bts:CA217378" + "@id": "bts:Fo" }, { - "@id": "bts:CA217450" + "@id": "bts:Fr" }, { - "@id": "bts:CA217456" + "@id": "bts:Fy" }, { - "@id": "bts:CA217514" + "@id": "bts:Ga" }, { - "@id": "bts:CA217613" + "@id": "bts:Gd" }, { - "@id": "bts:CA217617" + "@id": "bts:Gl" }, { - "@id": "bts:CA217655" + "@id": "bts:Gn" }, { - "@id": "bts:CA220378" + "@id": "bts:Gu" }, { - "@id": "bts:CA223976" + "@id": "bts:Gv" }, { - "@id": "bts:CA224012" + "@id": "bts:Ha" }, { - "@id": "bts:CA224013" + "@id": "bts:He" }, { - "@id": "bts:CA224044" + "@id": "bts:Hi" }, { - "@id": "bts:CA225088" + "@id": "bts:Ho" }, { - "@id": "bts:CA225566" + "@id": "bts:Hr" }, { - "@id": "bts:CA227136" + "@id": "bts:Ht" }, { - "@id": "bts:CA227544" + "@id": "bts:Hu" }, { - "@id": "bts:CA227550" + "@id": "bts:Hy" }, { - "@id": "bts:CA228608" + "@id": "bts:Hz" }, { - "@id": "bts:CA228963" + "@id": "bts:Ia" }, { - "@id": "bts:CA231978" + "@id": "bts:Id" }, { - "@id": "bts:CA232137" + "@id": "bts:Ie" }, { - "@id": "bts:CA232161" + "@id": "bts:Ig" }, { - "@id": "bts:CA232209" + "@id": "bts:Ii" }, { - "@id": "bts:CA232216" + "@id": "bts:Ik" }, { - "@id": "bts:CA232382" + "@id": "bts:Io" }, { - "@id": "bts:CA232517" + "@id": "bts:Is" }, { - "@id": "bts:CA234787" + "@id": "bts:It" }, { - "@id": "bts:CA235747" + "@id": "bts:Iu" }, { - "@id": "bts:CA238475" + "@id": "bts:Ja" }, { - "@id": "bts:CA238720" + "@id": "bts:Jv" }, { - "@id": "bts:CA238728" + "@id": "bts:Ka" }, { - "@id": "bts:CA240301" + "@id": "bts:Kg" }, { - "@id": "bts:CA241137" + "@id": "bts:Ki" }, { - "@id": "bts:CA241927" + "@id": "bts:Kj" }, { - "@id": "bts:CA243004" + "@id": "bts:Kk" }, { - "@id": "bts:CA243007" + "@id": "bts:Kl" }, { - "@id": "bts:CA243072" + "@id": "bts:Km" }, { - "@id": "bts:CA243073" + "@id": "bts:Kn" }, { - "@id": "bts:CA243075" + "@id": "bts:Ko" }, { - "@id": "bts:CA244100" + "@id": "bts:Kr" }, { - "@id": "bts:CA244101" + "@id": "bts:Ks" }, { - "@id": "bts:CA244107" + "@id": "bts:Ku" }, { - "@id": "bts:CA244109" + "@id": "bts:Kv" }, { - "@id": "bts:CA245313" + "@id": "bts:Kw" }, { - "@id": "bts:CA248890" + "@id": "bts:Ky" }, { - "@id": "bts:CA249799" + "@id": "bts:La" }, { - "@id": "bts:CA250040" + "@id": "bts:Lb" }, { - "@id": "bts:CA250044" + "@id": "bts:Lg" }, { - "@id": "bts:CA250046" + "@id": "bts:Li" }, { - "@id": "bts:CA250481" + "@id": "bts:Ln" }, { - "@id": "bts:CA251443" + "@id": "bts:Lo" }, { - "@id": "bts:CA253248" + "@id": "bts:Lt" }, { - "@id": "bts:CA253472" + "@id": "bts:Lu" }, { - "@id": "bts:CA253540" + "@id": "bts:Lv" }, { - "@id": "bts:CA253547" + "@id": "bts:Mg" }, { - "@id": "bts:CA253553" + "@id": "bts:Mh" }, { - "@id": "bts:CA254200" + "@id": "bts:Mi" }, { - "@id": "bts:CA254886" + "@id": "bts:Mk" }, { - "@id": "bts:CA256054" + "@id": "bts:Ml" }, { - 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Multiple contributor names should be provided as a comma-separated list.", + "rdfs:label": "ResourceContributors", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "APL-1.0", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Contributors", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:APSL-1.0", + "@id": "bts:ResourceSecondaryTopic", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "APSL-1.0", + "rdfs:comment": "Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.", + "rdfs:label": "ResourceSecondaryTopic", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "APSL-1.0", + "sms:displayName": "Resource Secondary Topic", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:APSL-1.1", + "@id": "bts:ResourceLicense", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "APSL-1.1", + "rdfs:comment": "The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceLicense", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "APSL-1.1", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:APSL-1.2", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "APSL-1.2", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:AAL" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "APSL-1.2", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:APSL-2.0", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "APSL-2.0", - "rdfs:subClassOf": [ + "@id": "bts:ADSL" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:AFL-1.1" }, 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Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceUseRequirements", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-2.0", + "sms:displayName": "Resource Use Requirements", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:CECILL-2.1", + "@id": "bts:ResourceAlias", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CECILL-2.1", + "rdfs:comment": "A unique identifier (DOI, Synapse ID) for the item, if it exists.", + "rdfs:label": "ResourceAlias", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-2.1", + "sms:displayName": "Resource Alias", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:CECILL-B", + "@id": "bts:ResourceInternalIdentifier", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CECILL-B", + "rdfs:comment": "The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceInternalIdentifier", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-B", + "sms:displayName": "Resource Internal Identifier", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CECILL-C", + "@id": "bts:ResourceMediaAccessibility", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CECILL-C", + "rdfs:comment": "Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceMediaAccessibility", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-C", + "schema:rangeIncludes": [ + { + "@id": "bts:AlternativeText" + }, + { + "@id": "bts:AudioDescription" + }, + { + "@id": "bts:Braille" + }, + { + "@id": "bts:Captions" + }, + { + "@id": "bts:ChemML" + }, + { + "@id": "bts:DescribedMath" + }, + { + "@id": "bts:DisplayTransformability" + }, + { + "@id": "bts:Haptic" + }, + { + "@id": "bts:HighContrast" + }, + { + "@id": "bts:LargePrint" + }, + { + "@id": "bts:Latex" + }, + { + "@id": "bts:LongDescription" + }, + { + "@id": "bts:MathML" + }, + { + "@id": "bts:NemethBraille" + }, + { + "@id": "bts:SignLanguage" + }, + { + "@id": "bts:StructuralNavigation" + }, + { + "@id": "bts:TactileGraphics" + }, + { + "@id": "bts:TextTranscript" + } + ], + "sms:displayName": "Resource Media Accessibility", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CNRI-Jython", + "@id": "bts:ResourceAccessHazard", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CNRI-Jython", + "rdfs:comment": "Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceAccessHazard", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CNRI-Jython", + "schema:rangeIncludes": [ + { + "@id": "bts:Flashing" + }, + { + "@id": "bts:Motion" + }, + { + "@id": "bts:Simulation" + }, + { + "@id": "bts:Sound" + } + ], + "sms:displayName": "Resource Access Hazard", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CNRI-Python", + "@id": "bts:ResourceDatasetAlias", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CNRI-Python", + "rdfs:comment": "URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceDatasetAlias", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CNRI-Python", + "sms:displayName": "Resource Dataset Alias", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CNRI-Python-GPL-Compatible", + "@id": "bts:ResourceToolLink", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CNRI-Python-GPL-Compatible", + "rdfs:comment": "URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceToolLink", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CNRI-Python-GPL-Compatible", + "sms:displayName": "Resource Tool Link", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CPAL-1.0", + "@id": "bts:GrantView", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CPAL-1.0", + "rdfs:comment": "The denormalized manifest for grant submission.", + "rdfs:label": "GrantView", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CPAL-1.0", + "sms:displayName": "Grant View", "sms:required": "sms:false", + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:GrantViewId" + }, + { + "@id": "bts:GrantName" + }, + { + "@id": "bts:GrantNumber" + }, + { + "@id": "bts:GrantAbstract" + }, + { + "@id": "bts:GrantType" + }, + { + "@id": "bts:GrantThemeName" + }, + { + "@id": "bts:GrantInstitutionName" + }, + { + "@id": "bts:GrantInstitutionAlias" + }, + { + "@id": "bts:GrantInvestigator" + }, + { + "@id": "bts:GrantConsortiumName" + }, + { + "@id": "bts:GrantStartDate" + }, + { + "@id": "bts:GrantEndDate" + }, + { + "@id": "bts:NIHRePORTERLink" + }, + { + "@id": "bts:DurationofFunding" + }, + { + "@id": "bts:EmbargoEndDate" + }, + { + "@id": "bts:GrantSynapseTeam" + }, + { + "@id": "bts:GrantSynapseProject" + } + ], "sms:validationRules": [] }, { - "@id": "bts:CPL-1.0", + "@id": "bts:ComputationalModelDevelopment", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CPL-1.0", + "rdfs:label": "ComputationalModelDevelopment", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:ResourceTopic" }, { - "@id": "bts:ToolLicense" + "@id": "bts:GrantThemeName" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CPL-1.0", + "sms:displayName": "Computational Model Development", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CPOL-1.02", + "@id": "bts:ComputationalResource", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CPOL-1.02", + "rdfs:label": "ComputationalResource", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:ResourceTopic" }, { - "@id": "bts:ToolLicense" + "@id": "bts:GrantThemeName" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CPOL-1.02", + "sms:displayName": "Computational Resource", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CUA-OPL-1.0", + "@id": "bts:Diversity/Equity/Inclusion", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CUA-OPL-1.0", + "rdfs:label": "Diversity/Equity/Inclusion", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CUA-OPL-1.0", + "sms:displayName": "Diversity/Equity/Inclusion", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Caldera", + "@id": "bts:DrugResistance/Sensitivity", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Caldera", + "rdfs:label": "DrugResistance/Sensitivity", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Caldera", + "sms:displayName": "Drug Resistance/Sensitivity", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ClArtistic", + "@id": "bts:Epigenetics", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ClArtistic", + "rdfs:label": "Epigenetics", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" + }, + { + "@id": "bts:ToolTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ClArtistic", + "sms:displayName": "Epigenetics", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Condor-1.1", + "@id": "bts:Evolution", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Condor-1.1", + "rdfs:label": "Evolution", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Condor-1.1", + "sms:displayName": "Evolution", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Crossword", + "@id": "bts:ExperimentalModelDevelopment", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Crossword", + "rdfs:label": "ExperimentalModelDevelopment", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Crossword", + "sms:displayName": "Experimental Model Development", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CrystalStacker", + "@id": "bts:Heterogeneity", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CrystalStacker", + "rdfs:label": "Heterogeneity", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CrystalStacker", + "sms:displayName": "Heterogeneity", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cube", + "@id": "bts:Mechano-genetics", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cube", + "rdfs:label": "Mechano-genetics", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cube", + "sms:displayName": "Mechano-genetics", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:D-FSL-1.0", + "@id": "bts:Mechano-resistance", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "D-FSL-1.0", + "rdfs:label": "Mechano-resistance", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "D-FSL-1.0", + "sms:displayName": "Mechano-resistance", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DOC", + "@id": "bts:Metabolism", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "DOC", + "rdfs:label": "Metabolism", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "DOC", + "sms:displayName": "Metabolism", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DSDP", + "@id": "bts:Method/AssayDevelopment", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "DSDP", + "rdfs:label": "Method/AssayDevelopment", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:GrantThemeName" }, { - "@id": "bts:ToolLicense" + "@id": "bts:ResourceTopic" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "DSDP", + "sms:displayName": "Method/Assay Development", "sms:required": "sms:false", "sms:validationRules": [] }, { - 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Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceGrantNumber", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -242492,10867 +244434,10945 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:10-cellRNASequencing" - }, - { - "@id": "bts:16SRibosomalGeneSequencingAssay" - }, - { - "@id": "bts:3'RNA-seq" - }, - { - "@id": "bts:3C" - }, - { - "@id": "bts:3C-qPCR" - }, - { - "@id": "bts:3DATAC-PALM" + "@id": "bts:Affiliated/Non-GrantAssociated" }, { - "@id": "bts:3DBioprinting" + "@id": "bts:CA184897" }, { - "@id": "bts:3DCellCulture" + "@id": "bts:CA184898" }, { - "@id": "bts:4C" + "@id": "bts:CA188388" }, { - "@id": "bts:5C" + "@id": "bts:CA193313" }, { - "@id": "bts:ATAC-Seq" + "@id": "bts:CA193417" }, { - "@id": "bts:ATPBioluminescenceAssay" + "@id": "bts:CA193419" }, { - "@id": "bts:AffinityPurificationMassSpectrometry" + "@id": "bts:CA193461" }, { - "@id": "bts:Allograft" + "@id": "bts:CA193489" }, { - "@id": "bts:AmpliconSequencing" + "@id": "bts:CA195469" }, { - 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{ + "@id": "bts:Chondroblastoma" + }, + { + "@id": "bts:Choriocarcinoma" + }, + { + "@id": "bts:ChronicLymphocyticLeukemia" + }, + { + "@id": "bts:ChronicMyeloidLeukemia" + }, + { + "@id": "bts:ClearCellRenalCellCarcinoma" + }, + { + "@id": "bts:ColonAdenocarcinoma" + }, + { + "@id": "bts:ColonCarcinoma" + }, + { + "@id": "bts:ColorectalAdenocarcinoma" + }, + { + "@id": "bts:ColorectalAdenoma" + }, + { + "@id": "bts:ColorectalCarcinoma" + }, + { + "@id": "bts:ColorectalNeoplasm" + }, + { + "@id": "bts:CombinedHepatocellularCarcinomaandCholangiocarcinoma" + }, + { + "@id": "bts:Craniopharyngioma" + }, + { + "@id": "bts:CutaneousTCellLymphoma" + }, + { + "@id": "bts:DiffuseLargeB-CellLymphoma" + }, + { + "@id": "bts:DuctalBreastCarcinomaInSitu" + }, + { + "@id": "bts:DysembryoplasticNeuroepithelialNeoplasm" + }, + { + "@id": "bts:EndometrialCarcinoma" + }, + { + "@id": "bts:EndometrialNeoplasm" + }, + { + "@id": "bts:Ependymoma" + }, + { + "@id": "bts:EsophagealAdenocarcinoma" + }, + { + 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}, + { + "@id": "bts:HighGradeOvarianSerousAdenocarcinoma" + }, + { + "@id": "bts:HistiocyticSarcoma" + }, + { + "@id": "bts:HodgkinLymphoma" + }, + { + "@id": "bts:IntestinalNeoplasm" + }, + { + "@id": "bts:IntrahepaticCholangiocarcinoma" + }, + { + "@id": "bts:InvasiveDuctalBreastCarcinoma" + }, + { + "@id": "bts:KaposiSarcoma" + }, + { + "@id": "bts:Leiomyoma" + }, + { + "@id": "bts:Leukemia" + }, + { + "@id": "bts:LiverandIntrahepaticBileDuctCarcinoma" + }, + { + "@id": "bts:LiverandIntrahepaticBileDuctNeoplasm" + }, + { + "@id": "bts:LowGradeGlioma" + }, + { + "@id": "bts:LuminalABreastCarcinoma" + }, + { + "@id": "bts:LungAdenocarcinoma" + }, + { + "@id": "bts:LungCarcinoma" + }, + { + "@id": "bts:LungNeoplasm" + }, + { + "@id": "bts:LungNon-SmallCellCarcinoma" + }, + { + "@id": "bts:LungSmallCellCarcinoma" + }, + { + "@id": "bts:LungSquamousCellCarcinoma" + }, + { + "@id": "bts:LymphoidLeukemia" + }, + { + "@id": "bts:Lymphoma" + }, + { + "@id": "bts:MalignantBrainNeoplasm" + }, 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Multiple values permitted, comma separated.", + "rdfs:label": "FileTissue", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin of lip; NOS", + "schema:rangeIncludes": [ + { + "@id": "bts:Gonad" + }, + { + "@id": "bts:AbdominalEsophagus" + }, + { + "@id": "bts:AdiposeTissue" + }, + { + "@id": "bts:AdrenalGland" + }, + { + "@id": "bts:Alveolus" + }, + { + "@id": "bts:Aorta" + }, + { + "@id": "bts:Artery" + }, + { + "@id": "bts:AscendingColon" + }, + { + "@id": "bts:BileDuct" + }, + { + "@id": "bts:Bladder" + }, + { + "@id": "bts:Blood" + }, + { + "@id": "bts:BloodVessel" + }, + { + "@id": "bts:Bone" + }, + { + "@id": "bts:BoneMarrow" + }, + { + "@id": "bts:Brain" + }, + { + "@id": "bts:Breast" + }, + { + "@id": "bts:Caecum" + }, + { + "@id": "bts:Cancer-AssociatedFibroblast" + }, + { + "@id": "bts:Cardia" + }, + { + "@id": "bts:Cartilage" + }, + { + "@id": "bts:CervixUteri" + }, + { + "@id": "bts:Choroid" + }, + { + "@id": "bts:Colon" + }, + { + "@id": "bts:ConnectiveandSoftTissue" + }, + { + "@id": "bts:Cornea" + }, + { + "@id": "bts:Duodenum" + }, + { + "@id": "bts:Ear" + }, + { + "@id": "bts:Embryo" + }, + { + "@id": "bts:EmbryonicHeart" + }, + { + "@id": "bts:Endocervix" + }, + { + "@id": "bts:Endometrium" + }, + { + "@id": "bts:Endothelium" + }, + { + "@id": "bts:Epithelium" + }, + { + "@id": "bts:Esophagus" + }, + { + "@id": "bts:Eye" + }, + { + "@id": "bts:FallopianTube" + }, + { + "@id": "bts:Foreskin" + }, + { + "@id": "bts:FrontalLobe" + }, + { + "@id": "bts:GastroesophagealJunction" + }, + { + "@id": "bts:GastrointestinalTract" + }, + { + "@id": "bts:Genitourinary" + }, + { + "@id": "bts:HairFollicle" + }, + { + "@id": "bts:HeadandNeck" + }, + { + "@id": "bts:Heart" + }, + { + "@id": "bts:HeartMuscle" + }, + { + "@id": "bts:HematopoieticSystem" + }, + { + "@id": "bts:Hippocampus" + }, + { + "@id": "bts:Intestine" + }, + { + "@id": "bts:Intra-AbdominalLymphNodes" + }, + { + "@id": "bts:IntrathoracicLymphNodes" + }, + { + "@id": "bts:Joint" + }, + { + "@id": "bts:Kidney" + }, + { + "@id": "bts:Larynx" + }, + { + "@id": "bts:Ligament" + }, + { + "@id": "bts:Liver" + }, + { + "@id": "bts:Lung" + }, + { + "@id": "bts:Lymph" + }, + { + "@id": "bts:LymphNode" + }, + { + "@id": "bts:LymphNodesofAxillaorArm" + }, + { + "@id": "bts:LymphNodesofInguinalRegionorLeg" + }, + { + "@id": "bts:LymphaticSystem" + }, + { + "@id": "bts:LymphoidTissue" + }, + { + "@id": "bts:MainBronchus" + }, + { + "@id": "bts:MammaryGland" + }, + { + "@id": "bts:Meninges" + }, + { + "@id": "bts:Mesenchyme" + }, + { + "@id": "bts:Mucosa" + }, + { + "@id": "bts:Muscle" + }, + { + "@id": "bts:NasalCavity" + }, + { + "@id": "bts:NervousSystem" + }, + { + "@id": "bts:NotApplicable" + }, + { + "@id": "bts:OlfactoryMucosa" + }, + { + "@id": "bts:Omentum" + }, + { + "@id": "bts:OralCavity" + }, + { + "@id": "bts:OralMucosa" + }, + { + "@id": "bts:Ovary" + }, + { + "@id": "bts:Pancreas" + }, + { + "@id": "bts:PelvicLymphNodes" + }, + { + "@id": "bts:PendingAnnotation" + }, + { + "@id": "bts:PeriodontalLigament" + }, + { + "@id": "bts:PeripheralNerves" + }, + { + "@id": "bts:Peritoneum" + }, + { + "@id": "bts:Pharynx" + }, + { + "@id": "bts:PituitaryGland" + }, + { + "@id": "bts:Placenta" + }, + { + "@id": "bts:Pleura" + }, + { + "@id": "bts:ProstateGland" + }, + { + "@id": "bts:Rectum" + }, + { + "@id": "bts:ReproductiveSystem" + }, + { + "@id": "bts:RespiratorySystem" + }, + { + "@id": "bts:SalivaryGland" + }, + { + "@id": "bts:Sclera" + }, + { + "@id": "bts:SinonasalTract" + }, + { + "@id": "bts:Skin" + }, + { + "@id": "bts:SmallIntestine" + }, + { + "@id": "bts:SpinalCord" + }, + { + "@id": "bts:Spleen" + }, + { + "@id": "bts:Stomach" + }, + { + "@id": "bts:SynovialMembrane" + }, + { + "@id": "bts:Tendon" + }, + { + "@id": "bts:Testis" + }, + { + "@id": "bts:Thymus" + }, + { + "@id": "bts:ThyroidGland" + }, + { + "@id": "bts:Tongue" + }, + { + "@id": "bts:Tonsil" + }, + { + "@id": "bts:Trachea" + }, + { + "@id": "bts:UmbilicalCord" + }, + { + "@id": "bts:Unspecified" + }, + { + "@id": "bts:Uterus" + }, + { + "@id": "bts:Vagina" + }, + { + "@id": "bts:VascularEndothelium" + }, + { + "@id": "bts:Vein" + }, + { + "@id": "bts:Vertebra" + }, + { + "@id": "bts:PeripheralBloodMononuclearCell" + } + ], + "sms:displayName": "File Tissue", "sms:required": "sms:false", - 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"schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Scrotum; NOS", - "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Roundligament", + "@id": "bts:FileViewId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Roundligament", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "FileViewId", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Round ligament", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "FileView_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:Retromolararea", + "@id": "bts:BiospecimenKey", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Retromolararea", + "rdfs:comment": "Unique Biospecimen_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.", + "rdfs:label": "BiospecimenKey", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Retromolar area", + "sms:displayName": "Biospecimen Key", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "matchAtLeastOne Biospecimen.Biospecimen_id Value" + ] }, { - "@id": "bts:Sublingualgland", + "@id": "bts:Filename", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sublingualgland", + "rdfs:comment": "The path of a file in Synapse, relative to the project. The file associated with the path will be annotated with attributes contained in this sheet.", + "rdfs:label": "Filename", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Shared" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Sublingual gland", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Filename", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:Stomach;NOS", + "@id": "bts:FileAlias", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Stomach;NOS", + "rdfs:comment": "A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.", + "rdfs:label": "FileAlias", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Stomach; NOS", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "File Alias", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:Splenicflexureofcolon", + "@id": "bts:FileAnatomicSite", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Splenicflexureofcolon", + "rdfs:comment": "The anatomic site associated with the data contained in this file.", + "rdfs:label": "FileAnatomicSite", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Splenic flexure of colon", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Spinalmeninges", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Spinalmeninges", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Spinal meninges", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Spinalcord", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Spinalcord", - "rdfs:subClassOf": [ + "@id": "bts:Accessorysinus;NOS" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Spinal cord", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Sphenoidsinus", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sphenoidsinus", - "rdfs:subClassOf": [ + "@id": "bts:Abdominalesophagus" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sphenoid sinus", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Spermaticcord", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Spermaticcord", - "rdfs:subClassOf": [ + "@id": "bts:Ascendingcolon" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Spermatic cord", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Shortbonesoflowerlimbandassociatedjoints", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Shortbonesoflowerlimbandassociatedjoints", - "rdfs:subClassOf": [ + "@id": "bts:Appendix" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Short bones of lower limb and associated joints", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Waldeyerring", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Waldeyerring", - "rdfs:subClassOf": [ + "@id": "bts:Aorticbodyandotherparaganglia" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Waldeyer ring", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Vulva;NOS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Vulva;NOS", - "rdfs:subClassOf": [ + "@id": "bts:Anteriorwallofnasopharynx" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Vulva; 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NOS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles", - "@type": "rdfs:Class", - "rdfs:comment": "Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.", - "rdfs:label": "NanoStringGeoMxAuxiliaryFiles", - "rdfs:subClassOf": [ + "@id": "bts:Connective;subcutaneousandothersofttissues;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMx Auxiliary Files", - "sms:required": "sms:false", - "sms:requiresDependency": [ + "@id": "bts:Connective;subcutaneousandothersofttissuesofupperlimbandshoulder" + }, { - "@id": "bts:Component" + "@id": "bts:Connective;subcutaneousandothersofttissuesoftrunk;NOS" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesId" + "@id": "bts:Connective;subcutaneousandothersofttissuesofthorax" }, { - "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile" + "@id": "bts:Connective;subcutaneousandothersofttissuesofpelvis" }, { - "@id": "bts:SynapseIDofGeoMxDSPPKCFile" + "@id": "bts:Connective;subcutaneousandothersofttissuesoflowerlimbandhip" }, { - "@id": "bts:SynapseIDofGeoMxLabWorksheetFile" + "@id": "bts:Connective;subcutaneousandothersofttissuesofhead;face;andneck" }, { - "@id": "bts:SynapseIDofGeoMxDSPConfigFile" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxAuxiliaryFilesId", - "rdfs:subClassOf": [ + "@id": "bts:Connective;subcutaneousandothersofttissuesofabdomen" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxAuxiliaryFiles_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile", - "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.", - "rdfs:label": "SynapseIDofGeoMxDSPROISegmentAnnotationFile", - "rdfs:subClassOf": [ + "@id": "bts:Bonesofskullandfaceandassociatedjoints" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx DSP ROI Segment Annotation File", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like", - "regex match syn\\d+" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxDSPPKCFile", - "@type": "rdfs:Class", - "rdfs:comment": "The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.", - "rdfs:label": "SynapseIDofGeoMxDSPPKCFile", - "rdfs:subClassOf": [ + "@id": "bts:Caudaequina" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx DSP PKC File", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like", - "regex match syn\\d+" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxLabWorksheetFile", - "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.", - "rdfs:label": "SynapseIDofGeoMxLabWorksheetFile", - "rdfs:subClassOf": [ + "@id": "bts:Carotidbody" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx Lab Worksheet File", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like", - "regex match syn\\d+" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxDSPConfigFile", - "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID of config.ini file generated by the GeoMx DSP workflow.", - "rdfs:label": "SynapseIDofGeoMxDSPConfigFile", - "rdfs:subClassOf": [ + "@id": "bts:Cardia;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx DSP Config File", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like", - "regex match syn\\d+" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPImaging", - "@type": "rdfs:Class", - "rdfs:comment": "Images acquired by the GeoMx instrument", - "rdfs:label": "NanoStringGeoMxDSPImaging", - "rdfs:subClassOf": [ + "@id": "bts:Broadligament" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMx DSP Imaging", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:Breast;NOS" + }, { - "@id": "bts:FileView" + "@id": "bts:Branchialcleft" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Brain;NOS" + }, { - "@id": "bts:Component" + "@id": "bts:Brainstem" }, { - "@id": "bts:NanoStringGeoMxDSPImagingId" + "@id": "bts:Borderoftongue" }, { - "@id": "bts:Filename" + "@id": "bts:Ethmoidsinus" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key" + "@id": "bts:Esophagus;NOS" }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Key" + "@id": "bts:Epididymis" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:Endometrium" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:Endocrinegland;NOS" }, { - "@id": "bts:GeoMxImagingChannelNames" + "@id": "bts:Endocervix" }, { - "@id": "bts:GeoMxImagingAOICoordinates" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPImagingId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPImagingId", - "rdfs:subClassOf": [ + "@id": "bts:Duodenum" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPImaging_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:Eyelid" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel1 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPLevel1.NanoStringGeoMxDSPLevel1_id Value" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel2Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel2Key", - "rdfs:subClassOf": [ + "@id": "bts:Eye;NOS" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel2 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPLevel2.NanoStringGeoMxDSPLevel2_id Value" - ] - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxAuxiliaryFilesKey", - "rdfs:subClassOf": [ + "@id": "bts:Extrahepaticbileduct" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxAuxiliaryFiles Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxAuxiliaryFiles.NanoStringGeoMxAuxiliaryFiles_id Value" - ] - }, - { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMXROISegmentAnnotationKey", - "rdfs:subClassOf": [ + "@id": "bts:Externalupperlip" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMXROISegmentAnnotation Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMXROISegmentAnnotation.NanoStringGeoMXROISegmentAnnotation_id Value" - ] - }, - { - "@id": "bts:GeoMxImagingChannelNames", - "@type": "rdfs:Class", - "rdfs:comment": "Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.", - "rdfs:label": "GeoMxImagingChannelNames", - "rdfs:subClassOf": [ + "@id": "bts:Externallowerlip" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Imaging Channel Names", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GeoMxImagingAOICoordinates", - "@type": "rdfs:Class", - "rdfs:comment": "Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.", - "rdfs:label": "GeoMxImagingAOICoordinates", - "rdfs:subClassOf": [ + "@id": "bts:Externallip;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Imaging AOI Coordinates", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel1", - "@type": "rdfs:Class", - "rdfs:comment": "Raw sequencing files from GeoMX experiments", - "rdfs:label": "NanoStringGeoMxDSPLevel1", - "rdfs:subClassOf": [ + "@id": "bts:Externalear" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMx DSP Level 1", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:Exocervix" + }, { - "@id": "bts:FileView" + "@id": "bts:Fundusuteri" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotation" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Fundusofstomach" + }, { - "@id": "bts:Component" + "@id": "bts:Frontalsinus" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Id" + "@id": "bts:Frontallobe" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:Floorofmouth;NOS" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:Fallopiantube" }, { - "@id": "bts:Filename" + "@id": "bts:Lymphnode;NOS" }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel1Id", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPLevel1Id", - "rdfs:subClassOf": [ + "@id": "bts:Lung;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel1_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:GeoMxDSPAssayType", - "@type": "rdfs:Class", - "rdfs:comment": "The assay type which was used for the GeoMx DSP pipeline.", - "rdfs:label": "GeoMxDSPAssayType", - "rdfs:subClassOf": [ + "@id": "bts:Lower-outerquadrantofbreast" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Lower-innerquadrantofbreast" + }, { - "@id": "bts:RNAnCounter" + "@id": "bts:Lowerthirdofesophagus" }, { - "@id": "bts:ProteinnCounter" + "@id": "bts:Lowerlobe;lung" }, { - "@id": "bts:ProteinNGS" + "@id": "bts:Lowerlimb;NOS" }, { - "@id": "bts:RNANGS" - } - ], - "sms:displayName": "GeoMx DSP Assay Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMXROISegmentAnnotation", - "@type": "rdfs:Class", - "rdfs:comment": "GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates.", - "rdfs:label": "NanoStringGeoMXROISegmentAnnotation", - "rdfs:subClassOf": [ + "@id": "bts:Lowergum" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMX ROI Segment Annotation", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:Longbonesofupperlimb;scapulaandassociatedjoints" + }, { - "@id": "bts:Biospecimen" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Longbonesoflowerlimbandassociatedjoints" + }, { - "@id": "bts:Component" + "@id": "bts:Liver" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationId" + "@id": "bts:Lip;NOS" }, { - "@id": "bts:BiospecimenKey" + "@id": "bts:Lingualtonsil" }, { - "@id": "bts:GeoMxScanname" + "@id": "bts:Lessercurvatureofstomach;NOS" }, { - "@id": "bts:GeoMxROIName" + "@id": "bts:Lateralwalloforopharynx" }, { - "@id": "bts:GeoMxAOIName" + "@id": "bts:Lateralwallofnasopharynx" }, { - "@id": "bts:GeoMxTags" + "@id": "bts:Lateralwallofbladder" }, { - "@id": "bts:GeoMxROIXCoordinate" + "@id": "bts:Lateralfloorofmouth" }, { - "@id": "bts:GeoMxROIYCoordinate" + "@id": "bts:Larynx;NOS" }, { - "@id": "bts:GeoMxAOIXCoordinate" + "@id": "bts:Laryngealcartilage" }, { - "@id": "bts:GeoMxAOIYCoordinate" + "@id": "bts:Axillarytailofbreast" }, { - "@id": "bts:GeoMxQCstatus" + "@id": "bts:Gallbladder" }, { - "@id": "bts:GeoMxScanHeight" + "@id": "bts:Gastricantrum" }, { - "@id": "bts:GeoMxScanWidth" + "@id": "bts:Isthmusuteri" }, { - "@id": "bts:GeoMxScanOffsetX" + "@id": "bts:IsletsofLangerhans" }, { - "@id": "bts:GeoMxScanOffsetY" + "@id": "bts:Intrathoraciclymphnodes" }, { - "@id": "bts:GeoMxBindingDensity" + "@id": "bts:Intrahepaticbileduct" }, { - "@id": "bts:GeoMxPositivenormfactor" + "@id": "bts:Intra-abdominallymphnodes" }, { - "@id": "bts:GeoMxSurfacearea" + "@id": "bts:Intestinaltract;NOS" }, { - "@id": "bts:GeoMxNucleicount" + "@id": "bts:Ill-definedsiteswithinrespiratorysystem" }, { - "@id": "bts:GeoMxTissueStain" + "@id": "bts:Ileum" }, { - "@id": "bts:GeoMxSlidename" + "@id": "bts:Hypopharynx;NOS" }, { - "@id": "bts:NGSRawreads" + "@id": "bts:Hypopharyngealaspectofaryepiglotticfold" }, { - "@id": "bts:NGSStitchedreads" + "@id": "bts:Hepaticflexureofcolon" }, { - "@id": "bts:NGSAlignedreads" + "@id": "bts:Hematopoieticsystem;NOS" }, { - "@id": "bts:NGSDeduplicatedreads" + "@id": "bts:Heart" }, { - "@id": "bts:NGSTrimmedreads" + "@id": "bts:Head;faceorneck;NOS" }, { - "@id": "bts:NGSSequencingCoverage" + "@id": "bts:Headofpancreas" }, { - "@id": "bts:NGSMapQ30" + "@id": "bts:Hardpalate" }, { - "@id": "bts:GeoMxNegativecountmean" + "@id": "bts:Myometrium" }, { - "@id": "bts:GeoMxNoTemplateControlcount" + "@id": "bts:Mucosaofupperlip" }, { - "@id": "bts:GeoMxExcludedOutlierProbes" + "@id": "bts:Mucosaoflowerlip" }, { - "@id": "bts:GeoMxLimitofQuantification" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:RNAnCounter", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RNAnCounter", - "rdfs:subClassOf": [ + "@id": "bts:Mucosaoflip;NOS" + }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RNA nCounter", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ProteinnCounter", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ProteinnCounter", - "rdfs:subClassOf": [ + "@id": "bts:Mouth;NOS" + }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Protein nCounter", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ProteinNGS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ProteinNGS", - "rdfs:subClassOf": [ + "@id": "bts:Middlethirdofesophagus" + }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Protein NGS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RNANGS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RNANGS", - "rdfs:subClassOf": [ + "@id": "bts:Middlelobe;lung" + }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RNA NGS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel2", - "@type": "rdfs:Class", - "rdfs:comment": "Processed count conversion (DCC/RCC) files from GeoMX experiments", - "rdfs:label": "NanoStringGeoMxDSPLevel2", - "rdfs:subClassOf": [ + "@id": "bts:Middleear" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMx DSP Level 2", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:Meninges;NOS" + }, { - "@id": "bts:FileView" + "@id": "bts:Medullaofadrenalgland" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Mediastinum;NOS" + }, { - "@id": "bts:Component" + "@id": "bts:Meckeldiverticulum" }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Id" + "@id": "bts:Maxillarysinus" }, { - "@id": "bts:Filename" + "@id": "bts:Mandible" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key" + "@id": "bts:Majorsalivarygland;NOS" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:Mainbronchus" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:Oropharynx;NOS" }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel2Id", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPLevel2Id", - "rdfs:subClassOf": [ + "@id": "bts:Orbit;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel2_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel3", - "@type": "rdfs:Class", - "rdfs:comment": "Files contain processed count data from the NanoString GeoMx DSP Pipeline.", - "rdfs:label": "NanoStringGeoMxDSPLevel3", - "rdfs:subClassOf": [ + "@id": "bts:Opticnerve" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMx DSP Level 3", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:Olfactorynerve" + }, { - "@id": "bts:FileView" + "@id": "bts:Occipitallobe" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Nipple" + }, { - "@id": "bts:Component" + "@id": "bts:Nervoussystem;NOS" }, { - "@id": "bts:NanoStringGeoMxDSPLevel3Id" + "@id": "bts:Nasalcavity" }, { - "@id": "bts:Filename" + "@id": "bts:Penis;NOS" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key" + "@id": "bts:Pelvis;NOS" }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Key" + "@id": "bts:Pelviclymphnodes" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel3Id", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPLevel3Id", - "rdfs:subClassOf": [ + "@id": "bts:Pelvicbones;sacrum;coccyxandassociatedjoints" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel3_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMXROISegmentAnnotationId", - "rdfs:subClassOf": [ + "@id": "bts:Parotidgland" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMXROISegmentAnnotation_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:GeoMxScanname", - "@type": "rdfs:Class", - "rdfs:comment": "GeoMx Scan name (as appears in Segment Summary)", - "rdfs:label": "GeoMxScanname", - "rdfs:subClassOf": [ + "@id": "bts:Parietallobe" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan name", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:GeoMxROIName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of Region of Interest corresponding to file. Multiple names should be comma-separated", - "rdfs:label": "GeoMxROIName", - "rdfs:subClassOf": [ + "@id": "bts:Paraurethralgland" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx ROI Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GeoMxAOIName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of Area of Illumination corresponding to file. Multiple names should be comma-separated", - "rdfs:label": "GeoMxAOIName", - "rdfs:subClassOf": [ + "@id": "bts:Parathyroidgland" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx AOI Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GeoMxTags", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GeoMxTags", - "rdfs:subClassOf": [ + "@id": "bts:Parametrium" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Tags", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GeoMxROIXCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Region of Interest X location within the image", - "rdfs:label": "GeoMxROIXCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:Pancreaticduct" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx ROI X Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxROIYCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Region of Interest Y location within the image", - "rdfs:label": "GeoMxROIYCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:Pancreas;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx ROI Y Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxAOIXCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Area of Illumination X location within the image", - "rdfs:label": "GeoMxAOIXCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:Palate;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx AOI X Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxAOIYCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Area of Illumination Y location within the image", - "rdfs:label": "GeoMxAOIYCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:Ovary" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx AOI Y Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxQCstatus", - "@type": "rdfs:Class", - "rdfs:comment": "ROI quality control flag as reported by the application", - "rdfs:label": "GeoMxQCstatus", - "rdfs:subClassOf": [ + "@id": "bts:Lacrimalgland" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx QC status", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GeoMxScanHeight", - "@type": "rdfs:Class", - "rdfs:comment": "Height of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanHeight", - "rdfs:subClassOf": [ + "@id": "bts:Labiumminus" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Height", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxScanWidth", - "@type": "rdfs:Class", - "rdfs:comment": "Width of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanWidth", - "rdfs:subClassOf": [ + "@id": "bts:Labiummajus" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Width", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxScanOffsetX", - "@type": "rdfs:Class", - "rdfs:comment": "Offset X of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanOffsetX", - "rdfs:subClassOf": [ + "@id": "bts:Kidney;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Offset X", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxScanOffsetY", - "@type": "rdfs:Class", - "rdfs:comment": "Offset Y of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanOffsetY", - "rdfs:subClassOf": [ + "@id": "bts:Jejunum" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Offset Y", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxBindingDensity", - "@type": "rdfs:Class", - "rdfs:comment": "The binding density as reported by the application", - "rdfs:label": "GeoMxBindingDensity", - "rdfs:subClassOf": [ + "@id": "bts:Lymphnodesofmultipleregions" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Binding Density", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxPositivenormfactor", - "@type": "rdfs:Class", - "rdfs:comment": "The Positive Control Normalization factor calculated using pos-hyb controls", - "rdfs:label": "GeoMxPositivenormfactor", - "rdfs:subClassOf": [ + "@id": "bts:Lymphnodesofinguinalregionorleg" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Positive norm factor", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxSurfacearea", - "@type": "rdfs:Class", - "rdfs:comment": "Surface area of the ROI in square microns (Β΅m2)", - "rdfs:label": "GeoMxSurfacearea", - "rdfs:subClassOf": [ + "@id": "bts:Lymphnodesofaxillaorarm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Surface area", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxNucleicount", - "@type": "rdfs:Class", - "rdfs:comment": "Number of nuclei detected in the segment (if applicable)", - "rdfs:label": "GeoMxNucleicount", - "rdfs:subClassOf": [ + "@id": "bts:Otherspecifiedpartsofpancreas" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Nuclei count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxTissueStain", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GeoMxTissueStain", - "rdfs:subClassOf": [ + "@id": "bts:Otherspecifiedpartsofmalegenitalorgans" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Tissue Stain", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GeoMxSlidename", - "@type": "rdfs:Class", - "rdfs:comment": "Similar to a Run ID, the slide name indicates the slide a given ROI is linked to (as reported in Segment Summary).", - "rdfs:label": "GeoMxSlidename", - "rdfs:subClassOf": [ + "@id": "bts:Otherspecifiedpartsoffemalegenitalorgans" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Slide name", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSRawreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSRawreads", - "rdfs:subClassOf": [ + "@id": "bts:Otherill-definedsites" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Raw reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSStitchedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSStitchedreads", - "rdfs:subClassOf": [ + "@id": "bts:Laryngealcommissure" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Stitched reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSAlignedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSAlignedreads", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionsoforopharynx" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Aligned reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSDeduplicatedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSDeduplicatedreads", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofvulva" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Deduplicated reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSTrimmedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSTrimmedreads", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofurinaryorgans" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Trimmed reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSSequencingCoverage", - "@type": "rdfs:Class", - "rdfs:comment": "Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length)", - "rdfs:label": "NGSSequencingCoverage", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionoftonsil" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Sequencing Coverage", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSMapQ30", - "@type": "rdfs:Class", - "rdfs:comment": "Number of reads with Quality >= 30.", - "rdfs:label": "NGSMapQ30", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionoftongue" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS MapQ30", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxNegativecountmean", - "@type": "rdfs:Class", - "rdfs:comment": "The geometric mean of the unique negative probes in a GeoMx panel that do not target mRNA and establish the background count level per segment", - "rdfs:label": "GeoMxNegativecountmean", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofstomach" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Negative count mean", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxNoTemplateControlcount", - "@type": "rdfs:Class", - "rdfs:comment": "The number of reads detected by the GeoMx probe panel in the control associated with this ROI.", - "rdfs:label": "GeoMxNoTemplateControlcount", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofsmallintestine" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx No Template Control count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxExcludedOutlierProbes", - "@type": "rdfs:Class", - "rdfs:comment": "The list of probes excluded from analysis.", - "rdfs:label": "GeoMxExcludedOutlierProbes", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofskin" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Excluded Outlier Probes", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxLimitofQuantification", - "@type": "rdfs:Class", - "rdfs:comment": "The calculated limit of quantification associated with the segment.", - "rdfs:label": "GeoMxLimitofQuantification", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofretroperitoneumandperitoneum" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Limit of Quantification", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxInSituNegativemedian", - "@type": "rdfs:Class", - "rdfs:comment": "Is the median of all negative control probes for a given segment. A measure of signal to background for each segment.", - "rdfs:label": "GeoMxInSituNegativemedian", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofrespiratorysystemandintrathoracicorgans" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx In Situ Negative median", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxBiologicalprobemedian", - "@type": "rdfs:Class", - "rdfs:comment": "Is the median count from all probes except the negative control probes. A measure of signal to background for each segment", - "rdfs:label": "GeoMxBiologicalprobemedian", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofpenis" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Biological probe median", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxSequencingSaturation", - "@type": "rdfs:Class", - "rdfs:comment": "The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. 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"rdfs:label": "GrantNumber", - "rdfs:subClassOf": [ + "@id": "bts:Overlappinglesionofotherandunspecifiedpartsofmouth" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Grant Number", - "sms:required": "sms:true", - "sms:validationRules": [ - "regex search ^CA\\d{6}$" - ] - }, - { - "@id": "bts:GrantAbstract", - "@type": "rdfs:Class", - "rdfs:comment": "Abstract for the grant", - "rdfs:label": "GrantAbstract", - "rdfs:subClassOf": [ + "@id": "bts:Upperrespiratorytract;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Grant Abstract", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:GrantType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of grant", - "rdfs:label": "GrantType", - "rdfs:subClassOf": [ + "@id": "bts:Upperlobe;lung" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Upperlimb;NOS" + }, { - "@id": "bts:R01" + "@id": "bts:UpperGum" }, { - "@id": "bts:R21" + "@id": "bts:Unknownprimarysite" }, { - "@id": "bts:R37" + "@id": "bts:Undescendedtestis" }, { - "@id": "bts:U01" + "@id": "bts:Trigoneofbladder" }, { - "@id": "bts:U24" + "@id": "bts:Transversecolon" }, { - "@id": "bts:U54" - } - ], - "sms:displayName": "Grant Type", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:R01", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "R01", - "rdfs:subClassOf": [ + "@id": "bts:Trachea" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "R01", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:R21", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "R21", - "rdfs:subClassOf": [ + "@id": "bts:Tonsillarpillar" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "R21", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:R37", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "R37", - "rdfs:subClassOf": [ + "@id": "bts:Tonsillarfossa" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "R37", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:U01", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "U01", - "rdfs:subClassOf": [ + "@id": "bts:Tonsil;NOS" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "U01", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:U24", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "U24", - "rdfs:subClassOf": [ + "@id": "bts:Tongue;NOS" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "U24", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:U54", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "U54", - "rdfs:subClassOf": [ + "@id": "bts:Thyroidgland" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "U54", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GrantViewId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "GrantViewId", - "rdfs:subClassOf": [ + "@id": "bts:Thymus" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GrantView_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:GrantThemeName", - "@type": "rdfs:Class", - "rdfs:comment": "Theme(s) associated with the grant. 1...*", - "rdfs:label": "GrantThemeName", - "rdfs:subClassOf": [ + "@id": "bts:Thorax;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Thoracicesophagus" + }, { - "@id": "bts:ComputationalModelDevelopment" + "@id": "bts:Testis;NOS" }, { - "@id": "bts:ComputationalResource" + "@id": "bts:Temporallobe" }, { - "@id": "bts:DrugResistance/Sensitivity" + "@id": "bts:Tailofpancreas" }, { - "@id": "bts:Epigenetics" + "@id": "bts:Supraglottis" }, { - "@id": "bts:Evolution" + "@id": "bts:Superiorwallofnasopharynx" }, { - "@id": "bts:ExperimentalModelDevelopment" + "@id": "bts:Submandibulargland" }, { - "@id": "bts:Heterogeneity" + "@id": "bts:Lymphnodesofhead;faceandneck" }, { - "@id": "bts:Immunotherapy" + "@id": "bts:Bladder;NOS" }, { - "@id": "bts:Mechano-genetics" + "@id": "bts:Centralportionofbreast" }, { - "@id": "bts:Mechano-resistance" + "@id": "bts:Femalegenitaltract;NOS" }, { - 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(e.g. Harvard University). 1...*", - "rdfs:label": "GrantInstitutionName", - "rdfs:subClassOf": [ + "@id": "bts:Boneoflimb;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Ventricle;NOS" + }, { - "@id": "bts:AlbertEinsteinCollegeofMedicine" + "@id": "bts:Specifiedpartsofperitoneum" }, { - "@id": "bts:ArizonaStateUniversity" + "@id": "bts:Ventralsurfaceoftongue;NOS" }, { - "@id": "bts:AuburnUniversity" + "@id": "bts:Overlappinglesionofnasopharynx" }, { - "@id": "bts:BarrowNeurologicalInstitute" + "@id": "bts:Overlappinglesionofmalegenitalorgans" }, { - "@id": "bts:BaylorCollegeOfMedicine" + "@id": "bts:Overlappinglesionofmajorsalivaryglands" }, { - "@id": "bts:BeckmanResearchInstituteofCityofHope" + "@id": "bts:Overlappinglesionoflung" }, { - "@id": "bts:BethIsraelDeaconessHospital" + "@id": "bts:Overlappinglesionoflip;oralcavityandpharynx" }, { - "@id": "bts:BostonMedicalCenter" + "@id": "bts:Overlappinglesionoflip" }, { - "@id": "bts:BostonUniversity" + "@id": "bts:Overlappinglesionoflarynx" }, { - "@id": "bts:BrighamandWomensHospital" + "@id": "bts:Overlappinglesionofill-definedsites" }, { - "@id": "bts:CaliforniaInstituteofTechnology" + "@id": "bts:Overlappinglesionofhypopharynx" }, { - "@id": "bts:ChildrensHospitalofPhiladelphia" + "@id": "bts:Overlappinglesionoffloorofmouth" }, { - "@id": "bts:CityOfHope" + "@id": "bts:Overlappinglesionoffemalegenitalorgans" }, { - "@id": "bts:ClemsonUniversity" + "@id": "bts:Overlappinglesionofesophagus" }, { - "@id": "bts:ClevelandClinic" + "@id": "bts:Overlappinglesionofendocrineglandsandrelatedstructures" }, { - "@id": "bts:ColdSpringHarborLaboratory" + "@id": "bts:Overlappinglesionofdigestivesystem" }, { - "@id": "bts:ColumbiaUniversity" + "@id": "bts:Softpalate;NOS" }, { - "@id": "bts:CornellUniversity" + "@id": "bts:Smallintestine;NOS" }, { - "@id": "bts:Dana-FarberCancerInstitute" + "@id": "bts:Skin;NOS" }, { - "@id": "bts:DartmouthCollege" + "@id": "bts:Skinofupperlimbandshoulder" }, { - "@id": "bts:DukeUniversity" + "@id": "bts:Skinoftrunk" }, { - "@id": "bts:EmoryUniversity" + "@id": "bts:Skinofscalpandneck" }, { - "@id": "bts:GeorgiaInstituteofTechnology" + "@id": "bts:Skinofotherandunspecifiedpartsofface" }, { - "@id": "bts:HarvardMedicalSchool" + "@id": "bts:Skinoflowerlimbandhip" }, { - "@id": "bts:HarvardUniversity" + "@id": "bts:Skinoflip;NOS" }, { - "@id": "bts:HebrewUniversityofJerusalem" + "@id": "bts:Sigmoidcolon" }, { - "@id": "bts:HoustonMethodist" + "@id": "bts:Scrotum;NOS" }, { - "@id": "bts:IndianaUniversity" + "@id": "bts:Roundligament" }, { - "@id": "bts:IndianaUniversity-PurdueUniversityIndianapolis" + "@id": "bts:Retroperitoneum" }, { - "@id": "bts:InstituteforSystemsBiology" + "@id": "bts:Retromolararea" }, { - "@id": "bts:JacksonLaboratory" + "@id": "bts:Sublingualgland" }, { - "@id": "bts:JohnsHopkinsUniversity" + "@id": "bts:Subglottis" }, { - "@id": "bts:LurieChildren'sHospital" + "@id": "bts:Stomach;NOS" }, { - "@id": "bts:MassachusettsGeneralHospital" + "@id": "bts:Splenicflexureofcolon" }, { - "@id": "bts:MassachusettsInstituteofTechnology" + "@id": "bts:Spleen" }, { - "@id": "bts:MayoClinic" + "@id": "bts:Spinalmeninges" }, { - "@id": "bts:MemorialSloanKetteringCancerCenter" + "@id": "bts:Spinalcord" }, { - "@id": "bts:MoffittCancerCenter" + "@id": "bts:Sphenoidsinus" }, { - "@id": "bts:NortheasternUniversity" + "@id": "bts:Spermaticcord" }, { - "@id": "bts:NewYorkUniversity" + "@id": "bts:Shortbonesoflowerlimbandassociatedjoints" }, { - "@id": "bts:NorthwesternUniversity" + "@id": "bts:NotReported" }, { - "@id": "bts:OregonHealth&ScienceUniversity" + "@id": "bts:Unknown" }, { - "@id": "bts:PacificNorthwestNationalLaboratory" + "@id": "bts:Waldeyerring" }, { - "@id": "bts:PurdueUniversity" + "@id": "bts:Vulva;NOS" }, { - "@id": "bts:RockefellerUniversity" + "@id": "bts:Vestibuleofmouth" }, { - "@id": "bts:SageBionetworks" + "@id": "bts:Vertebralcolumn" }, { - "@id": "bts:SalkInstituteforBiologicalStudies" + "@id": "bts:Vallecula" }, { - "@id": "bts:St.JudeChildren'sResearchHospital" + "@id": "bts:Vagina;NOS" }, { - "@id": "bts:StanfordUniversity" + "@id": "bts:Uvula" }, { - "@id": "bts:StonyBrookUniversity" + "@id": "bts:Uterus;NOS" }, { - "@id": "bts:TheUniversityofTexasHealthScienceCenteratSanAntonio" + "@id": "bts:Uterineadnexa" }, { - "@id": "bts:UniversityofAlabamaatBirmingham" + "@id": "bts:Urinarysystem;NOS" }, { - "@id": "bts:UniversityofArizona" + "@id": "bts:Urethra" }, { - "@id": "bts:UniversityofArkansasatFayetteville" + "@id": "bts:Uretericorifice" }, { - "@id": "bts:UniversityofCalifornia;Berkeley" + "@id": "bts:Ureter" }, { - "@id": "bts:UniversityofCalifornia;Irvine" + "@id": "bts:Urachus" }, { - "@id": "bts:UniversityofCalifornia;LosAngeles" + "@id": "bts:Upper-outerquadrantofbreast" }, { - "@id": "bts:UniversityofCalifornia;SanDiego" + "@id": "bts:Upper-innerquadrantofbreast" }, { - "@id": "bts:UniversityofCalifornia;SanFrancisco" + "@id": "bts:Upperthirdofesophagus" }, { - "@id": "bts:UniversityofChicago" + "@id": "bts:Shortbonesofupperlimbandassociatedjoints" }, { - "@id": "bts:UniversityofChicagoMedicalCenter" + "@id": "bts:Rib;sternum;clavicleandassociatedjoints" }, { - "@id": "bts:UniversityofColoradoDenver" + "@id": "bts:Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder" }, { - "@id": "bts:UniversityofDelaware" + "@id": "bts:Peripheralnervesandautonomicnervoussystemoftrunk;NOS" }, { - "@id": "bts:UniversityofFlorida" + "@id": "bts:Peripheralnervesandautonomicnervoussystemofthorax" }, { - "@id": "bts:UniversityofIllinois" + "@id": "bts:Peripheralnervesandautonomicnervoussystemofpelvis" }, { - "@id": "bts:UniversityofIllinoisatChicago" + "@id": "bts:Peripheralnervesandautonomicnervoussystemoflowerlimbandhip" }, { - "@id": "bts:UniversityofMassachusettsMedicalSchool" + "@id": "bts:Peripheralnervesandautonomicnervoussystemofhead;face;andneck" }, { - "@id": "bts:UniversityofMiami" + "@id": "bts:Peripheralnervesandautonomicnervoussystemofabdomen" }, { - "@id": "bts:UniversityofMichigan" + "@id": "bts:Retina" }, { - "@id": "bts:UniversityofNevadaReno" + "@id": "bts:Reticuloendothelialsystem;NOS" }, { - "@id": "bts:UniversityofMinnesota" + "@id": "bts:Renalpelvis" }, { - "@id": "bts:UniversityofNewSouthWales" + "@id": "bts:Rectum;NOS" }, { - "@id": "bts:UniversityofNorthCarolinaatChapelHill" + "@id": "bts:Rectosigmoidjunction" }, { - "@id": "bts:UniversityofPennsylvania" + "@id": "bts:Pyriformsinus" }, { - "@id": "bts:UniversityofPittsburgh" + "@id": "bts:Pylorus" }, { - "@id": "bts:UniversityofSouthernCalifornia" + "@id": "bts:Prostategland" }, { - "@id": "bts:UniversityofTexasMDAndersonCancerCenter" + "@id": "bts:Prepuce" }, { - "@id": "bts:UniversityofTexasSouthwesternMedicalCenter" + "@id": "bts:Posteriorwalloforopharynx" }, { - "@id": "bts:UniversityofTexasatAustin" + "@id": "bts:Posteriorwallofnasopharynx" }, { - "@id": "bts:UniversityofUtah" + "@id": "bts:Overlappinglesionofcorpusuteri" }, { - "@id": "bts:UniversityofVirginia" + "@id": "bts:Overlappinglesionofconnective;subcutaneousandothersofttissues" }, { - "@id": "bts:UniversityofWashington" + "@id": "bts:Overlappinglesionofcolon" }, { - "@id": "bts:UniversityofWisconsin-Madison" + "@id": "bts:Overlappinglesionofcervixuteri" }, { - "@id": "bts:VanderbiltUniversity" + "@id": "bts:Overlappinglesionofbreast" }, { - "@id": "bts:WashingtonUniversityinSt.Louis" + "@id": "bts:Overlappinglesionofbrain" }, { - "@id": "bts:WakeForest" + "@id": "bts:Overlappinglesionofbladder" }, { - "@id": "bts:WeillCornellMedicine" + "@id": "bts:Overlappinglesionofbiliarytract" }, { - "@id": "bts:WistarInstitute" + "@id": "bts:Overlappinglesionofaccessorysinuses" }, { - "@id": "bts:YaleUniversity" + "@id": "bts:Overlappinglesionofrectum;anusandanalcanal" + }, + { + "@id": "bts:Overlappinglesionofperipheralnervesandautonomicnervoussystem" + }, + { + "@id": "bts:Overlappinglesionofheart;mediastinumandpleura" + }, + { + "@id": "bts:Overlappinglesionofeyeandadnexa" + }, + { + "@id": "bts:Overlappinglesionofbrainandcentralnervoussystem" + }, + { + "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilageoflimbs" + }, + { + "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilage" + }, + { + "@id": "bts:Posteriorwallofhypopharynx" + }, + { + "@id": "bts:Posteriorwallofbladder" + }, + { + "@id": "bts:Posteriormediastinum" + }, + { + "@id": "bts:Postcricoidregion" + }, + { + "@id": "bts:Pleura;NOS" } ], - "sms:displayName": "Grant Institution Name", + "sms:displayName": "File Anatomic Site", "sms:required": "sms:true", "sms:validationRules": [ "list like" ] }, { - "@id": "bts:GrantInstitutionAlias", + "@id": "bts:FileFormat", "@type": "rdfs:Class", - "rdfs:comment": "The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*", - "rdfs:label": "GrantInstitutionAlias", + "rdfs:comment": "The format of the file described by this entry.", + "rdfs:label": "FileFormat", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -253363,284 +255383,255 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:AECM" - }, - { - "@id": "bts:ASU" - }, - { - "@id": "bts:AU" - }, - { - "@id": "bts:BCM" - }, - { - "@id": "bts:BIDMC" + "@id": "bts:AVI" }, { - "@id": "bts:BMC" + "@id": "bts:BAI" }, { - "@id": "bts:BRI" + "@id": "bts:BAM" }, { - "@id": "bts:BU" + "@id": "bts:BED" }, { - "@id": "bts:BWH" + "@id": "bts:CDS" }, { - "@id": "bts:Barrow" + "@id": "bts:CHP" }, { - "@id": "bts:CHOP" + "@id": "bts:COOL" }, { - "@id": "bts:COH" + "@id": "bts:CSV" }, { - "@id": "bts:CSHL" + "@id": "bts:DAE" }, { - "@id": "bts:Caltech" + "@id": "bts:DB" }, { - "@id": "bts:Clemson" + "@id": "bts:DSStore" }, { - "@id": "bts:ClevelandClinic" + "@id": "bts:FASTA" }, { - "@id": "bts:Columbia" + "@id": "bts:FASTQ" }, { - "@id": "bts:Cornell" + "@id": "bts:FCS" }, { - "@id": "bts:DFCI" + "@id": "bts:FIG" }, { - "@id": "bts:Dartmouth" + "@id": "bts:FREQ" }, { - "@id": "bts:Duke" + "@id": "bts:GCG" }, { - "@id": "bts:Emory" + "@id": "bts:GCT" }, { - "@id": "bts:GTech" + "@id": "bts:GCTx" }, { - "@id": "bts:HMS" + "@id": "bts:GFF3" }, { - "@id": "bts:HUJI" + "@id": "bts:GTF" }, { - "@id": "bts:Harvard" + "@id": "bts:GZIPFormat" }, { - "@id": "bts:HoustonMethodist" + "@id": "bts:HDF" }, { - "@id": "bts:ISB" + "@id": "bts:HDF5" }, { - "@id": "bts:IU" + "@id": "bts:HTML" }, { - "@id": "bts:IUPUI" + "@id": "bts:IDAT" }, { - "@id": "bts:JHU" + "@id": "bts:JPG" }, { - "@id": "bts:JacksonLaboratory" + "@id": "bts:JSON" }, { - "@id": "bts:LurieChildren'sHospital" + "@id": "bts:LIF" }, { - "@id": "bts:MGH" + "@id": "bts:MAP" }, { - "@id": "bts:MIT" + "@id": "bts:MAT" }, { - "@id": "bts:MSKCC" + "@id": "bts:MATLABscript" }, { - "@id": "bts:Mayo" + "@id": "bts:MSF" }, { - "@id": "bts:Moffitt" + "@id": "bts:MTX" }, { - "@id": "bts:NEU" + "@id": "bts:PDF" }, { - "@id": "bts:NU" + "@id": "bts:PNG" }, { - "@id": "bts:NYU" + "@id": "bts:PZFX" }, { - "@id": "bts:OHSU" + "@id": "bts:PythonScript" }, { - "@id": "bts:PNNL" + "@id": "bts:RFileFormat" }, { - "@id": "bts:Pitt" + "@id": "bts:RAW" }, { - "@id": "bts:Purdue" + "@id": "bts:RDS" }, { - "@id": "bts:RockefellerUniversity" + "@id": "bts:ROUT" }, { - "@id": "bts:SBU" + "@id": "bts:RPROJ" }, { - "@id": "bts:Sage" + "@id": "bts:RTF" }, { - "@id": "bts:Salk" + "@id": "bts:SGI" }, { - "@id": "bts:StJude" + "@id": "bts:SRA" }, { - "@id": "bts:Stanford" + "@id": "bts:STAT" }, { - "@id": "bts:UMiami" + "@id": "bts:TARFormat" }, { - "@id": "bts:UA" + "@id": "bts:TDF" }, { - "@id": "bts:UARK" + "@id": "bts:TIFF" }, { - "@id": "bts:UAB" + "@id": "bts:TSV" }, { - "@id": "bts:UCBerkeley" + "@id": "bts:TXT" }, { - "@id": "bts:UCD" + "@id": "bts:VCF" }, { - "@id": "bts:UCI" + "@id": "bts:WIG" }, { - "@id": "bts:UCLA" + "@id": "bts:XML" }, { - "@id": "bts:UCMC" + "@id": "bts:ZIP" }, { - "@id": "bts:UCSD" + "@id": "bts:Bed12" }, { - "@id": "bts:UCSF" + "@id": "bts:Bedgraph" }, { - "@id": "bts:UChicago" + "@id": "bts:Cel" }, { - "@id": "bts:UD" + "@id": "bts:Cloupe" }, { - "@id": "bts:UFL" + "@id": "bts:Docx" }, { - "@id": "bts:UIC" + "@id": "bts:MzIdentML" }, { - "@id": "bts:UMMS" + "@id": "bts:MzXML" }, { - "@id": "bts:UMichigan" + "@id": "bts:Pptx" }, { - "@id": "bts:UMinn" + "@id": "bts:Rcc" }, { - "@id": "bts:UNC" + "@id": "bts:Xls" }, { - "@id": "bts:UNR" + "@id": "bts:Xlsx" }, { - "@id": "bts:UNSW" + "@id": "bts:MGF" }, { - "@id": "bts:UPenn" + "@id": "bts:BIGWIG" }, { - "@id": "bts:USC" + "@id": "bts:H5AD" }, { - "@id": "bts:UTAustin" + "@id": "bts:H5" }, { - "@id": "bts:UTSouthwestern" + "@id": "bts:SF" }, { - "@id": "bts:UTHSCSA" + "@id": "bts:PKL" }, { - "@id": "bts:UUtah" + "@id": "bts:BPM" }, { - "@id": "bts:UVA" + "@id": "bts:Unspecified" }, { - "@id": "bts:UW" + "@id": "bts:PendingAnnotation" }, { - "@id": "bts:UWM" + "@id": "bts:Maf" }, { - "@id": "bts:UniversityofIllinois" + "@id": "bts:CLS" }, { - "@id": "bts:UniversityofTexasMDAndersonCancerCenter" + "@id": "bts:SCN" }, { - "@id": "bts:Vanderbilt" - }, - { - "@id": "bts:WUSTL" - }, - { - "@id": "bts:WCM" - }, - { - "@id": "bts:WakeForest" - }, - { - "@id": "bts:Wistar" - }, - { - "@id": "bts:Yale" + "@id": "bts:SVS" } ], - "sms:displayName": "Grant Institution Alias", + "sms:displayName": "File Format", "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { - "@id": "bts:GrantInvestigator", + "@id": "bts:FileLongitudinalGroup", "@type": "rdfs:Class", - "rdfs:comment": "Investigator(s) associated witht the grant. 1...*", - "rdfs:label": "GrantInvestigator", + "rdfs:comment": "A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment", + "rdfs:label": "FileLongitudinalGroup", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -253649,17 +255640,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Grant Investigator", - "sms:required": "sms:true", + "sms:displayName": "File Longitudinal Group", + "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "str" ] }, { - "@id": "bts:GrantConsortiumName", + "@id": "bts:FileLongitudinalEventType", "@type": "rdfs:Class", - "rdfs:comment": "Consortium(s) associated with the grant. 1...1", - "rdfs:label": "GrantConsortiumName", + "rdfs:comment": "The type of event to which File Longitudinal Total Time Elapsed is related", + "rdfs:label": "FileLongitudinalEventType", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -253670,48 +255661,23 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:CCBIR" - }, - { - "@id": "bts:CSBC" - }, - { - "@id": "bts:HTAN" - }, - { - "@id": "bts:ICBP" - }, - { - "@id": "bts:MetNet" - }, - { - "@id": "bts:NCI" - }, - { - "@id": "bts:NCIClinicalandTranslationalExploratory/DevelopmentalStudies" - }, - { - "@id": "bts:PDMC" - }, - { - "@id": "bts:PS-ON" - }, - { - "@id": "bts:SageBionetworks" + "@id": "bts:Enrollment" }, { - "@id": "bts:TEC" + "@id": "bts:Baseline" } ], - "sms:displayName": "Grant Consortium Name", - "sms:required": "sms:true", - "sms:validationRules": [] + "sms:displayName": "File Longitudinal Event Type", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:GrantStartDate", + "@id": "bts:FileLongitudinalSequenceIdentifier", "@type": "rdfs:Class", - "rdfs:comment": "The start date of the grant YYYY-MM-DD format", - "rdfs:label": "GrantStartDate", + "rdfs:comment": "The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.", + "rdfs:label": "FileLongitudinalSequenceIdentifier", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -253720,17 +255686,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Grant Start Date", - "sms:required": "sms:true", + "sms:displayName": "File Longitudinal Sequence Identifier", + "sms:required": "sms:false", "sms:validationRules": [ - "date" + "int" ] }, { - "@id": "bts:GrantEndDate", + "@id": "bts:FileLongitudinalTimeElapsedUnit", "@type": "rdfs:Class", - "rdfs:comment": "The end date of the grant YYYY-MM-DD format", - "rdfs:label": "GrantEndDate", + "rdfs:comment": "The unit of time associated with Sequential and Total Time Elapsed attributes.", + "rdfs:label": "FileLongitudinalTimeElapsedUnit", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -253739,17 +255705,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Grant End Date", - "sms:required": "sms:true", + "sms:displayName": "File Longitudinal Time Elapsed Unit", + "sms:required": "sms:false", "sms:validationRules": [ - "date" + "str" ] }, { - "@id": "bts:NIHRePORTERLink", + "@id": "bts:FileLongitudinalSequentialTimeElapsed", "@type": "rdfs:Class", - "rdfs:comment": "Link to the search results for this grant number on the NIH Reporter website", - "rdfs:label": "NIHRePORTERLink", + "rdfs:comment": "The time elapsed between collecting the current and previous files in this longitudinal group.", + "rdfs:label": "FileLongitudinalSequentialTimeElapsed", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -253758,17 +255724,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NIH RePORTER Link", - "sms:required": "sms:true", + "sms:displayName": "File Longitudinal Sequential Time Elapsed", + "sms:required": "sms:false", "sms:validationRules": [ - "url" + "num" ] }, { - "@id": "bts:DurationofFunding", + "@id": "bts:FileLongitudinalTotalTimeElapsed", "@type": "rdfs:Class", - "rdfs:comment": "Duration of the funding period, in years", - "rdfs:label": "DurationofFunding", + "rdfs:comment": "The total time elapsed between the first and current files contained this longitudinal group.", + "rdfs:label": "FileLongitudinalTotalTimeElapsed", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -253777,5721 +255743,5283 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Duration of Funding", + "sms:displayName": "File Longitudinal Total Time Elapsed", "sms:required": "sms:false", "sms:validationRules": [ - "int" + "num" ] }, { - "@id": "bts:EmbargoEndDate", + "@id": "bts:Enrollment", "@type": "rdfs:Class", - "rdfs:comment": "Date at which an embargo on related resources had lifted", - "rdfs:label": "EmbargoEndDate", + "rdfs:comment": "TBD", + "rdfs:label": "Enrollment", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileLongitudinalEventType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Embargo End Date", + "sms:displayName": "Enrollment", "sms:required": "sms:false", - "sms:validationRules": [ - "date" - ] + "sms:validationRules": [] }, { - "@id": "bts:GrantSynapseTeam", + "@id": "bts:Baseline", "@type": "rdfs:Class", - "rdfs:comment": "The Synapse team associated with the grant, created by the MC2 Center", - "rdfs:label": "GrantSynapseTeam", + "rdfs:comment": "TBD", + "rdfs:label": "Baseline", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileLongitudinalEventType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Grant Synapse Team", + "sms:displayName": "Baseline", "sms:required": "sms:false", - "sms:validationRules": [ - "url" - ] + "sms:validationRules": [] }, { - "@id": "bts:GrantSynapseProject", + "@id": "bts:Accessorysinus;NOS", "@type": "rdfs:Class", - "rdfs:comment": "The Synapse project associated with the grant, created by the MC2 Center", - "rdfs:label": "GrantSynapseProject", + "rdfs:comment": "TBD", + "rdfs:label": "Accessorysinus;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Grant Synapse Project", + "sms:displayName": "Accessory sinus; NOS", "sms:required": "sms:false", - "sms:validationRules": [ - "url" - ] + "sms:validationRules": [] }, { - "@id": "bts:AlbertEinsteinCollegeofMedicine", + "@id": "bts:Abdominalesophagus", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AlbertEinsteinCollegeofMedicine", + "rdfs:label": "Abdominalesophagus", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Albert Einstein College of Medicine", + "sms:displayName": "Abdominal esophagus", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ArizonaStateUniversity", + "@id": "bts:Ascendingcolon", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ArizonaStateUniversity", + "rdfs:label": "Ascendingcolon", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Arizona State University", + "sms:displayName": "Ascending colon", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:AuburnUniversity", + "@id": "bts:Aorticbodyandotherparaganglia", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AuburnUniversity", + "rdfs:label": "Aorticbodyandotherparaganglia", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Auburn University", + "sms:displayName": "Aortic body and other paraganglia", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BarrowNeurologicalInstitute", + "@id": "bts:Anteriorwallofnasopharynx", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BarrowNeurologicalInstitute", + "rdfs:label": "Anteriorwallofnasopharynx", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Barrow Neurological Institute", + "sms:displayName": "Anterior wall of nasopharynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BaylorCollegeOfMedicine", + "@id": "bts:Anteriorwallofbladder", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BaylorCollegeOfMedicine", + "rdfs:label": "Anteriorwallofbladder", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Baylor College Of Medicine", + "sms:displayName": "Anterior wall of bladder", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BeckmanResearchInstituteofCityofHope", + "@id": "bts:Anteriorsurfaceofepiglottis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BeckmanResearchInstituteofCityofHope", + "rdfs:label": "Anteriorsurfaceofepiglottis", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Beckman Research Institute of City of Hope", + "sms:displayName": "Anterior surface of epiglottis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BethIsraelDeaconessHospital", + "@id": "bts:Anteriormediastinum", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BethIsraelDeaconessHospital", + "rdfs:label": "Anteriormediastinum", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Beth Israel Deaconess Hospital", + "sms:displayName": "Anterior mediastinum", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BostonMedicalCenter", + "@id": "bts:Anteriorfloorofmouth", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BostonMedicalCenter", + "rdfs:label": "Anteriorfloorofmouth", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Boston Medical Center", + "sms:displayName": "Anterior floor of mouth", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BostonUniversity", + "@id": "bts:Anterior2/3oftongue;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - 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"@id": "bts:WCM", + "@id": "bts:Overlappinglesionofpenis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WCM", + "rdfs:label": "Overlappinglesionofpenis", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionAlias" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "WCM", + "sms:displayName": "Overlapping lesion of penis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Wistar", + "@id": "bts:Overlappinglesionofpancreas", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Wistar", + "rdfs:label": "Overlappinglesionofpancreas", "rdfs:subClassOf": [ { - "@id": "bts:GrantInstitutionAlias" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Wistar", + "sms:displayName": "Overlapping lesion of pancreas", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Yale", + "@id": "bts:Overlappinglesionofpalate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - 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"@id": "bts:CSBC", + "@id": "bts:Upperrespiratorytract;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CSBC", + "rdfs:label": "Upperrespiratorytract;NOS", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CSBC", + "sms:displayName": "Upper respiratory tract; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:HTAN", + "@id": "bts:Upperlobe;lung", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "HTAN", + "rdfs:label": "Upperlobe;lung", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "HTAN", + "sms:displayName": "Upper lobe; lung", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ICBP", + "@id": "bts:Upperlimb;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ICBP", + "rdfs:label": "Upperlimb;NOS", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ICBP", + "sms:displayName": "Upper limb; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MetNet", + "@id": "bts:UpperGum", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MetNet", + "rdfs:label": "UpperGum", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MetNet", + "sms:displayName": "Upper Gum", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NCI", + "@id": "bts:Unknownprimarysite", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NCI", + "rdfs:label": "Unknownprimarysite", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NCI", + "sms:displayName": "Unknown primary site", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NCIClinicalandTranslationalExploratory/DevelopmentalStudies", + "@id": "bts:Undescendedtestis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NCIClinicalandTranslationalExploratory/DevelopmentalStudies", + "rdfs:label": "Undescendedtestis", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NCI Clinical and Translational Exploratory/Developmental Studies", + "sms:displayName": "Undescended testis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PDMC", + "@id": "bts:Trigoneofbladder", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PDMC", + "rdfs:label": "Trigoneofbladder", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PDMC", + "sms:displayName": "Trigone of bladder", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PS-ON", + "@id": "bts:Transversecolon", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PS-ON", + "rdfs:label": "Transversecolon", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - 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(eg 'Channel:0:1')", - "rdfs:label": "ChannelIdentifier", + "rdfs:comment": "TBD", + "rdfs:label": "Thyroidgland", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Channel Identifier", - "sms:required": "sms:true", + "sms:displayName": "Thyroid gland", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChannelName", + "@id": "bts:Thorax;NOS", "@type": "rdfs:Class", - "rdfs:comment": "This must match the corresponding field in the OME-XML / TIFF header. (eg 'Blue' or 'CD45' or 'E-cadherin')", - "rdfs:label": "ChannelName", + "rdfs:comment": "TBD", + "rdfs:label": "Thorax;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Channel Name", - "sms:required": "sms:true", + "sms:displayName": "Thorax; NOS", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChannelPassedQC", + "@id": "bts:Thoracicesophagus", "@type": "rdfs:Class", - "rdfs:comment": "Identify stains that did not pass QC but are included in the dataset.", - "rdfs:label": "ChannelPassedQC", + "rdfs:comment": "TBD", + "rdfs:label": "Thoracicesophagus", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Yes" - }, + "sms:displayName": "Thoracic esophagus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Testis;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Testis;NOS", + "rdfs:subClassOf": [ { - "@id": "bts:No-ChannelFailedQC" + "@id": "bts:FileAnatomicSite" } ], - "sms:displayName": "Channel Passed QC", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Testis; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChannelCycleNumber", + "@id": "bts:Temporallobe", "@type": "rdfs:Class", - "rdfs:comment": "The cycle # in which the co-listed reagent(s) was(were) used. Integer >= 1 (up to number of cycles)", - "rdfs:label": "ChannelCycleNumber", + "rdfs:comment": "TBD", + "rdfs:label": "Temporallobe", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Channel Cycle Number", + "sms:displayName": "Temporal lobe", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChannelSub-cycleNumber", + "@id": "bts:Tailofpancreas", "@type": "rdfs:Class", - "rdfs:comment": "Sub cycle number", - "rdfs:label": "ChannelSub-cycleNumber", + "rdfs:comment": "TBD", + "rdfs:label": "Tailofpancreas", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Channel Sub-cycle Number", + "sms:displayName": "Tail of pancreas", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChannelAntibodyRole", + "@id": "bts:Superiorwallofnasopharynx", "@type": "rdfs:Class", - 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"@id": "bts:ChannelResourceID", + "@id": "bts:Centralportionofbreast", "@type": "rdfs:Class", - "rdfs:comment": "Research Resource Identifier (eg β€œRRID: AB_394606”)", - "rdfs:label": "ChannelResourceID", + "rdfs:comment": "TBD", + "rdfs:label": "Centralportionofbreast", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Channel Resource ID", + "sms:displayName": "Central portion of breast", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChannelFluorophore", + "@id": "bts:Femalegenitaltract;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Fluorescent dye label (eg Alexa Fluor 488)", - "rdfs:label": "ChannelFluorophore", + "rdfs:comment": "TBD", + "rdfs:label": "Femalegenitaltract;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Channel Fluorophore", + "sms:displayName": "Female genital tract; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - 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NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:IHC", + "@id": "bts:NanoStringGeoMxAuxiliaryFiles", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IHC", + "rdfs:comment": "Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.", + "rdfs:label": "NanoStringGeoMxAuxiliaryFiles", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "IHC", + "sms:displayName": "NanoString GeoMx Auxiliary Files", "sms:required": "sms:false", + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesId" + }, + { + "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile" + }, + { + "@id": "bts:SynapseIDofGeoMxDSPPKCFile" + }, + { + "@id": "bts:SynapseIDofGeoMxLabWorksheetFile" + }, + { + "@id": "bts:SynapseIDofGeoMxDSPConfigFile" + } + ], "sms:validationRules": [] }, { - "@id": "bts:IMC", + "@id": "bts:NanoStringGeoMxAuxiliaryFilesId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IMC", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxAuxiliaryFilesId", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "IMC", + "sms:displayName": "NanoStringGeoMxAuxiliaryFiles_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile", + "@type": "rdfs:Class", + "rdfs:comment": "Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.", + "rdfs:label": "SynapseIDofGeoMxDSPROISegmentAnnotationFile", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Synapse ID of GeoMx DSP ROI Segment Annotation File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:MERFISH", + "@id": "bts:SynapseIDofGeoMxDSPPKCFile", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MERFISH", + "rdfs:comment": "The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.", + "rdfs:label": "SynapseIDofGeoMxDSPPKCFile", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MERFISH", + "sms:displayName": "Synapse ID of GeoMx DSP PKC File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:MIBI", + "@id": "bts:SynapseIDofGeoMxLabWorksheetFile", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MIBI", + "rdfs:comment": "Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.", + "rdfs:label": "SynapseIDofGeoMxLabWorksheetFile", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MIBI", + "sms:displayName": "Synapse ID of GeoMx Lab Worksheet File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:MIHC", + "@id": "bts:SynapseIDofGeoMxDSPConfigFile", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MIHC", + "rdfs:comment": "Synapse ID of config.ini file generated by the GeoMx DSP workflow.", + "rdfs:label": "SynapseIDofGeoMxDSPConfigFile", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "mIHC", + "sms:displayName": "Synapse ID of GeoMx DSP Config File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:MxIF", + "@id": "bts:NanoStringGeoMxDSPImaging", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MxIF", + "rdfs:comment": "Images acquired by the GeoMx instrument", + "rdfs:label": "NanoStringGeoMxDSPImaging", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MxIF", + "sms:displayName": "NanoString GeoMx DSP Imaging", "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:FileView" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFiles" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:NanoStringGeoMxDSPImagingId" + }, + { + "@id": "bts:Filename" + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1Key" + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel2Key" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + }, + { + "@id": "bts:GeoMxImagingChannelNames" + }, + { + "@id": "bts:GeoMxImagingAOICoordinates" + } + ], "sms:validationRules": [] }, { - "@id": "bts:SABER", + "@id": "bts:NanoStringGeoMxDSPImagingId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SABER", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxDSPImagingId", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "SABER", + "sms:displayName": "NanoStringGeoMxDSPImaging_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel1Key", + "rdfs:subClassOf": [ + { + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPLevel1 Key", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPLevel1.NanoStringGeoMxDSPLevel1_id Value" + ] }, { - "@id": "bts:T-CyCIF", + "@id": "bts:NanoStringGeoMxDSPLevel2Key", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "T-CyCIF", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel2Key", "rdfs:subClassOf": [ { - "@id": "bts:ImageAssayType" + "@id": "bts:Geomx" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "t-CyCIF", + "sms:displayName": "NanoStringGeoMxDSPLevel2 Key", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPLevel2.NanoStringGeoMxDSPLevel2_id Value" + ] }, { - "@id": "bts:ImagingLevel2", + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey", "@type": "rdfs:Class", - "rdfs:comment": "Raw and pre-processed image data", - "rdfs:label": "ImagingLevel2", + "rdfs:comment": "Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxAuxiliaryFilesKey", + "rdfs:subClassOf": [ + { + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxAuxiliaryFiles Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxAuxiliaryFiles.NanoStringGeoMxAuxiliaryFiles_id Value" + ] + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMXROISegmentAnnotationKey", + "rdfs:subClassOf": [ + { + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMXROISegmentAnnotation Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMXROISegmentAnnotation.NanoStringGeoMXROISegmentAnnotation_id Value" + ] + }, + { + "@id": "bts:GeoMxImagingChannelNames", + "@type": "rdfs:Class", + "rdfs:comment": "Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.", + "rdfs:label": "GeoMxImagingChannelNames", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259500,11 +261028,52 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Level 2", + "sms:displayName": "GeoMx Imaging Channel Names", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:GeoMxImagingAOICoordinates", + "@type": "rdfs:Class", + "rdfs:comment": "Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.", + "rdfs:label": "GeoMxImagingAOICoordinates", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "GeoMx Imaging AOI Coordinates", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1", + "@type": "rdfs:Class", + "rdfs:comment": "Raw sequencing files from GeoMX experiments", + "rdfs:label": "NanoStringGeoMxDSPLevel1", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoString GeoMx DSP Level 1", "sms:required": "sms:false", "sms:requiresComponent": [ { "@id": "bts:FileView" + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotation" } ], "sms:requiresDependency": [ @@ -259512,203 +261081,269 @@ "@id": "bts:Component" }, { - "@id": "bts:ImagingLevel2Id" + "@id": "bts:NanoStringGeoMxDSPLevel1Id" }, { - "@id": "bts:Filename" + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" }, { - "@id": "bts:ImagingLevel1Key" + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" }, { - "@id": "bts:ImagingChannelKey" + "@id": "bts:Filename" }, { - "@id": "bts:ImageAssayType" + "@id": "bts:GeoMxDSPAssayType" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1Id", + "@type": "rdfs:Class", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxDSPLevel1Id", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPLevel1_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:GeoMxDSPAssayType", + "@type": "rdfs:Class", + "rdfs:comment": "The assay type which was used for the GeoMx DSP pipeline.", + "rdfs:label": "GeoMxDSPAssayType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:RNAnCounter" }, { - "@id": "bts:ImageProtocolLink" + "@id": "bts:ProteinnCounter" }, { - "@id": "bts:ImagePlatformModel" + "@id": "bts:ProteinNGS" }, { - "@id": "bts:ImagePlatformManufacturer" + "@id": "bts:RNANGS" + } + ], + "sms:displayName": "GeoMx DSP Assay Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotation", + "@type": "rdfs:Class", + "rdfs:comment": "GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates.", + "rdfs:label": "NanoStringGeoMXROISegmentAnnotation", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoString GeoMX ROI Segment Annotation", + "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:Biospecimen" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" }, { - "@id": "bts:ImageSoftware" + "@id": "bts:NanoStringGeoMXROISegmentAnnotationId" }, { - "@id": "bts:ImageObjective" + "@id": "bts:BiospecimenKey" }, { - "@id": "bts:ImageNominalMagnification" + "@id": "bts:GeoMxScanname" }, { - "@id": "bts:ImageLenseAperture" + "@id": "bts:GeoMxROIName" }, { - "@id": "bts:ImageWorkingDistance" + "@id": "bts:GeoMxAOIName" }, { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:GeoMxTags" }, { - "@id": "bts:ImageImmersionType" + "@id": "bts:GeoMxROIXCoordinate" }, { - "@id": "bts:ImagePyramidal" + "@id": "bts:GeoMxROIYCoordinate" }, { - "@id": "bts:ImageZstack" + "@id": "bts:GeoMxAOIXCoordinate" }, { - "@id": "bts:ImageTimeseries" + "@id": "bts:GeoMxAOIYCoordinate" }, { - "@id": "bts:ImageFOVIndex" + "@id": "bts:GeoMxQCstatus" }, { - "@id": "bts:ImageFOVSizeX" + "@id": "bts:GeoMxScanHeight" }, { - "@id": "bts:ImageFOVSizeXUnit" + "@id": "bts:GeoMxScanWidth" }, { - "@id": "bts:ImageFOVSizeY" + "@id": "bts:GeoMxScanOffsetX" }, { - "@id": "bts:ImageFOVSizeYUnit" + "@id": "bts:GeoMxScanOffsetY" }, { - "@id": "bts:ImageFrameAveraging" + "@id": "bts:GeoMxBindingDensity" }, { - "@id": "bts:ImageIdentifier" + "@id": "bts:GeoMxPositivenormfactor" }, { - "@id": "bts:ImageDimensionOrder" + "@id": "bts:GeoMxSurfacearea" }, { - "@id": "bts:ImagePhysicalSizeX" + "@id": "bts:GeoMxNucleicount" }, { - "@id": "bts:ImagePhysicalSizeXUnit" + "@id": "bts:GeoMxTissueStain" }, { - "@id": "bts:ImagePhysicalSizeY" + "@id": "bts:GeoMxSlidename" }, { - "@id": "bts:ImagePhysicalSizeYUnit" + "@id": "bts:NGSRawreads" }, { - "@id": "bts:ImagePhysicalSizeZ" + "@id": "bts:NGSStitchedreads" }, { - "@id": "bts:ImagePhysicalSizeZUnit" + "@id": "bts:NGSAlignedreads" }, { - "@id": "bts:ImagePixelsBigEndian" + "@id": "bts:NGSDeduplicatedreads" }, { - "@id": "bts:ImagePlaneCount" + "@id": "bts:NGSTrimmedreads" }, { - "@id": "bts:ImageChannelSize" + "@id": "bts:NGSSequencingCoverage" }, { - "@id": "bts:ImageNumberofTimepoints" + "@id": "bts:NGSMapQ30" }, { - "@id": "bts:ImageXPixels" + "@id": "bts:GeoMxNegativecountmean" }, { - "@id": "bts:ImageYPixels" + "@id": "bts:GeoMxNoTemplateControlcount" }, { - "@id": "bts:ImageZPixels" + "@id": "bts:GeoMxExcludedOutlierProbes" }, { - "@id": "bts:ImagePixelType" + "@id": "bts:GeoMxLimitofQuantification" } ], "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel2Id", + "@id": "bts:RNAnCounter", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel2Id", + "rdfs:comment": "TBD", + "rdfs:label": "RNAnCounter", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:GeoMxDSPAssayType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel2_id", - "sms:required": "sms:true", + "sms:displayName": "RNA nCounter", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel1Key", + "@id": "bts:ProteinnCounter", "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel1Key", + "rdfs:comment": "TBD", + "rdfs:label": "ProteinnCounter", "rdfs:subClassOf": [ { - "@id": "bts:Imaging" + "@id": "bts:GeoMxDSPAssayType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel1 Key", + "sms:displayName": "Protein nCounter", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel1.ImagingLevel1_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImageObjective", + "@id": "bts:ProteinNGS", "@type": "rdfs:Class", - "rdfs:comment": "Objective lens identifier", - "rdfs:label": "ImageObjective", + "rdfs:comment": "TBD", + "rdfs:label": "ProteinNGS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:GeoMxDSPAssayType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Objective", + "sms:displayName": "Protein NGS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageNominalMagnification", + "@id": "bts:RNANGS", "@type": "rdfs:Class", - "rdfs:comment": "The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units)", - "rdfs:label": "ImageNominalMagnification", + "rdfs:comment": "TBD", + "rdfs:label": "RNANGS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:GeoMxDSPAssayType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Nominal Magnification", + "sms:displayName": "RNA NGS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageLenseAperture", + "@id": "bts:NanoStringGeoMxDSPLevel2", "@type": "rdfs:Class", - "rdfs:comment": "The numerical aperture of the lens. Floating point value > 0.", - "rdfs:label": "ImageLenseAperture", + "rdfs:comment": "Processed count conversion (DCC/RCC) files from GeoMX experiments", + "rdfs:label": "NanoStringGeoMxDSPLevel2", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259717,15 +261352,46 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Lense Aperture", + "sms:displayName": "NanoString GeoMx DSP Level 2", "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:FileView" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFiles" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel2Id" + }, + { + "@id": "bts:Filename" + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1Key" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + }, + { + "@id": "bts:GeoMxDSPAssayType" + } + ], "sms:validationRules": [] }, { - "@id": "bts:ImageWorkingDistance", + "@id": "bts:NanoStringGeoMxDSPLevel2Id", "@type": "rdfs:Class", - "rdfs:comment": "The working distance of the lens, expressed as a floating point number. Floating point > 0.", - "rdfs:label": "ImageWorkingDistance", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxDSPLevel2Id", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259734,15 +261400,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Working Distance", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "NanoStringGeoMxDSPLevel2_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:ImageWorkingDistanceUnit", + "@id": "bts:NanoStringGeoMxDSPLevel3", "@type": "rdfs:Class", - "rdfs:comment": "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageWorkingDistanceUnit", + "rdfs:comment": "Files contain processed count data from the NanoString GeoMx DSP Pipeline.", + "rdfs:label": "NanoStringGeoMxDSPLevel3", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259751,69 +261419,43 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Cm" - }, - { - "@id": "bts:Mm" - }, - { - "@id": "bts:Μm" - }, + "sms:displayName": "NanoString GeoMx DSP Level 3", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:Nm" + "@id": "bts:FileView" }, { - "@id": "bts:Γ…" - } - ], - "sms:displayName": "Image Working Distance Unit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageImmersionType", - "@type": "rdfs:Class", - "rdfs:comment": "Immersion medium", - "rdfs:label": "ImageImmersionType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" + "@id": "bts:NanoStringGeoMxAuxiliaryFiles" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "sms:requiresDependency": [ { - "@id": "bts:Air" + "@id": "bts:Component" }, { - "@id": "bts:Oil" + "@id": "bts:NanoStringGeoMxDSPLevel3Id" }, { - "@id": "bts:Water" + "@id": "bts:Filename" }, { - "@id": "bts:Other" + "@id": "bts:NanoStringGeoMxDSPLevel1Key" }, { - "@id": "bts:Multi" + "@id": "bts:NanoStringGeoMxDSPLevel2Key" }, { - "@id": "bts:Glycerol" + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" } ], - "sms:displayName": "Image Immersion Type", - "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePyramidal", + "@id": "bts:NanoStringGeoMxDSPLevel3Id", "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain pyramid of images", - "rdfs:label": "ImagePyramidal", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxDSPLevel3Id", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259822,23 +261464,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:True" - }, - { - "@id": "bts:False" - } - ], - "sms:displayName": "Image Pyramidal", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "NanoStringGeoMxDSPLevel3_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:ImageZstack", + "@id": "bts:NanoStringGeoMXROISegmentAnnotationId", "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a Z-stack of images", - "rdfs:label": "ImageZstack", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMXROISegmentAnnotationId", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259847,15 +261483,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Z stack", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "NanoStringGeoMXROISegmentAnnotation_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:ImageTimeseries", + "@id": "bts:GeoMxScanname", "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a time-series of images", - "rdfs:label": "ImageTimeseries", + "rdfs:comment": "GeoMx Scan name (as appears in Segment Summary)", + "rdfs:label": "GeoMxScanname", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259864,15 +261502,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Timeseries", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "GeoMx Scan name", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:ImageFOVIndex", + "@id": "bts:GeoMxROIName", "@type": "rdfs:Class", - "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", - "rdfs:label": "ImageFOVIndex", + "rdfs:comment": "Name of Region of Interest corresponding to file. Multiple names should be comma-separated", + "rdfs:label": "GeoMxROIName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259881,15 +261521,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Index", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "GeoMx ROI Name", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:ImageFOVSizeX", + "@id": "bts:GeoMxAOIName", "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension. Floating point", - "rdfs:label": "ImageFOVSizeX", + "rdfs:comment": "Name of Area of Illumination corresponding to file. Multiple names should be comma-separated", + "rdfs:label": "GeoMxAOIName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259898,15 +261540,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size X", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "GeoMx AOI Name", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:ImageFOVSizeXUnit", + "@id": "bts:GeoMxTags", "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageFOVSizeXUnit", + "rdfs:comment": "TBD", + "rdfs:label": "GeoMxTags", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259915,15 +261559,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size X Unit", + "sms:displayName": "GeoMx Tags", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageFOVSizeY", + "@id": "bts:GeoMxROIXCoordinate", "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension. Floating point value", - "rdfs:label": "ImageFOVSizeY", + "rdfs:comment": "Region of Interest X location within the image", + "rdfs:label": "GeoMxROIXCoordinate", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259932,15 +261576,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size Y", + "sms:displayName": "GeoMx ROI X Coordinate", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImageFOVSizeYUnit", + "@id": "bts:GeoMxROIYCoordinate", "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageFOVSizeYUnit", + "rdfs:comment": "Region of Interest Y location within the image", + "rdfs:label": "GeoMxROIYCoordinate", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259949,15 +261595,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size Y Unit", + "sms:displayName": "GeoMx ROI Y Coordinate", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImageFrameAveraging", + "@id": "bts:GeoMxAOIXCoordinate", "@type": "rdfs:Class", - "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", - "rdfs:label": "ImageFrameAveraging", + "rdfs:comment": "Area of Illumination X location within the image", + "rdfs:label": "GeoMxAOIXCoordinate", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259966,15 +261614,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Frame Averaging", + "sms:displayName": "GeoMx AOI X Coordinate", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImageIdentifier", + "@id": "bts:GeoMxAOIYCoordinate", "@type": "rdfs:Class", - "rdfs:comment": "Unique internal image identifier. eg \"Image:0\". (To be extracted from OME-XML)", - "rdfs:label": "ImageIdentifier", + "rdfs:comment": "Area of Illumination Y location within the image", + "rdfs:label": "GeoMxAOIYCoordinate", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -259983,15 +261633,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Identifier", + "sms:displayName": "GeoMx AOI Y Coordinate", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImageDimensionOrder", + "@id": "bts:GeoMxQCstatus", "@type": "rdfs:Class", - "rdfs:comment": "The order in which the individual planes of data are interleaved.", - "rdfs:label": "ImageDimensionOrder", + "rdfs:comment": "ROI quality control flag as reported by the application", + "rdfs:label": "GeoMxQCstatus", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260000,15 +261652,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Dimension Order", + "sms:displayName": "GeoMx QC status", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:ImagePhysicalSizeX", + "@id": "bts:GeoMxScanHeight", "@type": "rdfs:Class", - "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeX", + "rdfs:comment": "Height of the scan for GeoMx Analysis", + "rdfs:label": "GeoMxScanHeight", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260017,15 +261671,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size X", + "sms:displayName": "GeoMx Scan Height", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagePhysicalSizeXUnit", + "@id": "bts:GeoMxScanWidth", "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeXUnit", + "rdfs:comment": "Width of the scan for GeoMx Analysis", + "rdfs:label": "GeoMxScanWidth", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260034,15 +261690,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size X Unit", + "sms:displayName": "GeoMx Scan Width", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagePhysicalSizeY", + "@id": "bts:GeoMxScanOffsetX", "@type": "rdfs:Class", - "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeY", + "rdfs:comment": "Offset X of the scan for GeoMx Analysis", + "rdfs:label": "GeoMxScanOffsetX", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260051,15 +261709,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Y", + "sms:displayName": "GeoMx Scan Offset X", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagePhysicalSizeYUnit", + "@id": "bts:GeoMxScanOffsetY", "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeYUnit", + "rdfs:comment": "Offset Y of the scan for GeoMx Analysis", + "rdfs:label": "GeoMxScanOffsetY", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260068,15 +261728,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Y Unit", + "sms:displayName": "GeoMx Scan Offset Y", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagePhysicalSizeZ", + "@id": "bts:GeoMxBindingDensity", "@type": "rdfs:Class", - "rdfs:comment": "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeZ", + "rdfs:comment": "The binding density as reported by the application", + "rdfs:label": "GeoMxBindingDensity", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260085,15 +261747,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Z", + "sms:displayName": "GeoMx Binding Density", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagePhysicalSizeZUnit", + "@id": "bts:GeoMxPositivenormfactor", "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeZUnit", + "rdfs:comment": "The Positive Control Normalization factor calculated using pos-hyb controls", + "rdfs:label": "GeoMxPositivenormfactor", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260102,15 +261766,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Z Unit", + "sms:displayName": "GeoMx Positive norm factor", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagePixelsBigEndian", + "@id": "bts:GeoMxSurfacearea", "@type": "rdfs:Class", - "rdfs:comment": "Boolean (True/False)", - "rdfs:label": "ImagePixelsBigEndian", + "rdfs:comment": "Surface area of the ROI in square microns (Β΅m2)", + "rdfs:label": "GeoMxSurfacearea", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260119,23 +261785,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:True" - }, - { - "@id": "bts:False" - } - ], - "sms:displayName": "Image Pixels BigEndian", + "sms:displayName": "GeoMx Surface area", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagePlaneCount", + "@id": "bts:GeoMxNucleicount", "@type": "rdfs:Class", - "rdfs:comment": "Number of Z-planes (not to be confused with downsampled \"pyramid\"). Integer >=1", - "rdfs:label": "ImagePlaneCount", + "rdfs:comment": "Number of nuclei detected in the segment (if applicable)", + "rdfs:label": "GeoMxNucleicount", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260144,15 +261804,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Plane Count", + "sms:displayName": "GeoMx Nuclei count", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImageChannelSize", + "@id": "bts:GeoMxTissueStain", "@type": "rdfs:Class", - "rdfs:comment": "Number of channels. Integer >= 1", - "rdfs:label": "ImageChannelSize", + "rdfs:comment": "TBD", + "rdfs:label": "GeoMxTissueStain", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260161,15 +261823,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Channel Size", + "sms:displayName": "GeoMx Tissue Stain", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageNumberofTimepoints", + "@id": "bts:GeoMxSlidename", "@type": "rdfs:Class", - "rdfs:comment": "Number of time points. Integer >= 1", - "rdfs:label": "ImageNumberofTimepoints", + "rdfs:comment": "Similar to a Run ID, the slide name indicates the slide a given ROI is linked to (as reported in Segment Summary).", + "rdfs:label": "GeoMxSlidename", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260178,311 +261840,216 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Number of Timepoints", + "sms:displayName": "GeoMx Slide name", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:ImageXPixels", - "@type": "rdfs:Class", - "rdfs:comment": "Size of image: X dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageXPixels", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image X Pixels", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageYPixels", - "@type": "rdfs:Class", - "rdfs:comment": "Size of image: Y dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageYPixels", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Y Pixels", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageZPixels", - "@type": "rdfs:Class", - "rdfs:comment": "Size of image: Z dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageZPixels", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Z Pixels", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePixelType", - "@type": "rdfs:Class", - "rdfs:comment": "Data type for each pixel value. E.g. \"uint16\"", - "rdfs:label": "ImagePixelType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Pixel Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Cm", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Cm", - "rdfs:subClassOf": [ - { - "@id": "bts:ImageWorkingDistanceUnit" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "cm", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Mm", + "@id": "bts:NGSRawreads", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Mm", + "rdfs:label": "NGSRawreads", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "mm", + "sms:displayName": "NGS Raw reads", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Μm", + "@id": "bts:NGSStitchedreads", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Μm", + "rdfs:label": "NGSStitchedreads", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Β΅m", + "sms:displayName": "NGS Stitched reads", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Nm", + "@id": "bts:NGSAlignedreads", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Nm", + "rdfs:label": "NGSAlignedreads", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "nm", + "sms:displayName": "NGS Aligned reads", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Γ…", + "@id": "bts:NGSDeduplicatedreads", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Γ…", + "rdfs:label": "NGSDeduplicatedreads", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Γ…", + "sms:displayName": "NGS Deduplicated reads", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Air", + "@id": "bts:NGSTrimmedreads", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Air", + "rdfs:label": "NGSTrimmedreads", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Air", + "sms:displayName": "NGS Trimmed reads", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Oil", + "@id": "bts:NGSSequencingCoverage", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Oil", + "rdfs:comment": "Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length)", + "rdfs:label": "NGSSequencingCoverage", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Oil", + "sms:displayName": "NGS Sequencing Coverage", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:Water", + "@id": "bts:NGSMapQ30", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Water", + "rdfs:comment": "Number of reads with Quality >= 30.", + "rdfs:label": "NGSMapQ30", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Water", + "sms:displayName": "NGS MapQ30", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:Multi", + "@id": "bts:GeoMxNegativecountmean", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Multi", + "rdfs:comment": "The geometric mean of the unique negative probes in a GeoMx panel that do not target mRNA and establish the background count level per segment", + "rdfs:label": "GeoMxNegativecountmean", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Multi", + "sms:displayName": "GeoMx Negative count mean", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:Glycerol", + "@id": "bts:GeoMxNoTemplateControlcount", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Glycerol", + "rdfs:comment": "The number of reads detected by the GeoMx probe panel in the control associated with this ROI.", + "rdfs:label": "GeoMxNoTemplateControlcount", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Glycerol", + "sms:displayName": "GeoMx No Template Control count", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:True", + "@id": "bts:GeoMxExcludedOutlierProbes", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "True", + "rdfs:comment": "The list of probes excluded from analysis.", + "rdfs:label": "GeoMxExcludedOutlierProbes", "rdfs:subClassOf": [ { - "@id": "bts:ImagePyramidal" - }, - { - "@id": "bts:ImagePixelsBigEndian" - }, - { - "@id": "bts:ToolPackageDependenciesPresent" - }, - { - "@id": "bts:VisiumImageRe-orientation" - }, - { - "@id": "bts:VisiumAppliedHardTrimming" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "True", + "sms:displayName": "GeoMx Excluded Outlier Probes", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:False", + "@id": "bts:GeoMxLimitofQuantification", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "False", + "rdfs:comment": "The calculated limit of quantification associated with the segment.", + "rdfs:label": "GeoMxLimitofQuantification", "rdfs:subClassOf": [ { - "@id": "bts:ImagePyramidal" - }, - { - "@id": "bts:ImagePixelsBigEndian" - }, - { - "@id": "bts:ToolPackageDependenciesPresent" - }, - { - "@id": "bts:VisiumImageRe-orientation" - }, - { - "@id": "bts:VisiumAppliedHardTrimming" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "False", + "sms:displayName": "GeoMx Limit of Quantification", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagingLevel3Image", + "@id": "bts:GeoMxInSituNegativemedian", "@type": "rdfs:Class", - "rdfs:comment": "Quality controlled or co-registered image data", - "rdfs:label": "ImagingLevel3Image", + "rdfs:comment": "Is the median of all negative control probes for a given segment. A measure of signal to background for each segment.", + "rdfs:label": "GeoMxInSituNegativemedian", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260491,91 +262058,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Level 3 Image", + "sms:displayName": "GeoMx In Situ Negative median", "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:FileView" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:ImagingLevel3ImageId" - }, - { - "@id": "bts:Filename" - }, - { - "@id": "bts:ImagingChannelKey" - }, - { - "@id": "bts:ImagingLevel2Key" - }, - { - "@id": "bts:ImageAssayType" - }, - { - "@id": "bts:ImageProtocolLink" - }, - { - "@id": "bts:ImagePlatformModel" - }, - { - "@id": "bts:ImagePlatformManufacturer" - }, - { - "@id": "bts:ImageSoftware" - }, - { - "@id": "bts:ImageObjective" - }, - { - "@id": "bts:ImageNominalMagnification" - }, - { - "@id": "bts:ImageLenseAperture" - }, - { - "@id": "bts:ImageWorkingDistance" - }, - { - "@id": "bts:ImageImmersionType" - }, - { - "@id": "bts:ImagePyramidal" - }, - { - "@id": "bts:ImageZstack" - }, - { - "@id": "bts:ImageTimeseries" - }, - { - "@id": "bts:ImageFOVIndex" - }, - { - "@id": "bts:ImageFOVSizeX" - }, - { - "@id": "bts:ImageFOVSizeY" - }, - { - "@id": "bts:ImageFOVSizeYUnit" - }, - { - "@id": "bts:ImageFrameAveraging" - } - ], - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagingLevel3ImageId", + "@id": "bts:GeoMxBiologicalprobemedian", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel3ImageId", + "rdfs:comment": "Is the median count from all probes except the negative control probes. A measure of signal to background for each segment", + "rdfs:label": "GeoMxBiologicalprobemedian", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260584,34 +262077,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel3Image_id", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagingLevel2Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel2Key", - "rdfs:subClassOf": [ - { - "@id": "bts:Imaging" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ImagingLevel2 Key", + "sms:displayName": "GeoMx Biological probe median", "sms:required": "sms:false", "sms:validationRules": [ - "matchAtLeastOne ImagingLevel2.ImagingLevel2_id Value" + "num" ] }, { - "@id": "bts:ImagingLevel3Segments", + "@id": "bts:GeoMxSequencingSaturation", "@type": "rdfs:Class", - "rdfs:comment": "Image segmentation mask information", - "rdfs:label": "ImagingLevel3Segments", + "rdfs:comment": "The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. More specifically, this is the fraction of confidently mapped, valid spot-barcode, valid UMI reads that had a non-unique (spot-barcode, UMI, gene).", + "rdfs:label": "GeoMxSequencingSaturation", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260620,55 +262096,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Level 3 Segments", + "sms:displayName": "GeoMx Sequencing Saturation", "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:FileView" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:ImagingLevel3SegmentsId" - }, - { - "@id": "bts:Filename" - }, - { - "@id": "bts:ImagingLevel2Key" - }, - { - "@id": "bts:ImagingLevel3ImageKey" - }, - { - "@id": "bts:ImageSegmentationDataType" - }, - { - "@id": "bts:ImageParameterfile" - }, - { - "@id": "bts:SoftwareandVersion" - }, - { - "@id": "bts:ImageObjectClass" - }, - { - "@id": "bts:ImageObjectClassDescription" - }, - { - "@id": "bts:ImageNumberofObjects" - } - ], - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ImagingLevel3SegmentsId", + "@id": "bts:GrantName", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel3SegmentsId", + "rdfs:comment": "Name of the grant", + "rdfs:label": "GrantName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260677,34 +262115,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel3Segments_id", + "sms:displayName": "Grant Name", "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel3ImageKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel3Image_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel3ImageKey", - "rdfs:subClassOf": [ - { - "@id": "bts:Imaging" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ImagingLevel3Image Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel3Image.ImagingLevel3Image_id Value" - ] - }, - { - "@id": "bts:ImageSegmentationDataType", + "@id": "bts:GrantNumber", "@type": "rdfs:Class", - "rdfs:comment": "Specifies how the segmentation is stored", - "rdfs:label": "ImageSegmentationDataType", + "rdfs:comment": "Number of the grant (i.e. \"CA------\" format)", + "rdfs:label": "GrantNumber", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260713,34 +262132,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Mask" - }, - { - "@id": "bts:Outline" - }, - { - "@id": "bts:Polygon" - }, - { - "@id": "bts:ProbabilityMap" - }, - { - "@id": "bts:Point" - } - ], - "sms:displayName": "Image Segmentation Data Type", + "sms:displayName": "Grant Number", "sms:required": "sms:true", "sms:validationRules": [ - "str" + "regex search ^CA\\d{6}$" ] }, { - "@id": "bts:ImageParameterfile", + "@id": "bts:GrantAbstract", "@type": "rdfs:Class", - "rdfs:comment": "Path in Synapse to a text file listing algorithm version numbers and relevant parameters needed to reproduce the analysis", - "rdfs:label": "ImageParameterfile", + "rdfs:comment": "Abstract for the grant", + "rdfs:label": "GrantAbstract", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260749,34 +262151,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Parameter file", - "sms:required": "sms:false", + "sms:displayName": "Grant Abstract", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:SoftwareandVersion", - "@type": "rdfs:Class", - "rdfs:comment": "Name of software used to generate the information contained in the file. String", - "rdfs:label": "SoftwareandVersion", - "rdfs:subClassOf": [ - { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Software and Version", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:ImageObjectClass", + "@id": "bts:GrantType", "@type": "rdfs:Class", - "rdfs:comment": "Defines the structure that the mask delineates", - "rdfs:label": "ImageObjectClass", + "rdfs:comment": "Type of grant", + "rdfs:label": "GrantType", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -260787,243 +262170,154 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Nucleus" + "@id": "bts:R01" }, { - "@id": "bts:Cytoplasm" + "@id": "bts:R21" }, { - "@id": "bts:PlasmaMembrane" + "@id": "bts:R37" }, { - "@id": "bts:WholeCell" + "@id": "bts:U01" }, { - "@id": "bts:Spot" + "@id": "bts:U24" }, { - "@id": "bts:Other" - } - ], - "sms:displayName": "Image Object Class", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:ImageObjectClassDescription", - "@type": "rdfs:Class", - "rdfs:comment": "If Imaging Object Class is \"Other\", please use this field to provide a text description of the imaging object class associated with the segmentation data", - "rdfs:label": "ImageObjectClassDescription", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Object Class Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:ImageNumberofObjects", - "@type": "rdfs:Class", - "rdfs:comment": "The number of objects (eg cells) described", - "rdfs:label": "ImageNumberofObjects", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Number of Objects", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:Mask", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Mask", - "rdfs:subClassOf": [ - { - "@id": "bts:ImageSegmentationDataType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Mask", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Outline", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Outline", - "rdfs:subClassOf": [ - { - "@id": "bts:ImageSegmentationDataType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Outline", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Polygon", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Polygon", - "rdfs:subClassOf": [ - { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:U54" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Polygon", - "sms:required": "sms:false", + "sms:displayName": "Grant Type", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:ProbabilityMap", + "@id": "bts:R01", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ProbabilityMap", + "rdfs:label": "R01", "rdfs:subClassOf": [ { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:GrantType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Probability Map", + "sms:displayName": "R01", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Point", + "@id": "bts:R21", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Point", + "rdfs:label": "R21", "rdfs:subClassOf": [ { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:GrantType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Point", + "sms:displayName": "R21", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Nucleus", + "@id": "bts:R37", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Nucleus", + "rdfs:label": "R37", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:GrantType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Nucleus", + "sms:displayName": "R37", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cytoplasm", + "@id": "bts:U01", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cytoplasm", + "rdfs:label": "U01", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:GrantType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cytoplasm", + "sms:displayName": "U01", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PlasmaMembrane", + "@id": "bts:U24", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PlasmaMembrane", + "rdfs:label": "U24", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:GrantType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Plasma Membrane", + "sms:displayName": "U24", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeCell", + "@id": "bts:U54", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeCell", + "rdfs:label": "U54", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:GrantType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Cell", + "sms:displayName": "U54", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Spot", + "@id": "bts:GrantViewId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Spot", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "GrantViewId", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Spot", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "GrantView_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:ImagingLevel4", + "@id": "bts:GrantThemeName", "@type": "rdfs:Class", - "rdfs:comment": "Derived imaging data or object by feature array", - "rdfs:label": "ImagingLevel4", + "rdfs:comment": "Theme(s) associated with the grant. 1...*", + "rdfs:label": "GrantThemeName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -261032,230 +262326,73 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Level 4", - "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:FileView" - } - ], - "sms:requiresDependency": [ + "schema:rangeIncludes": [ { - "@id": "bts:Component" + "@id": "bts:ComputationalModelDevelopment" }, { - "@id": "bts:ImagingLevel4Id" + "@id": "bts:ComputationalResource" }, { - "@id": "bts:Filename" + "@id": "bts:DrugResistance/Sensitivity" }, { - "@id": "bts:ImagingLevel2Key" + "@id": "bts:Epigenetics" }, { - "@id": "bts:ImagingLevel3ImageKey" + "@id": "bts:Evolution" }, { - "@id": "bts:ImagingLevel3SegmentsKey" + "@id": "bts:ExperimentalModelDevelopment" }, { - "@id": "bts:ImageParameterfile" + "@id": "bts:Heterogeneity" }, { - "@id": "bts:ImageSoftware" + "@id": "bts:Immunotherapy" }, { - "@id": "bts:ImageNumberofObjects" + "@id": "bts:Mechano-genetics" }, { - "@id": "bts:ImageNumberofFeatures" + "@id": "bts:Mechano-resistance" }, { - "@id": "bts:ImageObjectClass" + "@id": "bts:Metabolism" }, { - "@id": "bts:ImageSummaryStatistic" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:ImagingLevel4Id", - "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel4Id", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ImagingLevel4_id", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagingLevel3SegmentsKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel3Segments_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel3SegmentsKey", - "rdfs:subClassOf": [ - { - "@id": "bts:Imaging" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ImagingLevel3Segments Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel3Segments.ImagingLevel3Segments_id Value" - ] - }, - { - "@id": "bts:ImageNumberofFeatures", - "@type": "rdfs:Class", - "rdfs:comment": "The number of features (eg channels) described", - "rdfs:label": "ImageNumberofFeatures", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Number of Features", - "sms:required": "sms:true", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:ImageSummaryStatistic", - "@type": "rdfs:Class", - "rdfs:comment": "Function used to summarize object/feature intensity", - "rdfs:label": "ImageSummaryStatistic", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Mean" + "@id": "bts:Metastasis" }, { - "@id": "bts:Median" + "@id": "bts:Method/AssayDevelopment" }, { - "@id": "bts:NotSpecified" - } - ], - "sms:displayName": "Image Summary Statistic", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:Mean", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Mean", - "rdfs:subClassOf": [ + "@id": "bts:Microenvironment" + }, { - "@id": "bts:ImageSummaryStatistic" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Mean", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Median", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Median", - "rdfs:subClassOf": [ + "@id": "bts:OncogenicStress" + }, { - "@id": "bts:ImageSummaryStatistic" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Median", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NotSpecified", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NotSpecified", - "rdfs:subClassOf": [ + "@id": "bts:PlatformDevelopment" + }, { - "@id": "bts:ImageSummaryStatistic" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Not Specified", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IndividualId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "IndividualId", - "rdfs:subClassOf": [ + "@id": "bts:TumorProgression" + }, { - "@id": "bts:Thing" + "@id": "bts:Tumor-Immune" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Individual_id", + "sms:displayName": "Grant Theme Name", "sms:required": "sms:true", "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:IndividualdbGaPSubjectId", - "@type": "rdfs:Class", - "rdfs:comment": "The identifer assigned to the participant by dbGap", - "rdfs:label": "IndividualdbGaPSubjectId", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Individual dbGaP Subject Id", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" + "list like" ] }, { - "@id": "bts:IndividualSex", + "@id": "bts:GrantInstitutionName", "@type": "rdfs:Class", - "rdfs:comment": "Biological sex associated with the specimen donor", - "rdfs:label": "IndividualSex", + "rdfs:comment": "The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*", + "rdfs:label": "GrantInstitutionName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -261266,2678 +262403,6982 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Declinetoanswer" + "@id": "bts:AlbertEinsteinCollegeofMedicine" }, { - "@id": "bts:Don'tknow" + "@id": "bts:ArizonaStateUniversity" }, { - "@id": "bts:Female" + "@id": "bts:AuburnUniversity" }, { - "@id": "bts:Intersex" + "@id": "bts:BarrowNeurologicalInstitute" }, { - "@id": "bts:Male" + "@id": "bts:BaylorCollegeOfMedicine" }, { - "@id": "bts:Noneofthesedescribeme" + "@id": "bts:BeckmanResearchInstituteofCityofHope" }, { - "@id": "bts:Prefernottoanswer" + "@id": "bts:BethIsraelDeaconessHospital" }, { - "@id": "bts:Unknown" + "@id": "bts:BostonMedicalCenter" }, { - "@id": "bts:X" - } - ], - "sms:displayName": "Individual Sex", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:IndividualGender", - "@type": "rdfs:Class", - "rdfs:comment": "Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.", - "rdfs:label": "IndividualGender", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Female" + "@id": "bts:BostonUniversity" }, { - "@id": "bts:Male" + "@id": "bts:BrighamandWomensHospital" }, { - "@id": "bts:Intersex" + "@id": "bts:CaliforniaInstituteofTechnology" }, { - "@id": "bts:Unknown" + "@id": "bts:ChildrensHospitalofPhiladelphia" }, { - "@id": "bts:Unspecified" + "@id": "bts:CityOfHope" }, { - "@id": "bts:NotReported" - } - ], - "sms:displayName": "Individual Gender", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:IndividualAgeatDiagnosis", - "@type": "rdfs:Class", - "rdfs:comment": "Age at the time the individual was diagnosed, expressed in years.", - "rdfs:label": "IndividualAgeatDiagnosis", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Individual Age at Diagnosis", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:IndividualDiseaseType", - "@type": "rdfs:Class", - "rdfs:comment": "The type of tumor associated with the specimen. Multiple values permitted, comma separated.", - "rdfs:label": "IndividualDiseaseType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:AcinarCellNeoplasms" + "@id": "bts:ClemsonUniversity" }, { - "@id": "bts:AdenomasandAdenocarcinomas" + "@id": "bts:ClevelandClinic" }, { - "@id": "bts:AdnexalandSkinAppendageNeoplasms" + "@id": "bts:ColdSpringHarborLaboratory" }, { - "@id": "bts:BasalCellNeoplasms" + "@id": "bts:ColumbiaUniversity" }, { - "@id": "bts:BloodVesselTumors" + "@id": "bts:CornellUniversity" }, { - "@id": "bts:ComplexMixedandStromalNeoplasms" + "@id": "bts:Dana-FarberCancerInstitute" }, { - "@id": "bts:Cystic;MucinousandSerousNeoplasms" + "@id": "bts:DartmouthCollege" }, { - "@id": "bts:DuctalandLobularNeoplasms" + "@id": "bts:DukeUniversity" }, { - "@id": "bts:EpithelialNeoplasms;NOS" + "@id": "bts:EmoryUniversity" }, { - "@id": "bts:FibroepithelialNeoplasms" + "@id": "bts:GeorgiaInstituteofTechnology" }, { - 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Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingChannelKey", + "rdfs:subClassOf": [ { - "@id": "bts:AngiomatoidFibrousHistiocytoma" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingChannel Key", + "sms:required": "sms:true", + "sms:validationRules": [ + "matchAtLeastOne ImagingChannel.ImagingChannel_id Value" + ] + }, + { + "@id": "bts:CODEX", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CODEX", + "rdfs:subClassOf": [ { - "@id": "bts:MicropapillaryCarcinoma;NOS" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CODEX", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CyCIF", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CyCIF", + "rdfs:subClassOf": [ { - "@id": "bts:InfiltratingLobularCarcinoma;NOS" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CyCIF", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ExSeq", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ExSeq", + "rdfs:subClassOf": [ { - 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{ - "@id": "bts:Glioblastoma;IDHWildtype" - }, - { - "@id": "bts:Neoplasm;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" - }, - { - "@id": "bts:TherapyRelatedMyeloidNeoplasm" - }, - { - "@id": "bts:AcuteMyeloidLeukemia;NOS" - }, - { - "@id": "bts:MalignantTumor;SpindleCellType;CNSSarcoma;CNSSarcoma;NOSOrNEC" - }, - { - "@id": "bts:LeydigCellTumor;Benign" - }, - { - "@id": "bts:MyelodysplasticSyndromeWithSingleLineageDysplasia" - }, - { - "@id": "bts:Germinoma;CNSGermCellTumors;CNSGerminoma" - }, - { - "@id": "bts:GlialTumor" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "IMC", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MERFISH", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MERFISH", + "rdfs:subClassOf": [ { - "@id": "bts:SynovialSarcoma;SpindleCell" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "MERFISH", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MIBI", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MIBI", + "rdfs:subClassOf": [ { - 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"@id": "bts:Pinealoma" + "@id": "bts:ImageNominalMagnification" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;INI1/SMARCB1-Altered;WHOGrade4" + "@id": "bts:ImageLenseAperture" }, { - "@id": "bts:MetastaticSignetRingCellCarcinoma" + "@id": "bts:ImageWorkingDistance" }, { - "@id": "bts:Astrocytoma" + "@id": "bts:ImageWorkingDistanceUnit" }, { - "@id": "bts:DesmoplasticInfantileAstrocytoma" + "@id": "bts:ImageImmersionType" }, { - "@id": "bts:MalignantSarcomaWithDICER1Mutation;FavorPrimaryIntracranialSarcoma;DICER1Mutant" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHypodiploidy" + "@id": "bts:ImageZstack" }, { - "@id": "bts:ColonAdenocarcinoma" + "@id": "bts:ImageTimeseries" }, { - "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:ImageFOVIndex" }, { - "@id": "bts:ProliferativeDermalLesionInCongenitalNevus" + "@id": "bts:ImageFOVSizeX" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;WNT-Activated" + "@id": "bts:ImageFOVSizeXUnit" }, { - 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"@id": "bts:Meningioma;NOS" + "@id": "bts:ImagePlaneCount" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:ImageChannelSize" }, { - "@id": "bts:ChoriocarcinomaCombinedWithOtherGermCellElements" + "@id": "bts:ImageNumberofTimepoints" }, { - "@id": "bts:BrainTumor;LowGradeGlioma" + "@id": "bts:ImageXPixels" }, { - "@id": "bts:Ganglioglioma;NOS;DiffuseAstrocytoma;MYB-OrMYBL1-Altered;Low-GradeGlioma" + "@id": "bts:ImageYPixels" }, { - "@id": "bts:EmbryonalTumorWithMultilayeredRosettesC19MC-Altered" + "@id": "bts:ImageZPixels" }, { - "@id": "bts:Neoplasm;Malignant;UncertainWhetherPrimaryOrMetastatic" - }, + "@id": "bts:ImagePixelType" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel2Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel2Id", + "rdfs:subClassOf": [ { - "@id": "bts:DesmoplasticSmallRoundCellTumor" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel2_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:EmbryonalRhabdomyosarcoma" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel1.ImagingLevel1_id Value" + ] + }, + { + "@id": "bts:ImageObjective", + "@type": "rdfs:Class", + "rdfs:comment": "Objective lens identifier", + "rdfs:label": "ImageObjective", + "rdfs:subClassOf": [ { - "@id": "bts:LangerhansCellHistiocytosis" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Objective", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageNominalMagnification", + "@type": "rdfs:Class", + "rdfs:comment": "The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units)", + "rdfs:label": "ImageNominalMagnification", + "rdfs:subClassOf": [ { - "@id": "bts:GlialNeoplasmShowingHigh-GradeFeatures" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Nominal Magnification", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageLenseAperture", + "@type": "rdfs:Class", + "rdfs:comment": "The numerical aperture of the lens. Floating point value > 0.", + "rdfs:label": "ImageLenseAperture", + "rdfs:subClassOf": [ { - "@id": "bts:Oligodendroglioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Lense Aperture", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageWorkingDistance", + "@type": "rdfs:Class", + "rdfs:comment": "The working distance of the lens, expressed as a floating point number. Floating point > 0.", + "rdfs:label": "ImageWorkingDistance", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantMelanoma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Working Distance", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageWorkingDistanceUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageWorkingDistanceUnit", + "rdfs:subClassOf": [ { - "@id": "bts:MyxopapillaryEpendymoma;Ependymoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;NOSOrNEC" + "@id": "bts:Cm" }, { - "@id": "bts:Neoplasm;Malignant;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" + "@id": "bts:Mm" }, { - "@id": "bts:Adenocarcinoma" + "@id": "bts:Μm" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(9;22)(Q34;Q11.2);BCR-ABL1" + "@id": "bts:Nm" }, { - "@id": "bts:Hemangioendothelioma;Malignant" - }, + "@id": "bts:Γ…" + } + ], + "sms:displayName": "Image Working Distance Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageImmersionType", + "@type": "rdfs:Class", + "rdfs:comment": "Immersion medium", + "rdfs:label": "ImageImmersionType", + "rdfs:subClassOf": [ { - "@id": "bts:ChoroidPlexusNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Craniopharyngioma;Adamantinomatous;AdamantinomatousCraniopharyngioma" + "@id": "bts:Air" }, { - "@id": "bts:Pinealoblastoma" + "@id": "bts:Oil" }, { - "@id": "bts:LargeCellMedulloblastoma;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" + "@id": "bts:Water" }, { - "@id": "bts:SpindleCellSarcoma" + "@id": "bts:Other" }, { - "@id": "bts:Gliosarcoma" + "@id": "bts:Multi" }, { - "@id": "bts:CentralPrimitiveNeuroectodermalTumor" - }, + "@id": "bts:Glycerol" + } + ], + "sms:displayName": "Image Immersion Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePyramidal", + "@type": "rdfs:Class", + "rdfs:comment": "Does data file contain pyramid of images", + "rdfs:label": "ImagePyramidal", + "rdfs:subClassOf": [ { - "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade3" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Astrocytoma;Benign" + "@id": "bts:True" }, { - "@id": "bts:PleomorphicRhabdomyosarcoma;AdultType" - }, + "@id": "bts:False" + } + ], + "sms:displayName": "Image Pyramidal", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageZstack", + "@type": "rdfs:Class", + "rdfs:comment": "Does data file contain a Z-stack of images", + "rdfs:label": "ImageZstack", + "rdfs:subClassOf": [ { - "@id": "bts:MyeloidSarcoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Z stack", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageTimeseries", + "@type": "rdfs:Class", + "rdfs:comment": "Does data file contain a time-series of images", + "rdfs:label": "ImageTimeseries", + "rdfs:subClassOf": [ { - "@id": "bts:Glioma;Malignant;Other;OtherLow-GradeB-CellLymphomasOfTheCNS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Timeseries", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVIndex", + "@type": "rdfs:Class", + "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", + "rdfs:label": "ImageFOVIndex", + "rdfs:subClassOf": [ { - "@id": "bts:Ganglioneuroma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Index", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeX", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view X dimension. Floating point", + "rdfs:label": "ImageFOVSizeX", + "rdfs:subClassOf": [ { - "@id": "bts:Neoplasm;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size X", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeXUnit", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageFOVSizeXUnit", + "rdfs:subClassOf": [ { - "@id": "bts:ClearCellRenalCellCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size X Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeY", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view Y dimension. Floating point value", + "rdfs:label": "ImageFOVSizeY", + "rdfs:subClassOf": [ { - "@id": "bts:Ependymoma;NOS;AtypicalMeningioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size Y", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeYUnit", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageFOVSizeYUnit", + "rdfs:subClassOf": [ { - "@id": "bts:Oligodendroglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size Y Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFrameAveraging", + "@type": "rdfs:Class", + "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", + "rdfs:label": "ImageFrameAveraging", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantPeripheralNerveSheathTumor" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Frame Averaging", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageIdentifier", + "@type": "rdfs:Class", + "rdfs:comment": "Unique internal image identifier. eg \"Image:0\". (To be extracted from OME-XML)", + "rdfs:label": "ImageIdentifier", + "rdfs:subClassOf": [ { - "@id": "bts:Glioma;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Identifier", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageDimensionOrder", + "@type": "rdfs:Class", + "rdfs:comment": "The order in which the individual planes of data are interleaved.", + "rdfs:label": "ImageDimensionOrder", + "rdfs:subClassOf": [ { - "@id": "bts:Sertoli-LeydigCellTumorOfIntermediateDifferentiation;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Dimension Order", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeX", + "@type": "rdfs:Class", + "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeX", + "rdfs:subClassOf": [ { - "@id": "bts:DesmoplasticNodularMedulloblastoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size X", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeXUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeXUnit", + "rdfs:subClassOf": [ { - "@id": "bts:PapillaryMicrocarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size X Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeY", + "@type": "rdfs:Class", + "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeY", + "rdfs:subClassOf": [ { - "@id": "bts:Craniopharyngioma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Y", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeYUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeYUnit", + "rdfs:subClassOf": [ { - "@id": "bts:LowGradeGlialNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Y Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeZ", + "@type": "rdfs:Class", + "rdfs:comment": "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeZ", + "rdfs:subClassOf": [ { - "@id": "bts:Leiomyosarcoma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Z", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeZUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeZUnit", + "rdfs:subClassOf": [ { - "@id": "bts:FollicularAdenocarcinoma;NOS" + "@id": "bts:Thing" } ], - "sms:displayName": "Individual Primary Diagnosis", - "sms:required": "sms:true", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Z Unit", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:IndividualPrimarySite", + "@id": "bts:ImagePixelsBigEndian", "@type": "rdfs:Class", - "rdfs:comment": "Primary site in the body associated with the primary diagnosis.", - "rdfs:label": "IndividualPrimarySite", + "rdfs:comment": "Boolean (True/False)", + "rdfs:label": "ImagePixelsBigEndian", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -263948,3538 +269389,4230 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Abdomen" + "@id": "bts:True" }, { - "@id": "bts:AbdominalWall" - }, + "@id": "bts:False" + } + ], + "sms:displayName": "Image Pixels BigEndian", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePlaneCount", + "@type": "rdfs:Class", + "rdfs:comment": "Number of Z-planes (not to be confused with downsampled \"pyramid\"). Integer >=1", + "rdfs:label": "ImagePlaneCount", + "rdfs:subClassOf": [ { - "@id": "bts:Acetabulum" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Plane Count", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageChannelSize", + "@type": "rdfs:Class", + "rdfs:comment": "Number of channels. Integer >= 1", + "rdfs:label": "ImageChannelSize", + "rdfs:subClassOf": [ { - "@id": "bts:AdjacentOrgan" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Channel Size", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageNumberofTimepoints", + "@type": "rdfs:Class", + "rdfs:comment": "Number of time points. Integer >= 1", + "rdfs:label": "ImageNumberofTimepoints", + "rdfs:subClassOf": [ { - "@id": "bts:AdrenalGland" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Number of Timepoints", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageXPixels", + "@type": "rdfs:Class", + "rdfs:comment": "Size of image: X dimension (in pixels). Integer >= 1", + "rdfs:label": "ImageXPixels", + "rdfs:subClassOf": [ { - "@id": "bts:Anal/Perianal" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image X Pixels", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageYPixels", + "@type": "rdfs:Class", + "rdfs:comment": "Size of image: Y dimension (in pixels). Integer >= 1", + "rdfs:label": "ImageYPixels", + "rdfs:subClassOf": [ { - "@id": "bts:AnkleJoint" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Y Pixels", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageZPixels", + "@type": "rdfs:Class", + "rdfs:comment": "Size of image: Z dimension (in pixels). Integer >= 1", + "rdfs:label": "ImageZPixels", + "rdfs:subClassOf": [ { - "@id": "bts:AnteriorSkullBase" - }, - { - "@id": "bts:Anus" - }, - { - "@id": "bts:Appendix" - }, - { - "@id": "bts:AsciticFluid" - }, - { - "@id": "bts:Axilla" - }, - { - "@id": "bts:AxillaryNodes" - }, - { - "@id": "bts:Bladder" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Z Pixels", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePixelType", + "@type": "rdfs:Class", + "rdfs:comment": "Data type for each pixel value. E.g. \"uint16\"", + "rdfs:label": "ImagePixelType", + "rdfs:subClassOf": [ { - "@id": "bts:Bladder/Prostate" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Pixel Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Cm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Cm", + "rdfs:subClassOf": [ { - "@id": "bts:Bone" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "cm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Mm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Mm", + "rdfs:subClassOf": [ { - "@id": "bts:BoneFace" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "mm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Μm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Μm", + "rdfs:subClassOf": [ { - "@id": "bts:BoneMarrow" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Β΅m", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Nm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Nm", + "rdfs:subClassOf": [ { - "@id": "bts:BoneorBoneMarrow" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "nm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Γ…", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Γ…", + "rdfs:subClassOf": [ { - "@id": "bts:Brain" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Γ…", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Air", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Air", + "rdfs:subClassOf": [ { - "@id": "bts:Brain/Leptomeninges" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Air", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Oil", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Oil", + "rdfs:subClassOf": [ { - "@id": "bts:Breast" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Oil", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Water", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Water", + "rdfs:subClassOf": [ { - "@id": "bts:Bronchus" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Water", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Multi", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Multi", + "rdfs:subClassOf": [ { - "@id": "bts:Buttock" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Multi", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Glycerol", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Glycerol", + "rdfs:subClassOf": [ { - "@id": "bts:Calcaneum" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Glycerol", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:True", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "True", + "rdfs:subClassOf": [ { - "@id": "bts:CarpalBone" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:CaudaEquinaSpinalCord" + "@id": "bts:ImagePixelsBigEndian" }, { - "@id": "bts:CeliacNodes" + "@id": "bts:ToolPackageDependenciesPresent" }, { - "@id": "bts:CentralNervousSystem" + "@id": "bts:VisiumImageRe-orientation" }, { - "@id": "bts:Cerebellum" - }, + "@id": "bts:VisiumAppliedHardTrimming" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "True", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:False", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "False", + "rdfs:subClassOf": [ { - "@id": "bts:CerebrospinalFluid" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:CervicalNodes" + "@id": "bts:ImagePixelsBigEndian" }, { - "@id": "bts:CervicalSpine" + "@id": "bts:ToolPackageDependenciesPresent" }, { - "@id": "bts:CervicalVertebra" + "@id": "bts:VisiumImageRe-orientation" }, { - "@id": "bts:Cervix" - }, + "@id": "bts:VisiumAppliedHardTrimming" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "False", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3Image", + "@type": "rdfs:Class", + "rdfs:comment": "Quality controlled or co-registered image data", + "rdfs:label": "ImagingLevel3Image", + "rdfs:subClassOf": [ { - "@id": "bts:Cheek" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Imaging Level 3 Image", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:Chest" - }, + "@id": "bts:FileView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:ChestWall" + "@id": "bts:Component" }, { - "@id": "bts:Choroid" + "@id": "bts:ImagingLevel3ImageId" }, { - "@id": "bts:Clavicle" + "@id": "bts:Filename" }, { - "@id": "bts:Coccyx" + "@id": "bts:ImagingChannelKey" }, { - "@id": "bts:Colon" + "@id": "bts:ImagingLevel2Key" }, { - "@id": "bts:Craniospinal" + "@id": "bts:ImageAssayType" }, { - "@id": "bts:Cutaneous" + "@id": "bts:ImageProtocolLink" }, { - "@id": "bts:DeepFacialAreas" + "@id": "bts:ImagePlatformModel" }, { - "@id": "bts:DeepGray(e.g.BasalgangliaorThalamus)" + "@id": "bts:ImagePlatformManufacturer" }, { - "@id": "bts:Dermis" + "@id": "bts:ImageSoftware" }, { - "@id": "bts:DistantLymphNodes" + "@id": "bts:ImageObjective" }, { - "@id": "bts:DorsalSpine" + "@id": "bts:ImageNominalMagnification" }, { - "@id": "bts:Duodenum" + "@id": "bts:ImageLenseAperture" }, { - "@id": "bts:Ear-LateralSkullBaseandNasopharynx" + "@id": "bts:ImageWorkingDistance" }, { - "@id": "bts:ElbowJoint" + "@id": "bts:ImageImmersionType" }, { - "@id": "bts:Epididymis" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:Epitrochlear" + "@id": "bts:ImageZstack" }, { - "@id": "bts:EpitrochlearorBrachialNodes" + "@id": "bts:ImageTimeseries" }, { - "@id": "bts:Esophagus" + "@id": "bts:ImageFOVIndex" }, { - "@id": "bts:EthmoidBone" + "@id": "bts:ImageFOVSizeX" }, { - "@id": "bts:Eyelid" + "@id": "bts:ImageFOVSizeY" }, { - "@id": "bts:Face" + "@id": "bts:ImageFOVSizeYUnit" }, { - "@id": "bts:FallopianTube" - }, + "@id": "bts:ImageFrameAveraging" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3ImageId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel3ImageId", + "rdfs:subClassOf": [ { - "@id": "bts:FemaleReproductiveSystemPart" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel3Image_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel2Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel2Key", + "rdfs:subClassOf": [ { - "@id": "bts:Femur" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel2 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel2.ImagingLevel2_id Value" + ] + }, + { + "@id": "bts:ImagingLevel3Segments", + "@type": "rdfs:Class", + "rdfs:comment": "Image segmentation mask information", + "rdfs:label": "ImagingLevel3Segments", + "rdfs:subClassOf": [ { - "@id": "bts:Fibula" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Imaging Level 3 Segments", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:FibulaHead" - }, + "@id": "bts:FileView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Finger" + "@id": "bts:Component" }, { - "@id": "bts:Foot" + "@id": "bts:ImagingLevel3SegmentsId" }, { - "@id": "bts:FootBone" + "@id": "bts:Filename" }, { - "@id": "bts:FootJoint" + "@id": "bts:ImagingLevel2Key" }, { - "@id": "bts:FootPhalanges" + "@id": "bts:ImagingLevel3ImageKey" }, { - "@id": "bts:Forearm" + "@id": "bts:ImageSegmentationDataType" }, { - "@id": "bts:FourthVentricle" + "@id": "bts:ImageParameterfile" }, { - "@id": "bts:FrontalBone" + "@id": "bts:SoftwareandVersion" }, { - "@id": "bts:FrontalCortex" + "@id": "bts:ImageObjectClass" }, { - "@id": "bts:FrontalLobe" + "@id": "bts:ImageObjectClassDescription" }, { - "@id": "bts:Gallbladder" - }, + "@id": "bts:ImageNumberofObjects" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3SegmentsId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel3SegmentsId", + "rdfs:subClassOf": [ { - "@id": "bts:GastrointestinalTract" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel3Segments_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3ImageKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel3Image_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel3ImageKey", + "rdfs:subClassOf": [ { - "@id": "bts:Hand" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel3Image Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel3Image.ImagingLevel3Image_id Value" + ] + }, + { + "@id": "bts:ImageSegmentationDataType", + "@type": "rdfs:Class", + "rdfs:comment": "Specifies how the segmentation is stored", + "rdfs:label": "ImageSegmentationDataType", + "rdfs:subClassOf": [ { - "@id": "bts:HandBone" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:HandJoint" + "@id": "bts:Mask" }, { - "@id": "bts:HandPhalanges" + "@id": "bts:Outline" }, { - "@id": "bts:Head" + "@id": "bts:Polygon" }, { - "@id": "bts:HeadandNeck" + "@id": "bts:ProbabilityMap" }, { - "@id": "bts:Heart" - }, + "@id": "bts:Point" + } + ], + "sms:displayName": "Image Segmentation Data Type", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ImageParameterfile", + "@type": "rdfs:Class", + "rdfs:comment": "Path in Synapse to a text file listing algorithm version numbers and relevant parameters needed to reproduce the analysis", + "rdfs:label": "ImageParameterfile", + "rdfs:subClassOf": [ { - "@id": "bts:Hip" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Parameter file", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SoftwareandVersion", + "@type": "rdfs:Class", + "rdfs:comment": "Name of software used to generate the information contained in the file. String", + "rdfs:label": "SoftwareandVersion", + "rdfs:subClassOf": [ { - "@id": "bts:Hip/InguinalRegion" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Software and Version", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ImageObjectClass", + "@type": "rdfs:Class", + "rdfs:comment": "Defines the structure that the mask delineates", + "rdfs:label": "ImageObjectClass", + "rdfs:subClassOf": [ { - "@id": "bts:Humerus" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Hypodermis" + "@id": "bts:Nucleus" }, { - "@id": "bts:Hypopharynx" + "@id": "bts:Cytoplasm" }, { - "@id": "bts:IliacCrest" + "@id": "bts:PlasmaMembrane" }, { - "@id": "bts:Ilium" + "@id": "bts:WholeCell" }, { - "@id": "bts:InferiorLimb" + "@id": "bts:Spot" }, { - "@id": "bts:InfraclavicularNodes" - }, + "@id": "bts:Other" + } + ], + "sms:displayName": "Image Object Class", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ImageObjectClassDescription", + "@type": "rdfs:Class", + "rdfs:comment": "If Imaging Object Class is \"Other\", please use this field to provide a text description of the imaging object class associated with the segmentation data", + "rdfs:label": "ImageObjectClassDescription", + "rdfs:subClassOf": [ { - "@id": "bts:Inguinal" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Object Class Description", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ImageNumberofObjects", + "@type": "rdfs:Class", + "rdfs:comment": "The number of objects (eg cells) described", + "rdfs:label": "ImageNumberofObjects", + "rdfs:subClassOf": [ { - "@id": "bts:InguinalorFemoralNodes" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Number of Objects", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:Mask", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Mask", + "rdfs:subClassOf": [ { - "@id": "bts:Intra-abdominal" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Mask", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Outline", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Outline", + "rdfs:subClassOf": [ { - "@id": "bts:Intraperitoneal" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Outline", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Polygon", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Polygon", + "rdfs:subClassOf": [ { - "@id": "bts:Intraspinal" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Polygon", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProbabilityMap", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ProbabilityMap", + "rdfs:subClassOf": [ { - "@id": "bts:Intrathoracic" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Probability Map", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Point", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Point", + "rdfs:subClassOf": [ { - "@id": "bts:Ischium" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Point", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Nucleus", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Nucleus", + "rdfs:subClassOf": [ { - "@id": "bts:Kidney" - }, + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Nucleus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Cytoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Cytoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:KneeJoint" - }, + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cytoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlasmaMembrane", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlasmaMembrane", + "rdfs:subClassOf": [ { - "@id": "bts:LacrimalBone" - }, + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plasma Membrane", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:WholeCell", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "WholeCell", + "rdfs:subClassOf": [ { - "@id": "bts:LargeVessels" - }, + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Whole Cell", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Spot", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Spot", + "rdfs:subClassOf": [ { - "@id": "bts:Larynx" - }, + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Spot", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel4", + "@type": "rdfs:Class", + "rdfs:comment": "Derived imaging data or object by feature array", + "rdfs:label": "ImagingLevel4", + "rdfs:subClassOf": [ { - "@id": "bts:Larynx-Trachea" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Imaging Level 4", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:LateralVentricle" - }, + "@id": "bts:FileView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Leg" + "@id": "bts:Component" }, { - "@id": "bts:Leptomeningeal" + "@id": "bts:ImagingLevel4Id" }, { - "@id": "bts:Liver" + "@id": "bts:Filename" }, { - "@id": "bts:Liver/BiliaryTract" + "@id": "bts:ImagingLevel2Key" }, { - "@id": "bts:LowerArm" + "@id": "bts:ImagingLevel3ImageKey" }, { - "@id": "bts:LowerExtremity" + "@id": "bts:ImagingLevel3SegmentsKey" }, { - "@id": "bts:LowerLeg" + "@id": "bts:ImageParameterfile" }, { - "@id": "bts:LumbarSpinalCord" + "@id": "bts:ImageSoftware" }, { - "@id": "bts:LumbarSpine" + "@id": "bts:ImageNumberofObjects" }, { - "@id": "bts:LumbarVertebra" + "@id": "bts:ImageNumberofFeatures" }, { - "@id": "bts:Lung" + "@id": "bts:ImageObjectClass" }, { - "@id": "bts:LymphNode" - }, + "@id": "bts:ImageSummaryStatistic" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel4Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel4Id", + "rdfs:subClassOf": [ { - "@id": "bts:LymphaticBasin" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel4_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3SegmentsKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel3Segments_id foreign key(s) that link metadata entries as part of the same Dataset. 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Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.", + "rdfs:label": "IndividualGender", + "rdfs:subClassOf": [ { - "@id": "bts:OculusSinister(LeftEye)" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:OculusUterque(BothEyes)" + "@id": "bts:Female" }, { - "@id": "bts:Omentum" + "@id": "bts:Male" }, { - "@id": "bts:OpticChiasm" + "@id": "bts:Intersex" }, { - "@id": "bts:OpticNerve" + "@id": "bts:Unknown" }, { - "@id": "bts:OralCavity" + "@id": "bts:Unspecified" }, { - "@id": "bts:Orbit" - }, + "@id": "bts:NotReported" + } + ], + "sms:displayName": "Individual Gender", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:IndividualAgeatDiagnosis", + "@type": "rdfs:Class", + "rdfs:comment": "Age at the time the individual was diagnosed, expressed in years.", + "rdfs:label": "IndividualAgeatDiagnosis", + "rdfs:subClassOf": [ { - "@id": "bts:Oropharynx" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual Age at Diagnosis", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:IndividualDiseaseType", + "@type": "rdfs:Class", + "rdfs:comment": "The type of tumor associated with the specimen. 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"@id": "bts:T1b" + "@id": "bts:Ganglioglioma;NOS;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:T1b1" + "@id": "bts:DermoidCyst" }, { - "@id": "bts:T1b2" + "@id": "bts:AdenocarcinomaCombinedWithOtherTypesOfCarcinoma" }, { - "@id": "bts:T1c" + "@id": "bts:PrecursorCellLymphoblasticLymphoma;NOS" }, { - "@id": "bts:T1mi" + "@id": "bts:PosteriorFossaEpendymoma;CNSWHOGrade2" }, { - "@id": "bts:T2" + "@id": "bts:PituitaryAdenoma;NOS" }, { - "@id": "bts:T2a" + "@id": "bts:Neoplasm;Malignant;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:T2a1" + "@id": "bts:SexCord-GonadalStromalTumor;IncompletelyDifferentiated" }, { - "@id": "bts:T2a2" + "@id": "bts:HighGradeFollicularDerivedThyroidCarcinoma" }, { - "@id": "bts:T2b" + "@id": "bts:DesmoplasticFibroma" }, { - "@id": "bts:T2c" + "@id": "bts:Perineuroma" }, { - "@id": "bts:T2d" + "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant;CNSWHOGrade4" }, { - "@id": "bts:T3" + "@id": "bts:Ganglioglioma" }, { - "@id": "bts:T3a" + "@id": "bts:Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:T3b" + "@id": "bts:ParatesticularRhabdomyosarcomaWithDiffuseAnaplasia" }, { - "@id": "bts:T3c" + "@id": "bts:Hemangioblastoma" }, { - "@id": "bts:T3d" + "@id": "bts:ColorectalCarcinoma" }, { - "@id": "bts:T4" + "@id": "bts:AcuteMyelomonocyticLeukemia" }, { - "@id": "bts:T4a" + "@id": "bts:DiffuseMidlineGlioma;H3K27-Altered" }, { - "@id": "bts:T4b" + "@id": "bts:T-LymphoblasticLymphoma" }, { - "@id": "bts:T4c" + "@id": "bts:Lymphangioma;NOS" }, { - "@id": "bts:T4d" + "@id": "bts:Neoplasm;Benign" }, { - "@id": "bts:T4e" + "@id": "bts:PapillaryIntralymphaticAngioendothelioma" }, { - "@id": "bts:T5" + "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;ZFTAFusion-Positive" }, { - "@id": "bts:Ta" + "@id": "bts:UnclassifiedSarcomaWithRoundCellMorphology" }, { - "@id": "bts:Tis" + "@id": "bts:Glioma" }, { - "@id": "bts:Tis(DCIS)" + "@id": "bts:Medulloblastoma;Classic(Biphasic)HistologicType;Non-SHH/Non-WNTMolecularGroup;CNSWHOGrade4" }, { - "@id": "bts:Tis(LCIS)" + "@id": "bts:SoftTissueSarcoma" }, { - "@id": "bts:Tis(Paget's)" + "@id": "bts:Xanthogranuloma" }, { - "@id": "bts:TX" + "@id": "bts:Neoplasm;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" }, { - "@id": "bts:Unknown" - } - ], - "sms:displayName": "Individual Primary Tumor Stage", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IndividualSiteofOrigin", - "@type": "rdfs:Class", - "rdfs:comment": "The text term used to describe the anatomic site of origin, of the patient's malignant disease.", - "rdfs:label": "IndividualSiteofOrigin", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Bronchio-AlveolarCarcinoma;Mucinous" + }, { - "@id": "bts:AbdominalAorta" + "@id": "bts:HepatocellularCarcinoma;Fibrolamellar" }, { - "@id": "bts:AbdominalEsophagus" + "@id": "bts:PancreaticNeuroendocrineTumor;Nonfunctioning" }, { - "@id": "bts:AbdominalMuscle" + "@id": "bts:MyxopapillaryEpendymoma" }, { - "@id": "bts:AbdominalSkin" + "@id": "bts:Chondrosarcoma;NOS" }, { - "@id": "bts:AbdominalWall" + "@id": "bts:FavorGanglioglioma" }, { - "@id": "bts:AbducensNerve" + "@id": "bts:PapillaryTumorOfPinealRegion" }, { - "@id": "bts:AccessoryNerve" + "@id": "bts:AcuteMyeloidLeukemiaWithMutatedNPM1" }, { - "@id": "bts:Acetabulum" + "@id": "bts:EpithelioidHemangioendothelioma;NOS" }, { - "@id": "bts:AcromioclavicularJoint" + "@id": "bts:Neuroblastoma;NOS" }, { - "@id": "bts:AdiposeTissue" + "@id": "bts:ChondroidChordoma" }, { - "@id": "bts:AdrenalCortex" + "@id": "bts:InfiltratingDuctAndLobularCarcinoma" }, { - "@id": "bts:AdrenalGland" + "@id": "bts:MitoticallyActiveGlial/GlioneuronalNeoplasm" }, { - "@id": "bts:AdrenalMedulla" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:AmpullaofVater" + "@id": "bts:CPNET" }, { - "@id": "bts:AnalCanal" + "@id": "bts:MycosisFungoides;LangerhansCellHistiocytosis;NOS" }, { - "@id": "bts:AnalTransitionalZone" + "@id": "bts:T-LymphoblasticLeukemia" }, { - "@id": "bts:AnkleJoint" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:AnkleSkin" + "@id": "bts:ClearCellMeningioma;Meningioma;Other" }, { - "@id": "bts:AntecubitalRegion" + "@id": "bts:AmeloblasticCarcinosarcoma" }, { - "@id": "bts:AnteriorCranialFossa" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:AnteriorMediastinum" + "@id": "bts:MeningothelialMeningioma" }, { - "@id": "bts:AnteriorSurfaceoftheEpiglottis" + "@id": "bts:EpithelioidCellMelanoma" }, { - "@id": "bts:AnteriorWalloftheBladder" + "@id": "bts:ProstateCancer" }, { - "@id": "bts:AnteriorWalloftheNasopharynx" + "@id": "bts:Paraganglioma;Malignant" }, { - "@id": "bts:AntrumPylori" + "@id": "bts:SmallCellSarcoma" }, { - "@id": "bts:Anus" + "@id": "bts:CystosarcomaPhyllodes;NOS" }, { - "@id": "bts:Aorta" + "@id": "bts:Seminoma;NOS" }, { - "@id": "bts:AortocavalLymphNode" + "@id": "bts:YolkSacTumor;NOS" }, { - "@id": "bts:ApexoftheTongue" + "@id": "bts:IntraductalCarcinomaNOS" }, { - "@id": "bts:Aponeurosis" + "@id": "bts:Adenocarcinoma;EndocervicalType" }, { - "@id": "bts:AppendageoftheUterus" + "@id": "bts:Neurofibroma;NOS" }, { - "@id": "bts:Appendix" + "@id": "bts:Astroblastoma;Astroblastoma;MN1-Altered;High-GradeGlioma" }, { - "@id": "bts:Areola" + "@id": "bts:MeningothelialMeningioma;Grade1" }, { - "@id": "bts:ArmSkin" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:Artery" + "@id": "bts:Unknown" }, { - "@id": "bts:ArticularCartilage" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;CNSSarcoma;EwingSarcoma" }, { - "@id": "bts:AryepiglotticFold" + "@id": "bts:Glioma;Malignant;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" }, { - "@id": "bts:ArytenoidCartilage" + "@id": "bts:EndometrioidAdenocarcinoma;NOS" }, { - "@id": "bts:AscendingColon" + "@id": "bts:Pancreas-AdenocarcinomaDuctalType" }, { - "@id": "bts:AutonomicNervousSystem" + "@id": "bts:GiantCellGlioblastoma;Glioblastoma;IDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:Axilla" + "@id": "bts:Angiomyosarcoma" }, { - "@id": "bts:AxillaryArtery" + "@id": "bts:CarcinoidTumor" }, { - "@id": "bts:AxillaryLymphNode" + "@id": "bts:AdenosquamousCarcinoma" }, { - "@id": "bts:AxillaryTailoftheBreast" + "@id": "bts:MetastaticNeuroblastoma" }, { - "@id": "bts:Back" + "@id": "bts:ClearCellSarcomaOfKidney" }, { - "@id": "bts:BartholinGland" + "@id": "bts:InfiltratingDuctMixedWithOtherTypesOfCarcinoma" }, { - "@id": "bts:BasalGanglia" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" }, { - "@id": "bts:BaseoftheTongue" + "@id": "bts:EmbryonalCarcinoma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:Biceps" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;CNSGermCellTumors;CNSGerminoma" }, { - "@id": "bts:BicepsFemoris" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PleomorphicXanthoastrocytoma" }, { - "@id": "bts:BileCanaliculus" + "@id": "bts:LowCumulativeSunDamageMelanoma" }, { - "@id": "bts:BileDuct" + "@id": "bts:SupratentorialEpendymoma" }, { - "@id": "bts:BiliaryTract" + "@id": "bts:OssifyingFibromyxoidTumor;NOS" }, { - "@id": "bts:Bladder" + "@id": "bts:DiffuseLargeB-CellLymphoma;NOS" }, { - "@id": "bts:BladderNeck" + "@id": "bts:AdenocarcinomaWithNeuroendocrineDifferentiation" }, { - "@id": "bts:BladderTrigone" + "@id": "bts:AtypicalMeningioma" }, { - "@id": "bts:Blood" + "@id": "bts:Pineoblastoma" }, { - "@id": "bts:BloodVessel" + "@id": "bts:ChronicMyeloidLeukemia;NOS" }, { - "@id": "bts:BodyofStomach" + "@id": "bts:AtypicalChoroidPlexusPapilloma" }, { - "@id": "bts:BodyofthePancreas" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFB" }, { - "@id": "bts:BodyofthePenis" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS;High-GradeGlioma" }, { - "@id": "bts:Bone" + "@id": "bts:OxyphilicAdenocarcinoma" }, { - "@id": "bts:BoneMarrow" + "@id": "bts:FavorPilocyticAstrocytoma;CNSWHOGrade1" }, { - "@id": "bts:BoneoftheExtremity" + "@id": "bts:PoorlyDifferentiated;IntermediateMitotic-KaryorrhecticIndex" }, { - "@id": "bts:BrachialLymphNode" + "@id": "bts:ClearCellMeningioma" }, { - "@id": "bts:BrachialPlexus" + "@id": "bts:Medulloblastoma;ClassicHistologicType;CNSWHOGrade4" }, { - "@id": "bts:Brachialis" + "@id": "bts:AppearancesConsistentWithAlveolarSoftPartSarcoma" }, { - "@id": "bts:Brain" + "@id": "bts:DedifferentiatedLiposarcoma" }, { - "@id": "bts:BrainDuraMater" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:BrainStem" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:BrainVentricle" + "@id": "bts:TubularAdenocarcinoma" }, { - "@id": "bts:BranchialCleftRemnant" + "@id": "bts:Rhabdomyosarcoma;MostLikelyAnEmbryonalCarcinoma" }, { - "@id": "bts:Breast" + "@id": "bts:Adenocarcinoma;NOS" }, { - "@id": "bts:BroadLigament" + "@id": "bts:PleuropulmonaryBlastoma" }, { - "@id": "bts:BronchialLymphNode" + "@id": "bts:BasaloidSquamousCellCarcinoma" }, { - "@id": "bts:Bronchiole" + "@id": "bts:Oligodendroglioma;Anaplastic;NOS" }, { - "@id": "bts:Bronchus" + "@id": "bts:PilocyticAstrocytoma;WHOGrade1" }, { - "@id": "bts:BuccalMucosa" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Buttock" + "@id": "bts:AbdominalFibromatosis" }, { - "@id": "bts:C1Vertebra" + "@id": "bts:Hamartoma" }, { - "@id": "bts:C2Vertebra" + "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:Calcaneum" + "@id": "bts:ChoroidPlexusPapilloma;NOS;ChoroidPlexusTumors" }, { - "@id": "bts:Calf" + "@id": "bts:BurkittLymphoma;NOS" }, { - "@id": "bts:CardiacAtrium" + "@id": "bts:LymphoepithelialCarcinoma" }, { - "@id": "bts:CardiacVentricle" + "@id": "bts:Bronchiolo-AlveolarCarcinoma;Non-Mucinous" }, { - "@id": "bts:Carina" + "@id": "bts:KidneyClearCellRenalCarcinoma" }, { - "@id": "bts:CarotidArtery" + "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma" }, { - "@id": "bts:CarotidBody" + "@id": "bts:AdenocarcinomaInSituInAdenomatousPolyp" }, { - "@id": "bts:CarpalBone" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant" }, { - "@id": "bts:CarpalRegion" + "@id": "bts:SmallBlueCellTumor.FavorMedulloblastoma" }, { - "@id": "bts:Cartilage" + "@id": "bts:BLymphoblasticLeukemia/Lymphoma;NOS" }, { - "@id": "bts:CaudaEquina" + "@id": "bts:EmbryonalTumorWithMulti-LayeredRosettes" }, { - "@id": "bts:Cecum" + "@id": "bts:ChronicEosinophilicLeukemia" }, { - "@id": "bts:CeliacArtery" + "@id": "bts:MixedGlioma" }, { - "@id": "bts:CeliacLymphNode" + "@id": "bts:BasalCellAdenocarcinoma" }, { - "@id": "bts:CentralNervousSystem" + "@id": "bts:OlfactoryNeuroblastoma" }, { - "@id": "bts:CentralPortionoftheBreast" + "@id": "bts:TransitionalCellCarcinoma;NOS" }, { - "@id": "bts:CerebellopontineAngle" + "@id": "bts:ClearCellSarcoma;NOS" }, { - "@id": "bts:Cerebellum" + "@id": "bts:EmbryonalRhabdomyosarcoma;High-Grade" }, { - "@id": "bts:CerebralCortex" + "@id": "bts:AngiocentricGlioma" }, { - "@id": "bts:CerebralHemisphere" + "@id": "bts:DiffuseMidlineGlioma;H3K27Altered;WHOGrade4" }, { - "@id": "bts:CerebralMeninges" + "@id": "bts:Osteoblastoma;NOS" }, { - "@id": "bts:CerebralPeduncle" + "@id": "bts:MalignantNeoplasmWithRhabdomyoblasticDifferentiation;HighGrade" }, { - "@id": "bts:CerebralWhiteMatter" + "@id": "bts:MyxopapillaryEpendymoma(CNSWHOGradeII)" }, { - "@id": "bts:CeruminousGland" + "@id": "bts:MelanomaInSitu" }, { - "@id": "bts:CervicalEsophagus" + "@id": "bts:SecretoryCarcinoma" }, { - "@id": "bts:CervicalGland" + "@id": "bts:PilocyticAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:CervicalLymphNode" + "@id": "bts:Rhabdomyosarcoma;FavorAlveolarType" }, { - "@id": "bts:CervixUteri" + "@id": "bts:Adenocarcinoma;MetastaticNOS" }, { - "@id": "bts:Cheek" + "@id": "bts:Fibrosarcoma;NOS" }, { - "@id": "bts:Chest" + "@id": "bts:Glioblastoma" }, { - "@id": "bts:ChestWall" + "@id": "bts:AtypicalChoroidPlexusPapilloma;ChoroidPlexusTumors" }, { - "@id": "bts:Choroid" + "@id": "bts:Ganglioneuroma;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:ChoroidPlexus" + "@id": "bts:DesmoplasticMelanoma;NOS" }, { - "@id": "bts:ChoroidPlexusoftheFourthVentricle" + "@id": "bts:ChoroidPlexusCarcinoma" }, { - "@id": "bts:ChoroidPlexusoftheLateralVentricle" + "@id": "bts:SoftTissueTumor;Benign" }, { - "@id": "bts:ChoroidPlexusoftheThirdVentricle" + "@id": "bts:Medulloblastoma;NOS" }, { - "@id": "bts:CiliaryBody" + "@id": "bts:Glioblastoma;NOS;Medulloblastoma;NOS" }, { - "@id": "bts:Clitoris" + "@id": "bts:ResidualAstrocytoma" }, { - "@id": "bts:Coccyx" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(V;11q23);MLLRearranged" }, { - "@id": "bts:CochlearNerve" + "@id": "bts:ExtraAdrenalParaganglioma" }, { - "@id": "bts:Colon" + "@id": "bts:MucoepidermoidCarcinoma" }, { - "@id": "bts:CommissureoftheLip" + "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:CommonBileDuct" + "@id": "bts:ChoroidPlexusPapilloma;NOS" }, { - "@id": "bts:Concha" + "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:Conjunctiva" + "@id": "bts:B-LymphoblasticLeukemia/Lymphoma;NOS" }, { - "@id": "bts:ConnectiveTissue" + "@id": "bts:HodgkinLymphoma;NodularSclerosis;NOS" }, { - "@id": "bts:ConusMedullaris" + "@id": "bts:Fibroma" }, { - "@id": "bts:Coracobrachialis" + "@id": "bts:Craniopharyngioma;NOS;AdamantinomatousCraniopharyngioma" }, { - "@id": "bts:Cornea" + "@id": "bts:T-Cell/HistiocyteRichLargeB-CellLymphoma" }, { - "@id": "bts:CorneoscleralLimbus" + "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade4" }, { - "@id": "bts:CorpusCallosum" + "@id": "bts:AcuteErythroidLeukemia" }, { - "@id": "bts:CorpusStriatum" + "@id": "bts:Glioma;HistologicallyLowGrade" }, { - "@id": "bts:CorpusUteri" + "@id": "bts:MucousAdenocarcinoma" }, { - "@id": "bts:CostalCartilage" + "@id": "bts:Glioma;Malignant;Ganglioglioma;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:CostovertebralJoint" + "@id": "bts:NodularMelanoma" }, { - "@id": "bts:CowperGland" + "@id": "bts:SynovialSarcoma;Biphasic" }, { - "@id": "bts:CranialNerve" + "@id": "bts:Neoplasm;Metastatic" }, { - "@id": "bts:CraniopharyngealDuct" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:CricoidCartilage" + "@id": "bts:Thymoma;NOS" }, { - "@id": "bts:Cul-de-sac" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:CuneiformCartilage" + "@id": "bts:Desmoplastic/NodularMedulloblastoma" }, { - "@id": "bts:CysticDuct" + "@id": "bts:PapillaryGlioneuronalTumor" }, { - "@id": "bts:DescendingColon" + "@id": "bts:MixedPhenotypeAcuteLeukemia;T/Myeloid;NOS" }, { - "@id": "bts:Diaphragm" + "@id": "bts:Cholangiocarcinoma" }, { - "@id": "bts:DiaphragmaticLymphNode" + "@id": "bts:Astroblastoma;MN1-Altered.HistologicallyHigh-Grade" }, { - "@id": "bts:DomeoftheBladder" + "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated;WithHeterologousElements" }, { - "@id": "bts:DuctofGartner" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;Infant-TypeHemisphericGlioma" }, { - "@id": "bts:DuctusSantorini" + "@id": "bts:JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Duodenum" + "@id": "bts:EmbryonalNeoplasmWithINI-1LossByImmunohistochemistry" }, { - "@id": "bts:DuraMater" + "@id": "bts:MyeloidLeukemiaWithMyelodysplasia-RelatedChanges" }, { - "@id": "bts:Ear" + "@id": "bts:PrimaryCutaneousFollicleCenterLymphoma" }, { - "@id": "bts:EarSkin" + "@id": "bts:ChoroidPlexusCarcinoma;WHOGrade3" }, { - "@id": "bts:Ectocervix" + "@id": "bts:InfiltratingDuctCarcinomaNOS" }, { - "@id": "bts:ElbowJoint" + "@id": "bts:TLymphoblasticLeukemia/Lymphoma" }, { - "@id": "bts:ElbowSkin" + "@id": "bts:Glioma;Malignant;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:Endocardium" + "@id": "bts:MixedGermCellTumor;MyelodysplasticSyndromeWithExcessBlasts" }, { - "@id": "bts:Endocervix" + "@id": "bts:ClearCellAdenocarcinoma;NOS" }, { - "@id": "bts:EndocrineGland" + "@id": "bts:CutaneousT-CellLymphoma;NOS" }, { - "@id": "bts:EndometrialStroma" + "@id": "bts:Germinoma" }, { - "@id": "bts:Endometrium" + "@id": "bts:Neoplasm;Malignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Ependyma" + "@id": "bts:MeningealMelanocytoma" }, { - "@id": "bts:Epicardium" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Epididymis" + "@id": "bts:AcutePromyelocyticLeukemia;T(15;17)(Q22;Q11-12)" }, { - "@id": "bts:EpiduralSpinalCanalSpace" + "@id": "bts:AlveolarSoftPartSarcoma" }, { - "@id": "bts:Epiglottis" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:EpitrochlearLymphNode" + "@id": "bts:MixedEpithelioidAndSpindleCellMelanoma" }, { - "@id": "bts:Esophagus" + "@id": "bts:CNSEmbryonalTumor;NOS;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" }, { - "@id": "bts:EthmoidBone" + "@id": "bts:MalignantTumor;SpindleCellType" }, { - "@id": "bts:EthmoidSinus" + "@id": "bts:Glioma;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:EustachianTube" + "@id": "bts:Glioma;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:ExternalAcousticMeatus" + "@id": "bts:EndometrioidCarcinoma;NOS" }, { - "@id": "bts:ExternalEar" + "@id": "bts:LungSquamousCellCarcinoma;NOS" }, { - "@id": "bts:ExternalLip" + "@id": "bts:PapillaryUrothelialCarcinoma;Non-Invasive" }, { - "@id": "bts:ExternalLowerLip" + "@id": "bts:Neuroblastoma;UndifferentiatedType" }, { - "@id": "bts:ExternalNose" + "@id": "bts:PeriostealOsteosarcoma" }, { - "@id": "bts:ExternalUpperLip" + "@id": "bts:MixedPhenotypeAcuteLeukemia;B/Myeloid;NOS" }, { - "@id": "bts:ExtrahepaticBileDuct" + "@id": "bts:InflammatoryCarcinoma" }, { - "@id": "bts:Eye" + "@id": "bts:Glioblastoma;NOS" }, { - "@id": "bts:Eyebrow" + "@id": "bts:Carcinoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Eyelid" + "@id": "bts:SquamousCellCarcinoma;NOS" }, { - "@id": "bts:FacialBone" + "@id": "bts:HypocellularLowGradeLesion" }, { - "@id": "bts:FacialNerve" + "@id": "bts:GlioblastomaMultiforme" }, { - "@id": "bts:FallopianTube" + "@id": "bts:Pancreas-UndifferentiatedCarcinoma" }, { - "@id": "bts:FalseVocalCord" + "@id": "bts:DifferentiatingNeuroblastoma" }, { - "@id": "bts:FalxCerebelli" + "@id": "bts:MyxoidSpindleCellTumor" }, { - "@id": "bts:FalxCerebri" + "@id": "bts:MerkelCellTumor" }, { - "@id": "bts:Fascia" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS;CNSSarcoma;CNSSarcoma;NOSOrNEC" }, { - "@id": "bts:FemaleGenitalia" + "@id": "bts:Hemangioma;NOS" }, { - "@id": "bts:FemoralArtery" + "@id": "bts:AcuteMyeloidLeukemiaWithAbnormalMarrowEosinophils" }, { - "@id": "bts:FemoralLymphNode" + "@id": "bts:WellDifferentiatedNeuroendocrinceTumor;Grade1" }, { - "@id": "bts:FemoralNerve" + "@id": "bts:Ganglioglioma;Anaplastic" }, { - "@id": "bts:Femur" + "@id": "bts:EpendymomaWHOGrade2" }, { - "@id": "bts:FibrousTissue" + "@id": "bts:SynovialSarcoma;NOS" }, { - "@id": "bts:Fibula" + "@id": "bts:ThymicCarcinoma;NOS" }, { - "@id": "bts:Finger" + "@id": "bts:TumorCells;Malignant" }, { - "@id": "bts:Fingernail" + "@id": "bts:PilomyxoidAstrocytoma" }, { - "@id": "bts:Flank" + "@id": "bts:PapillaryCarcinoma;ColumnarCell" }, { - "@id": "bts:FloorofMouth" + "@id": "bts:PlexiformFibrohistiocyticTumor" }, { - "@id": "bts:Foot" + "@id": "bts:Astrocytoma;NOS;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:FootBone" + "@id": "bts:Carcinoma;Undifferentiated;NOS" }, { - "@id": "bts:FootPhalanx" + "@id": "bts:DermatofibrosarcomaProtuberans;NOS" }, { - "@id": "bts:FootSkin" + "@id": "bts:HighGradeGliomaWithNecrosis;WHOGrade4" }, { - "@id": "bts:Forearm" + "@id": "bts:Infiltratingductularcarcinoma" }, { - "@id": "bts:Forehead" + "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges;JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:FourthVentricle" + "@id": "bts:InfiltratingDuctAndMucinousCarcinoma" }, { - "@id": "bts:FrontalBone" + "@id": "bts:IntraductalPapillaryCarcinoma" }, { - "@id": "bts:FrontalLobe" + "@id": "bts:SerousSurfacePapillaryCarcinoma" }, { - "@id": "bts:FrontalPole" + "@id": "bts:InvasiveCarcinoma" }, { - "@id": "bts:FrontalSinus" + "@id": "bts:HighGradeMalignantEpithelioidNeoplasm" }, { - "@id": "bts:FundusoftheStomach" + "@id": "bts:FavorPilocyticAstrocytomaWithIncreasedProliferationIndices" }, { - "@id": "bts:FundusUteri" + "@id": "bts:Medulloblastoma;ClassicMorphology;CNSWHOGrade4;NON-WNT/NON-SHH;Group4SubtypeByMethylation" }, { - "@id": "bts:Gallbladder" + "@id": "bts:CompositeHodgkinAndNon-HodgkinLymphoma" }, { - "@id": "bts:GastricCardia" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT;NOSOrNEC" }, { - "@id": "bts:GastricLymphNode" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-TYR" }, { - "@id": "bts:GastrocnemiusMuscle" + "@id": "bts:PrimaryCutaneousCD30PositiveT-CellLymphoproliferativeDisorder" }, { - "@id": "bts:GastroesophagealJunction" + "@id": "bts:Hemangioendothelioma;NOS" }, { - "@id": "bts:GastrointestinalTract" + "@id": "bts:HypercellularLesionWithAtypia" }, { - "@id": "bts:Gingiva" + "@id": "bts:EmbryonalCarcinoma;NOS" }, { - "@id": "bts:GlandofLittre" + "@id": "bts:Subependymoma;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:GlansPenis" + "@id": "bts:GermCellTumor;Nonseminomatous" }, { - "@id": "bts:GlobusPallidus" + "@id": "bts:AdrenalCorticalCarcinoma" }, { - "@id": "bts:GlossopharyngealNerve" + "@id": "bts:OlfactoryNeurocytoma" }, { - "@id": "bts:Glottis" + "@id": "bts:LargeCellMedulloblastoma;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:GluteusMaximus" + "@id": "bts:NuclearProteinInTestis(NUT)-AssociatedCarcinoma" }, { - "@id": "bts:GreaterCurvatureoftheStomach" + "@id": "bts:Epithelial-MyoepithelialCarcinoma" }, { - "@id": "bts:Hand" + "@id": "bts:SquamousCellCarcinoma;Keratinizing;NOS" }, { - "@id": "bts:HandDigit1" + "@id": "bts:Ganglioneuroma;Other;Schwannoma" }, { - "@id": "bts:HandPhalanx" + "@id": "bts:GlomusTumor;Malignant" }, { - "@id": "bts:HandSkin" + "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:HardPalate" + "@id": "bts:MalignantLymphoma;Non-Hodgkin;NOS" }, { - "@id": "bts:HeadandNeckLymphNode" + "@id": "bts:EmbryonalRhabdomyosarcoma;NOS;CNSEmbryonalTumor;NOS" }, { - "@id": "bts:HeadofthePancreas" + "@id": "bts:TenosynovialGiantCellTumor;NOS" }, { - "@id": "bts:HeadSkin" + "@id": "bts:HistologicallyLow-GradeGlioma" }, { - "@id": "bts:Heart" + "@id": "bts:Chordoma;NOS;Ganglioneuroblastoma" }, { - "@id": "bts:Helix" + "@id": "bts:Ependymoma;NOS" }, { - "@id": "bts:HematopoieticSystem" + "@id": "bts:InvasiveMammaryCarcinoma" }, { - "@id": "bts:Hepatic" + "@id": "bts:RhabdoidTumor;Malignant" }, { - "@id": "bts:HepaticDuct" + "@id": "bts:Medulloblastoma;ClassicHistology" }, { - "@id": "bts:HepaticFlexure" + "@id": "bts:AdenocarcinomaInVillousAdenoma" }, { - "@id": "bts:HepaticLymphNode" + "@id": "bts:UndifferentiatedSarcoma" }, { - "@id": "bts:Hip" + "@id": "bts:PapillaryThyroidCarcinoma" }, { - "@id": "bts:HipJoint" + "@id": "bts:RenalCellAdenocarcinoma" }, { - "@id": "bts:Hippocampus" + "@id": "bts:HodgkinLymphoma;NOS" }, { - "@id": "bts:Humerus" + "@id": "bts:MalignantHistiocytosis" }, { - "@id": "bts:Hymen" + "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:HyoidBone" + "@id": "bts:SolidPseudopapillaryTumorOfOvary" }, { - "@id": "bts:HypoglossalNerve" + "@id": "bts:AstrocyticGlioma;HistologicallyLow-Grade;MostCompatibleWithPilocyticAstrocytoma" }, { - "@id": "bts:Hypopharynx" + "@id": "bts:InflammatoryMyofibroblasticTumorWithAnAssociatedOdontogenicKeratocyst" }, { - "@id": "bts:Hypothalamus" + "@id": "bts:Myofibromatosis" }, { - "@id": "bts:IleocecalValve" + "@id": "bts:SmallRoundBlueCellTumor" }, { - "@id": "bts:Ileum" + "@id": "bts:Meningioma;Atypical;CNSWHOGrade2" }, { - "@id": "bts:IliacArtery" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;AdamantinomatousCraniopharyngioma;Craniopharyngioma" }, { - "@id": "bts:IliacLymphNode" + "@id": "bts:PilocyticAstrocytoma" }, { - "@id": "bts:IliacVein" + "@id": "bts:LobularAndDuctalCarcinoma" }, { - "@id": "bts:IliopsoasMuscle" + "@id": "bts:Desmoplastic/NodularMedulloblastoma(HistologicallyDefined);CNSWHOGrade4" }, { - "@id": "bts:Ilium" + "@id": "bts:MalignantPeripheralNerveSheathTumorWithRhabdomyoblasticDifferentiation" }, { - "@id": "bts:InferiorVenaCava" + "@id": "bts:TumorCells;Malignant;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:InfraclavicularLymphNode" + "@id": "bts:MalignantTumor" }, { - "@id": "bts:InfraclavicularRegion" + "@id": "bts:BrainTumor" }, { - "@id": "bts:InfratentorialBrain" + "@id": "bts:GastrointestinalStromalTumor;Benign" }, { - "@id": "bts:InguinalLymphNode" + "@id": "bts:RasmussenEncephalitis" }, { - "@id": "bts:InguinalRegion" + "@id": "bts:Medulloblastoma;NOS;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" }, { - "@id": "bts:InnerCanthus" + "@id": "bts:Adenocarcinoma;NOS;Glioblastoma;NOS" }, { - "@id": "bts:InnerEar" + "@id": "bts:MalignantPeripheralNerveSheathTumor(Mpnst)" }, { - "@id": "bts:IntercostalLymphNode" + "@id": "bts:EmbryonalSarcoma" }, { - "@id": "bts:IntercostalMuscle" + "@id": "bts:Neoplasm;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:IntercostalNerve" + "@id": "bts:AnaplasticLargeCellLymphoma;T-CellAndNull-CellType" }, { - "@id": "bts:InternalCapsule" + "@id": "bts:Teratoma;NOS" }, { - "@id": "bts:InternalIliacLymphNode" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS" }, { - "@id": "bts:InternalMammaryArtery" + "@id": "bts:Infiltratingductandlobularcarcinoma" }, { - "@id": "bts:InternalMammaryLymphNode" + "@id": "bts:SclerosingStromalTumor" }, { - "@id": "bts:InternalNare" + "@id": "bts:TumorCells;UncertainWhetherBenignOrMalignant" }, { - "@id": "bts:IntervertebralDisc" + "@id": "bts:AcuteMyeloidLeukemia;NOS;JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Intestine" + "@id": "bts:LobularCarcinoma;NOS" }, { - "@id": "bts:Intra-AbdominalLymphNode" + "@id": "bts:Schwannoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:IntrahepaticBileDuct" + "@id": "bts:Sarcoma;NOS" }, { - "@id": "bts:IntraocularRouteofAdministration" + "@id": "bts:CNSEmbryonalTumorWithRhabdoidFeatures" }, { - "@id": "bts:IntrathoracicLymphNode" + "@id": "bts:GlialNeoplasm;Astrocytoma" }, { - "@id": "bts:Iris" + "@id": "bts:Pancreas-AdenosquamousCarcinoma" }, { - "@id": "bts:IschiorectalFossa" + "@id": "bts:MesenchymalLesion" }, { - "@id": "bts:Ischium" + "@id": "bts:SerousAdenocarcinoma;NOS" }, { - "@id": "bts:IsletofLangerhans" + "@id": "bts:Hepatoblastoma;NOS" }, { - "@id": "bts:IsthmusUteri" + "@id": "bts:Astrocytoma;NOS;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:JawBone" + "@id": "bts:SexCord-GonadalStromalTumor;NOS" }, { - "@id": "bts:JawJoint" + "@id": "bts:AdenoidCysticCarcinoma" }, { - "@id": "bts:Jejunum" + "@id": "bts:EmbryonalTumor" }, { - "@id": "bts:Joint" + "@id": "bts:AcuteMyeloidLeukemia;T(8;21)(Q22;Q22)" }, { - "@id": "bts:Kidney" + "@id": "bts:SpindledAndEpithelioidTumorWithFeaturesOfIntracranialMesenchymalTumor" }, { - "@id": "bts:KneeJoint" + "@id": "bts:Cavernoma" }, { - "@id": "bts:KneeSkin" + "@id": "bts:MalignantTumor;SmallCellType" }, { - "@id": "bts:Labium" + "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSGerminoma" }, { - "@id": "bts:LabiumMajus" + "@id": "bts:LowGradeNeoplasm.FeaturesSuggestiveOfPilocyticAstrocytoma." }, { - "@id": "bts:LabiumMinus" + "@id": "bts:Neoplasm;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:LacrimalGland" + "@id": "bts:SerousCarcinoma;NOS" }, { - "@id": "bts:LacrimalSac" + "@id": "bts:MetastaticSecondaryTumors" }, { - "@id": "bts:LargeIntestine" + "@id": "bts:YolkSacTumor" }, { - "@id": "bts:LaryngealCartilage" + "@id": "bts:MorphologicallyConsistentWithPilocyticAstrocytoma;WHOGrade1" }, { - "@id": "bts:Larynx" + "@id": "bts:NeuroendocrineTumor;NOS" }, { - "@id": "bts:LateralVentricle" + "@id": "bts:MixedGermCellTumor;AcuteMegakaryoblasticLeukemia" }, { - "@id": "bts:LateralWalloftheBladder" + "@id": "bts:JuvenileMyelomonocyticLeukemia" }, { - "@id": "bts:LateralWalloftheNasopharynx" + "@id": "bts:AcuteMyeloidLeukemiaWithT(9;11)(P22;Q23);MLLT3-MLL" }, { - "@id": "bts:LateralWalloftheOropharynx" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;PleomorphicXanthoastrocytoma" }, { - "@id": "bts:LateralWallofthePharynx" + "@id": "bts:PapillaryGlioneuronalTumor;WHOGrade1" }, { - "@id": "bts:LegSkin" + "@id": "bts:CentralNeuroblastoma" }, { - "@id": "bts:Lens" + "@id": "bts:DysembryoplasticNeuroepithelialTumor" }, { - "@id": "bts:LesserCurvatureoftheStomach" + "@id": "bts:MixedAdenocarcinomaAndSquamousCellCarcinoma;Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:Ligament" + "@id": "bts:SubcutaneousPanniculitis-LikeT-CellLymphoma" }, { - "@id": "bts:LingualTonsil" + "@id": "bts:MyofibroblasticTumor" }, { - "@id": "bts:LingulaoftheLung" + "@id": "bts:Nephroblastoma;NOS" }, { - "@id": "bts:Lip" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:Liver" + "@id": "bts:MalignantMelanoma;NOS;MeningealMelanocyticNeoplasms(IncludesMelanoma);Other" }, { - "@id": "bts:LobuleoftheAuricle" + "@id": "bts:Carcinoma;Metastatic;NOS" }, { - "@id": "bts:LowerExtremity" + "@id": "bts:FollicularCarcinoma;MinimallyInvasive" }, { - "@id": "bts:LowerGingiva" + "@id": "bts:Angiomyofibroblastoma" }, { - "@id": "bts:LowerLobeoftheLung" + "@id": "bts:ClassicMedulloblastoma;CNSWHOGrade4" }, { - "@id": "bts:LowerThirdoftheEsophagus" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:Lower-InnerQuadrantoftheBreast" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-MYC" }, { - "@id": "bts:Lower-OuterQuadrantoftheBreast" + "@id": "bts:Astroblastoma" }, { - "@id": "bts:LumbarNerve" + "@id": "bts:MeningothelialMeningioma;Meningioma;Other" }, { - "@id": "bts:LumbosacralPlexus" + "@id": "bts:PoorlyDifferentiatedChordoma" }, { - "@id": "bts:Lung" + "@id": "bts:ChronicMyelogenousLeukemia" }, { - "@id": "bts:LymphNode" + "@id": "bts:PleomorphicSarcoma" }, { - "@id": "bts:LymphNodeofInguinalRegionorLeg" + "@id": "bts:SupratentorialEpendymomaCNSWHOGrade3" }, { - "@id": "bts:Lymphatic" + "@id": "bts:LeydigCellTumor;NOS" }, { - "@id": "bts:MainBronchus" + "@id": "bts:Adenosarcoma" }, { - "@id": "bts:MaleGenitalia" + "@id": "bts:PigmentedDermatofibrosarcomaProtuberans" }, { - "@id": "bts:MalePrepuce" + "@id": "bts:Astrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:MammaryGland" + "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Mandible" + "@id": "bts:Astrocytoma;NOS;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:MasseterMuscle" + "@id": "bts:Myxofibrosarcoma" }, { - "@id": "bts:Maxilla" + "@id": "bts:PrecursorT-CellLymphoblasticLeukemia" }, { - "@id": "bts:MaxillarySinus" + "@id": "bts:Neurocytoma" }, { - "@id": "bts:MeckelDiverticulum" + "@id": "bts:AdrenalCorticalTumor;NOS" }, { - "@id": "bts:MedianNerve" + "@id": "bts:Neoplasm;Malignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:MediastinalLymphNode" + "@id": "bts:AcuteMyeloidLeukemia(Megakaryoblastic)WithT(1;22)(P13;Q13);RBM15-MKL1" }, { - "@id": "bts:Mediastinum" + "@id": "bts:Neoplasm;Malignant;CNSNeuroblastoma;FOXR2-Activated;OtherCNSEmbryonalTumors" }, { - "@id": "bts:MedullaOblongata" + "@id": "bts:Infiltratingductandmucinouscarcinoma" }, { - "@id": "bts:MeibomianGland" + "@id": "bts:AdenocarcinomaInSitu;NOS" }, { - "@id": "bts:Meninges" + "@id": "bts:MucinousAdenocarcinoma" }, { - "@id": "bts:MeniscusLateralis" + "@id": "bts:Retinoblastoma;NOS" }, { - "@id": "bts:MeniscusMedialis" + "@id": "bts:AnaplasticEpendymoma" }, { - "@id": "bts:Mentum" + "@id": "bts:GermCellTumor;Nonseminomatous;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:Mesencephalon" + "@id": "bts:AcuteMonoblasticAndMonocyticLeukemia" }, { - "@id": "bts:MesentericArtery" + "@id": "bts:Hemangioblastoma;CNSWHOGrade1" }, { - "@id": "bts:MesentericLymphNode" + "@id": "bts:AlveolarRhabdomyosarcoma" }, { - "@id": "bts:Mesentery" + "@id": "bts:MedullaryCarcinoma;NOS" }, { - "@id": "bts:MesonephricDuct" + "@id": "bts:AdultGranulosaCellTumorOfTestis" }, { - "@id": "bts:Mesonephros" + "@id": "bts:Medulloblastoma;WHOGrade4" }, { - "@id": "bts:Mesovarium" + "@id": "bts:Craniopharyngioma;Adamantinomatous" }, { - "@id": "bts:MetacarpalBone" + "@id": "bts:HighGradeMalignantPeripheralNerveSheathTumorWithHeterologousRhabdomyoblasticDifferentiation(MalignantTritonTumor)" }, { - "@id": "bts:MetatarsalBone" + "@id": "bts:SpindleCellRhabdomyosaroma" }, { - "@id": "bts:MiddleCranialFossa" + "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant" }, { - "@id": "bts:MiddleEar" + "@id": "bts:EpithelioidSarcoma;NOS" }, { - "@id": "bts:MiddleLobeoftheRightLung" + "@id": "bts:MyoepithelialCarcinoma" }, { - "@id": "bts:MiddleThirdoftheEsophagus" + "@id": "bts:MultipleMyeloma" }, { - "@id": "bts:MinorSalivaryGland" + "@id": "bts:Triple-NegativeBreastCarcinoma" }, { - "@id": "bts:MonsPubis" + "@id": "bts:HepatocellularCarcinoma;NOS;Nephroblastoma;NOS" }, { - "@id": "bts:MucosaoftheLip" + "@id": "bts:Neuroblastoma;SchwannianStromaPoor;PoorlyDifferentiated;LowMKI;FavorableHistology" }, { - "@id": "bts:MucosaoftheLowerLip" + "@id": "bts:SertoliCellTumor;NOS" }, { - "@id": "bts:MucosaoftheUpperLip" + "@id": "bts:OssifyingFibroma" }, { - "@id": "bts:Muscle" + "@id": "bts:PleomorphicLiposarcoma" }, { - "@id": "bts:MusculusLatissimusDorsi" + "@id": "bts:AmelanoticMelanoma" }, { - "@id": "bts:Myocardium" + "@id": "bts:Liposarcoma;NOS" }, { - "@id": "bts:Myometrium" + "@id": "bts:Non-GerminomatousGermCellTumor" }, { - "@id": "bts:NasalBone" + "@id": "bts:LactotrophAdenoma" }, { - "@id": "bts:NasalCartilage" + "@id": "bts:TransientAbnormalMyelopoiesis" }, { - "@id": "bts:NasalCavity" + "@id": "bts:FavorPosteriorFossaEpendymoma;WHOGRADE3" }, { - "@id": "bts:NasalSeptum" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:NasalTurbinate" + "@id": "bts:CarcinomaInSitu;NOS" }, { - "@id": "bts:NasolacrimalDuct" + "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:Nasopharynx" + "@id": "bts:Ependymoma;Anaplastic" }, { - "@id": "bts:NeckSkin" + "@id": "bts:GlialNeoplasm;FavorPilocyticAstrocytoma" }, { - "@id": "bts:Nerve" + "@id": "bts:GastrointestinalStromalTumor;NOS" }, { - "@id": "bts:NervousSystem" + "@id": "bts:SerousCystadenocarcinoma;NOS" }, { - "@id": "bts:Nipple" + "@id": "bts:PapillaryLesionWithAtypical/HighGradeFeatures" }, { - "@id": "bts:Nose" + "@id": "bts:SpinalEpendymoma;WHOGrade2" }, { - "@id": "bts:Nostril" + "@id": "bts:DuctalCarcinomaInSitu;NOS" }, { - "@id": "bts:ObturatorLymphNode" + "@id": "bts:InfiltratingDuctalCarcinoma" }, { - "@id": "bts:ObturatorNerve" + "@id": "bts:MixedTypeRhabdomyosarcoma" }, { - "@id": "bts:OccipitalBone" + "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Mutant" }, { - "@id": "bts:OccipitalLobe" + "@id": "bts:PrecursorB-CellAcuteLymphoblasticLeukemiaWithHyperdiploidy" }, { - "@id": "bts:OccipitalLymphNode" + "@id": "bts:MesenchymalChondrosarcoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:OculomotorMuscle" + "@id": "bts:CribriformCarcinoma;NOS" }, { - "@id": "bts:OculomotorNerve" + "@id": "bts:MyxopapillaryEpendymoma;Anaplastic" }, { - "@id": "bts:OlfactoryNerve" + "@id": "bts:Ependymoma;Anaplastic;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:Omentum" + "@id": "bts:Astrocytoma;IDH-Mutant;WHOGrade2" }, { - "@id": "bts:OpticChiasm" + "@id": "bts:Meningioangiomatosis" }, { - "@id": "bts:OpticNerve" + "@id": "bts:AcuteMyeloidLeukemia;NOS;MyeloproliferativeNeoplasm;Unclassifiable" }, { - "@id": "bts:OpticTract" + "@id": "bts:Endometrioidcarcinoma;NOS" }, { - "@id": "bts:OralCavity" + "@id": "bts:AdenocarcinomaInSitu;Non-Mucinous" }, { - "@id": "bts:Orbit" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group4" }, { - "@id": "bts:Oropharynx" + "@id": "bts:PapillaryCarcinoma;FollicularVariant" }, { - "@id": "bts:OtherSpecifiedPartsofPancreas" + "@id": "bts:MetaplasticCarcinoma;NOS" }, { - "@id": "bts:OuterCanthus" + "@id": "bts:ChoroidPlexusCarcinoma;ChoroidPlexusTumors" }, { - "@id": "bts:Ovary" + "@id": "bts:PoorlyDifferentiatedSertoli-LeydigCellTumorWithHeterologousRhabdomyosarcomatousDifferentiation" }, { - "@id": "bts:Palate" + "@id": "bts:LowGradeGlioma" }, { - "@id": "bts:PalatineTonsil" + "@id": "bts:SexCordStromalTumorNOS" }, { - "@id": "bts:PalmarFascia" + "@id": "bts:StromaPoor;PoorlyDifferentiatedNeuroblastomaWithLowMKI;FavorableHistology" }, { - "@id": "bts:Pancreas" + "@id": "bts:ResidualLowGradeNeuroendocrineTumor(TypicalCarcinoid)" }, { - "@id": "bts:PancreaticDuct" + "@id": "bts:MelanoticNeuroectodermalTumor" }, { - "@id": "bts:PancreaticLymphNode" + "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:ParaaorticLymphNode" + "@id": "bts:Glioma;Malignant;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:Paraganglion" + "@id": "bts:MalignantLymphoma;NOS" }, { - "@id": "bts:Parametrium" + "@id": "bts:MedulloblastomaWHOGrade4" }, { - "@id": "bts:ParanasalSinus" + "@id": "bts:ChoroidPlexusPapillaryTumor" }, { - "@id": "bts:ParasympatheticNervousSystem" + "@id": "bts:FollicularAdenocarcinoma;WellDifferentiated;Neuroblastoma;NOS" }, { - "@id": "bts:ParathyroidGland" + "@id": "bts:NeuroepithelialTumor" }, { - "@id": "bts:ParatrachealLymphNode" + "@id": "bts:MyelodysplasticSyndromeWithMultilineageDysplasia" }, { - "@id": "bts:ParietalBone" + "@id": "bts:PrimaryMediastinal(Thymic)LargeB-CellLymphoma" }, { - "@id": "bts:ParietalLobe" + "@id": "bts:MastCellLeukemia" }, { - "@id": "bts:ParietalPleura" + "@id": "bts:Ganglioneuroblastoma" }, { - "@id": "bts:ParotidDuct" + "@id": "bts:Pheochromocytoma;NOS" }, { - "@id": "bts:ParotidGland" + "@id": "bts:PapillarySerousAdenocarcinoma" }, { - "@id": "bts:ParotidGlandLymphNode" + "@id": "bts:MixedGermCellTumor" }, { - "@id": "bts:Patella" + "@id": "bts:LymphoidLeukemia;NOS" }, { - "@id": "bts:PectoralLymphNode" + "@id": "bts:EpendymomaNOS" }, { - "@id": "bts:PectoralisMajor" + "@id": "bts:SmoothMuscleTumorOfUncertainMalignantPotential" }, { - "@id": "bts:PelvicLymphNode" + "@id": "bts:CombinedSmallCell-LargeCarcinoma" }, { - "@id": "bts:Pelvis" + "@id": "bts:SertoliLeydigCellTumor" }, { - "@id": "bts:Penis" + "@id": "bts:AnaplasticLargeCellLymphoma;ALKPositive" }, { - "@id": "bts:Pericardium" + "@id": "bts:Meningioma;Malignant" }, { - "@id": "bts:Perineum" + "@id": "bts:RhabdoidTumor;NOS" }, { - "@id": "bts:PeripheralNerve" + "@id": "bts:MerkelCellCarcinoma" }, { - "@id": "bts:PeritonealCavity" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Meningioma;Other" }, { - "@id": "bts:Peritoneum" + "@id": "bts:Lymphoma;NOS" }, { - "@id": "bts:PharyngealTonsil" + "@id": "bts:Gangliocytoma;NOS" }, { - "@id": "bts:Pharynx" + "@id": "bts:Glioblastoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:PiaMater" + "@id": "bts:MucinousNon-CysticCarcinoma" }, { - "@id": "bts:PinealGland" + "@id": "bts:MucinousCarcinoma" }, { - "@id": "bts:PituitaryGland" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:Placenta" + "@id": "bts:Ganglioglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:PlantarFascia" + "@id": "bts:HighGradeCarcinosarcoma" }, { - "@id": "bts:PlantarRegion" + "@id": "bts:SubependymalGiantCellAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:Pleura" + "@id": "bts:SquamousCellCarcinoma;Metastatic;NOS" }, { - "@id": "bts:PonsVarolii" + "@id": "bts:MyeloidLeukemiaAssociatedWithDownSyndrome" }, { - "@id": "bts:PoplitealLymphNode" + "@id": "bts:MeningealMelanomatosis" }, { - "@id": "bts:PortalLymphNode" + "@id": "bts:NeuroepithelialTumorWithGlioneuronal-LikeFeatures" }, { - "@id": "bts:PostcricoidRegion" + "@id": "bts:SquamousCellCarcinoma;LargeCell;Nonkeratinizing;NOS" }, { - "@id": "bts:PosteriorCranialFossa" + "@id": "bts:Meningiomatosis;NOS" }, { - "@id": "bts:PosteriorMediastinum" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:PosteriorWalloftheBladder" + "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:PosteriorWalloftheHypopharynx" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:PosteriorWalloftheNasopharynx" + "@id": "bts:CNSEmbryonalTumor;NOS" }, { - "@id": "bts:PosteriorWalloftheOropharynx" + "@id": "bts:FavorAnaplasticEpendymoma" }, { - "@id": "bts:PosteriorWallofthePharynx" + "@id": "bts:DiffuseGlioma" }, { - "@id": "bts:PreauricularLymphNode" + "@id": "bts:AdamantinomatousCraniopharyngioma(CNSWHOGrade1)" }, { - "@id": "bts:ProstateGland" + "@id": "bts:Medulloblastoma;ClassicVariant;WHOGrade4" }, { - "@id": "bts:ProstaticUtricle" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:PsoasMuscle" + "@id": "bts:GlioneuronalTumorWithFocalIncreasedAtypia" }, { - "@id": "bts:PubicBone" + "@id": "bts:HighGradeNeuroepithelialTumor" }, { - "@id": "bts:PubicSymphysis" + "@id": "bts:SquamousCellCarcinoma;SmallCell;Nonkeratinizing" }, { - "@id": "bts:Pulmonary" + "@id": "bts:MixedPhenotypeAcuteLeukemiaWithT(V;11q23);MLLRearranged" }, { - "@id": "bts:PulmonaryHilarLymphNode" + "@id": "bts:AcuteMyeloidLeukemia;MinimalDifferentiation" }, { - "@id": "bts:Putamen" + "@id": "bts:FibrillaryAstrocytoma" }, { - "@id": "bts:Pylorus" + "@id": "bts:Chordoma;NOS" }, { - "@id": "bts:PyriformSinus" + "@id": "bts:UndifferentiatedLeukemia" }, { - "@id": "bts:QuadricepsMuscleoftheThigh" + "@id": "bts:Myofibroma" }, { - "@id": "bts:RadialArtery" + "@id": "bts:Neoplasm;Malignant" }, { - "@id": "bts:RadialNerve" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS;Low-GradeGlioma" }, { - "@id": "bts:RadiusBone" + "@id": "bts:InvasiveDuctalCarcinoma" }, { - "@id": "bts:RathkePouch" + "@id": "bts:SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:RectosigmoidColon" + "@id": "bts:EmbryonalRhabdomyosarcomaWithAnaplasticFeatures" }, { - "@id": "bts:RectosigmoidRegion" + "@id": "bts:High-GradeNeuroepithelialTumor" }, { - "@id": "bts:Rectum" + "@id": "bts:LowGradeGlioneuronalTumor" }, { - "@id": "bts:RectusAbdominis" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:Renal" + "@id": "bts:AcuteMyeloidLeukemiaWithoutMaturation" }, { - "@id": "bts:RenalArtery" + "@id": "bts:AdenocarcinomaWithMixedSubtypes" }, { - "@id": "bts:RenalCalyx" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHyperdiploidy" }, { - "@id": "bts:RenalPelvis" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS" }, { - "@id": "bts:ReticuloendothelialSystem" + "@id": "bts:Hemangiosarcoma" }, { - "@id": "bts:Retina" + "@id": "bts:Paraganglioma;NOS" }, { - "@id": "bts:RetromolarTrigone" + "@id": "bts:Medulloblastoma;Nodular/DesmoplasticWithAnaplastic/LargeCellFeatures;Non-WNT/Non-SHH;WHOGrade4" }, { - "@id": "bts:RetroperitonealLymphNode" + "@id": "bts:SignetRingCellCarcinoma" }, { - "@id": "bts:Retroperitoneum" + "@id": "bts:SpindleCellMelanoma;NOS" }, { - "@id": "bts:RetropharyngealLymphNode" + "@id": "bts:LobularAdenocarcinoma" }, { - "@id": "bts:RoundLigamentoftheUterus" + "@id": "bts:UndiagnosedSpindleCellTumor" }, { - "@id": "bts:SacralBone" + "@id": "bts:PilocyticAstrocytoma;WHOGrade1;KIAA1549-BRAFFusion" }, { - "@id": "bts:SacralLymphNode" + "@id": "bts:Meningioma" }, { - "@id": "bts:SacralNerve" + "@id": "bts:HepatosplenicT-CellLymphoma;PrecursorCellLymphoblasticLeukemia;NOS" }, { - "@id": "bts:SacralPlexus" + "@id": "bts:MesenchymalChondrosarcoma" }, { - "@id": "bts:SalivaryGland" + "@id": "bts:AnaplasticGanglioglioma" }, { - "@id": "bts:ScaleneLymphNode" + "@id": "bts:Osteosarcoma;NOS" }, { - "@id": "bts:Scalp" + "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:Scapula" + "@id": "bts:EpendymomaWHOGrade3" }, { - "@id": "bts:SciaticNerve" + "@id": "bts:LungAdenocarcinoma;NOS" }, { - "@id": "bts:Sclera" + "@id": "bts:LymphoproliferativeDisorder;NOS" }, { - "@id": "bts:Scrotum" + "@id": "bts:AtypicalLymphoidInfiltrate" }, { - "@id": "bts:SellaTurcica" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:SeminalVesicle" + "@id": "bts:GenitalRhabdomyoma" }, { - "@id": "bts:Shoulder" + "@id": "bts:ChondroblasticOsteosarcoma" }, { - "@id": "bts:ShoulderGirdle" + "@id": "bts:Neuroepithelioma;NOS" }, { - "@id": "bts:ShoulderJoint" + "@id": "bts:MalignantEpithelioidAndMyxoidNeoplasm" }, { - "@id": "bts:SigmoidColon" + "@id": "bts:Pancreatoblastoma" }, { - "@id": "bts:SkeletalMuscleTissue" + "@id": "bts:Nephroblastoma(WilmsTumor)" }, { - "@id": "bts:Skin" + "@id": "bts:MalignantGlioma" }, { - "@id": "bts:SkinOfTheAxilla" + "@id": "bts:EwingSarcoma" }, { - "@id": "bts:SkinoftheFace" + "@id": "bts:AtypicalSmoothMuscleNeoplasm" }, { - "@id": "bts:SkinoftheLip" + "@id": "bts:AcuteMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:SkinoftheLowerLimbandHip" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:SkinoftheScalpandNeck" + "@id": "bts:EpithelialTumor;Benign" }, { - "@id": "bts:SkinoftheTrunk" + "@id": "bts:FavorTeratoma" }, { - "@id": "bts:SkinoftheUpperLimbandShoulder" + "@id": "bts:MalignantNeoplasmOfProstate" }, { - "@id": "bts:Skull" + "@id": "bts:Non-ClearCellRenalCellCarcinoma" }, { - "@id": "bts:Skullcap" + "@id": "bts:Meningioma;NOS;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" }, { - "@id": "bts:SmallIntestine" + "@id": "bts:MelanoticSchwannoma;Other" }, { - "@id": "bts:SpermaticCord" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;WNT-Activated" }, { - "@id": "bts:SphenoidBone" + "@id": "bts:CarcinosarcomaNOS" }, { - "@id": "bts:SphenoidSinus" + "@id": "bts:Plasmacytoma;Extramedullary" }, { - "@id": "bts:SphincterofOddi" + "@id": "bts:InfantileFibrosarcoma" }, { - "@id": "bts:SpinalCord" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:SpinalCordDuraMater" + "@id": "bts:CNSPrimativeNeuroectodermalTumor(PNET)" }, { - "@id": "bts:SpinalMeninges" + "@id": "bts:Infiltratingductcarcinoma;NOS" }, { - "@id": "bts:SpinalNerve" + "@id": "bts:PrecursorB-CellLymphoblasticLeukemia" }, { - "@id": "bts:Spleen" + "@id": "bts:SquamousCellCarcinomaInSitu;NOS" }, { - "@id": "bts:SplenicFlexure" + "@id": "bts:AcuteMyeloidLeukemia;T(16;16)(P13;Q11)" }, { - "@id": "bts:SplenicHilarLymphNode" + "@id": "bts:PapillaryTransitionalCellCarcinoma" }, { - "@id": "bts:SternocleidomastoidMuscle" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:SternocostalJoint" + "@id": "bts:Low-GradeGlioneuronal;NeuronalTumor" }, { - "@id": "bts:Stomach" + "@id": "bts:CombinedSmallCell-Adenocarcinoma" }, { - "@id": "bts:SubclavianArtery" + "@id": "bts:HepatocellularCarcinoma;NOS" }, { - "@id": "bts:Subcutis" + "@id": "bts:SpindleCellCarcinoma;NOS" }, { - "@id": "bts:Subglottis" + "@id": "bts:Carcinoma;DiffuseType" }, { - "@id": "bts:SublingualLymphNode" + "@id": "bts:LentiginousMelanocyticNevus" }, { - "@id": "bts:SublingualSalivaryGland" + "@id": "bts:Glioma;Malignant;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" }, { - "@id": "bts:SubmandibularDuct" + "@id": "bts:SolitaryFibrousTumor;NOS" }, { - "@id": "bts:SubmandibularGland" + "@id": "bts:Glioma;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:SubmandibularLymphNode" + "@id": "bts:GranulosaCellTumor;Malignant" }, { - "@id": "bts:SuperiorVenaCava" + "@id": "bts:Ganglioneuroma;MaturingType;FavorableHistology" }, { - "@id": "bts:SuperiorWalloftheNasopharynx" + "@id": "bts:InvasiveLobularCarcinoma" }, { - "@id": "bts:Supraclavicular" + "@id": "bts:Ganglioglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:SupraclavicularLymphNode" + "@id": "bts:BlandMyofibroblasticProliferationWithAssociatedFloridLymphoplasmacyticInflammation" }, { - "@id": "bts:Supraglottis" + "@id": "bts:Medulloblastoma" }, { - "@id": "bts:SuprasellarRegion" + "@id": "bts:Hepatoblastoma" }, { - "@id": "bts:SupratentorialBrain" + "@id": "bts:LowGradeGlial/GlioneuronalTumor" }, { - 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"@id": "bts:BileDuct" + "@id": "bts:Oligodendroglioma" }, { - "@id": "bts:Bladder" + "@id": "bts:MalignantMelanoma;NOS" }, { - "@id": "bts:Blood" + "@id": "bts:MyxopapillaryEpendymoma;Ependymoma" }, { - "@id": "bts:BloodVessel" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Bone" + "@id": "bts:Neoplasm;Malignant;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Bonemarrow" + "@id": "bts:Adenocarcinoma" }, { - "@id": "bts:BoneMarrow" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(9;22)(Q34;Q11.2);BCR-ABL1" }, { - "@id": "bts:BoneMarrowmetastasis" + "@id": "bts:Hemangioendothelioma;Malignant" }, { - "@id": "bts:Bowel" + "@id": "bts:ChoroidPlexusNeoplasm" }, { - "@id": "bts:Brain" + "@id": "bts:Craniopharyngioma;Adamantinomatous;AdamantinomatousCraniopharyngioma" }, { - "@id": "bts:Brainstem" + "@id": "bts:Pinealoblastoma" }, { - "@id": "bts:BrainStem" + "@id": "bts:LargeCellMedulloblastoma;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Breast" + "@id": "bts:SpindleCellSarcoma" }, { - "@id": "bts:BroadLigament" + "@id": "bts:Gliosarcoma" }, { - "@id": "bts:Bronchiole" + "@id": "bts:CentralPrimitiveNeuroectodermalTumor" }, { - "@id": "bts:Bronchus" + "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade3" }, { - "@id": "bts:Brow" + "@id": "bts:Astrocytoma;Benign" }, { - "@id": "bts:BuccalCavity" + "@id": "bts:PleomorphicRhabdomyosarcoma;AdultType" }, { - "@id": "bts:BuccalMucosa" + "@id": "bts:MyeloidSarcoma" }, { - "@id": "bts:Buttock" + "@id": "bts:Glioma;Malignant;Other;OtherLow-GradeB-CellLymphomasOfTheCNS" }, { - "@id": "bts:Calf" + "@id": "bts:Ganglioneuroma" }, { - "@id": "bts:Capillary" + "@id": "bts:Neoplasm;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Cardia" + "@id": "bts:ClearCellRenalCellCarcinoma" }, { - "@id": "bts:Carina" + "@id": "bts:Ependymoma;NOS;AtypicalMeningioma" }, { - "@id": "bts:CarotidArtery" + "@id": "bts:Oligodendroglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:CarotidBody" + "@id": "bts:MalignantPeripheralNerveSheathTumor" }, { - "@id": "bts:Cartilage" + "@id": "bts:Glioma;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" }, { - "@id": "bts:Cecum" + "@id": "bts:Sertoli-LeydigCellTumorOfIntermediateDifferentiation;NOS" }, { - "@id": "bts:Cell-Line" + "@id": "bts:DesmoplasticNodularMedulloblastoma" }, { - "@id": "bts:CentralNervousSystem" + "@id": "bts:PapillaryMicrocarcinoma" }, { - "@id": "bts:Cerebellum" + "@id": "bts:Craniopharyngioma;NOS" }, { - "@id": "bts:CerebralCortex" + "@id": "bts:LowGradeGlialNeoplasm" }, { - "@id": "bts:CerebrospinalFluid" + "@id": "bts:Leiomyosarcoma;NOS" }, { - "@id": "bts:Cerebrum" - }, + "@id": "bts:FollicularAdenocarcinoma;NOS" + } + ], + "sms:displayName": "Individual Primary Diagnosis", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualPrimarySite", + "@type": "rdfs:Class", + "rdfs:comment": "Primary site in the body associated with the primary diagnosis.", + "rdfs:label": "IndividualPrimarySite", + "rdfs:subClassOf": [ { - "@id": "bts:Cervicalnode" + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Abdomen" }, { - "@id": "bts:CervicalSpine" + "@id": "bts:AbdominalWall" }, { - "@id": "bts:Cervix" + "@id": "bts:Acetabulum" }, { - "@id": "bts:Chest" + "@id": "bts:AdjacentOrgan" }, { - "@id": "bts:ChestWall" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:Chin" + "@id": "bts:Anal/Perianal" }, { - "@id": "bts:Clavicle" + "@id": "bts:AnkleJoint" }, { - "@id": "bts:Clitoris" + "@id": "bts:AnteriorSkullBase" }, { - "@id": "bts:Colon" + "@id": "bts:Anus" }, { - "@id": "bts:Colon-MucosaOnly" + "@id": "bts:Appendix" }, { - "@id": "bts:CommonDuct" + "@id": "bts:AsciticFluid" }, { - "@id": "bts:Conjunctiva" + "@id": "bts:Axilla" }, { - "@id": "bts:ConnectiveTissue" + "@id": "bts:AxillaryNodes" }, { - "@id": "bts:Dermal" + "@id": "bts:Bladder" }, { - "@id": "bts:DescendingColon" + "@id": "bts:Bladder/Prostate" }, { - "@id": "bts:Diaphragm" + "@id": "bts:Bone" }, { - "@id": "bts:Distalfemur" + "@id": "bts:BoneFace" }, { - "@id": "bts:Duodenum" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:Ear" + "@id": "bts:BoneorBoneMarrow" }, { - "@id": "bts:EarCanal" + "@id": "bts:Brain" }, { - "@id": "bts:Effusion" + "@id": "bts:Brain/Leptomeninges" }, { - "@id": "bts:Elbow" + "@id": "bts:Breast" }, { - "@id": "bts:EndocrineGland" + "@id": "bts:Bronchus" }, { - "@id": "bts:Epididymis" + "@id": "bts:Buttock" }, { - "@id": "bts:EpiduralSpace" + "@id": "bts:Calcaneum" }, { - "@id": "bts:Esophageal;Distal" + "@id": "bts:CarpalBone" }, { - "@id": "bts:Esophageal;Mid" + "@id": "bts:CaudaEquinaSpinalCord" }, { - "@id": "bts:Esophageal;Proximal" + "@id": "bts:CeliacNodes" }, { - "@id": "bts:EsophagogastricJunction" + "@id": "bts:CentralNervousSystem" }, { - "@id": "bts:Esophagus" - }, - { - "@id": "bts:Esophagus-MucosaOnly" - }, - { - "@id": "bts:Eye" - }, - { - "@id": "bts:FallopianTube" - }, - { - "@id": "bts:FemoralArtery" - }, - { - "@id": "bts:FemoralVein" - }, - { - "@id": "bts:Femur" - }, - { - "@id": "bts:Fibroblasts" + "@id": "bts:Cerebellum" }, { - "@id": "bts:Fibula" + "@id": "bts:CerebrospinalFluid" }, { - "@id": "bts:Finger" + "@id": "bts:CervicalNodes" }, { - "@id": "bts:FloorOfMouth" + "@id": "bts:CervicalSpine" }, { - "@id": "bts:Fluid" + "@id": "bts:CervicalVertebra" }, { - "@id": "bts:Foot" + "@id": "bts:Cervix" }, { - "@id": "bts:Forearm" + "@id": "bts:Cheek" }, { - "@id": "bts:Forehead" + "@id": "bts:Chest" }, { - "@id": "bts:Foreskin" + "@id": "bts:ChestWall" }, { - "@id": "bts:FrontalCortex" + "@id": "bts:Choroid" }, { - "@id": "bts:FrontalLobe" + "@id": "bts:Clavicle" }, { - "@id": "bts:FundusOfStomach" + "@id": "bts:Coccyx" }, { - "@id": "bts:Gallbladder" + "@id": "bts:Colon" }, { - "@id": "bts:Ganglia" + "@id": "bts:Craniospinal" }, { - "@id": "bts:GastroesophagealJunction" + "@id": "bts:Cutaneous" }, { - "@id": "bts:GastrointestinalTract" + "@id": "bts:DeepFacialAreas" }, { - "@id": "bts:Glottis" + "@id": "bts:DeepGray(e.g.BasalgangliaorThalamus)" }, { - "@id": "bts:Groin" + "@id": "bts:Dermis" }, { - "@id": "bts:Gum" + "@id": "bts:DistantLymphNodes" }, { - "@id": "bts:Hand" + "@id": "bts:DorsalSpine" }, { - "@id": "bts:HardPalate" + "@id": "bts:Duodenum" }, { - "@id": "bts:Head&Neck" + "@id": "bts:Ear-LateralSkullBaseandNasopharynx" }, { - "@id": "bts:Head-FaceOrNeck" + "@id": "bts:ElbowJoint" }, { - "@id": "bts:Heart" + "@id": "bts:Epididymis" }, { - "@id": "bts:Hepatic" + "@id": "bts:Epitrochlear" }, { - "@id": "bts:HepaticDuct" + "@id": "bts:EpitrochlearorBrachialNodes" }, { - "@id": "bts:HepaticFlexure" + "@id": "bts:Esophagus" }, { - "@id": "bts:HepaticVein" + "@id": "bts:EthmoidBone" }, { - "@id": "bts:Hip" + "@id": "bts:Eyelid" }, { - "@id": "bts:Hippocampus" + "@id": "bts:Face" }, { - "@id": "bts:Humerus" + "@id": "bts:FallopianTube" }, { - "@id": "bts:Hypopharynx" + "@id": "bts:FemaleReproductiveSystemPart" }, { - "@id": "bts:Ileum" + "@id": "bts:Femur" }, { - "@id": "bts:Ilium" + "@id": "bts:Fibula" }, { - "@id": "bts:IndexFinger" + "@id": "bts:FibulaHead" }, { - "@id": "bts:Ischium" + "@id": "bts:Finger" }, { - "@id": "bts:IsletCells" + "@id": "bts:Foot" }, { - "@id": "bts:Jaw" + "@id": "bts:FootBone" }, { - "@id": "bts:Jejunum" + "@id": "bts:FootJoint" }, { - "@id": "bts:Joint" + "@id": "bts:FootPhalanges" }, { - "@id": "bts:Kidney" + "@id": "bts:Forearm" }, { - "@id": "bts:Knee" + "@id": "bts:FourthVentricle" }, { - "@id": "bts:L.DistalFemur" + "@id": "bts:FrontalBone" }, { - "@id": "bts:L.Femur" + "@id": "bts:FrontalCortex" }, { - "@id": "bts:L.Kidney" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:L.Occipitalmass" + "@id": "bts:Gallbladder" }, { - "@id": "bts:L.ProximalTibia" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:LacrimalGland" + "@id": "bts:Hand" }, { - "@id": "bts:LargeBowel" + "@id": "bts:HandBone" }, { - "@id": "bts:Laryngopharynx" + "@id": "bts:HandJoint" }, { - "@id": "bts:Larynx" + "@id": "bts:HandPhalanges" }, { - "@id": "bts:LeftBonemarrow" + "@id": "bts:Head" }, { - "@id": "bts:Leftthigh" + "@id": "bts:HeadandNeck" }, { - "@id": "bts:Leg" + "@id": "bts:Heart" }, { - "@id": "bts:Leptomeninges" + "@id": "bts:Hip" }, { - "@id": "bts:Ligament" + "@id": "bts:Hip/InguinalRegion" }, { - "@id": "bts:Lip" + "@id": "bts:Humerus" }, { - "@id": "bts:Liver" + "@id": "bts:Hypodermis" }, { - "@id": "bts:Livermetastasis" + "@id": "bts:Hypopharynx" }, { - "@id": "bts:LumbarSpine" + "@id": "bts:IliacCrest" }, { - "@id": "bts:Lung" + "@id": "bts:Ilium" }, { - "@id": "bts:Lungmass" + "@id": "bts:InferiorLimb" }, { - "@id": "bts:Lungmet" + "@id": "bts:InfraclavicularNodes" }, { - "@id": "bts:Lungmetastasis" + "@id": "bts:Inguinal" }, { - "@id": "bts:Lung/pleura" + "@id": "bts:InguinalorFemoralNodes" }, { - "@id": "bts:LymphNode" + "@id": "bts:Intra-abdominal" }, { - "@id": "bts:LymphNodemet" + "@id": "bts:Intraperitoneal" }, { - "@id": "bts:LymphNode(s)Axilla" + "@id": "bts:Intraspinal" }, { - "@id": "bts:LymphNode(s)Cervical" + "@id": "bts:Intrathoracic" }, { - "@id": "bts:LymphNode(s)Distant" + "@id": "bts:Ischium" }, { - "@id": "bts:LymphNode(s)Epitrochlear" + "@id": "bts:Kidney" }, { - "@id": "bts:LymphNode(s)Femoral" + "@id": "bts:KneeJoint" }, { - "@id": "bts:LymphNode(s)Hilar" + "@id": "bts:LacrimalBone" }, { - "@id": "bts:LymphNode(s)Iliac-Common" + "@id": "bts:LargeVessels" }, { - "@id": "bts:LymphNode(s)Iliac-External" + "@id": "bts:Larynx" }, { - "@id": "bts:LymphNode(s)Inguinal" + "@id": "bts:Larynx-Trachea" }, { - "@id": "bts:LymphNode(s)InternalMammary" + "@id": "bts:LateralVentricle" }, { - "@id": "bts:LymphNode(s)Mammary" + "@id": "bts:Leg" }, { - "@id": "bts:LymphNode(s)Mesenteric" + "@id": "bts:Leptomeningeal" }, { - "@id": "bts:LymphNode(s)Occipital" + "@id": "bts:Liver" }, { - "@id": "bts:LymphNode(s)Paraaortic" + "@id": "bts:Liver/BiliaryTract" }, { - "@id": "bts:LymphNode(s)Parotid" + "@id": "bts:LowerArm" }, { - "@id": "bts:LymphNode(s)Pelvic" + "@id": "bts:LowerExtremity" }, { - "@id": "bts:LymphNode(s)Popliteal" + "@id": "bts:LowerLeg" }, { - "@id": "bts:LymphNode(s)Regional" + "@id": "bts:LumbarSpinalCord" }, { - "@id": "bts:LymphNode(s)Retroperitoneal" + "@id": "bts:LumbarSpine" }, { - "@id": "bts:LymphNode(s)Scalene" + "@id": "bts:LumbarVertebra" }, { - "@id": "bts:LymphNode(s)Splenic" + "@id": "bts:Lung" }, { - "@id": "bts:LymphNode(s)Subclavicular" + "@id": "bts:LymphNode" }, { - "@id": "bts:LymphNode(s)Submandibular" + "@id": "bts:LymphaticBasin" }, { - "@id": "bts:LymphNode(s)Supraclavicular" + "@id": "bts:Mandible" }, { - "@id": "bts:LymphNodes(s)Mediastinal" + "@id": "bts:Maxilla" }, { - "@id": "bts:Mandible" + "@id": "bts:Mediastinum" }, { - "@id": "bts:Maxilla" + "@id": "bts:Medulla" }, { - "@id": "bts:MediastinalSoftTissue" + "@id": "bts:Meninges" }, { - "@id": "bts:Mediastinum" + "@id": "bts:MesentericNodes" }, { - "@id": "bts:Mesentery" + "@id": "bts:Metacarpals" }, { - "@id": "bts:Mesothelium" + "@id": "bts:Metatarsals" }, { - "@id": "bts:MiddleFinger" + "@id": "bts:Midbrain" }, { - "@id": "bts:Mitochondria" + "@id": "bts:MiddleEar" }, { - "@id": "bts:Muscle" + "@id": "bts:NasalBone" }, { - "@id": "bts:Nails" + "@id": "bts:NasalCavity" }, { - "@id": "bts:NasalCavity" + "@id": "bts:NasalCavityandParanasalSinuses" }, { - "@id": "bts:NasalSoftTissue" + "@id": "bts:NasalSeptum" }, { "@id": "bts:Nasopharynx" @@ -267488,37 +273621,37 @@ "@id": "bts:Neck" }, { - "@id": "bts:Nerve" + "@id": "bts:NotReported" }, { - "@id": "bts:Nerve(s)Cranial" + "@id": "bts:OccipitalBone" }, { - "@id": "bts:NotAllowedToCollect" + "@id": "bts:OccipitalCortex" }, { - "@id": "bts:Notreported" + "@id": "bts:OccipitalLobe" }, { - "@id": "bts:NotReported" + "@id": "bts:OculusDexter(RightEye)" }, { - "@id": "bts:Notspecifiedindata" + "@id": "bts:OculusSinister(LeftEye)" }, { - "@id": "bts:OccipitalCortex" + "@id": "bts:OculusUterque(BothEyes)" }, { - "@id": "bts:OcularOrbits" + "@id": "bts:Omentum" }, { - "@id": "bts:Omentum" + "@id": "bts:OpticChiasm" }, { - "@id": "bts:OralCavity" + "@id": "bts:OpticNerve" }, { - "@id": "bts:OralCavity-MucosaOnly" + "@id": "bts:OralCavity" }, { "@id": "bts:Orbit" @@ -267526,32 +273659,26 @@ { "@id": "bts:Oropharynx" }, - { - "@id": "bts:Osfrontalis" - }, { "@id": "bts:Other" }, { "@id": "bts:Ovary" }, - { - "@id": "bts:Palate" - }, { "@id": "bts:Pancreas" }, { - "@id": "bts:ParacavalLymphNodemetastasis" + "@id": "bts:Para-AorticLymphNodes" }, { - "@id": "bts:ParanasalSinuses" + "@id": "bts:ParanasalSinus" }, { - "@id": "bts:ParaspinalGanglion" + "@id": "bts:ParapharyngealArea" }, { - "@id": "bts:Paraspinalmass" + "@id": "bts:Paraspinal" }, { "@id": "bts:Paratesticular" @@ -267560,121 +273687,70 @@ "@id": "bts:Parathyroid" }, { - "@id": "bts:ParotidGland" + "@id": "bts:ParietalBone" }, { - "@id": "bts:Patella" + "@id": "bts:ParietalCortex" }, { - "@id": "bts:Pelvis" + "@id": "bts:ParietalLobe" }, { - "@id": "bts:Penis" + "@id": "bts:Parotid" }, { - "@id": "bts:Pericardium" + "@id": "bts:Patella" }, { - "@id": "bts:Perineum" + "@id": "bts:PectoralNodes" }, { - "@id": "bts:PeriorbitalSoftTissue" + "@id": "bts:Pelvis" }, { - "@id": "bts:Peripheralblood" + "@id": "bts:Pelvis/Sacrum" }, { - "@id": "bts:PeritonealCavity" + "@id": "bts:Penis" }, { - "@id": "bts:Peritoneum" + "@id": "bts:Perineum" }, { - "@id": "bts:Pharynx" + "@id": "bts:Peritoneum" }, { "@id": "bts:Pineal" }, - { - "@id": "bts:PinealGland" - }, - { - "@id": "bts:PituitaryGland" - }, - { - "@id": "bts:Placenta" - }, { "@id": "bts:Pleura" }, { - "@id": "bts:Pleuraleffusionmet" - }, - { - "@id": "bts:PoplitealFossa" + "@id": "bts:PleuraThymus" }, { - "@id": "bts:Postmortemblood" + "@id": "bts:PleuralEffusion" }, { - "@id": "bts:Postmortemliver" + "@id": "bts:PonsVarolii" }, { - "@id": "bts:Postmortemlivertumor" + "@id": "bts:PoplitealNodes" }, { - "@id": "bts:Posteriormediastilmass(mediastinum)" + "@id": "bts:Pre-auricularNodes" }, { "@id": "bts:Prostate" }, { - "@id": "bts:Pylorus" - }, - { - "@id": "bts:R.Breastmetastasis" - }, - { - "@id": "bts:R.Buttock" - }, - { - "@id": "bts:R.DistalFemur" - }, - { - "@id": "bts:R.femur/rib/verebra" - }, - { - "@id": "bts:R.Humerus" - }, - { - "@id": "bts:R.Kidney" - }, - { - "@id": "bts:R.Neckmass" - }, - { - "@id": "bts:R.ParietalLobe" - }, - { - "@id": "bts:R.ProximalUlna" - }, - { - "@id": "bts:R.SylvianFissure" - }, - { - "@id": "bts:RectosigmoidJunction" + "@id": "bts:RadiusBone" }, { "@id": "bts:Rectum" }, { - "@id": "bts:Retina" - }, - { - "@id": "bts:Retro-OrbitalRegion" - }, - { - "@id": "bts:Retroperitonealmass" + "@id": "bts:RegionalLymphNodes" }, { "@id": "bts:Retroperitoneum" @@ -267683,13 +273759,7 @@ "@id": "bts:Rib" }, { - "@id": "bts:RightBonemarrow" - }, - { - "@id": "bts:RingFinger" - }, - { - "@id": "bts:RoundLigament" + "@id": "bts:Sacrococcygeal" }, { "@id": "bts:Sacrum" @@ -267704,28 +273774,19 @@ "@id": "bts:Scapula" }, { - "@id": "bts:SciaticNerve" - }, - { - "@id": "bts:Scrotum" + "@id": "bts:Scapula/Clavicle" }, { - "@id": "bts:SeminalVesicle" + "@id": "bts:Schlemm'sCanal" }, { "@id": "bts:Shoulder" }, { - "@id": "bts:SigmoidColon" - }, - { - "@id": "bts:Sinus" - }, - { - "@id": "bts:Sinus(es)" + "@id": "bts:ShoulderGirdle" }, { - "@id": "bts:SkeletalMuscle" + "@id": "bts:ShoulderJoint" }, { "@id": "bts:Skin" @@ -267734,79 +273795,88 @@ "@id": "bts:Skull" }, { - "@id": "bts:SmallBowel" + "@id": "bts:SkullandFaceBone" }, { - "@id": "bts:SmallBowel-MucosaOnly" + "@id": "bts:SmallIntestine" }, { - "@id": "bts:SmallFinger" + "@id": "bts:SoftTissue" }, { - "@id": "bts:SoftTissue" + "@id": "bts:SoftTissue;NOS" }, { - "@id": "bts:SpinalColumn" + "@id": "bts:SphenoidBone" }, { "@id": "bts:SpinalCord" }, + { + "@id": "bts:Spine" + }, { "@id": "bts:Spleen" }, { - "@id": "bts:SplenicFlexure" + "@id": "bts:SplenicHilarNodes" }, { "@id": "bts:Sternum" }, + { + "@id": "bts:Sternum/ChestWall" + }, { "@id": "bts:Stomach" }, { - "@id": "bts:Stomach-MucosaOnly" + "@id": "bts:SuperiorLimbandShoulder" }, { - "@id": "bts:SubcutaneousTissue" + "@id": "bts:SuperiorMaxilla" }, { - "@id": "bts:Subglottis" + "@id": "bts:SupraclavicularNodes" }, { - "@id": "bts:SublingualGland" + "@id": "bts:SuprasellarPituitary" }, { - "@id": "bts:SubmandibularGland" + "@id": "bts:Talus" }, { - "@id": "bts:Supraglottis" + "@id": "bts:TarsalBone" }, { - "@id": "bts:Synovium" + "@id": "bts:TemporalBone" }, { "@id": "bts:TemporalCortex" }, { - "@id": "bts:Tendon" + "@id": "bts:TemporalLobe" }, { "@id": "bts:Testis" }, + { + "@id": "bts:Thalamus" + }, { "@id": "bts:Thigh" }, { - "@id": "bts:ThoracicSpine" + "@id": "bts:ThirdVentricle" }, { - "@id": "bts:Thorax" + "@id": "bts:ThoracicSpinalCord" }, { - "@id": "bts:Throat" + "@id": "bts:ThoracicVertebra" }, { - "@id": "bts:Thumb" + "@id": "bts:Thorax" }, { "@id": "bts:Thymus" @@ -267815,92 +273885,84 @@ "@id": "bts:Thyroid" }, { - "@id": "bts:Tibia" + "@id": "bts:ThyroidandParathyroid" }, { - "@id": "bts:Tongue" + "@id": "bts:Tibia" }, { - "@id": "bts:Tonsil" + "@id": "bts:Toe" }, { - "@id": "bts:Tonsil(Pharyngeal)" + "@id": "bts:Tonsil" }, { - "@id": "bts:Trachea/MajorBronchi" + "@id": "bts:TrabecularMeshwork" }, { - "@id": "bts:TransverseColon" + "@id": "bts:Trachea" }, { "@id": "bts:Trunk" }, { - "@id": "bts:Tumor" - }, - { - "@id": "bts:UmbilicalCord" + "@id": "bts:Trunk-Paraspinal" }, { - "@id": "bts:Unknowm" + "@id": "bts:Ulna" }, { "@id": "bts:Unknown" }, { - "@id": "bts:Ureter" - }, - { - "@id": "bts:Urethra" + "@id": "bts:UpperAirway" }, { - "@id": "bts:UrinaryTract" + "@id": "bts:UpperArm" }, { - "@id": "bts:Uterus" + "@id": "bts:UpperExtremity" }, { - "@id": "bts:Uvula" + "@id": "bts:Ureter" }, { - "@id": "bts:Vagina" + "@id": "bts:Urogenital" }, { - "@id": "bts:VasDeferens" + "@id": "bts:Uterus" }, { - "@id": "bts:Vein" + "@id": "bts:Vagina" }, { - "@id": "bts:Venous" + "@id": "bts:Vasculo-Nervous" }, { - "@id": "bts:Ventricularmass" + "@id": "bts:Viscera" }, { - "@id": "bts:Vertebra" + "@id": "bts:Vulva" }, { - "@id": "bts:Vulva" + "@id": "bts:Waldeyer'sRing" }, { - "@id": "bts:WhiteBloodCells" + "@id": "bts:WristJoint" }, { - "@id": "bts:Wrist" + "@id": "bts:ZygomaticBone" } ], - "sms:displayName": "Individual Known Metastasis Sites", + "sms:displayName": "Individual Primary Site", "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { - "@id": "bts:IndividualMetastasisStage", + "@id": "bts:IndividualPrimaryTumorStage", "@type": "rdfs:Class", - "rdfs:comment": "Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.", - "rdfs:label": "IndividualMetastasisStage", + "rdfs:comment": "Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.", + "rdfs:label": "IndividualPrimaryTumorStage", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -267911,151 +273973,126 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:M0" - }, - { - "@id": "bts:M1" + "@id": "bts:NotReported" }, { - "@id": "bts:M1a" + "@id": "bts:T0" }, { - "@id": "bts:M1b" + "@id": "bts:T1" }, { - "@id": "bts:M1c" + "@id": "bts:T1a" }, { - "@id": "bts:MX" + "@id": "bts:T1a1" }, { - "@id": "bts:CM0(i+)" + "@id": "bts:T1a2" }, { - "@id": "bts:Unknown" + "@id": "bts:T1b" }, { - "@id": "bts:NotReported" - } - ], - "sms:displayName": "Individual Metastasis Stage", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IndividualTreatmentType", - "@type": "rdfs:Class", - "rdfs:comment": "Text term that describes the kind of treatment administered.", - "rdfs:label": "IndividualTreatmentType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:3-DimensionalConformalRadiationTherapy" + "@id": "bts:T1b1" }, { - "@id": "bts:AllogeneicHematopoieticStemCellTransplantation" + "@id": "bts:T1b2" }, { - "@id": "bts:AutologousStemCellTransplantation" + "@id": "bts:T1c" }, { - "@id": "bts:Brachytherapy" + "@id": "bts:T1mi" }, { - "@id": "bts:CellularTherapy" + "@id": "bts:T2" }, { - "@id": "bts:Chemotherapy" + "@id": "bts:T2a" }, { - "@id": "bts:ConcurrentChemoradiation" + "@id": "bts:T2a1" }, { - "@id": "bts:ConventionalRadiotherapy" + "@id": "bts:T2a2" }, { - "@id": "bts:ElectronBeamRadiationTherapy" + "@id": "bts:T2b" }, { - "@id": "bts:ExternalBeamRadiationTherapy" + "@id": "bts:T2c" }, { - "@id": "bts:High-DoseRateBrachytherapy" + "@id": "bts:T2d" }, { - "@id": "bts:HormoneTherapy" + "@id": "bts:T3" }, { - "@id": "bts:Immunotherapy" + "@id": "bts:T3a" }, { - "@id": "bts:Intensity-ModulatedRadiationTherapy" + "@id": "bts:T3b" }, { - "@id": "bts:Low-DoseRateBrachytherapy" + "@id": "bts:T3c" }, { - "@id": "bts:NotReported" + "@id": "bts:T3d" }, { - "@id": "bts:OrganTransplantation" + "@id": "bts:T4" }, { - "@id": "bts:PalliativeCare" + "@id": "bts:T4a" }, { - "@id": "bts:Pharmacotherapy" + "@id": "bts:T4b" }, { - "@id": "bts:PhotonBeamRadiationTherapy" + "@id": "bts:T4c" }, { - "@id": "bts:ProtonBeamRadiationTherapy" + "@id": "bts:T4d" }, { - "@id": "bts:RadiationTherapy" + "@id": "bts:T4e" }, { - "@id": "bts:RadiofrequencyAblation" + "@id": "bts:T5" }, { - "@id": "bts:Radiopharmaceutical" + "@id": "bts:Ta" }, { - "@id": "bts:StemCellTransplant" + "@id": "bts:Tis" }, { - "@id": "bts:StereotacticBodyRadiationTherapy" + "@id": "bts:Tis(DCIS)" }, { - "@id": "bts:StereotacticRadiosurgery" + "@id": "bts:Tis(LCIS)" }, { - "@id": "bts:SurgicalProcedure" + "@id": "bts:Tis(Paget's)" }, { - "@id": "bts:TargetedMolecularTherapy" + "@id": "bts:TX" }, { "@id": "bts:Unknown" } ], - "sms:displayName": "Individual Treatment Type", + "sms:displayName": "Individual Primary Tumor Stage", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:IndividualTherapeuticAgent", + "@id": "bts:IndividualSiteofOrigin", "@type": "rdfs:Class", - "rdfs:comment": "Text identification of the individual agent(s) used as part of a treatment regimen.", - "rdfs:label": "IndividualTherapeuticAgent", + "rdfs:comment": "The text term used to describe the anatomic site of origin, of the patient's malignant disease.", + "rdfs:label": "IndividualSiteofOrigin", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -268066,18838 +274103,16891 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:10-Deacetyltaxol" + "@id": "bts:AbdominalAorta" }, { - "@id": "bts:11CTopotecan" + "@id": "bts:AbdominalEsophagus" }, { - "@id": "bts:11D10AluGelAnti-IdiotypeMonoclonalAntibody" + "@id": "bts:AbdominalMuscle" }, { - "@id": "bts:12-Allyldeoxoartemisinin" + "@id": "bts:AbdominalSkin" }, { - "@id": "bts:13-Deoxydoxorubicin" + "@id": "bts:AbdominalWall" }, { - "@id": "bts:14CBMS-275183" + "@id": "bts:AbducensNerve" }, { - "@id": "bts:17beta-HydroxysteroidDehydrogenaseType5InhibitorASP9521" + "@id": "bts:AccessoryNerve" }, { - "@id": "bts:2-Deoxy-D-glucose" + "@id": "bts:Acetabulum" }, { - "@id": "bts:2-Ethylhydrazide" + "@id": "bts:AcromioclavicularJoint" }, { - "@id": "bts:2-Fluoroadenine" + "@id": "bts:AdiposeTissue" }, { - "@id": "bts:2-Fluorofucose-containingSGN-2FF" + "@id": "bts:AdrenalCortex" }, { - "@id": "bts:2-Hydroxyestradiol" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:2-Hydroxyestrone" + "@id": "bts:AdrenalMedulla" }, { - "@id": "bts:2-HydroxyflutamideDepot" + "@id": "bts:AmpullaofVater" }, { - "@id": "bts:2-HydroxyoleicAcid" + "@id": "bts:AnalCanal" }, { - "@id": "bts:2-Methoxyestradiol" + "@id": "bts:AnalTransitionalZone" }, { - "@id": "bts:2-MethoxyestradiolNanocrystalColloidalDispersion" + "@id": "bts:AnkleJoint" }, { - "@id": "bts:2-Methoxyestrone" + "@id": "bts:AnkleSkin" }, { - "@id": "bts:2-O;3-ODesulfatedHeparin" + "@id": "bts:AntecubitalRegion" }, { - "@id": "bts:2;6-Diaminopurine" + "@id": "bts:AnteriorCranialFossa" }, { - "@id": "bts:2;6-Dimethoxyquinone" + "@id": "bts:AnteriorMediastinum" }, { - "@id": "bts:2'-F-ara-deoxyuridine" + "@id": "bts:AnteriorSurfaceoftheEpiglottis" }, { - "@id": "bts:3'-C-ethynylcytidine" + "@id": "bts:AnteriorWalloftheBladder" }, { - "@id": "bts:3'-dAPhosphoramidateNUC-7738" + "@id": "bts:AnteriorWalloftheNasopharynx" }, { - "@id": "bts:4-Nitroestrone3-MethylEther" + "@id": "bts:AntrumPylori" }, { - "@id": "bts:4-Thio-2-deoxycytidine" + "@id": "bts:Anus" }, { - "@id": "bts:4'-Iodo-4'-Deoxydoxorubicin" + "@id": "bts:Aorta" }, { - "@id": "bts:5-Aza-4'-thio-2'-deoxycytidine" + "@id": "bts:AortocavalLymphNode" }, { - "@id": "bts:5-Fluoro-2-Deoxycytidine" + "@id": "bts:ApexoftheTongue" }, { - "@id": "bts:6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatasesIsoform3InhibitorACT-PFK-158" + "@id": "bts:Aponeurosis" }, { - "@id": "bts:7-Cyanoquinocarcinol" + "@id": "bts:AppendageoftheUterus" }, { - "@id": "bts:7-Ethyl-10-Hydroxycamptothecin" + "@id": "bts:Appendix" }, { - "@id": "bts:7-Hydroxystaurosporine" + "@id": "bts:Areola" }, { - "@id": "bts:8-Azaguanine" + "@id": "bts:ArmSkin" }, { - "@id": "bts:9-Ethyl6-Mercaptopurine" + "@id": "bts:Artery" }, { - "@id": "bts:9H-Purine-6Thio-98D" + "@id": "bts:ArticularCartilage" }, { - "@id": "bts:A2AReceptorAntagonistEOS100850" + "@id": "bts:AryepiglotticFold" }, { - "@id": "bts:Abagovomab" + "@id": "bts:ArytenoidCartilage" }, { - "@id": "bts:Abarelix" + "@id": "bts:AscendingColon" }, { - "@id": "bts:Abemaciclib" + "@id": "bts:AutonomicNervousSystem" }, { - "@id": "bts:AbemaciclibMesylate" + "@id": "bts:Axilla" }, { - "@id": "bts:Abexinostat" + "@id": "bts:AxillaryArtery" }, { - "@id": "bts:AbexinostatTosylate" + "@id": "bts:AxillaryLymphNode" }, { - "@id": "bts:Abiraterone" + "@id": "bts:AxillaryTailoftheBreast" }, { - "@id": "bts:AbirateroneAcetate" + "@id": "bts:Back" }, { - "@id": "bts:Abituzumab" + "@id": "bts:BartholinGland" }, { - "@id": "bts:AcaiBerryJuice" + "@id": "bts:BasalGanglia" }, { - "@id": "bts:Acalabrutinib" + "@id": "bts:BaseoftheTongue" }, { - "@id": "bts:Acalisib" + "@id": "bts:Biceps" }, { - "@id": "bts:Aceglatone" + "@id": "bts:BicepsFemoris" }, { - "@id": "bts:Acetylcysteine" + "@id": "bts:BileCanaliculus" }, { - "@id": "bts:Acitretin" + "@id": "bts:BileDuct" }, { - "@id": "bts:Acivicin" + "@id": "bts:BiliaryTract" }, { - "@id": "bts:AclacinomycinB" + "@id": "bts:Bladder" }, { - "@id": "bts:Aclarubicin" + "@id": "bts:BladderNeck" }, { - "@id": "bts:Acodazole" + "@id": "bts:BladderTrigone" }, { - "@id": "bts:AcodazoleHydrochloride" + "@id": "bts:Blood" }, { - "@id": "bts:AcolbifeneHydrochloride" + "@id": "bts:BloodVessel" }, { - "@id": "bts:Acridine" + "@id": "bts:BodyofStomach" }, { - "@id": "bts:AcridineCarboxamide" + "@id": "bts:BodyofthePancreas" }, { - "@id": "bts:Acronine" + "@id": "bts:BodyofthePenis" }, { - "@id": "bts:ActiniumAc225Lintuzumab" + "@id": "bts:Bone" }, { - "@id": "bts:ActiniumAc225-FPI-1434" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:ActiniumAc-225Anti-PSMAMonoclonalAntibodyJ591" + "@id": "bts:BoneoftheExtremity" }, { - "@id": "bts:ActinomycinC2" + "@id": "bts:BrachialLymphNode" }, { - "@id": "bts:ActinomycinC3" + "@id": "bts:BrachialPlexus" }, { - "@id": "bts:ActinomycinF1" + "@id": "bts:Brachialis" }, { - "@id": "bts:ActivinType2BReceptorFcFusionProteinSTM434" + "@id": "bts:Brain" }, { - "@id": "bts:AcyclicNucleosidePhosphonateProdrugABI-1968" + "@id": "bts:BrainDuraMater" }, { - "@id": "bts:Ad-RTS-hIL-12" + "@id": "bts:BrainStem" }, { - "@id": "bts:AdagloxadSimolenin" + "@id": "bts:BrainVentricle" }, { - "@id": "bts:Adavosertib" + "@id": "bts:BranchialCleftRemnant" }, { - "@id": "bts:Adecatumumab" + "@id": "bts:Breast" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistAZD4635" + "@id": "bts:BroadLigament" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistCS3005" + "@id": "bts:BronchialLymphNode" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistNIR178" + "@id": "bts:Bronchiole" }, { - "@id": "bts:AdenosineA2AReceptorAntagonist/Phosphodiesterase10APBF-999" + "@id": "bts:Bronchus" }, { - "@id": "bts:AdenosineA2A/A2BReceptorAntagonistAB928" + "@id": "bts:BuccalMucosa" }, { - "@id": "bts:AdenosineA2BReceptorAntagonistPBF-1129" + "@id": "bts:Buttock" }, { - "@id": "bts:Adenovector-transducedAP1903-inducibleMyD88/CD40-expressingAutologousPSMA-specificProstateCancerVaccineBPX-201" + "@id": "bts:C1Vertebra" }, { - "@id": "bts:AdenoviralBrachyuryVaccineETBX-051" + "@id": "bts:C2Vertebra" }, { - "@id": "bts:AdenoviralCancerVaccinePF-06936308" + "@id": "bts:Calcaneum" }, { - "@id": "bts:AdenoviralMUC1VaccineETBX-061" + "@id": "bts:Calf" }, { - "@id": "bts:AdenoviralPSAVaccineETBX-071" + "@id": "bts:CardiacAtrium" }, { - "@id": "bts:AdenoviralTransducedhIL-12-expressingAutologousDendriticCellsINXN-3001PlusActivatorLigandINXN-1001" + "@id": "bts:CardiacVentricle" }, { - "@id": "bts:AdenoviralTumor-specificNeoantigenPrimingVaccineGAd-209-FSP" + "@id": "bts:Carina" }, { - "@id": "bts:AdenoviralTumor-specificNeoantigenPrimingVaccineGRT-C901" + "@id": "bts:CarotidArtery" }, { - "@id": "bts:Adenovirus5/F35-HumanGuanylylCyclaseC-PADRE" + "@id": "bts:CarotidBody" }, { - "@id": "bts:AdenovirusSerotype26-expressingHPV16VaccineJNJ-63682918" + "@id": "bts:CarpalBone" }, { - "@id": "bts:AdenovirusSerotype26-expressingHPV18VaccineJNJ-63682931" + "@id": "bts:CarpalRegion" }, { - "@id": "bts:Adenovirus-expressingTLR5/TLR5AgonistNanoformulationM-VM3" + "@id": "bts:Cartilage" }, { - "@id": "bts:Adenovirus-mediatedHumanInterleukin-12INXN-2001PlusActivatorLigandINXN-1001" + "@id": "bts:CaudaEquina" }, { - "@id": "bts:Aderbasib" + "@id": "bts:Cecum" }, { - "@id": "bts:ADH-1" + "@id": "bts:CeliacArtery" }, { - "@id": "bts:AE37Peptide/GM-CSFVaccine" + "@id": "bts:CeliacLymphNode" }, { - "@id": "bts:AEE788" + "@id": "bts:CentralNervousSystem" }, { - "@id": "bts:AerosolGemcitabine" + "@id": "bts:CentralPortionoftheBreast" }, { - "@id": "bts:AerosolizedAldesleukin" + "@id": "bts:CerebellopontineAngle" }, { - "@id": "bts:AerosolizedLiposomalRubitecan" + "@id": "bts:Cerebellum" }, { - "@id": "bts:Afatinib" + "@id": "bts:CerebralCortex" }, { - "@id": "bts:AfatinibDimaleate" + "@id": "bts:CerebralHemisphere" }, { - "@id": "bts:Afimoxifene" + "@id": "bts:CerebralMeninges" }, { - "@id": "bts:Afuresertib" + "@id": "bts:CerebralPeduncle" }, { - "@id": "bts:AgatolimodSodium" + "@id": "bts:CerebralWhiteMatter" }, { - "@id": "bts:Agerafenib" + "@id": "bts:CeruminousGland" }, { - "@id": "bts:AglatimageneBesadenovec" + "@id": "bts:CervicalEsophagus" }, { - "@id": "bts:AgonisticAnti-CD40MonoclonalAntibodyADC-1013" + "@id": "bts:CervicalGland" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyINCAGN01949" + "@id": "bts:CervicalLymphNode" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyMEDI6469" + "@id": "bts:CervixUteri" }, { - "@id": "bts:AKR1C3-activatedProdrugOBI-3424" + "@id": "bts:Cheek" }, { - "@id": "bts:AKT1/2InhibitorBAY1125976" + "@id": "bts:Chest" }, { - "@id": "bts:AKTInhibitorARQ092" + "@id": "bts:ChestWall" }, { - "@id": "bts:AktInhibitorLY2780301" + "@id": "bts:Choroid" }, { - "@id": "bts:AktInhibitorMK2206" + "@id": "bts:ChoroidPlexus" }, { - "@id": "bts:AktInhibitorSR13668" + "@id": "bts:ChoroidPlexusoftheFourthVentricle" }, { - "@id": "bts:Akt/ERKInhibitorONC201" + "@id": "bts:ChoroidPlexusoftheLateralVentricle" }, { - "@id": "bts:AlacizumabPegol" + "@id": "bts:ChoroidPlexusoftheThirdVentricle" }, { - "@id": "bts:Alanosine" + "@id": "bts:CiliaryBody" }, { - "@id": "bts:Albumin-bindingCisplatinProdrugBTP-114" + "@id": "bts:Clitoris" }, { - "@id": "bts:Aldesleukin" + "@id": "bts:Coccyx" }, { - "@id": "bts:Aldoxorubicin" + "@id": "bts:CochlearNerve" }, { - "@id": "bts:Alectinib" + "@id": "bts:Colon" }, { - "@id": "bts:Alefacept" + "@id": "bts:CommissureoftheLip" }, { - "@id": "bts:Alemtuzumab" + "@id": "bts:CommonBileDuct" }, { - "@id": "bts:Alestramustine" + "@id": "bts:Concha" }, { - "@id": "bts:AlflutinibMesylate" + "@id": "bts:Conjunctiva" }, { - "@id": "bts:Algenpantucel-L" + "@id": "bts:ConnectiveTissue" }, { - "@id": "bts:Alisertib" + "@id": "bts:ConusMedullaris" }, { - "@id": "bts:Alitretinoin" + "@id": "bts:Coracobrachialis" }, { - "@id": "bts:ALKInhibitor" + "@id": "bts:Cornea" }, { - "@id": "bts:ALKInhibitorASP3026" + "@id": "bts:CorneoscleralLimbus" }, { - "@id": "bts:ALKInhibitorPLB1003" + "@id": "bts:CorpusCallosum" }, { - "@id": "bts:ALKInhibitorRO5424802" + "@id": "bts:CorpusStriatum" }, { - "@id": "bts:ALKInhibitorTAE684" + "@id": "bts:CorpusUteri" }, { - "@id": "bts:ALKInhibitorWX-0593" + "@id": "bts:CostalCartilage" }, { - "@id": "bts:ALK-2InhibitorTP-0184" + "@id": "bts:CostovertebralJoint" }, { - "@id": "bts:ALK-FAKInhibitorCEP-37440" + "@id": "bts:CowperGland" }, { - "@id": "bts:ALK/c-MetInhibitorTQ-B3139" + "@id": "bts:CranialNerve" }, { - "@id": "bts:ALK/FAK/Pyk2InhibitorCT-707" + "@id": "bts:CraniopharyngealDuct" }, { - "@id": "bts:ALK/ROS1/MetInhibitorTQ-B3101" + "@id": "bts:CricoidCartilage" }, { - "@id": "bts:ALK/TRKInhibitorTSR-011" + "@id": "bts:Cul-de-sac" }, { - "@id": "bts:Alkotinib" + "@id": "bts:CuneiformCartilage" }, { - "@id": "bts:AllodepletedTCellImmunotherapeuticATIR101" + "@id": "bts:CysticDuct" }, { - "@id": "bts:AllogeneicAnti-BCMACAR-transducedT-cellsALLO-715" + "@id": "bts:DescendingColon" }, { - "@id": "bts:AllogeneicAnti-BCMA-CART-cellsPBCAR269A" + "@id": "bts:Diaphragm" }, { - "@id": "bts:AllogeneicAnti-BCMA/CS1BispecificCAR-TCells" + "@id": "bts:DiaphragmaticLymphNode" }, { - "@id": "bts:AllogeneicAnti-CD19CART-cellsALLO-501A" + "@id": "bts:DomeoftheBladder" }, { - "@id": "bts:AllogeneicAnti-CD19UniversalCAR-TCellsCTA101" + "@id": "bts:DuctofGartner" }, { - "@id": "bts:AllogeneicAnti-CD19-CART-cellsPBCAR0191" + "@id": "bts:DuctusSantorini" }, { - "@id": "bts:AllogeneicAnti-CD20CART-cellsLUCAR-20S" + "@id": "bts:Duodenum" }, { - "@id": "bts:AllogeneicAnti-CD20-CART-cellsPBCAR20A" + "@id": "bts:DuraMater" }, { - "@id": "bts:AllogeneicCD22-specificUniversalCAR-expressingT-lymphocytesUCART22" + "@id": "bts:Ear" }, { - "@id": "bts:AllogeneicCD3-CD19-CD57+NKG2C+NKCellsFATE-NK100" + "@id": "bts:EarSkin" }, { - "@id": "bts:AllogeneicCD56-positiveCD3-negativeNaturalKillerCellsCYNK-001" + "@id": "bts:Ectocervix" }, { - "@id": "bts:AllogeneicCD8+Leukemia-associatedAntigensSpecificTCellsNEXI-001" + "@id": "bts:ElbowJoint" }, { - "@id": "bts:AllogeneicCellularVaccine1650-G" + "@id": "bts:ElbowSkin" }, { - "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-BCMATCellsCTX120" + "@id": "bts:Endocardium" }, { - "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-CD70CAR-TCellsCTX130" + "@id": "bts:Endocervix" }, { - "@id": "bts:AllogeneicCS1-specificUniversalCAR-expressingT-lymphocytesUCARTCS1A" + "@id": "bts:EndocrineGland" }, { - "@id": "bts:AllogeneicGM-CSF-secretingBreastCancerVaccineSV-BR-1-GM" + "@id": "bts:EndometrialStroma" }, { - "@id": "bts:AllogeneicGM-CSF-secretingLethallyIrradiatedProstateCancerVaccine" + "@id": "bts:Endometrium" }, { - "@id": "bts:AllogeneicGM-CSF-secretingLethallyIrradiatedWholeMelanomaCellVaccine" + "@id": "bts:Ependyma" }, { - "@id": "bts:AllogeneicGM-CSF-secretingTumorVaccinePANC10.05pcDNA-1/GM-Neo" + "@id": "bts:Epicardium" }, { - "@id": "bts:AllogeneicGM-CSF-secretingTumorVaccinePANC6.03pcDNA-1/GM-Neo" + "@id": "bts:Epididymis" }, { - "@id": "bts:AllogeneicIL13-Zetakine/HyTK-Expressing-GlucocorticoidResistantCytotoxicTLymphocytesGRm13Z40-2" + "@id": "bts:EpiduralSpinalCanalSpace" }, { - "@id": "bts:AllogeneicIrradiatedMelanomaCellVaccineCSF470" + "@id": "bts:Epiglottis" }, { - "@id": "bts:AllogeneicLargeMultivalentImmunogenMelanomaVaccineLP2307" + "@id": "bts:EpitrochlearLymphNode" }, { - "@id": "bts:AllogeneicMelanomaVaccineAGI-101H" + "@id": "bts:Esophagus" }, { - "@id": "bts:AllogeneicNaturalKillerCellLineMG4101" + "@id": "bts:EthmoidBone" }, { - "@id": "bts:AllogeneicNaturalKillerCellLineNK-92" + "@id": "bts:EthmoidSinus" }, { - "@id": "bts:AllogeneicPlasmacytoidDendriticCellsExpressingLungTumorAntigensPDC*lung01" + "@id": "bts:EustachianTube" }, { - "@id": "bts:AllogeneicRenalCellCarcinomaVaccineMGN1601" + "@id": "bts:ExternalAcousticMeatus" }, { - "@id": "bts:AllogeneicThird-partySuicideGene-transducedAnti-HLA-DPB1*0401CD4+T-cellsCTL19" + "@id": "bts:ExternalEar" }, { - "@id": "bts:AllostericErbBInhibitorBDTX-189" + "@id": "bts:ExternalLip" }, { - "@id": "bts:Allovectin-7" + "@id": "bts:ExternalLowerLip" }, { - "@id": "bts:Almurtide" + "@id": "bts:ExternalNose" }, { - "@id": "bts:Alobresib" + "@id": "bts:ExternalUpperLip" }, { - "@id": "bts:Alofanib" + "@id": "bts:ExtrahepaticBileDuct" }, { - "@id": "bts:Alpelisib" + "@id": "bts:Eye" }, { - "@id": "bts:AlphaGalactosylceramide" + "@id": "bts:Eyebrow" }, { - "@id": "bts:AlphaVBeta1InhibitorATN-161" + "@id": "bts:Eyelid" }, { - "@id": "bts:AlphaVBeta8AntagonistPF-06940434" + "@id": "bts:FacialBone" }, { - "@id": "bts:Alpha-FolateReceptor-targetingThymidylateSynthaseInhibitorONX-0801" + "@id": "bts:FacialNerve" }, { - "@id": "bts:Alpha-GalAGI-134" + "@id": "bts:FallopianTube" }, { - "@id": "bts:Alpha-lactalbumin-derivedSyntheticPeptide-lipidComplexAlpha1H" + "@id": "bts:FalseVocalCord" }, { - "@id": "bts:Alpha-ThioguanineDeoxyriboside" + "@id": "bts:FalxCerebelli" }, { - "@id": "bts:Alpha-tocopheryloxyaceticAcid" + "@id": "bts:FalxCerebri" }, { - "@id": "bts:Alsevalimab" + "@id": "bts:Fascia" }, { - "@id": "bts:Altiratinib" + "@id": "bts:FemaleGenitalia" }, { - "@id": "bts:Altretamine" + "@id": "bts:FemoralArtery" }, { - "@id": "bts:Alvespimycin" + "@id": "bts:FemoralLymphNode" }, { - "@id": "bts:AlvespimycinHydrochloride" + "@id": "bts:FemoralNerve" }, { - "@id": "bts:Alvocidib" + "@id": "bts:Femur" }, { - "@id": "bts:AlvocidibHydrochloride" + "@id": "bts:FibrousTissue" }, { - "@id": "bts:AlvocidibProdrugTP-1287" + "@id": "bts:Fibula" }, { - "@id": "bts:Amatuximab" + "@id": "bts:Finger" }, { - "@id": "bts:Ambamustine" + "@id": "bts:Fingernail" }, { - "@id": "bts:Ambazone" + "@id": "bts:Flank" }, { - "@id": "bts:Amblyomin-X" + "@id": "bts:FloorofMouth" }, { - "@id": "bts:Amcasertib" + "@id": "bts:Foot" }, { - "@id": "bts:Ametantrone" + "@id": "bts:FootBone" }, { - "@id": "bts:Amifostine" + "@id": "bts:FootPhalanx" }, { - "@id": "bts:AminoAcidInjection" + "@id": "bts:FootSkin" }, { - "@id": "bts:Aminocamptothecin" + "@id": "bts:Forearm" }, { - "@id": "bts:AminocamptothecinColloidalDispersion" + "@id": "bts:Forehead" }, { - "@id": "bts:AminoflavoneProdrugAFP464" + "@id": "bts:FourthVentricle" }, { - "@id": "bts:Aminopterin" + "@id": "bts:FrontalBone" }, { - "@id": "bts:AminopterinSodium" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:Amivantamab" + "@id": "bts:FrontalPole" }, { - "@id": "bts:AmolimogeneBepiplasmid" + "@id": "bts:FrontalSinus" }, { - "@id": "bts:AmonafideL-Malate" + "@id": "bts:FundusoftheStomach" }, { - "@id": "bts:Amrubicin" + "@id": "bts:FundusUteri" }, { - "@id": "bts:AmrubicinHydrochloride" + "@id": "bts:Gallbladder" }, { - "@id": "bts:Amsacrine" + "@id": "bts:GastricCardia" }, { - "@id": "bts:AmsacrineLactate" + "@id": "bts:GastricLymphNode" }, { - "@id": "bts:Amsilarotene" + "@id": "bts:GastrocnemiusMuscle" }, { - "@id": "bts:Amustaline" + "@id": "bts:GastroesophagealJunction" }, { - "@id": "bts:AmustalineDihydrochloride" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:Amuvatinib" + "@id": "bts:Gingiva" }, { - "@id": "bts:AmuvatinibHydrochloride" + "@id": "bts:GlandofLittre" }, { - "@id": "bts:Anakinra" + "@id": "bts:GlansPenis" }, { - "@id": "bts:Anastrozole" + "@id": "bts:GlobusPallidus" }, { - "@id": "bts:Anaxirone" + "@id": "bts:GlossopharyngealNerve" }, { - "@id": "bts:Ancitabine" + "@id": "bts:Glottis" }, { - "@id": "bts:AncitabineHydrochloride" + "@id": "bts:GluteusMaximus" }, { - "@id": "bts:Andecaliximab" + "@id": "bts:GreaterCurvatureoftheStomach" }, { - "@id": "bts:AndrogenAntagonistAPC-100" + "@id": "bts:Hand" }, { - "@id": "bts:AndrogenReceptorAntagonistBAY1161116" + "@id": "bts:HandDigit1" }, { - "@id": "bts:AndrogenReceptorAntagonistSHR3680" + "@id": "bts:HandPhalanx" }, { - "@id": "bts:AndrogenReceptorAntagonistTAS3681" + "@id": "bts:HandSkin" }, { - "@id": "bts:AndrogenReceptorAntagonistTRC253" + "@id": "bts:HardPalate" }, { - "@id": "bts:AndrogenReceptorAntisenseOligonucleotideAZD5312" + "@id": "bts:HeadandNeckLymphNode" }, { - "@id": "bts:AndrogenReceptorAntisenseOligonucleotideEZN-4176" + "@id": "bts:HeadofthePancreas" }, { - "@id": "bts:AndrogenReceptorDegraderARV-110" + "@id": "bts:HeadSkin" }, { - "@id": "bts:AndrogenReceptorDegraderCC-94676" + "@id": "bts:Heart" }, { - "@id": "bts:AndrogenReceptorDownregulatorAZD3514" + "@id": "bts:Helix" }, { - "@id": "bts:AndrogenReceptorInhibitorEPI-7386" + "@id": "bts:HematopoieticSystem" }, { - "@id": "bts:AndrogenReceptorLigand-bindingDomain-encodingPlasmidDNAVaccineMVI-118" + "@id": "bts:Hepatic" }, { - "@id": "bts:AndrogenReceptor/GlucocorticoidReceptorAntagonistCB-03-10" + "@id": "bts:HepaticDuct" }, { - "@id": "bts:Andrographolide" + "@id": "bts:HepaticFlexure" }, { - "@id": "bts:AndrostaneSteroidHE3235" + "@id": "bts:HepaticLymphNode" }, { - "@id": "bts:AnetumabRavtansine" + "@id": "bts:Hip" }, { - "@id": "bts:Ang2/VEGF-BindingPeptides-AntibodyFusionProteinCVX-241" + "@id": "bts:HipJoint" }, { - "@id": "bts:AngiogenesisInhibitorGT-111" + "@id": "bts:Hippocampus" }, { - "@id": "bts:AngiogenesisInhibitorJI-101" + "@id": "bts:Humerus" }, { - "@id": "bts:Angiogenesis/HeparanaseInhibitorPG545" + "@id": "bts:Hymen" }, { - "@id": "bts:Angiopoietin-2-specificFusionProteinPF-04856884" + "@id": "bts:HyoidBone" }, { - "@id": "bts:AnhydrousEnol-oxaloacetate" + "@id": "bts:HypoglossalNerve" }, { - "@id": "bts:Anhydrovinblastine" + "@id": "bts:Hypopharynx" }, { - "@id": "bts:AnilineMustard" + "@id": "bts:Hypothalamus" }, { - "@id": "bts:AnlotinibHydrochloride" + "@id": "bts:IleocecalValve" }, { - "@id": "bts:Annamycin" + "@id": "bts:Ileum" }, { - "@id": "bts:AnnamycinLiposomal" + "@id": "bts:IliacArtery" }, { - "@id": "bts:AnnonaceousAcetogenins" + "@id": "bts:IliacLymphNode" }, { - "@id": "bts:AnsamitomicinP-3" + "@id": "bts:IliacVein" }, { - "@id": "bts:Anthramycin" + "@id": "bts:IliopsoasMuscle" }, { - "@id": "bts:Anthrapyrazole" + "@id": "bts:Ilium" }, { - "@id": "bts:Antic-KITAntibody-drugConjugateLOP628" + "@id": "bts:InferiorVenaCava" }, { - "@id": "bts:Anti-5T4Antibody-drugConjugateASN004" + "@id": "bts:InfraclavicularLymphNode" }, { - "@id": "bts:Anti-5T4Antibody-DrugConjugatePF-06263507" + "@id": "bts:InfraclavicularRegion" }, { - "@id": "bts:Anti-5T4Antibody-drugConjugateSYD1875" + "@id": "bts:InfratentorialBrain" }, { - "@id": "bts:Anti-A33MonoclonalAntibodyKRN330" + "@id": "bts:InguinalLymphNode" }, { - "@id": "bts:Anti-A5B1IntegrinMonoclonalAntibodyPF-04605412" + "@id": "bts:InguinalRegion" }, { - "@id": "bts:Anti-ACTR/4-1BB/CD3zeta-ViralVector-transducedAutologousT-LymphocytesACTR087" + "@id": "bts:InnerCanthus" }, { - "@id": "bts:Anti-AG7AntibodyDrugConjugateAbGn-107" + "@id": "bts:InnerEar" }, { - "@id": "bts:Anti-AGS-16MonoclonalAntibodyAGS-16M18" + "@id": "bts:IntercostalLymphNode" }, { - "@id": "bts:Anti-AGS-5Antibody-DrugConjugateASG-5ME" + "@id": "bts:IntercostalMuscle" }, { - "@id": "bts:Anti-AGS-8MonoclonalAntibodyAGS-8M4" + "@id": "bts:IntercostalNerve" }, { - "@id": "bts:Anti-alphaBCMA/Anti-alphaCD3T-cellEngagingBispecificAntibodyTNB-383B" + "@id": "bts:InternalCapsule" }, { - "@id": "bts:Anti-alpha5beta1IntegrinAntibodyMINT1526A" + "@id": "bts:InternalIliacLymphNode" }, { - "@id": "bts:Anti-ANG2MonoclonalAntibodyMEDI-3617" + "@id": "bts:InternalMammaryArtery" }, { - "@id": "bts:Anti-angiopoietinMonoclonalAntibodyAMG780" + "@id": "bts:InternalMammaryLymphNode" }, { - "@id": "bts:Anti-APRILMonoclonalAntibodyBION-1301" + "@id": "bts:InternalNare" }, { - "@id": "bts:Anti-AXLFusionProteinAVB-S6-500" + "@id": "bts:IntervertebralDisc" }, { - "@id": "bts:Anti-AXL/PBDAntibody-drugConjugateADCT-601" + "@id": "bts:Intestine" }, { - "@id": "bts:Anti-B7-H3AntibodyDS-5573a" + "@id": "bts:Intra-AbdominalLymphNode" }, { - "@id": "bts:Anti-B7-H3/DXdAntibody-drugConjugateDS-7300a" + "@id": "bts:IntrahepaticBileDuct" }, { - "@id": "bts:Anti-B7-H4MonoclonalAntibodyFPA150" + "@id": "bts:IntraocularRouteofAdministration" }, { - "@id": "bts:Anti-B7H3Antibody-drugConjugateMGC018" + "@id": "bts:IntrathoracicLymphNode" }, { - "@id": "bts:Anti-BCMAAntibodySEA-BCMA" + "@id": "bts:Iris" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateAMG224" + "@id": "bts:IschiorectalFossa" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateCC-99712" + "@id": "bts:Ischium" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateGSK2857916" + "@id": "bts:IsletofLangerhans" }, { - "@id": "bts:Anti-BCMASparXProteinPlusBCMA-directedAnti-TAAGARCT-cellsCART-ddBCMA" + "@id": "bts:IsthmusUteri" }, { - "@id": "bts:Anti-BCMA/Anti-CD3BispecificAntibodyREGN5459" + "@id": "bts:JawBone" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG420" + "@id": "bts:JawJoint" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG701" + "@id": "bts:Jejunum" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyREGN5458" + "@id": "bts:Joint" }, { - "@id": "bts:Anti-BCMA/PBDADCMEDI2228" + "@id": "bts:Kidney" }, { - "@id": "bts:Anti-BTLAMonoclonalAntibodyTAB004" + "@id": "bts:KneeJoint" }, { - "@id": "bts:Anti-BTN3AAgonisticMonoclonalAntibodyICT01" + "@id": "bts:KneeSkin" }, { - "@id": "bts:Anti-c-fmsMonoclonalAntibodyAMG820" + "@id": "bts:Labium" }, { - "@id": "bts:Anti-c-KITMonoclonalAntibodyCDX0158" + "@id": "bts:LabiumMajus" }, { - "@id": "bts:Anti-c-MetAntibody-drugConjugateHTI-1066" + "@id": "bts:LabiumMinus" }, { - "@id": "bts:Anti-c-MetAntibody-drugConjugateTR1801" + "@id": "bts:LacrimalGland" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyABT-700" + "@id": "bts:LacrimalSac" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyARGX-111" + "@id": "bts:LargeIntestine" }, { - 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"@id": "bts:Burixafor" + "@id": "bts:AllogeneicAnti-CD20CART-cellsLUCAR-20S" }, { - "@id": "bts:BurixaforHydrobromide" + "@id": "bts:AllogeneicAnti-CD20-CART-cellsPBCAR20A" }, { - "@id": "bts:Burosumab" + "@id": "bts:AllogeneicCD22-specificUniversalCAR-expressingT-lymphocytesUCART22" }, { - "@id": "bts:Buserelin" + "@id": "bts:AllogeneicCD3-CD19-CD57+NKG2C+NKCellsFATE-NK100" }, { - "@id": "bts:BushenCuluanDecoction" + "@id": "bts:AllogeneicCD56-positiveCD3-negativeNaturalKillerCellsCYNK-001" }, { - "@id": "bts:Bushen-JianpiDecoction" + "@id": "bts:AllogeneicCD8+Leukemia-associatedAntigensSpecificTCellsNEXI-001" }, { - "@id": "bts:Busulfan" + "@id": "bts:AllogeneicCellularVaccine1650-G" }, { - "@id": "bts:ButhionineSulfoximine" + "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-BCMATCellsCTX120" }, { - "@id": "bts:BXQ-350NanovesicleFormulation" + "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-CD70CAR-TCellsCTX130" }, { - "@id": "bts:C-KitInhibitorPLX9486" + "@id": "bts:AllogeneicCS1-specificUniversalCAR-expressingT-lymphocytesUCARTCS1A" }, { - 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"@id": "bts:C-MetInhibitorMSC2156119J" + "@id": "bts:AllogeneicNaturalKillerCellLineMG4101" }, { - "@id": "bts:C-mybAntisenseOligonucleotideG4460" + "@id": "bts:AllogeneicNaturalKillerCellLineNK-92" }, { - "@id": "bts:C-rafAntisenseOligonucleotideISIS5132" + "@id": "bts:AllogeneicPlasmacytoidDendriticCellsExpressingLungTumorAntigensPDC*lung01" }, { - "@id": "bts:C-VISABikDD:Liposome" + "@id": "bts:AllogeneicRenalCellCarcinomaVaccineMGN1601" }, { - "@id": "bts:C/EBPBetaAntagonistST101" + "@id": "bts:AllogeneicThird-partySuicideGene-transducedAnti-HLA-DPB1*0401CD4+T-cellsCTL19" }, { - "@id": "bts:CAB-ROR2-ADCBA3021" + "@id": "bts:AllostericErbBInhibitorBDTX-189" }, { - "@id": "bts:Cabazitaxel" + "@id": "bts:Allovectin-7" }, { - "@id": "bts:Cabiralizumab" + "@id": "bts:Almurtide" }, { - "@id": "bts:Cabozantinib" + "@id": "bts:Alobresib" }, { - "@id": "bts:CabozantinibS-malate" + "@id": "bts:Alofanib" }, { - "@id": "bts:Cactinomycin" + "@id": "bts:Alpelisib" }, { - "@id": "bts:CaffeicAcidPhenethylEster" + "@id": "bts:AlphaGalactosylceramide" }, { - 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"@id": "bts:FGFR4InhibitorH3B-6527" + "@id": "bts:AutologousAnti-CD19CART-cellsIM19" }, { - "@id": "bts:FGFR4InhibitorICP-105" + "@id": "bts:AutologousAnti-CD19CARTCR-zeta/4-1BB-transducedT-lymphocyteshuCART19" }, { - "@id": "bts:Fianlimab" + "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-expressingT-cellsCNCT19" }, { - "@id": "bts:Fibromun" + "@id": "bts:AutologousAnti-CD19CAR-CD28T-cellsET019002" }, { - "@id": "bts:Ficlatuzumab" + "@id": "bts:AutologousAnti-CD19CAR-CD3zeta-4-1BB-expressingT-cellsPZ01" }, { - "@id": "bts:Figitumumab" + "@id": "bts:AutologousAnti-CD19CAR-expressingT-lymphocytesCLIC-1901" }, { - "@id": "bts:Filanesib" + "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsAUTO1" }, { - "@id": "bts:Filgotinib" + "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsSJCAR19" }, { - "@id": "bts:Filgrastim" + "@id": "bts:AutologousAnti-CD19T-cellReceptorTcellsET190L1" }, { - "@id": "bts:FimaporfinA" + "@id": "bts:AutologousAnti-CD19TAC-TcellsTAC01-CD19" }, { - "@id": "bts:Fimepinostat" + "@id": "bts:AutologousAnti-CD19/CD20BispecificNanobody-basedCAR-Tcells" }, { - "@id": "bts:FirtecanPegol" + "@id": "bts:AutologousAnti-CD19/CD22CART-cellsAUTO3" }, { - "@id": "bts:Fisogatinib" + "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressingCD4+/CD8+CentralMemoryT-lymphocytesJCAR014" }, { - "@id": "bts:Flanvotumab" + "@id": "bts:AutologousAnti-CD19CAR-HER2t/CD22CAR-EGFRt-expressingT-cells" }, { - "@id": "bts:Flotetuzumab" + "@id": "bts:AutologousAnti-CD20CARTransducedCD4/CD8EnrichedT-cellsMB-CART20.1" }, { - "@id": "bts:Floxuridine" + "@id": "bts:AutologousAnti-CD22CAR-4-1BB-TCRz-transducedT-lymphocytesCART22-65s" }, { - "@id": "bts:FLT3InhibitorFF-10101Succinate" + "@id": "bts:AutologousAnti-EGFRCAR-transducedCXCR5-modifiedT-lymphocytes" }, { - "@id": "bts:FLT3InhibitorHM43239" + "@id": "bts:AutologousAnti-FLT3CARTCellsAMG553" }, { - "@id": "bts:FLT3InhibitorSKI-G-801" + "@id": "bts:AutologousAnti-HLA-A*02/AFPTCRm-expressingT-cellsET140202" }, { - "@id": "bts:Flt3Ligand/Anti-CTLA-4Antibody/IL-12EngineeredOncolyticVacciniaVirusRIVAL-01" + "@id": "bts:AutologousAnti-HLA-A*0201/AFPCART-cellsET1402L1" }, { - "@id": "bts:FLT3TyrosineKinaseInhibitorTTT-3002" + "@id": "bts:AutologousAnti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressingT-cellsAIC100" }, { - "@id": "bts:FLT3/ABL/AuroraKinaseInhibitorKW-2449" + "@id": "bts:AutologousAnti-kappaLightChainCAR-CD28-expressingT-lymphocytes" }, { - "@id": "bts:FLT3/CDK4/6InhibitorFLX925" + "@id": "bts:AutologousAnti-NY-ESO-1/LAGE-1TCR-transducedc259TLymphocytesGSK3377794" }, { - "@id": "bts:FLT3/FGFRDualKinaseInhibitorMAX-40279" + "@id": "bts:AutologousAnti-PD-1Antibody-activatedTumor-infiltratingLymphocytes" }, { - "@id": "bts:FLT3/KITKinaseInhibitorAKN-028" + "@id": "bts:AutologousAnti-PSMACAR-TCellsP-PSMA-101" }, { - "@id": "bts:FLT3/KIT/CSF1RInhibitorNMS-03592088" + "@id": "bts:AutologousAXL-targetedCART-cellsCCT301-38" }, { - "@id": "bts:Flt3/MerTKInhibitorMRX-2843" + "@id": "bts:AutologousB-cell/Monocyte-presentingHER2/neuAntigenVaccineBVAC-B" }, { - "@id": "bts:Fludarabine" + "@id": "bts:AutologousBCMA-targetedCARTCellsCC-98633" }, { - "@id": "bts:FludarabinePhosphate" + "@id": "bts:AutologousBCMA-targetedCARTCellsLCAR-B4822M" }, { - "@id": "bts:Flumatinib" + "@id": "bts:AutologousBi-epitopeBCMA-targetedCART-cellsJNJ-68284528" }, { - "@id": "bts:FlumatinibMesylate" + "@id": "bts:AutologousBispecificBCMA/CD19-targetedCAR-TCellsGC012F" }, { - "@id": "bts:FluorineF18Ara-G" + "@id": "bts:AutologousBispecificCD19/CD22-targetedCAR-TCellsGC022" }, { - "@id": "bts:Fluorodopan" + "@id": "bts:AutologousBoneMarrow-derivedCD34/CXCR4-positiveStemCellsAMR-001" }, { - "@id": "bts:Fluorouracil" + "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3005" }, { - "@id": "bts:FluorouracilImplant" + "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3006" }, { - "@id": "bts:Fluorouracil-ETherapeuticImplant" + "@id": "bts:AutologousCD123-4SCAR-expressingT-cells4SCAR123" }, { - "@id": "bts:Fluoxymesterone" + "@id": "bts:AutologousCD19CAR-expressingCD4+/CD8+T-cellsMB-CART19.1" }, { - "@id": "bts:Flutamide" + "@id": "bts:AutologousCD19-targetedCARTCellsCC-97540" }, { - "@id": "bts:Fluvastatin" + "@id": "bts:AutologousCD19-targetedCARTCellsJWCAR029" }, { - "@id": "bts:FluvastatinSodium" + "@id": "bts:AutologousCD19-targetedCAR-TCellsGC007F" }, { - "@id": "bts:Fluzoparib" + "@id": "bts:AutologousCD19/PD-1BispecificCAR-TCells" }, { - "@id": "bts:FMSInhibitorJNJ-40346527" + "@id": "bts:AutologousCD20-4SCAR-expressingT-cells4SCAR20" }, { - "@id": "bts:Fms/TrkTyrosineKinaseInhibitorPLX7486Tosylate" + "@id": "bts:AutologousCD22-4SCAR-expressingT-cells4SCAR22" }, { - "@id": "bts:FolateReceptorTargetedEpothiloneBMS753493" + "@id": "bts:AutologousCD38-4SCAR-expressingT-cells4SCAR38" }, { - "@id": "bts:FolateReceptor-TargetedTubulysinConjugateEC1456" + "@id": "bts:AutologousClonalNeoantigenTCellsATL001" }, { - "@id": "bts:FolateReceptor-TargetedVincaAlkaloidEC0489" + "@id": "bts:AutologousCRISPR-editedAnti-CD19CARTCellsXYF19" }, { - "@id": "bts:FolateReceptor-TargetedVincaAlkaloid/MitomycinCEC0225" + "@id": "bts:AutologousDeepIL-15PrimedT-cellsTRQ15-01" }, { - "@id": "bts:Folate-FITC" + "@id": "bts:AutologousDendriticCellVaccineACT2001" }, { - "@id": "bts:FolicAcid" + "@id": "bts:AutologousDendriticCell-basedImmunotherapeuticAV0113" }, { - "@id": "bts:Folitixorin" + "@id": "bts:AutologousFRa-4SCAR-expressingT-cells4SCAR-FRa" }, { - "@id": "bts:Foretinib" + "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032CD8alphaTCells" }, { - "@id": "bts:ForitinibSuccinate" + "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032TCells" }, { - "@id": "bts:Formestane" + "@id": "bts:AutologousHeat-ShockProtein70PeptideVaccineAG-858" }, { - "@id": "bts:ForodesineHydrochloride" + "@id": "bts:AutologousHPV16E7-specificHLA-A*02:01-restrictedTCRGeneEngineeredLymphocytesKITE-439" }, { - "@id": "bts:Fosaprepitant" + "@id": "bts:AutologousLMP1/LMP2/EBNA1-specificHLA-A02:01/24:02/11:01-restrictedTCR-expressingT-lymphocytesYT-E001" }, { - "@id": "bts:Fosbretabulin" + "@id": "bts:AutologousMAGE-A3/A6-specificTCRGene-engineeredLymphocytesKITE-718" }, { - "@id": "bts:FosbretabulinDisodium" + "@id": "bts:AutologousMCPyV-specificHLA-A02-restrictedTCR-transducedCD4+andCD8+T-cellsFH-MCVA2TCR" }, { - 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"@id": "bts:IodineI131MonoclonalAntibodyBC8" + "@id": "bts:CDK9InhibitorAZD4573" }, { - "@id": "bts:IodineI131MonoclonalAntibodyCC49-deltaCH2" + "@id": "bts:CEA-MUC-1-TRICOMVaccineCV301" }, { - "@id": "bts:IodineI131MonoclonalAntibodyF16SIP" + "@id": "bts:CEA-targetingAgentRG6123" }, { - "@id": "bts:IodineI131MonoclonalAntibodyG-250" + "@id": "bts:CEBPA-targetingsaRNAMTL-CEBPALiposome" }, { - "@id": "bts:IodineI131MonoclonalAntibodymuJ591" + "@id": "bts:Cedazuridine" }, { - "@id": "bts:IodineI131Omburtamab" + "@id": "bts:Cedazuridine/AzacitidineCombinationAgentASTX030" }, { - "@id": "bts:IodineI131Rituximab" + "@id": "bts:Cedazuridine/DecitabineCombinationAgentASTX727" }, { - "@id": "bts:IodineI131Tenatumomab" + "@id": "bts:Cedefingol" }, { - "@id": "bts:IodineI131TM-601" + "@id": "bts:Cediranib" }, { - "@id": "bts:IodineI131Tositumomab" + "@id": "bts:CediranibMaleate" }, { - "@id": "bts:IodineI-131" + "@id": "bts:Celecoxib" }, { - "@id": "bts:IoflubenzamideI-131" + "@id": "bts:CellCycleCheckpoint/DNARepairAntagonistIC83" }, { - "@id": "bts:Ionomycin" + "@id": "bts:Cemadotin" }, { - "@id": "bts:Ipafricept" + "@id": "bts:CemadotinHydrochloride" }, { - "@id": "bts:Ipatasertib" + "@id": "bts:Cemiplimab" }, { - "@id": "bts:Ipilimumab" + "@id": "bts:Cenersen" }, { - "@id": "bts:Ipomeanol" + "@id": "bts:Cenisertib" }, { - "@id": "bts:Iproplatin" + "@id": "bts:CENP-EInhibitorGSK-923295" }, { - "@id": "bts:IPSC-derivedCD16-expressingNaturalKillerCellsFT516" + "@id": "bts:Ceralasertib" }, { - "@id": "bts:IPSC-derivedCD16/IL-15RF-expressingAnti-CD19CAR-NKCellsFT596" + "@id": "bts:CeramideNanoliposome" }, { - "@id": "bts:IPSC-derivedNaturalKillerCellsFT500" + "@id": "bts:Cerdulatinib" }, { - "@id": "bts:IRAK4InhibitorCA-4948" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-92480" }, { - "@id": "bts:Iratumumab" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-99282" }, { - "@id": "bts:IridiumIr192" + "@id": "bts:CereblonModulatorCC-90009" }, { - "@id": "bts:Irinotecan" + "@id": "bts:CergutuzumabAmunaleukin" }, { - "@id": "bts:IrinotecanHydrochloride" + "@id": "bts:Ceritinib" }, { - "@id": "bts:IrinotecanSucrosofate" + "@id": "bts:Cesalin" }, { - "@id": "bts:Irinotecan-ElutingBeads" + "@id": "bts:CEtKRASAntisenseOligonucleotideAZD4785" }, { - "@id": "bts:Irinotecan/P-glycoproteinInhibitorHM30181AKCombinationTablet" + "@id": "bts:Cetrelimab" }, { - "@id": "bts:Irofulven" + "@id": "bts:Cetuximab" }, { - "@id": "bts:Iroplact" + "@id": "bts:CetuximabSarotalocan" }, { - "@id": "bts:Irosustat" + "@id": "bts:Cetuximab-IR700ConjugateRM-1929" }, { - "@id": "bts:IrradiatedAllogeneicHumanLungCancerCellsExpressingOX40L-IgVaccineHS-130" + "@id": "bts:Cetuximab-loadedEthylcellulosePolymericNanoparticlesDecoratedwithOctreotide(SY)" }, { - "@id": "bts:Isatuximab" + "@id": "bts:Cevipabulin" }, { - "@id": "bts:Iso-fludelone" + "@id": "bts:CevipabulinFumarate" }, { - "@id": "bts:IsobruceinB" + "@id": "bts:CevipabulinSuccinate" }, { - "@id": "bts:IsocoumarinNM-3" + "@id": "bts:Cevostamab" }, { - "@id": "bts:Isotretinoin" + "@id": "bts:CFMSTyrosineKinaseInhibitorARRY-382" }, { - "@id": "bts:Ispinesib" + "@id": "bts:Chaparrin" }, { - "@id": "bts:IspinesibMesylate" + "@id": "bts:Chaparrinone" }, { - "@id": "bts:ISS1018CpGOligodeoxynucleotide" + "@id": "bts:CheckpointKinaseInhibitorAZD7762" }, { - "@id": "bts:Istiratumab" + "@id": "bts:CheckpointKinaseInhibitorXL844" }, { - "@id": "bts:Itacitinib" + "@id": "bts:Chemotherapy" }, { - "@id": "bts:ItacitinibAdipate" + "@id": "bts:Chiauranib" }, { - "@id": "bts:ITKInhibitorCPI-818" + "@id": "bts:ChimericMonoclonalAntibody81C6" }, { - "@id": "bts:Itraconazole" + "@id": "bts:ChiNingDecoction" }, { - "@id": "bts:ItraconazoleDispersionInPolymerMatrix" + "@id": "bts:Chk1InhibitorCCT245737" }, { - "@id": "bts:Ivaltinostat" + "@id": "bts:Chk1InhibitorGDC-0425" }, { - "@id": "bts:Ivosidenib" + "@id": "bts:Chk1InhibitorGDC-0575" }, { - "@id": "bts:Ivuxolimab" + "@id": "bts:CHK1InhibitorMK-8776" }, { - "@id": "bts:Ixabepilone" + "@id": "bts:CHK1InhibitorPF-477736" }, { - "@id": "bts:Ixazomib" + "@id": "bts:Chlorambucil" }, { - "@id": "bts:IxazomibCitrate" + "@id": "bts:Chlorodihydropyrimidine" }, { - "@id": "bts:JAKInhibitor" + "@id": "bts:Chloroquine" }, { - "@id": "bts:JAKInhibitorINCB047986" + "@id": "bts:ChloroquinoxalineSulfonamide" }, { - "@id": "bts:JAK1InhibitorAZD4205" + "@id": "bts:Chlorotoxin" }, { - "@id": "bts:JAK1InhibitorINCB052793" + "@id": "bts:Chlorotoxin(EQ)-CD28-CD3zeta-CD19t-expressingCART-lymphocytes" }, { - "@id": "bts:JAK2InhibitorAZD1480" + "@id": "bts:Chlorozotocin" }, { - "@id": "bts:JAK2InhibitorBMS-911543" + "@id": "bts:CholineKinaseAlphaInhibitorTCD-717" }, { - "@id": "bts:JAK2InhibitorXL019" + "@id": "bts:CHP-NY-ESO-1PeptideVaccineIMF-001" }, { - "@id": "bts:JAK2/SrcInhibitorNS-018" + "@id": "bts:ChromomycinA3" }, { - "@id": "bts:JinFuKang" + "@id": "bts:Chrysanthemummorifolium/Ganodermalucidum/Glycyrrhizaglabra/Isatisindigotica/Panaxpseudoginseng/Rabdosiarubescens/Scutellariabaicalensis/SeronarepensSupplement" }, { - "@id": "bts:JNKInhibitorCC-401" + "@id": "bts:Cibisatamab" }, { - "@id": "bts:Kanglaite" + "@id": "bts:CiclopiroxProdrugCPX-POM" }, { - "@id": "bts:Kanitinib" + "@id": "bts:CidanHerbalCapsule" }, { - "@id": "bts:Ketoconazole" + "@id": "bts:Ciforadenant" }, { - "@id": "bts:Ketotrexate" + "@id": "bts:Cilengitide" }, { - "@id": "bts:KRASG12CInhibitorGDC-6036" + "@id": "bts:CiltacabtageneAutoleucel" }, { - "@id": "bts:KRASG12CInhibitorLY3499446" + "@id": "bts:Cimetidine" }, { - "@id": "bts:KRASG12CInhibitorMRTX849" + "@id": "bts:CinacalcetHydrochloride" }, { - "@id": "bts:KRASMutant-targetingAMG510" + "@id": "bts:Cinobufagin" }, { - "@id": "bts:KRAS-MAPKSignalingPathwayInhibitorJAB-3312" + "@id": "bts:Cinobufotalin" }, { - "@id": "bts:KRASG12CInhibitorJNJ-74699157" + "@id": "bts:CinrebafuspAlfa" }, { - "@id": "bts:KRN5500" + "@id": "bts:Cintirorgon" }, { - "@id": "bts:KSPInhibitorAZD4877" + "@id": "bts:CintredekinBesudotox" }, { - "@id": "bts:KSPInhibitorSB-743921" + "@id": "bts:Cirmtuzumab" }, { - "@id": "bts:KunecatechinsOintment" + "@id": "bts:Cis-UrocanicAcid" }, { - "@id": "bts:L-Gossypol" + "@id": "bts:Cisplatin" }, { - "@id": "bts:L-methylfolate" + "@id": "bts:CisplatinLiposomal" }, { - "@id": "bts:LabetuzumabGovitecan" + "@id": "bts:Cisplatin-ETherapeuticImplant" }, { - "@id": "bts:Lactoferrin-derivedLyticPeptideLTX-315" + "@id": "bts:Cisplatin/Vinblastine/CellPenetrationEnhancerFormulationINT230-6" }, { - "@id": "bts:Lacutamab" + "@id": "bts:Citarinostat" }, { - "@id": "bts:LadiratuzumabVedotin" + "@id": "bts:CitatuzumabBogatox" }, { - "@id": "bts:Ladirubicin" + "@id": "bts:Cixutumumab" }, { - "@id": "bts:Laetrile" + "@id": "bts:CK1alpha/CDK7/CDK9InhibitorBTX-A51" }, { - "@id": "bts:LAIR-2FusionProteinNC410" + "@id": "bts:CK2-targetingSyntheticPeptideCIGB-300" }, { - "@id": "bts:Landogrozumab" + "@id": "bts:CL246738" }, { - "@id": "bts:Laniquidar" + "@id": "bts:Cladribine" }, { - "@id": "bts:LanreotideAcetate" + "@id": "bts:Clanfenur" }, { - "@id": "bts:Lapachone" + "@id": "bts:Clarithromycin" }, { - "@id": "bts:Lapatinib" + "@id": "bts:Class1/4HistoneDeacetylaseInhibitorOKI-179" }, { - "@id": "bts:LapatinibDitosylate" + "@id": "bts:ClinicalTrial" }, { - "@id": "bts:LaprituximabEmtansine" + "@id": "bts:ClinicalTrialAgent" }, { - "@id": "bts:Lapuleucel-T" + "@id": "bts:Clioquinol" }, { - "@id": "bts:Laromustine" + "@id": "bts:Clivatuzumab" }, { - "@id": "bts:Larotaxel" + "@id": "bts:ClodronateDisodium" }, { - "@id": "bts:LarotinibMesylate" + "@id": "bts:ClodronicAcid" }, { - "@id": "bts:Larotrectinib" + "@id": "bts:Clofarabine" }, { - "@id": "bts:LarotrectinibSulfate" + "@id": "bts:Clomesone" }, { - "@id": "bts:LavendustinA" + "@id": "bts:Clomiphene" }, { - "@id": "bts:Lazertinib" + "@id": "bts:ClomipheneCitrate" }, { - "@id": "bts:LeadPb212TCMC-trastuzumab" + "@id": "bts:ClostridiumNovyi-NTSpores" }, { - "@id": "bts:Lefitolimod" + "@id": "bts:Cobimetinib" }, { - "@id": "bts:Leflunomide" + "@id": "bts:Cobolimab" }, { - "@id": "bts:Lenalidomide" + "@id": "bts:Cobomarsen" }, { - "@id": "bts:LenalidomideAnalogKPG-121" + "@id": "bts:Codrituzumab" }, { - "@id": "bts:Lentinan" + "@id": "bts:CoenzymeQ10" }, { - "@id": "bts:Lenvatinib" + "@id": "bts:CofetuzumabPelidotin" }, { - "@id": "bts:LenvatinibMesylate" + "@id": "bts:Colchicine-SiteBindingAgentABT-751" }, { - "@id": "bts:Lenzilumab" + "@id": "bts:ColdContaminant-freeIobenguaneI-131" }, { - "@id": "bts:Lerociclib" + "@id": "bts:ColloidalGold-BoundTumorNecrosisFactor" }, { - "@id": "bts:Lestaurtinib" + "@id": "bts:ColorectalCancerPeptideVaccinePolyPEPI1018" }, { - "@id": "bts:LetetresgeneAutoleucel" + "@id": "bts:ColorectalTumor-AssociatedPeptidesVaccineIMA910" }, { - "@id": "bts:Letolizumab" + "@id": "bts:ColtuximabRavtansine" }, { - "@id": "bts:Letrozole" + "@id": "bts:Combretastatin" }, { - "@id": "bts:Leucovorin" + "@id": "bts:CombretastatinA-1" }, { - "@id": "bts:LeucovorinCalcium" + "@id": "bts:CombretastatinA1Diphosphate" }, { - "@id": "bts:Leuprolide" + "@id": "bts:CommensalBacterialStrainFormulationVE800" }, { - "@id": "bts:LeuprolideAcetate" + "@id": "bts:CompoundKushenInjection" }, { - "@id": "bts:LeuprolideMesylateInjectableSuspension" + "@id": "bts:Conatumumab" }, { - "@id": "bts:Leurubicin" + "@id": "bts:Conbercept" }, { - "@id": "bts:Levetiracetam" + "@id": "bts:ConcentratedLingzhiMushroomExtract" }, { - "@id": "bts:LevoleucovorinCalcium" + "@id": "bts:ConditionallyActiveBiologicAnti-AXLAntibody-drugConjugateBA3011" }, { - "@id": "bts:Levothyroxine" + "@id": "bts:Copanlisib" }, { - "@id": "bts:LevothyroxineSodium" + "@id": "bts:CopanlisibHydrochloride" }, { - "@id": "bts:Lexatumumab" + "@id": "bts:CopperCu64-ATSM" }, { - "@id": "bts:Lexibulin" + "@id": "bts:CopperCu67Tyr3-octreotate" }, { - "@id": "bts:Liarozole" + "@id": "bts:CopperGluconate" }, { - "@id": "bts:LiarozoleFumarate" + "@id": "bts:CordBloodDerivedCART-Cells" }, { - "@id": "bts:LiarozoleHydrochloride" + "@id": "bts:CordBlood-derivedExpandedNaturalKillerCellsPNK-007" }, { - "@id": "bts:Licartin" + "@id": "bts:Cordycepin" }, { - "@id": "bts:Licorice" + "@id": "bts:CordycepinTriphosphate" }, { - "@id": "bts:LifastuzumabVedotin" + "@id": "bts:CoriolusVersicolorExtract" }, { - "@id": "bts:Lifileucel" + "@id": "bts:CorticorelinAcetate" }, { - "@id": "bts:Lifirafenib" + "@id": "bts:CortisoneAcetate" }, { - "@id": "bts:Light-activatedAU-011" + "@id": "bts:Cosibelimab" }, { - "@id": "bts:Light-EmittingOncolyticVacciniaVirusGL-ONC1" + "@id": "bts:Cositecan" }, { - "@id": "bts:Lilotomab" + "@id": "bts:CoxsackievirusA21" }, { - "@id": "bts:Limonene;(+)-" + "@id": "bts:CoxsackievirusV937" }, { - "@id": "bts:Limonene;(+/-)-" + "@id": "bts:CpGOligodeoxynucleotideGNKG168" }, { - "@id": "bts:Linifanib" + "@id": "bts:Crenolanib" }, { - "@id": "bts:LinoleylCarbonate-Paclitaxel" + "@id": "bts:CrenolanibBesylate" }, { - "@id": "bts:Linperlisib" + "@id": "bts:Crizotinib" }, { - "@id": "bts:Linrodostat" + "@id": "bts:Crolibulin" }, { - "@id": "bts:Linsitinib" + "@id": "bts:Cryptophycin" }, { - "@id": "bts:Lintuzumab" + "@id": "bts:Cryptophycin52" }, { - "@id": "bts:LiothyronineI-131" + "@id": "bts:CrystallineGenisteinFormulationAXP107-11" }, { - "@id": "bts:LiothyronineSodium" + "@id": "bts:CSF-1RInhibitorBLZ945" }, { - "@id": "bts:LipidEncapsulatedAnti-PLK1siRNATKM-PLK1" + "@id": "bts:CSF1RInhibitorABSK021" }, { - "@id": "bts:LipidNanoparticleEncapsulatedmRNAsEncodingHumanIL-12A/IL-12BMEDI-1191" + "@id": "bts:CSF1RInhibitorDCC-3014" }, { - "@id": "bts:LipidNanoparticleEncapsulatedOX40LmRNA-2416" + "@id": "bts:CSF1RInhibitorPLX73086" }, { - "@id": "bts:LipidNanoparticleEncapsulatingGlutathioneS-transferasePsiRNANBF-006" + "@id": "bts:CT2584HMS" }, { - "@id": "bts:LipidNanoparticleEncapsulatingmRNAsEncodingHumanOX40L/IL-23/IL-36gammamRNA-2752" + "@id": "bts:CTLA-4-directedProbodyBMS-986249" }, { - "@id": "bts:LiposomalBcl-2AntisenseOligonucleotideBP1002" + "@id": "bts:Curcumin" }, { - "@id": "bts:Liposomalc-rafAntisenseOligonucleotide" + "@id": "bts:Curcumin/Doxorubicin-encapsulatingNanoparticleIMX-110" }, { - "@id": "bts:LiposomalCurcumin" + "@id": "bts:Cusatuzumab" }, { - "@id": "bts:LiposomalCytarabine" + "@id": "bts:CustirsenSodium" }, { - "@id": "bts:LiposomalDaunorubicinCitrate" + "@id": "bts:CXCChemokineReceptor2AntagonistAZD5069" }, { - "@id": "bts:LiposomalDocetaxel" + "@id": "bts:CXCR1/2InhibitorSX-682" }, { - "@id": "bts:LiposomalEribulinMesylate" + "@id": "bts:CXCR2AntagonistQBM076" }, { - "@id": "bts:LiposomalHPV-16E6/E7MultipeptideVaccinePDS0101" + "@id": "bts:CXCR4AntagonistBL-8040" }, { - "@id": "bts:LiposomalIrinotecan" + "@id": "bts:CXCR4AntagonistUSL311" }, { - "@id": "bts:LiposomalMitoxantroneHydrochloride" + "@id": "bts:CXCR4InhibitorQ-122" }, { - "@id": "bts:LiposomalMUC1/PET-lipidAVaccineONT-10" + "@id": "bts:CXCR4PeptideAntagonistLY2510924" }, { - "@id": "bts:LiposomalNDDP" + "@id": "bts:CXCR4/E-selectinAntagonistGMI-1359" }, { - "@id": "bts:LiposomalRheniumRe186" + "@id": "bts:Cyclin-dependentKinase8/19InhibitorBCD115" }, { - "@id": "bts:LiposomalSN-38" + "@id": "bts:Cyclin-dependentKinaseInhibitorPF-06873600" }, { - "@id": "bts:LiposomalTopotecanFF-10850" + "@id": "bts:Cyclodextrin-BasedPolymer-CamptothecinCRLX101" }, { - "@id": "bts:LiposomalVinorelbine" + "@id": "bts:Cyclodisone" }, { - "@id": "bts:LiposomalVinorelbineTartrate" + "@id": "bts:Cycloleucine" }, { - "@id": "bts:Liposome" + "@id": "bts:CyclopentenylCytosine" }, { - 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"@id": "bts:PerillylAlcohol" + "@id": "bts:IL-2/9/15GammaChainReceptorInhibitorBNZ-1" }, { - "@id": "bts:PersonalizedALL-specificMulti-HLA-bindingPeptideVaccine" + "@id": "bts:IL4-PseudomonasExotoxinFusionProteinMDNA55" }, { - "@id": "bts:PersonalizedandAdjustedNeoantigenPeptideVaccinePANDA-VAC" + "@id": "bts:Ilginatinib" }, { - "@id": "bts:PersonalizedCancerVaccineRO7198457" + "@id": "bts:Ilixadencel" }, { - "@id": "bts:PersonalizedNeoantigenDNAVaccineGNOS-PV01" + "@id": "bts:Iloprost" }, { - "@id": "bts:PersonalizedNeoantigenDNAVaccineGNOS-PVO2" + "@id": "bts:Ilorasertib" }, { - "@id": "bts:PersonalizedNeoantigenPeptideVaccineiNeo-Vac-P01" + "@id": "bts:Imalumab" }, { - "@id": "bts:PersonalizedNeoepitopeYeastVaccineYE-NEO-001" + "@id": "bts:Imaradenant" }, { - "@id": "bts:PersonalizedPeptideCancerVaccineNEO-PV-01" + "@id": "bts:Imatinib" }, { - "@id": "bts:Pertuzumab" + "@id": "bts:ImatinibMesylate" }, { - "@id": "bts:Pevonedistat" + "@id": "bts:Imetelstat" }, { - "@id": "bts:PexastimogeneDevacirepvec" + "@id": "bts:ImetelstatSodium" }, { - 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"@id": "bts:RetrovectorEncodingMutantAnti-CyclinG1" + "@id": "bts:Macitentan" }, { - "@id": "bts:Revdofilimab" + "@id": "bts:Macrocycle-bridgedSTINGAgonistE7766" }, { - "@id": "bts:RexinoidNRX194204" + "@id": "bts:Maekmoondong-tang" }, { - "@id": "bts:Rezivertinib" + "@id": "bts:Mafosfamide" }, { - "@id": "bts:RFT5-dgAImmunotoxinIMTOX25" + "@id": "bts:MAGE-10.A2" }, { - "@id": "bts:RheniumRe188BMEDA-labeledLiposomes" + "@id": "bts:MAGE-A1-specificTCellReceptor-transducedAutologousT-cells" }, { - "@id": "bts:RheniumRe-186HydroxyethylideneDiphosphonate" + "@id": "bts:MAGE-A3MultipeptideVaccineGL-0817" }, { - "@id": "bts:RheniumRe-188EthiodizedOil" + "@id": "bts:MAGE-A3PeptideVaccine" }, { - "@id": "bts:RheniumRe-188Etidronate" + "@id": "bts:MAGE-A3-specificImmunotherapeuticGSK2132231A" }, { - "@id": "bts:Rhizoxin" + "@id": "bts:MAGE-A4-specificTCRGene-transducedAutologousTLymphocytesTBI-1201" }, { - "@id": "bts:RhoCPeptideVaccineRV001V" + "@id": "bts:MagnesiumValproate" }, { - "@id": "bts:Ribociclib" + "@id": "bts:Magrolimab" }, { - "@id": "bts:Ribociclib/Letrozole" + "@id": "bts:MALT1InhibitorJNJ-67856633" }, { - "@id": "bts:RibonucleaseQBI-139" + "@id": "bts:Manelimab" }, { - "@id": "bts:Ribosome-InactivatingProteinCY503" + "@id": "bts:Mannosulfan" }, { - "@id": "bts:RibozymeRPI.4610" + "@id": "bts:MannosylerythritolLipid" }, { - "@id": "bts:RiceBran" + "@id": "bts:Mapatumumab" }, { - "@id": "bts:Ricolinostat" + "@id": "bts:MarabaOncolyticVirusExpressingMutantHPVE6/E7" }, { - "@id": "bts:Ridaforolimus" + "@id": "bts:Marcellomycin" }, { - "@id": "bts:Rigosertib" + "@id": "bts:MARCKSProteinInhibitorBIO-11006" }, { - "@id": "bts:RigosertibSodium" + "@id": "bts:Margetuximab" }, { - "@id": "bts:RilimogeneGalvacirepvec" + "@id": "bts:Marimastat" }, { - "@id": "bts:RilimogeneGalvacirepvec/RilimogeneGlafolivec" + "@id": "bts:Marizomib" }, { - "@id": "bts:RilimogeneGlafolivec" + "@id": "bts:MasitinibMesylate" }, { - "@id": "bts:Rilotumumab" + "@id": "bts:Masoprocol" }, { - "@id": "bts:Rindopepimut" + "@id": "bts:MAT2AInhibitorAG-270" }, { - 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"@id": "bts:ROBO1-targetedBiCAR-NKTCells" + "@id": "bts:MDM2InhibitorAMGMDS3" }, { - "@id": "bts:RocakinogeneSifuplasmid" + "@id": "bts:MDM2InhibitorBI907828" }, { - "@id": "bts:Rocapuldencel-T" + "@id": "bts:MDM2InhibitorKRT-232" }, { - "@id": "bts:Rociletinib" + "@id": "bts:MDM2/MDMXInhibitorALRN-6924" }, { - "@id": "bts:Rodorubicin" + "@id": "bts:MDRModulatorCBT-1" }, { - "@id": "bts:Roducitabine" + "@id": "bts:Mechlorethamine" }, { - "@id": "bts:Rofecoxib" + "@id": "bts:MechlorethamineHydrochloride" }, { - "@id": "bts:Roflumilast" + "@id": "bts:MechlorethamineHydrochlorideGel" }, { - "@id": "bts:Rogaratinib" + "@id": "bts:Medorubicin" }, { - "@id": "bts:Rogletimide" + "@id": "bts:Medroxyprogesterone" }, { - "@id": "bts:RolinsatamabTalirine" + "@id": "bts:MedroxyprogesteroneAcetate" }, { - "@id": "bts:Romidepsin" + "@id": "bts:MegestrolAcetate" }, { - "@id": "bts:Roneparstat" + "@id": "bts:MEK1/2InhibitorAS703988/MSC2015103B" }, { - "@id": "bts:Roniciclib" + "@id": "bts:MEK1/2InhibitorFCN-159" }, { - 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"@id": "bts:TrkAInhibitorVMD-928" + "@id": "bts:Panulisib" }, { - "@id": "bts:Trodusquemine" + "@id": "bts:Paricalcitol" }, { - "@id": "bts:Trofosfamide" + "@id": "bts:PARP1/2InhibitorIMP4297" }, { - "@id": "bts:Troglitazone" + "@id": "bts:PARP1/2InhibitorNOV1401" }, { - "@id": "bts:TropomyosinReceptorKinaseInhibitorAZD7451" + "@id": "bts:PARPInhibitorAZD2461" }, { - "@id": "bts:Troriluzole" + "@id": "bts:PARPInhibitorCEP-9722" }, { - "@id": "bts:Troxacitabine" + "@id": "bts:PARPInhibitorE7016" }, { - "@id": "bts:TroxacitabineNucleotideProdrugMIV-818" + "@id": "bts:PARPInhibitorNMS-03305293" }, { - "@id": "bts:TRPM8AgonistD-3263" + "@id": "bts:PARP-1/2InhibitorABT-767" }, { - "@id": "bts:TRPV6CalciumChannelInhibitorSOR-C13" + "@id": "bts:PARP/TankyraseInhibitor2X-121" }, { - "@id": "bts:TSP-1MimeticABT-510" + "@id": "bts:PARP7InhibitorRBN-2397" }, { - "@id": "bts:TSP-1MimeticFusionProteinCVX-045" + "@id": "bts:Parsaclisib" }, { - "@id": "bts:Tubercidin" + "@id": "bts:ParsaclisibHydrochloride" }, { - 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"@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" + "@id": "bts:Sizofiran" }, { - "@id": "bts:EmbryonalCarcinoma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:SLC6A8InhibitorRGX-202" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;CNSGermCellTumors;CNSGerminoma" + "@id": "bts:SLCTInhibitorGNS561" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PleomorphicXanthoastrocytoma" + "@id": "bts:SMACMimeticBI891065" }, { - "@id": "bts:LowCumulativeSunDamageMelanoma" + "@id": "bts:SmacMimeticGDC-0152" }, { - "@id": "bts:SupratentorialEpendymoma" + "@id": "bts:SmacMimeticGDC-0917" }, { - "@id": "bts:OssifyingFibromyxoidTumor;NOS" + "@id": "bts:SmacMimeticLCL161" }, { - "@id": "bts:DiffuseLargeB-CellLymphoma;NOS" + "@id": "bts:SMOProteinInhibitorZSP1602" }, { - "@id": "bts:AdenocarcinomaWithNeuroendocrineDifferentiation" + "@id": "bts:SmoothenedAntagonistBMS-833923" }, { - "@id": "bts:AtypicalMeningioma" + "@id": "bts:SmoothenedAntagonistLDE225Topical" }, { - "@id": "bts:Pineoblastoma" + "@id": "bts:SmoothenedAntagonistLEQ506" }, { - "@id": "bts:ChronicMyeloidLeukemia;NOS" + "@id": "bts:SmoothenedAntagonistTAK-441" }, { - "@id": "bts:AtypicalChoroidPlexusPapilloma" + "@id": "bts:SN-38-LoadedPolymericMicellesNK012" }, { - "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFB" + "@id": "bts:SNS01-TNanoparticles" }, { - "@id": "bts:PleomorphicXanthoastrocytoma;NOS;High-GradeGlioma" + "@id": "bts:Sobuzoxane" }, { - "@id": "bts:OxyphilicAdenocarcinoma" + "@id": "bts:SodiumBorocaptate" }, { - "@id": "bts:FavorPilocyticAstrocytoma;CNSWHOGrade1" + "@id": "bts:SodiumButyrate" }, { - "@id": "bts:PoorlyDifferentiated;IntermediateMitotic-KaryorrhecticIndex" + "@id": "bts:SodiumDichloroacetate" }, { - "@id": "bts:ClearCellMeningioma" + "@id": "bts:SodiumIodideI-131" }, { - "@id": "bts:Medulloblastoma;ClassicHistologicType;CNSWHOGrade4" + "@id": "bts:SodiumMetaarsenite" }, { - "@id": "bts:AppearancesConsistentWithAlveolarSoftPartSarcoma" + "@id": "bts:SodiumPhenylbutyrate" }, { - "@id": "bts:DedifferentiatedLiposarcoma" + "@id": "bts:SodiumSalicylate" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" + "@id": "bts:SodiumSelenite" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:SodiumStibogluconate" }, { - "@id": "bts:TubularAdenocarcinoma" + "@id": "bts:Sodium-PotassiumAdenosineTriphosphataseInhibitorRX108" }, { - "@id": "bts:Rhabdomyosarcoma;MostLikelyAnEmbryonalCarcinoma" + "@id": "bts:SofituzumabVedotin" }, { - "@id": "bts:Adenocarcinoma;NOS" + "@id": "bts:Solitomab" }, { - "@id": "bts:PleuropulmonaryBlastoma" + "@id": "bts:Sonepcizumab" }, { - "@id": "bts:BasaloidSquamousCellCarcinoma" + "@id": "bts:Sonidegib" }, { - "@id": "bts:Oligodendroglioma;Anaplastic;NOS" + "@id": "bts:Sonolisib" }, { - "@id": "bts:PilocyticAstrocytoma;WHOGrade1" + "@id": "bts:Sorafenib" }, { - "@id": "bts:NotApplicable" + "@id": "bts:SorafenibTosylate" }, { - "@id": "bts:AbdominalFibromatosis" + "@id": "bts:SorghumbicolorSupplement" }, { - "@id": "bts:Hamartoma" + "@id": "bts:Sotigalimab" }, { - "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:Sotorasib" }, { - "@id": "bts:ChoroidPlexusPapilloma;NOS;ChoroidPlexusTumors" + "@id": "bts:Sotrastaurin" }, { - "@id": "bts:BurkittLymphoma;NOS" + "@id": "bts:SotrastaurinAcetate" }, { - "@id": "bts:LymphoepithelialCarcinoma" + "@id": "bts:SoyIsoflavones" }, { - "@id": "bts:Bronchiolo-AlveolarCarcinoma;Non-Mucinous" + "@id": "bts:SoyProteinIsolate" }, { - "@id": "bts:KidneyClearCellRenalCarcinoma" + "@id": "bts:Spanlecortemlocel" }, { - "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma" + "@id": "bts:SparfosateSodium" }, { - "@id": "bts:AdenocarcinomaInSituInAdenomatousPolyp" + "@id": "bts:SparfosicAcid" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant" + "@id": "bts:Spartalizumab" }, { - "@id": "bts:SmallBlueCellTumor.FavorMedulloblastoma" + "@id": "bts:Spebrutinib" }, { - "@id": "bts:BLymphoblasticLeukemia/Lymphoma;NOS" + "@id": "bts:SphericalNucleicAcidNanoparticleNU-0129" }, { - "@id": "bts:EmbryonalTumorWithMulti-LayeredRosettes" + "@id": "bts:Spirogermanium" }, { - "@id": "bts:ChronicEosinophilicLeukemia" + "@id": "bts:Spiromustine" }, { - "@id": "bts:MixedGlioma" + "@id": "bts:Spiroplatin" }, { - "@id": "bts:BasalCellAdenocarcinoma" + "@id": "bts:SplicingInhibitorH3B-8800" }, { - "@id": "bts:OlfactoryNeuroblastoma" + "@id": "bts:Spongistatin" }, { - "@id": "bts:TransitionalCellCarcinoma;NOS" + "@id": "bts:SqualamineLactate" }, { - "@id": "bts:ClearCellSarcoma;NOS" + "@id": "bts:SR-BP1/HSIInhibitorSR31747A" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma;High-Grade" + "@id": "bts:SR-T100Gel" }, { - "@id": "bts:AngiocentricGlioma" + "@id": "bts:SrcKinaseInhibitorAP23846" }, { - "@id": "bts:DiffuseMidlineGlioma;H3K27Altered;WHOGrade4" + "@id": "bts:SrcKinaseInhibitorKX2-391" }, { - "@id": "bts:Osteoblastoma;NOS" + "@id": "bts:SrcKinaseInhibitorKX2-391Ointment" }, { - "@id": "bts:MalignantNeoplasmWithRhabdomyoblasticDifferentiation;HighGrade" + "@id": "bts:SrcKinaseInhibitorM475271" }, { - "@id": "bts:MyxopapillaryEpendymoma(CNSWHOGradeII)" + "@id": "bts:Src/AblKinaseInhibitorAZD0424" }, { - "@id": "bts:MelanomaInSitu" + "@id": "bts:Src/tubulinInhibitorKX02" }, { - "@id": "bts:SecretoryCarcinoma" + "@id": "bts:SRPK1/ABCG2InhibitorSCO-101" }, { - "@id": "bts:PilocyticAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:SsRNA-basedImmunomodulatorCV8102" }, { - "@id": "bts:Rhabdomyosarcoma;FavorAlveolarType" + "@id": "bts:SSTR2-targetingProtein/DM1ConjugatePEN-221" }, { - "@id": "bts:Adenocarcinoma;MetastaticNOS" + "@id": "bts:St.John'sWort" }, { - "@id": "bts:Fibrosarcoma;NOS" + "@id": "bts:Stallimycin" }, { - "@id": "bts:Glioblastoma" + "@id": "bts:StaphylococcalEnterotoxinA" }, { - "@id": "bts:AtypicalChoroidPlexusPapilloma;ChoroidPlexusTumors" + "@id": "bts:StaphylococcalEnterotoxinB" }, { - "@id": "bts:Ganglioneuroma;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:STATInhibitorOPB-111077" }, { - "@id": "bts:DesmoplasticMelanoma;NOS" + "@id": "bts:STAT3InhibitorDSP-0337" }, { - "@id": "bts:ChoroidPlexusCarcinoma" + "@id": "bts:STAT3InhibitorOPB-31121" }, { - "@id": "bts:SoftTissueTumor;Benign" + "@id": "bts:STAT3InhibitorOPB-51602" }, { - "@id": "bts:Medulloblastoma;NOS" + "@id": "bts:STAT3InhibitorTTI-101" }, { - "@id": "bts:Glioblastoma;NOS;Medulloblastoma;NOS" + "@id": "bts:STAT3InhibitorWP1066" }, { - "@id": "bts:ResidualAstrocytoma" + "@id": "bts:Staurosporine" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(V;11q23);MLLRearranged" + "@id": "bts:STINGAgonistBMS-986301" }, { - "@id": "bts:ExtraAdrenalParaganglioma" + "@id": "bts:STINGAgonistGSK3745417" }, { - "@id": "bts:MucoepidermoidCarcinoma" + "@id": "bts:STINGAgonistIMSA101" }, { - "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" + "@id": "bts:STINGAgonistMK-1454" }, { - "@id": "bts:ChoroidPlexusPapilloma;NOS" + "@id": "bts:STINGAgonistSB11285" }, { - "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:STINGAgonistTAK-676" }, { - "@id": "bts:B-LymphoblasticLeukemia/Lymphoma;NOS" + "@id": "bts:STING-activatingCyclicDinucleotideAgonistMIW815" }, { - "@id": "bts:HodgkinLymphoma;NodularSclerosis;NOS" + "@id": "bts:STING-expressingE.coliSYNB1891" }, { - "@id": "bts:Fibroma" + "@id": "bts:Streptonigrin" }, { - "@id": "bts:Craniopharyngioma;NOS;AdamantinomatousCraniopharyngioma" + "@id": "bts:Streptozocin" }, { - "@id": "bts:T-Cell/HistiocyteRichLargeB-CellLymphoma" + "@id": "bts:StrontiumChlorideSr-89" }, { - "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade4" + "@id": "bts:SubmicronParticlePaclitaxelSterileSuspension" }, { - "@id": "bts:AcuteErythroidLeukemia" + "@id": "bts:Sugemalimab" }, { - "@id": "bts:Glioma;HistologicallyLowGrade" + "@id": "bts:Sulfatinib" }, { - "@id": "bts:MucousAdenocarcinoma" + "@id": "bts:Sulforaphane" }, { - "@id": "bts:Glioma;Malignant;Ganglioglioma;GlioneuronalAndNeuronalTumors" + "@id": "bts:Sulindac" }, { - "@id": "bts:NodularMelanoma" + "@id": "bts:Sulofenur" }, { - "@id": "bts:SynovialSarcoma;Biphasic" + "@id": "bts:SumoylationInhibitorTAK-981" }, { - "@id": "bts:Neoplasm;Metastatic" + "@id": "bts:Sunitinib" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:SunitinibMalate" }, { - "@id": "bts:Thymoma;NOS" + "@id": "bts:SuperEnhancerInhibitorGZ17-6.02" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;PosteriorFossaEpendymoma;GroupPFA" + "@id": "bts:SuperagonistInterleukin-15:Interleukin-15ReceptoralphaSu/FcFusionComplexALT-803" }, { - "@id": "bts:Desmoplastic/NodularMedulloblastoma" + "@id": "bts:SuperoxideDismutaseMimeticGC4711" }, { - "@id": "bts:PapillaryGlioneuronalTumor" + "@id": "bts:Suramin" }, { - "@id": "bts:MixedPhenotypeAcuteLeukemia;T/Myeloid;NOS" + "@id": "bts:SuraminSodium" }, { - "@id": "bts:Cholangiocarcinoma" + "@id": "bts:SurvivinAntigen" }, { - "@id": "bts:Astroblastoma;MN1-Altered.HistologicallyHigh-Grade" + "@id": "bts:SurvivinAntigenVaccineDPX-Survivac" }, { - "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated;WithHeterologousElements" + "@id": "bts:SurvivinmRNAAntagonistEZN-3042" }, { - "@id": "bts:Glioma;Malignant;High-GradeGlioma;Infant-TypeHemisphericGlioma" + "@id": "bts:Survivin-expressingCVD908ssb-TXSVNVaccine" }, { - "@id": "bts:JuvenileMyelomonocyticLeukemia;NOS" + "@id": "bts:Sustained-releaseLipidInhaledCisplatin" }, { - "@id": "bts:EmbryonalNeoplasmWithINI-1LossByImmunohistochemistry" + "@id": "bts:Sustained-releaseMitomycinCHydrogelFormulationUGN-101" }, { - "@id": "bts:MyeloidLeukemiaWithMyelodysplasia-RelatedChanges" + "@id": "bts:Sustained-releaseMitomycinCHydrogelFormulationUGN-102" }, { - "@id": "bts:PrimaryCutaneousFollicleCenterLymphoma" + "@id": "bts:SykInhibitorHMPL-523" }, { - "@id": "bts:ChoroidPlexusCarcinoma;WHOGrade3" + "@id": "bts:SynchrotopeTA2MPlasmidDNAVaccine" }, { - "@id": "bts:InfiltratingDuctCarcinomaNOS" + "@id": "bts:SynchrovaxSEMPlasmidDNAVaccine" }, { - "@id": "bts:TLymphoblasticLeukemia/Lymphoma" + "@id": "bts:SyntheticAlkaloidPM00104" }, { - "@id": "bts:Glioma;Malignant;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:SyntheticGlioblastomaMutatedTumor-specificPeptidesVaccineTherapyAPVAC2" }, { - "@id": "bts:MixedGermCellTumor;MyelodysplasticSyndromeWithExcessBlasts" + "@id": "bts:SyntheticGlioblastomaTumor-associatedPeptidesVaccineTherapyAPVAC1" }, { - "@id": "bts:ClearCellAdenocarcinoma;NOS" + "@id": "bts:SynthetichTERTDNAVaccineINO-1400" }, { - "@id": "bts:CutaneousT-CellLymphoma;NOS" + "@id": "bts:SynthetichTERTDNAVaccineINO-1401" }, { - "@id": "bts:Germinoma" + "@id": "bts:SyntheticHypericin" }, { - "@id": "bts:Neoplasm;Malignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:SyntheticLongE6Peptide-Toll-likeReceptorLigandConjugateVaccineISA201" }, { - "@id": "bts:MeningealMelanocytoma" + "@id": "bts:SyntheticLongE6/E7PeptidesVaccineHPV-01" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:SyntheticLongHPV16E6/E7PeptidesVaccineISA101b" }, { - "@id": "bts:AcutePromyelocyticLeukemia;T(15;17)(Q22;Q11-12)" + "@id": "bts:SyntheticPlumbaginPCUR-101" }, { - "@id": "bts:AlveolarSoftPartSarcoma" + "@id": "bts:T900607" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:Tabalumab" }, { - "@id": "bts:MixedEpithelioidAndSpindleCellMelanoma" + "@id": "bts:Tabelecleucel" }, { - "@id": "bts:CNSEmbryonalTumor;NOS;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" + "@id": "bts:Tacedinaline" }, { - "@id": "bts:MalignantTumor;SpindleCellType" + "@id": "bts:Tafasitamab" }, { - "@id": "bts:Glioma;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:Tagraxofusp-erzs" }, { - "@id": "bts:Glioma;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:Talabostat" }, { - "@id": "bts:EndometrioidCarcinoma;NOS" + "@id": "bts:TalabostatMesylate" }, { - "@id": "bts:LungSquamousCellCarcinoma;NOS" + "@id": "bts:Talacotuzumab" }, { - "@id": "bts:PapillaryUrothelialCarcinoma;Non-Invasive" + "@id": "bts:TalactoferrinAlfa" }, { - "@id": "bts:Neuroblastoma;UndifferentiatedType" + "@id": "bts:Taladegib" }, { - "@id": "bts:PeriostealOsteosarcoma" + "@id": "bts:Talampanel" }, { - "@id": "bts:MixedPhenotypeAcuteLeukemia;B/Myeloid;NOS" + "@id": "bts:TalaporfinSodium" }, { - "@id": "bts:InflammatoryCarcinoma" + "@id": "bts:Talazoparib" }, { - "@id": "bts:Glioblastoma;NOS" + "@id": "bts:Taletrectinib" }, { - "@id": "bts:Carcinoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:TalimogeneLaherparepvec" }, { - "@id": "bts:SquamousCellCarcinoma;NOS" + "@id": "bts:Tallimustine" }, { - "@id": "bts:HypocellularLowGradeLesion" + "@id": "bts:Talmapimod" }, { - "@id": "bts:GlioblastomaMultiforme" + "@id": "bts:Talotrexin" }, { - "@id": "bts:Pancreas-UndifferentiatedCarcinoma" + "@id": "bts:TalotrexinAmmonium" }, { - "@id": "bts:DifferentiatingNeuroblastoma" + "@id": "bts:Taltobulin" }, { - "@id": "bts:MyxoidSpindleCellTumor" + "@id": "bts:TAM/c-MetInhibitorRXDX-106" }, { - "@id": "bts:MerkelCellTumor" + "@id": "bts:Tamibarotene" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS;CNSSarcoma;CNSSarcoma;NOSOrNEC" + "@id": "bts:Taminadenant" }, { - "@id": "bts:Hemangioma;NOS" + "@id": "bts:Tamoxifen" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithAbnormalMarrowEosinophils" + "@id": "bts:TamoxifenCitrate" }, { - "@id": "bts:WellDifferentiatedNeuroendocrinceTumor;Grade1" + "@id": "bts:TamrintamabPamozirine" }, { - "@id": "bts:Ganglioglioma;Anaplastic" + "@id": "bts:Tandutinib" }, { - "@id": "bts:EpendymomaWHOGrade2" + "@id": "bts:Tanespimycin" }, { - "@id": "bts:SynovialSarcoma;NOS" + "@id": "bts:Tanibirumab" }, { - "@id": "bts:ThymicCarcinoma;NOS" + "@id": "bts:TankyraseInhibitorSTP1002" }, { - "@id": "bts:TumorCells;Malignant" + "@id": "bts:Tanomastat" }, { - "@id": "bts:PilomyxoidAstrocytoma" + "@id": "bts:Tapotoclax" }, { - "@id": "bts:PapillaryCarcinoma;ColumnarCell" + "@id": "bts:Tarenflurbil" }, { - "@id": "bts:PlexiformFibrohistiocyticTumor" + "@id": "bts:Tarextumab" }, { - "@id": "bts:Astrocytoma;NOS;AngiocentricGlioma;Low-GradeGlioma" + "@id": "bts:Tariquidar" }, { - "@id": "bts:Carcinoma;Undifferentiated;NOS" + "@id": "bts:Tasadenoturev" }, { - "@id": "bts:DermatofibrosarcomaProtuberans;NOS" + "@id": "bts:Taselisib" }, { - "@id": "bts:HighGradeGliomaWithNecrosis;WHOGrade4" + "@id": "bts:Tasidotin" }, { - "@id": "bts:Infiltratingductularcarcinoma" + "@id": "bts:Tasisulam" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges;JuvenileMyelomonocyticLeukemia;NOS" + "@id": "bts:TasisulamSodium" }, { - "@id": "bts:InfiltratingDuctAndMucinousCarcinoma" + "@id": "bts:Tasquinimod" }, { - "@id": "bts:IntraductalPapillaryCarcinoma" + "@id": "bts:Taurolidine" }, { - "@id": "bts:SerousSurfacePapillaryCarcinoma" + "@id": "bts:Tauromustine" }, { - "@id": "bts:InvasiveCarcinoma" + "@id": "bts:Taurultam" }, { - "@id": "bts:HighGradeMalignantEpithelioidNeoplasm" + "@id": "bts:TaurultamAnalogueGP-2250" }, { - "@id": "bts:FavorPilocyticAstrocytomaWithIncreasedProliferationIndices" + "@id": "bts:TavokinogeneTelseplasmid" }, { - "@id": "bts:Medulloblastoma;ClassicMorphology;CNSWHOGrade4;NON-WNT/NON-SHH;Group4SubtypeByMethylation" + "@id": "bts:Tavolimab" }, { - "@id": "bts:CompositeHodgkinAndNon-HodgkinLymphoma" + "@id": "bts:TaxaneAnalogueTPI287" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT;NOSOrNEC" + "@id": "bts:TaxaneCompound" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-TYR" + "@id": "bts:TaxolAnalogueSID530" }, { - "@id": "bts:PrimaryCutaneousCD30PositiveT-CellLymphoproliferativeDisorder" + "@id": "bts:Tazarotene" }, { - "@id": "bts:Hemangioendothelioma;NOS" + "@id": "bts:Tazemetostat" }, { - "@id": "bts:HypercellularLesionWithAtypia" + "@id": "bts:Tebentafusp" }, { - "@id": "bts:EmbryonalCarcinoma;NOS" + "@id": "bts:Teclistamab" }, { - "@id": "bts:Subependymoma;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:TecogalanSodium" }, { - "@id": "bts:GermCellTumor;Nonseminomatous" + "@id": "bts:Tefinostat" }, { - "@id": "bts:AdrenalCorticalCarcinoma" + "@id": "bts:Tegafur" }, { - "@id": "bts:OlfactoryNeurocytoma" + "@id": "bts:Tegafur-gimeracil-oteracilPotassium" }, { - "@id": "bts:LargeCellMedulloblastoma;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:Tegafur-Gimeracil-OteracilPotassium-LeucovorinCalciumOralFormulation" }, { - "@id": "bts:NuclearProteinInTestis(NUT)-AssociatedCarcinoma" + "@id": "bts:Tegafur-Uracil" }, { - "@id": "bts:Epithelial-MyoepithelialCarcinoma" + "@id": "bts:Tegavivint" }, { - "@id": "bts:SquamousCellCarcinoma;Keratinizing;NOS" + "@id": "bts:Teglarinad" }, { - "@id": "bts:Ganglioneuroma;Other;Schwannoma" + "@id": "bts:TeglarinadChloride" }, { - "@id": "bts:GlomusTumor;Malignant" + "@id": "bts:Telaglenastat" }, { - "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:TelaglenastatHydrochloride" }, { - "@id": "bts:MalignantLymphoma;Non-Hodgkin;NOS" + "@id": "bts:Telapristone" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma;NOS;CNSEmbryonalTumor;NOS" + "@id": "bts:TelapristoneAcetate" }, { - "@id": "bts:TenosynovialGiantCellTumor;NOS" + "@id": "bts:TelatinibMesylate" }, { - "@id": "bts:HistologicallyLow-GradeGlioma" + "@id": "bts:Telisotuzumab" }, { - "@id": "bts:Chordoma;NOS;Ganglioneuroblastoma" + "@id": "bts:TelisotuzumabVedotin" }, { - "@id": "bts:Ependymoma;NOS" + "@id": "bts:TelomeraseInhibitorFJ5002" }, { - "@id": "bts:InvasiveMammaryCarcinoma" - }, - { - "@id": "bts:RhabdoidTumor;Malignant" - }, - { - "@id": "bts:Medulloblastoma;ClassicHistology" + "@id": "bts:Telomerase-specificType5AdenovirusOBP-301" }, { - "@id": "bts:AdenocarcinomaInVillousAdenoma" + "@id": "bts:Teloxantrone" }, { - "@id": "bts:UndifferentiatedSarcoma" + "@id": "bts:TeloxantroneHydrochloride" }, { - "@id": "bts:PapillaryThyroidCarcinoma" + "@id": "bts:Telratolimod" }, { - "@id": "bts:RenalCellAdenocarcinoma" + "@id": "bts:Temarotene" }, { - "@id": "bts:HodgkinLymphoma;NOS" + "@id": "bts:Temoporfin" }, { - "@id": "bts:MalignantHistiocytosis" + "@id": "bts:Temozolomide" }, { - "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:Temsirolimus" }, { - "@id": "bts:SolidPseudopapillaryTumorOfOvary" + "@id": "bts:Tenalisib" }, { - "@id": "bts:AstrocyticGlioma;HistologicallyLow-Grade;MostCompatibleWithPilocyticAstrocytoma" + "@id": "bts:Tenifatecan" }, { - "@id": "bts:InflammatoryMyofibroblasticTumorWithAnAssociatedOdontogenicKeratocyst" + "@id": "bts:Teniposide" }, { - "@id": "bts:Myofibromatosis" + "@id": "bts:Tepoditamab" }, { - "@id": "bts:SmallRoundBlueCellTumor" + "@id": "bts:Tepotinib" }, { - "@id": "bts:Meningioma;Atypical;CNSWHOGrade2" + "@id": "bts:Teprotumumab" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;AdamantinomatousCraniopharyngioma;Craniopharyngioma" + "@id": "bts:Terameprocol" }, { - "@id": "bts:PilocyticAstrocytoma" + "@id": "bts:Terfluranol" }, { - "@id": "bts:LobularAndDuctalCarcinoma" + "@id": "bts:Tergenpumatucel-L" }, { - "@id": "bts:Desmoplastic/NodularMedulloblastoma(HistologicallyDefined);CNSWHOGrade4" + "@id": "bts:Teroxirone" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumorWithRhabdomyoblasticDifferentiation" + "@id": "bts:Tertomotide" }, { - "@id": "bts:TumorCells;Malignant;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" + "@id": "bts:Tesetaxel" }, { - "@id": "bts:MalignantTumor" + "@id": "bts:Tesevatinib" }, { - "@id": "bts:BrainTumor" + "@id": "bts:Tesidolumab" }, { - "@id": "bts:GastrointestinalStromalTumor;Benign" + "@id": "bts:Testolactone" }, { - "@id": "bts:RasmussenEncephalitis" + "@id": "bts:TestosteroneEnanthate" }, { - "@id": "bts:Medulloblastoma;NOS;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" + "@id": "bts:TetanusToxoidVaccine" }, { - "@id": "bts:Adenocarcinoma;NOS;Glioblastoma;NOS" + "@id": "bts:TetradecanoylphorbolAcetate" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor(Mpnst)" + "@id": "bts:Tetrahydrouridine" }, { - "@id": "bts:EmbryonalSarcoma" + "@id": "bts:TetraphenylChlorinDisulfonate" }, { - "@id": "bts:Neoplasm;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:Tetrathiomolybdate" }, { - "@id": "bts:AnaplasticLargeCellLymphoma;T-CellAndNull-CellType" + "@id": "bts:Tezacitabine" }, { - "@id": "bts:Teratoma;NOS" + "@id": "bts:TezacitabineAnhydrous" }, { - "@id": "bts:PleomorphicXanthoastrocytoma;NOS" + "@id": "bts:TGF-betaReceptor1InhibitorPF-06952229" }, { - "@id": "bts:Infiltratingductandlobularcarcinoma" + "@id": "bts:TGF-betaReceptor1KinaseInhibitorSH3051" }, { - "@id": "bts:SclerosingStromalTumor" + "@id": "bts:TGF-betaReceptor1KinaseInhibitorYL-13027" }, { - "@id": "bts:TumorCells;UncertainWhetherBenignOrMalignant" + "@id": "bts:TGFa-PE38Immunotoxin" }, { - "@id": "bts:AcuteMyeloidLeukemia;NOS;JuvenileMyelomonocyticLeukemia;NOS" + "@id": "bts:TGFbetaInhibitorLY3200882" }, { - "@id": "bts:LobularCarcinoma;NOS" + "@id": "bts:TGFbetaReceptorEctodomain-IgGFcFusionProteinAVID200" }, { - "@id": "bts:Schwannoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:Thalicarpine" }, { - "@id": "bts:Sarcoma;NOS" + "@id": "bts:Thalidomide" }, { - "@id": "bts:CNSEmbryonalTumorWithRhabdoidFeatures" + "@id": "bts:Theliatinib" }, { - "@id": "bts:GlialNeoplasm;Astrocytoma" + "@id": "bts:Theramide" }, { - "@id": "bts:Pancreas-AdenosquamousCarcinoma" + "@id": "bts:TherapeuticAngiotensin-(1-7)" }, { - "@id": "bts:MesenchymalLesion" + "@id": "bts:TherapeuticBreast/Ovarian/ProstatePeptideCancerVaccineDPX-0907" }, { - "@id": "bts:SerousAdenocarcinoma;NOS" + "@id": "bts:TherapeuticCancerVaccineATP128" }, { - "@id": "bts:Hepatoblastoma;NOS" + "@id": "bts:TherapeuticEstradiol" }, { - "@id": "bts:Astrocytoma;NOS;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:TherapeuticHydrocortisone" }, { - "@id": "bts:SexCord-GonadalStromalTumor;NOS" + "@id": "bts:TherapeuticLiverCancerPeptideVaccineIMA970A" }, { - "@id": "bts:AdenoidCysticCarcinoma" + "@id": "bts:Thiarabine" }, { - "@id": "bts:EmbryonalTumor" + "@id": "bts:Thiodiglycol" }, { - "@id": "bts:AcuteMyeloidLeukemia;T(8;21)(Q22;Q22)" + "@id": "bts:Thioguanine" }, { - "@id": "bts:SpindledAndEpithelioidTumorWithFeaturesOfIntracranialMesenchymalTumor" + "@id": "bts:ThioguanineAnhydrous" }, { - "@id": "bts:Cavernoma" + "@id": "bts:Thioinosine" }, { - "@id": "bts:MalignantTumor;SmallCellType" + "@id": "bts:Thioredoxin-1InhibitorPX-12" }, { - "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSGerminoma" + "@id": "bts:Thiotepa" }, { - "@id": "bts:LowGradeNeoplasm.FeaturesSuggestiveOfPilocyticAstrocytoma." + "@id": "bts:Thioureidobutyronitrile" }, { - "@id": "bts:Neoplasm;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:THL-P" }, { - "@id": "bts:SerousCarcinoma;NOS" + "@id": "bts:ThoriumTh227Anetumab" }, { - "@id": "bts:MetastaticSecondaryTumors" + "@id": "bts:ThoriumTh227AnetumabCorixetan" }, { - "@id": "bts:YolkSacTumor" + "@id": "bts:ThoriumTh227Anti-HER2MonoclonalAntibodyBAY2701439" }, { - "@id": "bts:MorphologicallyConsistentWithPilocyticAstrocytoma;WHOGrade1" + "@id": "bts:ThoriumTh227Anti-PSMAMonoclonalAntibodyBAY2315497" }, { - "@id": "bts:NeuroendocrineTumor;NOS" + "@id": "bts:ThreonineTyrosineKinaseInhibitorCFI-402257" }, { - "@id": "bts:MixedGermCellTumor;AcuteMegakaryoblasticLeukemia" + "@id": "bts:ThymidylateSynthaseInhibitorCX1106" }, { - "@id": "bts:JuvenileMyelomonocyticLeukemia" + "@id": "bts:ThymidylateSynthaseInhibitorDFP-11207" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithT(9;11)(P22;Q23);MLLT3-MLL" + "@id": "bts:Thymopentin" }, { - "@id": "bts:Glioma;Malignant;High-GradeGlioma;PleomorphicXanthoastrocytoma" + "@id": "bts:ThyroidExtract" }, { - "@id": "bts:PapillaryGlioneuronalTumor;WHOGrade1" + "@id": "bts:Tiazofurin" }, { - "@id": "bts:CentralNeuroblastoma" + "@id": "bts:Tidutamab" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor" + "@id": "bts:Tigapotide" }, { - "@id": "bts:MixedAdenocarcinomaAndSquamousCellCarcinoma;Pancreatobiliary-TypeCarcinoma" + "@id": "bts:Tigatuzumab" }, { - "@id": "bts:SubcutaneousPanniculitis-LikeT-CellLymphoma" + "@id": "bts:TIGITInhibitorM6223" }, { - "@id": "bts:MyofibroblasticTumor" + "@id": "bts:TIGIT-targetingAgentMK-7684" }, { - "@id": "bts:Nephroblastoma;NOS" + "@id": "bts:Tilarginine" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:Tilogotamab" }, { - "@id": "bts:MalignantMelanoma;NOS;MeningealMelanocyticNeoplasms(IncludesMelanoma);Other" + "@id": "bts:TilsotolimodSodium" }, { - "@id": "bts:Carcinoma;Metastatic;NOS" + "@id": "bts:Timonacic" }, { - "@id": "bts:FollicularCarcinoma;MinimallyInvasive" + "@id": "bts:TinEthylEtiopurpurin" }, { - "@id": "bts:Angiomyofibroblastoma" + "@id": "bts:Tinostamustine" }, { - "@id": "bts:ClassicMedulloblastoma;CNSWHOGrade4" + "@id": "bts:TinzaparinSodium" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" + "@id": "bts:TiomolibdateCholine" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-MYC" + "@id": "bts:TiomolibdateDiammonium" }, { - "@id": "bts:Astroblastoma" + "@id": "bts:TipapkinogeneSovacivec" }, { - "@id": "bts:MeningothelialMeningioma;Meningioma;Other" + "@id": "bts:Tipifarnib" }, { - "@id": "bts:PoorlyDifferentiatedChordoma" + "@id": "bts:Tipiracil" }, { - "@id": "bts:ChronicMyelogenousLeukemia" + "@id": "bts:TipiracilHydrochloride" }, { - "@id": "bts:PleomorphicSarcoma" + "@id": "bts:Tirabrutinib" }, { - "@id": "bts:SupratentorialEpendymomaCNSWHOGrade3" + "@id": "bts:Tiragolumab" }, { - "@id": "bts:LeydigCellTumor;NOS" + "@id": "bts:Tirapazamine" }, { - "@id": "bts:Adenosarcoma" + "@id": "bts:Tirbanibulin" }, { - "@id": "bts:PigmentedDermatofibrosarcomaProtuberans" + "@id": "bts:Tisagenlecleucel" }, { - "@id": "bts:Astrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:Tislelizumab" }, { - "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:TisotumabVedotin" }, { - "@id": "bts:Astrocytoma;NOS;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:Tivantinib" }, { - "@id": "bts:Myxofibrosarcoma" + "@id": "bts:Tivozanib" }, { - "@id": "bts:PrecursorT-CellLymphoblasticLeukemia" + "@id": "bts:TLCELL-12" }, { - "@id": "bts:Neurocytoma" + "@id": "bts:TLRAgonistBDB001" }, { - "@id": "bts:AdrenalCorticalTumor;NOS" + "@id": "bts:TLRAgonistBSG-001" }, { - "@id": "bts:Neoplasm;Malignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:TLRAgonistCADI-05" }, { - "@id": "bts:AcuteMyeloidLeukemia(Megakaryoblastic)WithT(1;22)(P13;Q13);RBM15-MKL1" + "@id": "bts:TLR-DirectedCationicLipid-DNAComplexJVRS-100" }, { - "@id": "bts:Neoplasm;Malignant;CNSNeuroblastoma;FOXR2-Activated;OtherCNSEmbryonalTumors" + "@id": "bts:TLR7Agonist852A" }, { - "@id": "bts:Infiltratingductandmucinouscarcinoma" + "@id": "bts:TLR7agonistBNT411" }, { - "@id": "bts:AdenocarcinomaInSitu;NOS" + "@id": "bts:TLR7AgonistLHC165" }, { - "@id": "bts:MucinousAdenocarcinoma" + "@id": "bts:TLR7/8/9AntagonistIMO-8400" }, { - "@id": "bts:Retinoblastoma;NOS" + "@id": "bts:TLR8AgonistDN1508052" }, { - "@id": "bts:AnaplasticEpendymoma" + "@id": "bts:TLR9AgonistAST-008" }, { - "@id": "bts:GermCellTumor;Nonseminomatous;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" + "@id": "bts:TM4SF1-CAR/EpCAM-CAR-expressingAutologousTCells" }, { - "@id": "bts:AcuteMonoblasticAndMonocyticLeukemia" + "@id": "bts:Tocilizumab" }, { - "@id": "bts:Hemangioblastoma;CNSWHOGrade1" + "@id": "bts:Tocladesine" }, { - "@id": "bts:AlveolarRhabdomyosarcoma" + "@id": "bts:Tocotrienol" }, { - "@id": "bts:MedullaryCarcinoma;NOS" + "@id": "bts:Tocotrienol-richFraction" }, { - "@id": "bts:AdultGranulosaCellTumorOfTestis" + "@id": "bts:Tolebrutinib" }, { - "@id": "bts:Medulloblastoma;WHOGrade4" + "@id": "bts:Toll-likeReceptor7AgonistDSP-0509" }, { - "@id": "bts:Craniopharyngioma;Adamantinomatous" + "@id": "bts:Tolnidamine" }, { - "@id": "bts:HighGradeMalignantPeripheralNerveSheathTumorWithHeterologousRhabdomyoblasticDifferentiation(MalignantTritonTumor)" + "@id": "bts:Tomaralimab" }, { - "@id": "bts:SpindleCellRhabdomyosaroma" + "@id": "bts:Tomato-SoyJuice" }, { - "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant" + "@id": "bts:Tomivosertib" }, { - "@id": "bts:EpithelioidSarcoma;NOS" + "@id": "bts:TopicalBetulinicAcid" }, { - "@id": "bts:MyoepithelialCarcinoma" + "@id": "bts:TopicalCelecoxib" }, { - "@id": "bts:MultipleMyeloma" + "@id": "bts:TopicalFluorouracil" }, { - "@id": "bts:Triple-NegativeBreastCarcinoma" + "@id": "bts:TopicalGemcitabineHydrochloride" }, { - "@id": "bts:HepatocellularCarcinoma;NOS;Nephroblastoma;NOS" + "@id": "bts:TopicalPotassiumDobesilate" }, { - "@id": "bts:Neuroblastoma;SchwannianStromaPoor;PoorlyDifferentiated;LowMKI;FavorableHistology" + "@id": "bts:TopicalTrichloroaceticAcid" }, { - "@id": "bts:SertoliCellTumor;NOS" + "@id": "bts:Topixantrone" }, { - "@id": "bts:OssifyingFibroma" + "@id": "bts:TopoisomeraseIInhibitorGenz-644282" }, { - "@id": "bts:PleomorphicLiposarcoma" + "@id": "bts:TopoisomeraseIInhibitorLMP400" }, { - "@id": "bts:AmelanoticMelanoma" + "@id": "bts:TopoisomeraseIInhibitorLMP776" }, { - "@id": "bts:Liposarcoma;NOS" + "@id": "bts:TopoisomeraseI/IIInhibitorNEV-801" }, { - "@id": "bts:Non-GerminomatousGermCellTumor" + "@id": "bts:Topoisomerase-1InhibitorLMP744" }, { - "@id": "bts:LactotrophAdenoma" + "@id": "bts:Topoisomerase-IIInhibitorRacemicXK469" }, { - "@id": "bts:TransientAbnormalMyelopoiesis" + "@id": "bts:Topoisomerase-II-betaInhibitorRacemicXK469" }, { - "@id": "bts:FavorPosteriorFossaEpendymoma;WHOGRADE3" + "@id": "bts:Topotecan" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:TopotecanHydrochloride" }, { - "@id": "bts:CarcinomaInSitu;NOS" + "@id": "bts:TopotecanHydrochlorideLiposomes" }, { - "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:TopotecanSustained-releaseEpiscleralPlaque" }, { - "@id": "bts:Ependymoma;Anaplastic" + "@id": "bts:Topsalysin" }, { - "@id": "bts:GlialNeoplasm;FavorPilocyticAstrocytoma" + "@id": "bts:TORC1/2KinaseInhibitorDS-3078a" }, { - "@id": "bts:GastrointestinalStromalTumor;NOS" + "@id": "bts:Toremifene" }, { - "@id": "bts:SerousCystadenocarcinoma;NOS" + "@id": "bts:ToremifeneCitrate" }, { - "@id": "bts:PapillaryLesionWithAtypical/HighGradeFeatures" + "@id": "bts:Toripalimab" }, { - "@id": "bts:SpinalEpendymoma;WHOGrade2" + "@id": "bts:Tosedostat" }, { - "@id": "bts:DuctalCarcinomaInSitu;NOS" + "@id": "bts:Tositumomab" }, { - "@id": "bts:InfiltratingDuctalCarcinoma" + "@id": "bts:TotalAndrogenBlockade" }, { - "@id": "bts:MixedTypeRhabdomyosarcoma" + "@id": "bts:Tovetumab" }, { - "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Mutant" + "@id": "bts:TozasertibLactate" }, { - "@id": "bts:PrecursorB-CellAcuteLymphoblasticLeukemiaWithHyperdiploidy" + "@id": "bts:TP40Immunotoxin" }, { - "@id": "bts:MesenchymalChondrosarcoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:Trabectedin" }, { - "@id": "bts:CribriformCarcinoma;NOS" + "@id": "bts:Trabedersen" }, { - "@id": "bts:MyxopapillaryEpendymoma;Anaplastic" + "@id": "bts:TRAILReceptorAgonistABBV-621" }, { - "@id": "bts:Ependymoma;Anaplastic;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:Trametinib" }, { - "@id": "bts:Astrocytoma;IDH-Mutant;WHOGrade2" + "@id": "bts:TrametinibDimethylSulfoxide" }, { - "@id": "bts:Meningioangiomatosis" + "@id": "bts:TransSodiumCrocetinate" }, { - "@id": "bts:AcuteMyeloidLeukemia;NOS;MyeloproliferativeNeoplasm;Unclassifiable" + "@id": "bts:Transdermal17beta-EstradiolGelBHR-200" }, { - "@id": "bts:Endometrioidcarcinoma;NOS" + "@id": "bts:Transdermal4-Hydroxytestosterone" }, { - "@id": "bts:AdenocarcinomaInSitu;Non-Mucinous" + "@id": "bts:TransferrinReceptor-TargetedAnti-RRM2siRNACALAA-01" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group4" + "@id": "bts:TransferrinReceptor-TargetedLiposomalp53cDNA" }, { - "@id": "bts:PapillaryCarcinoma;FollicularVariant" + "@id": "bts:Transferrin-CRM107" }, { - "@id": "bts:MetaplasticCarcinoma;NOS" + "@id": "bts:TranylcypromineSulfate" }, { - "@id": "bts:ChoroidPlexusCarcinoma;ChoroidPlexusTumors" + "@id": "bts:Trapoxin" }, { - "@id": "bts:PoorlyDifferentiatedSertoli-LeydigCellTumorWithHeterologousRhabdomyosarcomatousDifferentiation" + "@id": "bts:Trastuzumab" }, { - "@id": "bts:LowGradeGlioma" + "@id": "bts:TrastuzumabConjugateBI-CON-02" }, { - "@id": "bts:SexCordStromalTumorNOS" + "@id": "bts:TrastuzumabDeruxtecan" }, { - "@id": "bts:StromaPoor;PoorlyDifferentiatedNeuroblastomaWithLowMKI;FavorableHistology" + "@id": "bts:TrastuzumabDuocarmazine" }, { - "@id": "bts:ResidualLowGradeNeuroendocrineTumor(TypicalCarcinoid)" + "@id": "bts:TrastuzumabEmtansine" }, { - "@id": "bts:MelanoticNeuroectodermalTumor" + "@id": "bts:TrastuzumabMonomethylAuristatinF" }, { - "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:Trastuzumab-TLR7/8AgonistBDC-1001" }, { - "@id": "bts:Glioma;Malignant;AngiocentricGlioma;Low-GradeGlioma" + "@id": "bts:Trastuzumab/Hyaluronidase-oysk" }, { - "@id": "bts:MalignantLymphoma;NOS" + "@id": "bts:Trastuzumab/TesirineAntibody-drugConjugateADCT-502" }, { - "@id": "bts:MedulloblastomaWHOGrade4" + "@id": "bts:Trebananib" }, { - "@id": "bts:ChoroidPlexusPapillaryTumor" + "@id": "bts:Tremelimumab" }, { - "@id": "bts:FollicularAdenocarcinoma;WellDifferentiated;Neuroblastoma;NOS" + "@id": "bts:Treosulfan" }, { - "@id": "bts:NeuroepithelialTumor" + "@id": "bts:Tretazicar" }, { - "@id": "bts:MyelodysplasticSyndromeWithMultilineageDysplasia" + "@id": "bts:Tretinoin" }, { - "@id": "bts:PrimaryMediastinal(Thymic)LargeB-CellLymphoma" + "@id": "bts:TretinoinLiposome" }, { - "@id": "bts:MastCellLeukemia" + "@id": "bts:TriamcinoloneAcetonide" }, { - "@id": "bts:Ganglioneuroblastoma" + "@id": "bts:TriamcinoloneHexacetonide" }, { - "@id": "bts:Pheochromocytoma;NOS" + "@id": "bts:Triapine" }, { - "@id": "bts:PapillarySerousAdenocarcinoma" + "@id": "bts:TriazeneDerivativeCB10-277" }, { - "@id": "bts:MixedGermCellTumor" + "@id": "bts:TriazeneDerivativeTriN2755" }, { - "@id": "bts:LymphoidLeukemia;NOS" + "@id": "bts:Triazinate" }, { - "@id": "bts:EpendymomaNOS" + "@id": "bts:Triaziquone" }, { - "@id": "bts:SmoothMuscleTumorOfUncertainMalignantPotential" + "@id": "bts:Tributyrin" }, { - "@id": "bts:CombinedSmallCell-LargeCarcinoma" + "@id": "bts:TriciribinePhosphate" }, { - "@id": "bts:SertoliLeydigCellTumor" + "@id": "bts:TrientineHydrochloride" }, { - "@id": "bts:AnaplasticLargeCellLymphoma;ALKPositive" + "@id": "bts:Triethylenemelamine" }, { - "@id": "bts:Meningioma;Malignant" + "@id": "bts:Trifluridine" }, { - "@id": "bts:RhabdoidTumor;NOS" + "@id": "bts:TrifluridineandTipiracilHydrochloride" }, { - "@id": "bts:MerkelCellCarcinoma" + "@id": "bts:Trigriluzole" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Meningioma;Other" + "@id": "bts:Trilaciclib" }, { - "@id": "bts:Lymphoma;NOS" + "@id": "bts:Trimelamol" }, { - "@id": "bts:Gangliocytoma;NOS" + "@id": "bts:TrimericGITRL-FcOMP-336B11" }, { - "@id": "bts:Glioblastoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:TrimethylcolchicinicAcid" }, { - "@id": "bts:MucinousNon-CysticCarcinoma" + "@id": "bts:Trimetrexate" }, { - "@id": "bts:MucinousCarcinoma" + "@id": "bts:TrimetrexateGlucuronate" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:Trioxifene" }, { - "@id": "bts:Ganglioglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:TriplatinTetranitrate" }, { - "@id": "bts:HighGradeCarcinosarcoma" + "@id": "bts:TriptolideAnalog" }, { - "@id": "bts:SubependymalGiantCellAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:Triptorelin" }, { - "@id": "bts:SquamousCellCarcinoma;Metastatic;NOS" + "@id": "bts:TriptorelinPamoate" }, { - "@id": "bts:MyeloidLeukemiaAssociatedWithDownSyndrome" + "@id": "bts:Tris-acrylGelatinMicrospheres" }, { - "@id": "bts:MeningealMelanomatosis" + "@id": "bts:Tritylcysteine" }, { - "@id": "bts:NeuroepithelialTumorWithGlioneuronal-LikeFeatures" + "@id": "bts:TRKInhibitorAZD6918" }, { - "@id": "bts:SquamousCellCarcinoma;LargeCell;Nonkeratinizing;NOS" + "@id": "bts:TRKInhibitorTQB3558" }, { - "@id": "bts:Meningiomatosis;NOS" + "@id": "bts:TrkAInhibitorVMD-928" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:Trodusquemine" }, { - "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" + "@id": "bts:Trofosfamide" }, { - "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFA" + "@id": "bts:Troglitazone" }, { - "@id": "bts:CNSEmbryonalTumor;NOS" + "@id": "bts:TropomyosinReceptorKinaseInhibitorAZD7451" }, { - "@id": "bts:FavorAnaplasticEpendymoma" + "@id": "bts:Troriluzole" }, { - "@id": "bts:DiffuseGlioma" + "@id": "bts:Troxacitabine" }, { - "@id": "bts:AdamantinomatousCraniopharyngioma(CNSWHOGrade1)" + "@id": "bts:TroxacitabineNucleotideProdrugMIV-818" }, { - "@id": "bts:Medulloblastoma;ClassicVariant;WHOGrade4" + "@id": "bts:TRPM8AgonistD-3263" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:TRPV6CalciumChannelInhibitorSOR-C13" }, { - "@id": "bts:GlioneuronalTumorWithFocalIncreasedAtypia" + "@id": "bts:TSP-1MimeticABT-510" }, { - "@id": "bts:HighGradeNeuroepithelialTumor" + "@id": "bts:TSP-1MimeticFusionProteinCVX-045" }, { - "@id": "bts:SquamousCellCarcinoma;SmallCell;Nonkeratinizing" + "@id": "bts:Tubercidin" }, { - "@id": "bts:MixedPhenotypeAcuteLeukemiaWithT(V;11q23);MLLRearranged" + "@id": "bts:TubulinBindingAgentTTI-237" }, { - "@id": "bts:AcuteMyeloidLeukemia;MinimalDifferentiation" + "@id": "bts:TubulinInhibitorALB109564Dihydrochloride" }, { - "@id": "bts:FibrillaryAstrocytoma" + "@id": "bts:TubulinInhibitorALB-109564" }, { - "@id": "bts:Chordoma;NOS" + "@id": "bts:TubulinPolymerizationInhibitorAEZS112" }, { - "@id": "bts:UndifferentiatedLeukemia" + "@id": "bts:TubulinPolymerizationInhibitorCKD-516" }, { - "@id": "bts:Myofibroma" + "@id": "bts:TubulinPolymerizationInhibitorVERU-111" }, { - "@id": "bts:Neoplasm;Malignant" + "@id": "bts:Tubulin-BindingAgentSSR97225" }, { - "@id": "bts:PleomorphicXanthoastrocytoma;NOS;Low-GradeGlioma" + "@id": "bts:Tucatinib" }, { - "@id": "bts:InvasiveDuctalCarcinoma" + "@id": "bts:Tucidinostat" }, { - "@id": "bts:SubependymalGiantCellAstrocytoma" + "@id": "bts:TucotuzumabCelmoleukin" }, { - "@id": "bts:EmbryonalRhabdomyosarcomaWithAnaplasticFeatures" + "@id": "bts:Tyroserleutide" }, { - "@id": "bts:High-GradeNeuroepithelialTumor" + "@id": "bts:TyrosinasePeptide" }, { - "@id": "bts:LowGradeGlioneuronalTumor" + "@id": "bts:Tyrosinase-KLH" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:Tyrosinase:146-156Peptide" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithoutMaturation" + "@id": "bts:TyrosineKinaseInhibitor" }, { - "@id": "bts:AdenocarcinomaWithMixedSubtypes" + "@id": "bts:TyrosineKinaseInhibitorOSI-930" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHyperdiploidy" + "@id": "bts:TyrosineKinaseInhibitorSU5402" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS" + "@id": "bts:TyrosineKinaseInhibitorTL-895" }, { - "@id": "bts:Hemangiosarcoma" + "@id": "bts:TyrosineKinaseInhibitorXL228" }, { - "@id": "bts:Paraganglioma;NOS" + "@id": "bts:UAEInhibitorTAK-243" }, { - "@id": "bts:Medulloblastoma;Nodular/DesmoplasticWithAnaplastic/LargeCellFeatures;Non-WNT/Non-SHH;WHOGrade4" + "@id": "bts:Ubenimex" }, { - "@id": "bts:SignetRingCellCarcinoma" + "@id": "bts:UbidecarenoneNanodispersionBPM31510n" }, { - "@id": "bts:SpindleCellMelanoma;NOS" + "@id": "bts:Ublituximab" }, { - "@id": "bts:LobularAdenocarcinoma" + "@id": "bts:Ulinastatin" }, { - "@id": "bts:UndiagnosedSpindleCellTumor" + "@id": "bts:Ulixertinib" }, { - "@id": "bts:PilocyticAstrocytoma;WHOGrade1;KIAA1549-BRAFFusion" + "@id": "bts:Ulocuplumab" }, { - "@id": "bts:Meningioma" + "@id": "bts:Umbralisib" }, { - "@id": "bts:HepatosplenicT-CellLymphoma;PrecursorCellLymphoblasticLeukemia;NOS" + "@id": "bts:UncariatomentosaExtract" }, { - "@id": "bts:MesenchymalChondrosarcoma" + "@id": "bts:Upamostat" }, { - "@id": "bts:AnaplasticGanglioglioma" + "@id": "bts:Upifitamab" }, { - "@id": "bts:Osteosarcoma;NOS" + "@id": "bts:Uproleselan" }, { - "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:Uprosertib" }, { - "@id": "bts:EpendymomaWHOGrade3" + "@id": "bts:Urabrelimab" }, { - "@id": "bts:LungAdenocarcinoma;NOS" + "@id": "bts:UracilOintment" }, { - "@id": "bts:LymphoproliferativeDisorder;NOS" + "@id": "bts:Urelumab" }, { - "@id": "bts:AtypicalLymphoidInfiltrate" + "@id": "bts:Uroacitides" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:Urokinase-DerivedPeptideA6" }, { - "@id": "bts:GenitalRhabdomyoma" + "@id": "bts:UrsolicAcid" }, { - "@id": "bts:ChondroblasticOsteosarcoma" + "@id": "bts:USP14/UCHL5InhibitorVLX1570" }, { - "@id": "bts:Neuroepithelioma;NOS" + "@id": "bts:Utomilumab" }, { - "@id": "bts:MalignantEpithelioidAndMyxoidNeoplasm" + "@id": "bts:Uzansertib" }, { - "@id": "bts:Pancreatoblastoma" + "@id": "bts:V930Vaccine" }, { - "@id": "bts:Nephroblastoma(WilmsTumor)" + "@id": "bts:Vaccine-SensitizedDrainingLymphNodeCells" }, { - "@id": "bts:MalignantGlioma" + "@id": "bts:Vacciniummyrtillus/Macleayacordata/EchinaceaangustifoliaExtractGranules" }, { - "@id": "bts:EwingSarcoma" + "@id": "bts:Vactosertib" }, { - "@id": "bts:AtypicalSmoothMuscleNeoplasm" + "@id": "bts:VadacabtageneLeraleucel" }, { - "@id": "bts:AcuteMyelomonocyticLeukemia;NOS" + "@id": "bts:VadastuximabTalirine" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:Vadimezan" }, { - "@id": "bts:EpithelialTumor;Benign" + "@id": "bts:Valecobulin" }, { - "@id": "bts:FavorTeratoma" + "@id": "bts:Valemetostat" }, { - "@id": "bts:MalignantNeoplasmOfProstate" + "@id": "bts:ValproicAcid" }, { - "@id": "bts:Non-ClearCellRenalCellCarcinoma" + "@id": "bts:Valrubicin" }, { - "@id": "bts:Meningioma;NOS;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" + "@id": "bts:Valspodar" }, { - "@id": "bts:MelanoticSchwannoma;Other" + "@id": "bts:Vandetanib" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;WNT-Activated" + "@id": "bts:Vandetanib-elutingRadiopaqueBeadBTG-002814" }, { - "@id": "bts:CarcinosarcomaNOS" + "@id": "bts:VandortuzumabVedotin" }, { - "@id": "bts:Plasmacytoma;Extramedullary" + "@id": "bts:Vantictumab" }, { - "@id": "bts:InfantileFibrosarcoma" + "@id": "bts:Vanucizumab" }, { - "@id": "bts:Glioma;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:Vapreotide" }, { - "@id": "bts:CNSPrimativeNeuroectodermalTumor(PNET)" + "@id": "bts:Varlilumab" }, { - "@id": "bts:Infiltratingductcarcinoma;NOS" + "@id": "bts:Varlitinib" }, { - "@id": "bts:PrecursorB-CellLymphoblasticLeukemia" + "@id": "bts:VarlitinibTosylate" }, { - "@id": "bts:SquamousCellCarcinomaInSitu;NOS" + "@id": "bts:VascularDisruptingAgentBNC105" }, { - "@id": "bts:AcuteMyeloidLeukemia;T(16;16)(P13;Q11)" + "@id": "bts:VascularDisruptingAgentBNC105P" }, { - "@id": "bts:PapillaryTransitionalCellCarcinoma" + "@id": "bts:VascularDisruptingAgentZD6126" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:Vatalanib" }, { - "@id": "bts:Low-GradeGlioneuronal;NeuronalTumor" + "@id": "bts:VatalanibSuccinate" }, { - "@id": "bts:CombinedSmallCell-Adenocarcinoma" + "@id": "bts:Vecabrutinib" }, { - "@id": "bts:HepatocellularCarcinoma;NOS" + "@id": "bts:Vector-peptideConjugatedPaclitaxel" }, { - "@id": "bts:SpindleCellCarcinoma;NOS" + "@id": "bts:Vedolizumab" }, { - "@id": "bts:Carcinoma;DiffuseType" + "@id": "bts:VEGFInhibitorPTC299" }, { - "@id": "bts:LentiginousMelanocyticNevus" + "@id": "bts:VEGF/HGF-targetingDARPinMP0250" }, { - "@id": "bts:Glioma;Malignant;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" + "@id": "bts:VEGFRInhibitorKRN951" }, { - "@id": "bts:SolitaryFibrousTumor;NOS" + "@id": "bts:VEGFR-2DNAVaccineVXM01" }, { - "@id": "bts:Glioma;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:VEGFR/FGFRInhibitorODM-203" }, { - "@id": "bts:GranulosaCellTumor;Malignant" + "@id": "bts:VEGFR/PDGFRTyrosineKinaseInhibitorTAK-593" }, { - "@id": "bts:Ganglioneuroma;MaturingType;FavorableHistology" + "@id": "bts:VEGFR2TyrosineKinaseInhibitorPF-00337210" }, { - "@id": "bts:InvasiveLobularCarcinoma" + "@id": "bts:VEGFR2/PDGFR/c-Kit/Flt-3InhibitorSU014813" }, { - "@id": "bts:Ganglioglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:Veliparib" }, { - "@id": "bts:BlandMyofibroblasticProliferationWithAssociatedFloridLymphoplasmacyticInflammation" + "@id": "bts:Veltuzumab" }, { - "@id": "bts:Medulloblastoma" + "@id": "bts:Vemurafenib" }, { - "@id": "bts:Hepatoblastoma" + "@id": "bts:Venetoclax" }, { - "@id": "bts:LowGradeGlial/GlioneuronalTumor" + "@id": "bts:Verapamil" }, { - "@id": "bts:AtypicalTeratoidRhabdoidTumor;CNSWHOGrade4" + "@id": "bts:VerpasepCaltespen" }, { - "@id": "bts:Oligoastrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:Verubulin" }, { - "@id": "bts:DiffuseGlioma;FavorHighGrade" + "@id": "bts:VerubulinHydrochloride" }, { - "@id": "bts:ReactiveConnectiveTissue" + "@id": "bts:Vesencumab" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Mutant" + "@id": "bts:Vesigenurtucel-L" }, { - "@id": "bts:TumorCells;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:VGEFMixed-BackboneAntisenseOligonucleotideGEM220" }, { - "@id": "bts:Glioma;Malignant;MalignantPeripheralNerveSheathTumor;NOS" + "@id": "bts:VGEFR/c-kit/PDGFRTyrosineKinaseInhibitorXL820" }, { - "@id": "bts:Melanoma;NOS" + "@id": "bts:Viagenpumatucel-L" }, { - "@id": "bts:MalignantMelanocyticNeoplasm" + "@id": "bts:Vibecotamab" }, { - "@id": "bts:ChronicMyelogenousLeukemia;BCR/ABLPositive" + "@id": "bts:Vibostolimab" }, { - "@id": "bts:VascularLesion;ConsistentWithHemangioma" + "@id": "bts:Vilaprisan" }, { - "@id": "bts:SmallCellNeuroendocrineCarcinoma" + "@id": "bts:Vinblastine" }, { - "@id": "bts:MedullaryCarcinoma" + "@id": "bts:VinblastineSulfate" }, { - "@id": "bts:AnaplasticAstrocytoma;IDH-Wildtype;Glioblastoma;IDHWildtype" + "@id": "bts:Vincristine" }, { - "@id": "bts:Rhabdomyosarcoma;EmbryonalSubtype" + "@id": "bts:VincristineLiposomal" }, { - "@id": "bts:MedulloblastomaByMorphology;NON-WNTByImmunohistochemistry" + "@id": "bts:VincristineSulfate" }, { - "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;High-GradeGlioma" + "@id": "bts:VincristineSulfateLiposome" }, { - "@id": "bts:Ganglioglioma;NOS" + "@id": "bts:Vindesine" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor;AngiocentricGlioma;Low-GradeGlioma" + "@id": "bts:Vinepidine" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:Vinflunine" }, { - "@id": "bts:AngiomatoidFibrousHistiocytoma" + "@id": "bts:VinflunineDitartrate" }, { - "@id": "bts:MicropapillaryCarcinoma;NOS" + "@id": "bts:Vinfosiltine" }, { - "@id": "bts:InfiltratingLobularCarcinoma;NOS" + "@id": "bts:Vinorelbine" }, { - "@id": "bts:GastrointestinalStromalTumor" + "@id": "bts:VinorelbineTartrate" }, { - "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;Group4" + "@id": "bts:VinorelbineTartrateEmulsion" }, { - "@id": "bts:Craniopharyngioma" + "@id": "bts:VinorelbineTartrateOral" }, { - "@id": "bts:Sertoli-LeydigCellTumor;IntermediateDifferentiation;WithHeterologousElements" + "@id": "bts:Vintafolide" }, { - "@id": "bts:AcuteMyeloidLeukemia;Inv(16)(P13;Q22)" + "@id": "bts:Vinzolidine" }, { - "@id": "bts:Subependymoma" + "@id": "bts:VinzolidineSulfate" }, { - "@id": "bts:GliomatosisCerebri" + "@id": "bts:Virulizin" }, { - "@id": "bts:Infiltratinglobularcarcinoma;NOS" + "@id": "bts:Vismodegib" }, { - "@id": "bts:Schwannoma;NOS" + "@id": "bts:Vistusertib" }, { - "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:VitaminD3AnalogueILX23-7553" }, { - "@id": "bts:Dysplasia" + "@id": "bts:VitaminECompound" }, { - "@id": "bts:MalignantRhabdoidTumor" + "@id": "bts:Vitespen" }, { - "@id": "bts:BlueNevus;Malignant" + "@id": "bts:VLP-encapsulatedTLR9AgonistCMP-001" }, { - "@id": "bts:Adenocarcinoma;PancreatobiliaryType" + "@id": "bts:VocimageneAmiretrorepvec" }, { - "@id": "bts:Ependymoma;NOS;ChoroidPlexusTumors;ChoroidPlexusPapilloma" + "@id": "bts:Vofatamab" }, { - "@id": "bts:Ganglioneuroblastoma;NodularType" + "@id": "bts:Volasertib" }, { - "@id": "bts:GranulosaCellTumor;Juvenile" + "@id": "bts:Volociximab" }, { - "@id": "bts:JuvenileGranulosaCellTumor" + "@id": "bts:Vonlerolizumab" }, { - "@id": "bts:ChronicMyeloidLeukemia;BCR-ABL1-Positive" + "@id": "bts:Vopratelimab" }, { - "@id": "bts:Head&NeckSquamousCellCarcinoma" + "@id": "bts:Vorasidenib" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" + "@id": "bts:Vorinostat" }, { - "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:Vorolanib" }, { - "@id": "bts:Ganglioglioma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:VorsetzumabMafodotin" }, { - "@id": "bts:IntraductalPapillaryMucinousNeoplasmWithAnAssociatedInvasiveCarcinoma" + "@id": "bts:Vosaroxin" }, { - "@id": "bts:AdrenalCorticalAdenoma;NOS" + "@id": "bts:Vosilasarm" }, { - "@id": "bts:Adenocarcinoma;PancreatobiliaryType;Pancreatobiliary-TypeCarcinoma" + "@id": "bts:Voxtalisib" }, { - "@id": "bts:Lipoblastomatosis" + "@id": "bts:Vulinacimab" }, { - "@id": "bts:CentralNeurocytoma;GlioneuronalAndNeuronalTumors" + "@id": "bts:WarfarinSodium" }, { - "@id": "bts:Control" + "@id": "bts:Wee1InhibitorZN-c3" }, { - "@id": "bts:HHV8PositiveDiffuseLargeB-CellLymphoma" + "@id": "bts:Wee1KinaseInhibitorDebio0123" }, { - "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma;PleomorphicXanthoastrocytoma" + "@id": "bts:WhiteCarrot" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;Group4" + "@id": "bts:WntSignalingInhibitorSM04755" }, { - "@id": "bts:LargeCellMedulloblastoma" + "@id": "bts:WntSignalingPathwayInhibitorSM08502" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(12;21)(P13;Q22);TEL-AML1(ETV6-RUNX1)" + "@id": "bts:Wnt-5aMimicHexapeptideFoxy-5" }, { - "@id": "bts:CentralOsteosarcoma;NOS" + "@id": "bts:Wobe-MugosE" }, { - "@id": "bts:Chordoma" + "@id": "bts:WT1PeptideVaccineOCV-501" }, { - "@id": "bts:PilocyticAstrocytoma;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" + "@id": "bts:WT1PeptideVaccineWT2725" }, { - "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:WT1Protein-derivedPeptideVaccineDSP-7888" }, { - "@id": "bts:DermatofibrosarcomaProtuberans;Fibrosarcomatous" + "@id": "bts:WT1-A10/AS01BImmunotherapeuticGSK2130579A" }, { - "@id": "bts:NeuroendocrineCarcinoma;NOS" + "@id": "bts:WT1/PSMA/hTERT-encodingPlasmidDNAINO-5401" }, { - "@id": "bts:Glioma;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:Xanthohumol" }, { - "@id": "bts:Oligodendroglioma;NOS" + "@id": "bts:XBP1-US/XBP1-SP/CD138/CS1MultipeptideVaccinePVX-410" }, { - "@id": "bts:AcuteMonoblasticLeukemia" + "@id": "bts:Xeloda" }, { - "@id": "bts:Glioma;Malignant;Low-GradeGlioma;PolymorphousLow-GradeNeuroepithelialTumorOfTheYoung" + "@id": "bts:Xentuzumab" }, { - "@id": "bts:Neoplasm" + "@id": "bts:Xevinapant" }, { - "@id": "bts:Medulloepithelioma;NOS" + "@id": "bts:XiaoaiJieduDecoction" }, { - "@id": "bts:Oligodendroglioma;NOS;High-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" + "@id": "bts:XIAPAntisenseOligonucleotideAEG35156" }, { - "@id": "bts:NotReported" + "@id": "bts:XIAP/cIAP1AntagonistASTX660" }, { - "@id": "bts:AggressiveFibromatosis" + "@id": "bts:Xiliertinib" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges" + "@id": "bts:Xisomab3G3" }, { - "@id": "bts:LangerhansCellHistiocytosis;Disseminated" + "@id": "bts:XPO1InhibitorSL-801" }, { - "@id": "bts:Glioma;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:Y90MonoclonalAntibodyCC49" }, { - "@id": "bts:Oligoastrocytoma;NOS" + "@id": "bts:Y90MonoclonalAntibodyHMFG1" }, { - "@id": "bts:UndifferentiatedNasopharyngealCarcinoma" + "@id": "bts:Y90MonoclonalAntibodyLym-1" }, { - "@id": "bts:SmallCellCarcinoma;NOS" + "@id": "bts:Y90MonoclonalAntibodym170" }, { - "@id": "bts:Chordoma;NOS;Chordoma(IncludingPoorlyDifferentiatedChordoma);Other" + "@id": "bts:Y90MonoclonalAntibodyM195" }, { - "@id": "bts:Mesothelioma;Biphasic;Malignant;BLymphoblasticLeukemia/Lymphoma;NOS" + "@id": "bts:YangYinFuZheng" }, { - "@id": "bts:CentralNeurocytoma;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" + "@id": "bts:YangzhengXiaojiExtract" }, { - "@id": "bts:UndifferentiatedSmallRoundCellSarcoma" + "@id": "bts:Yiqi-yangyin-jieduHerbalDecoction" }, { - "@id": "bts:Rhabdomyoma;NOS" + "@id": "bts:YttriumY90Anti-CD19MonoclonalAntibodyBU12" }, { - "@id": "bts:Glioblastoma;IDHWildtype" + "@id": "bts:YttriumY90Anti-CD45MonoclonalAntibodyAHN-12" }, { - "@id": "bts:Neoplasm;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:YttriumY90Anti-CD45MonoclonalAntibodyBC8" }, { - "@id": "bts:TherapyRelatedMyeloidNeoplasm" + "@id": "bts:YttriumY90Anti-CDH3MonoclonalAntibodyFF-21101" }, { - "@id": "bts:AcuteMyeloidLeukemia;NOS" + "@id": "bts:YttriumY90Anti-CEAMonoclonalAntibodycT84.66" }, { - "@id": "bts:MalignantTumor;SpindleCellType;CNSSarcoma;CNSSarcoma;NOSOrNEC" + "@id": "bts:YttriumY90Basiliximab" }, { - "@id": "bts:LeydigCellTumor;Benign" + "@id": "bts:YttriumY90Colloid" }, { - "@id": "bts:MyelodysplasticSyndromeWithSingleLineageDysplasia" + "@id": "bts:YttriumY90Daclizumab" }, { - "@id": "bts:Germinoma;CNSGermCellTumors;CNSGerminoma" + "@id": "bts:YttriumY90DOTAAnti-CEAMonoclonalAntibodyM5A" }, { - "@id": "bts:GlialTumor" + "@id": "bts:YttriumY90GlassMicrospheres" }, { - "@id": "bts:SynovialSarcoma;SpindleCell" + "@id": "bts:YttriumY90MonoclonalAntibodyB3" }, { - "@id": "bts:SpindleCellMelanoma;TypeB" + "@id": "bts:YttriumY90MonoclonalAntibodyBrE-3" }, { - "@id": "bts:FamilialAdenomatousPolyposis" + "@id": "bts:YttriumY90MonoclonalAntibodyHu3S193" }, { - "@id": "bts:GiantCellGlioblastoma" + "@id": "bts:YttriumY90MonoclonalAntibodyMN-14" }, { - "@id": "bts:Teratocarcinoma" + "@id": "bts:YttriumY90ResinMicrospheres" }, { - "@id": "bts:Adenoma;NOS" + "@id": "bts:YttriumY90TabituximabBarzuxetan" }, { - "@id": "bts:AcralLentiginousMelanoma;Malignant" + "@id": "bts:YttriumY90-DOTA-Biotin" }, { - "@id": "bts:CarcinomaNOS" + "@id": "bts:YttriumY90-DOTA-di-HSGPeptideIMP-288" }, { - "@id": "bts:PapillaryCarcinoma;NOS" + "@id": "bts:YttriumY90-Edotreotide" }, { - "@id": "bts:PoorlyDifferentiatedNeuroblastoma" + "@id": "bts:YttriumY90-labeledAnti-FZD10MonoclonalAntibodyOTSA101" }, { - "@id": "bts:SolidPseudopapillaryNeoplasmOfPancreas" + "@id": "bts:YttriumY-90ClivatuzumabTetraxetan" }, { - "@id": "bts:NasopharyngealCarcinoma" + "@id": "bts:YttriumY-90EpratuzumabTetraxetan" }, { - "@id": "bts:AdenocarcinomaInAdenomatousPolyposisColi" + "@id": "bts:YttriumY-90IbritumomabTiuxetan" }, { - "@id": "bts:Leiomyoma;NOS" + "@id": "bts:YttriumY-90TacatuzumabTetraxetan" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma;NOS" + "@id": "bts:Yttrium-90PolycarbonateBrachytherapyPlaque" }, { - "@id": "bts:ChoroidPlexusPapilloma;NOS;OtherCNSEmbryonalTumors;Pineoblastoma" + "@id": "bts:Z-EndoxifenHydrochloride" }, { - "@id": "bts:TumorCells;Benign" + "@id": "bts:Zalcitabine" }, { - "@id": "bts:MarginalZoneB-CellLymphoma;NOS" + "@id": "bts:Zalifrelimab" }, { - "@id": "bts:TumorCells;Malignant;Other;PinealParenchymalTumorOfIntermediateDifferentiation" + "@id": "bts:Zalutumumab" }, { - "@id": "bts:Pinealoma" + "@id": "bts:Zandelisib" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;INI1/SMARCB1-Altered;WHOGrade4" + "@id": "bts:Zanidatamab" }, { - "@id": "bts:MetastaticSignetRingCellCarcinoma" + "@id": "bts:Zanolimumab" }, { - "@id": "bts:Astrocytoma" + "@id": "bts:Zanubrutinib" }, { - "@id": "bts:DesmoplasticInfantileAstrocytoma" + "@id": "bts:Zebularine" }, { - "@id": "bts:MalignantSarcomaWithDICER1Mutation;FavorPrimaryIntracranialSarcoma;DICER1Mutant" + "@id": "bts:Zelavespib" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHypodiploidy" + "@id": "bts:Zibotentan" }, { - "@id": "bts:ColonAdenocarcinoma" + "@id": "bts:ZincFingerNucleaseZFN-603" }, { - "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:ZincFingerNucleaseZFN-758" }, { - "@id": "bts:ProliferativeDermalLesionInCongenitalNevus" + "@id": "bts:Zinostatin" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;WNT-Activated" + "@id": "bts:ZinostatinStimalamer" }, { - "@id": "bts:ArteriovenousMalformation" + "@id": "bts:ZirconiumZr89Panitumumab" }, { - "@id": "bts:Glioma;Malignant" + "@id": "bts:Ziv-Aflibercept" }, { - "@id": "bts:AcinarCellCarcinoma" + "@id": "bts:Zolbetuximab" }, { - "@id": "bts:SpinalEpendymoma;HistologicallyLowGrade(CNSWHOGrade2)" + "@id": "bts:ZoledronicAcid" }, { - "@id": "bts:Leukemia;NOS" + "@id": "bts:ZoptarelinDoxorubicin" }, { - "@id": "bts:Hemangioblastoma;Other" + "@id": "bts:Zorifertinib" }, { - "@id": "bts:High-GradeSerousCarcinoma" + "@id": "bts:Zorubicin" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group3" + "@id": "bts:ZorubicinHydrochloride" }, { - "@id": "bts:SchwannianStromaPoorPeripheralNeuroblasticTumor;ConsistentWithNeuroblastoma" + "@id": "bts:Zotatifin" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithMutatedCEBPA" + "@id": "bts:ZotiraciclibCitrate" }, { - "@id": "bts:ParostealOsteosarcoma" + "@id": "bts:ZuclomipheneCitrate" }, { - "@id": "bts:EpithelioidMesothelioma;Malignant" + "@id": "bts:Unknown" }, { - "@id": "bts:Meningioma;NOS" - }, + "@id": "bts:NotReported" + } + ], + "sms:displayName": "Individual Therapeutic Agent", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualDaystoTreatment", + "@type": "rdfs:Class", + "rdfs:comment": "Number of days between the date used for index and the date the treatment started.", + "rdfs:label": "IndividualDaystoTreatment", + "rdfs:subClassOf": [ { - 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"@id": "bts:Neoplasm;Malignant;UncertainWhetherPrimaryOrMetastatic" + "@id": "bts:NotApplicable" }, { - "@id": "bts:DesmoplasticSmallRoundCellTumor" + "@id": "bts:NotEvaluable" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma" + "@id": "bts:NotReported" }, { - "@id": "bts:LangerhansCellHistiocytosis" + "@id": "bts:PartialResponse" }, { - "@id": "bts:GlialNeoplasmShowingHigh-GradeFeatures" + "@id": "bts:PersistentDisease" }, { - "@id": "bts:Oligodendroglioma" + "@id": "bts:ProgressiveDisease" }, { - "@id": "bts:MalignantMelanoma;NOS" + "@id": "bts:StableDisease" }, { - "@id": "bts:MyxopapillaryEpendymoma;Ependymoma" - }, + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Individual Treatment Response", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualDaystoLastFollowup", + "@type": "rdfs:Class", + "rdfs:comment": "Number of days between the dates used for index and last follow-up", + "rdfs:label": "IndividualDaystoLastFollowup", + "rdfs:subClassOf": [ { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;NOSOrNEC" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual Days to Last Followup", + "sms:required": "sms:false", + "sms:validationRules": [ + "int" + ] + }, + { + "@id": "bts:IndividualRecurrenceStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment.", + "rdfs:label": "IndividualRecurrenceStatus", + "rdfs:subClassOf": [ { - "@id": "bts:Neoplasm;Malignant;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Adenocarcinoma" + "@id": "bts:Yes" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(9;22)(Q34;Q11.2);BCR-ABL1" + "@id": "bts:Unknown" }, { - "@id": "bts:Hemangioendothelioma;Malignant" + "@id": "bts:NotReported" }, { - "@id": "bts:ChoroidPlexusNeoplasm" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Craniopharyngioma;Adamantinomatous;AdamantinomatousCraniopharyngioma" + "@id": "bts:NotAllowedtoCollect" }, { - "@id": "bts:Pinealoblastoma" + "@id": "bts:No" }, { - "@id": "bts:LargeCellMedulloblastoma;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" - }, + "@id": "bts:Censored" + } + ], + "sms:displayName": "Individual Recurrence Status", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualDaysToRecurrence", + "@type": "rdfs:Class", + "rdfs:comment": "Number of days between the date used for index and the date the patient's disease recurred", + "rdfs:label": "IndividualDaysToRecurrence", + "rdfs:subClassOf": [ { - "@id": "bts:SpindleCellSarcoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual Days To Recurrence", + "sms:required": "sms:false", + "sms:validationRules": [ + "int" + ] + }, + { + "@id": "bts:IndividualDaystoLastKnownDiseaseStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days.", + "rdfs:label": "IndividualDaystoLastKnownDiseaseStatus", + "rdfs:subClassOf": [ { - 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}, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Ependymoma;NOS;AtypicalMeningioma" + "@id": "bts:Biochemicalevidenceofdiseasewithoutstructuralcorrelate" }, { - "@id": "bts:Oligodendroglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:TumorFree" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor" + "@id": "bts:Unknown" }, { - "@id": "bts:Glioma;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" + "@id": "bts:WithTumor" }, { - "@id": "bts:Sertoli-LeydigCellTumorOfIntermediateDifferentiation;NOS" + "@id": "bts:NotReported" }, { - "@id": "bts:DesmoplasticNodularMedulloblastoma" + "@id": "bts:NotApplicable" }, { - "@id": "bts:PapillaryMicrocarcinoma" + "@id": "bts:NotAllowedToCollect" }, { - "@id": "bts:Craniopharyngioma;NOS" + "@id": "bts:DistantMetastasis" }, { - "@id": "bts:LowGradeGlialNeoplasm" + "@id": "bts:LocalizedDisease" }, { - "@id": "bts:Leiomyosarcoma;NOS" + "@id": "bts:RegionalDisease" }, { - "@id": "bts:FollicularAdenocarcinoma;NOS" + "@id": "bts:NewTumorEvent" } ], - "sms:displayName": "Model Primary Diagnosis", - "sms:required": "sms:true", + "sms:displayName": "Individual Last Known Disease Status", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ModelPrimarySite", + "@id": "bts:IndividualVitalStatus", "@type": "rdfs:Class", - "rdfs:comment": "Primary site in the body associated with the primary diagnosis.", - "rdfs:label": "ModelPrimarySite", + "rdfs:comment": "Text term that describes the patient's current vital status.", + "rdfs:label": "IndividualVitalStatus", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -286908,753 +290998,2735 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Abdomen" - }, - { - "@id": "bts:AbdominalWall" - }, - { - "@id": "bts:Acetabulum" - }, - { - "@id": "bts:AdjacentOrgan" - }, - { - "@id": "bts:AdrenalGland" - }, - { - "@id": "bts:Anal/Perianal" + "@id": "bts:Unspecified" }, { - "@id": "bts:AnkleJoint" + "@id": "bts:Unknown" }, { - 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schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ModelId", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Model_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:ModelAge", + "@type": "rdfs:Class", + "rdfs:comment": "The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)", + "rdfs:label": "ModelAge", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Model Age", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:ModelAgeUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The unit corresponding to the age provided for this model.", + "rdfs:label": "ModelAgeUnit", + "rdfs:subClassOf": [ + { + "@id": 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], + "sms:displayName": "Model Sex", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ModelDiseaseType", + "@type": "rdfs:Class", + "rdfs:comment": "The tumor type associated with the model.", + "rdfs:label": "ModelDiseaseType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:AcinarCellNeoplasms" }, { - "@id": "bts:SplenicHilarNodes" + "@id": "bts:AdenomasandAdenocarcinomas" }, { - "@id": "bts:Sternum" + "@id": "bts:AdnexalandSkinAppendageNeoplasms" }, { - "@id": "bts:Sternum/ChestWall" + "@id": "bts:BasalCellNeoplasms" }, { - "@id": "bts:Stomach" + "@id": "bts:BloodVesselTumors" }, { - "@id": "bts:SuperiorLimbandShoulder" + "@id": "bts:ComplexMixedandStromalNeoplasms" }, { - "@id": "bts:SuperiorMaxilla" + "@id": "bts:Cystic;MucinousandSerousNeoplasms" }, { - "@id": "bts:SupraclavicularNodes" + "@id": "bts:DuctalandLobularNeoplasms" }, { - "@id": "bts:SuprasellarPituitary" + "@id": "bts:EpithelialNeoplasms;NOS" }, { - "@id": "bts:Talus" + "@id": "bts:FibroepithelialNeoplasms" }, { - "@id": "bts:TarsalBone" + "@id": "bts:FibromatousNeoplasms" }, { - "@id": "bts:TemporalBone" + "@id": "bts:GermCellNeoplasms" }, { - "@id": "bts:TemporalCortex" + "@id": "bts:GiantCellTumors" }, { - "@id": "bts:TemporalLobe" + "@id": "bts:Gliomas" }, { - "@id": "bts:Testis" + "@id": "bts:GranularCellTumorsandAlveolarSoftPartSarcomas" }, { - "@id": "bts:Thalamus" + "@id": "bts:ImmunoproliferativeDiseases" }, { - "@id": "bts:Thigh" + "@id": "bts:Leukemias" }, { - "@id": "bts:ThirdVentricle" + "@id": "bts:LipomatousNeoplasms" }, { - "@id": "bts:ThoracicSpinalCord" + "@id": "bts:LymphaticVesselTumors" }, { - "@id": "bts:ThoracicVertebra" + "@id": "bts:MastCellNeoplasm" }, { - "@id": "bts:Thorax" + "@id": "bts:Meningiomas" }, { - "@id": "bts:Thymus" + "@id": "bts:MesothelialNeoplasms" }, { - "@id": "bts:Thyroid" + "@id": 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+ "rdfs:comment": "Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).", + "rdfs:label": "ModelPrimaryDiagnosis", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -287665,19899 +293737,19317 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:AbdominalAorta" + "@id": "bts:HeadandNeckSquamousCellCarcinoma" }, { - "@id": "bts:AbdominalEsophagus" + "@id": "bts:Astroblastoma;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:AbdominalMuscle" + "@id": "bts:Medulloblastoma;HypercellularLesionWithMarkedAtypia" }, { - "@id": "bts:AbdominalSkin" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;NOSOrNEC" }, { - "@id": "bts:AbdominalWall" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:AbducensNerve" + "@id": "bts:Neuroma;NOS" }, { - "@id": "bts:AccessoryNerve" + 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}, { - "@id": "bts:BileDuct" + "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;Infant-TypeHemisphericGlioma" }, { - "@id": "bts:BiliaryTract" + "@id": "bts:Rhabdomyosarcoma;NOS" }, { - "@id": "bts:Bladder" + "@id": "bts:MucinousAdenocarcinoma;EndocervicalType" }, { - "@id": "bts:BladderNeck" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:BladderTrigone" + "@id": "bts:Ganglioglioma;NOS;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:Blood" + "@id": "bts:DermoidCyst" }, { - "@id": "bts:BloodVessel" + "@id": "bts:AdenocarcinomaCombinedWithOtherTypesOfCarcinoma" }, { - "@id": "bts:BodyofStomach" + "@id": "bts:PrecursorCellLymphoblasticLymphoma;NOS" }, { - "@id": "bts:BodyofthePancreas" + "@id": "bts:PosteriorFossaEpendymoma;CNSWHOGrade2" }, { - "@id": "bts:BodyofthePenis" + "@id": "bts:PituitaryAdenoma;NOS" }, { - "@id": "bts:Bone" + "@id": "bts:Neoplasm;Malignant;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:BoneMarrow" + "@id": "bts:SexCord-GonadalStromalTumor;IncompletelyDifferentiated" }, { - "@id": "bts:BoneoftheExtremity" + "@id": "bts:HighGradeFollicularDerivedThyroidCarcinoma" }, { - "@id": "bts:BrachialLymphNode" + "@id": "bts:DesmoplasticFibroma" }, { - "@id": "bts:BrachialPlexus" + "@id": "bts:Perineuroma" }, { - "@id": "bts:Brachialis" + "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant;CNSWHOGrade4" }, { - "@id": "bts:Brain" + "@id": "bts:Ganglioglioma" }, { - "@id": "bts:BrainDuraMater" + "@id": "bts:Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:BrainStem" + "@id": "bts:ParatesticularRhabdomyosarcomaWithDiffuseAnaplasia" }, { - "@id": "bts:BrainVentricle" + "@id": "bts:Hemangioblastoma" }, { - "@id": "bts:BranchialCleftRemnant" + "@id": "bts:ColorectalCarcinoma" }, { - "@id": "bts:Breast" + "@id": "bts:AcuteMyelomonocyticLeukemia" }, { - "@id": "bts:BroadLigament" + "@id": "bts:DiffuseMidlineGlioma;H3K27-Altered" }, { - "@id": "bts:BronchialLymphNode" + "@id": "bts:T-LymphoblasticLymphoma" }, { - "@id": "bts:Bronchiole" + "@id": "bts:Lymphangioma;NOS" }, { - "@id": "bts:Bronchus" + "@id": "bts:Neoplasm;Benign" }, { - "@id": "bts:BuccalMucosa" + "@id": "bts:PapillaryIntralymphaticAngioendothelioma" }, { - "@id": "bts:Buttock" + "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;ZFTAFusion-Positive" }, { - "@id": "bts:C1Vertebra" + "@id": "bts:UnclassifiedSarcomaWithRoundCellMorphology" }, { - "@id": "bts:C2Vertebra" + "@id": "bts:Glioma" }, { - "@id": "bts:Calcaneum" + "@id": "bts:Medulloblastoma;Classic(Biphasic)HistologicType;Non-SHH/Non-WNTMolecularGroup;CNSWHOGrade4" }, { - "@id": "bts:Calf" + "@id": "bts:SoftTissueSarcoma" }, { - "@id": "bts:CardiacAtrium" + "@id": "bts:Xanthogranuloma" }, { - "@id": "bts:CardiacVentricle" + "@id": "bts:Neoplasm;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" }, { - "@id": "bts:Carina" + "@id": "bts:Bronchio-AlveolarCarcinoma;Mucinous" }, { - "@id": "bts:CarotidArtery" + "@id": "bts:HepatocellularCarcinoma;Fibrolamellar" }, { - "@id": "bts:CarotidBody" + "@id": "bts:PancreaticNeuroendocrineTumor;Nonfunctioning" }, { - "@id": "bts:CarpalBone" + "@id": "bts:MyxopapillaryEpendymoma" }, { - "@id": "bts:CarpalRegion" + "@id": "bts:Chondrosarcoma;NOS" }, { - "@id": "bts:Cartilage" + "@id": "bts:FavorGanglioglioma" }, { - "@id": "bts:CaudaEquina" + "@id": "bts:PapillaryTumorOfPinealRegion" }, { - "@id": "bts:Cecum" + "@id": "bts:AcuteMyeloidLeukemiaWithMutatedNPM1" }, { - "@id": "bts:CeliacArtery" + "@id": "bts:EpithelioidHemangioendothelioma;NOS" }, { - "@id": "bts:CeliacLymphNode" + "@id": "bts:Neuroblastoma;NOS" }, { - "@id": "bts:CentralNervousSystem" + "@id": "bts:ChondroidChordoma" }, { - "@id": "bts:CentralPortionoftheBreast" + "@id": "bts:InfiltratingDuctAndLobularCarcinoma" }, { - "@id": "bts:CerebellopontineAngle" + "@id": "bts:MitoticallyActiveGlial/GlioneuronalNeoplasm" }, { - "@id": "bts:Cerebellum" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:CerebralCortex" + "@id": "bts:CPNET" }, { - "@id": "bts:CerebralHemisphere" + "@id": "bts:MycosisFungoides;LangerhansCellHistiocytosis;NOS" }, { - "@id": "bts:CerebralMeninges" + "@id": "bts:T-LymphoblasticLeukemia" }, { - "@id": "bts:CerebralPeduncle" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:CerebralWhiteMatter" + "@id": "bts:ClearCellMeningioma;Meningioma;Other" }, { - "@id": "bts:CeruminousGland" + "@id": "bts:AmeloblasticCarcinosarcoma" }, { - "@id": "bts:CervicalEsophagus" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:CervicalGland" + "@id": "bts:MeningothelialMeningioma" }, { - "@id": "bts:CervicalLymphNode" + "@id": "bts:EpithelioidCellMelanoma" }, { - "@id": "bts:CervixUteri" + "@id": "bts:ProstateCancer" }, { - "@id": "bts:Cheek" + "@id": "bts:Paraganglioma;Malignant" }, { - "@id": "bts:Chest" + "@id": "bts:SmallCellSarcoma" }, { - "@id": "bts:ChestWall" + "@id": "bts:CystosarcomaPhyllodes;NOS" }, { - "@id": "bts:Choroid" + "@id": "bts:Seminoma;NOS" }, { - "@id": "bts:ChoroidPlexus" + "@id": "bts:YolkSacTumor;NOS" }, { - "@id": "bts:ChoroidPlexusoftheFourthVentricle" + "@id": "bts:IntraductalCarcinomaNOS" }, { - "@id": "bts:ChoroidPlexusoftheLateralVentricle" + "@id": "bts:Adenocarcinoma;EndocervicalType" }, { - "@id": "bts:ChoroidPlexusoftheThirdVentricle" + "@id": "bts:Neurofibroma;NOS" }, { - "@id": "bts:CiliaryBody" + "@id": "bts:Astroblastoma;Astroblastoma;MN1-Altered;High-GradeGlioma" }, { - "@id": "bts:Clitoris" + "@id": "bts:MeningothelialMeningioma;Grade1" }, { - "@id": "bts:Coccyx" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:CochlearNerve" + "@id": "bts:Unknown" }, { - "@id": "bts:Colon" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;CNSSarcoma;EwingSarcoma" }, { - "@id": "bts:CommissureoftheLip" + "@id": "bts:Glioma;Malignant;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" }, { - "@id": "bts:CommonBileDuct" + "@id": "bts:EndometrioidAdenocarcinoma;NOS" }, { - "@id": "bts:Concha" + "@id": "bts:Pancreas-AdenocarcinomaDuctalType" }, { - "@id": "bts:Conjunctiva" + "@id": "bts:GiantCellGlioblastoma;Glioblastoma;IDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:ConnectiveTissue" + "@id": "bts:Angiomyosarcoma" }, { - "@id": "bts:ConusMedullaris" + "@id": "bts:CarcinoidTumor" }, { - "@id": "bts:Coracobrachialis" + "@id": "bts:AdenosquamousCarcinoma" }, { - "@id": "bts:Cornea" + "@id": "bts:MetastaticNeuroblastoma" }, { - "@id": "bts:CorneoscleralLimbus" + "@id": "bts:ClearCellSarcomaOfKidney" }, { - "@id": "bts:CorpusCallosum" + "@id": "bts:InfiltratingDuctMixedWithOtherTypesOfCarcinoma" }, { - "@id": "bts:CorpusStriatum" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" }, { - "@id": "bts:CorpusUteri" + "@id": "bts:EmbryonalCarcinoma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:CostalCartilage" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;CNSGermCellTumors;CNSGerminoma" }, { - "@id": "bts:CostovertebralJoint" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PleomorphicXanthoastrocytoma" }, { - "@id": "bts:CowperGland" + "@id": "bts:LowCumulativeSunDamageMelanoma" }, { - "@id": "bts:CranialNerve" + "@id": "bts:SupratentorialEpendymoma" }, { - "@id": "bts:CraniopharyngealDuct" + "@id": "bts:OssifyingFibromyxoidTumor;NOS" }, { - "@id": "bts:CricoidCartilage" + "@id": "bts:DiffuseLargeB-CellLymphoma;NOS" }, { - "@id": "bts:Cul-de-sac" + "@id": "bts:AdenocarcinomaWithNeuroendocrineDifferentiation" }, { - "@id": "bts:CuneiformCartilage" + "@id": "bts:AtypicalMeningioma" }, { - "@id": "bts:CysticDuct" + "@id": "bts:Pineoblastoma" }, { - "@id": "bts:DescendingColon" + "@id": "bts:ChronicMyeloidLeukemia;NOS" }, { - "@id": "bts:Diaphragm" + "@id": "bts:AtypicalChoroidPlexusPapilloma" }, { - "@id": "bts:DiaphragmaticLymphNode" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFB" }, { - "@id": "bts:DomeoftheBladder" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS;High-GradeGlioma" }, { - "@id": "bts:DuctofGartner" + "@id": "bts:OxyphilicAdenocarcinoma" }, { - "@id": "bts:DuctusSantorini" + "@id": "bts:FavorPilocyticAstrocytoma;CNSWHOGrade1" }, { - "@id": "bts:Duodenum" + "@id": "bts:PoorlyDifferentiated;IntermediateMitotic-KaryorrhecticIndex" }, { - "@id": "bts:DuraMater" + "@id": "bts:ClearCellMeningioma" }, { - "@id": "bts:Ear" + "@id": "bts:Medulloblastoma;ClassicHistologicType;CNSWHOGrade4" }, { - "@id": "bts:EarSkin" + "@id": "bts:AppearancesConsistentWithAlveolarSoftPartSarcoma" }, { - "@id": "bts:Ectocervix" + "@id": "bts:DedifferentiatedLiposarcoma" }, { - "@id": "bts:ElbowJoint" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:ElbowSkin" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Endocardium" + "@id": "bts:TubularAdenocarcinoma" }, { - "@id": "bts:Endocervix" + "@id": "bts:Rhabdomyosarcoma;MostLikelyAnEmbryonalCarcinoma" }, { - "@id": "bts:EndocrineGland" + "@id": "bts:Adenocarcinoma;NOS" }, { - "@id": "bts:EndometrialStroma" + "@id": "bts:PleuropulmonaryBlastoma" }, { - "@id": "bts:Endometrium" + "@id": "bts:BasaloidSquamousCellCarcinoma" }, { - "@id": "bts:Ependyma" + "@id": "bts:Oligodendroglioma;Anaplastic;NOS" }, { - "@id": "bts:Epicardium" + "@id": "bts:PilocyticAstrocytoma;WHOGrade1" }, { - "@id": "bts:Epididymis" + "@id": "bts:NotApplicable" }, { - "@id": "bts:EpiduralSpinalCanalSpace" + "@id": "bts:AbdominalFibromatosis" }, { - "@id": "bts:Epiglottis" + "@id": "bts:Hamartoma" }, { - "@id": "bts:EpitrochlearLymphNode" + "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:Esophagus" + "@id": "bts:ChoroidPlexusPapilloma;NOS;ChoroidPlexusTumors" }, { - "@id": "bts:EthmoidBone" + "@id": "bts:BurkittLymphoma;NOS" }, { - "@id": "bts:EthmoidSinus" + "@id": "bts:LymphoepithelialCarcinoma" }, { - "@id": "bts:EustachianTube" + "@id": "bts:Bronchiolo-AlveolarCarcinoma;Non-Mucinous" }, { - "@id": "bts:ExternalAcousticMeatus" + "@id": "bts:KidneyClearCellRenalCarcinoma" }, { - "@id": "bts:ExternalEar" + "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma" }, { - "@id": "bts:ExternalLip" + "@id": "bts:AdenocarcinomaInSituInAdenomatousPolyp" }, { - "@id": "bts:ExternalLowerLip" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant" }, { - "@id": "bts:ExternalNose" + "@id": "bts:SmallBlueCellTumor.FavorMedulloblastoma" }, { - "@id": "bts:ExternalUpperLip" + "@id": "bts:BLymphoblasticLeukemia/Lymphoma;NOS" }, { - "@id": "bts:ExtrahepaticBileDuct" + "@id": "bts:EmbryonalTumorWithMulti-LayeredRosettes" }, { - "@id": "bts:Eye" + "@id": "bts:ChronicEosinophilicLeukemia" }, { - "@id": "bts:Eyebrow" + "@id": "bts:MixedGlioma" }, { - "@id": "bts:Eyelid" + "@id": "bts:BasalCellAdenocarcinoma" }, { - "@id": "bts:FacialBone" + "@id": "bts:OlfactoryNeuroblastoma" }, { - "@id": "bts:FacialNerve" + "@id": "bts:TransitionalCellCarcinoma;NOS" }, { - "@id": "bts:FallopianTube" + "@id": "bts:ClearCellSarcoma;NOS" }, { - "@id": "bts:FalseVocalCord" + "@id": "bts:EmbryonalRhabdomyosarcoma;High-Grade" }, { - "@id": "bts:FalxCerebelli" + "@id": "bts:AngiocentricGlioma" }, { - "@id": "bts:FalxCerebri" + "@id": "bts:DiffuseMidlineGlioma;H3K27Altered;WHOGrade4" }, { - "@id": "bts:Fascia" + "@id": "bts:Osteoblastoma;NOS" }, { - "@id": "bts:FemaleGenitalia" + "@id": "bts:MalignantNeoplasmWithRhabdomyoblasticDifferentiation;HighGrade" }, { - "@id": "bts:FemoralArtery" + "@id": "bts:MyxopapillaryEpendymoma(CNSWHOGradeII)" }, { - "@id": "bts:FemoralLymphNode" + "@id": "bts:MelanomaInSitu" }, { - "@id": "bts:FemoralNerve" + "@id": "bts:SecretoryCarcinoma" }, { - "@id": "bts:Femur" + "@id": "bts:PilocyticAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:FibrousTissue" + "@id": "bts:Rhabdomyosarcoma;FavorAlveolarType" }, { - "@id": "bts:Fibula" + "@id": "bts:Adenocarcinoma;MetastaticNOS" }, { - "@id": "bts:Finger" + "@id": "bts:Fibrosarcoma;NOS" }, { - "@id": "bts:Fingernail" + "@id": "bts:Glioblastoma" }, { - "@id": "bts:Flank" + "@id": "bts:AtypicalChoroidPlexusPapilloma;ChoroidPlexusTumors" }, { - "@id": "bts:FloorofMouth" + "@id": "bts:Ganglioneuroma;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Foot" + "@id": "bts:DesmoplasticMelanoma;NOS" }, { - "@id": "bts:FootBone" + "@id": "bts:ChoroidPlexusCarcinoma" }, { - "@id": "bts:FootPhalanx" + "@id": "bts:SoftTissueTumor;Benign" }, { - "@id": "bts:FootSkin" + "@id": "bts:Medulloblastoma;NOS" }, { - "@id": "bts:Forearm" + "@id": "bts:Glioblastoma;NOS;Medulloblastoma;NOS" }, { - "@id": "bts:Forehead" + "@id": "bts:ResidualAstrocytoma" }, { - "@id": "bts:FourthVentricle" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(V;11q23);MLLRearranged" }, { - "@id": "bts:FrontalBone" + "@id": "bts:ExtraAdrenalParaganglioma" }, { - "@id": "bts:FrontalLobe" + "@id": "bts:MucoepidermoidCarcinoma" }, { - "@id": "bts:FrontalPole" + "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:FrontalSinus" + "@id": "bts:ChoroidPlexusPapilloma;NOS" }, { - "@id": "bts:FundusoftheStomach" + "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:FundusUteri" + "@id": "bts:B-LymphoblasticLeukemia/Lymphoma;NOS" }, { - "@id": "bts:Gallbladder" + "@id": "bts:HodgkinLymphoma;NodularSclerosis;NOS" }, { - "@id": "bts:GastricCardia" + "@id": "bts:Fibroma" }, { - "@id": "bts:GastricLymphNode" + "@id": "bts:Craniopharyngioma;NOS;AdamantinomatousCraniopharyngioma" }, { - "@id": "bts:GastrocnemiusMuscle" + "@id": "bts:T-Cell/HistiocyteRichLargeB-CellLymphoma" }, { - "@id": "bts:GastroesophagealJunction" + "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade4" }, { - "@id": "bts:GastrointestinalTract" + "@id": "bts:AcuteErythroidLeukemia" }, { - "@id": "bts:Gingiva" + "@id": "bts:Glioma;HistologicallyLowGrade" }, { - "@id": "bts:GlandofLittre" + "@id": "bts:MucousAdenocarcinoma" }, { - "@id": "bts:GlansPenis" + "@id": "bts:Glioma;Malignant;Ganglioglioma;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:GlobusPallidus" + "@id": "bts:NodularMelanoma" }, { - "@id": "bts:GlossopharyngealNerve" + "@id": "bts:SynovialSarcoma;Biphasic" }, { - "@id": "bts:Glottis" + "@id": "bts:Neoplasm;Metastatic" }, { - "@id": "bts:GluteusMaximus" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:GreaterCurvatureoftheStomach" + "@id": "bts:Thymoma;NOS" }, { - "@id": "bts:Hand" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:HandDigit1" + "@id": "bts:Desmoplastic/NodularMedulloblastoma" }, { - "@id": "bts:HandPhalanx" + "@id": "bts:PapillaryGlioneuronalTumor" }, { - "@id": "bts:HandSkin" + "@id": "bts:MixedPhenotypeAcuteLeukemia;T/Myeloid;NOS" }, { - "@id": "bts:HardPalate" + "@id": "bts:Cholangiocarcinoma" }, { - "@id": "bts:HeadandNeckLymphNode" + "@id": "bts:Astroblastoma;MN1-Altered.HistologicallyHigh-Grade" }, { - "@id": "bts:HeadofthePancreas" + "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated;WithHeterologousElements" }, { - "@id": "bts:HeadSkin" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;Infant-TypeHemisphericGlioma" }, { - "@id": "bts:Heart" + "@id": "bts:JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Helix" + "@id": "bts:EmbryonalNeoplasmWithINI-1LossByImmunohistochemistry" }, { - "@id": "bts:HematopoieticSystem" + "@id": "bts:MyeloidLeukemiaWithMyelodysplasia-RelatedChanges" }, { - "@id": "bts:Hepatic" + "@id": "bts:PrimaryCutaneousFollicleCenterLymphoma" }, { - "@id": "bts:HepaticDuct" + "@id": "bts:ChoroidPlexusCarcinoma;WHOGrade3" }, { - "@id": "bts:HepaticFlexure" + "@id": "bts:InfiltratingDuctCarcinomaNOS" }, { - "@id": "bts:HepaticLymphNode" + "@id": "bts:TLymphoblasticLeukemia/Lymphoma" }, { - "@id": "bts:Hip" + "@id": "bts:Glioma;Malignant;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:HipJoint" + "@id": "bts:MixedGermCellTumor;MyelodysplasticSyndromeWithExcessBlasts" }, { - "@id": "bts:Hippocampus" + "@id": "bts:ClearCellAdenocarcinoma;NOS" }, { - "@id": "bts:Humerus" + "@id": "bts:CutaneousT-CellLymphoma;NOS" }, { - "@id": "bts:Hymen" + "@id": "bts:Germinoma" }, { - "@id": "bts:HyoidBone" + "@id": "bts:Neoplasm;Malignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:HypoglossalNerve" + "@id": "bts:MeningealMelanocytoma" }, { - "@id": "bts:Hypopharynx" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Hypothalamus" + "@id": "bts:AcutePromyelocyticLeukemia;T(15;17)(Q22;Q11-12)" }, { - "@id": "bts:IleocecalValve" + "@id": "bts:AlveolarSoftPartSarcoma" }, { - "@id": "bts:Ileum" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:IliacArtery" + "@id": "bts:MixedEpithelioidAndSpindleCellMelanoma" }, { - "@id": "bts:IliacLymphNode" + "@id": "bts:CNSEmbryonalTumor;NOS;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" }, { - "@id": "bts:IliacVein" + "@id": "bts:MalignantTumor;SpindleCellType" }, { - "@id": "bts:IliopsoasMuscle" + "@id": "bts:Glioma;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:Ilium" + "@id": "bts:Glioma;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:InferiorVenaCava" + "@id": "bts:EndometrioidCarcinoma;NOS" }, { - "@id": "bts:InfraclavicularLymphNode" + "@id": "bts:LungSquamousCellCarcinoma;NOS" }, { - "@id": "bts:InfraclavicularRegion" + "@id": "bts:PapillaryUrothelialCarcinoma;Non-Invasive" }, { - "@id": "bts:InfratentorialBrain" + "@id": "bts:Neuroblastoma;UndifferentiatedType" }, { - "@id": "bts:InguinalLymphNode" + "@id": "bts:PeriostealOsteosarcoma" }, { - "@id": "bts:InguinalRegion" + "@id": "bts:MixedPhenotypeAcuteLeukemia;B/Myeloid;NOS" }, { - "@id": "bts:InnerCanthus" + "@id": "bts:InflammatoryCarcinoma" }, { - "@id": "bts:InnerEar" + "@id": "bts:Glioblastoma;NOS" }, { - "@id": "bts:IntercostalLymphNode" + "@id": "bts:Carcinoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:IntercostalMuscle" + "@id": "bts:SquamousCellCarcinoma;NOS" }, { - "@id": "bts:IntercostalNerve" + "@id": "bts:HypocellularLowGradeLesion" }, { - "@id": "bts:InternalCapsule" + "@id": "bts:GlioblastomaMultiforme" }, { - "@id": "bts:InternalIliacLymphNode" + "@id": "bts:Pancreas-UndifferentiatedCarcinoma" }, { - "@id": "bts:InternalMammaryArtery" + "@id": "bts:DifferentiatingNeuroblastoma" }, { - "@id": "bts:InternalMammaryLymphNode" + "@id": "bts:MyxoidSpindleCellTumor" }, { - "@id": "bts:InternalNare" + "@id": "bts:MerkelCellTumor" }, { - "@id": "bts:IntervertebralDisc" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS;CNSSarcoma;CNSSarcoma;NOSOrNEC" }, { - "@id": "bts:Intestine" + "@id": "bts:Hemangioma;NOS" }, { - "@id": "bts:Intra-AbdominalLymphNode" + "@id": "bts:AcuteMyeloidLeukemiaWithAbnormalMarrowEosinophils" }, { - "@id": "bts:IntrahepaticBileDuct" + "@id": "bts:WellDifferentiatedNeuroendocrinceTumor;Grade1" }, { - "@id": "bts:IntraocularRouteofAdministration" + "@id": "bts:Ganglioglioma;Anaplastic" }, { - "@id": "bts:IntrathoracicLymphNode" + "@id": "bts:EpendymomaWHOGrade2" }, { - "@id": "bts:Iris" + "@id": "bts:SynovialSarcoma;NOS" }, { - "@id": "bts:IschiorectalFossa" + "@id": "bts:ThymicCarcinoma;NOS" }, { - "@id": "bts:Ischium" + "@id": "bts:TumorCells;Malignant" }, { - "@id": "bts:IsletofLangerhans" + "@id": "bts:PilomyxoidAstrocytoma" }, { - "@id": "bts:IsthmusUteri" + "@id": "bts:PapillaryCarcinoma;ColumnarCell" }, { - "@id": "bts:JawBone" + "@id": "bts:PlexiformFibrohistiocyticTumor" }, { - "@id": "bts:JawJoint" + "@id": "bts:Astrocytoma;NOS;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:Jejunum" + "@id": "bts:Carcinoma;Undifferentiated;NOS" }, { - "@id": "bts:Joint" + "@id": "bts:DermatofibrosarcomaProtuberans;NOS" }, { - "@id": "bts:Kidney" + "@id": "bts:HighGradeGliomaWithNecrosis;WHOGrade4" }, { - "@id": "bts:KneeJoint" + "@id": "bts:Infiltratingductularcarcinoma" }, { - "@id": "bts:KneeSkin" + "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges;JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Labium" + "@id": "bts:InfiltratingDuctAndMucinousCarcinoma" }, { - "@id": "bts:LabiumMajus" + "@id": "bts:IntraductalPapillaryCarcinoma" }, { - "@id": "bts:LabiumMinus" + "@id": "bts:SerousSurfacePapillaryCarcinoma" }, { - "@id": "bts:LacrimalGland" + "@id": "bts:InvasiveCarcinoma" }, { - "@id": "bts:LacrimalSac" + "@id": "bts:HighGradeMalignantEpithelioidNeoplasm" }, { - "@id": "bts:LargeIntestine" + "@id": "bts:FavorPilocyticAstrocytomaWithIncreasedProliferationIndices" }, { - "@id": "bts:LaryngealCartilage" + "@id": "bts:Medulloblastoma;ClassicMorphology;CNSWHOGrade4;NON-WNT/NON-SHH;Group4SubtypeByMethylation" }, { - "@id": "bts:Larynx" + "@id": "bts:CompositeHodgkinAndNon-HodgkinLymphoma" }, { - "@id": "bts:LateralVentricle" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT;NOSOrNEC" }, { - "@id": "bts:LateralWalloftheBladder" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-TYR" }, { - "@id": "bts:LateralWalloftheNasopharynx" + "@id": "bts:PrimaryCutaneousCD30PositiveT-CellLymphoproliferativeDisorder" }, { - "@id": "bts:LateralWalloftheOropharynx" + "@id": "bts:Hemangioendothelioma;NOS" }, { - "@id": "bts:LateralWallofthePharynx" + "@id": "bts:HypercellularLesionWithAtypia" }, { - "@id": "bts:LegSkin" + "@id": "bts:EmbryonalCarcinoma;NOS" }, { - "@id": "bts:Lens" + "@id": "bts:Subependymoma;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:LesserCurvatureoftheStomach" + "@id": "bts:GermCellTumor;Nonseminomatous" }, { - "@id": "bts:Ligament" + "@id": "bts:AdrenalCorticalCarcinoma" }, { - "@id": "bts:LingualTonsil" + "@id": "bts:OlfactoryNeurocytoma" }, { - "@id": "bts:LingulaoftheLung" + "@id": "bts:LargeCellMedulloblastoma;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:Lip" + "@id": "bts:NuclearProteinInTestis(NUT)-AssociatedCarcinoma" }, { - "@id": "bts:Liver" + "@id": "bts:Epithelial-MyoepithelialCarcinoma" }, { - "@id": "bts:LobuleoftheAuricle" + "@id": "bts:SquamousCellCarcinoma;Keratinizing;NOS" }, { - "@id": "bts:LowerExtremity" + "@id": "bts:Ganglioneuroma;Other;Schwannoma" }, { - "@id": "bts:LowerGingiva" + "@id": "bts:GlomusTumor;Malignant" }, { - "@id": "bts:LowerLobeoftheLung" + "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:LowerThirdoftheEsophagus" + "@id": "bts:MalignantLymphoma;Non-Hodgkin;NOS" }, { - "@id": "bts:Lower-InnerQuadrantoftheBreast" + "@id": "bts:EmbryonalRhabdomyosarcoma;NOS;CNSEmbryonalTumor;NOS" }, { - "@id": "bts:Lower-OuterQuadrantoftheBreast" + "@id": "bts:TenosynovialGiantCellTumor;NOS" }, { - "@id": "bts:LumbarNerve" + "@id": "bts:HistologicallyLow-GradeGlioma" }, { - "@id": "bts:LumbosacralPlexus" + "@id": "bts:Chordoma;NOS;Ganglioneuroblastoma" }, { - "@id": "bts:Lung" + "@id": "bts:Ependymoma;NOS" }, { - "@id": "bts:LymphNode" + "@id": "bts:InvasiveMammaryCarcinoma" }, { - "@id": "bts:LymphNodeofInguinalRegionorLeg" + "@id": "bts:RhabdoidTumor;Malignant" }, { - "@id": "bts:Lymphatic" + "@id": "bts:Medulloblastoma;ClassicHistology" }, { - "@id": "bts:MainBronchus" + "@id": "bts:AdenocarcinomaInVillousAdenoma" }, { - "@id": "bts:MaleGenitalia" + "@id": "bts:UndifferentiatedSarcoma" }, { - "@id": "bts:MalePrepuce" + "@id": "bts:PapillaryThyroidCarcinoma" }, { - "@id": "bts:MammaryGland" + "@id": "bts:RenalCellAdenocarcinoma" }, { - "@id": "bts:Mandible" + "@id": "bts:HodgkinLymphoma;NOS" }, { - "@id": "bts:MasseterMuscle" + "@id": "bts:MalignantHistiocytosis" }, { - "@id": "bts:Maxilla" + "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:MaxillarySinus" + "@id": "bts:SolidPseudopapillaryTumorOfOvary" }, { - "@id": "bts:MeckelDiverticulum" + "@id": "bts:AstrocyticGlioma;HistologicallyLow-Grade;MostCompatibleWithPilocyticAstrocytoma" }, { - "@id": "bts:MedianNerve" + "@id": "bts:InflammatoryMyofibroblasticTumorWithAnAssociatedOdontogenicKeratocyst" }, { - "@id": "bts:MediastinalLymphNode" + "@id": "bts:Myofibromatosis" }, { - "@id": "bts:Mediastinum" + "@id": "bts:SmallRoundBlueCellTumor" }, { - "@id": "bts:MedullaOblongata" + "@id": "bts:Meningioma;Atypical;CNSWHOGrade2" }, { - "@id": "bts:MeibomianGland" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;AdamantinomatousCraniopharyngioma;Craniopharyngioma" }, { - "@id": "bts:Meninges" + "@id": "bts:PilocyticAstrocytoma" }, { - "@id": "bts:MeniscusLateralis" + "@id": "bts:LobularAndDuctalCarcinoma" }, { - "@id": "bts:MeniscusMedialis" + "@id": "bts:Desmoplastic/NodularMedulloblastoma(HistologicallyDefined);CNSWHOGrade4" }, { - "@id": "bts:Mentum" + "@id": "bts:MalignantPeripheralNerveSheathTumorWithRhabdomyoblasticDifferentiation" }, { - "@id": "bts:Mesencephalon" + "@id": "bts:TumorCells;Malignant;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:MesentericArtery" + "@id": "bts:MalignantTumor" }, { - "@id": "bts:MesentericLymphNode" + "@id": "bts:BrainTumor" }, { - "@id": "bts:Mesentery" + "@id": "bts:GastrointestinalStromalTumor;Benign" }, { - "@id": "bts:MesonephricDuct" + "@id": "bts:RasmussenEncephalitis" }, { - "@id": "bts:Mesonephros" + "@id": "bts:Medulloblastoma;NOS;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" }, { - "@id": "bts:Mesovarium" + "@id": "bts:Adenocarcinoma;NOS;Glioblastoma;NOS" }, { - "@id": "bts:MetacarpalBone" + "@id": "bts:MalignantPeripheralNerveSheathTumor(Mpnst)" }, { - "@id": "bts:MetatarsalBone" + "@id": "bts:EmbryonalSarcoma" }, { - "@id": "bts:MiddleCranialFossa" + "@id": "bts:Neoplasm;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:MiddleEar" + "@id": "bts:AnaplasticLargeCellLymphoma;T-CellAndNull-CellType" }, { - "@id": "bts:MiddleLobeoftheRightLung" + "@id": "bts:Teratoma;NOS" }, { - "@id": "bts:MiddleThirdoftheEsophagus" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS" }, { - "@id": "bts:MinorSalivaryGland" + "@id": "bts:Infiltratingductandlobularcarcinoma" }, { - "@id": "bts:MonsPubis" + "@id": "bts:SclerosingStromalTumor" }, { - "@id": "bts:MucosaoftheLip" + "@id": "bts:TumorCells;UncertainWhetherBenignOrMalignant" }, { - "@id": "bts:MucosaoftheLowerLip" + "@id": "bts:AcuteMyeloidLeukemia;NOS;JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:MucosaoftheUpperLip" + "@id": "bts:LobularCarcinoma;NOS" }, { - "@id": "bts:Muscle" + "@id": "bts:Schwannoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:MusculusLatissimusDorsi" + "@id": "bts:Sarcoma;NOS" }, { - "@id": "bts:Myocardium" + "@id": "bts:CNSEmbryonalTumorWithRhabdoidFeatures" }, { - "@id": "bts:Myometrium" + "@id": "bts:GlialNeoplasm;Astrocytoma" }, { - "@id": "bts:NasalBone" + "@id": "bts:Pancreas-AdenosquamousCarcinoma" }, { - "@id": "bts:NasalCartilage" + "@id": "bts:MesenchymalLesion" }, { - "@id": "bts:NasalCavity" + "@id": "bts:SerousAdenocarcinoma;NOS" }, { - "@id": "bts:NasalSeptum" + "@id": "bts:Hepatoblastoma;NOS" }, { - "@id": "bts:NasalTurbinate" + "@id": "bts:Astrocytoma;NOS;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:NasolacrimalDuct" + "@id": "bts:SexCord-GonadalStromalTumor;NOS" }, { - "@id": "bts:Nasopharynx" + "@id": "bts:AdenoidCysticCarcinoma" }, { - "@id": "bts:NeckSkin" + "@id": "bts:EmbryonalTumor" }, { - "@id": "bts:Nerve" + "@id": "bts:AcuteMyeloidLeukemia;T(8;21)(Q22;Q22)" }, { - "@id": "bts:NervousSystem" + "@id": "bts:SpindledAndEpithelioidTumorWithFeaturesOfIntracranialMesenchymalTumor" }, { - "@id": "bts:Nipple" + "@id": "bts:Cavernoma" }, { - "@id": "bts:Nose" + "@id": "bts:MalignantTumor;SmallCellType" }, { - "@id": "bts:Nostril" + "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSGerminoma" }, { - "@id": "bts:ObturatorLymphNode" + "@id": "bts:LowGradeNeoplasm.FeaturesSuggestiveOfPilocyticAstrocytoma." }, { - "@id": "bts:ObturatorNerve" + "@id": "bts:Neoplasm;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:OccipitalBone" + "@id": "bts:SerousCarcinoma;NOS" }, { - "@id": "bts:OccipitalLobe" + "@id": "bts:MetastaticSecondaryTumors" }, { - "@id": "bts:OccipitalLymphNode" + "@id": "bts:YolkSacTumor" }, { - "@id": "bts:OculomotorMuscle" + "@id": "bts:MorphologicallyConsistentWithPilocyticAstrocytoma;WHOGrade1" }, { - "@id": "bts:OculomotorNerve" + "@id": "bts:NeuroendocrineTumor;NOS" }, { - "@id": "bts:OlfactoryNerve" + "@id": "bts:MixedGermCellTumor;AcuteMegakaryoblasticLeukemia" }, { - "@id": "bts:Omentum" + "@id": "bts:JuvenileMyelomonocyticLeukemia" }, { - "@id": "bts:OpticChiasm" + "@id": "bts:AcuteMyeloidLeukemiaWithT(9;11)(P22;Q23);MLLT3-MLL" }, { - "@id": "bts:OpticNerve" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;PleomorphicXanthoastrocytoma" }, { - "@id": "bts:OpticTract" + "@id": "bts:PapillaryGlioneuronalTumor;WHOGrade1" }, { - "@id": "bts:OralCavity" + "@id": "bts:CentralNeuroblastoma" }, { - "@id": "bts:Orbit" + "@id": "bts:DysembryoplasticNeuroepithelialTumor" }, { - "@id": "bts:Oropharynx" + "@id": "bts:MixedAdenocarcinomaAndSquamousCellCarcinoma;Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:OtherSpecifiedPartsofPancreas" + "@id": "bts:SubcutaneousPanniculitis-LikeT-CellLymphoma" }, { - "@id": "bts:OuterCanthus" + "@id": "bts:MyofibroblasticTumor" }, { - "@id": "bts:Ovary" + "@id": "bts:Nephroblastoma;NOS" }, { - "@id": "bts:Palate" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:PalatineTonsil" + "@id": "bts:MalignantMelanoma;NOS;MeningealMelanocyticNeoplasms(IncludesMelanoma);Other" }, { - "@id": "bts:PalmarFascia" + "@id": "bts:Carcinoma;Metastatic;NOS" }, { - "@id": "bts:Pancreas" + "@id": "bts:FollicularCarcinoma;MinimallyInvasive" }, { - "@id": "bts:PancreaticDuct" + "@id": "bts:Angiomyofibroblastoma" }, { - "@id": "bts:PancreaticLymphNode" + "@id": "bts:ClassicMedulloblastoma;CNSWHOGrade4" }, { - "@id": "bts:ParaaorticLymphNode" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:Paraganglion" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-MYC" }, { - "@id": "bts:Parametrium" + "@id": "bts:Astroblastoma" }, { - "@id": "bts:ParanasalSinus" + "@id": "bts:MeningothelialMeningioma;Meningioma;Other" }, { - "@id": "bts:ParasympatheticNervousSystem" + "@id": "bts:PoorlyDifferentiatedChordoma" }, { - "@id": "bts:ParathyroidGland" + "@id": "bts:ChronicMyelogenousLeukemia" }, { - "@id": "bts:ParatrachealLymphNode" + "@id": "bts:PleomorphicSarcoma" }, { - "@id": "bts:ParietalBone" + "@id": "bts:SupratentorialEpendymomaCNSWHOGrade3" }, { - "@id": "bts:ParietalLobe" + "@id": "bts:LeydigCellTumor;NOS" }, { - "@id": "bts:ParietalPleura" + "@id": "bts:Adenosarcoma" }, { - "@id": "bts:ParotidDuct" + "@id": "bts:PigmentedDermatofibrosarcomaProtuberans" }, { - "@id": "bts:ParotidGland" + "@id": "bts:Astrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:ParotidGlandLymphNode" + "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Patella" + "@id": "bts:Astrocytoma;NOS;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:PectoralLymphNode" + "@id": "bts:Myxofibrosarcoma" }, { - "@id": "bts:PectoralisMajor" + "@id": "bts:PrecursorT-CellLymphoblasticLeukemia" }, { - "@id": "bts:PelvicLymphNode" + "@id": "bts:Neurocytoma" }, { - "@id": "bts:Pelvis" + "@id": "bts:AdrenalCorticalTumor;NOS" }, { - "@id": "bts:Penis" + "@id": "bts:Neoplasm;Malignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Pericardium" + "@id": "bts:AcuteMyeloidLeukemia(Megakaryoblastic)WithT(1;22)(P13;Q13);RBM15-MKL1" }, { - "@id": "bts:Perineum" + "@id": "bts:Neoplasm;Malignant;CNSNeuroblastoma;FOXR2-Activated;OtherCNSEmbryonalTumors" }, { - "@id": "bts:PeripheralNerve" + "@id": "bts:Infiltratingductandmucinouscarcinoma" }, { - "@id": "bts:PeritonealCavity" + "@id": "bts:AdenocarcinomaInSitu;NOS" }, { - "@id": "bts:Peritoneum" + "@id": "bts:MucinousAdenocarcinoma" }, { - "@id": "bts:PharyngealTonsil" + "@id": "bts:Retinoblastoma;NOS" }, { - "@id": "bts:Pharynx" + "@id": "bts:AnaplasticEpendymoma" }, { - "@id": "bts:PiaMater" + "@id": "bts:GermCellTumor;Nonseminomatous;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:PinealGland" + "@id": "bts:AcuteMonoblasticAndMonocyticLeukemia" }, { - "@id": "bts:PituitaryGland" + "@id": "bts:Hemangioblastoma;CNSWHOGrade1" }, { - "@id": "bts:Placenta" + "@id": "bts:AlveolarRhabdomyosarcoma" }, { - "@id": "bts:PlantarFascia" + "@id": "bts:MedullaryCarcinoma;NOS" }, { - "@id": "bts:PlantarRegion" + "@id": "bts:AdultGranulosaCellTumorOfTestis" }, { - "@id": "bts:Pleura" + "@id": "bts:Medulloblastoma;WHOGrade4" }, { - "@id": "bts:PonsVarolii" + "@id": "bts:Craniopharyngioma;Adamantinomatous" }, { - "@id": "bts:PoplitealLymphNode" + "@id": "bts:HighGradeMalignantPeripheralNerveSheathTumorWithHeterologousRhabdomyoblasticDifferentiation(MalignantTritonTumor)" }, { - "@id": "bts:PortalLymphNode" + "@id": "bts:SpindleCellRhabdomyosaroma" }, { - "@id": "bts:PostcricoidRegion" + "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant" }, { - "@id": "bts:PosteriorCranialFossa" + "@id": "bts:EpithelioidSarcoma;NOS" }, { - "@id": "bts:PosteriorMediastinum" + "@id": "bts:MyoepithelialCarcinoma" }, { - "@id": "bts:PosteriorWalloftheBladder" + "@id": "bts:MultipleMyeloma" }, { - "@id": "bts:PosteriorWalloftheHypopharynx" + "@id": "bts:Triple-NegativeBreastCarcinoma" }, { - "@id": "bts:PosteriorWalloftheNasopharynx" + "@id": "bts:HepatocellularCarcinoma;NOS;Nephroblastoma;NOS" }, { - "@id": "bts:PosteriorWalloftheOropharynx" + "@id": "bts:Neuroblastoma;SchwannianStromaPoor;PoorlyDifferentiated;LowMKI;FavorableHistology" }, { - "@id": "bts:PosteriorWallofthePharynx" + "@id": "bts:SertoliCellTumor;NOS" }, { - "@id": "bts:PreauricularLymphNode" + "@id": "bts:OssifyingFibroma" }, { - "@id": "bts:ProstateGland" + "@id": "bts:PleomorphicLiposarcoma" }, { - "@id": "bts:ProstaticUtricle" + "@id": "bts:AmelanoticMelanoma" }, { - "@id": "bts:PsoasMuscle" + "@id": "bts:Liposarcoma;NOS" }, { - "@id": "bts:PubicBone" + "@id": "bts:Non-GerminomatousGermCellTumor" }, { - "@id": "bts:PubicSymphysis" + "@id": "bts:LactotrophAdenoma" }, { - "@id": "bts:Pulmonary" + "@id": "bts:TransientAbnormalMyelopoiesis" }, { - "@id": "bts:PulmonaryHilarLymphNode" + "@id": "bts:FavorPosteriorFossaEpendymoma;WHOGRADE3" }, { - "@id": "bts:Putamen" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Pylorus" + "@id": "bts:CarcinomaInSitu;NOS" }, { - "@id": "bts:PyriformSinus" + "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:QuadricepsMuscleoftheThigh" + "@id": "bts:Ependymoma;Anaplastic" }, { - "@id": "bts:RadialArtery" + "@id": "bts:GlialNeoplasm;FavorPilocyticAstrocytoma" }, { - "@id": "bts:RadialNerve" + "@id": "bts:GastrointestinalStromalTumor;NOS" }, { - "@id": "bts:RadiusBone" + "@id": "bts:SerousCystadenocarcinoma;NOS" }, { - "@id": "bts:RathkePouch" + "@id": "bts:PapillaryLesionWithAtypical/HighGradeFeatures" }, { - "@id": "bts:RectosigmoidColon" + "@id": "bts:SpinalEpendymoma;WHOGrade2" }, { - "@id": "bts:RectosigmoidRegion" + "@id": "bts:DuctalCarcinomaInSitu;NOS" }, { - "@id": "bts:Rectum" + "@id": "bts:InfiltratingDuctalCarcinoma" }, { - "@id": "bts:RectusAbdominis" + "@id": "bts:MixedTypeRhabdomyosarcoma" }, { - "@id": "bts:Renal" + "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Mutant" }, { - "@id": "bts:RenalArtery" + "@id": "bts:PrecursorB-CellAcuteLymphoblasticLeukemiaWithHyperdiploidy" }, { - "@id": "bts:RenalCalyx" + "@id": "bts:MesenchymalChondrosarcoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:RenalPelvis" + "@id": "bts:CribriformCarcinoma;NOS" }, { - "@id": "bts:ReticuloendothelialSystem" + "@id": "bts:MyxopapillaryEpendymoma;Anaplastic" }, { - "@id": "bts:Retina" + "@id": "bts:Ependymoma;Anaplastic;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:RetromolarTrigone" + "@id": "bts:Astrocytoma;IDH-Mutant;WHOGrade2" }, { - "@id": "bts:RetroperitonealLymphNode" + "@id": "bts:Meningioangiomatosis" }, { - "@id": "bts:Retroperitoneum" + "@id": "bts:AcuteMyeloidLeukemia;NOS;MyeloproliferativeNeoplasm;Unclassifiable" }, { - "@id": "bts:RetropharyngealLymphNode" + "@id": "bts:Endometrioidcarcinoma;NOS" }, { - "@id": "bts:RoundLigamentoftheUterus" + "@id": "bts:AdenocarcinomaInSitu;Non-Mucinous" }, { - "@id": "bts:SacralBone" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group4" }, { - "@id": "bts:SacralLymphNode" + "@id": "bts:PapillaryCarcinoma;FollicularVariant" }, { - "@id": "bts:SacralNerve" + "@id": "bts:MetaplasticCarcinoma;NOS" }, { - "@id": "bts:SacralPlexus" + "@id": "bts:ChoroidPlexusCarcinoma;ChoroidPlexusTumors" }, { - "@id": "bts:SalivaryGland" + "@id": "bts:PoorlyDifferentiatedSertoli-LeydigCellTumorWithHeterologousRhabdomyosarcomatousDifferentiation" }, { - "@id": "bts:ScaleneLymphNode" + "@id": "bts:LowGradeGlioma" }, { - "@id": "bts:Scalp" + "@id": "bts:SexCordStromalTumorNOS" }, { - "@id": "bts:Scapula" + "@id": "bts:StromaPoor;PoorlyDifferentiatedNeuroblastomaWithLowMKI;FavorableHistology" }, { - "@id": "bts:SciaticNerve" + "@id": "bts:ResidualLowGradeNeuroendocrineTumor(TypicalCarcinoid)" }, { - "@id": "bts:Sclera" + "@id": "bts:MelanoticNeuroectodermalTumor" }, { - "@id": "bts:Scrotum" + "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:SellaTurcica" + "@id": "bts:Glioma;Malignant;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:SeminalVesicle" + "@id": "bts:MalignantLymphoma;NOS" }, { - "@id": "bts:Shoulder" + "@id": "bts:MedulloblastomaWHOGrade4" }, { - "@id": "bts:ShoulderGirdle" + "@id": "bts:ChoroidPlexusPapillaryTumor" }, { - "@id": "bts:ShoulderJoint" + "@id": "bts:FollicularAdenocarcinoma;WellDifferentiated;Neuroblastoma;NOS" }, { - "@id": "bts:SigmoidColon" + "@id": "bts:NeuroepithelialTumor" }, { - "@id": "bts:SkeletalMuscleTissue" + "@id": "bts:MyelodysplasticSyndromeWithMultilineageDysplasia" }, { - "@id": "bts:Skin" + "@id": "bts:PrimaryMediastinal(Thymic)LargeB-CellLymphoma" }, { - "@id": "bts:SkinOfTheAxilla" + "@id": "bts:MastCellLeukemia" }, { - "@id": "bts:SkinoftheFace" + "@id": "bts:Ganglioneuroblastoma" }, { - "@id": "bts:SkinoftheLip" + "@id": "bts:Pheochromocytoma;NOS" }, { - "@id": "bts:SkinoftheLowerLimbandHip" + "@id": "bts:PapillarySerousAdenocarcinoma" }, { - "@id": "bts:SkinoftheScalpandNeck" + "@id": "bts:MixedGermCellTumor" }, { - "@id": "bts:SkinoftheTrunk" + "@id": "bts:LymphoidLeukemia;NOS" }, { - "@id": "bts:SkinoftheUpperLimbandShoulder" + "@id": "bts:EpendymomaNOS" }, { - "@id": "bts:Skull" + "@id": "bts:SmoothMuscleTumorOfUncertainMalignantPotential" }, { - "@id": "bts:Skullcap" + "@id": "bts:CombinedSmallCell-LargeCarcinoma" }, { - "@id": "bts:SmallIntestine" + "@id": "bts:SertoliLeydigCellTumor" }, { - "@id": "bts:SpermaticCord" + "@id": "bts:AnaplasticLargeCellLymphoma;ALKPositive" }, { - "@id": "bts:SphenoidBone" + "@id": "bts:Meningioma;Malignant" }, { - "@id": "bts:SphenoidSinus" + "@id": "bts:RhabdoidTumor;NOS" }, { - "@id": "bts:SphincterofOddi" + "@id": "bts:MerkelCellCarcinoma" }, { - "@id": "bts:SpinalCord" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Meningioma;Other" }, { - "@id": "bts:SpinalCordDuraMater" + "@id": "bts:Lymphoma;NOS" }, { - "@id": "bts:SpinalMeninges" + "@id": "bts:Gangliocytoma;NOS" }, { - "@id": "bts:SpinalNerve" + "@id": "bts:Glioblastoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Spleen" + "@id": "bts:MucinousNon-CysticCarcinoma" }, { - "@id": "bts:SplenicFlexure" + "@id": "bts:MucinousCarcinoma" }, { - "@id": "bts:SplenicHilarLymphNode" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:SternocleidomastoidMuscle" + "@id": "bts:Ganglioglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:SternocostalJoint" + "@id": "bts:HighGradeCarcinosarcoma" }, { - "@id": "bts:Stomach" + "@id": "bts:SubependymalGiantCellAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:SubclavianArtery" + "@id": "bts:SquamousCellCarcinoma;Metastatic;NOS" }, { - "@id": "bts:Subcutis" + "@id": "bts:MyeloidLeukemiaAssociatedWithDownSyndrome" }, { - "@id": "bts:Subglottis" + "@id": "bts:MeningealMelanomatosis" }, { - "@id": "bts:SublingualLymphNode" + "@id": "bts:NeuroepithelialTumorWithGlioneuronal-LikeFeatures" }, { - "@id": "bts:SublingualSalivaryGland" + "@id": "bts:SquamousCellCarcinoma;LargeCell;Nonkeratinizing;NOS" }, { - "@id": "bts:SubmandibularDuct" + "@id": "bts:Meningiomatosis;NOS" }, { - "@id": "bts:SubmandibularGland" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:SubmandibularLymphNode" + "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:SuperiorVenaCava" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:SuperiorWalloftheNasopharynx" + "@id": "bts:CNSEmbryonalTumor;NOS" }, { - "@id": "bts:Supraclavicular" + "@id": "bts:FavorAnaplasticEpendymoma" }, { - "@id": "bts:SupraclavicularLymphNode" + "@id": "bts:DiffuseGlioma" }, { - "@id": "bts:Supraglottis" + "@id": "bts:AdamantinomatousCraniopharyngioma(CNSWHOGrade1)" }, { - "@id": "bts:SuprasellarRegion" + "@id": "bts:Medulloblastoma;ClassicVariant;WHOGrade4" }, { - "@id": "bts:SupratentorialBrain" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:SympatheticNervousSystem" + "@id": "bts:GlioneuronalTumorWithFocalIncreasedAtypia" }, { - "@id": "bts:SynovialBursa" + "@id": "bts:HighGradeNeuroepithelialTumor" }, { - "@id": "bts:SynovialFluid" + "@id": "bts:SquamousCellCarcinoma;SmallCell;Nonkeratinizing" }, { - "@id": "bts:TailofthePancreas" + "@id": "bts:MixedPhenotypeAcuteLeukemiaWithT(V;11q23);MLLRearranged" }, { - "@id": "bts:TarsalBone" + "@id": "bts:AcuteMyeloidLeukemia;MinimalDifferentiation" }, { - "@id": "bts:TemporalBone" + "@id": "bts:FibrillaryAstrocytoma" }, { - "@id": "bts:TemporalLobe" + "@id": "bts:Chordoma;NOS" }, { - "@id": "bts:Tendon" + "@id": "bts:UndifferentiatedLeukemia" }, { - "@id": "bts:TendonSheath" + "@id": "bts:Myofibroma" }, { - "@id": "bts:TentoriumCerebelli" + "@id": "bts:Neoplasm;Malignant" }, { - "@id": "bts:Testis" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS;Low-GradeGlioma" }, { - "@id": "bts:Thalamus" + "@id": "bts:InvasiveDuctalCarcinoma" }, { - "@id": "bts:Thigh" + "@id": "bts:SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:ThirdVentricle" + "@id": "bts:EmbryonalRhabdomyosarcomaWithAnaplasticFeatures" }, { - "@id": "bts:ThoracicDuct" + "@id": "bts:High-GradeNeuroepithelialTumor" }, { - "@id": "bts:ThoracicEsophagus" + "@id": "bts:LowGradeGlioneuronalTumor" }, { - "@id": "bts:ThoracicLymphNode" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:Thorax" + "@id": "bts:AcuteMyeloidLeukemiaWithoutMaturation" }, { - "@id": "bts:ThymusGland" + "@id": "bts:AdenocarcinomaWithMixedSubtypes" }, { - "@id": "bts:ThyroglossalDuct" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHyperdiploidy" }, { - "@id": "bts:ThyroidCartilage" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS" }, { - "@id": "bts:ThyroidGland" + "@id": "bts:Hemangiosarcoma" }, { - "@id": "bts:Tibia" + "@id": "bts:Paraganglioma;NOS" }, { - "@id": "bts:Toe" + "@id": "bts:Medulloblastoma;Nodular/DesmoplasticWithAnaplastic/LargeCellFeatures;Non-WNT/Non-SHH;WHOGrade4" }, { - "@id": "bts:Toenail" + "@id": "bts:SignetRingCellCarcinoma" }, { - "@id": "bts:Tongue" + "@id": "bts:SpindleCellMelanoma;NOS" }, { - "@id": "bts:TonsillarFossa" + "@id": "bts:LobularAdenocarcinoma" }, { - "@id": "bts:TonsillarPillar" + "@id": "bts:UndiagnosedSpindleCellTumor" }, { - "@id": "bts:ToothSocket" + "@id": "bts:PilocyticAstrocytoma;WHOGrade1;KIAA1549-BRAFFusion" }, { - "@id": "bts:Trachea" + "@id": "bts:Meningioma" }, { - "@id": "bts:TracheobronchialLymphNode" + "@id": "bts:HepatosplenicT-CellLymphoma;PrecursorCellLymphoblasticLeukemia;NOS" }, { - "@id": "bts:Tragus" + "@id": "bts:MesenchymalChondrosarcoma" }, { - "@id": "bts:TransverseColon" + "@id": "bts:AnaplasticGanglioglioma" }, { - "@id": "bts:TrapeziusMuscle" + "@id": "bts:Osteosarcoma;NOS" }, { - "@id": "bts:TricepsBrachii" + "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:TrigeminalNerve" + "@id": "bts:EpendymomaWHOGrade3" }, { - "@id": "bts:TrochlearNerve" + "@id": "bts:LungAdenocarcinoma;NOS" }, { - "@id": "bts:TrueVocalCord" + "@id": "bts:LymphoproliferativeDisorder;NOS" }, { - "@id": "bts:Trunk" + "@id": "bts:AtypicalLymphoidInfiltrate" }, { - "@id": "bts:TunicaVaginalis" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:Ulna" + "@id": "bts:GenitalRhabdomyoma" }, { - "@id": "bts:UlnarArtery" + "@id": "bts:ChondroblasticOsteosarcoma" }, { - "@id": "bts:UlnarNerve" + "@id": "bts:Neuroepithelioma;NOS" }, { - "@id": "bts:Umbilicus" + "@id": "bts:MalignantEpithelioidAndMyxoidNeoplasm" }, { - "@id": "bts:Uncus" + "@id": "bts:Pancreatoblastoma" }, { - "@id": "bts:UndescendedTestes" + "@id": "bts:Nephroblastoma(WilmsTumor)" }, { - "@id": "bts:UpperExtremity" + "@id": "bts:MalignantGlioma" }, { - "@id": "bts:UpperGingiva" + "@id": "bts:EwingSarcoma" }, { - "@id": "bts:UpperLobeoftheLung" + "@id": "bts:AtypicalSmoothMuscleNeoplasm" }, { - "@id": "bts:UpperThirdoftheEsophagus" + "@id": "bts:AcuteMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Upper-InnerQuadrantoftheBreast" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:Upper-OuterQuadrantoftheBreast" + "@id": "bts:EpithelialTumor;Benign" }, { - "@id": "bts:Urachus" + "@id": "bts:FavorTeratoma" }, { - "@id": "bts:Ureter" + "@id": "bts:MalignantNeoplasmOfProstate" }, { - "@id": "bts:UretericOrifice" + "@id": "bts:Non-ClearCellRenalCellCarcinoma" }, { - "@id": "bts:UreteropelvicJunction" + "@id": "bts:Meningioma;NOS;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Urethra" + "@id": "bts:MelanoticSchwannoma;Other" }, { - "@id": "bts:UterineGland" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;WNT-Activated" }, { - "@id": "bts:UterineLigament" + "@id": "bts:CarcinosarcomaNOS" }, { - "@id": "bts:Uterus" + "@id": "bts:Plasmacytoma;Extramedullary" }, { - "@id": "bts:Uvea" + "@id": "bts:InfantileFibrosarcoma" }, { - "@id": "bts:Uvula" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Vagina" + "@id": "bts:CNSPrimativeNeuroectodermalTumor(PNET)" }, { - "@id": "bts:VaginalFornix" + "@id": "bts:Infiltratingductcarcinoma;NOS" }, { - "@id": "bts:VagusNerve" + "@id": "bts:PrecursorB-CellLymphoblasticLeukemia" }, { - "@id": "bts:Vallecula" + "@id": "bts:SquamousCellCarcinomaInSitu;NOS" }, { - "@id": "bts:VasDeferens" + "@id": "bts:AcuteMyeloidLeukemia;T(16;16)(P13;Q11)" }, { - "@id": "bts:Vein" + "@id": "bts:PapillaryTransitionalCellCarcinoma" }, { - "@id": "bts:VenaCava" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Vermis" + "@id": "bts:Low-GradeGlioneuronal;NeuronalTumor" }, { - "@id": "bts:Vertebra" + "@id": "bts:CombinedSmallCell-Adenocarcinoma" }, { - "@id": "bts:VertebralColumn" + "@id": "bts:HepatocellularCarcinoma;NOS" }, { - "@id": "bts:VisceralPleura" + "@id": "bts:SpindleCellCarcinoma;NOS" }, { - "@id": "bts:VocalCord" + "@id": "bts:Carcinoma;DiffuseType" }, { - "@id": "bts:Vulva" + "@id": "bts:LentiginousMelanocyticNevus" }, { - "@id": "bts:Waldeyer'sTonsillarRing" + "@id": "bts:Glioma;Malignant;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" }, { - "@id": "bts:WallofthePharynx" + "@id": "bts:SolitaryFibrousTumor;NOS" }, { - "@id": "bts:WristJoint" + "@id": "bts:Glioma;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:WristSkin" - } - ], - "sms:displayName": "Model Site of Origin", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ModelTumorSubtype", - "@type": "rdfs:Class", - "rdfs:comment": "The molecular subtype of the tumor associated with the model.", - "rdfs:label": "ModelTumorSubtype", - "rdfs:subClassOf": [ + "@id": "bts:GranulosaCellTumor;Malignant" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Model Tumor Subtype", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:ModelSpecies", - "@type": "rdfs:Class", - "rdfs:comment": "The species of origin corresponding to the model.", - "rdfs:label": "ModelSpecies", - "rdfs:subClassOf": [ + "@id": "bts:Ganglioneuroma;MaturingType;FavorableHistology" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:AfricanBushElephant" + "@id": "bts:InvasiveLobularCarcinoma" }, { - "@id": "bts:Armadillo" + "@id": "bts:Ganglioglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:AsianElephant" + "@id": "bts:BlandMyofibroblasticProliferationWithAssociatedFloridLymphoplasmacyticInflammation" }, { - "@id": "bts:Boar" + "@id": "bts:Medulloblastoma" }, { - "@id": "bts:Cat" + "@id": "bts:Hepatoblastoma" }, { - "@id": "bts:Chicken" + "@id": "bts:LowGradeGlial/GlioneuronalTumor" }, { - "@id": "bts:Cow" + "@id": 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"@id": "bts:Afatinib" + "@id": "bts:Adenocarcinoma" }, { - "@id": "bts:AfatinibDimaleate" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(9;22)(Q34;Q11.2);BCR-ABL1" }, { - "@id": "bts:Afimoxifene" + "@id": "bts:Hemangioendothelioma;Malignant" }, { - "@id": "bts:Afuresertib" + "@id": "bts:ChoroidPlexusNeoplasm" }, { - "@id": "bts:AgatolimodSodium" + "@id": "bts:Craniopharyngioma;Adamantinomatous;AdamantinomatousCraniopharyngioma" }, { - "@id": "bts:Agerafenib" + "@id": "bts:Pinealoblastoma" }, { - "@id": "bts:AglatimageneBesadenovec" + "@id": "bts:LargeCellMedulloblastoma;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" }, { - "@id": "bts:AgonisticAnti-CD40MonoclonalAntibodyADC-1013" + "@id": "bts:SpindleCellSarcoma" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyINCAGN01949" + "@id": "bts:Gliosarcoma" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyMEDI6469" + "@id": "bts:CentralPrimitiveNeuroectodermalTumor" }, { - "@id": "bts:AKR1C3-activatedProdrugOBI-3424" + "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade3" }, { - "@id": "bts:AKT1/2InhibitorBAY1125976" + "@id": "bts:Astrocytoma;Benign" }, { - "@id": "bts:AKTInhibitorARQ092" + "@id": "bts:PleomorphicRhabdomyosarcoma;AdultType" }, { - "@id": "bts:AktInhibitorLY2780301" + "@id": "bts:MyeloidSarcoma" }, { - "@id": "bts:AktInhibitorMK2206" + "@id": "bts:Glioma;Malignant;Other;OtherLow-GradeB-CellLymphomasOfTheCNS" }, { - "@id": "bts:AktInhibitorSR13668" + "@id": "bts:Ganglioneuroma" }, { - "@id": "bts:Akt/ERKInhibitorONC201" + "@id": "bts:Neoplasm;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:AlacizumabPegol" + "@id": "bts:ClearCellRenalCellCarcinoma" }, { - "@id": "bts:Alanosine" + "@id": "bts:Ependymoma;NOS;AtypicalMeningioma" }, { - "@id": "bts:Albumin-bindingCisplatinProdrugBTP-114" + "@id": "bts:Oligodendroglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:Aldesleukin" + "@id": "bts:MalignantPeripheralNerveSheathTumor" }, { - "@id": "bts:Aldoxorubicin" + "@id": "bts:Glioma;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" }, { - "@id": "bts:Alectinib" + "@id": "bts:Sertoli-LeydigCellTumorOfIntermediateDifferentiation;NOS" }, { - "@id": "bts:Alefacept" + "@id": "bts:DesmoplasticNodularMedulloblastoma" }, { - "@id": "bts:Alemtuzumab" + "@id": "bts:PapillaryMicrocarcinoma" }, { - "@id": "bts:Alestramustine" + "@id": "bts:Craniopharyngioma;NOS" }, { - "@id": "bts:AlflutinibMesylate" + "@id": "bts:LowGradeGlialNeoplasm" }, { - "@id": "bts:Algenpantucel-L" + "@id": "bts:Leiomyosarcoma;NOS" }, { - "@id": "bts:Alisertib" - }, + "@id": "bts:FollicularAdenocarcinoma;NOS" + } + ], + "sms:displayName": "Model Primary Diagnosis", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ModelPrimarySite", + "@type": "rdfs:Class", + "rdfs:comment": "Primary site in the body associated with the primary diagnosis.", + "rdfs:label": "ModelPrimarySite", + "rdfs:subClassOf": [ { - "@id": "bts:Alitretinoin" + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Abdomen" }, { - "@id": "bts:ALKInhibitor" + "@id": "bts:AbdominalWall" }, { - "@id": "bts:ALKInhibitorASP3026" + "@id": "bts:Acetabulum" }, { - "@id": "bts:ALKInhibitorPLB1003" + "@id": "bts:AdjacentOrgan" }, { - "@id": "bts:ALKInhibitorRO5424802" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:ALKInhibitorTAE684" + "@id": "bts:Anal/Perianal" }, { - "@id": "bts:ALKInhibitorWX-0593" + "@id": "bts:AnkleJoint" }, { - "@id": "bts:ALK-2InhibitorTP-0184" + "@id": "bts:AnteriorSkullBase" }, { - "@id": "bts:ALK-FAKInhibitorCEP-37440" + "@id": "bts:Anus" }, { - "@id": "bts:ALK/c-MetInhibitorTQ-B3139" + "@id": "bts:Appendix" }, { - "@id": "bts:ALK/FAK/Pyk2InhibitorCT-707" + "@id": "bts:AsciticFluid" }, { - "@id": "bts:ALK/ROS1/MetInhibitorTQ-B3101" + "@id": "bts:Axilla" }, { - "@id": "bts:ALK/TRKInhibitorTSR-011" + "@id": "bts:AxillaryNodes" }, { - "@id": "bts:Alkotinib" + "@id": "bts:Bladder" }, { - "@id": "bts:AllodepletedTCellImmunotherapeuticATIR101" + "@id": "bts:Bladder/Prostate" }, { - "@id": "bts:AllogeneicAnti-BCMACAR-transducedT-cellsALLO-715" + "@id": "bts:Bone" }, { - "@id": "bts:AllogeneicAnti-BCMA-CART-cellsPBCAR269A" + "@id": "bts:BoneFace" }, { - "@id": "bts:AllogeneicAnti-BCMA/CS1BispecificCAR-TCells" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:AllogeneicAnti-CD19CART-cellsALLO-501A" + "@id": "bts:BoneorBoneMarrow" }, { - "@id": "bts:AllogeneicAnti-CD19UniversalCAR-TCellsCTA101" + "@id": "bts:Brain" }, { - "@id": "bts:AllogeneicAnti-CD19-CART-cellsPBCAR0191" + "@id": "bts:Brain/Leptomeninges" }, { - "@id": "bts:AllogeneicAnti-CD20CART-cellsLUCAR-20S" + "@id": "bts:Breast" }, { - "@id": "bts:AllogeneicAnti-CD20-CART-cellsPBCAR20A" + "@id": "bts:Bronchus" }, { - "@id": "bts:AllogeneicCD22-specificUniversalCAR-expressingT-lymphocytesUCART22" + "@id": "bts:Buttock" }, { - "@id": "bts:AllogeneicCD3-CD19-CD57+NKG2C+NKCellsFATE-NK100" + "@id": "bts:Calcaneum" }, { - "@id": "bts:AllogeneicCD56-positiveCD3-negativeNaturalKillerCellsCYNK-001" + "@id": "bts:CarpalBone" }, { - "@id": "bts:AllogeneicCD8+Leukemia-associatedAntigensSpecificTCellsNEXI-001" + "@id": "bts:CaudaEquinaSpinalCord" }, { - 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"@id": "bts:AlvespimycinHydrochloride" + "@id": "bts:FibulaHead" }, { - "@id": "bts:Alvocidib" + "@id": "bts:Finger" }, { - "@id": "bts:AlvocidibHydrochloride" + "@id": "bts:Foot" }, { - "@id": "bts:AlvocidibProdrugTP-1287" + "@id": "bts:FootBone" }, { - "@id": "bts:Amatuximab" + "@id": "bts:FootJoint" }, { - "@id": "bts:Ambamustine" + "@id": "bts:FootPhalanges" }, { - "@id": "bts:Ambazone" + "@id": "bts:Forearm" }, { - "@id": "bts:Amblyomin-X" + "@id": "bts:FourthVentricle" }, { - "@id": "bts:Amcasertib" + "@id": "bts:FrontalBone" }, { - "@id": "bts:Ametantrone" + "@id": "bts:FrontalCortex" }, { - "@id": "bts:Amifostine" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:AminoAcidInjection" + "@id": "bts:Gallbladder" }, { - "@id": "bts:Aminocamptothecin" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:AminocamptothecinColloidalDispersion" + "@id": "bts:Hand" }, { - "@id": "bts:AminoflavoneProdrugAFP464" + "@id": "bts:HandBone" }, { - "@id": "bts:Aminopterin" + "@id": "bts:HandJoint" }, { - 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"@id": "bts:Apomab" + "@id": "bts:Penis" }, { - "@id": "bts:Apomine" + "@id": "bts:Pericardium" }, { - "@id": "bts:ApoptosisInducerBZL101" + "@id": "bts:Perineum" }, { - "@id": "bts:ApoptosisInducerGCS-100" + "@id": "bts:PeripheralNerve" }, { - "@id": "bts:ApoptosisInducerMPC-2130" + "@id": "bts:PeritonealCavity" }, { - "@id": "bts:Apricoxib" + "@id": "bts:Peritoneum" }, { - "@id": "bts:Aprinocarsen" + "@id": "bts:PharyngealTonsil" }, { - "@id": "bts:Aprutumab" + "@id": "bts:Pharynx" }, { - "@id": "bts:AprutumabIxadotin" + "@id": "bts:PiaMater" }, { - "@id": "bts:ARAntagonistBMS-641988" + "@id": "bts:PinealGland" }, { - "@id": "bts:ArabinoxylanCompoundMGN3" + "@id": "bts:PituitaryGland" }, { - "@id": "bts:Aranose" + "@id": "bts:Placenta" }, { - "@id": "bts:ARCFusionProteinSL-279252" + "@id": "bts:PlantarFascia" }, { - "@id": "bts:Archexin" + "@id": "bts:PlantarRegion" }, { - "@id": "bts:Arcitumomab" + "@id": "bts:Pleura" }, { - "@id": "bts:Arfolitixorin" + "@id": "bts:PonsVarolii" }, { - "@id": "bts:ArginaseInhibitorINCB001158" + "@id": "bts:PoplitealLymphNode" }, { - "@id": "bts:ArginineButyrate" + "@id": "bts:PortalLymphNode" }, { - "@id": "bts:ArnebiaIndigoJadePearlTopicalCream" + "@id": "bts:PostcricoidRegion" }, { - "@id": "bts:ArsenicTrioxide" + "@id": "bts:PosteriorCranialFossa" }, { - "@id": "bts:ArsenicTrioxideCapsuleFormulationORH2014" + "@id": "bts:PosteriorMediastinum" }, { - "@id": "bts:ArtemetherSublingualSpray" + "@id": "bts:PosteriorWalloftheBladder" }, { - "@id": "bts:ArtemisininDimer" + "@id": "bts:PosteriorWalloftheHypopharynx" }, { - "@id": "bts:Artesunate" + "@id": "bts:PosteriorWalloftheNasopharynx" }, { - "@id": "bts:ArugulaSeedPowder" + "@id": "bts:PosteriorWalloftheOropharynx" }, { - "@id": "bts:ArylHydrocarbonReceptorAntagonistBAY2416964" + "@id": "bts:PosteriorWallofthePharynx" }, { - "@id": "bts:ArylHydrocarbonReceptorInhibitorIK-175" + "@id": "bts:PreauricularLymphNode" }, { - "@id": "bts:Asaley" + "@id": "bts:ProstateGland" }, { - "@id": "bts:Asciminib" + "@id": "bts:ProstaticUtricle" }, { - "@id": "bts:Ascrinvacumab" + "@id": "bts:PsoasMuscle" }, { - "@id": "bts:AshwagandhaRootPowderExtract" + "@id": "bts:PubicBone" }, { - "@id": "bts:ASP4132" + "@id": "bts:PubicSymphysis" }, { - "@id": "bts:Aspacytarabine" + "@id": "bts:Pulmonary" }, { - "@id": "bts:Asparaginase" + "@id": "bts:PulmonaryHilarLymphNode" }, { - "@id": "bts:AsparaginaseErwiniachrysanthemi" + "@id": "bts:Putamen" }, { - "@id": "bts:AstatineAt211Anti-CD38MonoclonalAntibodyOKT10-B10" + "@id": "bts:Pylorus" }, { - "@id": "bts:AstatineAt211Anti-CD45MonoclonalAntibodyBC8-B10" + "@id": "bts:PyriformSinus" }, { - "@id": "bts:Astuprotimut-R" + "@id": "bts:QuadricepsMuscleoftheThigh" }, { - "@id": "bts:Asulacrine" + "@id": "bts:RadialArtery" }, { - "@id": "bts:AsulacrineIsethionate" + "@id": "bts:RadialNerve" }, { - "@id": "bts:Asunercept" + "@id": "bts:RadiusBone" }, { - "@id": "bts:At211MonoclonalAntibody81C6" + "@id": "bts:RathkePouch" }, { - "@id": "bts:Atamestane" + "@id": "bts:RectosigmoidColon" }, { - "@id": "bts:Atezolizumab" + "@id": "bts:RectosigmoidRegion" }, { - "@id": "bts:Atiprimod" + "@id": "bts:Rectum" }, { - "@id": "bts:AtiprimodDihydrochloride" + "@id": "bts:RectusAbdominis" }, { - "@id": "bts:AtiprimodDimaleate" + "@id": "bts:Renal" }, { - "@id": "bts:ATMInhibitorM3541" + "@id": "bts:RenalArtery" }, { - "@id": "bts:ATMKinaseInhibitorAZD0156" + "@id": "bts:RenalCalyx" }, { - "@id": "bts:ATMKinaseInhibitorAZD1390" + "@id": "bts:RenalPelvis" }, { - "@id": "bts:AtorvastatinCalcium" + "@id": "bts:ReticuloendothelialSystem" }, { - "@id": "bts:AtorvastatinSodium" + "@id": "bts:Retina" }, { - "@id": "bts:ATRInhibitorRP-3500" + "@id": "bts:RetromolarTrigone" }, { - "@id": "bts:ATRKinaseInhibitorBAY1895344" + "@id": "bts:RetroperitonealLymphNode" }, { - "@id": "bts:ATRKinaseInhibitorM1774" + "@id": "bts:Retroperitoneum" }, { - "@id": "bts:ATRKinaseInhibitorM6620" + "@id": "bts:RetropharyngealLymphNode" }, { - "@id": "bts:ATRKinaseInhibitorVX-803" + "@id": "bts:RoundLigamentoftheUterus" }, { - "@id": "bts:AtrasentanHydrochloride" + "@id": "bts:SacralBone" }, { - "@id": "bts:AttenuatedListeriamonocytogenesCRS-100" + "@id": "bts:SacralLymphNode" }, { - "@id": "bts:AttenuatedLiveListeriaEncodingHPV16E7VaccineADXS11-001" + "@id": "bts:SacralNerve" }, { - "@id": "bts:AttenuatedMeaslesVirusEncodingSCDTransgeneTMV-018" + "@id": "bts:SacralPlexus" }, { - "@id": "bts:Atuveciclib" + "@id": "bts:SalivaryGland" }, { - "@id": "bts:Audencel" + "@id": "bts:ScaleneLymphNode" }, { - "@id": "bts:Auranofin" + "@id": "bts:Scalp" }, { - "@id": "bts:AuroraAKinaseInhibitorLY3295668" + "@id": "bts:Scapula" }, { - "@id": "bts:AuroraAKinaseInhibitorLY3295668Erbumine" + "@id": "bts:SciaticNerve" }, { - "@id": "bts:AuroraAKinaseInhibitorMK5108" + "@id": "bts:Sclera" }, { - "@id": "bts:AuroraAKinaseInhibitorTAS-119" + "@id": "bts:Scrotum" }, { - "@id": "bts:AuroraAKinase/TyrosineKinaseInhibitorENMD-2076" + "@id": "bts:SellaTurcica" }, { - "@id": "bts:AuroraBSerine/ThreonineKinaseInhibitorTAK-901" + "@id": "bts:SeminalVesicle" }, { - "@id": "bts:AuroraB/CKinaseInhibitorGSK1070916A" + "@id": "bts:Shoulder" }, { - "@id": "bts:AurorakinaseA/BinhibitorTT-00420" + "@id": "bts:ShoulderGirdle" }, { - "@id": "bts:AuroraKinaseInhibitorAMG900" + "@id": "bts:ShoulderJoint" }, { - "@id": "bts:AuroraKinaseInhibitorBI811283" + "@id": "bts:SigmoidColon" }, { - "@id": "bts:AuroraKinaseInhibitorMLN8054" + "@id": "bts:SkeletalMuscleTissue" }, { - "@id": "bts:AuroraKinaseInhibitorPF-03814735" + "@id": "bts:Skin" }, { - "@id": "bts:AuroraKinaseInhibitorSNS-314" + "@id": "bts:SkinOfTheAxilla" }, { - "@id": "bts:AuroraKinaseInhibitorTTP607" + "@id": "bts:SkinoftheFace" }, { - "@id": "bts:AuroraKinase/VEGFR2InhibitorCYC116" + "@id": "bts:SkinoftheLip" }, { - "@id": "bts:AutologousACTR-CD16-CD28-expressingT-lymphocytesACTR707" + "@id": "bts:SkinoftheLowerLimbandHip" }, { - "@id": "bts:AutologousAFPSpecificTCellReceptorTransducedTCellsC-TCR055" + "@id": "bts:SkinoftheScalpandNeck" }, { - "@id": "bts:AutologousAnti-BCMACART-cellsPHE885" + "@id": "bts:SkinoftheTrunk" }, { - "@id": "bts:AutologousAnti-BCMACAR-transducedT-cellsKITE-585" + "@id": "bts:SkinoftheUpperLimbandShoulder" }, { - "@id": "bts:AutologousAnti-BCMACD8+CART-cellsDescartes-11" + "@id": "bts:Skull" }, { - "@id": "bts:AutologousAnti-BCMA-CARExpressingStemMemoryT-cellsP-BCMA-101" + "@id": "bts:Skullcap" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingCD4+/CD8+T-lymphocytesJCARH125" + "@id": "bts:SmallIntestine" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingMemoryT-lymphocytesbb21217" + "@id": "bts:SpermaticCord" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingT-cellsC-CAR088" + "@id": "bts:SphenoidBone" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingT-cellsCT053" + "@id": "bts:SphenoidSinus" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-expressingCD4+/CD8+T-lymphocytesFCARH143" + "@id": "bts:SphincterofOddi" }, { - "@id": "bts:AutologousAnti-CD123CAR-TCells" + "@id": "bts:SpinalCord" }, { - "@id": "bts:AutologousAnti-CD19CART-cells19(T2)28z1xx" + "@id": "bts:SpinalCordDuraMater" }, { - "@id": "bts:AutologousAnti-CD19CART-cellsIM19" + "@id": "bts:SpinalMeninges" }, { - "@id": "bts:AutologousAnti-CD19CARTCR-zeta/4-1BB-transducedT-lymphocyteshuCART19" + "@id": "bts:SpinalNerve" }, { - "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-expressingT-cellsCNCT19" + "@id": "bts:Spleen" }, { - "@id": "bts:AutologousAnti-CD19CAR-CD28T-cellsET019002" + "@id": "bts:SplenicFlexure" }, { - "@id": "bts:AutologousAnti-CD19CAR-CD3zeta-4-1BB-expressingT-cellsPZ01" + "@id": "bts:SplenicHilarLymphNode" }, { - "@id": "bts:AutologousAnti-CD19CAR-expressingT-lymphocytesCLIC-1901" + "@id": "bts:SternocleidomastoidMuscle" }, { - "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsAUTO1" + "@id": "bts:SternocostalJoint" }, { - "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsSJCAR19" + "@id": "bts:Stomach" }, { - "@id": "bts:AutologousAnti-CD19T-cellReceptorTcellsET190L1" + "@id": "bts:SubclavianArtery" }, { - "@id": "bts:AutologousAnti-CD19TAC-TcellsTAC01-CD19" + "@id": "bts:Subcutis" }, { - "@id": "bts:AutologousAnti-CD19/CD20BispecificNanobody-basedCAR-Tcells" + "@id": "bts:Subglottis" }, { - "@id": "bts:AutologousAnti-CD19/CD22CART-cellsAUTO3" + "@id": "bts:SublingualLymphNode" }, { - "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressingCD4+/CD8+CentralMemoryT-lymphocytesJCAR014" + "@id": "bts:SublingualSalivaryGland" }, { - "@id": "bts:AutologousAnti-CD19CAR-HER2t/CD22CAR-EGFRt-expressingT-cells" + "@id": "bts:SubmandibularDuct" }, { - "@id": "bts:AutologousAnti-CD20CARTransducedCD4/CD8EnrichedT-cellsMB-CART20.1" + "@id": "bts:SubmandibularGland" }, { - "@id": "bts:AutologousAnti-CD22CAR-4-1BB-TCRz-transducedT-lymphocytesCART22-65s" + "@id": "bts:SubmandibularLymphNode" }, { - "@id": "bts:AutologousAnti-EGFRCAR-transducedCXCR5-modifiedT-lymphocytes" + "@id": "bts:SuperiorVenaCava" }, { - "@id": "bts:AutologousAnti-FLT3CARTCellsAMG553" + "@id": "bts:SuperiorWalloftheNasopharynx" }, { - "@id": "bts:AutologousAnti-HLA-A*02/AFPTCRm-expressingT-cellsET140202" + "@id": "bts:Supraclavicular" }, { - "@id": "bts:AutologousAnti-HLA-A*0201/AFPCART-cellsET1402L1" + "@id": "bts:SupraclavicularLymphNode" }, { - "@id": "bts:AutologousAnti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressingT-cellsAIC100" + "@id": "bts:Supraglottis" }, { - "@id": "bts:AutologousAnti-kappaLightChainCAR-CD28-expressingT-lymphocytes" + "@id": "bts:SuprasellarRegion" }, { - "@id": "bts:AutologousAnti-NY-ESO-1/LAGE-1TCR-transducedc259TLymphocytesGSK3377794" + "@id": "bts:SupratentorialBrain" }, { - "@id": "bts:AutologousAnti-PD-1Antibody-activatedTumor-infiltratingLymphocytes" + "@id": "bts:SympatheticNervousSystem" }, { - "@id": "bts:AutologousAnti-PSMACAR-TCellsP-PSMA-101" + "@id": "bts:SynovialBursa" }, { - "@id": "bts:AutologousAXL-targetedCART-cellsCCT301-38" + "@id": "bts:SynovialFluid" }, { - "@id": "bts:AutologousB-cell/Monocyte-presentingHER2/neuAntigenVaccineBVAC-B" + "@id": "bts:TailofthePancreas" }, { - "@id": "bts:AutologousBCMA-targetedCARTCellsCC-98633" + "@id": "bts:TarsalBone" }, { - "@id": "bts:AutologousBCMA-targetedCARTCellsLCAR-B4822M" + "@id": "bts:TemporalBone" }, { - "@id": "bts:AutologousBi-epitopeBCMA-targetedCART-cellsJNJ-68284528" + "@id": "bts:TemporalLobe" }, { - "@id": "bts:AutologousBispecificBCMA/CD19-targetedCAR-TCellsGC012F" + "@id": "bts:Tendon" }, { - "@id": "bts:AutologousBispecificCD19/CD22-targetedCAR-TCellsGC022" + "@id": "bts:TendonSheath" }, { - "@id": "bts:AutologousBoneMarrow-derivedCD34/CXCR4-positiveStemCellsAMR-001" + "@id": "bts:TentoriumCerebelli" }, { - "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3005" + "@id": "bts:Testis" }, { - "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3006" + "@id": "bts:Thalamus" }, { - "@id": "bts:AutologousCD123-4SCAR-expressingT-cells4SCAR123" + "@id": "bts:Thigh" }, { - "@id": "bts:AutologousCD19CAR-expressingCD4+/CD8+T-cellsMB-CART19.1" + "@id": "bts:ThirdVentricle" }, { - "@id": "bts:AutologousCD19-targetedCARTCellsCC-97540" + "@id": "bts:ThoracicDuct" }, { - "@id": "bts:AutologousCD19-targetedCARTCellsJWCAR029" + "@id": "bts:ThoracicEsophagus" }, { - "@id": "bts:AutologousCD19-targetedCAR-TCellsGC007F" + "@id": "bts:ThoracicLymphNode" }, { - "@id": "bts:AutologousCD19/PD-1BispecificCAR-TCells" + "@id": "bts:Thorax" }, { - "@id": "bts:AutologousCD20-4SCAR-expressingT-cells4SCAR20" + "@id": "bts:ThymusGland" }, { - "@id": "bts:AutologousCD22-4SCAR-expressingT-cells4SCAR22" + "@id": "bts:ThyroglossalDuct" }, { - "@id": "bts:AutologousCD38-4SCAR-expressingT-cells4SCAR38" + "@id": "bts:ThyroidCartilage" }, { - "@id": "bts:AutologousClonalNeoantigenTCellsATL001" + "@id": "bts:ThyroidGland" }, { - "@id": "bts:AutologousCRISPR-editedAnti-CD19CARTCellsXYF19" + "@id": "bts:Tibia" }, { - "@id": "bts:AutologousDeepIL-15PrimedT-cellsTRQ15-01" + "@id": "bts:Toe" }, { - "@id": "bts:AutologousDendriticCellVaccineACT2001" + "@id": "bts:Toenail" }, { - "@id": "bts:AutologousDendriticCell-basedImmunotherapeuticAV0113" + "@id": "bts:Tongue" }, { - "@id": "bts:AutologousFRa-4SCAR-expressingT-cells4SCAR-FRa" + "@id": "bts:TonsillarFossa" }, { - "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032CD8alphaTCells" + "@id": "bts:TonsillarPillar" }, { - "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032TCells" + "@id": "bts:ToothSocket" }, { - "@id": "bts:AutologousHeat-ShockProtein70PeptideVaccineAG-858" + "@id": "bts:Trachea" }, { - "@id": "bts:AutologousHPV16E7-specificHLA-A*02:01-restrictedTCRGeneEngineeredLymphocytesKITE-439" + "@id": "bts:TracheobronchialLymphNode" }, { - "@id": "bts:AutologousLMP1/LMP2/EBNA1-specificHLA-A02:01/24:02/11:01-restrictedTCR-expressingT-lymphocytesYT-E001" + "@id": "bts:Tragus" }, { - "@id": "bts:AutologousMAGE-A3/A6-specificTCRGene-engineeredLymphocytesKITE-718" + "@id": "bts:TransverseColon" }, { - "@id": "bts:AutologousMCPyV-specificHLA-A02-restrictedTCR-transducedCD4+andCD8+T-cellsFH-MCVA2TCR" + "@id": "bts:TrapeziusMuscle" }, { - "@id": "bts:AutologousMesenchymalStemCellsApceth101" + "@id": "bts:TricepsBrachii" }, { - "@id": "bts:AutologousMesothelin-specificHumanmRNACAR-transfectedPBMCsMCY-M11" + "@id": "bts:TrigeminalNerve" }, { - "@id": "bts:AutologousMonocyte-derivedLysate-pulsedDendriticCellVaccinePV-001-DC" + "@id": "bts:TrochlearNerve" }, { - "@id": "bts:AutologousMulti-lineagePotentialCells" + "@id": "bts:TrueVocalCord" }, { - "@id": "bts:AutologousNectin-4/FAP-targetedCAR-TCells" + "@id": "bts:Trunk" }, { - "@id": "bts:AutologousNKG2DCART-cellsCYAD-02" + "@id": "bts:TunicaVaginalis" }, { - "@id": "bts:AutologousNKG2DCAR-CD3zeta-DAP10-expressingT-LymphocytesCYAD-01" + "@id": "bts:Ulna" }, { - "@id": "bts:AutologousPancreaticAdenocarcinomaLysateandmRNA-loadedDendriticCellVaccine" + "@id": "bts:UlnarArtery" }, { - "@id": "bts:AutologousPeripheralBloodLymphocytesfromIbrutinib-treatedChronicLymphocyticLeukemiaPatientsIOV-2001" + "@id": "bts:UlnarNerve" }, { - "@id": "bts:AutologousProstateCancerAntigen-expressingDendriticCellVaccineBPX-101" + "@id": "bts:Umbilicus" }, { - "@id": "bts:AutologousProstateStemCellAntigen-specificCARTCellsBPX-601" + "@id": "bts:Uncus" }, { - "@id": "bts:AutologousRapamycin-resistantTh1/Tc1CellsRAPA-201" + "@id": "bts:UndescendedTestes" }, { - "@id": "bts:AutologousROR2-targetedCART-cellsCCT301-59" + "@id": "bts:UpperExtremity" }, { - "@id": "bts:AutologousTAAs-loadedAutologousDendriticCellsAV-GBM-1" + "@id": "bts:UpperGingiva" }, { - 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"@id": "bts:EnterococcusgallinarumStrainMRx0518" + "@id": "bts:Anti-TIGITMonoclonalAntibodyBGB-A1217" }, { - "@id": "bts:Entinostat" + "@id": "bts:Anti-TIGITMonoclonalAntibodyBMS-986207" }, { - "@id": "bts:Entolimod" + "@id": "bts:Anti-TIGITMonoclonalAntibodyCOM902" }, { - "@id": "bts:Entospletinib" + "@id": "bts:Anti-TIGITMonoclonalAntibodyOMP-313M32" }, { - "@id": "bts:Entrectinib" + "@id": "bts:Anti-TIGITMonoclonalAntibodySGN-TGT" }, { - "@id": "bts:Envafolimab" + "@id": "bts:Anti-TIM-3AntibodyBMS-986258" }, { - "@id": "bts:Enzalutamide" + "@id": "bts:Anti-TIM-3MonoclonalAntibodyBGB-A425" }, { - "@id": "bts:Enzastaurin" + "@id": "bts:Anti-TIM-3MonoclonalAntibodyINCAGN02390" }, { - "@id": "bts:EnzastaurinHydrochloride" + "@id": "bts:Anti-TIM-3MonoclonalAntibodyMBG453" }, { - "@id": "bts:EP2/EP4AntagonistTPST-1495" + "@id": "bts:Anti-TIM-3MonoclonalAntibodySym023" }, { - "@id": "bts:EP4AntagonistINV-1120" + "@id": "bts:Anti-TIM-3MonoclonalAntibodyTSR-022" }, { - "@id": "bts:EP4AntagonistONO-4578" + "@id": "bts:Anti-TIM3MonoclonalAntibodyLY3321367" }, { - 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"@id": "bts:FAKInhibitorVS-4718" + "@id": "bts:AsparaginaseErwiniachrysanthemi" }, { - "@id": "bts:FAK/ALK/ROS1InhibitorAPG-2449" + "@id": "bts:AstatineAt211Anti-CD38MonoclonalAntibodyOKT10-B10" }, { - "@id": "bts:Falimarev" + "@id": "bts:AstatineAt211Anti-CD45MonoclonalAntibodyBC8-B10" }, { - "@id": "bts:Famitinib" + "@id": "bts:Astuprotimut-R" }, { - "@id": "bts:FAP/4-1BB-targetingDARPinMP0310" + "@id": "bts:Asulacrine" }, { - "@id": "bts:FAP/4-1BB-targetingFusionProteinRO7122290" + "@id": "bts:AsulacrineIsethionate" }, { - "@id": "bts:Farletuzumab" + "@id": "bts:Asunercept" }, { - "@id": "bts:Farnesyltransferase/GeranylgeranyltransferaseInhibitorL-778;123" + "@id": "bts:At211MonoclonalAntibody81C6" }, { - "@id": "bts:FasLigand-treatedAllogeneicMobilizedPeripheralBloodCells" + "@id": "bts:Atamestane" }, { - "@id": "bts:FasReceptorAgonistAPO010" + "@id": "bts:Atezolizumab" }, { - "@id": "bts:FascinInhibitorNP-G2-044" + "@id": "bts:Atiprimod" }, { - "@id": "bts:FASNInhibitorTVB-2640" + "@id": "bts:AtiprimodDihydrochloride" }, { - "@id": "bts:Favezelimab" + "@id": "bts:AtiprimodDimaleate" }, { - "@id": "bts:Fazarabine" + "@id": "bts:ATMInhibitorM3541" }, { - "@id": "bts:Fc-engineeredAnti-CD40AgonistAntibody2141-V11" + "@id": "bts:ATMKinaseInhibitorAZD0156" }, { - "@id": "bts:Febuxostat" + "@id": "bts:ATMKinaseInhibitorAZD1390" }, { - "@id": "bts:Fedratinib" + "@id": "bts:AtorvastatinCalcium" }, { - "@id": "bts:FedratinibHydrochloride" + "@id": "bts:AtorvastatinSodium" }, { - "@id": "bts:Feladilimab" + "@id": "bts:ATRInhibitorRP-3500" }, { - "@id": "bts:Felzartamab" + "@id": "bts:ATRKinaseInhibitorBAY1895344" }, { - "@id": "bts:Fenebrutinib" + "@id": "bts:ATRKinaseInhibitorM1774" }, { - "@id": "bts:Fenretinide" + "@id": "bts:ATRKinaseInhibitorM6620" }, { - "@id": "bts:FenretinideLipidMatrix" + "@id": "bts:ATRKinaseInhibitorVX-803" }, { - "@id": "bts:FenretinidePhospholipidSuspensionST-001" + "@id": "bts:AtrasentanHydrochloride" }, { - "@id": "bts:FGFReceptorAntagonistHGS1036" + "@id": "bts:AttenuatedListeriamonocytogenesCRS-100" }, { - "@id": "bts:FGF/FGFRPathwayInhibitorE7090" + "@id": "bts:AttenuatedLiveListeriaEncodingHPV16E7VaccineADXS11-001" }, { - "@id": "bts:FGFRInhibitorASP5878" + "@id": "bts:AttenuatedMeaslesVirusEncodingSCDTransgeneTMV-018" }, { - "@id": "bts:FGFRInhibitorAZD4547" + "@id": "bts:Atuveciclib" }, { - "@id": "bts:FGFRInhibitorCPL304110" + "@id": "bts:Audencel" }, { - "@id": "bts:FGFRInhibitorDebio1347" + "@id": "bts:Auranofin" }, { - "@id": "bts:FGFRInhibitorTAS-120" + "@id": "bts:AuroraAKinaseInhibitorLY3295668" }, { - "@id": "bts:FGFR/CSF-1RInhibitor3D185" + "@id": "bts:AuroraAKinaseInhibitorLY3295668Erbumine" }, { - "@id": "bts:FGFR/VEGFR/PDGFR/FLT3/SRCInhibitorXL999" + "@id": "bts:AuroraAKinaseInhibitorMK5108" }, { - "@id": "bts:FGFR1/2/3InhibitorHMPL-453" + "@id": "bts:AuroraAKinaseInhibitorTAS-119" }, { - "@id": "bts:FGFR2InhibitorRLY-4008" + "@id": "bts:AuroraAKinase/TyrosineKinaseInhibitorENMD-2076" }, { - "@id": "bts:FGFR4AntagonistINCB062079" + "@id": "bts:AuroraBSerine/ThreonineKinaseInhibitorTAK-901" }, { - 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"@id": "bts:Indicine-N-Oxide" + "@id": "bts:Capecitabine" }, { - "@id": "bts:Indisulam" + "@id": "bts:CapecitabineRapidlyDisintegratingTablet" }, { - "@id": "bts:IndividualizedMVA-basedVaccineTG4050" + "@id": "bts:Capivasertib" }, { - "@id": "bts:IndocyanineGreen-labeledPolymericMicellesONM-100" + "@id": "bts:Capmatinib" }, { - "@id": "bts:Indole-3-Carbinol" + "@id": "bts:Captopril" }, { - "@id": "bts:Indomethacin" + "@id": "bts:CART-CellsAMG119" }, { - "@id": "bts:Indoximod" + "@id": "bts:Caracemide" }, { - "@id": "bts:IndoximodProdrugNLG802" + "@id": "bts:Carbendazim" }, { - "@id": "bts:IndusatumabVedotin" + "@id": "bts:Carbetimer" }, { - "@id": "bts:Inebilizumab" + "@id": "bts:Carbogen" }, { - "@id": "bts:Inecalcitol" + "@id": "bts:CarbonC14-pamiparib" }, { - "@id": "bts:Infigratinib" + "@id": "bts:Carboplatin" }, { - "@id": "bts:InfigratinibMesylate" + "@id": "bts:Carboquone" }, { - "@id": "bts:Infliximab" + "@id": "bts:Carboxyamidotriazole" }, { - "@id": "bts:IngenolMebutate" + "@id": "bts:CarboxyamidotriazoleOrotate" }, { - "@id": "bts:IngenolMebutateGel" + "@id": "bts:CarboxyphenylRetinamide" }, { - "@id": "bts:Iniparib" + "@id": "bts:Carfilzomib" }, { - "@id": "bts:INKTCellAgonistABX196" + "@id": "bts:Caricotamide/Tretazicar" }, { - "@id": "bts:InnateImmunostimulatorrBBX-01" + "@id": "bts:Carlumab" }, { - "@id": "bts:INO-1001" + "@id": "bts:Carmofur" }, { - "@id": "bts:InodiftageneVixteplasmid" + "@id": "bts:Carmustine" }, { - "@id": "bts:INOSDimerizationInhibitorASP9853" + "@id": "bts:CarmustineImplant" }, { - "@id": "bts:Inosine5'-monophosphateDehydrogenaseInhibitorFF-10501-01" + "@id": "bts:CarmustineinEthanol" }, { - "@id": "bts:InosineMonophosphateDehydrogenaseInhibitorAVN944" + "@id": "bts:CarmustineSustained-ReleaseImplantWafer" }, { - "@id": "bts:Inositol" + "@id": "bts:Carotuximab" }, { - "@id": "bts:InotuzumabOzogamicin" + "@id": "bts:Carubicin" }, { - "@id": "bts:Inproquone" + "@id": "bts:CarubicinHydrochloride" }, { - "@id": "bts:Integrinalpha-2InhibitorE7820" + "@id": "bts:Carzelesin" }, { - "@id": "bts:IntegrinReceptorAntagonistGLPG0187" + "@id": "bts:Carzinophilin" }, { - "@id": "bts:Interferon" + "@id": "bts:CathelicidinLL-37" }, { - "@id": "bts:InterferonAlfa-2B" + "@id": "bts:CationicLiposome-EncapsulatedPaclitaxel" }, { - "@id": "bts:InterferonAlfa-N1" + "@id": "bts:CationicPeptideCreamCypep-1" }, { - "@id": "bts:InterferonAlfa-N3" + "@id": "bts:Catumaxomab" }, { - "@id": "bts:InterferonAlfacon-1" + "@id": "bts:CBP/beta-cateninAntagonistPRI-724" }, { - "@id": "bts:InterferonBeta-1A" + "@id": "bts:CBP/beta-cateninModulatorE7386" }, { - "@id": "bts:InterferonGamma-1b" + "@id": "bts:CCR2AntagonistCCX872-B" }, { - "@id": "bts:Interferon-gamma-expressingAdenovirusVaccineASN-002" + "@id": "bts:CCR2AntagonistPF-04136309" }, { - "@id": "bts:InterleukinTherapy" + "@id": "bts:CCR2/CCR5AntagonistBMS-813160" }, { - "@id": "bts:Interleukin-12-FcFusionProteinDF6002" + "@id": "bts:CCR4InhibitorFLX475" }, { - "@id": "bts:Interleukin-15AgonistFusionProteinSHR1501" + "@id": "bts:CD11bAgonistGB1275" }, { - "@id": "bts:Interleukin-15FusionProteinBJ-001" + "@id": "bts:CD123-CD33CompoundCARTCells" }, { - "@id": "bts:Interleukin-15/Interleukin-15ReceptorAlphaComplex-FcFusionProteinXmAb24306" + "@id": "bts:CD123-specificTargetingModuleTM123" }, { - "@id": "bts:Interleukin-15/Interleukin-15ReceptorAlphaSushi+DomainFusionProteinSO-C101" + "@id": "bts:CD20-CD19CompoundCARTCells" }, { - "@id": "bts:Interleukin-2Liposome" + "@id": "bts:CD28/ICOSAntagonistALPN-101" }, { - "@id": "bts:Intermediate-affinityInterleukin-2ReceptorAgonistALKS4230" + "@id": "bts:CD4-specificTelomerasePeptideVaccineUCPVax" }, { - "@id": "bts:Intetumumab" + "@id": "bts:CD40AgonistMonoclonalAntibodyCP-870;893" }, { - "@id": "bts:Intiquinatine" + "@id": "bts:CD40AgonisticMonoclonalAntibodyAPX005M" }, { - "@id": "bts:Intoplicine" + "@id": "bts:CD44TargetedAgentSPL-108" }, { - "@id": "bts:Inulin" + "@id": "bts:CD44v6-specificCART-cells" }, { - "@id": "bts:IobenguaneI-131" + "@id": "bts:CD47AntagonistALX148" }, { - "@id": "bts:IodineI124MonoclonalAntibodyA33" + "@id": "bts:CD73InhibitorAB680" }, { - "@id": "bts:IodineI124MonoclonalAntibodyM5A" + "@id": "bts:CD73InhibitorLY3475070" }, { - "@id": "bts:IodineI125-Anti-EGFR-425MonoclonalAntibody" + "@id": "bts:CD80-FcFusionProteinALPN-202" }, { - "@id": "bts:IodineI131Anti-FibronectinAntibodyFragmentL19-SIP" + "@id": "bts:CD80-FcFusionProteinFPT155" }, { - "@id": "bts:IodineI131Apamistamab" + "@id": "bts:CDC7InhibitorTAK-931" }, { - "@id": "bts:IodineI131DerlotuximabBiotin" + "@id": "bts:CDC7KinaseInhibitorBMS-863233" }, { - "@id": "bts:IodineI131EthiodizedOil" + "@id": "bts:CDC7KinaseInhibitorLY3143921Hydrate" }, { - "@id": "bts:IodineI131IPA" + "@id": "bts:CDC7KinaseInhibitorNMS-1116354" }, { - "@id": "bts:IodineI131MIP-1095" + "@id": "bts:CDKInhibitorAT7519" }, { - "@id": "bts:IodineI131MonoclonalAntibody81C6" + "@id": "bts:CDKInhibitorR547" }, { - "@id": "bts:IodineI131MonoclonalAntibodyBC8" + "@id": "bts:CDKInhibitorSNS-032" }, { - "@id": "bts:IodineI131MonoclonalAntibodyCC49-deltaCH2" + "@id": "bts:CDK/JAK2/FLT3InhibitorTG02Citrate" }, { - "@id": "bts:IodineI131MonoclonalAntibodyF16SIP" + "@id": "bts:CDK1InhibitorBEY1107" }, { - "@id": "bts:IodineI131MonoclonalAntibodyG-250" + "@id": "bts:CDK1/2/4InhibitorAG-024322" }, { - "@id": "bts:IodineI131MonoclonalAntibodymuJ591" + "@id": "bts:CDK2InhibitorPF-07104091" }, { - "@id": "bts:IodineI131Omburtamab" + "@id": "bts:CDK2/4/6/FLT3InhibitorFN-1501" }, { - "@id": "bts:IodineI131Rituximab" + "@id": "bts:CDK2/5/9InhibitorCYC065" }, { - "@id": "bts:IodineI131Tenatumomab" + "@id": "bts:CDK4InhibitorP1446A-05" }, { - "@id": "bts:IodineI131TM-601" + "@id": "bts:CDK4/6Inhibitor" }, { - "@id": "bts:IodineI131Tositumomab" + "@id": "bts:CDK4/6InhibitorBPI-16350" }, { - "@id": "bts:IodineI-131" + "@id": "bts:CDK4/6InhibitorCS3002" }, { - "@id": "bts:IoflubenzamideI-131" + "@id": "bts:CDK4/6InhibitorFCN-437" }, { - "@id": "bts:Ionomycin" + "@id": "bts:CDK4/6InhibitorG1T38" }, { - "@id": "bts:Ipafricept" + "@id": "bts:CDK4/6InhibitorHS-10342" }, { - "@id": "bts:Ipatasertib" + "@id": "bts:CDK4/6InhibitorSHR6390" }, { - 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"@id": "bts:Irinotecan-ElutingBeads" + "@id": "bts:Cedefingol" }, { - "@id": "bts:Irinotecan/P-glycoproteinInhibitorHM30181AKCombinationTablet" + "@id": "bts:Cediranib" }, { - "@id": "bts:Irofulven" + "@id": "bts:CediranibMaleate" }, { - "@id": "bts:Iroplact" + "@id": "bts:Celecoxib" }, { - "@id": "bts:Irosustat" + "@id": "bts:CellCycleCheckpoint/DNARepairAntagonistIC83" }, { - "@id": "bts:IrradiatedAllogeneicHumanLungCancerCellsExpressingOX40L-IgVaccineHS-130" + "@id": "bts:Cemadotin" }, { - "@id": "bts:Isatuximab" + "@id": "bts:CemadotinHydrochloride" }, { - "@id": "bts:Iso-fludelone" + "@id": "bts:Cemiplimab" }, { - "@id": "bts:IsobruceinB" + "@id": "bts:Cenersen" }, { - "@id": "bts:IsocoumarinNM-3" + "@id": "bts:Cenisertib" }, { - "@id": "bts:Isotretinoin" + "@id": "bts:CENP-EInhibitorGSK-923295" }, { - "@id": "bts:Ispinesib" + "@id": "bts:Ceralasertib" }, { - "@id": "bts:IspinesibMesylate" + "@id": "bts:CeramideNanoliposome" }, { - "@id": "bts:ISS1018CpGOligodeoxynucleotide" + "@id": "bts:Cerdulatinib" }, { - "@id": "bts:Istiratumab" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-92480" }, { - "@id": "bts:Itacitinib" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-99282" }, { - "@id": "bts:ItacitinibAdipate" + "@id": "bts:CereblonModulatorCC-90009" }, { - "@id": "bts:ITKInhibitorCPI-818" + "@id": "bts:CergutuzumabAmunaleukin" }, { - "@id": "bts:Itraconazole" + "@id": "bts:Ceritinib" }, { - "@id": "bts:ItraconazoleDispersionInPolymerMatrix" + "@id": "bts:Cesalin" }, { - "@id": "bts:Ivaltinostat" + "@id": "bts:CEtKRASAntisenseOligonucleotideAZD4785" }, { - "@id": "bts:Ivosidenib" + "@id": "bts:Cetrelimab" }, { - "@id": "bts:Ivuxolimab" + "@id": "bts:Cetuximab" }, { - "@id": "bts:Ixabepilone" + "@id": "bts:CetuximabSarotalocan" }, { - "@id": "bts:Ixazomib" + "@id": "bts:Cetuximab-IR700ConjugateRM-1929" }, { - "@id": "bts:IxazomibCitrate" + "@id": "bts:Cetuximab-loadedEthylcellulosePolymericNanoparticlesDecoratedwithOctreotide(SY)" }, { - "@id": "bts:JAKInhibitor" + "@id": "bts:Cevipabulin" }, { - 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"@id": "bts:KRASG12CInhibitorLY3499446" + "@id": "bts:Chk1InhibitorGDC-0575" }, { - "@id": "bts:KRASG12CInhibitorMRTX849" + "@id": "bts:CHK1InhibitorMK-8776" }, { - "@id": "bts:KRASMutant-targetingAMG510" + "@id": "bts:CHK1InhibitorPF-477736" }, { - "@id": "bts:KRAS-MAPKSignalingPathwayInhibitorJAB-3312" + "@id": "bts:Chlorambucil" }, { - "@id": "bts:KRASG12CInhibitorJNJ-74699157" + "@id": "bts:Chlorodihydropyrimidine" }, { - "@id": "bts:KRN5500" + "@id": "bts:Chloroquine" }, { - "@id": "bts:KSPInhibitorAZD4877" + "@id": "bts:ChloroquinoxalineSulfonamide" }, { - "@id": "bts:KSPInhibitorSB-743921" + "@id": "bts:Chlorotoxin" }, { - "@id": "bts:KunecatechinsOintment" + "@id": "bts:Chlorotoxin(EQ)-CD28-CD3zeta-CD19t-expressingCART-lymphocytes" }, { - "@id": "bts:L-Gossypol" + "@id": "bts:Chlorozotocin" }, { - "@id": "bts:L-methylfolate" + "@id": "bts:CholineKinaseAlphaInhibitorTCD-717" }, { - "@id": "bts:LabetuzumabGovitecan" + "@id": "bts:CHP-NY-ESO-1PeptideVaccineIMF-001" }, { - "@id": "bts:Lactoferrin-derivedLyticPeptideLTX-315" + "@id": "bts:ChromomycinA3" }, { - 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"@id": "bts:Laromustine" + "@id": "bts:CintredekinBesudotox" }, { - "@id": "bts:Larotaxel" + "@id": "bts:Cirmtuzumab" }, { - "@id": "bts:LarotinibMesylate" + "@id": "bts:Cis-UrocanicAcid" }, { - "@id": "bts:Larotrectinib" + "@id": "bts:Cisplatin" }, { - "@id": "bts:LarotrectinibSulfate" + "@id": "bts:CisplatinLiposomal" }, { - "@id": "bts:LavendustinA" + "@id": "bts:Cisplatin-ETherapeuticImplant" }, { - "@id": "bts:Lazertinib" + "@id": "bts:Cisplatin/Vinblastine/CellPenetrationEnhancerFormulationINT230-6" }, { - "@id": "bts:LeadPb212TCMC-trastuzumab" + "@id": "bts:Citarinostat" }, { - "@id": "bts:Lefitolimod" + "@id": "bts:CitatuzumabBogatox" }, { - "@id": "bts:Leflunomide" + "@id": "bts:Cixutumumab" }, { - "@id": "bts:Lenalidomide" + "@id": "bts:CK1alpha/CDK7/CDK9InhibitorBTX-A51" }, { - "@id": "bts:LenalidomideAnalogKPG-121" + "@id": "bts:CK2-targetingSyntheticPeptideCIGB-300" }, { - "@id": "bts:Lentinan" + "@id": "bts:CL246738" }, { - "@id": "bts:Lenvatinib" + "@id": "bts:Cladribine" }, { - 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"@id": "bts:Pirfenidone" + "@id": "bts:Interferon-gamma-expressingAdenovirusVaccineASN-002" }, { - "@id": "bts:Piritrexim" + "@id": "bts:InterleukinTherapy" }, { - "@id": "bts:PiritreximIsethionate" + "@id": "bts:Interleukin-12-FcFusionProteinDF6002" }, { - "@id": "bts:Pirotinib" + "@id": "bts:Interleukin-15AgonistFusionProteinSHR1501" }, { - "@id": "bts:Piroxantrone" + "@id": "bts:Interleukin-15FusionProteinBJ-001" }, { - "@id": "bts:PiroxantroneHydrochloride" + "@id": "bts:Interleukin-15/Interleukin-15ReceptorAlphaComplex-FcFusionProteinXmAb24306" }, { - "@id": "bts:Pixantrone" + "@id": "bts:Interleukin-15/Interleukin-15ReceptorAlphaSushi+DomainFusionProteinSO-C101" }, { - "@id": "bts:PixantroneDimaleate" + "@id": "bts:Interleukin-2Liposome" }, { - "@id": "bts:Pixatimod" + "@id": "bts:Intermediate-affinityInterleukin-2ReceptorAgonistALKS4230" }, { - "@id": "bts:PKARegulatorySubunitRIalphaMixed-BackboneAntisenseOligonucleotideGEM231" + "@id": "bts:Intetumumab" }, { - "@id": "bts:PKC-alphaAntisenseOligodeoxynucleotideISIS3521" + "@id": "bts:Intiquinatine" }, { - "@id": "bts:PKC-betaInhibitorMS-553" + "@id": "bts:Intoplicine" }, { - "@id": "bts:Placebo" + "@id": "bts:Inulin" }, { - "@id": "bts:PladienolideDerivativeE7107" + "@id": "bts:IobenguaneI-131" }, { - "@id": "bts:Plamotamab" + "@id": "bts:IodineI124MonoclonalAntibodyA33" }, { - "@id": "bts:PlasmidDNAVaccinepING-hHER3FL" + "@id": "bts:IodineI124MonoclonalAntibodyM5A" }, { - "@id": "bts:Platinum" + "@id": "bts:IodineI125-Anti-EGFR-425MonoclonalAntibody" }, { - "@id": "bts:PlatinumAcetylacetonate-TitaniumDioxideNanoparticles" + "@id": "bts:IodineI131Anti-FibronectinAntibodyFragmentL19-SIP" }, { - "@id": "bts:PlatinumCompound" + "@id": "bts:IodineI131Apamistamab" }, { - "@id": "bts:Plevitrexed" + "@id": "bts:IodineI131DerlotuximabBiotin" }, { - "@id": "bts:Plicamycin" + "@id": "bts:IodineI131EthiodizedOil" }, { - "@id": "bts:Plinabulin" + "@id": "bts:IodineI131IPA" }, { - "@id": "bts:Plitidepsin" + "@id": "bts:IodineI131MIP-1095" }, { - "@id": "bts:Plk1InhibitorBI2536" + "@id": "bts:IodineI131MonoclonalAntibody81C6" }, { - "@id": "bts:PLK1InhibitorCYC140" + "@id": "bts:IodineI131MonoclonalAntibodyBC8" }, { - "@id": "bts:PLK1InhibitorTAK-960" + "@id": "bts:IodineI131MonoclonalAntibodyCC49-deltaCH2" }, { - "@id": "bts:Plocabulin" + "@id": "bts:IodineI131MonoclonalAntibodyF16SIP" }, { - "@id": "bts:Plozalizumab" + "@id": "bts:IodineI131MonoclonalAntibodyG-250" }, { - "@id": "bts:PNGVL4a-CRT-E6E7L2DNAVaccine" + "@id": "bts:IodineI131MonoclonalAntibodymuJ591" }, { - "@id": "bts:PNGVL4a-Sig/E7(detox)/HSP70DNAandHPV16L2/E6/E7FusionProteinTA-CINVaccinePVX-2" + "@id": "bts:IodineI131Omburtamab" }, { - "@id": "bts:PolIInhibitorCX5461" + "@id": "bts:IodineI131Rituximab" }, { - "@id": "bts:PolatuzumabVedotin" + "@id": "bts:IodineI131Tenatumomab" }, { - "@id": "bts:Polidocanol" + "@id": "bts:IodineI131TM-601" }, { - "@id": "bts:Poliglusam" + "@id": "bts:IodineI131Tositumomab" }, { - "@id": "bts:Polo-likeKinase1InhibitorGSK461364" + "@id": "bts:IodineI-131" }, { - "@id": "bts:Polo-likeKinase1InhibitorMK1496" + "@id": "bts:IoflubenzamideI-131" }, { - 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"@id": "bts:Polymer-conjugatedIL-15ReceptorAgonistNKTR-255" + "@id": "bts:IridiumIr192" }, { - "@id": "bts:Polymer-encapsulatedLuteolinNanoparticle" + "@id": "bts:Irinotecan" }, { - "@id": "bts:PolymericCamptothecinProdrugXMT-1001" + "@id": "bts:IrinotecanHydrochloride" }, { - "@id": "bts:PolypodiumleucotomosExtract" + "@id": "bts:IrinotecanSucrosofate" }, { - "@id": "bts:Polysaccharide-K" + "@id": "bts:Irinotecan-ElutingBeads" }, { - "@id": "bts:PolysialicAcid" + "@id": "bts:Irinotecan/P-glycoproteinInhibitorHM30181AKCombinationTablet" }, { - "@id": "bts:PolyunsaturatedFattyAcid" + "@id": "bts:Irofulven" }, { - "@id": "bts:PolyvalentMelanomaVaccine" + "@id": "bts:Iroplact" }, { - "@id": "bts:Pomalidomide" + "@id": "bts:Irosustat" }, { - "@id": "bts:PomegranateJuice" + "@id": "bts:IrradiatedAllogeneicHumanLungCancerCellsExpressingOX40L-IgVaccineHS-130" }, { - "@id": "bts:PomegranateLiquidExtract" + "@id": "bts:Isatuximab" }, { - "@id": "bts:Ponatinib" + "@id": "bts:Iso-fludelone" }, { - 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"@id": "bts:Quizartinib" + "@id": "bts:Leucovorin" }, { - "@id": "bts:R-(-)-GossypolAceticAcid" + "@id": "bts:LeucovorinCalcium" }, { - "@id": "bts:Rabusertib" + "@id": "bts:Leuprolide" }, { - "@id": "bts:Racemetyrosine/Methoxsalen/Phenytoin/SirolimusSM-88" + "@id": "bts:LeuprolideAcetate" }, { - "@id": "bts:Racotumomab" + "@id": "bts:LeuprolideMesylateInjectableSuspension" }, { - "@id": "bts:RAD51InhibitorCYT-0851" + "@id": "bts:Leurubicin" }, { - "@id": "bts:Radgocitabine" + "@id": "bts:Levetiracetam" }, { - "@id": "bts:RadgocitabineHydrochloride" + "@id": "bts:LevoleucovorinCalcium" }, { - "@id": "bts:RadioactiveIodine" + "@id": "bts:Levothyroxine" }, { - "@id": "bts:RadiolabeledCC49" + "@id": "bts:LevothyroxineSodium" }, { - "@id": "bts:RadiumRa223Dichloride" + "@id": "bts:Lexatumumab" }, { - "@id": "bts:RadiumRa224-labeledCalciumCarbonateMicroparticles" + "@id": "bts:Lexibulin" }, { - "@id": "bts:RadixAngelicaeSinensis/RadixAstragaliHerbalSupplement" + "@id": "bts:Liarozole" }, { - "@id": "bts:RadotinibHydrochloride" + "@id": "bts:LiarozoleFumarate" }, { - "@id": "bts:RafKinaseInhibitorHM95573" + "@id": "bts:LiarozoleHydrochloride" }, { - "@id": "bts:RAFKinaseInhibitorL-779450" + "@id": "bts:Licartin" }, { - "@id": "bts:RAFKinaseInhibitorXL281" + "@id": "bts:Licorice" }, { - "@id": "bts:Ragifilimab" + "@id": "bts:LifastuzumabVedotin" }, { - "@id": "bts:RalanitenAcetate" + "@id": "bts:Lifileucel" }, { - "@id": "bts:RalimetinibMesylate" + "@id": "bts:Lifirafenib" }, { - "@id": "bts:Raloxifene" + "@id": "bts:Light-activatedAU-011" }, { - "@id": "bts:RaloxifeneHydrochloride" + "@id": "bts:Light-EmittingOncolyticVacciniaVirusGL-ONC1" }, { - "@id": "bts:Raltitrexed" + "@id": "bts:Lilotomab" }, { - "@id": "bts:Ramucirumab" + "@id": "bts:Limonene;(+)-" }, { - "@id": "bts:Ranibizumab" + "@id": "bts:Limonene;(+/-)-" }, { - "@id": "bts:Ranimustine" + "@id": "bts:Linifanib" }, { - "@id": "bts:Ranolazine" + "@id": "bts:LinoleylCarbonate-Paclitaxel" }, { - "@id": "bts:Ranpirnase" + "@id": "bts:Linperlisib" }, { - 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"@id": "bts:RecombinantInterleukin-12" + "@id": "bts:LiverXReceptorbetaAgonistRGX-104" }, { - "@id": "bts:RecombinantInterleukin-13" + "@id": "bts:Lm-tLLO-neoantigensVaccineADXS-NEO" }, { - "@id": "bts:RecombinantInterleukin-18" + "@id": "bts:LMB-1Immunotoxin" }, { - "@id": "bts:RecombinantInterleukin-2" + "@id": "bts:LMB-2Immunotoxin" }, { - "@id": "bts:RecombinantInterleukin-6" + "@id": "bts:LMB-7Immunotoxin" }, { - "@id": "bts:RecombinantKSAGlycoproteinCO17-1A" + "@id": "bts:LMB-9Immunotoxin" }, { - "@id": "bts:RecombinantLeukocyteInterleukin" + "@id": "bts:LmddA-LLO-chHER2FusionProtein-secretingLive-attenuatedListeriaCancerVaccineADXS31-164" }, { - "@id": "bts:RecombinantLeukoregulin" + "@id": "bts:LMP-2:340-349PeptideVaccine" }, { - "@id": "bts:RecombinantLuteinizingHormone" + "@id": "bts:LMP-2:419-427PeptideVaccine" }, { - "@id": "bts:RecombinantMacrophageColony-StimulatingFactor" + "@id": "bts:LMP2-specificTCellReceptor-transducedAutologousT-lymphocytes" }, { - "@id": "bts:RecombinantMAGE-3.1Antigen" + "@id": "bts:LMP7InhibitorM3258" }, { - 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"@id": "bts:VinblastineSulfate" + "@id": "bts:Peptichemio" }, { - "@id": "bts:Vincristine" + "@id": "bts:Peptide946MelanomaVaccine" }, { - "@id": "bts:VincristineLiposomal" + "@id": "bts:Peptide946-TetanusPeptideConjugateMelanomaVaccine" }, { - "@id": "bts:VincristineSulfate" + "@id": "bts:Peretinoin" }, { - "@id": "bts:VincristineSulfateLiposome" + "@id": "bts:PerflenapentEmulsion" }, { - "@id": "bts:Vindesine" + "@id": "bts:Perfosfamide" }, { - "@id": "bts:Vinepidine" + "@id": "bts:Perifosine" }, { - "@id": "bts:Vinflunine" + "@id": "bts:PerillylAlcohol" }, { - "@id": "bts:VinflunineDitartrate" + "@id": "bts:PersonalizedALL-specificMulti-HLA-bindingPeptideVaccine" }, { - "@id": "bts:Vinfosiltine" + "@id": "bts:PersonalizedandAdjustedNeoantigenPeptideVaccinePANDA-VAC" }, { - "@id": "bts:Vinorelbine" + "@id": "bts:PersonalizedCancerVaccineRO7198457" }, { - "@id": "bts:VinorelbineTartrate" + "@id": "bts:PersonalizedNeoantigenDNAVaccineGNOS-PV01" }, { - "@id": "bts:VinorelbineTartrateEmulsion" + "@id": "bts:PersonalizedNeoantigenDNAVaccineGNOS-PVO2" }, { - 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"@id": "bts:Y90MonoclonalAntibodyHMFG1" + "@id": "bts:PI3K/mTORKinaseInhibitorPF-04691502" }, { - "@id": "bts:Y90MonoclonalAntibodyLym-1" + "@id": "bts:PI3K/mTORKinaseInhibitorVS-5584" }, { - "@id": "bts:Y90MonoclonalAntibodym170" + "@id": "bts:PI3K/mTORKinaseInhibitorWXFL10030390" }, { - "@id": "bts:Y90MonoclonalAntibodyM195" + "@id": "bts:PI3K/mTOR/ALK-1/DNA-PKInhibitorP7170" }, { - "@id": "bts:YangYinFuZheng" + "@id": "bts:PI3K/mTORC1/mTORC2InhibitorDCBCI0901" }, { - "@id": "bts:YangzhengXiaojiExtract" + "@id": "bts:PI3Ka/mTORInhibitorPKI-179" }, { - "@id": "bts:Yiqi-yangyin-jieduHerbalDecoction" + "@id": "bts:PI3KalphaInhibitorAZD8835" }, { - "@id": "bts:YttriumY90Anti-CD19MonoclonalAntibodyBU12" + "@id": "bts:PI3KbetaInhibitorAZD8186" }, { - "@id": "bts:YttriumY90Anti-CD45MonoclonalAntibodyAHN-12" + "@id": "bts:PI3KdeltaInhibitorGS-9901" }, { - "@id": "bts:YttriumY90Anti-CD45MonoclonalAntibodyBC8" + "@id": "bts:Pibenzimol" }, { - "@id": "bts:YttriumY90Anti-CDH3MonoclonalAntibodyFF-21101" + "@id": "bts:Pibrozelesin" }, { - 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"rdfs:subClassOf": [ + "@id": "bts:Plicamycin" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Model Days to Treatment", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ModelTreatmentResponse", - "@type": "rdfs:Class", - "rdfs:comment": "Text term that describes the model's response after the treatment was administered.", - "rdfs:label": "ModelTreatmentResponse", - "rdfs:subClassOf": [ + "@id": "bts:Plinabulin" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Plitidepsin" + }, { - "@id": "bts:CompleteResponse" + "@id": "bts:Plk1InhibitorBI2536" }, { - "@id": "bts:NoEvidenceofDisease" + "@id": "bts:PLK1InhibitorCYC140" }, { - "@id": "bts:NoResponse" + "@id": "bts:PLK1InhibitorTAK-960" }, { - "@id": "bts:NotApplicable" + "@id": "bts:Plocabulin" }, { - "@id": "bts:NotEvaluable" + "@id": "bts:Plozalizumab" }, { - "@id": "bts:NotReported" + "@id": "bts:PNGVL4a-CRT-E6E7L2DNAVaccine" }, { - "@id": "bts:PartialResponse" + "@id": "bts:PNGVL4a-Sig/E7(detox)/HSP70DNAandHPV16L2/E6/E7FusionProteinTA-CINVaccinePVX-2" }, { - "@id": "bts:PersistentDisease" + "@id": "bts:PolIInhibitorCX5461" }, { - "@id": "bts:ProgressiveDisease" + "@id": "bts:PolatuzumabVedotin" }, { - "@id": "bts:StableDisease" + "@id": "bts:Polidocanol" }, { - "@id": "bts:Unknown" - } - ], - "sms:displayName": "Model Treatment Response", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Name", - "@type": "rdfs:Class", - "rdfs:comment": "Name of the individual", - "rdfs:label": "Name", - "rdfs:subClassOf": [ + "@id": "bts:Poliglusam" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Name", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:AlternativeNames", - "@type": "rdfs:Class", - "rdfs:comment": "Other ways the individual's name is displayed. Multiple values permitted, comma separated.", - "rdfs:label": "AlternativeNames", - "rdfs:subClassOf": [ + "@id": "bts:Polo-likeKinase1InhibitorGSK461364" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Alternative Names", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:Email", - "@type": "rdfs:Class", - "rdfs:comment": "Email address of the individual", - "rdfs:label": "Email", - "rdfs:subClassOf": [ + "@id": "bts:Polo-likeKinase1InhibitorMK1496" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Email", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Url", - "@type": "rdfs:Class", - "rdfs:comment": "URL, e.g., individual's home page address", - "rdfs:label": "Url", - "rdfs:subClassOf": [ + "@id": "bts:Polo-likeKinase1InhibitorNMS-1286937" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Url", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:OrcidId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique identifier (ORCID ID) of the individual", - "rdfs:label": "OrcidId", - "rdfs:subClassOf": [ + "@id": "bts:Polo-likeKinase4InhibitorCFI-400945Fumarate" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Orcid Id", - "sms:required": "sms:false", - "sms:validationRules": [ - "regex search \\d{4}\\-\\d{4}\\-\\d{4}\\-\\d{3}(\\d|X)" - ] - }, - { - "@id": "bts:SynapseProfileId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page.", - "rdfs:label": "SynapseProfileId", - "rdfs:subClassOf": [ + "@id": "bts:Poly-alendronateDextran-GuanidineConjugate" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse Profile Id", - "sms:required": "sms:false", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:LastKnownInstitution", - "@type": "rdfs:Class", - "rdfs:comment": "Last known institutional affiliation of the individual.", - "rdfs:label": "LastKnownInstitution", - "rdfs:subClassOf": [ + "@id": "bts:Poly-gammaGlutamicAcid" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Last Known Institution", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkingGroupParticipation", - "@type": "rdfs:Class", - "rdfs:comment": "CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.", - "rdfs:label": "WorkingGroupParticipation", - "rdfs:subClassOf": [ + "@id": "bts:PolyamineAnalogSL11093" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:PolyamineAnaloguePG11047" + }, { - "@id": "bts:CancerMetabolism" + "@id": "bts:PolyamineAnalogueSBP-101" }, { - "@id": "bts:CellandTissueMechanics" + "@id": "bts:PolyamineTransportInhibitorAMXT-1501Dicaprate" }, { - "@id": "bts:EducationandOutreach" + "@id": "bts:Polyandrol" }, { - "@id": "bts:ImageAnalysis" + "@id": "bts:PolyethyleneGlycolRecombinantEndostatin" }, { - "@id": "bts:NavigatingCancerwithScienceandArt" + "@id": "bts:Polyethyleneglycol-7-ethyl-10-hydroxycamptothecinDFP-13318" }, { - "@id": "bts:None" + "@id": "bts:Polymer-conjugatedIL-15ReceptorAgonistNKTR-255" }, { - "@id": "bts:PatientAdvocacyWorkingGroup" + "@id": "bts:Polymer-encapsulatedLuteolinNanoparticle" }, { - "@id": "bts:Protein-ProteinInteractions" + "@id": "bts:PolymericCamptothecinProdrugXMT-1001" }, { - "@id": "bts:ResourceandDataSharing" - } - ], - "sms:displayName": "Working Group Participation", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:CancerMetabolism", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CancerMetabolism", - "rdfs:subClassOf": [ + "@id": "bts:PolypodiumleucotomosExtract" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Cancer Metabolism", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CellandTissueMechanics", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CellandTissueMechanics", - "rdfs:subClassOf": [ + "@id": "bts:Polysaccharide-K" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Cell and Tissue Mechanics", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:EducationandOutreach", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "EducationandOutreach", - "rdfs:subClassOf": [ + "@id": "bts:PolysialicAcid" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Education and Outreach", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageAnalysis", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ImageAnalysis", - "rdfs:subClassOf": [ + "@id": "bts:PolyunsaturatedFattyAcid" + }, { - "@id": "bts:WorkingGroupParticipation" + "@id": "bts:PolyvalentMelanomaVaccine" }, { - "@id": "bts:ToolOperation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Analysis", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NavigatingCancerwithScienceandArt", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NavigatingCancerwithScienceandArt", - "rdfs:subClassOf": [ + "@id": "bts:Pomalidomide" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Navigating Cancer with Science and Art", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PatientAdvocacyWorkingGroup", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PatientAdvocacyWorkingGroup", - "rdfs:subClassOf": [ + "@id": "bts:PomegranateJuice" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Patient Advocacy Working Group", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Protein-ProteinInteractions", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Protein-ProteinInteractions", - "rdfs:subClassOf": [ + "@id": "bts:PomegranateLiquidExtract" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Protein-Protein Interactions", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ResourceandDataSharing", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ResourceandDataSharing", - "rdfs:subClassOf": [ + "@id": "bts:Ponatinib" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Resource and Data Sharing", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ChairRoles", - "@type": "rdfs:Class", - "rdfs:comment": "Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.", - "rdfs:label": "ChairRoles", - "rdfs:subClassOf": [ + "@id": "bts:PonatinibHydrochloride" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:PorcupineInhibitorCGX1321" + }, { - "@id": "bts:AnnualMeeting" + "@id": "bts:PorcupineInhibitorETC-1922159" }, { - "@id": "bts:None" + "@id": "bts:PorcupineInhibitorRXC004" }, { - "@id": "bts:SteeringCommittee" + "@id": "bts:PorcupineInhibitorWNT974" }, { - "@id": "bts:WorkingGroup" - } - ], - "sms:displayName": "Chair Roles", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:AnnualMeeting", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AnnualMeeting", - "rdfs:subClassOf": [ + "@id": "bts:PorcupineInhibitorXNW7201" + }, { - "@id": "bts:ChairRoles" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Annual Meeting", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SteeringCommittee", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SteeringCommittee", - "rdfs:subClassOf": [ + "@id": "bts:PorfimerSodium" + }, { - "@id": "bts:ChairRoles" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Steering Committee", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkingGroup", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "WorkingGroup", - "rdfs:subClassOf": [ + "@id": "bts:Porfiromycin" + }, { - "@id": "bts:ChairRoles" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Working Group", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConsentForPortalDisplay", - "@type": "rdfs:Class", - "rdfs:comment": "Consent from individual to display Person information in the CCKP", - "rdfs:label": "ConsentForPortalDisplay", - "rdfs:subClassOf": [ + "@id": "bts:Poziotinib" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:PPARAlphaAntagonistTPST-1120" + }, { - "@id": "bts:No" + "@id": "bts:PR1LeukemiaPeptideVaccine" }, { - "@id": "bts:Yes" - } - ], - "sms:displayName": "Consent For Portal Display", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:PortalDisplay", - "@type": "rdfs:Class", - "rdfs:comment": "Display content in CCKP", - "rdfs:label": "PortalDisplay", - "rdfs:subClassOf": [ + "@id": "bts:Pracinostat" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Pralatrexate" + }, { - "@id": "bts:FALSE" + "@id": "bts:Pralsetinib" }, { - "@id": "bts:TRUE" - } - ], - "sms:displayName": "Portal Display", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:FALSE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "FALSE", - "rdfs:subClassOf": [ + "@id": "bts:PraluzatamabRavtansine" + }, { - "@id": "bts:PortalDisplay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "FALSE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TRUE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TRUE", - "rdfs:subClassOf": [ + "@id": "bts:PRAME-targetingT-cellReceptor/InducibleCaspase9BPX-701" + }, { - "@id": "bts:PortalDisplay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TRUE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PersonView", - "@type": "rdfs:Class", - "rdfs:comment": "The denormalized manifest for person submission.", - "rdfs:label": "PersonView", - "rdfs:subClassOf": [ + "@id": "bts:PravastatinSodium" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person View", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:Prednimustine" + }, { - "@id": "bts:GrantView" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Prednisolone" + }, { - "@id": "bts:Component" + "@id": "bts:PrednisoloneAcetate" }, { - "@id": "bts:PersonViewId" + "@id": "bts:PrednisoloneSodiumPhosphate" }, { - "@id": "bts:GrantViewKey" + "@id": "bts:Prednisone" }, { - "@id": "bts:PersonConsortiumName" + "@id": "bts:Prexasertib" }, { - "@id": "bts:Name" + "@id": "bts:Prexigebersen" }, { - "@id": "bts:AlternativeNames" + "@id": "bts:PRIMA-1AnalogAPR-246" }, { - "@id": "bts:Email" + "@id": "bts:PrimeCancerVaccineMVA-BN-CV301" }, { - "@id": "bts:Url" + "@id": "bts:Prinomastat" }, { - "@id": "bts:OrcidId" + "@id": "bts:PRMT1InhibitorGSK3368715" }, { - "@id": "bts:SynapseProfileId" + "@id": "bts:PRMT5InhibitorJNJ-64619178" }, { - "@id": "bts:LastKnownInstitution" + "@id": "bts:PRMT5InhibitorPRT811" }, { - 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"sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:PersonConsortiumName", - "@type": "rdfs:Class", - "rdfs:comment": "Consortium(s) associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonConsortiumName", - "rdfs:subClassOf": [ + "@id": "bts:ProstaglandinE2EP4ReceptorInhibitorE7046" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:ProstateCancerVaccineONY-P1" + }, { - "@id": "bts:CCBIR" + "@id": "bts:ProstateHealthCocktailDietarySupplement" }, { - "@id": "bts:CSBC" + "@id": "bts:ProstaticAcidPhosphatase-SargramostimFusionProteinPA2024" }, { - "@id": "bts:HTAN" + "@id": "bts:Protease-activatedAnti-PD-L1AntibodyProdrugCX-072" }, { - "@id": "bts:ICBP" + "@id": "bts:ProteinArginineMethyltransferase5InhibitorGSK3326595" }, { - "@id": "bts:MetNet" + "@id": "bts:ProteinArginineMethyltransferase5InhibitorPF-06939999" }, { - "@id": "bts:NCI" + "@id": "bts:ProteinArginineMethyltransferase5InhibitorPRT543" }, { - "@id": "bts:NCIClinicalandTranslationalExploratory/DevelopmentalStudies" + "@id": "bts:ProteinKinaseCInhibitorIDE196" }, { - "@id": "bts:PDMC" + "@id": "bts:ProteinPhosphatase2AInhibitorLB-100" }, { - "@id": "bts:PS-ON" + "@id": "bts:ProteinStabilizedLiposomalDocetaxelNanoparticles" }, { - "@id": "bts:SageBionetworks" + "@id": "bts:ProteinTyrosineKinase2InhibitorIN10018" }, { - "@id": "bts:TEC" - } - ], - "sms:displayName": "Person Consortium Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonPublications", - "@type": "rdfs:Class", - "rdfs:comment": "A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonPublications", - "rdfs:subClassOf": [ + "@id": "bts:Proxalutamide" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Publications", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonDatasets", - "@type": "rdfs:Class", - "rdfs:comment": "A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonDatasets", - "rdfs:subClassOf": [ + "@id": "bts:PSA/IL-2/GM-CSFVaccine" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Datasets", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonTools", - "@type": "rdfs:Class", - "rdfs:comment": "A list of the tool names associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonTools", - "rdfs:subClassOf": [ + "@id": "bts:PSA/PSMADNAPlasmidINO-5150" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Tools", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonEducationalResources", - "@type": "rdfs:Class", - "rdfs:comment": "A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonEducationalResources", - "rdfs:subClassOf": [ + "@id": "bts:Pseudoisocytidine" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Educational Resources", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonGrantNumber", - "@type": "rdfs:Class", - "rdfs:comment": "Grant number(s) associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonGrantNumber", - "rdfs:subClassOf": [ + "@id": "bts:PSMA-targetedDocetaxelNanoparticlesBIND-014" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:PSMA-targetedTubulysinB-containingConjugateEC1169" + }, { - "@id": "bts:Affiliated/Non-GrantAssociated" + "@id": "bts:PSMA/CD3Tri-specificT-cellActivatingConstructHPN424" }, { - "@id": "bts:CA184897" + "@id": "bts:PTEF-b/CDK9InhibitorBAY1251152" }, { - "@id": "bts:CA184898" + "@id": "bts:Pterostilbene" }, { - "@id": "bts:CA188388" + "@id": "bts:Pumitepa" }, { - "@id": "bts:CA193313" + "@id": "bts:Puquitinib" }, { - "@id": "bts:CA193417" + "@id": "bts:PuquitinibMesylate" }, { - "@id": "bts:CA193419" + "@id": "bts:Puromycin" }, { - "@id": "bts:CA193461" + "@id": "bts:PuromycinHydrochloride" }, { - "@id": "bts:CA193489" + "@id": "bts:PV-10" }, { - "@id": "bts:CA195469" + "@id": "bts:PVAMicroporousHydrospheres/DoxorubicinHydrochloride" }, { - 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"@id": "bts:Mesenchyme" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Model Days to Treatment", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ModelTreatmentResponse", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the model's response after the treatment was administered.", + "rdfs:label": "ModelTreatmentResponse", + "rdfs:subClassOf": [ { - "@id": "bts:Mucosa" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Muscle" + "@id": "bts:CompleteResponse" }, { - "@id": "bts:NasalCavity" + "@id": "bts:NoEvidenceofDisease" }, { - "@id": "bts:NervousSystem" + "@id": "bts:NoResponse" }, { "@id": "bts:NotApplicable" }, { - "@id": "bts:OlfactoryMucosa" + "@id": "bts:NotEvaluable" }, { - "@id": "bts:Omentum" + "@id": "bts:NotReported" }, { - "@id": "bts:OralCavity" + "@id": "bts:PartialResponse" }, { - "@id": "bts:OralMucosa" + "@id": "bts:PersistentDisease" }, { - "@id": "bts:Ovary" + "@id": "bts:ProgressiveDisease" }, { - "@id": "bts:Pancreas" + "@id": "bts:StableDisease" }, { - "@id": "bts:PelvicLymphNodes" - }, + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Model Treatment Response", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Name", + "@type": "rdfs:Class", + "rdfs:comment": "Name of the individual", + "rdfs:label": "Name", + "rdfs:subClassOf": [ { - "@id": "bts:PendingAnnotation" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Name", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:AlternativeNames", + "@type": "rdfs:Class", + "rdfs:comment": "Other ways the individual's name is displayed. Multiple values permitted, comma separated.", + "rdfs:label": "AlternativeNames", + "rdfs:subClassOf": [ { - "@id": "bts:PeriodontalLigament" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alternative Names", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Email", + "@type": "rdfs:Class", + "rdfs:comment": "Email address of the individual", + "rdfs:label": "Email", + "rdfs:subClassOf": [ { - "@id": "bts:PeripheralNerves" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Email", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Url", + "@type": "rdfs:Class", + "rdfs:comment": "URL, e.g., individual's home page address", + "rdfs:label": "Url", + "rdfs:subClassOf": [ { - "@id": "bts:Peritoneum" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Url", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:OrcidId", + "@type": "rdfs:Class", + "rdfs:comment": "Unique identifier (ORCID ID) of the individual", + "rdfs:label": "OrcidId", + "rdfs:subClassOf": [ { - "@id": "bts:Pharynx" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Orcid Id", + "sms:required": "sms:false", + "sms:validationRules": [ + "regex search \\d{4}\\-\\d{4}\\-\\d{4}\\-\\d{3}(\\d|X)" + ] + }, + { + "@id": "bts:SynapseProfileId", + "@type": "rdfs:Class", + "rdfs:comment": "Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page.", + "rdfs:label": "SynapseProfileId", + "rdfs:subClassOf": [ { - "@id": "bts:PituitaryGland" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Synapse Profile Id", + "sms:required": "sms:false", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:LastKnownInstitution", + "@type": "rdfs:Class", + "rdfs:comment": "Last known institutional affiliation of the individual.", + "rdfs:label": "LastKnownInstitution", + "rdfs:subClassOf": [ { - "@id": "bts:Placenta" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Last Known Institution", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:WorkingGroupParticipation", + "@type": "rdfs:Class", + "rdfs:comment": "CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.", + "rdfs:label": "WorkingGroupParticipation", + "rdfs:subClassOf": [ { - "@id": "bts:Pleura" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:ProstateGland" + "@id": "bts:CancerMetabolism" }, { - "@id": "bts:Rectum" + "@id": "bts:CellandTissueMechanics" }, { - "@id": "bts:ReproductiveSystem" + "@id": "bts:EducationandOutreach" }, { - "@id": "bts:RespiratorySystem" + "@id": "bts:ImageAnalysis" }, { - "@id": "bts:SalivaryGland" + "@id": "bts:NavigatingCancerwithScienceandArt" }, { - "@id": "bts:Sclera" + "@id": "bts:None" }, { - "@id": "bts:SinonasalTract" + "@id": "bts:PatientAdvocacyWorkingGroup" }, { - "@id": "bts:Skin" + "@id": "bts:Protein-ProteinInteractions" }, { - "@id": "bts:SmallIntestine" - }, + "@id": "bts:ResourceandDataSharing" + } + ], + "sms:displayName": "Working Group Participation", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:CancerMetabolism", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CancerMetabolism", + "rdfs:subClassOf": [ { - "@id": "bts:SpinalCord" - }, + "@id": "bts:WorkingGroupParticipation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cancer Metabolism", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CellandTissueMechanics", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CellandTissueMechanics", + "rdfs:subClassOf": [ { - "@id": "bts:Spleen" - }, + "@id": "bts:WorkingGroupParticipation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cell and Tissue Mechanics", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:EducationandOutreach", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "EducationandOutreach", + "rdfs:subClassOf": [ { - "@id": "bts:Stomach" - }, + "@id": "bts:WorkingGroupParticipation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Education and Outreach", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageAnalysis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ImageAnalysis", + "rdfs:subClassOf": [ { - "@id": "bts:SynovialMembrane" + "@id": "bts:WorkingGroupParticipation" }, { - "@id": "bts:Tendon" - }, + "@id": "bts:ToolOperation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Analysis", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NavigatingCancerwithScienceandArt", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NavigatingCancerwithScienceandArt", + "rdfs:subClassOf": [ { - "@id": "bts:Testis" - }, + "@id": "bts:WorkingGroupParticipation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Navigating Cancer with Science and Art", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PatientAdvocacyWorkingGroup", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PatientAdvocacyWorkingGroup", + "rdfs:subClassOf": [ { - "@id": "bts:Thymus" - }, + "@id": "bts:WorkingGroupParticipation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Patient Advocacy Working Group", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Protein-ProteinInteractions", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Protein-ProteinInteractions", + "rdfs:subClassOf": [ { - "@id": "bts:ThyroidGland" - }, + "@id": "bts:WorkingGroupParticipation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Protein-Protein Interactions", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ResourceandDataSharing", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ResourceandDataSharing", + "rdfs:subClassOf": [ { - "@id": "bts:Tongue" - }, + "@id": "bts:WorkingGroupParticipation" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Resource and Data Sharing", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ChairRoles", + "@type": "rdfs:Class", + "rdfs:comment": "Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.", + "rdfs:label": "ChairRoles", + "rdfs:subClassOf": [ { - "@id": "bts:Tonsil" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Trachea" + "@id": "bts:AnnualMeeting" }, { - "@id": "bts:UmbilicalCord" + "@id": "bts:None" }, { - "@id": "bts:Unspecified" + "@id": "bts:SteeringCommittee" }, { - "@id": "bts:Uterus" - }, + "@id": "bts:WorkingGroup" + } + ], + "sms:displayName": "Chair Roles", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:AnnualMeeting", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AnnualMeeting", + "rdfs:subClassOf": [ { - "@id": "bts:Vagina" - }, + "@id": "bts:ChairRoles" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Annual Meeting", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SteeringCommittee", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SteeringCommittee", + "rdfs:subClassOf": [ { - "@id": "bts:VascularEndothelium" - }, + "@id": "bts:ChairRoles" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Steering Committee", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:WorkingGroup", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "WorkingGroup", + "rdfs:subClassOf": [ { - "@id": "bts:Vein" - }, + "@id": "bts:ChairRoles" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Working Group", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ConsentForPortalDisplay", + "@type": "rdfs:Class", + "rdfs:comment": "Consent from individual to display Person information in the CCKP", + "rdfs:label": "ConsentForPortalDisplay", + "rdfs:subClassOf": [ { - "@id": "bts:Vertebra" + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:No" }, { - "@id": "bts:PeripheralBloodMononuclearCell" + "@id": "bts:Yes" } ], - "sms:displayName": "Publication Tissue", + "sms:displayName": "Consent For Portal Display", "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { - "@id": "bts:PublicationAccessibility", + "@id": "bts:PortalDisplay", "@type": "rdfs:Class", - "rdfs:comment": "Whether there are non-monetary restrictions on accessing an the publication.", - "rdfs:label": "PublicationAccessibility", + "rdfs:comment": "Display content in CCKP", + "rdfs:label": "PortalDisplay", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -307568,61 +313058,55 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:OpenAccess" + "@id": "bts:FALSE" }, { - "@id": "bts:RestrictedAccess" + "@id": "bts:TRUE" } ], - "sms:displayName": "Publication Accessibility", + "sms:displayName": "Portal Display", "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:OpenAccess", + "@id": "bts:FALSE", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "OpenAccess", + "rdfs:label": "FALSE", "rdfs:subClassOf": [ { - "@id": "bts:PublicationAccessibility" - }, - { - "@id": "bts:ToolAccessibility" + "@id": "bts:PortalDisplay" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Open Access", + "sms:displayName": "FALSE", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:RestrictedAccess", + "@id": "bts:TRUE", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "RestrictedAccess", + "rdfs:label": "TRUE", "rdfs:subClassOf": [ { - "@id": "bts:PublicationAccessibility" - }, - { - "@id": "bts:ToolAccessibility" + "@id": "bts:PortalDisplay" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Restricted Access", + "sms:displayName": "TRUE", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PublicationView", + "@id": "bts:PersonView", "@type": "rdfs:Class", - "rdfs:comment": "The denormalized manifest for publication submission.", - "rdfs:label": "PublicationView", + "rdfs:comment": "The denormalized manifest for person submission.", + "rdfs:label": "PersonView", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -307631,11 +313115,11 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Publication View", + "sms:displayName": "Person View", "sms:required": "sms:false", "sms:requiresComponent": [ { - "@id": "bts:Study" + "@id": "bts:GrantView" } ], "sms:requiresDependency": [ @@ -307643,64 +313127,67 @@ "@id": "bts:Component" }, { - "@id": "bts:PublicationViewId" + "@id": "bts:PersonViewId" }, { - "@id": "bts:StudyKey" + "@id": "bts:GrantViewKey" }, { - "@id": "bts:GrantViewKey" + "@id": "bts:PersonConsortiumName" }, { - "@id": "bts:PublicationDoi" + "@id": "bts:Name" }, { - "@id": "bts:PublicationJournal" + "@id": "bts:AlternativeNames" }, { - "@id": "bts:PubmedId" + "@id": "bts:Email" }, { - "@id": "bts:PubmedUrl" + "@id": "bts:Url" }, { - "@id": "bts:PublicationTitle" + "@id": "bts:OrcidId" }, { - "@id": "bts:PublicationYear" + "@id": "bts:SynapseProfileId" }, { - "@id": "bts:PublicationKeywords" + "@id": "bts:LastKnownInstitution" }, { - "@id": "bts:PublicationAuthors" + "@id": "bts:WorkingGroupParticipation" }, { - "@id": "bts:PublicationAbstract" + "@id": "bts:ChairRoles" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:ConsentForPortalDisplay" }, { - "@id": "bts:PublicationTumorType" + "@id": "bts:PortalDisplay" }, { - "@id": "bts:PublicationTissue" + "@id": "bts:PersonPublications" }, { - "@id": "bts:PublicationAccessibility" + "@id": "bts:PersonDatasets" }, { - "@id": "bts:PublicationDatasetAlias" + "@id": "bts:PersonTools" + }, + { + "@id": "bts:PersonEducationalResources" } ], "sms:validationRules": [] }, { - "@id": "bts:PublicationViewId", + "@id": "bts:PersonViewId", "@type": "rdfs:Class", "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "PublicationViewId", + "rdfs:label": "PersonViewId", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -307709,36 +313196,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PublicationView_id", + "sms:displayName": "PersonView_id", "sms:required": "sms:true", "sms:validationRules": [ "unique" ] }, { - "@id": "bts:PublicationDatasetAlias", - "@type": "rdfs:Class", - "rdfs:comment": "A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.", - "rdfs:label": "PublicationDatasetAlias", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Publication Dataset Alias", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PublicationGrantNumber", + "@id": "bts:PersonConsortiumName", "@type": "rdfs:Class", - "rdfs:comment": "Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.", - "rdfs:label": "PublicationGrantNumber", + "rdfs:comment": "Consortium(s) associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonConsortiumName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -307749,59 +313217,189 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Affiliated/Non-GrantAssociated" - }, - { - "@id": "bts:CA184897" - }, - { - "@id": "bts:CA184898" - }, - { - "@id": "bts:CA188388" - }, - { - "@id": "bts:CA193313" - }, - { - "@id": "bts:CA193417" + "@id": "bts:CCBIR" }, { - "@id": "bts:CA193419" + "@id": "bts:CSBC" }, { - "@id": "bts:CA193461" + "@id": "bts:HTAN" }, { - "@id": "bts:CA193489" + "@id": "bts:ICBP" }, { - "@id": "bts:CA195469" + "@id": "bts:MetNet" }, { - "@id": "bts:CA199315" + "@id": "bts:NCI" }, { - "@id": "bts:CA202123" + "@id": "bts:NCIClinicalandTranslationalExploratory/DevelopmentalStudies" }, { - "@id": "bts:CA202144" + "@id": "bts:PDMC" }, { - "@id": "bts:CA202177" + "@id": "bts:PS-ON" }, { - "@id": "bts:CA202229" + "@id": "bts:SageBionetworks" }, { - "@id": "bts:CA202241" - }, + "@id": "bts:TEC" + } + ], + "sms:displayName": "Person Consortium Name", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:PersonPublications", + "@type": "rdfs:Class", + "rdfs:comment": "A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonPublications", + "rdfs:subClassOf": [ { - "@id": "bts:CA209891" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Person Publications", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:PersonDatasets", + "@type": "rdfs:Class", + "rdfs:comment": "A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonDatasets", + "rdfs:subClassOf": [ { - "@id": "bts:CA209923" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Person Datasets", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:PersonTools", + "@type": "rdfs:Class", + "rdfs:comment": "A list of the tool names associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonTools", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Person Tools", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:PersonEducationalResources", + "@type": "rdfs:Class", + "rdfs:comment": "A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonEducationalResources", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Person Educational Resources", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:PersonGrantNumber", + "@type": "rdfs:Class", + "rdfs:comment": "Grant number(s) associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonGrantNumber", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Affiliated/Non-GrantAssociated" + }, + { + "@id": "bts:CA184897" + }, + { + "@id": "bts:CA184898" + }, + { + "@id": "bts:CA188388" + }, + { + "@id": "bts:CA193313" + }, + { + "@id": "bts:CA193417" + }, + { + "@id": "bts:CA193419" + }, + { + "@id": "bts:CA193461" + }, + { + "@id": "bts:CA193489" + }, + { + "@id": "bts:CA195469" + }, + { + "@id": "bts:CA199315" + }, + { + "@id": "bts:CA202123" + }, + { + "@id": "bts:CA202144" + }, + { + "@id": "bts:CA202177" + }, + { + "@id": "bts:CA202229" + }, + { + "@id": "bts:CA202241" + }, + { + "@id": "bts:CA209891" + }, + { + "@id": "bts:CA209923" + }, { "@id": "bts:CA209971" }, @@ -308214,17 +313812,17 @@ "@id": "bts:CA293853" } ], - "sms:displayName": "Publication Grant Number", + "sms:displayName": "Person Grant Number", "sms:required": "sms:true", "sms:validationRules": [ "list like" ] }, { - "@id": "bts:SequencingLevel1", + "@id": "bts:ProjectName", "@type": "rdfs:Class", - "rdfs:comment": "Unaligned/unprocessed sequencing data", - "rdfs:label": "SequencingLevel1", + "rdfs:comment": "Name of the project", + "rdfs:label": "ProjectName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308233,74 +313831,158 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Sequencing Level 1", - "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:SequencingLevel1Id" - }, + "sms:displayName": "Project Name", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ProjectType", + "@type": "rdfs:Class", + "rdfs:comment": "Type of project", + "rdfs:label": "ProjectType", + "rdfs:subClassOf": [ { - "@id": "bts:Filename" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Core" }, { - "@id": "bts:NGSLibrarySource" - }, + "@id": "bts:Project" + } + ], + "sms:displayName": "Project Type", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:Core", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Core", + "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySelectionMethod" - }, + "@id": "bts:ProjectType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Core", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Project", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Project", + "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryLayout" + "@id": "bts:ProjectType" }, { - "@id": "bts:NGSSequencingPlatform" - }, + "@id": "bts:ToolEntityType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "project", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProjectDescription", + "@type": "rdfs:Class", + "rdfs:comment": "Description of the project", + "rdfs:label": "ProjectDescription", + "rdfs:subClassOf": [ { - "@id": "bts:NGSSequencingDesignDescription" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Project Description", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ProjectInvestigator", + "@type": "rdfs:Class", + "rdfs:comment": "Investigator(s) associated witht the project.", + "rdfs:label": "ProjectInvestigator", + "rdfs:subClassOf": [ { - "@id": "bts:NGSReadLength" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Project Investigator", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:ProjectView", + "@type": "rdfs:Class", + "rdfs:comment": "The denormalized manifest for project submission.", + "rdfs:label": "ProjectView", + "rdfs:subClassOf": [ { - "@id": "bts:NGSRawReads" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Project View", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:NGSUniqueBases" - }, + "@id": "bts:GrantView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:NGSSequencingCoverage" + "@id": "bts:Component" }, { - "@id": "bts:NGSLibraryPreparationKitName" + "@id": "bts:ProjectViewId" }, { - "@id": "bts:NGSLibraryPreparationKitVendor" + "@id": "bts:GrantViewKey" }, { - "@id": "bts:NGSLibraryPreparationKitVersion" + "@id": "bts:ProjectName" }, { - "@id": "bts:NGSReadIndicator" + "@id": "bts:ProjectType" }, { - "@id": "bts:NGSLibraryPreparationDaysfromIndex" + "@id": "bts:ProjectDescription" }, { - "@id": "bts:NGSSequencingLibraryConstructionDaysfromIndex" + "@id": "bts:ProjectInvestigator" } ], "sms:validationRules": [] }, { - "@id": "bts:SequencingLevel1Id", + "@id": "bts:ProjectViewId", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", - "rdfs:label": "SequencingLevel1Id", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "ProjectViewId", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308309,17 +313991,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "SequencingLevel1_id", + "sms:displayName": "ProjectView_id", "sms:required": "sms:true", "sms:validationRules": [ "unique" ] }, { - "@id": "bts:NGSLibraryStrategy", + "@id": "bts:ProjectGrantNumber", "@type": "rdfs:Class", - "rdfs:comment": "The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)", - "rdfs:label": "NGSLibraryStrategy", + "rdfs:comment": "Grant number(s) associated with the project", + "rdfs:label": "ProjectGrantNumber", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308330,572 +314012,482 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:AMPLICON" + "@id": "bts:Affiliated/Non-GrantAssociated" }, { - "@id": "bts:ATAC-seq" + "@id": "bts:CA184897" }, { - "@id": "bts:Bisulfite-Seq" + "@id": "bts:CA184898" }, { - "@id": "bts:ChIA-PET" + "@id": "bts:CA188388" }, { - "@id": "bts:ChIP-Seq" + "@id": "bts:CA193313" }, { - "@id": "bts:CLONE" + "@id": "bts:CA193417" }, { - "@id": "bts:CLONEEND" + "@id": "bts:CA193419" }, { - "@id": "bts:CTS" + "@id": "bts:CA193461" }, { - "@id": "bts:Spatial-tx" + "@id": "bts:CA193489" }, { - "@id": "bts:SnATAC-Seq" + "@id": "bts:CA195469" }, { - "@id": "bts:DNase-Hypersensitivity" + "@id": "bts:CA199315" }, { - "@id": "bts:ScMultiome" + "@id": "bts:CA202123" }, { - "@id": "bts:EST" + "@id": "bts:CA202144" }, { - "@id": "bts:FAIRE-seq" + "@id": "bts:CA202177" }, { - "@id": "bts:FINISHING" + "@id": "bts:CA202229" }, { - "@id": "bts:FL-cDNA" + "@id": "bts:CA202241" }, { - "@id": "bts:Hi-C" + "@id": "bts:CA209891" }, { - "@id": "bts:MBD-Seq" + "@id": "bts:CA209923" }, { - "@id": "bts:MeDIP-Seq" + "@id": "bts:CA209971" }, { - "@id": "bts:MiRNA-Seq" + "@id": "bts:CA209975" }, { - "@id": "bts:MNase-Seq" + "@id": "bts:CA209978" }, { - "@id": "bts:MRE-Seq" + "@id": "bts:CA209988" }, { - "@id": "bts:NcRNA-Seq" + "@id": "bts:CA209992" }, { - "@id": "bts:Other" + "@id": "bts:CA209997" }, { - "@id": "bts:POOLCLONE" + "@id": "bts:CA210152" }, { - "@id": "bts:RAD-Seq" + "@id": "bts:CA210173" }, { - "@id": "bts:RIP-Seq" + "@id": "bts:CA210180" }, { - "@id": "bts:RNA-Seq" + "@id": "bts:CA210181" }, { - "@id": "bts:SELEX" + "@id": "bts:CA210184" }, { - "@id": "bts:DNA-Seq" + "@id": "bts:CA210190" }, { - "@id": "bts:SsRNA-seq" + "@id": "bts:CA214282" }, { - "@id": "bts:Synthetic-Long-Read" + "@id": "bts:CA214292" }, { - "@id": "bts:Targeted-Capture" + "@id": "bts:CA214297" }, { - "@id": "bts:TetheredChromatinConformationCapture" + "@id": "bts:CA214300" }, { - "@id": "bts:Tn-Seq" + "@id": "bts:CA214354" }, { - "@id": "bts:WCS" + "@id": "bts:CA214369" }, { - "@id": "bts:WGA" + "@id": "bts:CA214381" }, { - "@id": "bts:WGS" + "@id": "bts:CA214411" }, { - "@id": "bts:WXS" - } - ], - "sms:displayName": "NGS Library Strategy", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibrarySource", - "@type": "rdfs:Class", - "rdfs:comment": "The type of source material being sequenced.", - "rdfs:label": "NGSLibrarySource", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Genomic" + "@id": "bts:CA215709" }, { - "@id": "bts:GenomicSingleCell" + "@id": "bts:CA215794" }, { - "@id": "bts:Metagenomic" + "@id": "bts:CA215798" }, { - "@id": "bts:SingleNucleus" + "@id": "bts:CA215845" }, { - "@id": "bts:SingleCell" + "@id": "bts:CA215848" }, { - "@id": "bts:Metatranscriptomic" + "@id": "bts:CA217297" }, { - "@id": "bts:Other" + "@id": "bts:CA217376" }, { - "@id": "bts:Synthetic" + "@id": "bts:CA217377" }, { - "@id": "bts:Transcriptomic" + "@id": "bts:CA217378" }, { - "@id": "bts:TranscriptomicSingleCell" + "@id": "bts:CA217450" }, { - "@id": "bts:ViralRNA" - } - ], - "sms:displayName": "NGS Library Source", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibrarySelectionMethod", - "@type": "rdfs:Class", - "rdfs:comment": "How nucleic acid molecules are isolated.", - "rdfs:label": "NGSLibrarySelectionMethod", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:5-methylcytidineantibody" + "@id": "bts:CA217456" }, { - "@id": "bts:CAGE" + "@id": "bts:CA217514" }, { - "@id": "bts:RRNADepletion" + "@id": "bts:CA217613" }, { - "@id": "bts:CDNA" + "@id": "bts:CA217617" }, { - "@id": "bts:CDNAoligoDT" + "@id": "bts:CA217655" }, { - "@id": "bts:CDNArandompriming" + "@id": "bts:CA220378" }, { - "@id": "bts:CF-H" + "@id": "bts:CA223976" }, { - "@id": "bts:CF-M" + "@id": "bts:CA224012" }, { - "@id": "bts:CF-S" + "@id": "bts:CA224013" }, { - "@id": "bts:CF-T" + "@id": "bts:CA224044" }, { - "@id": "bts:Poly-TEnrichment" + "@id": "bts:CA225088" }, { - "@id": "bts:ChIP" + "@id": "bts:CA225566" }, { - "@id": "bts:DNAse" + "@id": "bts:CA227136" }, { - "@id": "bts:HMPR" + "@id": "bts:CA227544" }, { - "@id": "bts:HybridSelection" + "@id": "bts:CA227550" }, { - "@id": "bts:Notapplicable" + "@id": "bts:CA228608" }, { - "@id": "bts:InverserRNA" + "@id": "bts:CA228963" }, { - "@id": "bts:MBD2proteinmethyl-CpGbindingdomain" + "@id": "bts:CA231978" }, { - "@id": "bts:MiRNASizeFractionation" + "@id": "bts:CA232137" }, { - "@id": "bts:MDA" + "@id": "bts:CA232161" }, { - "@id": "bts:MF" + "@id": "bts:CA232209" }, { - "@id": "bts:MNase" + "@id": "bts:CA232216" }, { - "@id": "bts:MSLL" + "@id": "bts:CA232382" }, { - "@id": "bts:Oligo-dT" + "@id": "bts:CA232517" }, { - "@id": "bts:Other" + "@id": "bts:CA234787" }, { - "@id": "bts:Padlockprobescapturemethod" + "@id": "bts:CA235747" }, { - "@id": "bts:PCR" + "@id": "bts:CA238475" }, { - "@id": "bts:PolyA" + "@id": "bts:CA238720" }, { - "@id": "bts:RACE" + "@id": "bts:CA238728" }, { - "@id": "bts:Random" + "@id": "bts:CA240301" }, { - "@id": "bts:RandomPCR" + "@id": "bts:CA241137" }, { - "@id": "bts:ReducedRepresentation" + "@id": "bts:CA241927" }, { - "@id": "bts:Repeatfractionation" + "@id": "bts:CA243004" }, { - "@id": "bts:RestrictionDigest" + "@id": "bts:CA243007" }, { - "@id": "bts:RT-PCR" + "@id": "bts:CA243072" }, { - "@id": "bts:Sizefractionation" + "@id": "bts:CA243073" }, { - "@id": "bts:AffinityEnrichment" + "@id": "bts:CA243075" }, { - "@id": "bts:Unspecified" - } - ], - "sms:displayName": "NGS Library Selection Method", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibraryLayout", - "@type": "rdfs:Class", - "rdfs:comment": "Text description of the library layout, one of Paired-end or Single.", - "rdfs:label": "NGSLibraryLayout", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Paired-end" + "@id": "bts:CA244100" }, { - "@id": "bts:Single-indexed" - } - ], - "sms:displayName": "NGS Library Layout", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSSequencingPlatform", - "@type": "rdfs:Class", - "rdfs:comment": "A platform is an object aggregate that is the set of instruments and software needed to perform a process [OBI_0000050]. Specific model of the sequencing instrument.", - "rdfs:label": "NGSSequencingPlatform", - "rdfs:subClassOf": [ + "@id": "bts:CA244101" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:CA244107" + }, { - "@id": "bts:454GS" + "@id": "bts:CA244109" }, { - "@id": "bts:454GS20" + "@id": "bts:CA245313" }, { - "@id": "bts:454GSFLX" + "@id": "bts:CA248890" }, { - "@id": "bts:454GSFLXTitanium" + "@id": "bts:CA249799" }, { - "@id": "bts:454GSFLX+" + "@id": "bts:CA250040" }, { - "@id": "bts:454GSJunior" + "@id": "bts:CA250044" }, { - "@id": "bts:AB310GeneticAnalyzer" + "@id": "bts:CA250046" }, { - "@id": "bts:AB3130GeneticAnalyzer" + "@id": "bts:CA250481" }, { - "@id": "bts:AB3130xLGeneticAnalyzer" + "@id": "bts:CA251443" }, { - "@id": "bts:AB3500GeneticAnalyzer" + "@id": "bts:CA253248" }, { - "@id": "bts:AB3500xLGeneticAnalyzer" + "@id": "bts:CA253472" }, { - "@id": "bts:AB3730GeneticAnalyzer" + "@id": "bts:CA253540" }, { - "@id": "bts:AB3730xLGeneticAnalyzer" + "@id": "bts:CA253547" }, { - "@id": "bts:AB5500GeneticAnalyzer" + "@id": "bts:CA253553" }, { - "@id": "bts:AB5500x-WlGeneticAnalyzer" + "@id": "bts:CA254200" }, { - "@id": "bts:AB5500xlGeneticAnalyzer" + "@id": "bts:CA254886" }, { - "@id": "bts:ABSOLiD2" + "@id": "bts:CA256054" }, { - "@id": "bts:ABSOLiD3" + "@id": "bts:CA256481" }, { - "@id": "bts:ABSOLiD3PlusSystem" + "@id": "bts:CA260432" }, { - "@id": "bts:ABSOLiD4" + "@id": "bts:CA261694" }, { - "@id": "bts:ABSOLiD4hqSystem" + "@id": "bts:CA261701" }, { - "@id": "bts:ABSOLiDPISystem" + "@id": "bts:CA261717" }, { - "@id": "bts:ABSOLiDSystem" + "@id": "bts:CA261719" }, { - "@id": "bts:BGISEQ-500" + "@id": "bts:CA261822" }, { - "@id": "bts:CompleteGenomics" + "@id": "bts:CA261841" }, { - "@id": "bts:DNBSEQ-G400" + "@id": "bts:CA261842" }, { - "@id": "bts:DNBSEQ-G50" + "@id": "bts:CA263001" }, { - "@id": "bts:DNBSEQ-T7" + "@id": "bts:CA264583" }, { - "@id": "bts:GridION" + "@id": "bts:CA264610" }, { - "@id": "bts:HelicosHeliScope" + "@id": "bts:CA264611" }, { - "@id": "bts:IlluminaGenomeAnalyzer" + "@id": "bts:CA264620" }, { - "@id": "bts:IlluminaGenomeAnalyzerII" + "@id": "bts:CA267170" }, { - "@id": "bts:IlluminaGenomeAnalyzerIIx" + "@id": "bts:CA268069" }, { - "@id": "bts:IlluminaHiScanSQ" + "@id": "bts:CA268072" }, { - "@id": "bts:IlluminaHiSeq1000" + "@id": "bts:CA268083" }, { - "@id": "bts:IlluminaHiSeq1500" + "@id": "bts:CA268084" }, { - "@id": "bts:IlluminaHiSeq2000" + "@id": "bts:CA271273" }, { - "@id": "bts:IlluminaHiSeq2500" + "@id": "bts:CA274492" }, { - "@id": "bts:IlluminaHiSeq3000" + "@id": "bts:CA274494" }, { - "@id": "bts:IlluminaHiSeq4000" + "@id": "bts:CA274499" }, { - "@id": "bts:IlluminaHiSeqXFive" + "@id": "bts:CA274502" }, { - "@id": "bts:IlluminaHiSeqXTen" + "@id": "bts:CA274509" }, { - "@id": "bts:IlluminaiSeq100" + "@id": "bts:CA275808" }, { - "@id": "bts:IlluminaMiniSeq" + "@id": "bts:CA279408" }, { - "@id": "bts:IlluminaMiSeq" + "@id": "bts:CA279560" }, { - "@id": "bts:IlluminaNextSeq" + "@id": "bts:CA280984" }, { - "@id": "bts:IlluminaNextSeq2500" + "@id": "bts:CA280849" }, { - "@id": "bts:IlluminaNextSeq500" + "@id": "bts:CA280829" }, { - "@id": "bts:IlluminaNextSeq550" + "@id": "bts:CA284090" }, { - "@id": "bts:IlluminaNovaSeq" + "@id": "bts:CA284086" }, { - "@id": "bts:IlluminaNovaSeq6000" + "@id": "bts:CA274504" }, { - "@id": "bts:IlluminaNovaSeqXPlus" + "@id": "bts:CA283114" }, { - "@id": "bts:IonTorrentPGM" + "@id": "bts:CA274507" }, { - "@id": "bts:IonTorrentProton" + "@id": "bts:CA274506" }, { - "@id": "bts:IonTorrentS5" + "@id": "bts:CA274511" }, { - "@id": "bts:IonTorrentS5XL" + "@id": "bts:CA282451" }, { - "@id": "bts:MGISEQ-2000RS" + "@id": "bts:CA284085" }, { - "@id": "bts:MinION" + "@id": "bts:CA283749" }, { - "@id": "bts:NotReported" + "@id": "bts:CA289564" }, { - "@id": "bts:Other" + "@id": "bts:CA293470" }, { - "@id": "bts:PacBioRS" + "@id": "bts:CA279722" }, { - "@id": "bts:PacBioRSII" + "@id": "bts:CA290115" }, { - "@id": "bts:PacBioSequel" + "@id": "bts:CA279948" }, { - "@id": "bts:PacBioSequelII" + "@id": "bts:CA281216" }, { - "@id": "bts:PromethION" + "@id": "bts:CA292382" }, { - "@id": "bts:UltimaGenomicsUG100" + "@id": "bts:CA290442" }, { - "@id": "bts:Unknown" + "@id": "bts:CA293853" } ], - "sms:displayName": "NGS Sequencing Platform", + "sms:displayName": "Project Grant Number", "sms:required": "sms:true", "sms:validationRules": [ - "str" + "list like" ] }, { - "@id": "bts:NGSSequencingDesignDescription", + "@id": "bts:ProjectConsortiumName", "@type": "rdfs:Class", - "rdfs:comment": "Free-form description of the methods used to create the sequencing library; a brief 'materials and methods' section.", - "rdfs:label": "NGSSequencingDesignDescription", + "rdfs:comment": "Consortia associated with the project.", + "rdfs:label": "ProjectConsortiumName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308904,36 +314496,50 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Sequencing Design Description", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSReadLength", - "@type": "rdfs:Class", - "rdfs:comment": "The average length of the sequencing reads. Can be integer, null", - "rdfs:label": "NGSReadLength", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:Thing" + "@id": "bts:CCBIR" + }, + { + "@id": "bts:CSBC" + }, + { + "@id": "bts:HTAN" + }, + { + "@id": "bts:ICBP" + }, + { + "@id": "bts:MetNet" + }, + { + "@id": "bts:NCI" + }, + { + "@id": "bts:NCIClinicalandTranslationalExploratory/DevelopmentalStudies" + }, + { + "@id": "bts:PDMC" + }, + { + "@id": "bts:PS-ON" + }, + { + "@id": "bts:SageBionetworks" + }, + { + "@id": "bts:TEC" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Read Length", + "sms:displayName": "Project Consortium Name", "sms:required": "sms:true", - "sms:validationRules": [ - "num" - ] + "sms:validationRules": [] }, { - "@id": "bts:NGSRawReads", + "@id": "bts:PublicationDoi", "@type": "rdfs:Class", - "rdfs:comment": "Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file.", - "rdfs:label": "NGSRawReads", + "rdfs:comment": "The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.", + "rdfs:label": "PublicationDoi", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308942,17 +314548,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Raw Reads", + "sms:displayName": "Publication Doi", "sms:required": "sms:false", "sms:validationRules": [ - "num" + "unique" ] }, { - "@id": "bts:NGSUniqueBases", + "@id": "bts:PublicationJournal", "@type": "rdfs:Class", - "rdfs:comment": "Count of unique basecalls present in the data.", - "rdfs:label": "NGSUniqueBases", + "rdfs:comment": "The name of the periodical publication in which the publication was published.", + "rdfs:label": "PublicationJournal", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308961,17 +314567,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Unique Bases", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] + "sms:displayName": "Publication Journal", + "sms:required": "sms:true", + "sms:validationRules": [] }, { - "@id": "bts:NGSLibraryPreparationKitName", + "@id": "bts:PubmedId", "@type": "rdfs:Class", - "rdfs:comment": "Name of Library Preparation Kit. String", - "rdfs:label": "NGSLibraryPreparationKitName", + "rdfs:comment": "The PubMed identifier associated with the publication.", + "rdfs:label": "PubmedId", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308980,17 +314584,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Library Preparation Kit Name", - "sms:required": "sms:false", + "sms:displayName": "Pubmed Id", + "sms:required": "sms:true", "sms:validationRules": [ - "str" + "unique" ] }, { - "@id": "bts:NGSLibraryPreparationKitVendor", + "@id": "bts:PubmedUrl", "@type": "rdfs:Class", - "rdfs:comment": "Vendor of Library Preparation Kit. String", - "rdfs:label": "NGSLibraryPreparationKitVendor", + "rdfs:comment": "Pubmed URL for the publication", + "rdfs:label": "PubmedUrl", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -308999,17 +314603,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Library Preparation Kit Vendor", - "sms:required": "sms:false", + "sms:displayName": "Pubmed Url", + "sms:required": "sms:true", "sms:validationRules": [ - "str" + "url" ] }, { - "@id": "bts:NGSLibraryPreparationKitVersion", + "@id": "bts:PublicationTitle", "@type": "rdfs:Class", - "rdfs:comment": "Version of Library Preparation Kit. String", - "rdfs:label": "NGSLibraryPreparationKitVersion", + "rdfs:comment": "Title of the publication", + "rdfs:label": "PublicationTitle", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -309018,17 +314622,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Library Preparation Kit Version", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] + "sms:displayName": "Publication Title", + "sms:required": "sms:true", + "sms:validationRules": [] }, { - "@id": "bts:NGSReadIndicator", + "@id": "bts:PublicationYear", "@type": "rdfs:Class", - "rdfs:comment": "Indicate if this is Read 1 (R1), Read 2 (R2), Index Reads (I1), or Other", - "rdfs:label": "NGSReadIndicator", + "rdfs:comment": "Year of the publication", + "rdfs:label": "PublicationYear", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -309037,34 +314639,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:R1" - }, - { - "@id": "bts:R2" - }, - { - "@id": "bts:R1&R2" - }, - { - "@id": "bts:I1" - }, - { - "@id": "bts:Other" - } - ], - "sms:displayName": "NGS Read Indicator", + "sms:displayName": "Publication Year", "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] + "sms:validationRules": [] }, { - "@id": "bts:NGSLibraryPreparationDaysfromIndex", + "@id": "bts:PublicationKeywords", "@type": "rdfs:Class", - "rdfs:comment": "Number of days between sample for assay was received in lab and the libraries were prepared for sequencing [number]. If not applicable please enter 'Not Applicable'", - "rdfs:label": "NGSLibraryPreparationDaysfromIndex", + "rdfs:comment": "Keywords associated with the publication. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationKeywords", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -309073,17 +314656,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Library Preparation Days from Index", + "sms:displayName": "Publication Keywords", "sms:required": "sms:false", "sms:validationRules": [ - "regex match \\d+$|Not\\sApplicable$|unknown$" + "list like" ] }, { - "@id": "bts:NGSSequencingLibraryConstructionDaysfromIndex", + "@id": "bts:PublicationAuthors", "@type": "rdfs:Class", - "rdfs:comment": "Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable'", - "rdfs:label": "NGSSequencingLibraryConstructionDaysfromIndex", + "rdfs:comment": "Authors of the publication. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationAuthors", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -309092,3080 +314675,1774 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Sequencing Library Construction Days from Index", + "sms:displayName": "Publication Authors", "sms:required": "sms:true", "sms:validationRules": [ - "regex match \\d+$|Not\\sApplicable$|unknown$" + "list like" ] }, { - "@id": "bts:5-methylcytidineantibody", + "@id": "bts:PublicationAbstract", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "5-methylcytidineantibody", + "rdfs:comment": "The abstract of the publication.", + "rdfs:label": "PublicationAbstract", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySelectionMethod" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "5-methylcytidine antibody", - "sms:required": "sms:false", + "sms:displayName": "Publication Abstract", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:CAGE", + "@id": "bts:PublicationAssay", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CAGE", + "rdfs:comment": "Assay(s) associated with the publication. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationAssay", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySelectionMethod" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CAGE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RRNADepletion", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RRNADepletion", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:NGSLibrarySelectionMethod" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "rRNA Depletion", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CDNA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CDNA", - "rdfs:subClassOf": [ + "@id": "bts:10-cellRNASequencing" + }, { - "@id": "bts:VisiumSpatialRead1" + "@id": "bts:16SRibosomalGeneSequencingAssay" }, { - "@id": "bts:VisiumSpatialRead2" + 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"@id": "bts:NGSSequencingCoverage" + "@id": "bts:PancreaticCarcinoma" }, { - "@id": "bts:GenomicReference" + "@id": "bts:PancreaticDuctalAdenocarcinoma" }, { - "@id": "bts:SoftwareandVersion" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingLevel2Id", - "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", - "rdfs:label": "SequencingLevel2Id", - "rdfs:subClassOf": [ + "@id": "bts:PancreaticNeoplasm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel2_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:SequencingLevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:PancreaticNeuroendocrineCarcinoma" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel1 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel1.SequencingLevel1_id Value" - ] - }, - { - "@id": "bts:NGSStitchedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads", - "rdfs:label": "NGSStitchedReads", - "rdfs:subClassOf": [ + "@id": "bts:PendingAnnotation" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Stitched Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSAlignedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.", - "rdfs:label": "NGSAlignedReads", - "rdfs:subClassOf": [ + "@id": "bts:PenileCarcinoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Aligned Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSDeduplicatedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Is the replacement of blocks of duplicate data with a Virtual Index Pointer linking the new sub-block to the existing block of data in a duplicate repository. This is used to reduce the amount of space need to store the data.", - "rdfs:label": "NGSDeduplicatedReads", - "rdfs:subClassOf": [ + "@id": "bts:Pheochromocytoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Deduplicated Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSTrimmedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Number of the reads remaining after trimming has been applied.", - "rdfs:label": "NGSTrimmedReads", - "rdfs:subClassOf": [ + "@id": "bts:PilocyticAstrocytoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Trimmed Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GenomicReference", - "@type": "rdfs:Class", - "rdfs:comment": "Exact version of the human genome reference used in the alignment of reads (e.g. GCF_000001405.39)", - "rdfs:label": "GenomicReference", - "rdfs:subClassOf": [ + "@id": "bts:PituitaryGlandAdenoma" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic Reference", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:SequencingLevel3", - "@type": "rdfs:Class", - "rdfs:comment": "Sequencing data that has been aligned with a reference genome.", - "rdfs:label": "SequencingLevel3", - "rdfs:subClassOf": [ + "@id": "bts:PlasmablasticLymphoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sequencing Level 3", - "sms:required": "sms:false", - "sms:requiresDependency": [ + "@id": "bts:Plasmacytoma" + }, { - "@id": "bts:Component" + "@id": "bts:PlexiformSchwannoma" }, { - "@id": "bts:SequencingLevel3Id" + "@id": "bts:PrecursorB-celllymphoblasticleukemia" }, { - "@id": "bts:SequencingLevel2Key" + "@id": "bts:PrimaryCentralNervousSystemLymphoma" }, { - "@id": "bts:Filename" + "@id": "bts:PrimaryMyelofibrosis" }, { - "@id": "bts:NGSUniqueProbeCount" + "@id": "bts:ProstateAdenocarcinoma" }, { - "@id": "bts:NGSUniqueTargetCount" + "@id": "bts:ProstateCarcinoma" }, { - "@id": "bts:NGSMatrixType" + "@id": "bts:ProstateNeoplasm" }, { - "@id": "bts:SoftwareandVersion" + "@id": "bts:RectalAdenocarcinoma" }, { - "@id": "bts:WorkflowType" + "@id": "bts:RenalCellCarcinoma" }, { - "@id": "bts:WorkflowParameterDescription" + "@id": "bts:Retinoblastoma" }, { - "@id": "bts:WorkflowLink" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingLevel3Id", - "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", - "rdfs:label": "SequencingLevel3Id", - "rdfs:subClassOf": [ + "@id": "bts:Rhabdomyosarcoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel3_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:SequencingLevel2Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel2Key", - "rdfs:subClassOf": [ + "@id": "bts:Rosette-FormingGlioneuronalTumor" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel2 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel2.SequencingLevel2_id Value" - ] - }, - { - "@id": "bts:NGSUniqueProbeCount", - "@type": "rdfs:Class", - "rdfs:comment": "Total number of unique probes reported.", - "rdfs:label": "NGSUniqueProbeCount", - "rdfs:subClassOf": [ + "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Unique Probe Count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSUniqueTargetCount", - "@type": "rdfs:Class", - "rdfs:comment": "Total number of unique genes reported.", - "rdfs:label": "NGSUniqueTargetCount", - "rdfs:subClassOf": [ + "@id": "bts:Sarcoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Unique Target Count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSMatrixType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of count data stored in matrix.", - "rdfs:label": "NGSMatrixType", - "rdfs:subClassOf": [ + "@id": "bts:Schwannoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:SerousTubalIntraepithelialCarcinoma" + }, { - "@id": "bts:RawCounts" + "@id": "bts:SinonasalSquamousCellCarcinoma" }, { - "@id": "bts:NormalizedCounts" + "@id": "bts:SkinCarcinoma" }, { - "@id": "bts:ScaledCounts" + "@id": "bts:SkinNeoplasm" }, { - "@id": "bts:BatchCorrectedCounts" - } - ], - "sms:displayName": "NGS Matrix Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkflowType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of computational workflow used to generate the file.", - "rdfs:label": "WorkflowType", - "rdfs:subClassOf": [ + "@id": "bts:SoftTissueSarcoma" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Type", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:WorkflowParameterDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Link or text description of flags or options provided to the workflow used to generate the file.", - "rdfs:label": "WorkflowParameterDescription", - "rdfs:subClassOf": [ + "@id": "bts:SquamousCellCarcinoma" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Parameter Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:WorkflowLink", - "@type": "rdfs:Class", - "rdfs:comment": "Link to documentation or webpage associated with the computational workflow used to generate the file.", - "rdfs:label": "WorkflowLink", - "rdfs:subClassOf": [ + "@id": "bts:SynovialSarcoma" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Link", - "sms:required": "sms:false", - "sms:validationRules": [ - "url" - ] - }, - { - "@id": "bts:RawCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RawCounts", - "rdfs:subClassOf": [ + "@id": "bts:TAcuteLymphoblasticLeukemia" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Raw Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NormalizedCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NormalizedCounts", - "rdfs:subClassOf": [ + "@id": "bts:T-CellLymphoma" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Normalized Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ScaledCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ScaledCounts", - "rdfs:subClassOf": [ + "@id": "bts:Teratoma" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Scaled Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:BatchCorrectedCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "BatchCorrectedCounts", - "rdfs:subClassOf": [ + "@id": "bts:TesticularEmbryonalCarcinoma" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Batch Corrected Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingRNALevel1", - "@type": "rdfs:Class", - "rdfs:comment": "Unaligned/unprocessed RNA sequencing data", - "rdfs:label": "SequencingRNALevel1", - "rdfs:subClassOf": [ + "@id": "bts:ThyroidGlandAnaplasticCarcinoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sequencing RNA Level 1", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:ThyroidGlandCarcinoma" + }, { - "@id": "bts:SequencingLevel1" - } - ], - "sms:requiresDependency": [ + "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures" + }, { - "@id": "bts:Component" + "@id": "bts:Triple-NegativeBreastCarcinoma" }, { - "@id": "bts:SequencingRNALevel1Id" + "@id": "bts:UrothelialCarcinoma" }, { - "@id": "bts:Filename" + "@id": "bts:UterineAdenosarcoma" }, { - "@id": "bts:NGSRNAEndBias" + "@id": "bts:UvealMelanoma" }, { - "@id": "bts:NGSRNAReverseTranscriptionPrimer" + "@id": "bts:UvealNeoplasm" }, { - "@id": "bts:NGSRNARIN" + "@id": "bts:VascularNeoplasm" }, { - "@id": "bts:NGSRNADV200" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingRNALevel1Id", - "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", - "rdfs:label": "SequencingRNALevel1Id", - "rdfs:subClassOf": [ + "@id": "bts:Not-Applicable" + }, { - "@id": "bts:Thing" + "@id": "bts:PlexiformNeurofibroma" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingRNALevel1_id", + "sms:displayName": "Publication Tumor Type", "sms:required": "sms:true", "sms:validationRules": [ - "unique" + "list like" ] }, { - "@id": "bts:NGSRNAEndBias", + "@id": "bts:PublicationTissue", "@type": "rdfs:Class", - "rdfs:comment": "The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript", - "rdfs:label": "NGSRNAEndBias", + "rdfs:comment": "Tissue type(s) associated with the publication. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationTissue", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -312176,917 +316453,424 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:3Prime" + "@id": "bts:Gonad" }, { - "@id": "bts:5Prime" + "@id": "bts:AbdominalEsophagus" }, { - "@id": "bts:FullLengthTranscript" - } - ], - "sms:displayName": "NGS RNA End Bias", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSRNAReverseTranscriptionPrimer", - "@type": "rdfs:Class", - "rdfs:comment": "An oligo to which new deoxyribonucleotides can be added by DNA polymerase [SO_0000112]. The type of primer used for reverse transcription, e.g. oligo-dT or random primer. This allows users to identify content of the cDNA library input e.g. enriched for mRNA", - "rdfs:label": "NGSRNAReverseTranscriptionPrimer", - "rdfs:subClassOf": [ + "@id": "bts:AdiposeTissue" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:AdrenalGland" + }, { - "@id": "bts:Oligo-dT" + "@id": "bts:Alveolus" }, { - "@id": "bts:Poly-dT" + "@id": "bts:Aorta" }, { - "@id": "bts:Featurebarcoding" + "@id": "bts:Artery" }, { - "@id": "bts:Random" - } - ], - "sms:displayName": "NGS RNA Reverse Transcription Primer", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSRNARIN", - "@type": "rdfs:Class", - "rdfs:comment": "A numerical assessment of the integrity of RNA based on the entire electrophoretic trace of the RNA sample including the presence or absence of degradation products. Number", - "rdfs:label": "NGSRNARIN", - "rdfs:subClassOf": [ + "@id": "bts:AscendingColon" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS RNA RIN", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSRNADV200", - "@type": "rdfs:Class", - "rdfs:comment": "Represents the percentage of RNA fragments that are >200 nucleotides in size. Number", - "rdfs:label": "NGSRNADV200", - "rdfs:subClassOf": [ + "@id": "bts:BileDuct" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS RNA DV200", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:3Prime", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "3Prime", - "rdfs:subClassOf": [ + "@id": "bts:Bladder" + }, { - "@id": "bts:NGSRNAEndBias" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "3 Prime", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:5Prime", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "5Prime", - "rdfs:subClassOf": [ + "@id": "bts:Blood" + }, { - "@id": "bts:NGSRNAEndBias" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "5 Prime", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FullLengthTranscript", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "FullLengthTranscript", - "rdfs:subClassOf": [ + "@id": "bts:BloodVessel" + }, { - "@id": "bts:NGSRNAEndBias" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Full Length Transcript", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Poly-dT", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Poly-dT", - "rdfs:subClassOf": [ + "@id": "bts:Bone" + }, { - "@id": "bts:NGSRNAReverseTranscriptionPrimer" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Poly-dT", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Featurebarcoding", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Featurebarcoding", - "rdfs:subClassOf": [ + "@id": "bts:BoneMarrow" + }, { - "@id": "bts:NGSRNAReverseTranscriptionPrimer" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Feature barcoding", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Shared", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Shared", - "rdfs:subClassOf": [ + "@id": "bts:Brain" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "shared", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IRB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IRB", - "rdfs:subClassOf": [ + "@id": "bts:Breast" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Caecum" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Cancer-AssociatedFibroblast" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "IRB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:HMB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "HMB", - "rdfs:subClassOf": [ + "@id": "bts:Cardia" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Cartilage" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:CervixUteri" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "HMB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PUB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PUB", - "rdfs:subClassOf": [ + "@id": "bts:Choroid" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Colon" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:ConnectiveandSoftTissue" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PUB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:US", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "US", - "rdfs:subClassOf": [ + "@id": "bts:Cornea" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Duodenum" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Ear" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:Embryo" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "US", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPOA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPOA", - "rdfs:subClassOf": [ + "@id": "bts:EmbryonicHeart" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Endocervix" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Endometrium" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPOA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:COL", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "COL", - "rdfs:subClassOf": [ + "@id": "bts:Endothelium" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Epithelium" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Esophagus" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "COL", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NCU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NCU", - "rdfs:subClassOf": [ + "@id": "bts:Eye" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:FallopianTube" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Foreskin" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NCU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPUNCU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPUNCU", - "rdfs:subClassOf": [ + "@id": "bts:FrontalLobe" + }, + { + "@id": "bts:GastroesophagealJunction" + }, + { + "@id": "bts:GastrointestinalTract" + }, + { + "@id": "bts:Genitourinary" + }, + { + "@id": "bts:HairFollicle" + }, + { + "@id": "bts:HeadandNeck" + }, + { + "@id": "bts:Heart" + }, + { + "@id": "bts:HeartMuscle" + }, + { + "@id": "bts:HematopoieticSystem" + }, + { + "@id": "bts:Hippocampus" + }, + { + "@id": "bts:Intestine" + }, + { + "@id": "bts:Intra-AbdominalLymphNodes" + }, + { + "@id": "bts:IntrathoracicLymphNodes" + }, + { + "@id": "bts:Joint" + }, + { + "@id": "bts:Kidney" + }, + { + "@id": "bts:Larynx" + }, + { + "@id": "bts:Ligament" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Liver" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Lung" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPUNCU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RS", - "rdfs:subClassOf": [ + "@id": "bts:Lymph" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:LymphNode" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:LymphNodesofAxillaorArm" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:LymphNodesofInguinalRegionorLeg" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TS", - "rdfs:subClassOf": [ + "@id": "bts:LymphaticSystem" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:LymphoidTissue" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:MainBronchus" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NRES", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NRES", - "rdfs:subClassOf": [ + "@id": "bts:MammaryGland" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Meninges" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Mesenchyme" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NRES", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPU", - "rdfs:subClassOf": [ + "@id": "bts:Mucosa" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Muscle" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:NasalCavity" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DUM", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DUM", - "rdfs:subClassOf": [ + "@id": "bts:NervousSystem" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:NotApplicable" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:OlfactoryMucosa" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DUM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:POA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "POA", - "rdfs:subClassOf": [ + "@id": "bts:Omentum" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:OralCavity" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:OralMucosa" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "POA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MOR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MOR", - "rdfs:subClassOf": [ + "@id": "bts:Ovary" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Pancreas" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:PelvicLymphNodes" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MOR", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GSO", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GSO", - "rdfs:subClassOf": [ + "@id": "bts:PendingAnnotation" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:PeriodontalLigament" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:PeripheralNerves" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GSO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RTN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RTN", - "rdfs:subClassOf": [ + "@id": "bts:Peritoneum" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Pharynx" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:PituitaryGland" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RTN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CC", - "rdfs:subClassOf": [ + "@id": "bts:Placenta" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Pleura" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:ProstateGland" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:Rectum" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "CC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NMDS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NMDS", - "rdfs:subClassOf": [ + "@id": "bts:ReproductiveSystem" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:RespiratorySystem" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:SalivaryGland" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NMDS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IS", - "rdfs:subClassOf": [ + "@id": "bts:Sclera" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:SinonasalTract" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Skin" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:SmallIntestine" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "IS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GS", - "rdfs:subClassOf": [ + "@id": "bts:SpinalCord" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Spleen" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Stomach" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:SynovialMembrane" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DS", - "rdfs:subClassOf": [ + "@id": "bts:Tendon" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Testis" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Thymus" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GRU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GRU", - "rdfs:subClassOf": [ + "@id": "bts:ThyroidGland" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Tongue" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Tonsil" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GRU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PS", - "rdfs:subClassOf": [ + "@id": "bts:Trachea" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:UmbilicalCord" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Unspecified" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:Uterus" }, { - "@id": "bts:ToolInputFormat" + "@id": "bts:Vagina" }, { - "@id": "bts:ToolOutputFormat" + "@id": "bts:VascularEndothelium" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ProjectViewKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ProjectView_id foreign key(s) that group the resource with other components, as part of the same grant-associated studies. Please provide multiple values as a comma-separated list.", - "rdfs:label": "ProjectViewKey", - "rdfs:subClassOf": [ + "@id": "bts:Vein" + }, { - "@id": "bts:Project" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ProjectView Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ProjectView.ProjectView_id Value" - ] - }, - { - "@id": "bts:PersonViewKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique PersonView_id foreign key(s) that group the resource with other components, as part of the same person-associated studies. Please provide multiple values as a comma-separated list.", - "rdfs:label": "PersonViewKey", - "rdfs:subClassOf": [ + "@id": "bts:Vertebra" + }, { - "@id": "bts:Person" + "@id": "bts:PeripheralBloodMononuclearCell" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PersonView Key", - "sms:required": "sms:false", + "sms:displayName": "Publication Tissue", + "sms:required": "sms:true", "sms:validationRules": [ - "matchAtLeastOne PersonView.PersonView_id Value" + "list like" ] }, { - "@id": "bts:Person", + "@id": "bts:PublicationAccessibility", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Person", + "rdfs:comment": "Whether there are non-monetary restrictions on accessing an the publication.", + "rdfs:label": "PublicationAccessibility", "rdfs:subClassOf": [ { - "@id": "bts:ToolEntityType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Person", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConsortiumKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique Consortium_id foreign key(s) that group the resource with other components, as part of the same consortium-associated grants. Please provide multiple values as a comma-separated list.", - "rdfs:label": "ConsortiumKey", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:Consortium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Consortium Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne Consortium.Consortium_id Value" - ] - }, - { - "@id": "bts:Grant", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Grant", - "rdfs:subClassOf": [ + "@id": "bts:OpenAccess" + }, { - "@id": "bts:Thing" + "@id": "bts:RestrictedAccess" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "grant", - "sms:required": "sms:false", + "sms:displayName": "Publication Accessibility", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:Dataset", + "@id": "bts:OpenAccess", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Dataset", + "rdfs:label": "OpenAccess", "rdfs:subClassOf": [ { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "dataset", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Publication", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Publication", - "rdfs:subClassOf": [ + "@id": "bts:PublicationAccessibility" + }, { - "@id": "bts:Thing" + "@id": "bts:ToolAccessibility" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "publication", + "sms:displayName": "Open Access", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Tool", + "@id": "bts:RestrictedAccess", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Tool", + "rdfs:label": "RestrictedAccess", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:PublicationAccessibility" + }, + { + "@id": "bts:ToolAccessibility" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "tool", + "sms:displayName": "Restricted Access", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Education", + "@id": "bts:PublicationView", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Education", + "rdfs:comment": "The denormalized manifest for publication submission.", + "rdfs:label": "PublicationView", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -313095,1907 +316879,3958 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "education", + "sms:displayName": "Publication View", "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DataDSPKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique DataDSP_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.", - "rdfs:label": "DataDSPKey", - "rdfs:subClassOf": [ + "sms:requiresComponent": [ { - "@id": "bts:SharingPlans" + "@id": "bts:Study" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DataDSP Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne DataDSP.DataDSP_id Value" - ] - }, - { - "@id": "bts:SharingPlans", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SharingPlans", - "rdfs:subClassOf": [ + "sms:requiresDependency": [ { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sharingPlans", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FileViewKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique FileView_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "FileViewKey", - "rdfs:subClassOf": [ + "@id": "bts:Component" + }, { - "@id": "bts:File" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "FileView Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne FileView.FileView_id Value" - ] - }, - { - "@id": "bts:File", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "File", - "rdfs:subClassOf": [ + "@id": "bts:PublicationViewId" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "file", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Geomx", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Geomx", - "rdfs:subClassOf": [ + "@id": "bts:StudyKey" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "geomx", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPImagingKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPImaging_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPImagingKey", - "rdfs:subClassOf": [ + "@id": "bts:GrantViewKey" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPImaging Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPImaging.NanoStringGeoMxDSPImaging_id Value" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel3Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel3Key", - "rdfs:subClassOf": [ + "@id": "bts:PublicationDoi" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel3 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPLevel3.NanoStringGeoMxDSPLevel3_id Value" - ] - }, - { - "@id": "bts:ImagingLevel4Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel4Key", - "rdfs:subClassOf": [ + "@id": "bts:PublicationJournal" + }, { - "@id": "bts:Imaging" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ImagingLevel4 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel4.ImagingLevel4_id Value" - ] - }, - { - "@id": "bts:Sequencing", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sequencing", - "rdfs:subClassOf": [ + "@id": "bts:PubmedId" + }, { - "@id": "bts:ToolTopic" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sequencing", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingLevel3Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel3Key", - "rdfs:subClassOf": [ + "@id": "bts:PubmedUrl" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel3 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel3.SequencingLevel3_id Value" - ] - }, - { - "@id": "bts:SequencingLevel4Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel4Key", - "rdfs:subClassOf": [ + "@id": "bts:PublicationTitle" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel4 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel4.SequencingLevel4_id Value" - ] - }, - { - "@id": "bts:SequencingRNALevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingRNALevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:PublicationYear" + }, { - "@id": "bts:SequencingRNA" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingRNALevel1 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingRNALevel1.SequencingRNALevel1_id Value" - ] - }, - { - "@id": "bts:SequencingRNA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SequencingRNA", - "rdfs:subClassOf": [ + "@id": "bts:PublicationKeywords" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sequencing RNA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:10xVisiumRNALevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:PublicationAuthors" + }, { - "@id": "bts:Visium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "10xVisiumRNALevel1 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel1.10xVisiumRNALevel1_id Value" - ] - }, - { - "@id": "bts:Visium", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Visium", - "rdfs:subClassOf": [ + "@id": "bts:PublicationAbstract" + }, { - "@id": "bts:Thing" + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:PublicationAccessibility" + }, + { + "@id": "bts:PublicationDatasetAlias" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "visium", - "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:10xVisiumRNALevel2Key", + "@id": "bts:PublicationViewId", "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel2Key", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "PublicationViewId", "rdfs:subClassOf": [ { - "@id": "bts:Visium" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "10xVisiumRNALevel2 Key", - "sms:required": "sms:false", + "sms:displayName": "PublicationView_id", + "sms:required": "sms:true", "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel2.10xVisiumRNALevel2_id Value" + "unique" ] }, { - "@id": "bts:10xVisiumRNALevel3Key", + "@id": "bts:PublicationDatasetAlias", "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel3Key", + "rdfs:comment": "A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationDatasetAlias", "rdfs:subClassOf": [ { - "@id": "bts:Visium" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "10xVisiumRNALevel3 Key", + "sms:displayName": "Publication Dataset Alias", "sms:required": "sms:false", "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel3.10xVisiumRNALevel3_id Value" + "list like" ] }, { - "@id": "bts:10xVisiumRNALevel4Key", + "@id": "bts:PublicationGrantNumber", "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel4Key", + "rdfs:comment": "Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationGrantNumber", "rdfs:subClassOf": [ { - "@id": "bts:Visium" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "10xVisiumRNALevel4 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel4.10xVisiumRNALevel4_id Value" - ] - }, - { - "@id": "bts:10xVisiumAuxiliaryFilesKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumAuxiliaryFilesKey", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:Visium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "10xVisiumAuxiliaryFiles Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumAuxiliaryFiles.10xVisiumAuxiliaryFiles_id Value" - ] - }, - { - "@id": "bts:WorkflowVersion", - "@type": "rdfs:Class", - "rdfs:comment": "Major version of the workflow (e.g. Cell Ranger v3.1)", - "rdfs:label": "WorkflowVersion", - "rdfs:subClassOf": [ + "@id": "bts:Affiliated/Non-GrantAssociated" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Version", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:GenomicReferenceURL", - "@type": "rdfs:Class", - "rdfs:comment": "Link to human genome sequence; ftp or reference URL will be accepted.", - "rdfs:label": "GenomicReferenceURL", - "rdfs:subClassOf": [ + "@id": "bts:CA184897" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic Reference URL", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] - }, - { - "@id": "bts:GenomeAnnotationURL", - "@type": "rdfs:Class", - "rdfs:comment": "Link to the human genome annotation (GTF) file; ftp or reference URL will be accepted.", - "rdfs:label": "GenomeAnnotationURL", - "rdfs:subClassOf": [ + "@id": "bts:CA184898" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genome Annotation URL", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] - }, - { - "@id": "bts:DataDSP", - "@type": "rdfs:Class", - "rdfs:comment": "Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.", - "rdfs:label": "DataDSP", - "rdfs:subClassOf": [ + "@id": "bts:CA188388" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DataDSP", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:CA193313" + }, + { + "@id": "bts:CA193417" + }, + { + "@id": "bts:CA193419" + }, + { + "@id": "bts:CA193461" + }, + { + "@id": "bts:CA193489" + }, + { + "@id": "bts:CA195469" + }, + { + "@id": "bts:CA199315" + }, + { + "@id": "bts:CA202123" + }, + { + "@id": "bts:CA202144" + }, + { + "@id": "bts:CA202177" + }, + { + "@id": "bts:CA202229" + }, + { + "@id": "bts:CA202241" + }, + { + "@id": "bts:CA209891" + }, + { + "@id": "bts:CA209923" + }, + { + "@id": "bts:CA209971" + }, + { + "@id": "bts:CA209975" + }, + { + "@id": "bts:CA209978" + }, + { + "@id": "bts:CA209988" + }, + { + "@id": "bts:CA209992" + }, + { + "@id": "bts:CA209997" + }, + { + "@id": "bts:CA210152" + }, + { + "@id": "bts:CA210173" + }, + { + "@id": "bts:CA210180" + }, + { + "@id": "bts:CA210181" + }, + { + "@id": "bts:CA210184" + }, + { + "@id": "bts:CA210190" + }, + { + "@id": "bts:CA214282" + }, { - "@id": "bts:Study" - } - ], - "sms:requiresDependency": [ + "@id": "bts:CA214292" + }, { - "@id": "bts:Component" + "@id": "bts:CA214297" }, { - "@id": "bts:DataDSPId" + "@id": "bts:CA214300" }, { - "@id": "bts:GrantViewKey" + "@id": "bts:CA214354" }, { - "@id": "bts:StudyKey" + "@id": "bts:CA214369" }, { - "@id": "bts:DatasetViewKey" + "@id": "bts:CA214381" }, { - "@id": "bts:DSPDatasetAlias" + "@id": "bts:CA214411" }, { - "@id": "bts:DSPDatasetName" + "@id": "bts:CA215709" }, { - "@id": "bts:DSPDatasetUrl" + "@id": "bts:CA215794" }, { - "@id": "bts:DSPDatasetAssay" + "@id": "bts:CA215798" }, { - "@id": "bts:DSPDatasetLevel" + "@id": "bts:CA215845" }, { - "@id": "bts:DSPDatasetSpecies" + "@id": "bts:CA215848" }, { - "@id": "bts:DSPDatasetTumorType" + "@id": "bts:CA217297" }, { - "@id": "bts:DSPDatasetTissue" + "@id": "bts:CA217376" }, { - "@id": "bts:DSPDatasetFileFormats" + "@id": "bts:CA217377" }, { - "@id": "bts:DSPNumberofFiles" + "@id": "bts:CA217378" }, { - "@id": "bts:DSPNumberofSamples" + "@id": "bts:CA217450" }, { - "@id": "bts:DSPNumberofParticipants" + "@id": "bts:CA217456" }, { - "@id": "bts:DSPStorageSize" + "@id": "bts:CA217514" }, { - "@id": "bts:DSPDatasetDescription" + "@id": "bts:CA217613" }, { - "@id": "bts:DSPPlannedUploadDate" + "@id": "bts:CA217617" }, { - "@id": "bts:DSPPlannedReleaseDate" + "@id": "bts:CA217655" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:CA220378" }, { - "@id": "bts:DSPIRBForm" + "@id": "bts:CA223976" }, { - "@id": "bts:DSPDatasetDestination" + "@id": "bts:CA224012" }, { - "@id": "bts:DSPDatasetMetadata" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:DataDSPId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "DataDSPId", - "rdfs:subClassOf": [ + "@id": "bts:CA224013" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DataDSP_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:DSPDatasetAlias", - "@type": "rdfs:Class", - "rdfs:comment": "Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.", - "rdfs:label": "DSPDatasetAlias", - "rdfs:subClassOf": [ + "@id": "bts:CA224044" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Alias", - "sms:required": "sms:false", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:DSPDatasetName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of the dataset", - "rdfs:label": "DSPDatasetName", - "rdfs:subClassOf": [ + "@id": "bts:CA225088" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:DSPDatasetUrl", - "@type": "rdfs:Class", - "rdfs:comment": "The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.", - "rdfs:label": "DSPDatasetUrl", - "rdfs:subClassOf": [ + "@id": "bts:CA225566" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Url", - "sms:required": "sms:false", - "sms:validationRules": [ - "url" - ] - }, - { - "@id": "bts:DSPDatasetAssay", - "@type": "rdfs:Class", - "rdfs:comment": "The type of data contained in this group of files. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetAssay", - "rdfs:subClassOf": [ + "@id": "bts:CA227136" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:CA227544" + }, { - "@id": "bts:10-cellRNASequencing" + "@id": "bts:CA227550" }, { - "@id": "bts:16SRibosomalGeneSequencingAssay" + "@id": "bts:CA228608" }, { - "@id": "bts:3'RNA-seq" + "@id": "bts:CA228963" }, { - "@id": "bts:3C" + "@id": "bts:CA231978" }, { - "@id": "bts:3C-qPCR" + "@id": "bts:CA232137" }, { - "@id": "bts:3DATAC-PALM" + "@id": "bts:CA232161" }, { - "@id": "bts:3DBioprinting" + "@id": "bts:CA232209" }, { - "@id": "bts:3DCellCulture" + "@id": "bts:CA232216" }, { - "@id": "bts:4C" + "@id": "bts:CA232382" }, { - "@id": "bts:5C" + "@id": "bts:CA232517" }, { - "@id": "bts:ATAC-Seq" + "@id": "bts:CA234787" }, { - "@id": "bts:ATPBioluminescenceAssay" + "@id": "bts:CA235747" }, { - "@id": "bts:AffinityPurificationMassSpectrometry" + "@id": "bts:CA238475" }, { - 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"@id": "bts:LungNeoplasm" + "@id": "bts:NGSTrimmedReads" }, { - "@id": "bts:LungNon-SmallCellCarcinoma" + "@id": "bts:NGSMapQ30" }, { - "@id": "bts:LungSmallCellCarcinoma" + "@id": "bts:NGSUniqueBases" }, { - "@id": "bts:LungSquamousCellCarcinoma" + "@id": "bts:NGSReadLength" }, { - "@id": "bts:LymphoidLeukemia" + "@id": "bts:NGSSequencingCoverage" }, { - "@id": "bts:Lymphoma" + "@id": "bts:GenomicReference" }, { - "@id": "bts:MalignantBrainNeoplasm" - }, + "@id": "bts:SoftwareandVersion" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingLevel2Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", + "rdfs:label": "SequencingLevel2Id", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantDigestiveSystemNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel2_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:SequencingLevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantGenitourinarySystemNeoplasm" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel1.SequencingLevel1_id Value" + ] + }, + { + "@id": "bts:NGSStitchedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads", + "rdfs:label": "NGSStitchedReads", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantGlioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Stitched Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSAlignedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.", + "rdfs:label": "NGSAlignedReads", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Aligned Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSDeduplicatedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Is the replacement of blocks of duplicate data with a Virtual Index Pointer linking the new sub-block to the existing block of data in a duplicate repository. This is used to reduce the amount of space need to store the data.", + "rdfs:label": "NGSDeduplicatedReads", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantOvarianNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Deduplicated Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSTrimmedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Number of the reads remaining after trimming has been applied.", + "rdfs:label": "NGSTrimmedReads", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantPancreaticNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Trimmed Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:GenomicReference", + "@type": "rdfs:Class", + "rdfs:comment": "Exact version of the human genome reference used in the alignment of reads (e.g. GCF_000001405.39)", + "rdfs:label": "GenomicReference", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantPeripheralNerveSheathTumor" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genomic Reference", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:SequencingLevel3", + "@type": "rdfs:Class", + "rdfs:comment": "Sequencing data that has been aligned with a reference genome.", + "rdfs:label": "SequencingLevel3", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantPeritonealNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sequencing Level 3", + "sms:required": "sms:false", + "sms:requiresDependency": [ { - "@id": "bts:MalignantSkinNeoplasm" + "@id": "bts:Component" }, { - "@id": "bts:MantleCellLymphoma" + "@id": "bts:SequencingLevel3Id" }, { - "@id": "bts:MarginalZoneLymphoma" + "@id": "bts:SequencingLevel2Key" }, { - "@id": "bts:Medulloblastoma" + "@id": "bts:Filename" }, { - "@id": "bts:Melanoma" + "@id": "bts:NGSUniqueProbeCount" }, { - "@id": "bts:Meningioma" + "@id": "bts:NGSUniqueTargetCount" }, { - "@id": "bts:Mesothelioma" + "@id": "bts:NGSMatrixType" }, { - "@id": "bts:MultipleMyeloma" + "@id": "bts:SoftwareandVersion" }, { - "@id": "bts:MycosisFungoides" + "@id": "bts:WorkflowType" }, { - "@id": "bts:MyeloidLeukemia" + "@id": "bts:WorkflowParameterDescription" }, { - "@id": "bts:MyeloidNeoplasm" - }, + "@id": "bts:WorkflowLink" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingLevel3Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", + "rdfs:label": "SequencingLevel3Id", + "rdfs:subClassOf": [ { - "@id": "bts:MyeloproliferativeNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel3_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:SequencingLevel2Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel2Key", + "rdfs:subClassOf": [ { - "@id": "bts:Myoepithelioma" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel2 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel2.SequencingLevel2_id Value" + ] + }, + { + "@id": "bts:NGSUniqueProbeCount", + "@type": "rdfs:Class", + "rdfs:comment": "Total number of unique probes reported.", + "rdfs:label": "NGSUniqueProbeCount", + "rdfs:subClassOf": [ { - "@id": "bts:NasopharyngealCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Unique Probe Count", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSUniqueTargetCount", + "@type": "rdfs:Class", + "rdfs:comment": "Total number of unique genes reported.", + "rdfs:label": "NGSUniqueTargetCount", + "rdfs:subClassOf": [ { - "@id": "bts:Neuroblastoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Unique Target Count", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSMatrixType", + "@type": "rdfs:Class", + "rdfs:comment": "Type of count data stored in matrix.", + "rdfs:label": "NGSMatrixType", + "rdfs:subClassOf": [ { - "@id": "bts:NeuroendocrineNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:NeuroepithelialNeoplasm" + "@id": "bts:RawCounts" }, { - "@id": "bts:Neurofibroma" + "@id": "bts:NormalizedCounts" }, { - "@id": "bts:Non-FunctioningPituitaryGlandAdenoma" + "@id": "bts:ScaledCounts" }, { - "@id": "bts:Non-HodgkinLymphoma" - }, + "@id": "bts:BatchCorrectedCounts" + } + ], + "sms:displayName": "NGS Matrix Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:WorkflowType", + "@type": "rdfs:Class", + "rdfs:comment": "Type of computational workflow used to generate the file.", + "rdfs:label": "WorkflowType", + "rdfs:subClassOf": [ { - "@id": "bts:NotApplicable" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Type", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:WorkflowParameterDescription", + "@type": "rdfs:Class", + "rdfs:comment": "Link or text description of flags or options provided to the workflow used to generate the file.", + "rdfs:label": "WorkflowParameterDescription", + "rdfs:subClassOf": [ { - "@id": "bts:OralCavityNeoplasm" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Parameter Description", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:WorkflowLink", + "@type": "rdfs:Class", + "rdfs:comment": "Link to documentation or webpage associated with the computational workflow used to generate the file.", + "rdfs:label": "WorkflowLink", + "rdfs:subClassOf": [ { - "@id": "bts:OralCavitySquamousCellCarcinoma" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Link", + "sms:required": "sms:false", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:RawCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "RawCounts", + "rdfs:subClassOf": [ { - "@id": "bts:OropharyngealNeoplasm" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Raw Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NormalizedCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NormalizedCounts", + "rdfs:subClassOf": [ { - "@id": "bts:Osteosarcoma" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Normalized Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ScaledCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ScaledCounts", + "rdfs:subClassOf": [ { - "@id": "bts:OvarianAdenosarcoma" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Scaled Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BatchCorrectedCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BatchCorrectedCounts", + "rdfs:subClassOf": [ { - "@id": "bts:OvarianCarcinoma" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Batch Corrected Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingRNALevel1", + "@type": "rdfs:Class", + "rdfs:comment": "Unaligned/unprocessed RNA sequencing data", + "rdfs:label": "SequencingRNALevel1", + "rdfs:subClassOf": [ { - "@id": "bts:OvarianNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sequencing RNA Level 1", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:OvarianSerousAdenocarcinoma" - }, + "@id": "bts:SequencingLevel1" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Pan-cancer" + "@id": "bts:Component" }, { - "@id": "bts:PancreaticAdenocarcinoma" + "@id": "bts:SequencingRNALevel1Id" }, { - "@id": "bts:PancreaticCarcinoma" + "@id": "bts:Filename" }, { - "@id": "bts:PancreaticDuctalAdenocarcinoma" + "@id": "bts:NGSRNAEndBias" }, { - "@id": "bts:PancreaticNeoplasm" + "@id": "bts:NGSRNAReverseTranscriptionPrimer" }, { - "@id": "bts:PancreaticNeuroendocrineCarcinoma" + "@id": "bts:NGSRNARIN" }, { - "@id": "bts:PendingAnnotation" - }, + "@id": "bts:NGSRNADV200" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingRNALevel1Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", + "rdfs:label": "SequencingRNALevel1Id", + "rdfs:subClassOf": [ { - "@id": "bts:PenileCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingRNALevel1_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:NGSRNAEndBias", + "@type": "rdfs:Class", + "rdfs:comment": "The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript", + "rdfs:label": "NGSRNAEndBias", + "rdfs:subClassOf": [ { - "@id": "bts:Pheochromocytoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:PilocyticAstrocytoma" + "@id": "bts:3Prime" }, { - "@id": "bts:PituitaryGlandAdenoma" + "@id": "bts:5Prime" }, { - "@id": "bts:PlasmablasticLymphoma" - }, + "@id": "bts:FullLengthTranscript" + } + ], + "sms:displayName": "NGS RNA End Bias", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:NGSRNAReverseTranscriptionPrimer", + "@type": "rdfs:Class", + "rdfs:comment": "An oligo to which new deoxyribonucleotides can be added by DNA polymerase [SO_0000112]. The type of primer used for reverse transcription, e.g. oligo-dT or random primer. This allows users to identify content of the cDNA library input e.g. enriched for mRNA", + "rdfs:label": "NGSRNAReverseTranscriptionPrimer", + "rdfs:subClassOf": [ { - "@id": "bts:Plasmacytoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:PlexiformSchwannoma" + "@id": "bts:Oligo-dT" }, { - "@id": "bts:PrecursorB-celllymphoblasticleukemia" + "@id": "bts:Poly-dT" }, { - "@id": "bts:PrimaryCentralNervousSystemLymphoma" + "@id": "bts:Featurebarcoding" }, { - "@id": "bts:PrimaryMyelofibrosis" - }, + "@id": "bts:Random" + } + ], + "sms:displayName": "NGS RNA Reverse Transcription Primer", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:NGSRNARIN", + "@type": "rdfs:Class", + "rdfs:comment": "A numerical assessment of the integrity of RNA based on the entire electrophoretic trace of the RNA sample including the presence or absence of degradation products. Number", + "rdfs:label": "NGSRNARIN", + "rdfs:subClassOf": [ { - "@id": "bts:ProstateAdenocarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS RNA RIN", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSRNADV200", + "@type": "rdfs:Class", + "rdfs:comment": "Represents the percentage of RNA fragments that are >200 nucleotides in size. Number", + "rdfs:label": "NGSRNADV200", + "rdfs:subClassOf": [ { - "@id": "bts:ProstateCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS RNA DV200", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:3Prime", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "3Prime", + "rdfs:subClassOf": [ { - "@id": "bts:ProstateNeoplasm" - }, + "@id": "bts:NGSRNAEndBias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "3 Prime", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:5Prime", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "5Prime", + "rdfs:subClassOf": [ { - "@id": "bts:RectalAdenocarcinoma" - }, + "@id": "bts:NGSRNAEndBias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "5 Prime", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FullLengthTranscript", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "FullLengthTranscript", + "rdfs:subClassOf": [ { - "@id": "bts:RenalCellCarcinoma" - }, + "@id": "bts:NGSRNAEndBias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Full Length Transcript", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Poly-dT", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Poly-dT", + "rdfs:subClassOf": [ { - "@id": "bts:Retinoblastoma" - }, + "@id": "bts:NGSRNAReverseTranscriptionPrimer" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Poly-dT", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Featurebarcoding", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Featurebarcoding", + "rdfs:subClassOf": [ { - "@id": "bts:Rhabdomyosarcoma" - }, + "@id": "bts:NGSRNAReverseTranscriptionPrimer" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Feature barcoding", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Shared", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Shared", + "rdfs:subClassOf": [ { - "@id": "bts:Rosette-FormingGlioneuronalTumor" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "shared", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProjectViewKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ProjectView_id foreign key(s) that group the resource with other components, as part of the same grant-associated studies. Please provide multiple values as a comma-separated list.", + "rdfs:label": "ProjectViewKey", + "rdfs:subClassOf": [ { - "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma" - }, + "@id": "bts:Project" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ProjectView Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ProjectView.ProjectView_id Value" + ] + }, + { + "@id": "bts:PersonViewKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique PersonView_id foreign key(s) that group the resource with other components, as part of the same person-associated studies. Please provide multiple values as a comma-separated list.", + "rdfs:label": "PersonViewKey", + "rdfs:subClassOf": [ { - "@id": "bts:Sarcoma" - }, + "@id": "bts:Person" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "PersonView Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne PersonView.PersonView_id Value" + ] + }, + { + "@id": "bts:Person", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Person", + "rdfs:subClassOf": [ { - "@id": "bts:Schwannoma" - }, + "@id": "bts:ToolEntityType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Person", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ConsortiumKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique Consortium_id foreign key(s) that group the resource with other components, as part of the same consortium-associated grants. Please provide multiple values as a comma-separated list.", + "rdfs:label": "ConsortiumKey", + "rdfs:subClassOf": [ { - "@id": "bts:SerousTubalIntraepithelialCarcinoma" - }, + "@id": "bts:Consortium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Consortium Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne Consortium.Consortium_id Value" + ] + }, + { + "@id": "bts:Grant", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Grant", + "rdfs:subClassOf": [ { - "@id": "bts:SinonasalSquamousCellCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "grant", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Dataset", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Dataset", + "rdfs:subClassOf": [ { - "@id": "bts:SkinCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "dataset", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Publication", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Publication", + "rdfs:subClassOf": [ { - "@id": "bts:SkinNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "publication", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Tool", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Tool", + "rdfs:subClassOf": [ { - "@id": "bts:SoftTissueSarcoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "tool", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Education", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Education", + "rdfs:subClassOf": [ { - "@id": "bts:SquamousCellCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "education", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DataDSPKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique DataDSP_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.", + "rdfs:label": "DataDSPKey", + "rdfs:subClassOf": [ { - "@id": "bts:SynovialSarcoma" - }, + "@id": "bts:SharingPlans" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataDSP Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne DataDSP.DataDSP_id Value" + ] + }, + { + "@id": "bts:SharingPlans", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SharingPlans", + "rdfs:subClassOf": [ { - "@id": "bts:TAcuteLymphoblasticLeukemia" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "sharingPlans", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FileViewKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique FileView_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "FileViewKey", + "rdfs:subClassOf": [ { - "@id": "bts:T-CellLymphoma" - }, + "@id": "bts:File" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "FileView Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne FileView.FileView_id Value" + ] + }, + { + "@id": "bts:File", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "File", + "rdfs:subClassOf": [ { - "@id": "bts:Teratoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "file", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Geomx", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Geomx", + "rdfs:subClassOf": [ { - "@id": "bts:TesticularEmbryonalCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "geomx", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NanoStringGeoMxDSPImagingKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxDSPImaging_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPImagingKey", + "rdfs:subClassOf": [ { - "@id": "bts:ThyroidGlandAnaplasticCarcinoma" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPImaging Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPImaging.NanoStringGeoMxDSPImaging_id Value" + ] + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel3Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel3Key", + "rdfs:subClassOf": [ { - "@id": "bts:ThyroidGlandCarcinoma" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPLevel3 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPLevel3.NanoStringGeoMxDSPLevel3_id Value" + ] + }, + { + "@id": "bts:ImagingLevel4Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel4Key", + "rdfs:subClassOf": [ { - "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel4 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel4.ImagingLevel4_id Value" + ] + }, + { + "@id": "bts:Sequencing", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Sequencing", + "rdfs:subClassOf": [ { - "@id": "bts:Triple-NegativeBreastCarcinoma" - }, + "@id": "bts:ToolTopic" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sequencing", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingLevel3Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel3Key", + "rdfs:subClassOf": [ { - "@id": "bts:UrothelialCarcinoma" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel3 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel3.SequencingLevel3_id Value" + ] + }, + { + "@id": "bts:SequencingLevel4Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel4Key", + "rdfs:subClassOf": [ { - "@id": "bts:UterineAdenosarcoma" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel4 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel4.SequencingLevel4_id Value" + ] + }, + { + "@id": "bts:SequencingRNALevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingRNALevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:UvealMelanoma" - }, + "@id": "bts:SequencingRNA" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingRNALevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingRNALevel1.SequencingRNALevel1_id Value" + ] + }, + { + "@id": "bts:SequencingRNA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SequencingRNA", + "rdfs:subClassOf": [ { - "@id": "bts:UvealNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "sequencing RNA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:10xVisiumRNALevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:VascularNeoplasm" - }, + "@id": "bts:Visium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumRNALevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumRNALevel1.10xVisiumRNALevel1_id Value" + ] + }, + { + "@id": "bts:Visium", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Visium", + "rdfs:subClassOf": [ { - "@id": "bts:Not-Applicable" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "visium", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:10xVisiumRNALevel2Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumRNALevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel2Key", + "rdfs:subClassOf": [ { - "@id": "bts:PlexiformNeurofibroma" + "@id": "bts:Visium" } ], - "sms:displayName": "DSP Dataset Tumor Type", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumRNALevel2 Key", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "matchAtLeastOne 10xVisiumRNALevel2.10xVisiumRNALevel2_id Value" ] }, { - "@id": "bts:DSPDatasetTissue", + "@id": "bts:10xVisiumRNALevel3Key", "@type": "rdfs:Class", - "rdfs:comment": "Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetTissue", + "rdfs:comment": "Unique 10xVisiumRNALevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel3Key", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:Visium" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Gonad" - }, - { - "@id": "bts:AbdominalEsophagus" - }, - { - "@id": "bts:AdiposeTissue" - }, - { - "@id": "bts:AdrenalGland" - }, - { - "@id": "bts:Alveolus" - }, - { - "@id": "bts:Aorta" - }, - { - "@id": "bts:Artery" - }, - { - "@id": "bts:AscendingColon" - }, - { - "@id": "bts:BileDuct" - }, - { - "@id": "bts:Bladder" - }, - { - "@id": "bts:Blood" - }, - { - "@id": "bts:BloodVessel" - }, - { - "@id": "bts:Bone" - }, - { - "@id": "bts:BoneMarrow" - }, - { - "@id": "bts:Brain" - }, - { - "@id": "bts:Breast" - }, - { - "@id": "bts:Caecum" - }, - { - "@id": "bts:Cancer-AssociatedFibroblast" - }, - { - "@id": "bts:Cardia" - }, - { - "@id": "bts:Cartilage" - }, - { - "@id": "bts:CervixUteri" - }, - { - "@id": "bts:Choroid" - }, - { - "@id": "bts:Colon" - }, - { - "@id": "bts:ConnectiveandSoftTissue" - }, - { - "@id": "bts:Cornea" - }, - { - "@id": "bts:Duodenum" - }, - { - "@id": "bts:Ear" - }, - { - "@id": "bts:Embryo" - }, - { - "@id": "bts:EmbryonicHeart" - }, - { - "@id": "bts:Endocervix" - }, - { - "@id": "bts:Endometrium" - }, - { - "@id": "bts:Endothelium" - }, - { - "@id": "bts:Epithelium" - }, - { - "@id": "bts:Esophagus" - }, - { - "@id": "bts:Eye" - }, - { - "@id": "bts:FallopianTube" - }, - { - "@id": "bts:Foreskin" - }, - { - "@id": "bts:FrontalLobe" - }, - { - "@id": "bts:GastroesophagealJunction" - }, - { - "@id": "bts:GastrointestinalTract" - }, - { - "@id": "bts:Genitourinary" - }, - { - "@id": "bts:HairFollicle" - }, - { - "@id": "bts:HeadandNeck" - }, - { - "@id": "bts:Heart" - }, - { - "@id": "bts:HeartMuscle" - }, - { - "@id": "bts:HematopoieticSystem" - }, - { - "@id": "bts:Hippocampus" - }, - { - "@id": "bts:Intestine" - }, - { - "@id": "bts:Intra-AbdominalLymphNodes" - }, - { - "@id": "bts:IntrathoracicLymphNodes" - }, - { - "@id": "bts:Joint" - }, - { - "@id": "bts:Kidney" - }, - { - "@id": "bts:Larynx" - }, - { - "@id": "bts:Ligament" - }, - { - "@id": "bts:Liver" - }, - { - "@id": "bts:Lung" - }, - { - "@id": "bts:Lymph" - }, - { - "@id": "bts:LymphNode" - }, - { - "@id": "bts:LymphNodesofAxillaorArm" - }, - { - "@id": "bts:LymphNodesofInguinalRegionorLeg" - }, - { - "@id": "bts:LymphaticSystem" - }, - { - "@id": "bts:LymphoidTissue" - }, - { - "@id": "bts:MainBronchus" - }, - { - "@id": "bts:MammaryGland" - }, - { - "@id": "bts:Meninges" - }, - { - "@id": "bts:Mesenchyme" - }, - { - "@id": "bts:Mucosa" - }, - { - "@id": "bts:Muscle" - }, - { - "@id": "bts:NasalCavity" - }, - { - "@id": "bts:NervousSystem" - }, - { - "@id": "bts:NotApplicable" - }, - { - "@id": "bts:OlfactoryMucosa" - }, - { - "@id": "bts:Omentum" - }, - { - "@id": "bts:OralCavity" - }, - { - "@id": "bts:OralMucosa" - }, - { - "@id": "bts:Ovary" - }, - { - "@id": "bts:Pancreas" - }, - { - "@id": "bts:PelvicLymphNodes" - }, + "sms:displayName": "10xVisiumRNALevel3 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumRNALevel3.10xVisiumRNALevel3_id Value" + ] + }, + { + "@id": "bts:10xVisiumRNALevel4Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumRNALevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel4Key", + "rdfs:subClassOf": [ { - "@id": "bts:PendingAnnotation" - }, + "@id": "bts:Visium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumRNALevel4 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumRNALevel4.10xVisiumRNALevel4_id Value" + ] + }, + { + "@id": "bts:10xVisiumAuxiliaryFilesKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumAuxiliaryFilesKey", + "rdfs:subClassOf": [ { - "@id": "bts:PeriodontalLigament" - }, + "@id": "bts:Visium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumAuxiliaryFiles Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumAuxiliaryFiles.10xVisiumAuxiliaryFiles_id Value" + ] + }, + { + "@id": "bts:WorkflowVersion", + "@type": "rdfs:Class", + "rdfs:comment": "Major version of the workflow (e.g. Cell Ranger v3.1)", + "rdfs:label": "WorkflowVersion", + "rdfs:subClassOf": [ { - "@id": "bts:PeripheralNerves" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Version", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:GenomicReferenceURL", + "@type": "rdfs:Class", + "rdfs:comment": "Link to human genome sequence; ftp or reference URL will be accepted.", + "rdfs:label": "GenomicReferenceURL", + "rdfs:subClassOf": [ { - "@id": "bts:Peritoneum" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genomic Reference URL", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:GenomeAnnotationURL", + "@type": "rdfs:Class", + "rdfs:comment": "Link to the human genome annotation (GTF) file; ftp or reference URL will be accepted.", + "rdfs:label": "GenomeAnnotationURL", + "rdfs:subClassOf": [ { - "@id": "bts:Pharynx" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genome Annotation URL", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:DataDSP", + "@type": "rdfs:Class", + "rdfs:comment": "Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.", + "rdfs:label": "DataDSP", + "rdfs:subClassOf": [ { - "@id": "bts:PituitaryGland" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataDSP", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:Placenta" - }, + "@id": "bts:Study" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Pleura" + "@id": "bts:Component" }, { - "@id": "bts:ProstateGland" + "@id": "bts:DataDSPId" }, { - "@id": "bts:Rectum" + "@id": "bts:GrantViewKey" }, { - "@id": "bts:ReproductiveSystem" + "@id": "bts:StudyKey" }, { - "@id": "bts:RespiratorySystem" + "@id": "bts:DatasetViewKey" }, { - "@id": "bts:SalivaryGland" + "@id": "bts:DSPDatasetAlias" }, { - "@id": "bts:Sclera" + "@id": "bts:DSPDatasetName" }, { - "@id": "bts:SinonasalTract" + "@id": "bts:DSPDatasetUrl" }, { - "@id": "bts:Skin" + "@id": "bts:DSPDatasetAssay" }, { - "@id": "bts:SmallIntestine" + "@id": "bts:DSPDatasetLevel" }, { - "@id": "bts:SpinalCord" + "@id": "bts:DSPDatasetSpecies" }, { - "@id": "bts:Spleen" + "@id": "bts:DSPDatasetTumorType" }, { - "@id": "bts:Stomach" + "@id": "bts:DSPDatasetTissue" }, { - "@id": "bts:SynovialMembrane" + "@id": "bts:DSPDatasetFileFormats" }, { - "@id": "bts:Tendon" + "@id": "bts:DSPNumberofFiles" }, { - "@id": "bts:Testis" + "@id": "bts:DSPNumberofSamples" }, { - "@id": "bts:Thymus" + "@id": "bts:DSPNumberofParticipants" }, { - "@id": "bts:ThyroidGland" + "@id": "bts:DSPStorageSize" }, { - "@id": "bts:Tongue" + "@id": "bts:DSPDatasetDescription" }, { - "@id": "bts:Tonsil" + "@id": "bts:DSPPlannedUploadDate" }, { - "@id": "bts:Trachea" + "@id": "bts:DSPPlannedReleaseDate" }, { - "@id": "bts:UmbilicalCord" + "@id": "bts:DSPDataUseCodes" }, { - "@id": "bts:Unspecified" + "@id": "bts:DSPIRBForm" }, { - "@id": "bts:Uterus" + "@id": "bts:DSPDatasetDestination" }, { - "@id": "bts:Vagina" - }, + "@id": "bts:DSPDatasetMetadata" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:DataDSPId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "DataDSPId", + "rdfs:subClassOf": [ { - "@id": "bts:VascularEndothelium" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataDSP_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:DSPDatasetAlias", + "@type": "rdfs:Class", + "rdfs:comment": "Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.", + "rdfs:label": "DSPDatasetAlias", + "rdfs:subClassOf": [ { - "@id": "bts:Vein" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DSP Dataset Alias", + "sms:required": "sms:false", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:DSPDatasetName", + "@type": "rdfs:Class", + "rdfs:comment": "Name of the dataset", + "rdfs:label": "DSPDatasetName", + "rdfs:subClassOf": [ { - "@id": "bts:Vertebra" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DSP Dataset Name", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:DSPDatasetUrl", + "@type": "rdfs:Class", + "rdfs:comment": "The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.", + "rdfs:label": "DSPDatasetUrl", + "rdfs:subClassOf": [ { - "@id": "bts:PeripheralBloodMononuclearCell" + "@id": "bts:Thing" } ], - "sms:displayName": "DSP Dataset Tissue", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DSP Dataset Url", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "url" ] }, { - "@id": "bts:DSPDatasetFileFormats", + "@id": "bts:DSPDatasetAssay", "@type": "rdfs:Class", - "rdfs:comment": "A list of file formats associated with the dataset. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetFileFormats", + "rdfs:comment": "The type of data contained in this group of files. Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetAssay", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -315948,6465 +322347,4587 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:AVI" - }, - { - "@id": "bts:BAI" - }, - { - "@id": "bts:BAM" - }, - { - "@id": "bts:BED" - }, - { - "@id": "bts:CDS" - }, - { - "@id": "bts:CHP" - }, - { - "@id": "bts:COOL" - }, - { - "@id": "bts:CSV" - }, - { - "@id": "bts:DAE" - }, - { - "@id": "bts:DB" - }, - { - "@id": "bts:DSStore" - }, - { - "@id": "bts:FASTA" - }, - { - "@id": "bts:FASTQ" - }, - { - "@id": "bts:FCS" - }, - { - "@id": "bts:FIG" - }, - { - "@id": "bts:FREQ" + "@id": "bts:10-cellRNASequencing" }, { - "@id": "bts:GCG" + "@id": "bts:16SRibosomalGeneSequencingAssay" }, { - "@id": "bts:GCT" + "@id": "bts:3'RNA-seq" }, { - "@id": "bts:GCTx" + "@id": "bts:3C" }, { - "@id": "bts:GFF3" + "@id": "bts:3C-qPCR" }, { - "@id": "bts:GTF" + "@id": "bts:3DATAC-PALM" }, { - "@id": "bts:GZIPFormat" + "@id": "bts:3DBioprinting" }, { - "@id": "bts:HDF" + "@id": "bts:3DCellCulture" }, { - "@id": "bts:HDF5" + "@id": "bts:4C" }, { - "@id": "bts:HTML" + "@id": "bts:5C" }, { - "@id": "bts:IDAT" + "@id": "bts:ATAC-Seq" }, { - "@id": "bts:JPG" + "@id": "bts:ATPBioluminescenceAssay" }, { - "@id": "bts:JSON" + "@id": "bts:AffinityPurificationMassSpectrometry" }, { - "@id": "bts:LIF" + "@id": "bts:Allograft" }, { - "@id": "bts:MAP" + "@id": "bts:AmpliconSequencing" }, { - "@id": "bts:MAT" + "@id": "bts:AngiogenesisAssay" }, { - "@id": "bts:MATLABscript" + "@id": "bts:ApoptosisAssay" }, { - "@id": "bts:MSF" + "@id": "bts:AtomicAbsorptionSpectrophotometry" }, { - "@id": "bts:MTX" + "@id": "bts:AtomicAbsorptionSpectroscopy" }, { - "@id": "bts:PDF" + "@id": "bts:AtomicForceMicroscopy" }, { - "@id": "bts:PNG" + "@id": "bts:Autoradiography" }, { - "@id": "bts:PZFX" + "@id": "bts:Barcode-Seq" }, { - "@id": "bts:PythonScript" + "@id": "bts:BicinchoninicAcidAssay" }, { - "@id": "bts:RFileFormat" + "@id": "bts:BindingAssay" }, { - "@id": "bts:RAW" + "@id": "bts:Bio-LayerInterferometry" }, { - "@id": "bts:RDS" + "@id": "bts:BioluminescenceImaging" }, { - "@id": "bts:ROUT" + "@id": "bts:BisulfiteSequencing" }, { - "@id": "bts:RPROJ" + "@id": "bts:BrightfieldMicroscopy" }, { - "@id": "bts:RTF" + "@id": "bts:BrillouinMicroscopy" }, { - "@id": "bts:SGI" + "@id": "bts:CASFISH" }, { - "@id": "bts:SRA" + "@id": "bts:CITE-seq" }, { - "@id": "bts:STAT" + "@id": "bts:CLIP-qPCR" }, { - "@id": "bts:TARFormat" + "@id": "bts:CRISPR" }, { - "@id": "bts:TDF" + "@id": "bts:CUT&RUN" }, { - "@id": "bts:TIFF" + "@id": "bts:CUT&Tag-Sequencing" }, { - "@id": "bts:TSV" + "@id": "bts:CellAdhesionAssay" }, { - "@id": "bts:TXT" + "@id": "bts:CellProliferationAssay" }, { - "@id": "bts:VCF" + "@id": "bts:CellViabilityAssay" }, { - "@id": "bts:WIG" + "@id": "bts:Cell-spreadingAssay" }, { - "@id": "bts:XML" + "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay" }, { - "@id": "bts:ZIP" + "@id": "bts:CerenkovLuminescenceImaging" }, { - "@id": "bts:Bed12" + "@id": "bts:ChIA-PET" }, { - "@id": "bts:Bedgraph" + "@id": "bts:ChIP-PCR" }, { - "@id": "bts:Cel" + "@id": "bts:ChIP-Seq" }, { - "@id": "bts:Cloupe" + "@id": "bts:ChIP-qPCRassay" }, { - "@id": "bts:Docx" + "@id": "bts:ChemiluminescentAssay" }, { - "@id": "bts:MzIdentML" + "@id": "bts:ChemotaxisAssay" }, { - "@id": "bts:MzXML" + "@id": "bts:CircularDichroismSpectroscopy" }, { - "@id": "bts:Pptx" + "@id": "bts:Co-Immunoprecipitation" }, { - "@id": "bts:Rcc" + "@id": "bts:Co-cultureAssay" }, { - "@id": "bts:Xls" + "@id": "bts:Collision-InducedDissociation" }, { - "@id": "bts:Xlsx" + "@id": "bts:ColorimetricCellViabilityAssay" }, { - "@id": "bts:MGF" + "@id": "bts:ComputationalModeling" }, { - "@id": "bts:BIGWIG" + "@id": "bts:ComputationalTool" }, { - "@id": "bts:H5AD" + "@id": "bts:ComputedTomography" }, { - "@id": "bts:H5" + "@id": "bts:ConfocalMicroscopy" }, { - "@id": "bts:SF" + "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy" }, { - "@id": "bts:PKL" + "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing" }, { - "@id": "bts:BPM" + "@id": "bts:Cross-LinkingMassSpectrometry" }, { - "@id": "bts:Unspecified" + "@id": "bts:CyclicImmunofluorescence" }, { - "@id": "bts:PendingAnnotation" + "@id": "bts:CytochemicalStain" }, { - "@id": "bts:Maf" + "@id": "bts:CytokineExpressionProfile" }, { - "@id": "bts:CLS" + "@id": "bts:CytometricBeadArrayAssay" }, { - "@id": "bts:SCN" + "@id": "bts:CytotoxicityAssay" }, { - "@id": "bts:SVS" - } - ], - "sms:displayName": "DSP Dataset File Formats", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:DSPNumberofFiles", - "@type": "rdfs:Class", - "rdfs:comment": "The number of files that will be uploaded as part of this dataset.", - "rdfs:label": "DSPNumberofFiles", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Number of Files", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPNumberofSamples", - "@type": "rdfs:Class", - "rdfs:comment": "The number of biospecimens associated with the files included in the dataset", - "rdfs:label": "DSPNumberofSamples", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Number of Samples", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPNumberofParticipants", - "@type": "rdfs:Class", - "rdfs:comment": "The number of individuals or model organisms from which samples were collected to generate the dataset.", - "rdfs:label": "DSPNumberofParticipants", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Number of Participants", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPStorageSize", - "@type": "rdfs:Class", - "rdfs:comment": "The expected total storage space required for the dataset in gigabytes (GB)", - "rdfs:label": "DSPStorageSize", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Storage Size", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPDatasetDescription", - "@type": "rdfs:Class", - "rdfs:comment": "A text description of the files contained in this dataset.", - "rdfs:label": "DSPDatasetDescription", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:DSPPlannedUploadDate", - "@type": "rdfs:Class", - "rdfs:comment": "A non-binding, estimated date by which the files are expected to be uploaded to a repository.", - "rdfs:label": "DSPPlannedUploadDate", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Planned Upload Date", - "sms:required": "sms:true", - "sms:validationRules": [ - "date" - ] - }, - { - "@id": "bts:DSPPlannedReleaseDate", - "@type": "rdfs:Class", - "rdfs:comment": "The projected date that marks the end of any requested or required sharing embargo for the dataset.", - "rdfs:label": "DSPPlannedReleaseDate", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Planned Release Date", - "sms:required": "sms:false", - "sms:validationRules": [ - "date" - ] - }, - { - "@id": "bts:DSPDataUseCodes", - "@type": "rdfs:Class", - "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", - "rdfs:label": "DSPDataUseCodes", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:IRB" + "@id": "bts:DBiT-Seq" }, { - "@id": "bts:HMB" + "@id": "bts:DNAGene-ExpressionMicroarray" }, { - "@id": "bts:PUB" + "@id": "bts:DNAMethylationArray" }, { - "@id": "bts:US" + "@id": "bts:DNASequencing" }, { - "@id": "bts:NPOA" + "@id": "bts:DNase-Seq" }, { - "@id": "bts:COL" + "@id": "bts:DRIP-seq" }, { - "@id": "bts:NCU" + "@id": "bts:DarkFieldMicroscopy" }, { - "@id": "bts:NPUNCU" + "@id": "bts:DeepMutationalScanning" }, { - "@id": "bts:RS" + "@id": "bts:DesorptionElectrosprayIonization" }, { - "@id": "bts:TS" + "@id": "bts:DideoxyChainTerminationDNASequencing" }, { - "@id": "bts:NRES" + "@id": "bts:DifferentialInterferenceContrastMicroscopy" }, { - "@id": "bts:NPU" + "@id": "bts:DifferentialScanningFluorimetry" }, { - "@id": "bts:DUM" + "@id": "bts:DiffusionWeightedImaging" }, { - "@id": "bts:POA" + "@id": "bts:DirectLong-ReadRNASequencing" }, { - "@id": "bts:MOR" + "@id": "bts:Drop-Seq" }, { - "@id": "bts:GSO" + "@id": "bts:DropletDigitalPCR" }, { - "@id": "bts:RTN" + "@id": "bts:Dual-LuciferaseReporterAssay" }, { - "@id": "bts:CC" + "@id": "bts:DyeEndocytosisAssay" }, { - "@id": "bts:NMDS" + "@id": "bts:DynamicContrast-EnhancedMagneticResonanceImaging" }, { - "@id": "bts:IS" + "@id": "bts:DynamicForceSpectroscopy" }, { - "@id": "bts:GS" + "@id": "bts:DynamicLightScattering" }, { - "@id": "bts:DS" + "@id": "bts:DynamicSusceptibilityContrast-EnhancedMagneticResonanceImaging" }, { - "@id": "bts:GRU" + "@id": "bts:ELISA" }, { - "@id": "bts:PS" - } - ], - "sms:displayName": "DSP Data Use Codes", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:DSPIRBForm", - "@type": "rdfs:Class", - "rdfs:comment": "The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset", - "rdfs:label": "DSPIRBForm", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP IRB Form", - "sms:required": "sms:false", - "sms:validationRules": [ - "regex match syn\\d+" - ] - }, - { - "@id": "bts:DSPDatasetDestination", - "@type": "rdfs:Class", - "rdfs:comment": "An identifier representing the repository in which this dataset is intended to be held for long term preservation.", - "rdfs:label": "DSPDatasetDestination", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Destination", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:DSPDatasetMetadata", - "@type": "rdfs:Class", - "rdfs:comment": "The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.", - "rdfs:label": "DSPDatasetMetadata", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Metadata", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:DSPDatasetGrantNumber", - "@type": "rdfs:Class", - "rdfs:comment": "Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetGrantNumber", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Affiliated/Non-GrantAssociated" + "@id": "bts:EfferocytosisAssay" }, { - "@id": "bts:CA184897" + "@id": "bts:ElectronDiffraction" }, { - "@id": "bts:CA184898" + "@id": "bts:ElectronMicroscopy" }, { - "@id": "bts:CA188388" + "@id": "bts:ElectronParamagneticResonanceSpectroscopy" }, { - "@id": "bts:CA193313" + "@id": "bts:ElectrophoreticMobilityShiftAssay" }, { - "@id": "bts:CA193417" + "@id": "bts:ElectrosprayIonizationTime-of-FlightMassSpectrometry" }, { - "@id": "bts:CA193419" + "@id": "bts:EndotoxinAssay" }, { - "@id": "bts:CA193461" + "@id": "bts:Energy-DispersiveX-RaySpectroscopy" }, { - "@id": "bts:CA193489" + "@id": "bts:EnzymeActivityAssay" }, { - "@id": "bts:CA195469" + "@id": "bts:Enzyme-LinkedImmunospotAssay" }, { - "@id": "bts:CA199315" + "@id": "bts:EpidemiologicalMethod" }, { - "@id": "bts:CA202123" + "@id": "bts:FAIRE-Seq" }, { - "@id": "bts:CA202144" + "@id": "bts:FISH" }, { - "@id": "bts:CA202177" + "@id": "bts:FlowCytometry" }, { - "@id": "bts:CA202229" + "@id": "bts:FluorescenceActivatedCellSorting" }, { - "@id": "bts:CA202241" + "@id": "bts:FluorescenceCorrelationSpectroscopy" }, { - "@id": "bts:CA209891" + "@id": "bts:FluorescenceImaging" }, { - "@id": "bts:CA209923" + "@id": "bts:FluorescenceLifetimeImagingMicroscopy" }, { - "@id": "bts:CA209971" + "@id": "bts:FluorescenceMicroscopy" }, { - "@id": "bts:CA209975" + "@id": "bts:FluorescenceRecoveryAfterPhoto-Bleaching" }, { - "@id": "bts:CA209978" + "@id": "bts:FluorescentAntibodyProcedure" }, { - "@id": "bts:CA209988" + "@id": "bts:FluorescentCellBarcoding" }, { - "@id": "bts:CA209992" + "@id": "bts:FluorescentInSituSequencing" }, { - "@id": "bts:CA209997" + "@id": "bts:FocusedIonBeamScanningElectronMicroscopy" }, { - "@id": "bts:CA210152" + "@id": "bts:ForsterResonanceEnergyTransfer" }, { - "@id": "bts:CA210173" + "@id": "bts:FourierTransformIonCyclotronResonanceMassSpectrometry" }, { - "@id": "bts:CA210180" + "@id": "bts:Fourier-TransformInfraredSpectroscopy" }, { - "@id": "bts:CA210181" + "@id": "bts:GasChromatographyMassSpectrometry" }, { - "@id": "bts:CA210184" + "@id": "bts:GelatinZymography" }, { - "@id": "bts:CA210190" + "@id": "bts:Genotyping" }, { - "@id": "bts:CA214282" + "@id": "bts:GlobalChromatinProfiling" }, { - "@id": "bts:CA214292" + "@id": "bts:GlobalRun-OnSequencing" }, { - "@id": "bts:CA214297" + "@id": "bts:GraphiteFurnaceAtomicAbsorptionSpectrometry" }, { - "@id": "bts:CA214300" + "@id": "bts:HL-Chip" }, { - "@id": "bts:CA214354" + "@id": "bts:HPLC-MSMS" }, { - "@id": "bts:CA214369" + "@id": "bts:HematoxylinandEosinStainingMethod" }, { - "@id": "bts:CA214381" + "@id": "bts:Hi-C" }, { - "@id": "bts:CA214411" + "@id": "bts:HiChIP" }, { - "@id": "bts:CA215709" + "@id": "bts:HighThroughputScreening" }, { - "@id": "bts:CA215794" + "@id": "bts:High-ContentScreen" }, { - "@id": "bts:CA215798" + "@id": "bts:Hydrogels" }, { - "@id": "bts:CA215845" + "@id": "bts:HydrophilicInteractionChromatography" }, { - "@id": "bts:CA215848" + "@id": "bts:ImageCytometry" }, { - "@id": "bts:CA217297" + "@id": "bts:Imaging" }, { - "@id": "bts:CA217376" + "@id": "bts:ImmobilizedMetalAffinityChromatography" }, { - "@id": "bts:CA217377" + "@id": "bts:ImmunoFISH" }, { - "@id": "bts:CA217378" + "@id": "bts:Immunoassay" }, { - "@id": "bts:CA217450" + "@id": "bts:Immunocytochemistry" }, { - "@id": "bts:CA217456" + "@id": "bts:ImmunohistochemistryStainingMethod" }, { - "@id": "bts:CA217514" + "@id": "bts:Immunoprecipitation" }, { - "@id": "bts:CA217613" + "@id": "bts:InSituHybridization" }, { - "@id": "bts:CA217617" + "@id": "bts:InVitroCellKillingAssay" }, { - "@id": "bts:CA217655" + "@id": "bts:InVitroModel" }, { - "@id": "bts:CA220378" + "@id": "bts:InVitroSelection" }, { - "@id": "bts:CA223976" + "@id": "bts:InVitroTranslation" }, { - "@id": "bts:CA224012" + "@id": "bts:InVivoBioluminescence" }, { - "@id": "bts:CA224013" + "@id": "bts:In-CellWesternAssay" }, { - "@id": "bts:CA224044" + "@id": "bts:Inductively-CoupledPlasmaMassSpectrometry" }, { - "@id": "bts:CA225088" + "@id": "bts:InterferenceReflectionMicroscopy" }, { - "@id": "bts:CA225566" + "@id": "bts:IntravitalMicroscopy" }, { - "@id": "bts:CA227136" + "@id": "bts:InvasionAssay" }, { - "@id": "bts:CA227544" + "@id": "bts:Karyotyping" }, { - "@id": "bts:CA227550" + "@id": "bts:Knife-EdgeScanningMicroscopy" }, { - "@id": "bts:CA228608" + "@id": "bts:L1000mRNAProfilingAssay" }, { - "@id": "bts:CA228963" + "@id": "bts:LatticeLightSheetMicroscopy" }, { - "@id": "bts:CA231978" + "@id": "bts:LiquidChromatographyMassSpectrometry" }, { - "@id": "bts:CA232137" + "@id": "bts:LiquidChromatography/TandemMassSpectrometry" }, { - "@id": "bts:CA232161" + "@id": "bts:Low-VacuumScanningElectronMicroscopy" }, { - "@id": "bts:CA232209" + "@id": "bts:LuciferaseReporterAssay" }, { - "@id": "bts:CA232216" + "@id": "bts:LuminescentCellViabilityAssay" }, { - "@id": "bts:CA232382" + "@id": "bts:MALDI-TOFMassSpectrometry" }, { - "@id": "bts:CA232517" + "@id": "bts:MEMACellGrowthAssay" }, { - "@id": "bts:CA234787" + "@id": "bts:MNase-Seq" }, { - "@id": "bts:CA235747" + "@id": "bts:MULTI-Seq" }, { - "@id": "bts:CA238475" + "@id": "bts:MacrophagePolarizationAssay" }, { - "@id": "bts:CA238720" + "@id": "bts:MagneticResonanceImaging" }, { - "@id": "bts:CA238728" + "@id": "bts:MagneticTweezers" }, { - "@id": "bts:CA240301" + "@id": "bts:MagneticTwistingCytometry" }, { - "@id": "bts:CA241137" + "@id": "bts:MagneticallyActivatedCellSorting" }, { - "@id": "bts:CA241927" + "@id": "bts:MammosphereFormationAssay" }, { - "@id": "bts:CA243004" + "@id": "bts:MassCytometry" }, { - "@id": "bts:CA243007" + "@id": "bts:MassSpectrometry" }, { - "@id": "bts:CA243072" + "@id": "bts:MathematicalModeling" }, { - "@id": "bts:CA243073" + "@id": "bts:MeDIP" }, { - "@id": "bts:CA243075" + "@id": "bts:MeRIP-Seq" }, { - "@id": "bts:CA244100" + "@id": "bts:MethylBindingDomainSequencing" }, { - "@id": "bts:CA244101" + "@id": "bts:Methylation-SpecificPCR" }, { - "@id": "bts:CA244107" + "@id": "bts:Micro-computedTomography" }, { - "@id": "bts:CA244109" + "@id": "bts:MicroRNAExpressionArray" }, { - "@id": "bts:CA245313" + "@id": "bts:MicroRNASequencing" }, { - "@id": "bts:CA248890" + "@id": "bts:MicrocontactPrinting" }, { - "@id": "bts:CA249799" + "@id": "bts:Microfluidics" }, { - "@id": "bts:CA250040" + "@id": "bts:MicropipetteAdhesionAssay" }, { - "@id": "bts:CA250044" + "@id": "bts:MicropipetteAspiration" }, { - "@id": "bts:CA250046" + "@id": "bts:Microscopy" }, { - "@id": "bts:CA250481" + "@id": "bts:MigrationAssay" }, { - "@id": "bts:CA251443" + "@id": "bts:Mint-ChIP" }, { - "@id": "bts:CA253248" + "@id": "bts:Modeling" }, { - "@id": "bts:CA253472" + "@id": "bts:MolecularSimulations" }, { - "@id": "bts:CA253540" + "@id": "bts:MonolayerStressMicroscopy" }, { - "@id": "bts:CA253547" + "@id": "bts:Multi-AngleLightScattering" }, { - "@id": "bts:CA253553" + "@id": "bts:Multi-IsotopeMassSpectrometry" }, { - "@id": "bts:CA254200" + "@id": "bts:MultiparametricMagneticResonanceImaging" }, { - "@id": "bts:CA254886" + "@id": "bts:MultiphotonMicroscopy" }, { - "@id": "bts:CA256054" + "@id": "bts:MultiplexedError-RobustFluorescenceInSituHybridization" }, { - "@id": "bts:CA256481" + "@id": "bts:MultiplexedImmunofluorescence" }, { - "@id": "bts:CA260432" + "@id": "bts:MultiplexedImmunohistochemistry" }, { - "@id": "bts:CA261694" + "@id": "bts:MultiplexedIonBeamImaging" }, { - "@id": "bts:CA261701" + "@id": "bts:MurineModel" }, { - "@id": "bts:CA261717" + "@id": "bts:Nano-hmC-Seal" }, { - "@id": "bts:CA261719" + "@id": "bts:NanoStringDigitalSpatialProfiling" }, { - "@id": "bts:CA261822" + "@id": "bts:Nanopatterning" }, { - "@id": "bts:CA261841" + "@id": "bts:NanoporeSequencing" }, { - "@id": "bts:CA261842" + "@id": "bts:Nanowire" }, { - "@id": "bts:CA263001" + "@id": "bts:NestedPCR" }, { - "@id": "bts:CA264583" + "@id": "bts:NextGenerationSequencing" }, { - "@id": "bts:CA264610" + "@id": "bts:Nm-seq" }, { - "@id": "bts:CA264611" + "@id": "bts:NotApplicable" }, { - "@id": "bts:CA264620" + "@id": "bts:NuclearMagneticResonance" }, { - "@id": "bts:CA267170" + "@id": "bts:OpticalCoherenceTomography" }, { - "@id": "bts:CA268069" + "@id": "bts:OpticalEmissionSpectroscopy" }, { - "@id": "bts:CA268072" + "@id": "bts:OpticalMapping" }, { - "@id": "bts:CA268083" + "@id": "bts:OpticalStretcher" }, { - "@id": "bts:CA268084" + "@id": "bts:OpticalTweezers" }, { - "@id": "bts:CA271273" + "@id": "bts:OptogeneticAssay" }, { - "@id": "bts:CA274492" + "@id": "bts:Organoid" }, { - "@id": "bts:CA274494" + "@id": "bts:PCR" }, { - "@id": "bts:CA274499" + "@id": "bts:PET-CT" }, { - "@id": "bts:CA274502" + "@id": "bts:ParaquatSurvivalAssay" }, { - "@id": "bts:CA274509" + "@id": "bts:PartialWaveSpectroscopy" }, { - "@id": "bts:CA275808" + "@id": "bts:PatientDerivedXenograft" }, { - "@id": "bts:CA279408" + "@id": "bts:PendingAnnotation" }, { - "@id": "bts:CA279560" + "@id": "bts:PermeabilityAssay" }, { - "@id": "bts:CA280984" + "@id": "bts:PhagocytosisAssay" }, { - "@id": "bts:CA280849" + "@id": "bts:PhotoacousticImaging" }, { - "@id": "bts:CA280829" + "@id": "bts:Photolithography" }, { - "@id": "bts:CA284090" + "@id": "bts:PlasmidConstruction" }, { - "@id": "bts:CA284086" + "@id": "bts:PlateSeq" }, { - "@id": "bts:CA274504" + "@id": "bts:PointAccumulationforImaginginNanoscaleTopography" }, { - "@id": "bts:CA283114" + "@id": "bts:PositronEmissionTomography" }, { - "@id": "bts:CA274507" + "@id": "bts:PrecisionRun-OnSequencing" }, { - "@id": "bts:CA274506" + "@id": "bts:ProteomicsAssay" }, { - "@id": "bts:CA274511" + "@id": "bts:ProximityLigationAssay" }, { - "@id": "bts:CA282451" + "@id": "bts:Pull-DownAssay" }, { - "@id": "bts:CA284085" + "@id": "bts:QFISH" }, { - "@id": "bts:CA283749" + "@id": "bts:QuantitativeMultiplexImmunofluorescence" }, { - "@id": "bts:CA289564" + "@id": "bts:QuantitativePointAccumulationforImaginginNanoscaleTopography" }, { - "@id": "bts:CA293470" + "@id": "bts:Questionnaire" }, { - "@id": "bts:CA279722" + "@id": "bts:RASProteinFamilyActivationAssay" }, { - "@id": "bts:CA290115" + "@id": "bts:RIP" }, { - "@id": "bts:CA279948" + "@id": "bts:RIP-Seq" }, { - "@id": "bts:CA281216" + "@id": "bts:RNASequencing" }, { - "@id": "bts:CA292382" + "@id": "bts:RNAiScreen" }, { - "@id": "bts:CA290442" + "@id": "bts:RT-PCR" }, { - "@id": "bts:CA293853" - } - ], - "sms:displayName": "DSP Dataset Grant Number", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:StudyId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "StudyId", - "rdfs:subClassOf": [ + "@id": "bts:RT-qPCR" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:StudydbGaPAccessionId", - "@type": "rdfs:Class", - "rdfs:comment": "A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.", - "rdfs:label": "StudydbGaPAccessionId", - "rdfs:subClassOf": [ + "@id": "bts:RamanSpectroscopy" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study dbGaP Accession Id", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of the study", - "rdfs:label": "StudyName", - "rdfs:subClassOf": [ + "@id": "bts:ReducedRepresentationBisulfiteSequencing" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.", - "rdfs:label": "StudyDescription", - "rdfs:subClassOf": [ + "@id": "bts:ReversePhaseProteinArray" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Description", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyInvestigator", - "@type": "rdfs:Class", - "rdfs:comment": "Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.", - "rdfs:label": "StudyInvestigator", - "rdfs:subClassOf": [ + "@id": "bts:Reverse-PhaseHigh-PerformanceliquidChromatography" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Investigator", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:StudyNumberofParticipants", - "@type": "rdfs:Class", - "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.", - "rdfs:label": "StudyNumberofParticipants", - "rdfs:subClassOf": [ + "@id": "bts:Rheometry" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Number of Participants", - "sms:required": "sms:true", - "sms:validationRules": [ - "int" - ] - }, - { - "@id": "bts:StudyDe-identificationMethodType", - "@type": "rdfs:Class", - "rdfs:comment": "General description of the de-identification method. Maps to DUOplus3.", - "rdfs:label": "StudyDe-identificationMethodType", - "rdfs:subClassOf": [ + "@id": "bts:Ribo-Seq" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:RibosomalPProteinAntibodyMeasurement" + }, { - "@id": "bts:Manual" + "@id": "bts:ScanningAngleInterferenceMicroscopy" }, { - "@id": "bts:Semiautomatic" + "@id": "bts:ScanningElectronMicroscopy" }, { - "@id": "bts:Automatic" + "@id": "bts:Second-HarmonicImagingMicroscopy" }, { - "@id": "bts:NotApplicable" - } - ], - "sms:displayName": "Study De-identification Method Type", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:StudyDe-identificationMethodDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.", - "rdfs:label": "StudyDe-identificationMethodDescription", - "rdfs:subClassOf": [ + "@id": "bts:ShotgunMassSpectrometry" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study De-identification Method Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyDe-identificationMethodSoftware", - "@type": "rdfs:Class", - "rdfs:comment": "Software that was used to de-identify the data (if used)", - "rdfs:label": "StudyDe-identificationMethodSoftware", - "rdfs:subClassOf": [ + "@id": "bts:SingleCellATAC-Seq" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study De-identification Method Software", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyIndexDate", - "@type": "rdfs:Class", - "rdfs:comment": "The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.", - "rdfs:label": "StudyIndexDate", - "rdfs:subClassOf": [ + "@id": "bts:SingleCellCytokineDetectionChipAssay" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:SingleCellDNASequencing" + }, { - "@id": "bts:DiagnosisDate" + "@id": "bts:SingleCellGelElectrophoresis" }, { - "@id": "bts:EnrollmentDate" + "@id": "bts:SingleCellRNA-Sequencing" }, { - "@id": "bts:CollectionDate" + "@id": "bts:SingleMoleculeForsterResonanceEnergyTransfer" }, { - "@id": "bts:BirthDate" - } - ], - "sms:displayName": "Study Index Date", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StudyReuseStatement", - "@type": "rdfs:Class", - "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.", - "rdfs:label": "StudyReuseStatement", - "rdfs:subClassOf": [ + "@id": "bts:SingleNucleotidePolymorphismArray" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Reuse Statement", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyDataUseCodes", - "@type": "rdfs:Class", - "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", - "rdfs:label": "StudyDataUseCodes", - "rdfs:subClassOf": [ + "@id": "bts:SingleNucleusRNA-Sequencing" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Single-CellBCRSequencing" + }, { - "@id": "bts:IRB" + "@id": "bts:Single-CellBarcodeChip" }, { - "@id": "bts:HMB" + "@id": "bts:Single-CellTCRSequencing" }, { - "@id": "bts:PUB" + "@id": "bts:Single-MoleculeTracking" }, { - "@id": "bts:US" + "@id": "bts:SiriusRedStaining" }, { - "@id": "bts:NPOA" + "@id": "bts:SizeExclusionChromatography" }, { - "@id": "bts:COL" + "@id": "bts:Small-AngleX-rayScattering" }, { - "@id": "bts:NCU" + "@id": "bts:SoftAgarAssay" }, { - "@id": "bts:NPUNCU" + "@id": "bts:SouthernBlotting" }, { - "@id": "bts:RS" + "@id": "bts:Spectroscopy" }, { - "@id": "bts:TS" + "@id": "bts:StatisticalModeling" }, { - "@id": "bts:NRES" + "@id": "bts:StimulatedEmissionDepletionMicroscopy" }, { - "@id": "bts:NPU" + "@id": "bts:StimulatedRamanScattering" }, { - "@id": "bts:DUM" + "@id": "bts:StochasticOpticalReconstructionMicroscopy" }, { - "@id": "bts:POA" + "@id": "bts:Super-ResolutionMicroscopy" }, { - "@id": "bts:MOR" + "@id": "bts:SurfacePlasmonResonance" }, { - "@id": "bts:GSO" + "@id": "bts:SurveyorNucleaseAssay" }, { - "@id": "bts:RTN" + "@id": "bts:SynaptophysinStainingMethod" }, { - "@id": "bts:CC" + "@id": "bts:SyntheticGeneticArray" }, { - "@id": "bts:NMDS" + "@id": "bts:TAB-Seq" }, { - "@id": "bts:IS" + "@id": "bts:TCRSequencing" }, { - "@id": "bts:GS" + "@id": "bts:TIRFMicroscopy" }, { - "@id": "bts:DS" + "@id": "bts:TRAPStaining" }, { - "@id": "bts:GRU" + "@id": "bts:TUNELassay" }, { - "@id": "bts:PS" - } - ], - "sms:displayName": "Study Data Use Codes", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:StudyLicense", - "@type": "rdfs:Class", - "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.", - "rdfs:label": "StudyLicense", - "rdfs:subClassOf": [ + "@id": "bts:TandemMassSpectrometry" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:TandemMassTagging" + }, { - "@id": "bts:CCBY3.0" + "@id": "bts:TargetEngagementAssay" }, { - "@id": "bts:CCBY4.0" + "@id": "bts:TargetedGenomeSequencing" }, { - "@id": "bts:CCBY-NC4.0" + "@id": "bts:TargetedTranscriptomeSequencing" }, { - "@id": "bts:CCBY-NC3.0" + "@id": "bts:ThermalShiftAssay" }, { - "@id": "bts:CCBY-SA4.0" + "@id": "bts:Thin-LayerChromatography" }, { - "@id": "bts:CCBY-NC-SA4.0" - } - ], - "sms:displayName": "Study License", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StudySourceGeography", - "@type": "rdfs:Class", - "rdfs:comment": "The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.", - "rdfs:label": "StudySourceGeography", - "rdfs:subClassOf": [ + "@id": "bts:TilingArray" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:TimeLapseMicroscopy" + }, { - "@id": "bts:AD" + "@id": "bts:Time-CorrelatedSinglePhotonCounting" }, { - "@id": "bts:AE" + "@id": "bts:TissueEngineering" }, { - "@id": "bts:AF" + "@id": "bts:TissueMicroarray" }, { - "@id": "bts:AG" + "@id": "bts:TotalInternalReflectionFluorescenceMicroscopy" }, { - "@id": "bts:AI" + "@id": "bts:TractionForceMicroscopy" }, { - "@id": "bts:AL" + "@id": "bts:TransmissionElectronMicroscopy" }, { - "@id": "bts:AM" + "@id": "bts:TranswellAssay" }, { - "@id": "bts:AO" + "@id": "bts:UPLC-MSMS" }, { - "@id": "bts:AQ" + "@id": "bts:UVPhotocrosslinking" }, { - "@id": "bts:AR" + "@id": "bts:Unspecified" }, { - "@id": "bts:AS" + "@id": "bts:VibrationalSpectroscopy" }, { - "@id": "bts:AT" + "@id": "bts:VirusPlaqueAssay" }, { - 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Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetSpecies", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:AfricanBushElephant" }, { - "@id": "bts:GW" + "@id": "bts:Armadillo" }, { - "@id": "bts:GY" + "@id": "bts:AsianElephant" }, { - "@id": "bts:HK" + "@id": "bts:Boar" }, { - "@id": "bts:HM" + "@id": "bts:Cat" }, { - "@id": "bts:HN" + "@id": "bts:Chicken" }, { - "@id": "bts:HR" + "@id": "bts:Cow" }, { - "@id": "bts:HT" + "@id": "bts:Dog" }, { - "@id": "bts:HU" + "@id": "bts:Escherichiacoli" }, { - "@id": "bts:ID" + "@id": "bts:GuineaPig" }, { - "@id": "bts:IE" + "@id": "bts:Horse" }, { - "@id": "bts:IL" + "@id": "bts:Human" }, { - "@id": "bts:IM" + "@id": "bts:HumanPatient" }, { - "@id": "bts:IN" + "@id": "bts:HumanCellLine" }, { - "@id": "bts:IO" + "@id": "bts:Mouse" }, { - "@id": "bts:IQ" + "@id": "bts:Multispecies" }, { - "@id": "bts:IR" + "@id": "bts:NotApplicable" }, { - "@id": "bts:IS" + "@id": "bts:Opossum" }, { - "@id": "bts:IT" + "@id": "bts:Rabbit" }, { - "@id": "bts:JE" + "@id": "bts:Rat" }, { - "@id": "bts:JM" + "@id": "bts:Rhesusmonkey" }, { - "@id": "bts:JO" + "@id": "bts:Sheep" }, { - "@id": "bts:JP" + "@id": "bts:Trichoplaxadhaerens" }, { - "@id": "bts:KE" + "@id": "bts:Unknown" }, { - "@id": "bts:KG" + "@id": "bts:Unspecified" }, { - "@id": "bts:KH" + "@id": "bts:Worm" }, { - "@id": "bts:KI" + "@id": "bts:Yeast" }, { - "@id": "bts:KM" + "@id": "bts:FruitFly" }, { - "@id": "bts:KN" + "@id": "bts:Zebrafish" + } + ], + "sms:displayName": "DSP Dataset Species", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:DSPDatasetTumorType", + "@type": "rdfs:Class", + "rdfs:comment": "The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetTumorType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:CutaneousMelanoma" }, { - "@id": "bts:KP" + "@id": "bts:AcinarCellCarcinoma" }, { - "@id": "bts:KR" + "@id": "bts:AcuteLymphoblasticLeukemia" }, { - "@id": "bts:KW" + "@id": "bts:AcuteMonocyticLeukemia" }, { - "@id": "bts:KY" + "@id": "bts:AcuteMyeloidLeukemia" }, { - "@id": "bts:KZ" + "@id": "bts:AcutePromyelocyticLeukemia" }, { - "@id": "bts:LA" + "@id": "bts:Adenocarcinoma" }, { - "@id": "bts:LB" + "@id": "bts:Angiosarcoma" }, { - "@id": "bts:LC" + "@id": "bts:Astrocytoma" }, { - "@id": "bts:LI" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:LK" + "@id": "bts:BAcuteLymphoblasticLeukemia" }, { - "@id": "bts:LR" + "@id": "bts:B-CellNon-HodgkinLymphoma" }, { - "@id": "bts:LS" + "@id": "bts:BarrettEsophagus" }, { - "@id": "bts:LT" + "@id": "bts:BasalCellNeoplasm" }, { - 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Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", + "rdfs:label": "DSPDataUseCodes", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ML", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MM", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MM", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MN", - "rdfs:subClassOf": [ + "@id": "bts:IRB" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MO", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MO", - "rdfs:subClassOf": [ + "@id": "bts:HMB" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MP", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MP", - "rdfs:subClassOf": [ + "@id": "bts:PUB" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MP", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MQ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MQ", - "rdfs:subClassOf": [ + "@id": "bts:US" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MQ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MR", - "rdfs:subClassOf": [ + "@id": "bts:NPOA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MR", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MS", - "rdfs:subClassOf": [ + "@id": "bts:COL" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MT", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MT", - "rdfs:subClassOf": [ + "@id": "bts:NCU" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MT", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MU", - "rdfs:subClassOf": [ + "@id": "bts:NPUNCU" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MV", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MV", - "rdfs:subClassOf": [ + "@id": "bts:RS" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MV", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MW", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MW", - "rdfs:subClassOf": [ + "@id": "bts:TS" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MW", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MY", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MY", - "rdfs:subClassOf": [ + "@id": "bts:NRES" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MY", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MZ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MZ", - "rdfs:subClassOf": [ + "@id": "bts:NPU" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MZ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NA", - "rdfs:subClassOf": [ + "@id": "bts:DUM" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NC", - "rdfs:subClassOf": [ + "@id": "bts:POA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NE", - "rdfs:subClassOf": [ + "@id": "bts:MOR" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NF", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NF", - "rdfs:subClassOf": [ + "@id": "bts:GSO" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:RTN" + }, + { + "@id": "bts:CC" + }, + { + "@id": "bts:NMDS" + }, + { + "@id": "bts:IS" + }, + { + "@id": "bts:GS" + }, + { + "@id": "bts:DS" + }, + { + "@id": "bts:GRU" + }, + { + "@id": "bts:PS" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NF", + "sms:displayName": "DSP Data Use Codes", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:NG", + "@id": "bts:DSPIRBForm", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NG", + "rdfs:comment": "The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset", + "rdfs:label": "DSPIRBForm", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NG", + "sms:displayName": "DSP IRB Form", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "regex match syn\\d+" + ] }, { - "@id": "bts:NI", + "@id": "bts:DSPDatasetDestination", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NI", + "rdfs:comment": "An identifier representing the repository in which this dataset is intended to be held for long term preservation.", + "rdfs:label": "DSPDatasetDestination", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NI", + "sms:displayName": "DSP Dataset Destination", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:NL", + "@id": "bts:DSPDatasetMetadata", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NL", + "rdfs:comment": "The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.", + "rdfs:label": "DSPDatasetMetadata", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NL", + "sms:displayName": "DSP Dataset Metadata", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:NO", + "@id": "bts:DSPDatasetGrantNumber", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NO", + "rdfs:comment": "Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetGrantNumber", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NP", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NP", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ + { + "@id": "bts:Affiliated/Non-GrantAssociated" + }, + { + "@id": "bts:CA184897" + }, + { + "@id": "bts:CA184898" + }, + { + "@id": "bts:CA188388" + }, + { + "@id": "bts:CA193313" + }, + { + "@id": "bts:CA193417" + }, + { + "@id": "bts:CA193419" + }, + { + "@id": "bts:CA193461" + }, + { + "@id": "bts:CA193489" + }, + { + "@id": "bts:CA195469" + }, + { + "@id": "bts:CA199315" + }, + { + "@id": "bts:CA202123" + }, + { + "@id": "bts:CA202144" + }, + { + "@id": "bts:CA202177" + }, + { + "@id": "bts:CA202229" + }, + { + "@id": "bts:CA202241" + }, + { + "@id": "bts:CA209891" + }, + { + "@id": "bts:CA209923" + }, + { + "@id": "bts:CA209971" + }, + { + "@id": "bts:CA209975" + }, + { + "@id": "bts:CA209978" + }, + { + "@id": "bts:CA209988" + }, + { + "@id": "bts:CA209992" + }, + { + "@id": "bts:CA209997" + }, + { + "@id": "bts:CA210152" + }, + { + "@id": "bts:CA210173" + }, + { + "@id": "bts:CA210180" + }, + { + "@id": "bts:CA210181" + }, + { + "@id": "bts:CA210184" + }, + { + "@id": "bts:CA210190" + }, + { + "@id": "bts:CA214282" + }, + { + "@id": "bts:CA214292" + }, + { + "@id": "bts:CA214297" + }, + { + "@id": "bts:CA214300" + }, + { + "@id": "bts:CA214354" + }, + { + "@id": "bts:CA214369" + }, + { + "@id": "bts:CA214381" + }, + { + "@id": "bts:CA214411" + }, + { + "@id": "bts:CA215709" + }, + { + "@id": "bts:CA215794" + }, + { + "@id": "bts:CA215798" + }, + { + "@id": "bts:CA215845" + }, + { + "@id": "bts:CA215848" + }, + { + "@id": "bts:CA217297" + }, + { + "@id": "bts:CA217376" + }, + { + "@id": "bts:CA217377" + }, + { + "@id": "bts:CA217378" + }, + { + "@id": "bts:CA217450" + }, + { + "@id": "bts:CA217456" + }, + { + "@id": "bts:CA217514" + }, + { + "@id": "bts:CA217613" + }, + { + "@id": "bts:CA217617" + }, + { + "@id": "bts:CA217655" + }, + { + "@id": "bts:CA220378" + }, + { + "@id": "bts:CA223976" + }, + { + "@id": "bts:CA224012" + }, + { + "@id": "bts:CA224013" + }, + { + "@id": "bts:CA224044" + }, + { + "@id": "bts:CA225088" + }, + { + "@id": "bts:CA225566" + }, + { + "@id": "bts:CA227136" + }, + { + "@id": "bts:CA227544" + }, + { + "@id": "bts:CA227550" + }, + { + "@id": "bts:CA228608" + }, + { + "@id": "bts:CA228963" + }, + { + "@id": "bts:CA231978" + }, + { + "@id": "bts:CA232137" + }, + { + "@id": "bts:CA232161" + }, + { + "@id": "bts:CA232209" + }, + { + "@id": "bts:CA232216" + }, + { + "@id": "bts:CA232382" + }, + { + "@id": "bts:CA232517" + }, + { + "@id": "bts:CA234787" + }, + { + "@id": "bts:CA235747" + }, + { + "@id": "bts:CA238475" + }, + { + "@id": "bts:CA238720" + }, + { + "@id": "bts:CA238728" + }, + { + "@id": "bts:CA240301" + }, + { + "@id": "bts:CA241137" + }, + { + "@id": "bts:CA241927" + }, + { + "@id": "bts:CA243004" + }, + { + "@id": "bts:CA243007" + }, + { + "@id": "bts:CA243072" + }, + { + "@id": "bts:CA243073" + }, + { + "@id": "bts:CA243075" + }, + { + "@id": "bts:CA244100" + }, + { + "@id": "bts:CA244101" + }, + { + "@id": "bts:CA244107" + }, + { + "@id": "bts:CA244109" + }, + { + "@id": "bts:CA245313" + }, + { + "@id": "bts:CA248890" + }, + { + "@id": "bts:CA249799" + }, + { + "@id": "bts:CA250040" + }, + { + "@id": "bts:CA250044" + }, + { + "@id": "bts:CA250046" + }, + { + "@id": "bts:CA250481" + }, + { + "@id": "bts:CA251443" + }, + { + "@id": "bts:CA253248" + }, + { + "@id": "bts:CA253472" + }, + { + "@id": "bts:CA253540" + }, + { + "@id": "bts:CA253547" + }, + { + "@id": "bts:CA253553" + }, + { + "@id": "bts:CA254200" + }, + { + "@id": "bts:CA254886" + }, + { + "@id": "bts:CA256054" + }, + { + "@id": "bts:CA256481" + }, + { + "@id": "bts:CA260432" + }, + { + "@id": "bts:CA261694" + }, + { + "@id": "bts:CA261701" + }, + { + "@id": "bts:CA261717" + }, + { + "@id": "bts:CA261719" + }, + { + "@id": "bts:CA261822" + }, + { + "@id": "bts:CA261841" + }, + { + "@id": "bts:CA261842" + }, + { + "@id": "bts:CA263001" + }, + { + "@id": "bts:CA264583" + }, + { + "@id": "bts:CA264610" + }, + { + "@id": "bts:CA264611" + }, + { + "@id": "bts:CA264620" + }, + { + "@id": "bts:CA267170" + }, + { + "@id": "bts:CA268069" + }, + { + "@id": "bts:CA268072" + }, + { + "@id": "bts:CA268083" + }, + { + "@id": "bts:CA268084" + }, + { + "@id": "bts:CA271273" + }, + { + "@id": "bts:CA274492" + }, + { + "@id": "bts:CA274494" + }, + { + "@id": "bts:CA274499" + }, + { + "@id": "bts:CA274502" + }, + { + "@id": "bts:CA274509" + }, + { + "@id": "bts:CA275808" + }, + { + "@id": "bts:CA279408" + }, + { + "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NP", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NR", - "rdfs:subClassOf": [ + "@id": "bts:CA290442" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:CA293853" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NR", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "DSP Dataset Grant Number", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:NZ", + "@id": "bts:StudyId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NZ", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "StudyId", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NZ", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:OM", + "@id": "bts:StudydbGaPAccessionId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "OM", + "rdfs:comment": "A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.", + "rdfs:label": "StudydbGaPAccessionId", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "OM", + "sms:displayName": "Study dbGaP Accession Id", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PA", + "@id": "bts:StudyName", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PA", + "rdfs:comment": "Name of the study", + "rdfs:label": "StudyName", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PA", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Name", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PE", + "@id": "bts:StudyDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PE", + "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.", + "rdfs:label": "StudyDescription", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PE", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Description", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PF", + "@id": "bts:StudyInvestigator", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PF", + "rdfs:comment": "Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.", + "rdfs:label": "StudyInvestigator", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PF", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Investigator", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:PG", + "@id": "bts:StudyNumberofParticipants", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PG", + "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.", + "rdfs:label": "StudyNumberofParticipants", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PG", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Number of Participants", + "sms:required": "sms:true", + "sms:validationRules": [ + "int" + ] }, { - "@id": "bts:PH", + "@id": "bts:StudyDe-identificationMethodType", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PH", + "rdfs:comment": "General description of the de-identification method. Maps to DUOplus3.", + "rdfs:label": "StudyDe-identificationMethodType", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PH", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PK", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PK", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Manual" + }, + { + "@id": "bts:Semiautomatic" + }, + { + "@id": "bts:Automatic" + }, + { + "@id": "bts:NotApplicable" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PK", - "sms:required": "sms:false", + "sms:displayName": "Study De-identification Method Type", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:PL", + "@id": "bts:StudyDe-identificationMethodDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PL", + "rdfs:comment": "Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.", + "rdfs:label": "StudyDe-identificationMethodDescription", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PL", + "sms:displayName": "Study De-identification Method Description", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PM", + "@id": "bts:StudyDe-identificationMethodSoftware", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PM", + "rdfs:comment": "Software that was used to de-identify the data (if used)", + "rdfs:label": "StudyDe-identificationMethodSoftware", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PM", + "sms:displayName": "Study De-identification Method Software", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PN", + "@id": "bts:StudyIndexDate", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PN", + "rdfs:comment": "The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.", + "rdfs:label": "StudyIndexDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PR", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:DiagnosisDate" + }, + { + "@id": "bts:EnrollmentDate" + }, + { + "@id": "bts:CollectionDate" + }, + { + "@id": "bts:BirthDate" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PR", + "sms:displayName": "Study Index Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PT", + "@id": "bts:StudyReuseStatement", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PT", + "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.", + "rdfs:label": "StudyReuseStatement", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PT", + "sms:displayName": "Study Reuse Statement", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PW", + "@id": "bts:StudyDataUseCodes", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PW", + "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", + "rdfs:label": "StudyDataUseCodes", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PW", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PY", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PY", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:IRB" + }, + { + "@id": "bts:HMB" + }, + { + "@id": "bts:PUB" + }, + { + "@id": "bts:US" + }, + { + "@id": "bts:NPOA" + }, + { + "@id": "bts:COL" + }, + { + "@id": "bts:NCU" + }, + { + "@id": "bts:NPUNCU" + }, + { + "@id": "bts:RS" + }, + { + "@id": "bts:TS" + }, + { + "@id": "bts:NRES" + }, + { + "@id": "bts:NPU" + }, + { + "@id": "bts:DUM" + }, + { + "@id": "bts:POA" + }, + { + "@id": "bts:MOR" + }, + { + "@id": "bts:GSO" + }, + { + "@id": "bts:RTN" + }, + { + "@id": "bts:CC" + }, + { + "@id": "bts:NMDS" + }, + { + "@id": "bts:IS" + }, + { + "@id": "bts:GS" + }, + { + "@id": "bts:DS" + }, + { + "@id": "bts:GRU" + }, + { + "@id": "bts:PS" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PY", + "sms:displayName": "Study Data Use Codes", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:QA", + "@id": "bts:StudyLicense", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "QA", + "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.", + "rdfs:label": "StudyLicense", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "QA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RE", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:CCBY3.0" + }, + { + "@id": "bts:CCBY4.0" + }, + { + "@id": "bts:CCBY-NC4.0" + }, + { + "@id": "bts:CCBY-NC3.0" + }, + { + "@id": "bts:CCBY-SA4.0" + }, + { + "@id": "bts:CCBY-NC-SA4.0" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RE", + "sms:displayName": "Study License", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:RO", + "@id": "bts:StudySourceGeography", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RO", + "rdfs:comment": "The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.", + "rdfs:label": "StudySourceGeography", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "RO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RU", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ + { + "@id": "bts:AD" + }, + { + "@id": "bts:AE" + }, + { + "@id": "bts:AF" + }, + { + "@id": "bts:AG" + }, + { + "@id": "bts:AI" + }, + { + "@id": "bts:AL" + }, + { + "@id": "bts:AM" + }, + { + "@id": "bts:AO" + }, + { + "@id": "bts:AQ" + }, + { + "@id": "bts:AR" + }, + { + "@id": "bts:AS" + }, + { + "@id": "bts:AT" + }, + { + "@id": "bts:AU" + }, + { + "@id": "bts:AW" + }, + { + "@id": "bts:AX" + }, + { + "@id": "bts:AZ" + }, + { + "@id": "bts:BA" + }, + { + "@id": "bts:BB" + }, + { + "@id": "bts:BD" + }, + { + "@id": "bts:BE" + }, + { + "@id": 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"@id": "bts:SB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SB", - "rdfs:subClassOf": [ + "@id": "bts:SY" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SC", - "rdfs:subClassOf": [ + "@id": "bts:SZ" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SD", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SD", - "rdfs:subClassOf": [ + "@id": "bts:TC" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SD", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SE", - "rdfs:subClassOf": [ + "@id": "bts:TD" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SG", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SG", - "rdfs:subClassOf": [ + "@id": "bts:TF" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SG", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SH", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SH", - "rdfs:subClassOf": [ + "@id": "bts:TG" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SH", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SI", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SI", - "rdfs:subClassOf": [ + "@id": "bts:TH" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SI", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SJ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SJ", - "rdfs:subClassOf": [ + "@id": "bts:TJ" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SJ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SK", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SK", - "rdfs:subClassOf": [ + "@id": "bts:TK" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SK", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SL", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SL", - "rdfs:subClassOf": [ + "@id": "bts:TL" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SL", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SM", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SM", - "rdfs:subClassOf": [ + "@id": "bts:TM" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SN", - "rdfs:subClassOf": [ + "@id": "bts:TN" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SO", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SO", - "rdfs:subClassOf": [ + "@id": "bts:TO" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SR", - "rdfs:subClassOf": [ + "@id": "bts:TR" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SR", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SS", - "rdfs:subClassOf": [ + "@id": "bts:TT" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ST", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ST", - "rdfs:subClassOf": [ + "@id": "bts:TV" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ST", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SV", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SV", - "rdfs:subClassOf": [ + "@id": "bts:TW" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SV", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SX", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SX", - "rdfs:subClassOf": [ + "@id": "bts:TZ" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SX", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SY", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SY", - "rdfs:subClassOf": [ + "@id": "bts:UA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SY", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SZ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SZ", - "rdfs:subClassOf": [ + "@id": "bts:UG" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SZ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TC", - "rdfs:subClassOf": [ + "@id": "bts:UM" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TD", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TD", - "rdfs:subClassOf": [ + "@id": "bts:US" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TD", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TF", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TF", - "rdfs:subClassOf": [ + "@id": "bts:UY" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TF", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TG", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TG", - "rdfs:subClassOf": [ + "@id": "bts:UZ" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TG", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TH", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TH", - "rdfs:subClassOf": [ + "@id": "bts:VA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TH", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TJ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TJ", - "rdfs:subClassOf": [ + "@id": "bts:VC" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TJ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TK", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TK", - "rdfs:subClassOf": [ + "@id": "bts:VE" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TK", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TL", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TL", - "rdfs:subClassOf": [ + "@id": "bts:VG" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TL", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TM", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TM", - "rdfs:subClassOf": [ + "@id": "bts:VI" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TN", - "rdfs:subClassOf": [ + "@id": "bts:VN" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TO", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TO", - "rdfs:subClassOf": [ + "@id": "bts:VU" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TR", - "rdfs:subClassOf": [ + "@id": "bts:WF" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TR", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TT", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TT", - "rdfs:subClassOf": [ + "@id": "bts:WS" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TT", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TV", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TV", - "rdfs:subClassOf": [ + "@id": "bts:YE" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TV", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TW", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TW", - "rdfs:subClassOf": [ + "@id": "bts:YT" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TW", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TZ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TZ", - "rdfs:subClassOf": [ + "@id": "bts:ZA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TZ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:UG", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UG", - "rdfs:subClassOf": [ + "@id": "bts:ZM" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:ZW" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "UG", + "sms:displayName": "Study Source Geography", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:UM", + "@id": "bts:StudyDataPermission", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UM", + "rdfs:comment": "The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.", + "rdfs:label": "StudyDataPermission", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:UY", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UY", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "UY", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:UZ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UZ", - "rdfs:subClassOf": [ + "@id": "bts:Agreement" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "UZ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VA", - "rdfs:subClassOf": [ + "@id": "bts:Attestation" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VC", - "rdfs:subClassOf": [ + "@id": "bts:Award" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:Other" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VC", + "sms:displayName": "Study Data Permission", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:VE", + "@id": "bts:StudyDataTier", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VE", + "rdfs:comment": "The access tier(s) associated with the data in this study. Maps to DUOplus5.", + "rdfs:label": "StudyDataTier", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "VE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VG", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VG", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VG", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VI", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VI", - "rdfs:subClassOf": [ + "@id": "bts:Anonymous" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VI", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VN", - "rdfs:subClassOf": [ + "@id": "bts:Open" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VU", - "rdfs:subClassOf": [ + "@id": "bts:Controlled" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:Private" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VU", + "sms:displayName": "Study Data Tier", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:WF", + "@id": "bts:Manual", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WF", + "rdfs:label": "Manual", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyDe-identificationMethodType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "WF", + "sms:displayName": "Manual", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WS", + "@id": "bts:Semiautomatic", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WS", + "rdfs:label": "Semiautomatic", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyDe-identificationMethodType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "WS", + "sms:displayName": "Semiautomatic", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:YE", + "@id": "bts:Automatic", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "YE", + "rdfs:label": "Automatic", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyDe-identificationMethodType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "YE", + "sms:displayName": "Automatic", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:YT", + "@id": "bts:DiagnosisDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "YT", + "rdfs:label": "DiagnosisDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "YT", + "sms:displayName": "Diagnosis Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ZA", + "@id": "bts:EnrollmentDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ZA", + "rdfs:label": "EnrollmentDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ZA", + "sms:displayName": "Enrollment Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ZM", + "@id": "bts:CollectionDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ZM", + "rdfs:label": "CollectionDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ZM", + "sms:displayName": "Collection Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ZW", + "@id": "bts:BirthDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ZW", + "rdfs:label": "BirthDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ZW", + "sms:displayName": "Birth Date", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -322461,74 +326982,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:Anonymous", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Anonymous", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Anonymous", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Open", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Open", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Open", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Controlled", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Controlled", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Controlled", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Private", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Private", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Private", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Theme", "@type": "rdfs:Class", @@ -323671,23 +328124,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:Contributor", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Contributor", - "rdfs:subClassOf": [ - { - "@id": "bts:ToolEntityRole" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Contributor", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Support", "@type": "rdfs:Class", From 7ca91da0141971ad600f1933ee83880865d1f31b Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Tue, 8 Apr 2025 14:39:08 -0700 Subject: [PATCH 093/106] Add manifest template CSVs for updated model --- templates/DataDSP.csv | 2 ++ templates/DatasetView.csv | 2 ++ templates/EducationalResource.csv | 2 ++ templates/FileView.csv | 2 ++ templates/GrantView.csv | 2 ++ templates/PersonView.csv | 2 ++ templates/PublicationView.csv | 2 ++ templates/Study.csv | 2 ++ templates/ToolView.csv | 2 ++ 9 files changed, 18 insertions(+) create mode 100644 templates/DataDSP.csv create mode 100644 templates/DatasetView.csv create mode 100644 templates/EducationalResource.csv create mode 100644 templates/FileView.csv create mode 100644 templates/GrantView.csv create mode 100644 templates/PersonView.csv create mode 100644 templates/PublicationView.csv create mode 100644 templates/Study.csv create mode 100644 templates/ToolView.csv diff --git a/templates/DataDSP.csv b/templates/DataDSP.csv new file mode 100644 index 00000000..7d5d9613 --- /dev/null +++ b/templates/DataDSP.csv @@ -0,0 +1,2 @@ +Component,DataDSP_id,GrantView Key,Study Key,DatasetView Key,DSP Dataset Alias,DSP Dataset Name,DSP Dataset Url,DSP Dataset Assay,DSP Dataset Level,DSP Dataset Species,DSP Dataset Tumor Type,DSP Dataset Tissue,DSP Dataset File Formats,DSP Number of Files,DSP Number of Samples,DSP Number of Participants,DSP Storage Size,DSP Dataset Description,DSP Planned Upload Date,DSP Planned Release Date,DSP Data Use Codes,DSP IRB Form,DSP Dataset Destination,DSP Dataset Metadata +DataDSP,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/DatasetView.csv b/templates/DatasetView.csv new file mode 100644 index 00000000..c96adecd --- /dev/null +++ b/templates/DatasetView.csv @@ -0,0 +1,2 @@ +Component,DatasetView_id,GrantView Key,Study Key,PublicationView Key,Dataset Name,Dataset Alias,Dataset Description,Dataset Design,Dataset Assay,Dataset Species,Dataset Tumor Type,Dataset Tissue,Dataset Url,Dataset Doi,Dataset File Formats,Data Use Codes +DatasetView,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/EducationalResource.csv b/templates/EducationalResource.csv new file mode 100644 index 00000000..3d93f16b --- /dev/null +++ b/templates/EducationalResource.csv @@ -0,0 +1,2 @@ +Component,EducationalResource_id,GrantView Key,Study Key,DatasetView Key,PublicationView Key,ToolView Key,Resource Title,Resource Link,Resource Doi,Resource Topic,Resource Activity Type,Resource Primary Format,Resource Intended Use,Resource Primary Audience,Resource Educational Level,Resource Description,Resource Origin Institution,Resource Language,Resource Contributors,Resource Secondary Topic,Resource License,Resource Use Requirements,Resource Alias,Resource Internal Identifier,Resource Media Accessibility,Resource Access Hazard,Resource Dataset Alias,Resource Tool Link +EducationalResource,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/FileView.csv b/templates/FileView.csv new file mode 100644 index 00000000..3c951075 --- /dev/null +++ b/templates/FileView.csv @@ -0,0 +1,2 @@ +Component,FileView_id,Biospecimen Key,Study Key,DatasetView Key,Filename,File Alias,File Description,File Design,File Level,File Assay,File Species,File Tumor Type,File Tissue,File Anatomic Site,File Url,File Format,Data Use Codes,File Longitudinal Group,File Longitudinal Event Type,File Longitudinal Sequence Identifier,File Longitudinal Time Elapsed Unit,File Longitudinal Sequential Time Elapsed,File Longitudinal Total Time Elapsed +FileView,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/GrantView.csv b/templates/GrantView.csv new file mode 100644 index 00000000..c8caa00d --- /dev/null +++ b/templates/GrantView.csv @@ -0,0 +1,2 @@ +Component,GrantView_id,Grant Name,Grant Number,Grant Abstract,Grant Type,Grant Theme Name,Grant Institution Name,Grant Institution Alias,Grant Investigator,Grant Consortium Name,Grant Start Date,Grant End Date,NIH RePORTER Link,Duration of Funding,Embargo End Date,Grant Synapse Team,Grant Synapse Project +GrantView,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/PersonView.csv b/templates/PersonView.csv new file mode 100644 index 00000000..3c426a2b --- /dev/null +++ b/templates/PersonView.csv @@ -0,0 +1,2 @@ +Component,PersonView_id,GrantView Key,Person Consortium Name,Name,Alternative Names,Email,Url,Orcid Id,Synapse Profile Id,Last Known Institution,Working Group Participation,Chair Roles,Consent For Portal Display,Portal Display,Person Publications,Person Datasets,Person Tools,Person Educational Resources +PersonView,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/PublicationView.csv b/templates/PublicationView.csv new file mode 100644 index 00000000..e7e67395 --- /dev/null +++ b/templates/PublicationView.csv @@ -0,0 +1,2 @@ +Component,PublicationView_id,Study Key,GrantView Key,Publication Doi,Publication Journal,Pubmed Id,Pubmed Url,Publication Title,Publication Year,Publication Keywords,Publication Authors,Publication Abstract,Publication Assay,Publication Tumor Type,Publication Tissue,Publication Accessibility,Publication Dataset Alias +PublicationView,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/Study.csv b/templates/Study.csv new file mode 100644 index 00000000..9821155a --- /dev/null +++ b/templates/Study.csv @@ -0,0 +1,2 @@ +Component,Study_id,GrantView Key,ProjectView Key,Study dbGaP Accession Id,Study Name,Study Description,Study Investigator,PersonView Key,Study Number of Participants,Study De-identification Method Type,Study De-identification Method Description,Study De-identification Method Software,Study Index Date,Study Reuse Statement,Study Data Use Codes,Study License,Study Source Geography,Study Data Permission,Study Data Tier +Study,,,,,,,,,,,,,,,,,,, \ No newline at end of file diff --git a/templates/ToolView.csv b/templates/ToolView.csv new file mode 100644 index 00000000..dc39e592 --- /dev/null +++ b/templates/ToolView.csv @@ -0,0 +1,2 @@ +Component,ToolView_id,GrantView Key,Study Key,DatasetView Key,PublicationView Key,Tool Name,Tool Description,Tool Homepage,Tool Version,Tool Operation,Tool Input Data,Tool Output Data,Tool Input Format,Tool Output Format,Tool Function Note,Tool Cmd,Tool Type,Tool Topic,Tool Operating System,Tool Language,Tool License,Tool Cost,Tool Accessibility,Tool Download Url,Tool Download Type,Tool Download Note,Tool Download Version,Tool Documentation Url,Tool Documentation Type,Tool Documentation Note,Tool Link Url,Tool Link Type,Tool Link Note,Tool Doi,Tool Date Last Modified,Tool Release Date,Tool Package Dependencies,Tool Package Dependencies Present,Tool Compute Requirements,Tool Entity Name,Tool Entity Type,Tool Entity Role +ToolView,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, \ No newline at end of file From 7e907361f87219f0ab07656f3997f284e2cc5be3 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 10 Apr 2025 16:30:58 -0700 Subject: [PATCH 094/106] Update annotationProperty.csv Add Imaging Level 2 attributes to GeoMx Imaging --- modules/geomxImaging/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/geomxImaging/annotationProperty.csv b/modules/geomxImaging/annotationProperty.csv index 194b4397..cae1ad62 100644 --- a/modules/geomxImaging/annotationProperty.csv +++ b/modules/geomxImaging/annotationProperty.csv @@ -1,5 +1,5 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates, ImagingChannel Key, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, Image Objective, Image Nominal Magnification, Image Lense Aperture, Image Working Distance, Image Working Distance Unit, Image Immersion Type, Image Pyramidal, Image Z stack, Image Timeseries, Image FOV Index, Image FOV Size X, Image FOV Size X Unit, Image FOV Size Y, Image FOV Size Y Unit, Image Frame Averaging, Image Identifier, Image Dimension Order, Image Physical Size X, Image Physical Size X Unit, Image Physical Size Y, Image Physical Size Y Unit, Image Physical Size Z, Image Physical Size Z Unit, Image Pixels BigEndian, Image Plane Count, Image Channel Size, Image Number of Timepoints, Image X Pixels, Image Y Pixels, Image Z Pixels, Image Pixel Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPImaging_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx Imaging Channel Names,Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,HTAN,list like GeoMx Imaging AOI Coordinates,Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,MC2/STE,list like From dbe64a22a4ffca5695054a2cde06fa5724ab9ab6 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 10 Apr 2025 16:31:22 -0700 Subject: [PATCH 095/106] Update annotationProperty.csv Add Sequencing Level 1 attributes to GeoMx Level 1 --- modules/geomxLevel1/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/geomxLevel1/annotationProperty.csv b/modules/geomxLevel1/annotationProperty.csv index 92b9a34b..f2068418 100644 --- a/modules/geomxLevel1/annotationProperty.csv +++ b/modules/geomxLevel1/annotationProperty.csv @@ -1,4 +1,4 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, +NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, NanoStringGeoMxDSPLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx DSP Assay Type,The assay type which was used for the GeoMx DSP pipeline.,"RNA nCounter, Protein nCounter, Protein NGS, RNA NGS",,FALSE,,,,HTAN, From 64c7b92f91ddc182d4b7386e08c28eb935f5547e Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 10 Apr 2025 16:31:50 -0700 Subject: [PATCH 096/106] Update annotationProperty.csv Add Sequencing Level 2 attributes to GeoMx Level 2 --- modules/geomxLevel2/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/geomxLevel2/annotationProperty.csv b/modules/geomxLevel2/annotationProperty.csv index 1060af99..7fad7a72 100644 --- a/modules/geomxLevel2/annotationProperty.csv +++ b/modules/geomxLevel2/annotationProperty.csv @@ -1,3 +1,3 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique From 0e305ffbd95c483ccb358d8949c87b69340b2abd Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 10 Apr 2025 16:32:35 -0700 Subject: [PATCH 097/106] Update annotationProperty.csv Add Sequencing Level 3 attributes to GeoMx Level 3 --- modules/geomxLevel3/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/geomxLevel3/annotationProperty.csv b/modules/geomxLevel3/annotationProperty.csv index ab29ed8f..1acfa18a 100644 --- a/modules/geomxLevel3/annotationProperty.csv +++ b/modules/geomxLevel3/annotationProperty.csv @@ -1,3 +1,3 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NGS Unique Probe Count, NGS Unique Target Count, NGS Matrix Type, Software and Version, Workflow Type, Workflow Parameter Description, Workflow Link",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique From 103139c00323d1865843d43e96d19af4c8f7cb20 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 10 Apr 2025 16:47:42 -0700 Subject: [PATCH 098/106] collate CSVs and convert to JSON-LD schematic 24.12.1 --- mc2.model.csv | 26 +- mc2.model.jsonld | 120483 +++++++++++++++++++++++--------------------- 2 files changed, 62595 insertions(+), 57914 deletions(-) diff --git a/mc2.model.csv b/mc2.model.csv index 8f44c4ac..99136dd3 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -53,13 +53,27 @@ Website,Website of research consortium,,,TRUE,,,,,url Consortium_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique community,The Sage Bionetworks project or initiative with which the dataset is associated.,,,FALSE,,,,Synapse Data Catalog,str description,A text description of the dataset. Can be identifical to Dataset Description.,,,FALSE,,,,Synapse Data Catalog,str -contributors,The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.,,,FALSE,,,,Synapse Data Catalog,list like -keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,FALSE,,,,Synapse Data Catalog,list like +contributor,"Organization(s), insitution(s), or person(s) that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.",,,FALSE,,,,Synapse Data Catalog,list like +keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,TRUE,,,,Synapse Data Catalog,list like individuals,"The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples",,,FALSE,,,,Synapse Data Catalog,int link,"The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.",,,FALSE,,,,Synapse Data Catalog,url croissant,A Synapse url where the croissant file associated with this dataset is stored.,,,FALSE,,,,Synapse Data Catalog,url DataCatalog,The manifest used to describe datasets for the Synapse Data Catalog.,,"Component, DataCatalog_id, community, description, contributors, keywords, individuals, link, croissant",FALSE,,,Study,Synapse Data Catalog, DataCatalog_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,MC2,unique +accessType,Access type for the dataset.,"Anonymous, Open, Controlled, Private",,FALSE,,,,schema.org/dataset,str +alternateName,An altername name that can be used for search and discovery improvement.,,,FALSE,,,,schema.org/dataset,str +conditionsOfAccess,"Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown.",,,FALSE,,,,schema.org/dataset,str +countryOfOrigin,Origin of individuals from which data were generated. Omit if not applicable/unknown.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,schema.org/dataset,list like +creator,Organization or person that is creator of the dataset. Default is the PI of the project and/or the user who created all files in the dataset.,,,TRUE,,,,schema.org/dataset,str +dataUseModifiers,"List of data use ontology (DUO) terms that are true for dataset, which describes the allowable scope and terms for data use. Omit property if not applicable/unknown.","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,schema.org/dataset,list like +datePublished,Date data were published/available on Synapse.,,,FALSE,,,,schema.org/dataset,int +funder,The entity(ies) responsible for funding the data contributors.,NIH,,FALSE,,,,schema.org/dataset,list like +includedInDataCatalog,Link(s) to known data catalog(s) the dataset is included in.,,,FALSE,,,,schema.org/dataset,str +license,"The terms and conditions underwhich the data are allowed to be accessed and used. Unless information for license is clear, this should default to UNKNOWN.","CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,schema.org/dataset,str +measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,FALSE,,,,schema.org/dataset,list like +species,"Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,schema.org/dataset,list like +subject,Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme.,,,FALSE,,,,schema.org/dataset,list like +title,The name of the dataset.,,,TRUE,,,,schema.org/dataset,str Dataset Name,Name of the dataset,,,TRUE,,,,, Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique Dataset Description,Description of the dataset.,,,FALSE,,,,, @@ -125,16 +139,16 @@ Synapse ID of GeoMx Lab Worksheet File,Synapse ID(s) of Lab Worksheet Files outp Synapse ID of GeoMx DSP PKC File,The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.,,,FALSE,,,,HTAN,list like::regex match syn\d+ Synapse ID of GeoMx DSP ROI Segment Annotation File,Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.,,,FALSE,,,,HTAN,list like::regex match syn\d+ Synapse ID of GeoMx DSP Config File,Synapse ID of config.ini file generated by the GeoMx DSP workflow.,,,FALSE,,,,MC2/STE,list like::regex match syn\d+ -NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates, ImagingChannel Key, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, Image Objective, Image Nominal Magnification, Image Lense Aperture, Image Working Distance, Image Working Distance Unit, Image Immersion Type, Image Pyramidal, Image Z stack, Image Timeseries, Image FOV Index, Image FOV Size X, Image FOV Size X Unit, Image FOV Size Y, Image FOV Size Y Unit, Image Frame Averaging, Image Identifier, Image Dimension Order, Image Physical Size X, Image Physical Size X Unit, Image Physical Size Y, Image Physical Size Y Unit, Image Physical Size Z, Image Physical Size Z Unit, Image Pixels BigEndian, Image Plane Count, Image Channel Size, Image Number of Timepoints, Image X Pixels, Image Y Pixels, Image Z Pixels, Image Pixel Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPImaging_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx Imaging Channel Names,Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,HTAN,list like GeoMx Imaging AOI Coordinates,Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,MC2/STE,list like -NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, +NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, NanoStringGeoMxDSPLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx DSP Assay Type,The assay type which was used for the GeoMx DSP pipeline.,"RNA nCounter, Protein nCounter, Protein NGS, RNA NGS",,FALSE,,,,HTAN, -NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NGS Unique Probe Count, NGS Unique Target Count, NGS Matrix Type, Software and Version, Workflow Type, Workflow Parameter Description, Workflow Link",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw reads, NGS Stitched reads, NGS Aligned reads, NGS Deduplicated reads, NGS Trimmed reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", NanoStringGeoMXROISegmentAnnotation_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 312c90d8..fe439b90 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -29173,6 +29173,9 @@ { "@id": "bts:BiospecimenFixative" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29399,6 +29402,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29428,6 +29434,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29457,6 +29466,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29486,6 +29498,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29515,6 +29530,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29544,6 +29562,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29573,6 +29594,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29602,6 +29626,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29631,6 +29658,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29660,6 +29690,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29689,6 +29722,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29718,6 +29754,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29747,6 +29786,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29776,6 +29818,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29805,6 +29850,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29834,6 +29882,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29902,6 +29953,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29974,6 +30028,9 @@ { "@id": "bts:ModelPrimaryDiagnosis" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -30003,6 +30060,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30032,6 +30092,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30061,6 +30124,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30090,6 +30156,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30119,6 +30188,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30148,6 +30220,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30183,6 +30258,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30225,6 +30303,9 @@ { "@id": "bts:ToolOutputFormat" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -30254,6 +30335,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30283,6 +30367,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30312,6 +30399,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30341,6 +30431,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -31667,6 +31760,9 @@ { "@id": "bts:IndividualTumorGrade" }, + { + "@id": "bts:CountryOfOrigin" + }, { "@id": "bts:StudySourceGeography" } @@ -32072,6 +32168,9 @@ { "@id": "bts:BiospecimenComposition" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -201200,6 +201299,9 @@ { "@id": "bts:ModelTreatmentType" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -202016,6 +202118,9 @@ "rdfs:subClassOf": [ { "@id": "bts:ConsortiumFundingAgency" + }, + { + "@id": "bts:Funder" } ], "schema:isPartOf": { @@ -202064,23 +202169,21 @@ ] }, { - "@id": "bts:Contributors", + "@id": "bts:Contributor", "@type": "rdfs:Class", - "rdfs:comment": "The insitution that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.", - "rdfs:label": "Contributors", + "rdfs:comment": "TBD", + "rdfs:label": "Contributor", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:ToolEntityRole" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "contributors", + "sms:displayName": "Contributor", "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { "@id": "bts:Keywords", @@ -202096,7 +202199,7 @@ "@id": "http://schema.biothings.io" }, "sms:displayName": "keywords", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "list like" ] @@ -202228,6 +202331,23 @@ "unique" ] }, + { + "@id": "bts:Contributors", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Contributors", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "contributors", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Study", "@type": "rdfs:Class", @@ -202313,10 +202433,10 @@ "sms:validationRules": [] }, { - "@id": "bts:DatasetName", + "@id": "bts:AccessType", "@type": "rdfs:Class", - "rdfs:comment": "Name of the dataset", - "rdfs:label": "DatasetName", + "rdfs:comment": "Access type for the dataset.", + "rdfs:label": "AccessType", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202325,68 +202445,111 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Name", - "sms:required": "sms:true", + "schema:rangeIncludes": [ + { + "@id": "bts:Anonymous" + }, + { + "@id": "bts:Open" + }, + { + "@id": "bts:Controlled" + }, + { + "@id": "bts:Private" + } + ], + "sms:displayName": "accessType", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:Anonymous", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Anonymous", + "rdfs:subClassOf": [ + { + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Anonymous", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetAlias", + "@id": "bts:Open", "@type": "rdfs:Class", - "rdfs:comment": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.", - "rdfs:label": "DatasetAlias", + "rdfs:comment": "TBD", + "rdfs:label": "Open", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Alias", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] + "sms:displayName": "Open", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:DatasetDescription", + "@id": "bts:Controlled", "@type": "rdfs:Class", - "rdfs:comment": "Description of the dataset.", - "rdfs:label": "DatasetDescription", + "rdfs:comment": "TBD", + "rdfs:label": "Controlled", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Description", + "sms:displayName": "Controlled", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetDesign", + "@id": "bts:Private", "@type": "rdfs:Class", - "rdfs:comment": "The overall design of the dataset.", - "rdfs:label": "DatasetDesign", + "rdfs:comment": "TBD", + "rdfs:label": "Private", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:AccessType" + }, + { + "@id": "bts:StudyDataTier" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Design", + "sms:displayName": "Private", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetUrl", + "@id": "bts:AlternateName", "@type": "rdfs:Class", - "rdfs:comment": "The url of where the dataset is stored.", - "rdfs:label": "DatasetUrl", + "rdfs:comment": "An altername name that can be used for search and discovery improvement.", + "rdfs:label": "AlternateName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202395,17 +202558,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Url", - "sms:required": "sms:true", + "sms:displayName": "alternateName", + "sms:required": "sms:false", "sms:validationRules": [ - "url" + "str" ] }, { - "@id": "bts:DatasetDoi", + "@id": "bts:ConditionsOfAccess", "@type": "rdfs:Class", - "rdfs:comment": "The Digital Object Identifier (DOI) associated with the dataset.", - "rdfs:label": "DatasetDoi", + "rdfs:comment": "Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown.", + "rdfs:label": "ConditionsOfAccess", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202414,17 +202577,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Doi", - "sms:required": "sms:true", + "sms:displayName": "conditionsOfAccess", + "sms:required": "sms:false", "sms:validationRules": [ - "url" + "str" ] }, { - "@id": "bts:DatasetAssay", + "@id": "bts:CountryOfOrigin", "@type": "rdfs:Class", - "rdfs:comment": "The assay the dataset is representative of. Multiple values permitted, comma separated.", - "rdfs:label": "DatasetAssay", + "rdfs:comment": "Origin of individuals from which data were generated. Omit if not applicable/unknown.", + "rdfs:label": "CountryOfOrigin", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -202435,8813 +202598,7783 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:10-cellRNASequencing" + "@id": "bts:AD" }, { - "@id": "bts:16SRibosomalGeneSequencingAssay" + "@id": "bts:AE" }, { - "@id": "bts:3'RNA-seq" + "@id": "bts:AF" }, { - "@id": "bts:3C" + "@id": "bts:AG" }, { - "@id": "bts:3C-qPCR" + "@id": "bts:AI" }, { - "@id": "bts:3DATAC-PALM" + "@id": "bts:AL" }, { - "@id": "bts:3DBioprinting" + "@id": "bts:AM" }, { - "@id": "bts:3DCellCulture" + "@id": "bts:AO" }, { - "@id": "bts:4C" + "@id": "bts:AQ" }, { - "@id": "bts:5C" + "@id": "bts:AR" }, { - "@id": "bts:ATAC-Seq" + "@id": "bts:AS" }, { - "@id": "bts:ATPBioluminescenceAssay" + "@id": "bts:AT" }, { - "@id": "bts:AffinityPurificationMassSpectrometry" + "@id": "bts:AU" }, { - "@id": "bts:Allograft" + "@id": "bts:AW" }, { - "@id": "bts:AmpliconSequencing" + "@id": "bts:AX" }, { - "@id": "bts:AngiogenesisAssay" + "@id": "bts:AZ" }, { - "@id": "bts:ApoptosisAssay" + "@id": "bts:BA" }, { - "@id": "bts:AtomicAbsorptionSpectrophotometry" + "@id": "bts:BB" }, { - "@id": "bts:AtomicAbsorptionSpectroscopy" + "@id": "bts:BD" }, { - "@id": "bts:AtomicForceMicroscopy" + "@id": "bts:BE" }, { - "@id": "bts:Autoradiography" + "@id": "bts:BF" }, { - "@id": "bts:Barcode-Seq" + "@id": "bts:BG" }, { - "@id": "bts:BicinchoninicAcidAssay" + "@id": "bts:BH" }, { - "@id": "bts:BindingAssay" + "@id": "bts:BI" }, { - "@id": "bts:Bio-LayerInterferometry" + "@id": "bts:BJ" }, { - "@id": "bts:BioluminescenceImaging" + "@id": "bts:BL" }, { - "@id": "bts:BisulfiteSequencing" + "@id": "bts:BM" }, { - "@id": "bts:BrightfieldMicroscopy" + "@id": "bts:BN" }, { - "@id": "bts:BrillouinMicroscopy" + "@id": "bts:BO" }, { - "@id": "bts:CASFISH" + "@id": "bts:BQ" }, { - "@id": "bts:CITE-seq" + "@id": "bts:BR" }, { - "@id": "bts:CLIP-qPCR" + "@id": "bts:BS" }, { - "@id": "bts:CRISPR" + "@id": "bts:BT" }, { - "@id": "bts:CUT&RUN" + "@id": "bts:BV" }, { - "@id": "bts:CUT&Tag-Sequencing" + "@id": "bts:BW" }, { - "@id": "bts:CellAdhesionAssay" + "@id": "bts:BY" }, { - "@id": "bts:CellProliferationAssay" + "@id": "bts:BZ" }, { - "@id": "bts:CellViabilityAssay" + "@id": "bts:CA" }, { - "@id": "bts:Cell-spreadingAssay" + "@id": "bts:CC" }, { - "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay" + "@id": "bts:CD" }, { - "@id": "bts:CerenkovLuminescenceImaging" + "@id": "bts:CF" }, { - "@id": "bts:ChIA-PET" + "@id": "bts:CG" }, { - "@id": "bts:ChIP-PCR" + "@id": "bts:CH" }, { - "@id": "bts:ChIP-Seq" + "@id": "bts:CI" }, { - "@id": "bts:ChIP-qPCRassay" + "@id": "bts:CK" }, { - "@id": "bts:ChemiluminescentAssay" + "@id": "bts:CL" }, { - "@id": "bts:ChemotaxisAssay" + "@id": "bts:CM" }, { - "@id": "bts:CircularDichroismSpectroscopy" + "@id": "bts:CN" }, { - "@id": "bts:Co-Immunoprecipitation" + "@id": "bts:CO" }, { - "@id": "bts:Co-cultureAssay" + "@id": "bts:CR" }, { - "@id": "bts:Collision-InducedDissociation" + "@id": "bts:CU" }, { - "@id": "bts:ColorimetricCellViabilityAssay" + "@id": "bts:CV" }, { - "@id": "bts:ComputationalModeling" + "@id": "bts:CW" }, { - "@id": "bts:ComputationalTool" + "@id": "bts:CX" }, { - "@id": "bts:ComputedTomography" + "@id": "bts:CY" }, { - "@id": "bts:ConfocalMicroscopy" + "@id": "bts:CZ" }, { - "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy" + "@id": "bts:DE" }, { - "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing" + "@id": "bts:DJ" }, { - "@id": "bts:Cross-LinkingMassSpectrometry" + "@id": "bts:DK" }, { - "@id": "bts:CyclicImmunofluorescence" + "@id": "bts:DM" }, { - "@id": "bts:CytochemicalStain" + "@id": "bts:DO" }, { - "@id": "bts:CytokineExpressionProfile" + "@id": "bts:DZ" }, { - "@id": "bts:CytometricBeadArrayAssay" + "@id": "bts:EC" }, { - "@id": "bts:CytotoxicityAssay" + "@id": "bts:EE" }, { - "@id": "bts:DBiT-Seq" + "@id": "bts:EG" }, { - "@id": "bts:DNAGene-ExpressionMicroarray" + "@id": "bts:EH" }, { - "@id": "bts:DNAMethylationArray" + "@id": "bts:ER" }, { - "@id": "bts:DNASequencing" + "@id": "bts:ES" }, { - "@id": "bts:DNase-Seq" + "@id": "bts:ET" }, { - "@id": "bts:DRIP-seq" + "@id": "bts:FI" }, { - "@id": "bts:DarkFieldMicroscopy" + "@id": "bts:FJ" }, { - "@id": "bts:DeepMutationalScanning" + "@id": "bts:FK" }, { - "@id": "bts:DesorptionElectrosprayIonization" + "@id": "bts:FM" }, { - "@id": "bts:DideoxyChainTerminationDNASequencing" + "@id": "bts:FO" }, { - "@id": "bts:DifferentialInterferenceContrastMicroscopy" + "@id": "bts:FR" }, { - "@id": "bts:DifferentialScanningFluorimetry" + "@id": "bts:GA" }, { - "@id": "bts:DiffusionWeightedImaging" + "@id": "bts:GB" }, { - "@id": "bts:DirectLong-ReadRNASequencing" + "@id": "bts:GD" }, { - "@id": "bts:Drop-Seq" + "@id": "bts:GE" }, { - "@id": "bts:DropletDigitalPCR" + "@id": "bts:GF" }, { - "@id": "bts:Dual-LuciferaseReporterAssay" + "@id": "bts:GG" }, { - "@id": "bts:DyeEndocytosisAssay" + "@id": "bts:GH" }, { - "@id": "bts:DynamicContrast-EnhancedMagneticResonanceImaging" + "@id": "bts:GI" }, { - "@id": "bts:DynamicForceSpectroscopy" + "@id": "bts:GL" }, { - "@id": "bts:DynamicLightScattering" + "@id": "bts:GM" }, { - "@id": "bts:DynamicSusceptibilityContrast-EnhancedMagneticResonanceImaging" + "@id": "bts:GN" }, { - "@id": "bts:ELISA" + "@id": "bts:GP" }, { - "@id": "bts:EfferocytosisAssay" + "@id": "bts:GQ" }, { - "@id": "bts:ElectronDiffraction" + "@id": "bts:GR" }, { - "@id": "bts:ElectronMicroscopy" + "@id": "bts:GS" }, { - "@id": "bts:ElectronParamagneticResonanceSpectroscopy" + "@id": "bts:GT" }, { - "@id": "bts:ElectrophoreticMobilityShiftAssay" + "@id": "bts:GU" }, { - "@id": "bts:ElectrosprayIonizationTime-of-FlightMassSpectrometry" + "@id": "bts:GW" }, { - "@id": "bts:EndotoxinAssay" + "@id": "bts:GY" }, { - "@id": "bts:Energy-DispersiveX-RaySpectroscopy" + "@id": "bts:HK" }, { - "@id": "bts:EnzymeActivityAssay" + "@id": "bts:HM" }, { - "@id": "bts:Enzyme-LinkedImmunospotAssay" + "@id": "bts:HN" }, { - "@id": "bts:EpidemiologicalMethod" + "@id": "bts:HR" }, { - "@id": "bts:FAIRE-Seq" + "@id": "bts:HT" }, { - "@id": "bts:FISH" + "@id": "bts:HU" }, { - "@id": "bts:FlowCytometry" + "@id": "bts:ID" }, { - "@id": "bts:FluorescenceActivatedCellSorting" + "@id": "bts:IE" }, { - "@id": "bts:FluorescenceCorrelationSpectroscopy" + "@id": "bts:IL" }, { - "@id": "bts:FluorescenceImaging" + "@id": "bts:IM" }, { - "@id": "bts:FluorescenceLifetimeImagingMicroscopy" + "@id": "bts:IN" }, { - "@id": "bts:FluorescenceMicroscopy" + "@id": "bts:IO" }, { - "@id": "bts:FluorescenceRecoveryAfterPhoto-Bleaching" + "@id": "bts:IQ" }, { - "@id": "bts:FluorescentAntibodyProcedure" + "@id": "bts:IR" }, { - "@id": "bts:FluorescentCellBarcoding" + "@id": "bts:IS" }, { - "@id": "bts:FluorescentInSituSequencing" + "@id": "bts:IT" }, { - "@id": "bts:FocusedIonBeamScanningElectronMicroscopy" + "@id": "bts:JE" }, { - "@id": "bts:ForsterResonanceEnergyTransfer" + "@id": "bts:JM" }, { - "@id": "bts:FourierTransformIonCyclotronResonanceMassSpectrometry" + "@id": "bts:JO" }, { - "@id": "bts:Fourier-TransformInfraredSpectroscopy" + "@id": "bts:JP" }, { - "@id": "bts:GasChromatographyMassSpectrometry" + "@id": "bts:KE" }, { - "@id": "bts:GelatinZymography" + "@id": "bts:KG" }, { - "@id": "bts:Genotyping" + "@id": "bts:KH" }, { - "@id": "bts:GlobalChromatinProfiling" + "@id": "bts:KI" }, { - "@id": "bts:GlobalRun-OnSequencing" + "@id": "bts:KM" }, { - "@id": "bts:GraphiteFurnaceAtomicAbsorptionSpectrometry" + "@id": "bts:KN" }, { - "@id": "bts:HL-Chip" + "@id": "bts:KP" }, { - "@id": "bts:HPLC-MSMS" + "@id": "bts:KR" }, { - "@id": "bts:HematoxylinandEosinStainingMethod" + "@id": "bts:KW" }, { - "@id": "bts:Hi-C" + "@id": "bts:KY" }, { - "@id": "bts:HiChIP" + "@id": "bts:KZ" }, { - "@id": "bts:HighThroughputScreening" + "@id": "bts:LA" }, { - "@id": "bts:High-ContentScreen" + "@id": "bts:LB" }, { - "@id": "bts:Hydrogels" + "@id": "bts:LC" }, { - "@id": "bts:HydrophilicInteractionChromatography" + "@id": "bts:LI" }, { - "@id": "bts:ImageCytometry" + "@id": "bts:LK" }, { - "@id": "bts:Imaging" + "@id": "bts:LR" }, { - "@id": "bts:ImmobilizedMetalAffinityChromatography" + "@id": "bts:LS" }, { - "@id": "bts:ImmunoFISH" + "@id": "bts:LT" }, { - "@id": "bts:Immunoassay" + "@id": "bts:LU" }, { - "@id": "bts:Immunocytochemistry" + "@id": "bts:LV" }, { - "@id": "bts:ImmunohistochemistryStainingMethod" + "@id": "bts:LY" }, { - "@id": "bts:Immunoprecipitation" + "@id": "bts:MA" }, { - "@id": "bts:InSituHybridization" + "@id": "bts:MC" }, { - "@id": "bts:InVitroCellKillingAssay" + "@id": "bts:MD" }, { - "@id": "bts:InVitroModel" + "@id": "bts:ME" }, { - "@id": "bts:InVitroSelection" + "@id": "bts:MF" }, { - "@id": "bts:InVitroTranslation" + "@id": "bts:MG" }, { - "@id": "bts:InVivoBioluminescence" + "@id": "bts:MH" }, { - "@id": "bts:In-CellWesternAssay" + "@id": "bts:MK" }, { - "@id": "bts:Inductively-CoupledPlasmaMassSpectrometry" + "@id": "bts:ML" }, { - "@id": "bts:InterferenceReflectionMicroscopy" + "@id": "bts:MM" }, { - "@id": "bts:IntravitalMicroscopy" + "@id": "bts:MN" }, { - "@id": "bts:InvasionAssay" + "@id": "bts:MO" }, { - "@id": "bts:Karyotyping" + "@id": "bts:MP" }, { - "@id": "bts:Knife-EdgeScanningMicroscopy" + "@id": "bts:MQ" }, { - "@id": "bts:L1000mRNAProfilingAssay" + "@id": "bts:MR" }, { - "@id": "bts:LatticeLightSheetMicroscopy" + "@id": "bts:MS" }, { - "@id": "bts:LiquidChromatographyMassSpectrometry" + "@id": "bts:MT" }, { - "@id": "bts:LiquidChromatography/TandemMassSpectrometry" + "@id": "bts:MU" }, { - "@id": "bts:Low-VacuumScanningElectronMicroscopy" + "@id": "bts:MV" }, { - "@id": "bts:LuciferaseReporterAssay" + "@id": "bts:MW" }, { - "@id": "bts:LuminescentCellViabilityAssay" + "@id": "bts:MX" }, { - "@id": "bts:MALDI-TOFMassSpectrometry" + "@id": "bts:MY" }, { - "@id": "bts:MEMACellGrowthAssay" + "@id": "bts:MZ" }, { - "@id": "bts:MNase-Seq" + "@id": "bts:NA" }, { - "@id": "bts:MULTI-Seq" + "@id": "bts:NC" }, { - "@id": "bts:MacrophagePolarizationAssay" + "@id": "bts:NE" }, { - "@id": "bts:MagneticResonanceImaging" + "@id": "bts:NF" }, { - "@id": "bts:MagneticTweezers" + "@id": "bts:NG" }, { - "@id": "bts:MagneticTwistingCytometry" + "@id": "bts:NI" }, { - "@id": "bts:MagneticallyActivatedCellSorting" + "@id": "bts:NL" }, { - "@id": "bts:MammosphereFormationAssay" + "@id": "bts:NO" }, { - "@id": "bts:MassCytometry" + "@id": "bts:NP" }, { - "@id": "bts:MassSpectrometry" + "@id": "bts:NR" }, { - "@id": "bts:MathematicalModeling" + "@id": "bts:NU" }, { - "@id": "bts:MeDIP" + "@id": "bts:NZ" }, { - "@id": "bts:MeRIP-Seq" + "@id": "bts:OM" }, { - "@id": "bts:MethylBindingDomainSequencing" + "@id": "bts:PA" }, { - "@id": "bts:Methylation-SpecificPCR" + "@id": "bts:PE" }, { - "@id": "bts:Micro-computedTomography" + "@id": "bts:PF" }, { - "@id": "bts:MicroRNAExpressionArray" + "@id": "bts:PG" }, { - "@id": "bts:MicroRNASequencing" + "@id": "bts:PH" }, { - "@id": "bts:MicrocontactPrinting" + "@id": "bts:PK" }, { - "@id": "bts:Microfluidics" + "@id": "bts:PL" }, { - "@id": "bts:MicropipetteAdhesionAssay" + "@id": "bts:PM" }, { - "@id": "bts:MicropipetteAspiration" + "@id": "bts:PN" }, { - "@id": "bts:Microscopy" + "@id": "bts:PR" }, { - "@id": "bts:MigrationAssay" + "@id": "bts:PS" }, { - "@id": "bts:Mint-ChIP" + "@id": "bts:PT" }, { - 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- "sms:displayName": "Transwell Assay", + "sms:displayName": "3D Cell Culture", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UPLC-MSMS", + "@id": "bts:4C", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UPLC-MSMS", + "rdfs:label": "4C", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211466,16 +210623,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UPLC-MSMS", + "sms:displayName": "4C", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UVPhotocrosslinking", + "@id": "bts:5C", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UVPhotocrosslinking", + "rdfs:label": "5C", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211492,16 +210652,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UV Photocrosslinking", + "sms:displayName": "5C", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VibrationalSpectroscopy", + "@id": "bts:ATAC-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VibrationalSpectroscopy", + "rdfs:label": "ATAC-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211518,16 +210681,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Vibrational Spectroscopy", + "sms:displayName": "ATAC-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VirusPlaqueAssay", + "@id": "bts:ATPBioluminescenceAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VirusPlaqueAssay", + "rdfs:label": "ATPBioluminescenceAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211544,16 +210710,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Virus Plaque Assay", + "sms:displayName": "ATP Bioluminescence Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VonKossaStaining", + "@id": "bts:AffinityPurificationMassSpectrometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VonKossaStaining", + "rdfs:label": "AffinityPurificationMassSpectrometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211570,16 +210739,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Von Kossa Staining", + "sms:displayName": "Affinity Purification Mass Spectrometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WesternBlotting", + "@id": "bts:Allograft", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WesternBlotting", + "rdfs:label": "Allograft", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211596,16 +210768,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Western Blotting", + "sms:displayName": "Allograft", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeExomeSequencing", + "@id": "bts:AmpliconSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeExomeSequencing", + "rdfs:label": "AmpliconSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211622,16 +210797,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Exome Sequencing", + "sms:displayName": "Amplicon Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeGenomeBisulfiteSequencing", + "@id": "bts:AngiogenesisAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeGenomeBisulfiteSequencing", + "rdfs:label": "AngiogenesisAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211648,18 +210826,18 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Genome Bisulfite Sequencing", + "sms:displayName": "Angiogenesis Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeGenomeSequencing", + "@id": "bts:ApoptosisAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeGenomeSequencing", + "rdfs:label": "ApoptosisAssay", "rdfs:subClassOf": [ { - "@id": "bts:ToolTopic" + "@id": "bts:MeasurementTechnique" }, { "@id": "bts:DatasetAssay" @@ -211677,16 +210855,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Genome Sequencing", + "sms:displayName": "Apoptosis Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WidefieldFluorescenceMicroscopy", + "@id": "bts:AtomicAbsorptionSpectrophotometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WidefieldFluorescenceMicroscopy", + "rdfs:label": "AtomicAbsorptionSpectrophotometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211703,16 +210884,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Widefield Fluorescence Microscopy", + "sms:displayName": "Atomic Absorption Spectrophotometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Wound-HealingAssay", + "@id": "bts:AtomicAbsorptionSpectroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Wound-HealingAssay", + "rdfs:label": "AtomicAbsorptionSpectroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211729,16 +210913,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Wound-Healing Assay", + "sms:displayName": "Atomic Absorption Spectroscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayCrystallography", + "@id": "bts:AtomicForceMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayCrystallography", + "rdfs:label": "AtomicForceMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211755,16 +210942,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Crystallography", + "sms:displayName": "Atomic Force Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayDiffraction", + "@id": "bts:Autoradiography", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayDiffraction", + "rdfs:label": "Autoradiography", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211781,16 +210971,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Diffraction", + "sms:displayName": "Autoradiography", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayMicro-ComputedTomography", + "@id": "bts:Barcode-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayMicro-ComputedTomography", + "rdfs:label": "Barcode-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211807,16 +211000,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Micro-Computed Tomography", + "sms:displayName": "Barcode-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CDNAArray", + "@id": "bts:BicinchoninicAcidAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CDNAArray", + "rdfs:label": "BicinchoninicAcidAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211833,16 +211029,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "cDNA Array", + "sms:displayName": "Bicinchoninic Acid Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ECLIP-Seq", + "@id": "bts:BindingAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ECLIP-Seq", + "rdfs:label": "BindingAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211859,16 +211058,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "eCLIP-Seq", + "sms:displayName": "Binding Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MRNASequencing", + "@id": "bts:Bio-LayerInterferometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MRNASequencing", + "rdfs:label": "Bio-LayerInterferometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211885,16 +211087,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "mRNA Sequencing", + "sms:displayName": "Bio-Layer Interferometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:QPCR", + "@id": "bts:BioluminescenceImaging", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "QPCR", + "rdfs:label": "BioluminescenceImaging", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211911,16 +211116,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "qPCR", + "sms:displayName": "Bioluminescence Imaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScCGI-seq", + "@id": "bts:BisulfiteSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScCGI-seq", + "rdfs:label": "BisulfiteSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211937,16 +211145,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scCGI-seq", + "sms:displayName": "Bisulfite Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScNT-Seq", + "@id": "bts:BrightfieldMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScNT-Seq", + "rdfs:label": "BrightfieldMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211963,16 +211174,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scNT-Seq", + "sms:displayName": "Brightfield Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScSLAM-seq", + "@id": "bts:BrillouinMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScSLAM-seq", + "rdfs:label": "BrillouinMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211989,16 +211203,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scSLAM-seq", + "sms:displayName": "Brillouin Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SeqFISH", + "@id": "bts:CASFISH", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SeqFISH", + "rdfs:label": "CASFISH", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212015,16 +211232,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "seqFISH", + "sms:displayName": "CASFISH", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ShRNA", + "@id": "bts:CITE-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ShRNA", + "rdfs:label": "CITE-seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212041,16 +211261,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "shRNA", + "sms:displayName": "CITE-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SiRNA", + "@id": "bts:CLIP-qPCR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SiRNA", + "rdfs:label": "CLIP-qPCR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212067,16 +211290,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "siRNA", + "sms:displayName": "CLIP-qPCR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SmFISH", + "@id": "bts:CRISPR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SmFISH", + "rdfs:label": "CRISPR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212093,16 +211319,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "smFISH", + "sms:displayName": "CRISPR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SmRNA-seq", + "@id": "bts:CUT&RUN", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SmRNA-seq", + "rdfs:label": "CUT&RUN", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212119,16 +211348,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "smRNA-seq", + "sms:displayName": "CUT&RUN", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SnRNA-seq", + "@id": "bts:CUT&Tag-Sequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SnRNA-seq", + "rdfs:label": "CUT&Tag-Sequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212145,16 +211377,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "snRNA-seq", + "sms:displayName": "CUT&Tag-Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:IsothermalTitrationCalorimetry", + "@id": "bts:CellAdhesionAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "IsothermalTitrationCalorimetry", + "rdfs:label": "CellAdhesionAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212171,16 +211406,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Isothermal Titration Calorimetry", + "sms:displayName": "Cell Adhesion Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SuspendedMicrochannelResonator", + "@id": "bts:CellProliferationAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SuspendedMicrochannelResonator", + "rdfs:label": "CellProliferationAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212197,16 +211435,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Suspended Microchannel Resonator", + "sms:displayName": "Cell Proliferation Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:10xMultiome", + "@id": "bts:CellViabilityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "10xMultiome", + "rdfs:label": "CellViabilityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212223,16 +211464,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "10x Multiome", + "sms:displayName": "Cell Viability Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VisiumSpatialGeneExpression", + "@id": "bts:Cell-spreadingAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VisiumSpatialGeneExpression", + "rdfs:label": "Cell-spreadingAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212249,16 +211493,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Visium Spatial Gene Expression", + "sms:displayName": "Cell-spreading Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:AntitumorDrugScreeningAssay", + "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AntitumorDrugScreeningAssay", + "rdfs:label": "CellTiter-GloLuminescentCellViabilityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212275,16 +211522,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Antitumor Drug Screening Assay", + "sms:displayName": "CellTiter-Glo Luminescent Cell Viability Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BioelectrochemicalAnalysis", + "@id": "bts:CerenkovLuminescenceImaging", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BioelectrochemicalAnalysis", + "rdfs:label": "CerenkovLuminescenceImaging", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212301,16 +211551,22 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Bioelectrochemical Analysis", + "sms:displayName": "Cerenkov Luminescence Imaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChimericAntigenReceptorT-CellTherapy", + "@id": "bts:ChIA-PET", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ChimericAntigenReceptorT-CellTherapy", + "rdfs:label": "ChIA-PET", "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibraryStrategy" + }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212327,16 +211583,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Chimeric Antigen Receptor T-Cell Therapy", + "sms:displayName": "ChIA-PET", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CellCycleAssay", + "@id": "bts:ChIP-PCR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CellCycleAssay", + "rdfs:label": "ChIP-PCR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212353,16 +211612,22 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell Cycle Assay", + "sms:displayName": "ChIP-PCR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ClonalityAnalysis", + "@id": "bts:ChIP-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ClonalityAnalysis", + "rdfs:label": "ChIP-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibraryStrategy" + }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212379,16 +211644,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Clonality Analysis", + "sms:displayName": "ChIP-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ComparativeGenomicHybridization", + "@id": "bts:ChIP-qPCRassay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ComparativeGenomicHybridization", + "rdfs:label": "ChIP-qPCRassay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212405,16 +211673,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Comparative Genomic Hybridization", + "sms:displayName": "ChIP-qPCR assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cryo-ElectronMicroscopy", + "@id": "bts:ChemiluminescentAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cryo-ElectronMicroscopy", + "rdfs:label": "ChemiluminescentAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212431,16 +211702,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cryo-Electron Microscopy", + "sms:displayName": "Chemiluminescent Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cryo-ElectronTomography", + "@id": "bts:ChemotaxisAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cryo-ElectronTomography", + "rdfs:label": "ChemotaxisAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212457,16 +211731,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cryo-Electron Tomography", + "sms:displayName": "Chemotaxis Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DataIntegration", + "@id": "bts:CircularDichroismSpectroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "DataIntegration", + "rdfs:label": "CircularDichroismSpectroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212483,16 +211760,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Data Integration", + "sms:displayName": "Circular Dichroism Spectroscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Field-EmissionScanningElectronMicroscopy", + "@id": "bts:Co-Immunoprecipitation", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Field-EmissionScanningElectronMicroscopy", + "rdfs:label": "Co-Immunoprecipitation", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212509,16 +211789,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Field-Emission Scanning Electron Microscopy", + "sms:displayName": "Co-Immunoprecipitation", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Label-freeProteinQuantificationbyLC/MS", + "@id": "bts:Co-cultureAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Label-freeProteinQuantificationbyLC/MS", + "rdfs:label": "Co-cultureAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212535,16 +211818,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Label-free Protein Quantification by LC/MS", + "sms:displayName": "Co-culture Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MetaboliteProfilingAssay", + "@id": "bts:Collision-InducedDissociation", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MetaboliteProfilingAssay", + "rdfs:label": "Collision-InducedDissociation", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212561,16 +211847,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Metabolite Profiling Assay", + "sms:displayName": "Collision-Induced Dissociation", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ReporterGeneAssay", + "@id": "bts:ColorimetricCellViabilityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ReporterGeneAssay", + "rdfs:label": "ColorimetricCellViabilityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212587,16 +211876,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Reporter Gene Assay", + "sms:displayName": "Colorimetric Cell Viability Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Single-MoleculeLocalizationMicroscopy", + "@id": "bts:ComputationalModeling", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Single-MoleculeLocalizationMicroscopy", + "rdfs:label": "ComputationalModeling", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212613,16 +211905,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Single-Molecule Localization Microscopy", + "sms:displayName": "Computational Modeling", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Synthesis", + "@id": "bts:ComputationalTool", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Synthesis", + "rdfs:label": "ComputationalTool", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212639,16 +211934,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synthesis", + "sms:displayName": "Computational Tool", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TargetedTherapyAgent", + "@id": "bts:ComputedTomography", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TargetedTherapyAgent", + "rdfs:label": "ComputedTomography", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212665,16 +211963,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Targeted Therapy Agent", + "sms:displayName": "Computed Tomography", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TrichromeStainingMethod", + "@id": "bts:ConfocalMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TrichromeStainingMethod", + "rdfs:label": "ConfocalMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212691,16 +211992,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Trichrome Staining Method", + "sms:displayName": "Confocal Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UltrasoundImaging", + "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UltrasoundImaging", + "rdfs:label": "ConfocalReflectanceQuantitativePhaseMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212717,16 +212021,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Ultrasound Imaging", + "sms:displayName": "Confocal Reflectance Quantitative Phase Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TranscriptionprofilingbyNanoString", + "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TranscriptionprofilingbyNanoString", + "rdfs:label": "Cross-LinkingImmunoprecipitationHigh-throughputSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212743,16 +212050,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transcription profiling by NanoString", + "sms:displayName": "Cross-Linking Immunoprecipitation High-throughput Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:AlcianBlueStainingMethod", + "@id": "bts:Cross-LinkingMassSpectrometry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AlcianBlueStainingMethod", + "rdfs:label": "Cross-LinkingMassSpectrometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212769,16 +212079,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Alcian Blue Staining Method", + "sms:displayName": "Cross-Linking Mass Spectrometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ArtificialIntelligence", + "@id": "bts:CyclicImmunofluorescence", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ArtificialIntelligence", + "rdfs:label": "CyclicImmunofluorescence", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212795,16 +212108,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Artificial Intelligence", + "sms:displayName": "Cyclic Immunofluorescence", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CellCulture", + "@id": "bts:CytochemicalStain", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CellCulture", + "rdfs:label": "CytochemicalStain", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212821,16 +212137,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell Culture", + "sms:displayName": "Cytochemical Stain", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ClinicalStudy", + "@id": "bts:CytokineExpressionProfile", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ClinicalStudy", + "rdfs:label": "CytokineExpressionProfile", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212847,16 +212166,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Clinical Study", + "sms:displayName": "Cytokine Expression Profile", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cell-freeCirculatingTumorDNAAssay", + "@id": "bts:CytometricBeadArrayAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cell-freeCirculatingTumorDNAAssay", + "rdfs:label": "CytometricBeadArrayAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212873,16 +212195,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell-free Circulating Tumor DNA Assay", + "sms:displayName": "Cytometric Bead Array Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Co-ImmunoprecipitationMassSpectrometry", + "@id": "bts:CytotoxicityAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Co-ImmunoprecipitationMassSpectrometry", + "rdfs:label": "CytotoxicityAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212899,16 +212224,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Co-Immunoprecipitation Mass Spectrometry", + "sms:displayName": "Cytotoxicity Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DeepLearning", + "@id": "bts:DBiT-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "DeepLearning", + "rdfs:label": "DBiT-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212925,16 +212253,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Deep Learning", + "sms:displayName": "DBiT-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:GeneOntologyEnrichmentAnalysis", + "@id": "bts:DNAGene-ExpressionMicroarray", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "GeneOntologyEnrichmentAnalysis", + "rdfs:label": "DNAGene-ExpressionMicroarray", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212951,16 +212282,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Gene Ontology Enrichment Analysis", + "sms:displayName": "DNA Gene-Expression Microarray", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:GeneSetEnrichmentAnalysis", + "@id": "bts:DNAMethylationArray", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "GeneSetEnrichmentAnalysis", + "rdfs:label": "DNAMethylationArray", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -212977,16 +212311,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Gene Set Enrichment Analysis", + "sms:displayName": "DNA Methylation Array", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:GeneSilencing", + "@id": "bts:DNASequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "GeneSilencing", + "rdfs:label": "DNASequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213003,16 +212340,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Gene Silencing", + "sms:displayName": "DNA Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture", + "@id": "bts:DNase-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture", + "rdfs:label": "DNase-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213029,16 +212369,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture", + "sms:displayName": "DNase-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingMassCytometry", + "@id": "bts:DRIP-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ImagingMassCytometry", + "rdfs:label": "DRIP-seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213055,16 +212398,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Mass Cytometry", + "sms:displayName": "DRIP-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImmunofluorescentStainingMethod", + "@id": "bts:DarkFieldMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ImmunofluorescentStainingMethod", + "rdfs:label": "DarkFieldMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213081,16 +212427,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Immunofluorescent Staining Method", + "sms:displayName": "Dark Field Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ViralTransduction", + "@id": "bts:DeepMutationalScanning", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ViralTransduction", + "rdfs:label": "DeepMutationalScanning", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213107,16 +212456,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Viral Transduction", + "sms:displayName": "Deep Mutational Scanning", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:MetastaticColonizationAssay", + "@id": "bts:DesorptionElectrosprayIonization", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MetastaticColonizationAssay", + "rdfs:label": "DesorptionElectrosprayIonization", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213133,18 +212485,18 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Metastatic Colonization Assay", + "sms:displayName": "Desorption Electrospray Ionization", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PhylogeneticAnalysis", + "@id": "bts:DideoxyChainTerminationDNASequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PhylogeneticAnalysis", + "rdfs:label": "DideoxyChainTerminationDNASequencing", "rdfs:subClassOf": [ { - "@id": "bts:ToolOperation" + "@id": "bts:MeasurementTechnique" }, { "@id": "bts:DatasetAssay" @@ -213162,16 +212514,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Phylogenetic Analysis", + "sms:displayName": "Dideoxy Chain Termination DNA Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PicrosiriusStaining", + "@id": "bts:DifferentialInterferenceContrastMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PicrosiriusStaining", + "rdfs:label": "DifferentialInterferenceContrastMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213188,16 +212543,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Picrosirius Staining", + "sms:displayName": "Differential Interference Contrast Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScratchAssay", + "@id": "bts:DifferentialScanningFluorimetry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScratchAssay", + "rdfs:label": "DifferentialScanningFluorimetry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213214,16 +212572,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Scratch Assay", + "sms:displayName": "Differential Scanning Fluorimetry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:StructuralVariantAnalysis", + "@id": "bts:DiffusionWeightedImaging", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "StructuralVariantAnalysis", + "rdfs:label": "DiffusionWeightedImaging", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213240,16 +212601,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Structural Variant Analysis", + "sms:displayName": "Diffusion Weighted Imaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SurvivalAnalysis", + "@id": "bts:DirectLong-ReadRNASequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SurvivalAnalysis", + "rdfs:label": "DirectLong-ReadRNASequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213266,16 +212630,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Survival Analysis", + "sms:displayName": "Direct Long-Read RNA Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TargetedErrorCorrectionSequencing", + "@id": "bts:Drop-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TargetedErrorCorrectionSequencing", + "rdfs:label": "Drop-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -213292,16 +212659,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Targeted Error Correction Sequencing", + "sms:displayName": "Drop-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Tuba-Seq", + "@id": "bts:DropletDigitalPCR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Tuba-Seq", + "rdfs:label": "DropletDigitalPCR", 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"@id": "bts:PublicationViewKey" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ToolViewKey" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ResourceTitle" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:ResourceLink" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Oral Cavity Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:OralCavitySquamousCellCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "OralCavitySquamousCellCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:ResourceDoi" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ResourceTopic" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ResourceActivityType" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:ResourcePrimaryFormat" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Oral Cavity Squamous Cell Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:OropharyngealNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "OropharyngealNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:ResourceIntendedUse" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ResourcePrimaryAudience" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ResourceEducationalLevel" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:ResourceDescription" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Oropharyngeal Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Osteosarcoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Osteosarcoma", + "rdfs:subClassOf": [ { - "@id": "bts:ResourceOriginInstitution" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ResourceLanguage" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ResourceContributors" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:ResourceSecondaryTopic" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Osteosarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:OvarianAdenosarcoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "OvarianAdenosarcoma", + "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ResourceUseRequirements" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ResourceAlias" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:ResourceInternalIdentifier" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Ovarian Adenosarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:OvarianCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "OvarianCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:ResourceMediaAccessibility" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ResourceAccessHazard" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ResourceDatasetAlias" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:ResourceToolLink" + "@id": "bts:DSPDatasetTumorType" } ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Ovarian Carcinoma", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:EducationalResourceId", + "@id": "bts:OvarianNeoplasm", "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "EducationalResourceId", + "rdfs:comment": "TBD", + "rdfs:label": "OvarianNeoplasm", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "EducationalResource_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] + "sms:displayName": "Ovarian Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceTitle", + "@id": "bts:OvarianSerousAdenocarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "Title of the item.", - "rdfs:label": "ResourceTitle", + "rdfs:comment": "TBD", + "rdfs:label": "OvarianSerousAdenocarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Title", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] + "sms:displayName": "Ovarian Serous Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceLink", + "@id": "bts:Pan-cancer", "@type": "rdfs:Class", - "rdfs:comment": "The URL that links to the item.", - "rdfs:label": "ResourceLink", + "rdfs:comment": "TBD", + "rdfs:label": "Pan-cancer", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Link", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] + "sms:displayName": "Pan-cancer", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceDoi", + "@id": "bts:PancreaticAdenocarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "The Digital Object Identifier (DOI) associated with the educational resource.", - "rdfs:label": "ResourceDoi", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticAdenocarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Doi", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] + "sms:displayName": "Pancreatic Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceTopic", + "@id": "bts:PancreaticCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "General topic or research context of the item. If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceTopic", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:ComputationalModelDevelopment" - }, + "sms:displayName": "Pancreatic Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PancreaticDuctalAdenocarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticDuctalAdenocarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:ComputationalResource" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Diversity/Equity/Inclusion" + "@id": "bts:FileTumorType" }, { - "@id": "bts:DrugResistance/Sensitivity" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Epigenetics" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pancreatic Ductal Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PancreaticNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:Evolution" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ExperimentalModelDevelopment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Heterogeneity" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Immunotherapy" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pancreatic Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PancreaticNeuroendocrineCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PancreaticNeuroendocrineCarcinoma", + "rdfs:subClassOf": [ { - 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"@id": "bts:Outreach" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:PlatformDevelopment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:TrainingMaterial" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:TumorProgression" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pheochromocytoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PituitaryGlandAdenoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PituitaryGlandAdenoma", + "rdfs:subClassOf": [ { - "@id": "bts:Tumor-Immune" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:ComputerScience" + "@id": "bts:FileTumorType" }, { - "@id": "bts:EnvironmentalScience" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:InformationScience" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pituitary Gland Adenoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlasmablasticLymphoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlasmablasticLymphoma", + "rdfs:subClassOf": [ { - "@id": "bts:EducationalTechnology" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Anatomy/Physiology" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Biology" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Ecology" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plasmablastic Lymphoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Plasmacytoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Plasmacytoma", + "rdfs:subClassOf": [ { - "@id": "bts:Genetics" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Nutrition" + "@id": "bts:FileTumorType" }, { - "@id": "bts:MeasurementandData" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:StatisticsandProbability" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plasmacytoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlexiformSchwannoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlexiformSchwannoma", + "rdfs:subClassOf": [ { - "@id": "bts:Chemistry" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Physics" + "@id": "bts:FileTumorType" }, { - "@id": "bts:SystemsBiology" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:PatientAdvocacy" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Topic", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plexiform Schwannoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceActivityType", + "@id": "bts:PrecursorB-celllymphoblasticleukemia", "@type": "rdfs:Class", - "rdfs:comment": "The type(s) of activities for which the item is intended to be used. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceActivityType", + "rdfs:comment": "TBD", + "rdfs:label": "PrecursorB-celllymphoblasticleukemia", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Activity/Lab" - }, - { - "@id": "bts:Assessment" - }, + "sms:displayName": "Precursor B-cell lymphoblastic leukemia", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PrimaryCentralNervousSystemLymphoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PrimaryCentralNervousSystemLymphoma", + "rdfs:subClassOf": [ { - "@id": "bts:CaseStudy" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:DataSet" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Diagram/Illustration" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:FullCourse" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Primary Central Nervous System Lymphoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PrimaryMyelofibrosis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PrimaryMyelofibrosis", + "rdfs:subClassOf": [ { - "@id": "bts:Game" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Homework/Assignment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Interactive" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Lecture" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Primary Myelofibrosis", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProstateAdenocarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ProstateAdenocarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:LectureNotes" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Lesson" + "@id": "bts:FileTumorType" }, { - "@id": "bts:LessonPlan" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Module" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Prostate Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProstateCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ProstateCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:PrimarySource" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Reading" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Simulation" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:StudentGuide" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Prostate Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProstateNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ProstateNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:Syllabus" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Teaching/LearningStrategy" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Textbook" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:UnitofStudy" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Activity Type", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Prostate Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourcePrimaryFormat", + "@id": "bts:RectalAdenocarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "The media type(s) of the item (video, audio, text, etc.) Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourcePrimaryFormat", + "rdfs:comment": "TBD", + "rdfs:label": "RectalAdenocarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Audio" - }, - { - "@id": "bts:Braille/BNF" - }, + "sms:displayName": "Rectal Adenocarcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:RenalCellCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "RenalCellCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Downloadabledocs" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:EBook" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Graphics/Photos" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Interactive" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Renal Cell Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Retinoblastoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Retinoblastoma", + "rdfs:subClassOf": [ { - "@id": "bts:Mobile" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Text/HTML" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Video" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Other" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Primary Format", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Retinoblastoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceIntendedUse", + "@id": "bts:Rhabdomyosarcoma", "@type": "rdfs:Class", - "rdfs:comment": "The purpose of the material for education. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceIntendedUse", + "rdfs:comment": "TBD", + "rdfs:label": "Rhabdomyosarcoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ + "sms:displayName": "Rhabdomyosarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Rosette-FormingGlioneuronalTumor", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Rosette-FormingGlioneuronalTumor", + "rdfs:subClassOf": [ { - "@id": "bts:Curriculum/Instruction" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Assessment" + "@id": "bts:FileTumorType" }, { - "@id": "bts:ProfessionalDevelopment" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Other" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Intended Use", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Rosette-Forming Glioneuronal Tumor", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourcePrimaryAudience", + "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "The intended end user audience for the resource. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourcePrimaryAudience", + "rdfs:comment": "TBD", + "rdfs:label": "SalivaryGlandAdenoidCysticCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ + "sms:displayName": "Salivary Gland Adenoid Cystic Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Sarcoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Sarcoma", + "rdfs:subClassOf": [ { - "@id": "bts:Student" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Teacher" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Administrator" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Parent" + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Schwannoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Schwannoma", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Professor" + "@id": "bts:FileTumorType" }, { - "@id": "bts:GeneralAudience" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Other" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Primary Audience", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Schwannoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceEducationalLevel", + "@id": "bts:SerousTubalIntraepithelialCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceEducationalLevel", + "rdfs:comment": "TBD", + "rdfs:label": "SerousTubalIntraepithelialCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Preschool" - }, - { - "@id": "bts:LowerPrimary" - }, + "sms:displayName": "Serous Tubal Intraepithelial Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SinonasalSquamousCellCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SinonasalSquamousCellCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:UpperPrimary" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:MiddleSchool" + "@id": "bts:FileTumorType" }, { - "@id": "bts:HighSchool" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:CommunityCollege/LowerDivision" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sinonasal Squamous Cell Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SkinCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SkinCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:College/UpperDivision" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Graduate/Profession" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Career/Technical" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:AdultEducation" + "@id": "bts:DSPDatasetTumorType" } ], - "sms:displayName": "Resource Educational Level", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceDescription", + "@id": "bts:SkinNeoplasm", "@type": "rdfs:Class", - "rdfs:comment": "Abstract or summary of the item.", - "rdfs:label": "ResourceDescription", + "rdfs:comment": "TBD", + "rdfs:label": "SkinNeoplasm", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Description", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] + "sms:displayName": "Skin Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceOriginInstitution", + "@id": "bts:SquamousCellCarcinoma", "@type": "rdfs:Class", - "rdfs:comment": "Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceOriginInstitution", + "rdfs:comment": "TBD", + "rdfs:label": "SquamousCellCarcinoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Origin Institution", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "sms:displayName": "Squamous Cell Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceLanguage", + "@id": "bts:SynovialSarcoma", "@type": "rdfs:Class", - "rdfs:comment": "Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceLanguage", + "rdfs:comment": "TBD", + "rdfs:label": "SynovialSarcoma", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Aa" - }, - { - "@id": "bts:Ab" - }, + "sms:displayName": "Synovial Sarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:TAcuteLymphoblasticLeukemia", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "TAcuteLymphoblasticLeukemia", + "rdfs:subClassOf": [ { - "@id": "bts:Ae" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Af" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Ak" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Am" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T Acute Lymphoblastic Leukemia", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T-CellLymphoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T-CellLymphoma", + "rdfs:subClassOf": [ { - "@id": "bts:An" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ar" + "@id": "bts:FileTumorType" }, { - "@id": "bts:As" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Av" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T-Cell Lymphoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Teratoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Teratoma", + "rdfs:subClassOf": [ { - "@id": "bts:Ay" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Az" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Ba" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Be" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Teratoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:TesticularEmbryonalCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "TesticularEmbryonalCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Bg" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Bh" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Bi" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Bm" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Testicular Embryonal Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ThyroidGlandAnaplasticCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ThyroidGlandAnaplasticCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Bn" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Bo" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Br" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Bs" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Thyroid Gland Anaplastic Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ThyroidGlandCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ThyroidGlandCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Ca" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ce" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Ch" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Co" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Thyroid Gland Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures", + "rdfs:subClassOf": [ { - "@id": "bts:Cr" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Cs" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Cu" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Cv" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UrothelialCarcinoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UrothelialCarcinoma", + "rdfs:subClassOf": [ { - "@id": "bts:Cy" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Da" + "@id": "bts:FileTumorType" }, { - "@id": "bts:De" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Dv" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Urothelial Carcinoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UterineAdenosarcoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UterineAdenosarcoma", + "rdfs:subClassOf": [ { - "@id": "bts:Dz" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ee" + "@id": "bts:FileTumorType" }, { - "@id": "bts:El" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:En" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Uterine Adenosarcoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UvealMelanoma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UvealMelanoma", + "rdfs:subClassOf": [ { - "@id": "bts:Eo" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Es" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Et" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Eu" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Uveal Melanoma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:UvealNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UvealNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:Fa" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ff" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Fi" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Fj" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Uveal Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VascularNeoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VascularNeoplasm", + "rdfs:subClassOf": [ { - "@id": "bts:Fo" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Fr" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Fy" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Ga" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Vascular Neoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Not-Applicable", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Not-Applicable", + "rdfs:subClassOf": [ { - "@id": "bts:Gd" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Gl" + "@id": "bts:FileTumorType" }, { - "@id": "bts:Gn" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Gu" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Not-Applicable", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlexiformNeurofibroma", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlexiformNeurofibroma", + "rdfs:subClassOf": [ { - "@id": "bts:Gv" + "@id": "bts:DatasetTumorType" }, { - "@id": "bts:Ha" + "@id": "bts:FileTumorType" }, { - "@id": "bts:He" + "@id": "bts:PublicationTumorType" }, { - "@id": "bts:Hi" - }, + "@id": "bts:DSPDatasetTumorType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plexiform Neurofibroma", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DatasetTissue", + "@type": "rdfs:Class", + "rdfs:comment": "Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.", + "rdfs:label": "DatasetTissue", + "rdfs:subClassOf": [ { - "@id": "bts:Ho" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Hr" + "@id": "bts:Gonad" }, { - "@id": "bts:Ht" + "@id": "bts:AbdominalEsophagus" }, { - "@id": "bts:Hu" + "@id": "bts:AdiposeTissue" }, { - "@id": "bts:Hy" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:Hz" + "@id": "bts:Alveolus" }, { - "@id": "bts:Ia" + "@id": "bts:Aorta" }, { - "@id": "bts:Id" + "@id": "bts:Artery" }, { - "@id": "bts:Ie" + "@id": "bts:AscendingColon" }, { - "@id": "bts:Ig" + "@id": "bts:BileDuct" }, { - "@id": "bts:Ii" + "@id": "bts:Bladder" }, { - "@id": "bts:Ik" + "@id": "bts:Blood" }, { - "@id": "bts:Io" + "@id": "bts:BloodVessel" }, { - "@id": "bts:Is" + "@id": "bts:Bone" }, { - "@id": "bts:It" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:Iu" + "@id": "bts:Brain" }, { - "@id": "bts:Ja" + "@id": "bts:Breast" }, { - "@id": "bts:Jv" + "@id": "bts:Caecum" }, { - "@id": "bts:Ka" + "@id": "bts:Cancer-AssociatedFibroblast" }, { - "@id": "bts:Kg" + "@id": "bts:Cardia" }, { - "@id": "bts:Ki" + "@id": "bts:Cartilage" }, { - "@id": "bts:Kj" + "@id": "bts:CervixUteri" }, { - "@id": "bts:Kk" + "@id": "bts:Choroid" }, { - "@id": "bts:Kl" + "@id": "bts:Colon" }, { - "@id": "bts:Km" + "@id": "bts:ConnectiveandSoftTissue" }, { - "@id": "bts:Kn" + "@id": "bts:Cornea" }, { - "@id": "bts:Ko" + "@id": "bts:Duodenum" }, { - "@id": "bts:Kr" + "@id": "bts:Ear" }, { - "@id": "bts:Ks" + "@id": "bts:Embryo" }, { - "@id": "bts:Ku" + "@id": "bts:EmbryonicHeart" }, { - "@id": "bts:Kv" + "@id": "bts:Endocervix" }, { - "@id": "bts:Kw" + "@id": "bts:Endometrium" }, { - "@id": "bts:Ky" + "@id": "bts:Endothelium" }, { - "@id": "bts:La" + "@id": "bts:Epithelium" }, { - "@id": "bts:Lb" + "@id": "bts:Esophagus" }, { - "@id": "bts:Lg" + "@id": "bts:Eye" }, { - "@id": "bts:Li" + "@id": "bts:FallopianTube" }, { - "@id": "bts:Ln" + "@id": "bts:Foreskin" }, { - "@id": "bts:Lo" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:Lt" + "@id": "bts:GastroesophagealJunction" }, { - "@id": "bts:Lu" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:Lv" + "@id": "bts:Genitourinary" }, { - "@id": "bts:Mg" + "@id": "bts:HairFollicle" }, { - "@id": "bts:Mh" + "@id": "bts:HeadandNeck" }, { - "@id": "bts:Mi" + "@id": "bts:Heart" }, { - "@id": "bts:Mk" + "@id": "bts:HeartMuscle" }, { - "@id": "bts:Ml" + "@id": "bts:HematopoieticSystem" }, { - "@id": "bts:Mn" + "@id": "bts:Hippocampus" }, { - "@id": "bts:Mr" + "@id": "bts:Intestine" }, { - "@id": "bts:Ms" + "@id": "bts:Intra-AbdominalLymphNodes" }, { - "@id": "bts:Mt" + "@id": "bts:IntrathoracicLymphNodes" }, { - "@id": "bts:My" + "@id": "bts:Joint" }, { - "@id": "bts:Na" + "@id": "bts:Kidney" }, { - "@id": "bts:Nb" + "@id": "bts:Larynx" }, { - "@id": "bts:Nd" + "@id": "bts:Ligament" }, { - "@id": "bts:Ne" + "@id": "bts:Liver" }, { - "@id": "bts:Ng" + "@id": "bts:Lung" }, { - "@id": "bts:Nl" + "@id": "bts:Lymph" }, { - "@id": "bts:Nn" + "@id": "bts:LymphNode" }, { - "@id": "bts:No" + "@id": "bts:LymphNodesofAxillaorArm" }, { - "@id": "bts:Nr" + "@id": "bts:LymphNodesofInguinalRegionorLeg" }, { - "@id": "bts:Nv" + "@id": "bts:LymphaticSystem" }, { - "@id": "bts:Ny" + "@id": "bts:LymphoidTissue" }, { - "@id": "bts:Oc" + "@id": "bts:MainBronchus" }, { - "@id": "bts:Oj" + "@id": "bts:MammaryGland" }, { - "@id": "bts:Om" + "@id": "bts:Meninges" }, { - "@id": "bts:Or" + "@id": "bts:Mesenchyme" }, { - "@id": "bts:Os" + "@id": "bts:Mucosa" }, { - "@id": "bts:Pa" + "@id": "bts:Muscle" }, { - "@id": "bts:Pi" + "@id": "bts:NasalCavity" }, { - "@id": "bts:Pl" + "@id": "bts:NervousSystem" }, { - "@id": "bts:Ps" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Pt" + "@id": "bts:OlfactoryMucosa" }, { - "@id": "bts:Qu" + "@id": "bts:Omentum" }, { - "@id": "bts:Rm" + "@id": "bts:OralCavity" }, { - "@id": "bts:Rn" + "@id": "bts:OralMucosa" }, { - "@id": "bts:Ro" + "@id": "bts:Ovary" }, { - "@id": "bts:Ru" + "@id": "bts:Pancreas" }, { - "@id": "bts:Rw" + "@id": "bts:PelvicLymphNodes" }, { - "@id": "bts:Sa" + "@id": "bts:PendingAnnotation" }, { - "@id": "bts:Sc" + "@id": "bts:PeriodontalLigament" }, { - "@id": "bts:Sd" + "@id": "bts:PeripheralNerves" }, { - "@id": "bts:Se" + "@id": "bts:Peritoneum" }, { - "@id": "bts:Sg" + "@id": "bts:Pharynx" }, { - "@id": "bts:Si" + "@id": "bts:PituitaryGland" }, { - "@id": "bts:Sk" + "@id": "bts:Placenta" }, { - "@id": "bts:Sl" + "@id": "bts:Pleura" }, { - "@id": "bts:Sm" + "@id": "bts:ProstateGland" }, { - "@id": "bts:Sn" + "@id": "bts:Rectum" }, { - "@id": "bts:So" + "@id": "bts:ReproductiveSystem" }, { - "@id": "bts:Sq" + "@id": "bts:RespiratorySystem" }, { - "@id": "bts:Sr" + "@id": "bts:SalivaryGland" }, { - "@id": "bts:Ss" + "@id": "bts:Sclera" }, { - "@id": "bts:St" + "@id": "bts:SinonasalTract" }, { - "@id": "bts:Su" + "@id": "bts:Skin" }, { - "@id": "bts:Sv" + "@id": "bts:SmallIntestine" }, { - "@id": "bts:Sw" + "@id": "bts:SpinalCord" }, { - "@id": "bts:Ta" + "@id": "bts:Spleen" }, { - "@id": "bts:Te" + "@id": "bts:Stomach" }, { - "@id": "bts:Tg" + "@id": "bts:SynovialMembrane" }, { - "@id": "bts:Th" + "@id": "bts:Tendon" }, { - "@id": "bts:Ti" + "@id": "bts:Testis" }, { - "@id": "bts:Tk" + "@id": "bts:Thymus" }, { - "@id": "bts:Tl" + "@id": "bts:ThyroidGland" }, { - "@id": "bts:Tn" + "@id": "bts:Tongue" }, { - "@id": "bts:To" + "@id": "bts:Tonsil" }, { - "@id": "bts:Tr" + "@id": "bts:Trachea" }, { - "@id": "bts:Ts" + "@id": "bts:UmbilicalCord" }, { - "@id": "bts:Tt" + "@id": "bts:Unspecified" }, { - "@id": "bts:Tw" + "@id": "bts:Uterus" }, { - "@id": "bts:Ty" + "@id": "bts:Vagina" }, { - "@id": "bts:Ug" + "@id": "bts:VascularEndothelium" }, { - "@id": "bts:Uk" + "@id": "bts:Vein" }, { - "@id": "bts:Ur" + "@id": "bts:Vertebra" }, { - "@id": "bts:Uz" - }, + "@id": "bts:PeripheralBloodMononuclearCell" + } + ], + "sms:displayName": "Dataset Tissue", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Gonad", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Gonad", + "rdfs:subClassOf": [ { - "@id": "bts:Ve" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Vi" + "@id": "bts:FileTissue" }, { - "@id": "bts:Vo" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Wa" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Gonad", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Alveolus", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Alveolus", + "rdfs:subClassOf": [ { - "@id": "bts:Wo" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Xh" + "@id": "bts:FileTissue" }, { - "@id": "bts:Yi" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Yo" + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alveolus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Caecum", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Caecum", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Za" + "@id": "bts:FileTissue" }, { - "@id": "bts:Zh" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Zu" + "@id": "bts:DSPDatasetTissue" } ], - "sms:displayName": "Resource Language", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like", - "regex search [a-z]{2}" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Caecum", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceContributors", + "@id": "bts:Cancer-AssociatedFibroblast", "@type": "rdfs:Class", - "rdfs:comment": "The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.", - "rdfs:label": "ResourceContributors", + "rdfs:comment": "TBD", + "rdfs:label": "Cancer-AssociatedFibroblast", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Contributors", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] + "sms:displayName": "Cancer-Associated Fibroblast", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ResourceSecondaryTopic", + "@id": "bts:ConnectiveandSoftTissue", "@type": "rdfs:Class", - "rdfs:comment": "Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.", - "rdfs:label": "ResourceSecondaryTopic", + "rdfs:comment": "TBD", + "rdfs:label": "ConnectiveandSoftTissue", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Resource Secondary Topic", + "sms:displayName": "Connective and Soft Tissue", "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { - "@id": "bts:ResourceLicense", + "@id": "bts:Embryo", "@type": "rdfs:Class", - "rdfs:comment": "The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceLicense", + "rdfs:comment": "TBD", + "rdfs:label": "Embryo", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:AAL" - }, - { - "@id": "bts:ADSL" - }, + "sms:displayName": "Embryo", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:EmbryonicHeart", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "EmbryonicHeart", + "rdfs:subClassOf": [ { - "@id": "bts:AFL-1.1" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:AFL-1.2" + "@id": "bts:FileTissue" }, { - "@id": "bts:AFL-2.0" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:AFL-2.1" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Embryonic Heart", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Endothelium", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Endothelium", + "rdfs:subClassOf": [ { - "@id": "bts:AFL-3.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:AGPL-1.0" + "@id": "bts:FileTissue" }, { - "@id": "bts:AGPL-3.0" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:AMDPLPA" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Endothelium", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Epithelium", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Epithelium", + "rdfs:subClassOf": [ { - "@id": "bts:AML" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:AMPAS" + "@id": "bts:FileTissue" }, { - "@id": "bts:ANTLR-PD" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:APAFML" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Epithelium", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Genitourinary", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Genitourinary", + "rdfs:subClassOf": [ { - "@id": "bts:APL-1.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:APSL-1.0" + "@id": "bts:FileTissue" }, { - "@id": "bts:APSL-1.1" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:APSL-1.2" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genitourinary", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HairFollicle", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HairFollicle", + "rdfs:subClassOf": [ { - "@id": "bts:APSL-2.0" + "@id": "bts:DatasetTissue" }, { - "@id": "bts:Abstyles" + "@id": "bts:FileTissue" }, { - "@id": "bts:Adobe-2006" + "@id": "bts:PublicationTissue" }, { - "@id": "bts:Adobe-Glyph" - }, + "@id": "bts:DSPDatasetTissue" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Hair Follicle", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HeartMuscle", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HeartMuscle", + "rdfs:subClassOf": [ { - 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Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes", + "rdfs:label": "DataUseCodes", "rdfs:subClassOf": [ { - "@id": "bts:ResourceActivityType" + "@id": "bts:Shared" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Lecture Notes", + "schema:rangeIncludes": [ + { + "@id": "bts:IRB" + }, + { + "@id": "bts:HMB" + }, + { + "@id": "bts:PUB" + }, + { + "@id": "bts:US" + }, + { + "@id": "bts:NPOA" + }, + { + "@id": "bts:COL" + }, + { + "@id": "bts:NCU" + }, + { + "@id": "bts:NPUNCU" + }, + { + "@id": "bts:RS" + }, + { + "@id": "bts:TS" + }, + { + "@id": "bts:NRES" + }, + { + "@id": "bts:NPU" + }, + { + "@id": "bts:DUM" + }, + { + "@id": "bts:POA" + }, + { + "@id": "bts:MOR" + }, + { + "@id": "bts:GSO" + }, + { + "@id": "bts:RTN" + }, + { + "@id": "bts:CC" + }, + { + "@id": "bts:NMDS" + }, + { + "@id": "bts:IS" + }, + { + "@id": "bts:GS" + }, + { + "@id": "bts:DS" + }, + { + "@id": "bts:GRU" + }, + { + "@id": "bts:PS" + } + ], + "sms:displayName": "Data Use Codes", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Lesson", + "@id": "bts:DatasetGrantNumber", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Lesson", + "rdfs:comment": "Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.", + "rdfs:label": "DatasetGrantNumber", "rdfs:subClassOf": [ { - "@id": "bts:ResourceActivityType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Lesson", - "sms:required": "sms:false", - "sms:validationRules": [] + "schema:rangeIncludes": [ + { + "@id": "bts:Affiliated/Non-GrantAssociated" + }, + { + "@id": "bts:CA184897" + }, + { + "@id": "bts:CA184898" + }, + { + "@id": "bts:CA188388" + }, + { + "@id": "bts:CA193313" + }, + { + "@id": "bts:CA193417" + }, + { + "@id": "bts:CA193419" + }, + { + "@id": "bts:CA193461" + }, + { + "@id": "bts:CA193489" + }, + { + "@id": "bts:CA195469" + }, + { + "@id": "bts:CA199315" + }, + { + "@id": "bts:CA202123" + }, + { + "@id": "bts:CA202144" + }, + { + "@id": "bts:CA202177" + }, + { + "@id": "bts:CA202229" + }, + { + "@id": "bts:CA202241" + }, + { + "@id": "bts:CA209891" + }, + { + "@id": "bts:CA209923" + }, + { + "@id": "bts:CA209971" + }, + { 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Multiple values permitted, comma separated.", + "rdfs:label": "DatasetPubmedId", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "oj", + "sms:displayName": "Dataset Pubmed Id", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Om", + "@id": "bts:EducationalResource", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Om", + "rdfs:comment": "Manifest for describing educational resources.", + "rdfs:label": "EducationalResource", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "om", + "sms:displayName": "Educational Resource", "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Or", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Or", - "rdfs:subClassOf": [ + "sms:requiresComponent": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:GrantView" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "or", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Os", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Os", - "rdfs:subClassOf": [ + "sms:requiresDependency": [ { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Component" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Os", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Pa", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pa", - "rdfs:subClassOf": [ + "@id": "bts:EducationalResourceId" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:GrantViewKey" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - 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If 'other' is selected, please provide additional topics in the 'Resource Secondary Topic' field. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceTopic", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "rm", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Rn", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rn", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:ComputationalModelDevelopment" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Rn", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ro", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ro", - "rdfs:subClassOf": [ + "@id": "bts:ComputationalResource" + }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - 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Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceActivityType", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "tg", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Th", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Th", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:Activity/Lab" }, { - "@id": "bts:ResourceLanguage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Th", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Ti", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Ti", - "rdfs:subClassOf": [ + "@id": "bts:Assessment" + }, { - "@id": "bts:ChannelMetalSymbol" + "@id": "bts:CaseStudy" }, { - "@id": "bts:ResourceLanguage" - } - 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Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceIntendedUse", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "wa", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Wo", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Wo", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Curriculum/Instruction" + }, + { + "@id": "bts:Assessment" + }, + { + "@id": "bts:ProfessionalDevelopment" + }, + { + "@id": "bts:Other" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "wo", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Intended Use", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Xh", + "@id": "bts:ResourcePrimaryAudience", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Xh", + "rdfs:comment": "The intended end user audience for the resource. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourcePrimaryAudience", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "xh", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Yi", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Yi", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Student" + }, + { + "@id": "bts:Teacher" + }, + { + "@id": "bts:Administrator" + }, + { + "@id": "bts:Parent" + }, + { + "@id": "bts:Professor" + }, + { + "@id": "bts:GeneralAudience" + }, + { + "@id": "bts:Other" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "yi", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Primary Audience", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Yo", + "@id": "bts:ResourceEducationalLevel", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Yo", + "rdfs:comment": "Educational context (pre-school, lower-primary, upper-primary…) in which the item was intended to be used. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceEducationalLevel", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "yo", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Za", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Za", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Preschool" + }, + { + "@id": "bts:LowerPrimary" + }, + { + "@id": "bts:UpperPrimary" + }, + { + "@id": "bts:MiddleSchool" + }, + { + "@id": "bts:HighSchool" + }, + { + "@id": "bts:CommunityCollege/LowerDivision" + }, + { + "@id": "bts:College/UpperDivision" + }, + { + "@id": "bts:Graduate/Profession" + }, + { + "@id": "bts:Career/Technical" + }, + { + "@id": "bts:AdultEducation" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "za", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Educational Level", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Zh", + "@id": "bts:ResourceDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Zh", + "rdfs:comment": "Abstract or summary of the item.", + "rdfs:label": "ResourceDescription", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "zh", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Description", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:Zu", + "@id": "bts:ResourceOriginInstitution", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Zu", + "rdfs:comment": "Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceOriginInstitution", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLanguage" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "zu", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Origin Institution", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:ResourceGrantNumber", + "@id": "bts:ResourceLanguage", "@type": "rdfs:Class", - "rdfs:comment": "The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.", - "rdfs:label": "ResourceGrantNumber", + "rdfs:comment": "Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceLanguage", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -235106,7382 +237767,6663 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Affiliated/Non-GrantAssociated" + "@id": "bts:Aa" }, { - "@id": "bts:CA184897" + "@id": "bts:Ab" }, { - "@id": "bts:CA184898" + "@id": "bts:Ae" }, { - "@id": "bts:CA188388" + "@id": "bts:Af" }, { - "@id": "bts:CA193313" + "@id": "bts:Ak" }, { - "@id": "bts:CA193417" + "@id": "bts:Am" }, { - "@id": "bts:CA193419" + "@id": "bts:An" }, { - "@id": "bts:CA193461" + "@id": "bts:Ar" }, { - "@id": "bts:CA193489" + "@id": "bts:As" }, { - "@id": "bts:CA195469" + "@id": "bts:Av" }, { - "@id": "bts:CA199315" + "@id": "bts:Ay" }, { - "@id": "bts:CA202123" + "@id": "bts:Az" }, { - "@id": "bts:CA202144" + "@id": "bts:Ba" }, { - "@id": "bts:CA202177" + "@id": "bts:Be" }, { - "@id": "bts:CA202229" + "@id": "bts:Bg" }, { - "@id": "bts:CA202241" + "@id": "bts:Bh" }, { - "@id": "bts:CA209891" + "@id": "bts:Bi" }, { - "@id": "bts:CA209923" + "@id": "bts:Bm" }, { - "@id": "bts:CA209971" + "@id": "bts:Bn" }, { - "@id": "bts:CA209975" + "@id": "bts:Bo" }, { - "@id": "bts:CA209978" + "@id": "bts:Br" }, { - "@id": "bts:CA209988" + "@id": "bts:Bs" }, { - "@id": "bts:CA209992" + "@id": "bts:Ca" }, { - "@id": "bts:CA209997" + "@id": "bts:Ce" }, { - "@id": "bts:CA210152" + "@id": "bts:Ch" }, { - "@id": "bts:CA210173" + "@id": "bts:Co" }, { - "@id": "bts:CA210180" + "@id": "bts:Cr" }, { - "@id": "bts:CA210181" + "@id": "bts:Cs" }, { - "@id": "bts:CA210184" + "@id": "bts:Cu" }, { - "@id": "bts:CA210190" + "@id": "bts:Cv" }, { - "@id": "bts:CA214282" + "@id": "bts:Cy" }, { - "@id": "bts:CA214292" + "@id": "bts:Da" }, { - "@id": "bts:CA214297" + "@id": "bts:De" }, { - "@id": "bts:CA214300" + "@id": "bts:Dv" }, { - "@id": "bts:CA214354" + "@id": "bts:Dz" }, { - "@id": "bts:CA214369" + "@id": "bts:Ee" }, { - "@id": "bts:CA214381" + "@id": "bts:El" }, { - "@id": "bts:CA214411" + "@id": "bts:En" }, { - "@id": "bts:CA215709" + "@id": "bts:Eo" }, { - "@id": "bts:CA215794" + "@id": "bts:Es" }, { - "@id": "bts:CA215798" + "@id": "bts:Et" }, { - "@id": "bts:CA215845" + "@id": "bts:Eu" }, { - "@id": "bts:CA215848" + "@id": "bts:Fa" }, { - "@id": "bts:CA217297" + "@id": "bts:Ff" }, { - "@id": "bts:CA217376" + "@id": "bts:Fi" }, { - "@id": "bts:CA217377" + "@id": "bts:Fj" }, { - "@id": "bts:CA217378" + "@id": "bts:Fo" }, { - "@id": "bts:CA217450" + "@id": "bts:Fr" }, { - "@id": "bts:CA217456" + "@id": "bts:Fy" }, { - "@id": "bts:CA217514" + "@id": "bts:Ga" }, { - "@id": "bts:CA217613" + "@id": "bts:Gd" }, { - "@id": "bts:CA217617" + "@id": "bts:Gl" }, { - "@id": "bts:CA217655" + "@id": "bts:Gn" }, { - "@id": "bts:CA220378" + "@id": "bts:Gu" }, { - "@id": "bts:CA223976" + "@id": "bts:Gv" }, { - "@id": "bts:CA224012" + "@id": "bts:Ha" }, { - "@id": "bts:CA224013" + "@id": "bts:He" }, { - "@id": "bts:CA224044" + "@id": "bts:Hi" }, { - "@id": "bts:CA225088" + "@id": "bts:Ho" }, { - "@id": "bts:CA225566" + "@id": "bts:Hr" }, { - "@id": "bts:CA227136" + "@id": "bts:Ht" }, { - "@id": "bts:CA227544" + "@id": "bts:Hu" }, { - "@id": "bts:CA227550" + "@id": "bts:Hy" }, { - "@id": "bts:CA228608" + "@id": "bts:Hz" }, { - "@id": "bts:CA228963" + "@id": "bts:Ia" }, { - "@id": "bts:CA231978" + "@id": "bts:Id" }, { - "@id": "bts:CA232137" + "@id": "bts:Ie" }, { - "@id": "bts:CA232161" + "@id": "bts:Ig" }, { - "@id": "bts:CA232209" + "@id": "bts:Ii" }, { - "@id": "bts:CA232216" + "@id": "bts:Ik" }, { - "@id": "bts:CA232382" + "@id": "bts:Io" }, { - "@id": "bts:CA232517" + "@id": "bts:Is" }, { - "@id": "bts:CA234787" + "@id": "bts:It" }, { - "@id": "bts:CA235747" + "@id": "bts:Iu" }, { - "@id": "bts:CA238475" + "@id": "bts:Ja" }, { - "@id": "bts:CA238720" + "@id": "bts:Jv" }, { - "@id": "bts:CA238728" + "@id": "bts:Ka" }, { - "@id": "bts:CA240301" + "@id": "bts:Kg" }, { - "@id": "bts:CA241137" + "@id": "bts:Ki" }, { - "@id": "bts:CA241927" + "@id": "bts:Kj" }, { - "@id": "bts:CA243004" + "@id": "bts:Kk" }, { - "@id": "bts:CA243007" + "@id": "bts:Kl" }, { - "@id": "bts:CA243072" + "@id": "bts:Km" }, { - "@id": "bts:CA243073" + "@id": "bts:Kn" }, { - "@id": "bts:CA243075" + "@id": "bts:Ko" }, { - "@id": "bts:CA244100" + "@id": "bts:Kr" }, { - "@id": "bts:CA244101" + "@id": "bts:Ks" }, { - "@id": "bts:CA244107" + "@id": "bts:Ku" }, { - "@id": "bts:CA244109" + "@id": "bts:Kv" }, { - "@id": "bts:CA245313" + "@id": "bts:Kw" }, { - "@id": "bts:CA248890" + "@id": "bts:Ky" }, { - "@id": "bts:CA249799" + "@id": "bts:La" }, { - "@id": "bts:CA250040" + "@id": "bts:Lb" }, { - "@id": "bts:CA250044" + "@id": "bts:Lg" }, { - "@id": "bts:CA250046" + "@id": "bts:Li" }, { - "@id": "bts:CA250481" + "@id": "bts:Ln" }, { - "@id": "bts:CA251443" + "@id": "bts:Lo" }, { - "@id": "bts:CA253248" + "@id": "bts:Lt" }, { - "@id": "bts:CA253472" + "@id": "bts:Lu" }, { - "@id": "bts:CA253540" + "@id": "bts:Lv" }, { - "@id": "bts:CA253547" + "@id": "bts:Mg" }, { - "@id": "bts:CA253553" + "@id": "bts:Mh" }, { - "@id": "bts:CA254200" + "@id": "bts:Mi" }, { - "@id": "bts:CA254886" + "@id": "bts:Mk" }, { - "@id": "bts:CA256054" + "@id": "bts:Ml" }, { - "@id": "bts:CA256481" + "@id": "bts:Mn" }, { - "@id": "bts:CA260432" + "@id": "bts:Mr" }, { - "@id": "bts:CA261694" + "@id": "bts:Ms" }, { - "@id": "bts:CA261701" + "@id": "bts:Mt" }, { - "@id": "bts:CA261717" + "@id": "bts:My" }, { - "@id": "bts:CA261719" + "@id": "bts:Na" }, { - "@id": "bts:CA261822" + "@id": "bts:Nb" }, { - "@id": "bts:CA261841" + "@id": "bts:Nd" }, { - "@id": "bts:CA261842" + "@id": "bts:Ne" }, { - "@id": "bts:CA263001" + "@id": "bts:Ng" }, { - "@id": "bts:CA264583" + "@id": "bts:Nl" }, { - "@id": "bts:CA264610" + "@id": "bts:Nn" }, { - "@id": "bts:CA264611" + "@id": "bts:No" }, { - "@id": "bts:CA264620" + "@id": "bts:Nr" }, { - "@id": "bts:CA267170" + "@id": "bts:Nv" }, { - "@id": "bts:CA268069" + "@id": "bts:Ny" }, { - "@id": "bts:CA268072" + "@id": "bts:Oc" }, { - "@id": "bts:CA268083" + "@id": "bts:Oj" }, { - "@id": "bts:CA268084" + "@id": "bts:Om" }, { - "@id": "bts:CA271273" + "@id": "bts:Or" }, { - "@id": "bts:CA274492" + "@id": "bts:Os" }, { - "@id": "bts:CA274494" + "@id": "bts:Pa" }, { - "@id": "bts:CA274499" + "@id": "bts:Pi" }, { - "@id": "bts:CA274502" + "@id": "bts:Pl" }, { - "@id": "bts:CA274509" + "@id": "bts:Ps" }, { - "@id": "bts:CA275808" + "@id": "bts:Pt" }, { - "@id": "bts:CA279408" + "@id": "bts:Qu" }, { - "@id": "bts:CA279560" + "@id": "bts:Rm" }, { - "@id": "bts:CA280984" + "@id": "bts:Rn" }, { - "@id": "bts:CA280849" + "@id": "bts:Ro" }, { - "@id": "bts:CA280829" + "@id": "bts:Ru" }, { - "@id": "bts:CA284090" + "@id": "bts:Rw" }, { - "@id": "bts:CA284086" + "@id": "bts:Sa" }, { - "@id": "bts:CA274504" + "@id": "bts:Sc" }, { - "@id": "bts:CA283114" + "@id": "bts:Sd" }, { - "@id": "bts:CA274507" + "@id": "bts:Se" }, { - "@id": "bts:CA274506" + "@id": "bts:Sg" }, { - "@id": "bts:CA274511" + "@id": "bts:Si" }, { - "@id": "bts:CA282451" + "@id": "bts:Sk" }, { - "@id": "bts:CA284085" + "@id": "bts:Sl" }, { - "@id": "bts:CA283749" + "@id": "bts:Sm" }, { - "@id": "bts:CA289564" + "@id": "bts:Sn" }, { - "@id": "bts:CA293470" + "@id": "bts:So" }, { - "@id": "bts:CA279722" + "@id": "bts:Sq" }, { - "@id": "bts:CA290115" + "@id": "bts:Sr" }, { - "@id": "bts:CA279948" + "@id": "bts:Ss" }, { - "@id": "bts:CA281216" + "@id": "bts:St" }, { - "@id": "bts:CA292382" + "@id": "bts:Su" }, { - "@id": "bts:CA290442" + "@id": "bts:Sv" }, { - "@id": "bts:CA293853" - } - ], - "sms:displayName": "Resource Grant Number", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:AAL", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AAL", - "rdfs:subClassOf": [ + "@id": "bts:Sw" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Ta" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AAL", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ADSL", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ADSL", - "rdfs:subClassOf": [ + "@id": "bts:Te" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Tg" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ADSL", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AFL-1.1", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AFL-1.1", - "rdfs:subClassOf": [ + "@id": "bts:Th" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Ti" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AFL-1.1", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AFL-1.2", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AFL-1.2", - "rdfs:subClassOf": [ + "@id": "bts:Tk" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Tl" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AFL-1.2", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AFL-2.0", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AFL-2.0", - "rdfs:subClassOf": [ + "@id": "bts:Tn" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:To" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AFL-2.0", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AFL-2.1", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AFL-2.1", - "rdfs:subClassOf": [ + "@id": "bts:Tr" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Ts" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AFL-2.1", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AFL-3.0", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AFL-3.0", - "rdfs:subClassOf": [ + "@id": "bts:Tt" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Tw" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AFL-3.0", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AGPL-1.0", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AGPL-1.0", - "rdfs:subClassOf": [ + "@id": "bts:Ty" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Ug" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AGPL-1.0", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AGPL-3.0", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AGPL-3.0", - "rdfs:subClassOf": [ + "@id": "bts:Uk" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Ur" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AGPL-3.0", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AMDPLPA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AMDPLPA", - "rdfs:subClassOf": [ + "@id": "bts:Uz" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Ve" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AMDPLPA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AML", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AML", - "rdfs:subClassOf": [ + "@id": "bts:Vi" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Vo" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AML", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AMPAS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AMPAS", - "rdfs:subClassOf": [ + "@id": "bts:Wa" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Wo" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "AMPAS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ANTLR-PD", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ANTLR-PD", - "rdfs:subClassOf": [ + "@id": "bts:Xh" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Yi" }, { - "@id": "bts:ToolLicense" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ANTLR-PD", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:APAFML", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "APAFML", - "rdfs:subClassOf": [ + "@id": "bts:Yo" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:Za" }, { - "@id": "bts:ToolLicense" + "@id": "bts:Zh" + }, + { + "@id": "bts:Zu" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "APAFML", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Resource Language", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like", + "regex search [a-z]{2}" + ] }, { - "@id": "bts:APL-1.0", + "@id": "bts:ResourceContributors", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "APL-1.0", + "rdfs:comment": "The name(s) of the contributor(s) to the item. 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"schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "CECILL-1.1", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CECILL-2.0", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CECILL-2.0", - "rdfs:subClassOf": [ + "@id": "bts:IJG" + }, { - "@id": "bts:ResourceLicense" + "@id": "bts:IPA" }, { - "@id": "bts:ToolLicense" + "@id": "bts:IPL-1.0" + }, + { + "@id": "bts:ISC" + }, + { + "@id": "bts:ImageMagick" + }, + { + "@id": "bts:Imlib2" + }, + { + "@id": "bts:Info-ZIP" + }, + { + "@id": "bts:Intel" + }, + { + "@id": "bts:Intel-ACPI" + }, + { + "@id": "bts:Interbase-1.0" + }, + { + "@id": "bts:JSON" + }, + { + "@id": "bts:JasPer-2.0" + }, + { + "@id": "bts:LAL-1.2" + }, + { + "@id": "bts:LAL-1.3" + }, + { + "@id": "bts:LGPL-2.0" + }, + { + "@id": "bts:LGPL-2.1" + }, + { + "@id": "bts:LGPL-3.0" + }, + { + "@id": "bts:LGPLLR" + }, + { + "@id": "bts:LPL-1.0" + }, + { + "@id": "bts:LPL-1.02" + }, + { + "@id": 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Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceUseRequirements", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-2.0", + "sms:displayName": "Resource Use Requirements", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:CECILL-2.1", + "@id": "bts:ResourceAlias", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CECILL-2.1", + "rdfs:comment": "A unique identifier (DOI, Synapse ID) for the item, if it exists.", + "rdfs:label": "ResourceAlias", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-2.1", + "sms:displayName": "Resource Alias", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:CECILL-B", + "@id": "bts:ResourceInternalIdentifier", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CECILL-B", + "rdfs:comment": "The institution-specific ID for the item, if applicable. May be non-unique. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceInternalIdentifier", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-B", + "sms:displayName": "Resource Internal Identifier", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CECILL-C", + "@id": "bts:ResourceMediaAccessibility", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CECILL-C", + "rdfs:comment": "Accessibility features (Alternative Text, Audio Description, etc.) incorporated into the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceMediaAccessibility", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CECILL-C", + "schema:rangeIncludes": [ + { + "@id": "bts:AlternativeText" + }, + { + "@id": "bts:AudioDescription" + }, + { + "@id": "bts:Braille" + }, + { + "@id": "bts:Captions" + }, + { + "@id": "bts:ChemML" + }, + { + "@id": "bts:DescribedMath" + }, + { + "@id": "bts:DisplayTransformability" + }, + { + "@id": "bts:Haptic" + }, + { + "@id": "bts:HighContrast" + }, + { + "@id": "bts:LargePrint" + }, + { + "@id": "bts:Latex" + }, + { + "@id": "bts:LongDescription" + }, + { + "@id": "bts:MathML" + }, + { + "@id": "bts:NemethBraille" + }, + { + "@id": "bts:SignLanguage" + }, + { + "@id": "bts:StructuralNavigation" + }, + { + "@id": "bts:TactileGraphics" + }, + { + "@id": "bts:TextTranscript" + } + ], + "sms:displayName": "Resource Media Accessibility", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CNRI-Jython", + "@id": "bts:ResourceAccessHazard", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CNRI-Jython", + "rdfs:comment": "Sensory hazards (Flashing, Motion, etc.) applicable to the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceAccessHazard", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CNRI-Jython", + "schema:rangeIncludes": [ + { + "@id": "bts:Flashing" + }, + { + "@id": "bts:Motion" + }, + { + "@id": "bts:Simulation" + }, + { + "@id": "bts:Sound" + } + ], + "sms:displayName": "Resource Access Hazard", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CNRI-Python", + "@id": "bts:ResourceDatasetAlias", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CNRI-Python", + "rdfs:comment": "URL or persistent identifier (DOI, Synapse ID) for any dataset(s) that is intended to be used with the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceDatasetAlias", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CNRI-Python", + "sms:displayName": "Resource Dataset Alias", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CNRI-Python-GPL-Compatible", + "@id": "bts:ResourceToolLink", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CNRI-Python-GPL-Compatible", + "rdfs:comment": "URL or persistent identifier (DOI, Synapse ID) for any software or tool that is intended to be used with the item. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceToolLink", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CNRI-Python-GPL-Compatible", + "sms:displayName": "Resource Tool Link", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:CPAL-1.0", + "@id": "bts:GrantView", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CPAL-1.0", + "rdfs:comment": "The denormalized manifest for grant submission.", + "rdfs:label": "GrantView", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" - }, - { - "@id": "bts:ToolLicense" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CPAL-1.0", + "sms:displayName": "Grant View", "sms:required": "sms:false", + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:GrantViewId" + }, + { + "@id": "bts:GrantName" + }, + { + "@id": "bts:GrantNumber" + }, + { + "@id": "bts:GrantAbstract" + }, + { + "@id": "bts:GrantType" + }, + { + "@id": "bts:GrantThemeName" + }, + { + "@id": "bts:GrantInstitutionName" + }, + { + "@id": "bts:GrantInstitutionAlias" + }, + { + "@id": "bts:GrantInvestigator" + }, + { + "@id": "bts:GrantConsortiumName" + }, + { + "@id": "bts:GrantStartDate" + }, + { + "@id": "bts:GrantEndDate" + }, + { + "@id": "bts:NIHRePORTERLink" + }, + { + "@id": "bts:DurationofFunding" + }, + { + "@id": "bts:EmbargoEndDate" + }, + { + "@id": "bts:GrantSynapseTeam" + }, + { + "@id": "bts:GrantSynapseProject" + } + ], "sms:validationRules": [] }, { - "@id": "bts:CPL-1.0", + "@id": "bts:ComputationalModelDevelopment", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CPL-1.0", + "rdfs:label": "ComputationalModelDevelopment", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:ResourceTopic" }, { - "@id": "bts:ToolLicense" + "@id": "bts:GrantThemeName" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CPL-1.0", + "sms:displayName": "Computational Model Development", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CPOL-1.02", + "@id": "bts:ComputationalResource", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CPOL-1.02", + "rdfs:label": "ComputationalResource", "rdfs:subClassOf": [ { - "@id": "bts:ResourceLicense" + "@id": "bts:ResourceTopic" }, { - "@id": "bts:ToolLicense" + "@id": "bts:GrantThemeName" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CPOL-1.02", + "sms:displayName": "Computational Resource", "sms:required": "sms:false", "sms:validationRules": [] }, { - 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Multiple values permitted, comma separated.", - "rdfs:label": "FileAssay", + "rdfs:comment": "The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.", + "rdfs:label": "ResourceGrantNumber", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -242492,9057 +244434,8543 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:10-cellRNASequencing" - }, - { - "@id": "bts:16SRibosomalGeneSequencingAssay" - }, - { - "@id": "bts:3'RNA-seq" - }, - { - "@id": "bts:3C" - }, - { - "@id": "bts:3C-qPCR" - }, - { - "@id": "bts:3DATAC-PALM" + "@id": "bts:Affiliated/Non-GrantAssociated" }, { - "@id": "bts:3DBioprinting" + "@id": "bts:CA184897" }, { - "@id": "bts:3DCellCulture" + "@id": "bts:CA184898" }, { - "@id": "bts:4C" + "@id": "bts:CA188388" }, { - "@id": "bts:5C" + "@id": "bts:CA193313" }, { - "@id": "bts:ATAC-Seq" + "@id": "bts:CA193417" }, { - "@id": "bts:ATPBioluminescenceAssay" + "@id": "bts:CA193419" }, { - "@id": "bts:AffinityPurificationMassSpectrometry" + "@id": "bts:CA193461" }, { - "@id": "bts:Allograft" + "@id": "bts:CA193489" }, { - "@id": "bts:AmpliconSequencing" + "@id": "bts:CA195469" }, { - "@id": "bts:AngiogenesisAssay" + "@id": "bts:CA199315" }, { - "@id": "bts:ApoptosisAssay" + "@id": "bts:CA202123" }, { - "@id": "bts:AtomicAbsorptionSpectrophotometry" + "@id": "bts:CA202144" }, { - "@id": "bts:AtomicAbsorptionSpectroscopy" + "@id": "bts:CA202177" }, { - "@id": "bts:AtomicForceMicroscopy" + "@id": "bts:CA202229" }, { - "@id": "bts:Autoradiography" + "@id": "bts:CA202241" }, { - "@id": "bts:Barcode-Seq" + "@id": "bts:CA209891" }, { - "@id": "bts:BicinchoninicAcidAssay" + "@id": "bts:CA209923" }, { - "@id": "bts:BindingAssay" + "@id": "bts:CA209971" }, { - "@id": "bts:Bio-LayerInterferometry" + "@id": "bts:CA209975" }, { - "@id": "bts:BioluminescenceImaging" + "@id": "bts:CA209978" }, { - "@id": "bts:BisulfiteSequencing" + "@id": "bts:CA209988" }, { - "@id": "bts:BrightfieldMicroscopy" + "@id": "bts:CA209992" }, { - "@id": "bts:BrillouinMicroscopy" + "@id": "bts:CA209997" }, { - "@id": "bts:CASFISH" + "@id": "bts:CA210152" }, { - "@id": "bts:CITE-seq" + "@id": "bts:CA210173" }, { - "@id": "bts:CLIP-qPCR" + "@id": "bts:CA210180" }, { - "@id": "bts:CRISPR" + "@id": "bts:CA210181" }, { - "@id": "bts:CUT&RUN" + "@id": "bts:CA210184" }, { - "@id": "bts:CUT&Tag-Sequencing" + "@id": "bts:CA210190" }, { - "@id": "bts:CellAdhesionAssay" + "@id": "bts:CA214282" }, { - "@id": "bts:CellProliferationAssay" + "@id": "bts:CA214292" }, { - "@id": "bts:CellViabilityAssay" + "@id": "bts:CA214297" }, { - "@id": "bts:Cell-spreadingAssay" + "@id": "bts:CA214300" }, { - "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay" + "@id": "bts:CA214354" }, { - "@id": "bts:CerenkovLuminescenceImaging" + "@id": "bts:CA214369" }, { - "@id": "bts:ChIA-PET" + "@id": "bts:CA214381" }, { - "@id": "bts:ChIP-PCR" + "@id": "bts:CA214411" }, { - "@id": "bts:ChIP-Seq" + "@id": "bts:CA215709" }, { - "@id": "bts:ChIP-qPCRassay" + "@id": "bts:CA215794" }, { - "@id": "bts:ChemiluminescentAssay" + "@id": "bts:CA215798" }, { - "@id": "bts:ChemotaxisAssay" + "@id": "bts:CA215845" }, { - "@id": "bts:CircularDichroismSpectroscopy" + "@id": "bts:CA215848" }, { - "@id": "bts:Co-Immunoprecipitation" + "@id": "bts:CA217297" }, { - "@id": "bts:Co-cultureAssay" + "@id": "bts:CA217376" }, { - "@id": "bts:Collision-InducedDissociation" + "@id": "bts:CA217377" }, { - "@id": "bts:ColorimetricCellViabilityAssay" + "@id": "bts:CA217378" }, { - "@id": "bts:ComputationalModeling" + "@id": "bts:CA217450" }, { - "@id": "bts:ComputationalTool" + "@id": "bts:CA217456" }, { - "@id": "bts:ComputedTomography" + "@id": "bts:CA217514" }, { - "@id": "bts:ConfocalMicroscopy" + "@id": "bts:CA217613" }, { - "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy" + "@id": "bts:CA217617" }, { - "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing" + "@id": "bts:CA217655" }, { - "@id": "bts:Cross-LinkingMassSpectrometry" + "@id": "bts:CA220378" }, { - "@id": "bts:CyclicImmunofluorescence" + "@id": "bts:CA223976" }, { - "@id": "bts:CytochemicalStain" + "@id": "bts:CA224012" }, { - "@id": "bts:CytokineExpressionProfile" + "@id": "bts:CA224013" }, { - "@id": "bts:CytometricBeadArrayAssay" + "@id": "bts:CA224044" }, { - "@id": "bts:CytotoxicityAssay" + "@id": "bts:CA225088" }, { - "@id": "bts:DBiT-Seq" + "@id": "bts:CA225566" }, { - "@id": "bts:DNAGene-ExpressionMicroarray" + "@id": "bts:CA227136" }, { - "@id": "bts:DNAMethylationArray" + "@id": "bts:CA227544" }, { - "@id": "bts:DNASequencing" + "@id": "bts:CA227550" }, { - "@id": "bts:DNase-Seq" + "@id": "bts:CA228608" }, { - "@id": "bts:DRIP-seq" + "@id": "bts:CA228963" }, { - "@id": "bts:DarkFieldMicroscopy" + "@id": "bts:CA231978" }, { - "@id": "bts:DeepMutationalScanning" + "@id": "bts:CA232137" }, { - "@id": "bts:DesorptionElectrosprayIonization" + "@id": "bts:CA232161" }, { - "@id": "bts:DideoxyChainTerminationDNASequencing" + "@id": "bts:CA232209" }, { - "@id": "bts:DifferentialInterferenceContrastMicroscopy" + "@id": "bts:CA232216" }, { - "@id": "bts:DifferentialScanningFluorimetry" + "@id": "bts:CA232382" }, { - "@id": "bts:DiffusionWeightedImaging" + "@id": "bts:CA232517" }, { - "@id": "bts:DirectLong-ReadRNASequencing" + "@id": "bts:CA234787" }, { - "@id": "bts:Drop-Seq" + "@id": "bts:CA235747" }, { - "@id": "bts:DropletDigitalPCR" + "@id": "bts:CA238475" }, { - "@id": "bts:Dual-LuciferaseReporterAssay" + "@id": "bts:CA238720" }, { - "@id": "bts:DyeEndocytosisAssay" + "@id": "bts:CA238728" }, { - "@id": "bts:DynamicContrast-EnhancedMagneticResonanceImaging" + "@id": "bts:CA240301" }, { - "@id": "bts:DynamicForceSpectroscopy" + "@id": "bts:CA241137" }, { - "@id": "bts:DynamicLightScattering" + "@id": "bts:CA241927" }, { - "@id": "bts:DynamicSusceptibilityContrast-EnhancedMagneticResonanceImaging" + "@id": "bts:CA243004" }, { - "@id": "bts:ELISA" + "@id": "bts:CA243007" }, { - "@id": "bts:EfferocytosisAssay" + "@id": "bts:CA243072" }, { - "@id": "bts:ElectronDiffraction" + "@id": "bts:CA243073" }, { - "@id": "bts:ElectronMicroscopy" + "@id": "bts:CA243075" }, { - "@id": "bts:ElectronParamagneticResonanceSpectroscopy" + "@id": "bts:CA244100" }, { - "@id": "bts:ElectrophoreticMobilityShiftAssay" + "@id": "bts:CA244101" }, { - "@id": "bts:ElectrosprayIonizationTime-of-FlightMassSpectrometry" + "@id": "bts:CA244107" }, { - "@id": "bts:EndotoxinAssay" + "@id": "bts:CA244109" }, { - "@id": "bts:Energy-DispersiveX-RaySpectroscopy" + "@id": "bts:CA245313" }, { - "@id": "bts:EnzymeActivityAssay" + "@id": "bts:CA248890" }, { - "@id": "bts:Enzyme-LinkedImmunospotAssay" + "@id": "bts:CA249799" }, { - "@id": "bts:EpidemiologicalMethod" + "@id": "bts:CA250040" }, { - "@id": "bts:FAIRE-Seq" + "@id": "bts:CA250044" }, { - "@id": "bts:FISH" + "@id": "bts:CA250046" }, { - "@id": "bts:FlowCytometry" + "@id": "bts:CA250481" }, { - "@id": "bts:FluorescenceActivatedCellSorting" + "@id": "bts:CA251443" }, { - "@id": "bts:FluorescenceCorrelationSpectroscopy" + "@id": "bts:CA253248" }, { - "@id": "bts:FluorescenceImaging" + "@id": "bts:CA253472" }, { - "@id": "bts:FluorescenceLifetimeImagingMicroscopy" + "@id": "bts:CA253540" }, { - "@id": "bts:FluorescenceMicroscopy" + "@id": "bts:CA253547" }, { - "@id": "bts:FluorescenceRecoveryAfterPhoto-Bleaching" + "@id": "bts:CA253553" }, { - "@id": "bts:FluorescentAntibodyProcedure" + "@id": "bts:CA254200" }, { - "@id": "bts:FluorescentCellBarcoding" + "@id": "bts:CA254886" }, { - "@id": "bts:FluorescentInSituSequencing" + "@id": "bts:CA256054" }, { - "@id": "bts:FocusedIonBeamScanningElectronMicroscopy" + "@id": "bts:CA256481" }, { - "@id": "bts:ForsterResonanceEnergyTransfer" + "@id": "bts:CA260432" }, { - "@id": "bts:FourierTransformIonCyclotronResonanceMassSpectrometry" + "@id": "bts:CA261694" }, { - "@id": "bts:Fourier-TransformInfraredSpectroscopy" + "@id": "bts:CA261701" }, { - "@id": "bts:GasChromatographyMassSpectrometry" + "@id": "bts:CA261717" }, { - "@id": "bts:GelatinZymography" + "@id": "bts:CA261719" }, { - "@id": "bts:Genotyping" + "@id": "bts:CA261822" }, { - "@id": "bts:GlobalChromatinProfiling" + "@id": "bts:CA261841" }, { - "@id": "bts:GlobalRun-OnSequencing" + "@id": "bts:CA261842" }, { - "@id": "bts:GraphiteFurnaceAtomicAbsorptionSpectrometry" + "@id": "bts:CA263001" }, { - "@id": "bts:HL-Chip" + "@id": "bts:CA264583" }, { - "@id": "bts:HPLC-MSMS" + "@id": "bts:CA264610" }, { - "@id": "bts:HematoxylinandEosinStainingMethod" + "@id": "bts:CA264611" }, { - "@id": "bts:Hi-C" + "@id": "bts:CA264620" }, { - "@id": "bts:HiChIP" + "@id": "bts:CA267170" }, { - "@id": "bts:HighThroughputScreening" + "@id": "bts:CA268069" }, { - "@id": "bts:High-ContentScreen" + "@id": "bts:CA268072" }, { - "@id": "bts:Hydrogels" + "@id": "bts:CA268083" }, { - "@id": "bts:HydrophilicInteractionChromatography" + "@id": "bts:CA268084" }, { - "@id": "bts:ImageCytometry" + "@id": "bts:CA271273" }, { - "@id": "bts:Imaging" + "@id": "bts:CA274492" }, { - "@id": "bts:ImmobilizedMetalAffinityChromatography" + "@id": "bts:CA274494" }, { - "@id": "bts:ImmunoFISH" + "@id": "bts:CA274499" }, { - "@id": "bts:Immunoassay" + "@id": "bts:CA274502" }, { - "@id": "bts:Immunocytochemistry" + "@id": "bts:CA274509" }, { - "@id": "bts:ImmunohistochemistryStainingMethod" + "@id": "bts:CA275808" }, { - "@id": "bts:Immunoprecipitation" + "@id": "bts:CA279408" }, { - "@id": "bts:InSituHybridization" + "@id": "bts:CA279560" }, { - "@id": "bts:InVitroCellKillingAssay" + "@id": "bts:CA280984" }, { - "@id": "bts:InVitroModel" + "@id": "bts:CA280849" }, { - "@id": "bts:InVitroSelection" + "@id": "bts:CA280829" }, { - "@id": "bts:InVitroTranslation" + "@id": "bts:CA284090" }, { - "@id": "bts:InVivoBioluminescence" + "@id": "bts:CA284086" }, { - "@id": "bts:In-CellWesternAssay" + "@id": "bts:CA274504" }, { - "@id": "bts:Inductively-CoupledPlasmaMassSpectrometry" + "@id": "bts:CA283114" }, { - "@id": "bts:InterferenceReflectionMicroscopy" + "@id": "bts:CA274507" }, { - "@id": "bts:IntravitalMicroscopy" + "@id": "bts:CA274506" }, { - "@id": "bts:InvasionAssay" + "@id": "bts:CA274511" }, { - "@id": "bts:Karyotyping" + "@id": "bts:CA282451" }, { - "@id": "bts:Knife-EdgeScanningMicroscopy" + "@id": "bts:CA284085" }, { - "@id": "bts:L1000mRNAProfilingAssay" + "@id": "bts:CA283749" }, { - "@id": "bts:LatticeLightSheetMicroscopy" + "@id": "bts:CA289564" }, { - "@id": "bts:LiquidChromatographyMassSpectrometry" + "@id": "bts:CA293470" }, { - "@id": "bts:LiquidChromatography/TandemMassSpectrometry" + "@id": "bts:CA279722" }, { - "@id": "bts:Low-VacuumScanningElectronMicroscopy" + "@id": "bts:CA290115" }, { - "@id": "bts:LuciferaseReporterAssay" + "@id": "bts:CA279948" }, { - "@id": "bts:LuminescentCellViabilityAssay" + "@id": "bts:CA281216" }, { - "@id": "bts:MALDI-TOFMassSpectrometry" + "@id": "bts:CA292382" }, { - "@id": "bts:MEMACellGrowthAssay" + "@id": "bts:CA290442" }, { - "@id": "bts:MNase-Seq" - }, + "@id": "bts:CA293853" + } + ], + "sms:displayName": "Resource Grant Number", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:AAL", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AAL", + "rdfs:subClassOf": [ { - "@id": "bts:MULTI-Seq" + "@id": "bts:ResourceLicense" }, { - "@id": "bts:MacrophagePolarizationAssay" - }, + "@id": "bts:ToolLicense" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "AAL", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ADSL", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ADSL", + "rdfs:subClassOf": [ { - "@id": "bts:MagneticResonanceImaging" + "@id": "bts:ResourceLicense" }, { - "@id": "bts:MagneticTweezers" - }, - { - "@id": "bts:MagneticTwistingCytometry" - }, - { - "@id": "bts:MagneticallyActivatedCellSorting" - }, - { - "@id": "bts:MammosphereFormationAssay" - }, - { - "@id": "bts:MassCytometry" - }, - { - "@id": "bts:MassSpectrometry" - }, - { - "@id": "bts:MathematicalModeling" - }, - { - "@id": "bts:MeDIP" - }, - { - "@id": "bts:MeRIP-Seq" - }, - { - "@id": "bts:MethylBindingDomainSequencing" - }, - { - "@id": "bts:Methylation-SpecificPCR" - }, - { - "@id": "bts:Micro-computedTomography" - }, - { - "@id": "bts:MicroRNAExpressionArray" - }, - { - "@id": "bts:MicroRNASequencing" - }, - { - "@id": "bts:MicrocontactPrinting" - }, - { - "@id": "bts:Microfluidics" - }, - { - "@id": "bts:MicropipetteAdhesionAssay" - }, - { - "@id": "bts:MicropipetteAspiration" - }, - { - "@id": "bts:Microscopy" - }, - { - "@id": "bts:MigrationAssay" - }, - { - "@id": "bts:Mint-ChIP" - }, - { - "@id": "bts:Modeling" - }, - { - "@id": "bts:MolecularSimulations" - }, - { - "@id": "bts:MonolayerStressMicroscopy" - }, - { - "@id": "bts:Multi-AngleLightScattering" - }, - { - "@id": "bts:Multi-IsotopeMassSpectrometry" - }, - { - "@id": "bts:MultiparametricMagneticResonanceImaging" - }, - { - "@id": "bts:MultiphotonMicroscopy" - }, - { - "@id": "bts:MultiplexedError-RobustFluorescenceInSituHybridization" - }, - { - "@id": "bts:MultiplexedImmunofluorescence" - }, - { - "@id": "bts:MultiplexedImmunohistochemistry" - }, - { - "@id": "bts:MultiplexedIonBeamImaging" - }, - { - "@id": "bts:MurineModel" - }, - { - "@id": "bts:Nano-hmC-Seal" - }, - { - "@id": "bts:NanoStringDigitalSpatialProfiling" - }, - { - "@id": "bts:Nanopatterning" - }, - { - "@id": "bts:NanoporeSequencing" - }, - { - "@id": "bts:Nanowire" - }, - { - "@id": "bts:NestedPCR" - }, - { - "@id": "bts:NextGenerationSequencing" - }, - { - "@id": "bts:Nm-seq" - }, - { - "@id": "bts:NotApplicable" - }, - { - "@id": "bts:NuclearMagneticResonance" - }, - { - "@id": "bts:OpticalCoherenceTomography" - }, - { - "@id": "bts:OpticalEmissionSpectroscopy" - }, - { - "@id": "bts:OpticalMapping" - }, - { - "@id": "bts:OpticalStretcher" - }, - { - "@id": "bts:OpticalTweezers" - }, - { - "@id": "bts:OptogeneticAssay" - }, - { - "@id": "bts:Organoid" - }, - { - "@id": "bts:PCR" - }, - { - "@id": "bts:PET-CT" - }, - { - "@id": "bts:ParaquatSurvivalAssay" - }, - { - "@id": "bts:PartialWaveSpectroscopy" - }, - { - "@id": "bts:PatientDerivedXenograft" - }, - { - "@id": "bts:PendingAnnotation" - }, - { - "@id": "bts:PermeabilityAssay" - }, - { - "@id": "bts:PhagocytosisAssay" - }, - { - "@id": "bts:PhotoacousticImaging" - }, - { - "@id": "bts:Photolithography" - }, - { - "@id": "bts:PlasmidConstruction" - }, - { - "@id": "bts:PlateSeq" - }, - { - "@id": "bts:PointAccumulationforImaginginNanoscaleTopography" - }, - { - "@id": "bts:PositronEmissionTomography" - }, - { - "@id": "bts:PrecisionRun-OnSequencing" - }, - { - "@id": "bts:ProteomicsAssay" - }, - { - "@id": "bts:ProximityLigationAssay" - }, - { - "@id": "bts:Pull-DownAssay" - }, - { - "@id": "bts:QFISH" - }, - { - "@id": "bts:QuantitativeMultiplexImmunofluorescence" - }, - { - "@id": "bts:QuantitativePointAccumulationforImaginginNanoscaleTopography" - }, - { - "@id": "bts:Questionnaire" - }, - { - "@id": "bts:RASProteinFamilyActivationAssay" - }, - { - "@id": "bts:RIP" - }, - { - "@id": "bts:RIP-Seq" - }, - { - "@id": "bts:RNASequencing" - }, - { - "@id": "bts:RNAiScreen" - }, - { - "@id": "bts:RT-PCR" - }, - { - "@id": "bts:RT-qPCR" - }, - { - "@id": "bts:RamanSpectroscopy" - }, - { - "@id": "bts:ReducedRepresentationBisulfiteSequencing" - }, - { - "@id": "bts:ReversePhaseProteinArray" - }, - { - "@id": "bts:Reverse-PhaseHigh-PerformanceliquidChromatography" - }, - { - "@id": "bts:Rheometry" - }, - { - "@id": "bts:Ribo-Seq" - }, - { - "@id": "bts:RibosomalPProteinAntibodyMeasurement" - }, - { - "@id": "bts:ScanningAngleInterferenceMicroscopy" - }, - { - "@id": "bts:ScanningElectronMicroscopy" - }, - { - "@id": "bts:Second-HarmonicImagingMicroscopy" - }, - { - "@id": "bts:ShotgunMassSpectrometry" - }, - { - "@id": "bts:SingleCellATAC-Seq" - }, - { - "@id": "bts:SingleCellCytokineDetectionChipAssay" - }, - { - "@id": "bts:SingleCellDNASequencing" - }, - { - "@id": "bts:SingleCellGelElectrophoresis" - }, - { - "@id": "bts:SingleCellRNA-Sequencing" - }, - { - "@id": "bts:SingleMoleculeForsterResonanceEnergyTransfer" - }, - { - "@id": "bts:SingleNucleotidePolymorphismArray" - }, - { - "@id": "bts:SingleNucleusRNA-Sequencing" - }, - { - "@id": "bts:Single-CellBCRSequencing" - }, - { - "@id": "bts:Single-CellBarcodeChip" - }, - { - "@id": "bts:Single-CellTCRSequencing" - }, - { - "@id": "bts:Single-MoleculeTracking" - }, - { - "@id": "bts:SiriusRedStaining" - }, - { - "@id": "bts:SizeExclusionChromatography" - }, - { - "@id": "bts:Small-AngleX-rayScattering" - }, - { - "@id": "bts:SoftAgarAssay" - }, - { - "@id": "bts:SouthernBlotting" - }, - { - "@id": "bts:Spectroscopy" - }, - { - 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"@id": "bts:Overlappinglesionofbrain", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbrain", - "rdfs:subClassOf": [ + "@id": "bts:UltrasoundImaging" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of brain", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofbladder", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbladder", - "rdfs:subClassOf": [ + "@id": "bts:TranscriptionprofilingbyNanoString" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of bladder", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofbiliarytract", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbiliarytract", - "rdfs:subClassOf": [ + "@id": "bts:AlcianBlueStainingMethod" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of biliary tract", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofaccessorysinuses", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofaccessorysinuses", - "rdfs:subClassOf": [ + "@id": "bts:ArtificialIntelligence" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of accessory sinuses", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofrectum;anusandanalcanal", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofrectum;anusandanalcanal", - "rdfs:subClassOf": [ + "@id": "bts:CellCulture" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of rectum; anus and anal canal", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofperipheralnervesandautonomicnervoussystem", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofperipheralnervesandautonomicnervoussystem", - "rdfs:subClassOf": [ + "@id": "bts:ClinicalStudy" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of peripheral nerves and autonomic nervous system", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofheart;mediastinumandpleura", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofheart;mediastinumandpleura", - "rdfs:subClassOf": [ + "@id": "bts:Cell-freeCirculatingTumorDNAAssay" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of heart; mediastinum and pleura", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofeyeandadnexa", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofeyeandadnexa", - "rdfs:subClassOf": [ + "@id": "bts:Co-ImmunoprecipitationMassSpectrometry" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of eye and adnexa", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofbrainandcentralnervoussystem", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbrainandcentralnervoussystem", - "rdfs:subClassOf": [ + "@id": "bts:DeepLearning" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of brain and central nervous system", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilageoflimbs", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbones;jointsandarticularcartilageoflimbs", - "rdfs:subClassOf": [ + "@id": "bts:GeneOntologyEnrichmentAnalysis" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of bones; joints and articular cartilage of limbs", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilage", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbones;jointsandarticularcartilage", - "rdfs:subClassOf": [ + "@id": "bts:GeneSetEnrichmentAnalysis" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of bones; joints and articular cartilage", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Posteriorwallofhypopharynx", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriorwallofhypopharynx", - "rdfs:subClassOf": [ + "@id": "bts:GeneSilencing" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Posterior wall of hypopharynx", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Posteriorwallofbladder", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriorwallofbladder", - "rdfs:subClassOf": [ + "@id": "bts:HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Posterior wall of bladder", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Posteriormediastinum", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriormediastinum", - "rdfs:subClassOf": [ + "@id": "bts:ImagingMassCytometry" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Posterior mediastinum", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Postcricoidregion", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Postcricoidregion", - "rdfs:subClassOf": [ + "@id": "bts:ImmunofluorescentStainingMethod" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Postcricoid region", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Pleura;NOS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pleura;NOS", - "rdfs:subClassOf": [ + "@id": "bts:Immunotherapy" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Pleura; NOS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles", - "@type": "rdfs:Class", - "rdfs:comment": "Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.", - "rdfs:label": "NanoStringGeoMxAuxiliaryFiles", - "rdfs:subClassOf": [ + "@id": "bts:ViralTransduction" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMx Auxiliary Files", - "sms:required": "sms:false", - "sms:requiresDependency": [ + "@id": "bts:MetastaticColonizationAssay" + }, { - "@id": "bts:Component" + "@id": "bts:PhylogeneticAnalysis" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesId" + "@id": "bts:PicrosiriusStaining" }, { - "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile" + "@id": "bts:ScratchAssay" }, { - "@id": "bts:SynapseIDofGeoMxDSPPKCFile" + "@id": "bts:StructuralVariantAnalysis" }, { - "@id": "bts:SynapseIDofGeoMxLabWorksheetFile" + "@id": "bts:SurvivalAnalysis" }, { - "@id": "bts:SynapseIDofGeoMxDSPConfigFile" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxAuxiliaryFilesId", - "rdfs:subClassOf": [ + "@id": "bts:TargetedErrorCorrectionSequencing" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxAuxiliaryFiles_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile", - "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.", - "rdfs:label": "SynapseIDofGeoMxDSPROISegmentAnnotationFile", - "rdfs:subClassOf": [ + "@id": "bts:Tuba-Seq" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx DSP ROI Segment Annotation File", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like", - "regex match syn\\d+" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxDSPPKCFile", - "@type": "rdfs:Class", - "rdfs:comment": "The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.", - "rdfs:label": "SynapseIDofGeoMxDSPPKCFile", - "rdfs:subClassOf": [ + "@id": "bts:SDS-PAGE" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx DSP PKC File", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like", - "regex match syn\\d+" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxLabWorksheetFile", - "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.", - "rdfs:label": "SynapseIDofGeoMxLabWorksheetFile", - "rdfs:subClassOf": [ + "@id": "bts:CellFractionation" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx Lab Worksheet File", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like", - "regex match syn\\d+" - ] - }, - { - "@id": "bts:SynapseIDofGeoMxDSPConfigFile", - "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID of config.ini file generated by the GeoMx DSP workflow.", - "rdfs:label": "SynapseIDofGeoMxDSPConfigFile", - "rdfs:subClassOf": [ + "@id": "bts:MultiscaleLightSheetMicroscopy" + }, { - "@id": "bts:Thing" + "@id": "bts:LightSheetMicroscopy" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse ID of GeoMx DSP Config File", - "sms:required": "sms:false", + "sms:displayName": "File Assay", + "sms:required": "sms:true", "sms:validationRules": [ - "list like", - "regex match syn\\d+" + "list like" ] }, { - "@id": "bts:NanoStringGeoMxDSPImaging", + "@id": "bts:FileLevel", "@type": "rdfs:Class", - "rdfs:comment": "Images acquired by the GeoMx instrument", - "rdfs:label": "NanoStringGeoMxDSPImaging", + "rdfs:comment": "The processing level the file can be mapped to.", + "rdfs:label": "FileLevel", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -251551,185 +252979,158 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoString GeoMx DSP Imaging", - "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:FileView" - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:NanoStringGeoMxDSPImagingId" - }, + "schema:rangeIncludes": [ { - "@id": "bts:Filename" + "@id": "bts:Level1" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key" + "@id": "bts:Level2" }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Key" + "@id": "bts:Level3" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:Level4" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:Auxiliary" }, { - "@id": "bts:GeoMxImagingChannelNames" + "@id": "bts:NotApplicable" }, { - "@id": "bts:GeoMxImagingAOICoordinates" + "@id": "bts:Metadata" } ], + "sms:displayName": "File Level", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:NanoStringGeoMxDSPImagingId", + "@id": "bts:Level1", "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPImagingId", + "rdfs:comment": "TBD", + "rdfs:label": "Level1", "rdfs:subClassOf": [ { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPImaging_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:FileLevel" + }, { - "@id": "bts:Geomx" + "@id": "bts:DSPDatasetLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxDSPLevel1 Key", + "sms:displayName": "Level 1", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPLevel1.NanoStringGeoMxDSPLevel1_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Key", + "@id": "bts:Level2", "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel2Key", + "rdfs:comment": "TBD", + "rdfs:label": "Level2", "rdfs:subClassOf": [ { - "@id": "bts:Geomx" + "@id": "bts:FileLevel" + }, + { + "@id": "bts:DSPDatasetLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxDSPLevel2 Key", + "sms:displayName": "Level 2", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPLevel2.NanoStringGeoMxDSPLevel2_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey", + "@id": "bts:Level3", "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxAuxiliaryFilesKey", + "rdfs:comment": "TBD", + "rdfs:label": "Level3", "rdfs:subClassOf": [ { - "@id": "bts:Geomx" + "@id": "bts:FileLevel" + }, + { + "@id": "bts:DSPDatasetLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxAuxiliaryFiles Key", + "sms:displayName": "Level 3", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxAuxiliaryFiles.NanoStringGeoMxAuxiliaryFiles_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey", + "@id": "bts:Level4", "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMXROISegmentAnnotationKey", + "rdfs:comment": "TBD", + "rdfs:label": "Level4", "rdfs:subClassOf": [ { - "@id": "bts:Geomx" + "@id": "bts:FileLevel" + }, + { + "@id": "bts:DSPDatasetLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMXROISegmentAnnotation Key", + "sms:displayName": "Level 4", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMXROISegmentAnnotation.NanoStringGeoMXROISegmentAnnotation_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:GeoMxImagingChannelNames", + "@id": "bts:Auxiliary", "@type": "rdfs:Class", - "rdfs:comment": "Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.", - "rdfs:label": "GeoMxImagingChannelNames", + "rdfs:comment": "TBD", + "rdfs:label": "Auxiliary", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileLevel" + }, + { + "@id": "bts:DSPDatasetLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "GeoMx Imaging Channel Names", + "sms:displayName": "Auxiliary", "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { - "@id": "bts:GeoMxImagingAOICoordinates", + "@id": "bts:Metadata", "@type": "rdfs:Class", - "rdfs:comment": "Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.", - "rdfs:label": "GeoMxImagingAOICoordinates", + "rdfs:comment": "TBD", + "rdfs:label": "Metadata", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileLevel" + }, + { + "@id": "bts:DSPDatasetLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "GeoMx Imaging AOI Coordinates", + "sms:displayName": "Metadata", "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] + "sms:validationRules": [] }, { - "@id": "bts:NanoStringGeoMxDSPLevel1", + "@id": "bts:FileSpecies", "@type": "rdfs:Class", - "rdfs:comment": "Raw sequencing files from GeoMX experiments", - "rdfs:label": "NanoStringGeoMxDSPLevel1", + "rdfs:comment": "The species the data was collected on. Multiple values permitted, comma separated.", + "rdfs:label": "FileSpecies", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -251738,62 +253139,106 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoString GeoMx DSP Level 1", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "schema:rangeIncludes": [ { - "@id": "bts:FileView" + "@id": "bts:AfricanBushElephant" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotation" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Armadillo" + }, { - "@id": "bts:Component" + "@id": "bts:AsianElephant" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Id" + "@id": "bts:Boar" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:Cat" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:Chicken" }, { - "@id": "bts:Filename" + "@id": "bts:Cow" }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel1Id", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPLevel1Id", - "rdfs:subClassOf": [ + "@id": "bts:Dog" + }, { - "@id": "bts:Thing" + "@id": "bts:Escherichiacoli" + }, + { + "@id": "bts:GuineaPig" + }, + { + "@id": "bts:Horse" + }, + { + "@id": "bts:Human" + }, + { + "@id": "bts:HumanPatient" + }, + { + "@id": "bts:HumanCellLine" + }, + { + "@id": "bts:Mouse" + }, + { + "@id": "bts:Multispecies" + }, + { + "@id": "bts:NotApplicable" + }, + { + "@id": "bts:Opossum" + }, + { + "@id": "bts:Rabbit" + }, + { + "@id": "bts:Rat" + }, + { + "@id": "bts:Rhesusmonkey" + }, + { + "@id": "bts:Sheep" + }, + { + "@id": "bts:Trichoplaxadhaerens" + }, + { + "@id": "bts:Unknown" + }, + { + "@id": "bts:Unspecified" + }, + { + "@id": "bts:Worm" + }, + { + "@id": "bts:Yeast" + }, + { + "@id": "bts:FruitFly" + }, + { + "@id": "bts:Zebrafish" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel1_id", + "sms:displayName": "File Species", "sms:required": "sms:true", "sms:validationRules": [ - "unique" + "list like" ] }, { - "@id": "bts:GeoMxDSPAssayType", + "@id": "bts:FileTumorType", "@type": "rdfs:Class", - "rdfs:comment": "The assay type which was used for the GeoMx DSP pipeline.", - "rdfs:label": "GeoMxDSPAssayType", + "rdfs:comment": "The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.", + "rdfs:label": "FileTumorType", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -251804,27 +253249,575 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:RNAnCounter" + "@id": "bts:CutaneousMelanoma" }, { - "@id": "bts:ProteinnCounter" + "@id": "bts:AcinarCellCarcinoma" }, { - "@id": "bts:ProteinNGS" + "@id": "bts:AcuteLymphoblasticLeukemia" }, { - "@id": "bts:RNANGS" + "@id": "bts:AcuteMonocyticLeukemia" + }, + { + "@id": "bts:AcuteMyeloidLeukemia" + }, + { + "@id": "bts:AcutePromyelocyticLeukemia" + }, + { + "@id": "bts:Adenocarcinoma" + }, + { + "@id": "bts:Angiosarcoma" + }, + { + "@id": "bts:Astrocytoma" + }, + { + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" + }, + { + "@id": "bts:BAcuteLymphoblasticLeukemia" + }, + { + "@id": "bts:B-CellNon-HodgkinLymphoma" + }, + { + "@id": "bts:BarrettEsophagus" + }, + { + "@id": "bts:BasalCellNeoplasm" + }, + { + "@id": "bts:Basal-LikeBreastCarcinoma" + }, + { + "@id": "bts:BiliaryTractCarcinoma" + }, + { + "@id": "bts:BladderCarcinoma" + }, + { + "@id": "bts:BladderNeoplasm" + }, + { + "@id": "bts:BoneNeoplasm" + }, + { + "@id": "bts:BrainNeoplasm" + }, + { + "@id": "bts:BreastAdenocarcinoma" + }, + { + "@id": "bts:BreastCarcinoma" + }, + { + "@id": "bts:BreastNeoplasm" + }, + { + "@id": "bts:Carcinoma" + }, + { + "@id": "bts:CarcinomaInSitu" + }, + { + "@id": "bts:Castration-ResistantProstateCarcinoma" + }, + { + "@id": "bts:CellularSchwannoma" + }, + { + "@id": "bts:CentralNervousSystemCavernousHemangioma" + }, + { + "@id": "bts:CentralNervousSystemNeoplasm" + }, + { + "@id": "bts:CerebellarNeoplasm" + }, + { + "@id": "bts:CervicalCarcinoma" + }, + { + "@id": "bts:CervicalNeoplasm" + }, + { + "@id": "bts:CervicalSmallCellCarcinoma" + }, + { + "@id": "bts:Cholangiocarcinoma" + }, + { + "@id": "bts:Chondroblastoma" + }, + { + "@id": "bts:Choriocarcinoma" + }, + { + "@id": "bts:ChronicLymphocyticLeukemia" + }, + { + "@id": "bts:ChronicMyeloidLeukemia" + }, + { + "@id": "bts:ClearCellRenalCellCarcinoma" + }, + { + "@id": "bts:ColonAdenocarcinoma" + }, + { + "@id": "bts:ColonCarcinoma" + }, + { + "@id": "bts:ColorectalAdenocarcinoma" + }, + { + "@id": "bts:ColorectalAdenoma" + }, + { + "@id": "bts:ColorectalCarcinoma" + }, + { + "@id": "bts:ColorectalNeoplasm" + }, + { + "@id": "bts:CombinedHepatocellularCarcinomaandCholangiocarcinoma" + }, + { + "@id": "bts:Craniopharyngioma" + }, + { + "@id": "bts:CutaneousTCellLymphoma" + }, + { + "@id": "bts:DiffuseLargeB-CellLymphoma" + }, + { + "@id": "bts:DuctalBreastCarcinomaInSitu" + }, + { + "@id": "bts:DysembryoplasticNeuroepithelialNeoplasm" + }, + { + "@id": "bts:EndometrialCarcinoma" + }, + { + "@id": "bts:EndometrialNeoplasm" + }, + { + "@id": "bts:Ependymoma" + }, + { + "@id": "bts:EsophagealAdenocarcinoma" + }, + { + "@id": "bts:EsophagealCarcinoma" + }, + { + "@id": "bts:EsophagealSquamousCellCarcinoma" + }, + { + "@id": "bts:EwingSarcoma" + }, + { + "@id": "bts:ExtraventricularNeurocytoma" + }, + { + "@id": "bts:FibroepithelialPolyp" + }, + { + "@id": "bts:FibrolamellarCarcinoma" + }, + { + "@id": "bts:Fibrosarcoma" + }, + { + "@id": "bts:FollicularLymphoma" + }, + { + "@id": "bts:GallbladderCarcinoma" + }, + { + "@id": "bts:GastricAdenocarcinoma" + }, + { + "@id": "bts:GastricCarcinoma" + }, + { + "@id": "bts:GastricNeoplasm" + }, + { + "@id": "bts:GastroesophagealAdenocarcinoma" + }, + { + "@id": "bts:GastroesophagealJunctionAdenocarcinoma" + }, + { + "@id": "bts:GastrointestinalStromalNeoplasm" + }, + { + "@id": "bts:GiantCellTumor" + }, + { + "@id": "bts:Glioblastoma" + }, + { + "@id": "bts:Glioma" + }, + { + "@id": "bts:HeadandNeckCarcinoma" + }, + { + "@id": "bts:HeadandNeckNeoplasm" + }, + { + "@id": "bts:HeadandNeckSquamousCellCarcinoma" + }, + { + "@id": "bts:HepatocellularCarcinoma" + }, + { + "@id": "bts:HighGradeOvarianSerousAdenocarcinoma" + }, + { + "@id": "bts:HistiocyticSarcoma" + }, + { + "@id": "bts:HodgkinLymphoma" + }, + { + "@id": "bts:IntestinalNeoplasm" + }, + { + "@id": "bts:IntrahepaticCholangiocarcinoma" + }, + { + "@id": "bts:InvasiveDuctalBreastCarcinoma" + }, + { + "@id": "bts:KaposiSarcoma" + }, + { + "@id": "bts:Leiomyoma" + }, + { + "@id": "bts:Leukemia" + }, + { + "@id": "bts:LiverandIntrahepaticBileDuctCarcinoma" + }, + { + "@id": "bts:LiverandIntrahepaticBileDuctNeoplasm" + }, + { + "@id": "bts:LowGradeGlioma" + }, + { + "@id": "bts:LuminalABreastCarcinoma" + }, + { + "@id": "bts:LungAdenocarcinoma" + }, + { + "@id": "bts:LungCarcinoma" + }, + { + "@id": "bts:LungNeoplasm" + }, + { + "@id": "bts:LungNon-SmallCellCarcinoma" + }, + { + "@id": "bts:LungSmallCellCarcinoma" + }, + { + "@id": "bts:LungSquamousCellCarcinoma" + }, + { + "@id": "bts:LymphoidLeukemia" + }, + { + "@id": "bts:Lymphoma" + }, + { + "@id": "bts:MalignantBrainNeoplasm" + }, + { + "@id": "bts:MalignantDigestiveSystemNeoplasm" + }, + { + "@id": "bts:MalignantGenitourinarySystemNeoplasm" + }, + { + "@id": "bts:MalignantGlioma" + }, + { + "@id": "bts:MalignantNeoplasm" + }, + { + "@id": "bts:MalignantOvarianNeoplasm" + }, + { + "@id": "bts:MalignantPancreaticNeoplasm" + }, + { + "@id": "bts:MalignantPeripheralNerveSheathTumor" + }, + { + "@id": "bts:MalignantPeritonealNeoplasm" + }, + { + "@id": "bts:MalignantSkinNeoplasm" + }, + { + "@id": "bts:MantleCellLymphoma" + }, + { + "@id": "bts:MarginalZoneLymphoma" + }, + { + "@id": "bts:Medulloblastoma" + }, + { + "@id": "bts:Melanoma" + }, + { + "@id": "bts:Meningioma" + }, + { + "@id": "bts:Mesothelioma" + }, + { + "@id": "bts:MultipleMyeloma" + }, + { + "@id": "bts:MycosisFungoides" + }, + { + "@id": "bts:MyeloidLeukemia" + }, + { + "@id": "bts:MyeloidNeoplasm" + }, + { + "@id": "bts:MyeloproliferativeNeoplasm" + }, + { + "@id": "bts:Myoepithelioma" + }, + { + "@id": "bts:NasopharyngealCarcinoma" + }, + { + "@id": "bts:Neuroblastoma" + }, + { + "@id": "bts:NeuroendocrineNeoplasm" + }, + { + "@id": "bts:NeuroepithelialNeoplasm" + }, + { + "@id": "bts:Neurofibroma" + }, + { + "@id": "bts:Non-FunctioningPituitaryGlandAdenoma" + }, + { + "@id": "bts:Non-HodgkinLymphoma" + }, + { + "@id": "bts:NotApplicable" + }, + { + "@id": "bts:OralCavityNeoplasm" + }, + { + "@id": "bts:OralCavitySquamousCellCarcinoma" + }, + { + "@id": "bts:OropharyngealNeoplasm" + }, + { + "@id": "bts:Osteosarcoma" + }, + { + "@id": "bts:OvarianAdenosarcoma" + }, + { + "@id": "bts:OvarianCarcinoma" + }, + { + "@id": "bts:OvarianNeoplasm" + }, + { + "@id": "bts:OvarianSerousAdenocarcinoma" + }, + { + "@id": "bts:Pan-cancer" + }, + { + "@id": "bts:PancreaticAdenocarcinoma" + }, + { + "@id": "bts:PancreaticCarcinoma" + }, + { + "@id": "bts:PancreaticDuctalAdenocarcinoma" + }, + { + "@id": "bts:PancreaticNeoplasm" + }, + { + "@id": "bts:PancreaticNeuroendocrineCarcinoma" + }, + { + "@id": "bts:PendingAnnotation" + }, + { + "@id": "bts:PenileCarcinoma" + }, + { + "@id": "bts:Pheochromocytoma" + }, + { + "@id": "bts:PilocyticAstrocytoma" + }, + { + "@id": "bts:PituitaryGlandAdenoma" + }, + { + "@id": "bts:PlasmablasticLymphoma" + }, + { + "@id": "bts:Plasmacytoma" + }, + { + "@id": "bts:PlexiformSchwannoma" + }, + { + "@id": "bts:PrecursorB-celllymphoblasticleukemia" + }, + { + "@id": "bts:PrimaryCentralNervousSystemLymphoma" + }, + { + "@id": "bts:PrimaryMyelofibrosis" + }, + { + "@id": "bts:ProstateAdenocarcinoma" + }, + { + "@id": "bts:ProstateCarcinoma" + }, + { + "@id": "bts:ProstateNeoplasm" + }, + { + "@id": "bts:RectalAdenocarcinoma" + }, + { + "@id": "bts:RenalCellCarcinoma" + }, + { + "@id": "bts:Retinoblastoma" + }, + { + "@id": "bts:Rhabdomyosarcoma" + }, + { + "@id": "bts:Rosette-FormingGlioneuronalTumor" + }, + { + "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma" + }, + { + "@id": "bts:Sarcoma" + }, + { + "@id": "bts:Schwannoma" + }, + { + "@id": "bts:SerousTubalIntraepithelialCarcinoma" + }, + { + "@id": "bts:SinonasalSquamousCellCarcinoma" + }, + { + "@id": "bts:SkinCarcinoma" + }, + { + "@id": "bts:SkinNeoplasm" + }, + { + "@id": "bts:SoftTissueSarcoma" + }, + { + "@id": "bts:SquamousCellCarcinoma" + }, + { + "@id": "bts:SynovialSarcoma" + }, + { + "@id": "bts:TAcuteLymphoblasticLeukemia" + }, + { + "@id": "bts:T-CellLymphoma" + }, + { + "@id": "bts:Teratoma" + }, + { + "@id": "bts:TesticularEmbryonalCarcinoma" + }, + { + "@id": "bts:ThyroidGlandAnaplasticCarcinoma" + }, + { + "@id": "bts:ThyroidGlandCarcinoma" + }, + { + "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures" + }, + { + "@id": "bts:Triple-NegativeBreastCarcinoma" + }, + { + "@id": "bts:UrothelialCarcinoma" + }, + { + "@id": "bts:UterineAdenosarcoma" + }, + { + "@id": "bts:UvealMelanoma" + }, + { + "@id": "bts:UvealNeoplasm" + }, + { + "@id": "bts:VascularNeoplasm" + }, + { + "@id": "bts:Not-Applicable" + }, + { + "@id": "bts:PlexiformNeurofibroma" } ], - "sms:displayName": "GeoMx DSP Assay Type", + "sms:displayName": "File Tumor Type", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotation", + "@id": "bts:FileTissue", "@type": "rdfs:Class", - "rdfs:comment": "GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates.", - "rdfs:label": "NanoStringGeoMXROISegmentAnnotation", + "rdfs:comment": "Tissue type(s) associated with the file. Multiple values permitted, comma separated.", + "rdfs:label": "FileTissue", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -251833,256 +253826,361 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoString GeoMX ROI Segment Annotation", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "schema:rangeIncludes": [ { - "@id": "bts:Biospecimen" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Gonad" + }, { - "@id": "bts:Component" + "@id": "bts:AbdominalEsophagus" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationId" + "@id": "bts:AdiposeTissue" }, { - "@id": "bts:BiospecimenKey" + "@id": "bts:AdrenalGland" + }, + { + "@id": "bts:Alveolus" + }, + { + "@id": "bts:Aorta" + }, + { + "@id": "bts:Artery" + }, + { + "@id": "bts:AscendingColon" + }, + { + "@id": "bts:BileDuct" + }, + { + "@id": "bts:Bladder" + }, + { + "@id": "bts:Blood" + }, + { + "@id": "bts:BloodVessel" + }, + { + "@id": "bts:Bone" + }, + { + "@id": "bts:BoneMarrow" + }, + { + "@id": "bts:Brain" + }, + { + "@id": "bts:Breast" + }, + { + "@id": "bts:Caecum" + }, + { + "@id": "bts:Cancer-AssociatedFibroblast" + }, + { + "@id": "bts:Cardia" + }, + { + "@id": "bts:Cartilage" + }, + { + "@id": "bts:CervixUteri" + }, + { + "@id": "bts:Choroid" + }, + { + "@id": "bts:Colon" + }, + { + "@id": "bts:ConnectiveandSoftTissue" + }, + { + "@id": "bts:Cornea" + }, + { + "@id": "bts:Duodenum" + }, + { + "@id": "bts:Ear" + }, + { + "@id": "bts:Embryo" + }, + { + "@id": "bts:EmbryonicHeart" + }, + { + "@id": "bts:Endocervix" + }, + { + "@id": "bts:Endometrium" + }, + { + "@id": "bts:Endothelium" + }, + { + "@id": "bts:Epithelium" + }, + { + "@id": "bts:Esophagus" + }, + { + "@id": "bts:Eye" + }, + { + "@id": "bts:FallopianTube" + }, + { + "@id": "bts:Foreskin" + }, + { + "@id": "bts:FrontalLobe" + }, + { + "@id": "bts:GastroesophagealJunction" + }, + { + "@id": "bts:GastrointestinalTract" + }, + { + "@id": "bts:Genitourinary" + }, + { + "@id": "bts:HairFollicle" + }, + { + "@id": "bts:HeadandNeck" + }, + { + "@id": "bts:Heart" + }, + { + "@id": "bts:HeartMuscle" + }, + { + "@id": "bts:HematopoieticSystem" + }, + { + "@id": "bts:Hippocampus" + }, + { + "@id": "bts:Intestine" + }, + { + "@id": "bts:Intra-AbdominalLymphNodes" + }, + { + "@id": "bts:IntrathoracicLymphNodes" + }, + { + "@id": "bts:Joint" + }, + { + "@id": "bts:Kidney" + }, + { + "@id": "bts:Larynx" + }, + { + "@id": "bts:Ligament" + }, + { + "@id": "bts:Liver" + }, + { + "@id": "bts:Lung" + }, + { + "@id": "bts:Lymph" + }, + { + "@id": "bts:LymphNode" + }, + { + "@id": "bts:LymphNodesofAxillaorArm" + }, + { + "@id": "bts:LymphNodesofInguinalRegionorLeg" + }, + { + "@id": "bts:LymphaticSystem" + }, + { + "@id": "bts:LymphoidTissue" + }, + { + "@id": "bts:MainBronchus" + }, + { + "@id": "bts:MammaryGland" + }, + { + "@id": "bts:Meninges" + }, + { + "@id": "bts:Mesenchyme" + }, + { + "@id": "bts:Mucosa" + }, + { + "@id": "bts:Muscle" + }, + { + "@id": "bts:NasalCavity" + }, + { + "@id": "bts:NervousSystem" }, { - "@id": "bts:GeoMxScanname" + "@id": "bts:NotApplicable" }, { - "@id": "bts:GeoMxROIName" + "@id": "bts:OlfactoryMucosa" }, { - "@id": "bts:GeoMxAOIName" + "@id": "bts:Omentum" }, { - "@id": "bts:GeoMxTags" + "@id": "bts:OralCavity" }, { - "@id": "bts:GeoMxROIXCoordinate" + "@id": "bts:OralMucosa" }, { - "@id": "bts:GeoMxROIYCoordinate" + "@id": "bts:Ovary" }, { - "@id": "bts:GeoMxAOIXCoordinate" + "@id": "bts:Pancreas" }, { - "@id": "bts:GeoMxAOIYCoordinate" + "@id": "bts:PelvicLymphNodes" }, { - "@id": "bts:GeoMxQCstatus" + "@id": "bts:PendingAnnotation" }, { - "@id": "bts:GeoMxScanHeight" + "@id": "bts:PeriodontalLigament" }, { - "@id": "bts:GeoMxScanWidth" + "@id": "bts:PeripheralNerves" }, { - "@id": "bts:GeoMxScanOffsetX" + "@id": "bts:Peritoneum" }, { - "@id": "bts:GeoMxScanOffsetY" + "@id": "bts:Pharynx" }, { - "@id": "bts:GeoMxBindingDensity" + "@id": "bts:PituitaryGland" }, { - "@id": "bts:GeoMxPositivenormfactor" + "@id": "bts:Placenta" }, { - "@id": "bts:GeoMxSurfacearea" + "@id": "bts:Pleura" }, { - "@id": "bts:GeoMxNucleicount" + "@id": "bts:ProstateGland" }, { - "@id": "bts:GeoMxTissueStain" + "@id": "bts:Rectum" }, { - "@id": "bts:GeoMxSlidename" + "@id": "bts:ReproductiveSystem" }, { - "@id": "bts:NGSRawreads" + "@id": "bts:RespiratorySystem" }, { - "@id": "bts:NGSStitchedreads" + "@id": "bts:SalivaryGland" }, { - "@id": "bts:NGSAlignedreads" + "@id": "bts:Sclera" }, { - "@id": "bts:NGSDeduplicatedreads" + "@id": "bts:SinonasalTract" }, { - "@id": "bts:NGSTrimmedreads" + "@id": "bts:Skin" }, { - "@id": "bts:NGSSequencingCoverage" + "@id": "bts:SmallIntestine" }, { - "@id": "bts:NGSMapQ30" + "@id": "bts:SpinalCord" }, { - "@id": "bts:GeoMxNegativecountmean" + "@id": "bts:Spleen" }, { - "@id": "bts:GeoMxNoTemplateControlcount" + "@id": "bts:Stomach" }, { - "@id": "bts:GeoMxExcludedOutlierProbes" + "@id": "bts:SynovialMembrane" }, { - "@id": "bts:GeoMxLimitofQuantification" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:RNAnCounter", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RNAnCounter", - "rdfs:subClassOf": [ - { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RNA nCounter", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ProteinnCounter", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ProteinnCounter", - "rdfs:subClassOf": [ + "@id": "bts:Tendon" + }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Protein nCounter", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ProteinNGS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ProteinNGS", - "rdfs:subClassOf": [ + "@id": "bts:Testis" + }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Protein NGS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RNANGS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RNANGS", - "rdfs:subClassOf": [ + "@id": "bts:Thymus" + }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RNA NGS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel2", - "@type": "rdfs:Class", - "rdfs:comment": "Processed count conversion (DCC/RCC) files from GeoMX experiments", - "rdfs:label": "NanoStringGeoMxDSPLevel2", - "rdfs:subClassOf": [ + "@id": "bts:ThyroidGland" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoString GeoMx DSP Level 2", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:Tongue" + }, { - "@id": "bts:FileView" + "@id": "bts:Tonsil" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles" - } - ], - "sms:requiresDependency": [ + "@id": "bts:Trachea" + }, { - "@id": "bts:Component" + "@id": "bts:UmbilicalCord" }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Id" + "@id": "bts:Unspecified" }, { - "@id": "bts:Filename" + "@id": "bts:Uterus" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key" + "@id": "bts:Vagina" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:VascularEndothelium" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:Vein" }, { - "@id": "bts:GeoMxDSPAssayType" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel2Id", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPLevel2Id", - "rdfs:subClassOf": [ + "@id": "bts:Vertebra" + }, { - "@id": "bts:Thing" + "@id": "bts:PeripheralBloodMononuclearCell" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel2_id", - "sms:required": "sms:true", + "sms:displayName": "File Tissue", + "sms:required": "sms:false", "sms:validationRules": [ - "unique" + "list like" ] }, { - "@id": "bts:NanoStringGeoMxDSPLevel3", + "@id": "bts:FileView", "@type": "rdfs:Class", - "rdfs:comment": "Files contain processed count data from the NanoString GeoMx DSP Pipeline.", - "rdfs:label": "NanoStringGeoMxDSPLevel3", + "rdfs:comment": "The denormalized manifest for file submission.", + "rdfs:label": "FileView", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -252091,14 +254189,11 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoString GeoMx DSP Level 3", + "sms:displayName": "File View", "sms:required": "sms:false", "sms:requiresComponent": [ { - "@id": "bts:FileView" - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles" + "@id": "bts:Study" } ], "sms:requiresDependency": [ @@ -252106,349 +254201,82 @@ "@id": "bts:Component" }, { - "@id": "bts:NanoStringGeoMxDSPLevel3Id" + "@id": "bts:FileViewId" }, { - "@id": "bts:Filename" + "@id": "bts:BiospecimenKey" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key" + "@id": "bts:StudyKey" }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Key" + "@id": "bts:DatasetViewKey" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel3Id", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPLevel3Id", - "rdfs:subClassOf": [ + "@id": "bts:Filename" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel3_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMXROISegmentAnnotationId", - "rdfs:subClassOf": [ + "@id": "bts:FileAlias" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMXROISegmentAnnotation_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:GeoMxScanname", - "@type": "rdfs:Class", - "rdfs:comment": "GeoMx Scan name (as appears in Segment Summary)", - "rdfs:label": "GeoMxScanname", - "rdfs:subClassOf": [ + "@id": "bts:FileDescription" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan name", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:GeoMxROIName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of Region of Interest corresponding to file. Multiple names should be comma-separated", - "rdfs:label": "GeoMxROIName", - "rdfs:subClassOf": [ + "@id": "bts:FileDesign" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx ROI Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GeoMxAOIName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of Area of Illumination corresponding to file. Multiple names should be comma-separated", - "rdfs:label": "GeoMxAOIName", - "rdfs:subClassOf": [ + "@id": "bts:FileLevel" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx AOI Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GeoMxTags", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GeoMxTags", - "rdfs:subClassOf": [ + "@id": "bts:FileAssay" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Tags", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GeoMxROIXCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Region of Interest X location within the image", - "rdfs:label": "GeoMxROIXCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:FileSpecies" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx ROI X Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxROIYCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Region of Interest Y location within the image", - "rdfs:label": "GeoMxROIYCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:FileTumorType" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx ROI Y Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxAOIXCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Area of Illumination X location within the image", - "rdfs:label": "GeoMxAOIXCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:FileTissue" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx AOI X Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxAOIYCoordinate", - "@type": "rdfs:Class", - "rdfs:comment": "Area of Illumination Y location within the image", - "rdfs:label": "GeoMxAOIYCoordinate", - "rdfs:subClassOf": [ + "@id": "bts:FileAnatomicSite" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx AOI Y Coordinate", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxQCstatus", - "@type": "rdfs:Class", - "rdfs:comment": "ROI quality control flag as reported by the application", - "rdfs:label": "GeoMxQCstatus", - "rdfs:subClassOf": [ + "@id": "bts:FileUrl" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx QC status", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GeoMxScanHeight", - "@type": "rdfs:Class", - "rdfs:comment": "Height of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanHeight", - "rdfs:subClassOf": [ + "@id": "bts:FileFormat" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Height", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxScanWidth", - "@type": "rdfs:Class", - "rdfs:comment": "Width of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanWidth", - "rdfs:subClassOf": [ + "@id": "bts:DataUseCodes" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Width", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxScanOffsetX", - "@type": "rdfs:Class", - "rdfs:comment": "Offset X of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanOffsetX", - "rdfs:subClassOf": [ + "@id": "bts:FileLongitudinalGroup" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Offset X", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxScanOffsetY", - "@type": "rdfs:Class", - "rdfs:comment": "Offset Y of the scan for GeoMx Analysis", - "rdfs:label": "GeoMxScanOffsetY", - "rdfs:subClassOf": [ + "@id": "bts:FileLongitudinalEventType" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Scan Offset Y", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxBindingDensity", - "@type": "rdfs:Class", - "rdfs:comment": "The binding density as reported by the application", - "rdfs:label": "GeoMxBindingDensity", - "rdfs:subClassOf": [ + "@id": "bts:FileLongitudinalSequenceIdentifier" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Binding Density", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxPositivenormfactor", - "@type": "rdfs:Class", - "rdfs:comment": "The Positive Control Normalization factor calculated using pos-hyb controls", - "rdfs:label": "GeoMxPositivenormfactor", - "rdfs:subClassOf": [ + "@id": "bts:FileLongitudinalTimeElapsedUnit" + }, { - "@id": "bts:Thing" + "@id": "bts:FileLongitudinalSequentialTimeElapsed" + }, + { + "@id": "bts:FileLongitudinalTotalTimeElapsed" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Positive norm factor", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] + "sms:validationRules": [] }, { - "@id": "bts:GeoMxSurfacearea", + "@id": "bts:FileViewId", "@type": "rdfs:Class", - "rdfs:comment": "Surface area of the ROI in square microns (Β΅m2)", - "rdfs:label": "GeoMxSurfacearea", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "FileViewId", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -252457,72 +254285,55 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "GeoMx Surface area", - "sms:required": "sms:false", + "sms:displayName": "FileView_id", + "sms:required": "sms:true", "sms:validationRules": [ - "num" + "unique" ] }, { - "@id": "bts:GeoMxNucleicount", + "@id": "bts:BiospecimenKey", "@type": "rdfs:Class", - "rdfs:comment": "Number of nuclei detected in the segment (if applicable)", - "rdfs:label": "GeoMxNucleicount", + "rdfs:comment": "Unique Biospecimen_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.", + "rdfs:label": "BiospecimenKey", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "GeoMx Nuclei count", + "sms:displayName": "Biospecimen Key", "sms:required": "sms:false", "sms:validationRules": [ - "num" + "matchAtLeastOne Biospecimen.Biospecimen_id Value" ] }, { - "@id": "bts:GeoMxTissueStain", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GeoMxTissueStain", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Tissue Stain", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GeoMxSlidename", + "@id": "bts:Filename", "@type": "rdfs:Class", - "rdfs:comment": "Similar to a Run ID, the slide name indicates the slide a given ROI is linked to (as reported in Segment Summary).", - "rdfs:label": "GeoMxSlidename", + "rdfs:comment": "The path of a file in Synapse, relative to the project. The file associated with the path will be annotated with attributes contained in this sheet.", + "rdfs:label": "Filename", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:Shared" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "GeoMx Slide name", - "sms:required": "sms:false", + "sms:displayName": "Filename", + "sms:required": "sms:true", "sms:validationRules": [ "str" ] }, { - "@id": "bts:NGSRawreads", + "@id": "bts:FileAlias", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSRawreads", + "rdfs:comment": "A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.", + "rdfs:label": "FileAlias", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -252531,15 +254342,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Raw reads", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "File Alias", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:NGSStitchedreads", + "@id": "bts:FileAnatomicSite", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSStitchedreads", + "rdfs:comment": "The anatomic site associated with the data contained in this file.", + "rdfs:label": "FileAnatomicSite", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -252548,11396 +254361,10308 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NGS Stitched reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSAlignedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSAlignedreads", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Aligned reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSDeduplicatedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSDeduplicatedreads", - "rdfs:subClassOf": [ + "@id": "bts:Accessorysinus;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Deduplicated reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSTrimmedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSTrimmedreads", - "rdfs:subClassOf": [ + "@id": "bts:Abdominalesophagus" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Trimmed reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSSequencingCoverage", - "@type": "rdfs:Class", - "rdfs:comment": "Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length)", - "rdfs:label": "NGSSequencingCoverage", - "rdfs:subClassOf": [ + "@id": "bts:Ascendingcolon" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Sequencing Coverage", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSMapQ30", - "@type": "rdfs:Class", - "rdfs:comment": "Number of reads with Quality >= 30.", - "rdfs:label": "NGSMapQ30", - "rdfs:subClassOf": [ + "@id": "bts:Appendix" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS MapQ30", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxNegativecountmean", - "@type": "rdfs:Class", - "rdfs:comment": "The geometric mean of the unique negative probes in a GeoMx panel that do not target mRNA and establish the background count level per segment", - "rdfs:label": "GeoMxNegativecountmean", - "rdfs:subClassOf": [ + "@id": "bts:Aorticbodyandotherparaganglia" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Negative count mean", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxNoTemplateControlcount", - "@type": "rdfs:Class", - "rdfs:comment": "The number of reads detected by the GeoMx probe panel in the control associated with this ROI.", - "rdfs:label": "GeoMxNoTemplateControlcount", - "rdfs:subClassOf": [ + "@id": "bts:Anteriorwallofnasopharynx" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx No Template Control count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxExcludedOutlierProbes", - "@type": "rdfs:Class", - "rdfs:comment": "The list of probes excluded from analysis.", - "rdfs:label": "GeoMxExcludedOutlierProbes", - "rdfs:subClassOf": [ + "@id": "bts:Anteriorwallofbladder" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Excluded Outlier Probes", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxLimitofQuantification", - "@type": "rdfs:Class", - "rdfs:comment": "The calculated limit of quantification associated with the segment.", - "rdfs:label": "GeoMxLimitofQuantification", - "rdfs:subClassOf": [ + "@id": "bts:Anteriorsurfaceofepiglottis" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Limit of Quantification", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxInSituNegativemedian", - "@type": "rdfs:Class", - "rdfs:comment": "Is the median of all negative control probes for a given segment. A measure of signal to background for each segment.", - "rdfs:label": "GeoMxInSituNegativemedian", - "rdfs:subClassOf": [ + "@id": "bts:Anteriormediastinum" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx In Situ Negative median", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxBiologicalprobemedian", - "@type": "rdfs:Class", - "rdfs:comment": "Is the median count from all probes except the negative control probes. A measure of signal to background for each segment", - "rdfs:label": "GeoMxBiologicalprobemedian", - "rdfs:subClassOf": [ + "@id": "bts:Anteriorfloorofmouth" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Biological probe median", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GeoMxSequencingSaturation", - "@type": "rdfs:Class", - "rdfs:comment": "The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. More specifically, this is the fraction of confidently mapped, valid spot-barcode, valid UMI reads that had a non-unique (spot-barcode, UMI, gene).", - "rdfs:label": "GeoMxSequencingSaturation", - "rdfs:subClassOf": [ + "@id": "bts:Anterior2/3oftongue;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GeoMx Sequencing Saturation", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GrantName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of the grant", - "rdfs:label": "GrantName", - "rdfs:subClassOf": [ + "@id": "bts:Analcanal" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Grant Name", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:GrantNumber", - "@type": "rdfs:Class", - "rdfs:comment": "Number of the grant (i.e. \"CA------\" format)", - "rdfs:label": "GrantNumber", - "rdfs:subClassOf": [ + "@id": "bts:AmpullaofVater" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Grant Number", - "sms:required": "sms:true", - "sms:validationRules": [ - "regex search ^CA\\d{6}$" - ] - }, - { - "@id": "bts:GrantAbstract", - "@type": "rdfs:Class", - "rdfs:comment": "Abstract for the grant", - "rdfs:label": "GrantAbstract", - "rdfs:subClassOf": [ + "@id": "bts:Gum;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Grant Abstract", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:GrantType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of grant", - "rdfs:label": "GrantType", - "rdfs:subClassOf": [ + "@id": "bts:Greatercurvatureofstomach;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Glottis" + }, { - "@id": "bts:R01" + "@id": "bts:Glanspenis" }, { - "@id": "bts:R21" + "@id": "bts:Gastrointestinaltract;NOS" }, { - "@id": "bts:R37" + "@id": "bts:Bone;NOS" }, { - "@id": "bts:U01" + "@id": "bts:Bonemarrow" }, { - "@id": "bts:U24" + "@id": "bts:Bodyofstomach" }, { - "@id": "bts:U54" - } - ], - "sms:displayName": "Grant Type", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:R01", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "R01", - "rdfs:subClassOf": [ + "@id": "bts:Bodyofpenis" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "R01", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:R21", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "R21", - "rdfs:subClassOf": [ + "@id": "bts:Bodyofpancreas" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "R21", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:R37", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "R37", - "rdfs:subClassOf": [ + "@id": "bts:Blood" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "R37", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:U01", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "U01", - "rdfs:subClassOf": [ + "@id": "bts:Bladderneck" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "U01", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:U24", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "U24", - "rdfs:subClassOf": [ + "@id": "bts:Biliarytract;NOS" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "U24", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:U54", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "U54", - "rdfs:subClassOf": [ + "@id": "bts:Baseoftongue;NOS" + }, { - "@id": "bts:GrantType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "U54", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GrantViewId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "GrantViewId", - "rdfs:subClassOf": [ + "@id": "bts:Conjunctiva" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GrantView_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:GrantThemeName", - "@type": "rdfs:Class", - "rdfs:comment": "Theme(s) associated with the grant. 1...*", - "rdfs:label": "GrantThemeName", - "rdfs:subClassOf": [ + "@id": "bts:Commissureoflip" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Colon;NOS" + }, { - "@id": "bts:ComputationalModelDevelopment" + "@id": "bts:Cloacogeniczone" }, { - "@id": "bts:ComputationalResource" + "@id": "bts:Clitoris" }, { - "@id": "bts:DrugResistance/Sensitivity" + "@id": "bts:Ciliarybody" }, { - "@id": "bts:Epigenetics" + "@id": "bts:Choroid" }, { - "@id": "bts:Evolution" + "@id": "bts:Cheekmucosa" }, { - "@id": "bts:ExperimentalModelDevelopment" + "@id": "bts:Cervixuteri" }, { - "@id": "bts:Heterogeneity" + "@id": "bts:Cervicalesophagus" }, { - "@id": "bts:Immunotherapy" + "@id": "bts:Cerebrum" }, { - "@id": "bts:Mechano-genetics" + "@id": "bts:Cerebralmeninges" }, { - "@id": "bts:Mechano-resistance" + "@id": "bts:Cerebellum;NOS" }, { - "@id": "bts:Metabolism" + "@id": "bts:Cecum" }, { - "@id": "bts:Metastasis" + "@id": "bts:Abdomen;NOS" }, { - "@id": "bts:Method/AssayDevelopment" + "@id": "bts:Acousticnerve" }, { - "@id": "bts:Microenvironment" + "@id": "bts:Adrenalgland;NOS" }, { - "@id": "bts:OncogenicStress" + "@id": "bts:Anus;NOS" }, { - "@id": "bts:PlatformDevelopment" + "@id": "bts:Autonomicnervoussystem;NOS" }, { - "@id": "bts:TumorProgression" + "@id": "bts:Dorsalsurfaceoftongue;NOS" }, { - "@id": "bts:Tumor-Immune" - } - ], - "sms:displayName": "Grant Theme Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:GrantInstitutionName", - "@type": "rdfs:Class", - "rdfs:comment": "The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*", - "rdfs:label": "GrantInstitutionName", - "rdfs:subClassOf": [ + "@id": "bts:Domeofbladder" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Descendingcolon" + }, { - "@id": "bts:AlbertEinsteinCollegeofMedicine" + "@id": "bts:Descendedtestis" }, { - "@id": "bts:ArizonaStateUniversity" + "@id": "bts:Craniopharyngealduct" }, { - "@id": "bts:AuburnUniversity" + "@id": "bts:Cranialnerve;NOS" }, { - "@id": "bts:BarrowNeurologicalInstitute" + "@id": "bts:Cortexofadrenalgland" }, { - "@id": "bts:BaylorCollegeOfMedicine" + "@id": "bts:Corpusuteri" }, { - "@id": "bts:BeckmanResearchInstituteofCityofHope" + "@id": "bts:Cornea;NOS" }, { - "@id": "bts:BethIsraelDeaconessHospital" + "@id": "bts:Connective;subcutaneousandothersofttissues;NOS" }, { - "@id": "bts:BostonMedicalCenter" + "@id": "bts:Connective;subcutaneousandothersofttissuesofupperlimbandshoulder" }, { - "@id": "bts:BostonUniversity" + "@id": "bts:Connective;subcutaneousandothersofttissuesoftrunk;NOS" }, { - "@id": "bts:BrighamandWomensHospital" + "@id": "bts:Connective;subcutaneousandothersofttissuesofthorax" }, { - "@id": "bts:CaliforniaInstituteofTechnology" + "@id": "bts:Connective;subcutaneousandothersofttissuesofpelvis" }, { - "@id": "bts:ChildrensHospitalofPhiladelphia" + "@id": "bts:Connective;subcutaneousandothersofttissuesoflowerlimbandhip" }, { - "@id": "bts:CityOfHope" + "@id": "bts:Connective;subcutaneousandothersofttissuesofhead;face;andneck" }, { - "@id": "bts:ClemsonUniversity" + "@id": "bts:Connective;subcutaneousandothersofttissuesofabdomen" }, { - "@id": "bts:ClevelandClinic" + "@id": "bts:Bonesofskullandfaceandassociatedjoints" }, { - "@id": "bts:ColdSpringHarborLaboratory" + "@id": "bts:Caudaequina" }, { - "@id": "bts:ColumbiaUniversity" + "@id": "bts:Carotidbody" }, { - "@id": "bts:CornellUniversity" + "@id": "bts:Cardia;NOS" }, { - "@id": "bts:Dana-FarberCancerInstitute" + "@id": "bts:Broadligament" }, { - "@id": "bts:DartmouthCollege" + "@id": "bts:Breast;NOS" }, { - "@id": "bts:DukeUniversity" + "@id": "bts:Branchialcleft" }, { - "@id": "bts:EmoryUniversity" + "@id": "bts:Brain;NOS" }, { - "@id": "bts:GeorgiaInstituteofTechnology" + "@id": "bts:Brainstem" }, { - "@id": "bts:HarvardMedicalSchool" + "@id": "bts:Borderoftongue" }, { - "@id": "bts:HarvardUniversity" + "@id": "bts:Ethmoidsinus" }, { - "@id": "bts:HebrewUniversityofJerusalem" + "@id": "bts:Esophagus;NOS" }, { - "@id": "bts:HoustonMethodist" + "@id": "bts:Epididymis" }, { - "@id": "bts:IndianaUniversity" + "@id": "bts:Endometrium" }, { - "@id": "bts:IndianaUniversity-PurdueUniversityIndianapolis" + "@id": "bts:Endocrinegland;NOS" }, { - "@id": "bts:InstituteforSystemsBiology" + "@id": "bts:Endocervix" }, { - "@id": "bts:JacksonLaboratory" + "@id": "bts:Duodenum" }, { - "@id": "bts:JohnsHopkinsUniversity" + "@id": "bts:Eyelid" }, { - "@id": "bts:LurieChildren'sHospital" + "@id": "bts:Eye;NOS" }, { - "@id": "bts:MassachusettsGeneralHospital" + "@id": "bts:Extrahepaticbileduct" }, { - "@id": "bts:MassachusettsInstituteofTechnology" + "@id": "bts:Externalupperlip" }, { - 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"sms:displayName": "MetNet", + "sms:displayName": "External lip; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NCI", + "@id": "bts:Externalear", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NCI", + "rdfs:label": "Externalear", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - }, - { - "@id": "bts:ProjectConsortiumName" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NCI", + "sms:displayName": "External ear", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NCIClinicalandTranslationalExploratory/DevelopmentalStudies", + "@id": "bts:Exocervix", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NCIClinicalandTranslationalExploratory/DevelopmentalStudies", + "rdfs:label": "Exocervix", "rdfs:subClassOf": [ { - "@id": "bts:GrantConsortiumName" - }, - { - "@id": "bts:PersonConsortiumName" - 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face and neck", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel2Id", + "@id": "bts:Bladder;NOS", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel2Id", + "rdfs:comment": "TBD", + "rdfs:label": "Bladder;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel2_id", - "sms:required": "sms:true", + "sms:displayName": "Bladder; NOS", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel1Key", + "@id": "bts:Centralportionofbreast", "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel1Key", + "rdfs:comment": "TBD", + "rdfs:label": "Centralportionofbreast", "rdfs:subClassOf": [ { - "@id": "bts:Imaging" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel1 Key", + "sms:displayName": "Central portion of breast", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel1.ImagingLevel1_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImageObjective", + "@id": "bts:Femalegenitaltract;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Objective lens identifier", - "rdfs:label": "ImageObjective", + "rdfs:comment": "TBD", + "rdfs:label": "Femalegenitaltract;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Objective", + "sms:displayName": "Female genital tract; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageNominalMagnification", + "@id": "bts:Malegenitalorgans;NOS", "@type": "rdfs:Class", - "rdfs:comment": "The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units)", - "rdfs:label": "ImageNominalMagnification", + "rdfs:comment": "TBD", + "rdfs:label": "Malegenitalorgans;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Nominal Magnification", + "sms:displayName": "Male genital organs; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageLenseAperture", + "@id": "bts:Nasopharynx;NOS", "@type": "rdfs:Class", - "rdfs:comment": "The numerical aperture of the lens. Floating point value > 0.", - "rdfs:label": "ImageLenseAperture", + "rdfs:comment": "TBD", + "rdfs:label": "Nasopharynx;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Lense Aperture", + "sms:displayName": "Nasopharynx; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageWorkingDistance", + "@id": "bts:Pituitarygland", "@type": "rdfs:Class", - "rdfs:comment": "The working distance of the lens, expressed as a floating point number. Floating point > 0.", - "rdfs:label": "ImageWorkingDistance", + "rdfs:comment": "TBD", + "rdfs:label": "Pituitarygland", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Working Distance", + "sms:displayName": "Pituitary gland", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageWorkingDistanceUnit", + "@id": "bts:Pinealgland", "@type": "rdfs:Class", - "rdfs:comment": "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageWorkingDistanceUnit", + "rdfs:comment": "TBD", + "rdfs:label": "Pinealgland", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Cm" - }, - { - "@id": "bts:Mm" - }, - { - "@id": "bts:Μm" - }, - { - "@id": "bts:Nm" - }, + "sms:displayName": "Pineal gland", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Pharynx;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Pharynx;NOS", + "rdfs:subClassOf": [ { - "@id": "bts:Γ…" + "@id": "bts:FileAnatomicSite" } ], - "sms:displayName": "Image Working Distance Unit", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pharynx; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageImmersionType", + "@id": "bts:Peritoneum;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Immersion medium", - "rdfs:label": "ImageImmersionType", + "rdfs:comment": "TBD", + "rdfs:label": "Peritoneum;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Air" - }, - { - "@id": "bts:Oil" - }, - { - "@id": "bts:Water" - }, - { - "@id": "bts:Other" - }, - { - "@id": "bts:Multi" - }, + "sms:displayName": "Peritoneum; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Boneoflimb;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Boneoflimb;NOS", + "rdfs:subClassOf": [ { - "@id": "bts:Glycerol" + "@id": "bts:FileAnatomicSite" } ], - "sms:displayName": "Image Immersion Type", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Bone of limb; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePyramidal", + "@id": "bts:Ventricle;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain pyramid of images", - "rdfs:label": "ImagePyramidal", + "rdfs:comment": "TBD", + "rdfs:label": "Ventricle;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:True" - }, + "sms:displayName": "Ventricle; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Specifiedpartsofperitoneum", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Specifiedpartsofperitoneum", + "rdfs:subClassOf": [ { - "@id": "bts:False" + "@id": "bts:FileAnatomicSite" } ], - "sms:displayName": "Image Pyramidal", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Specified parts of peritoneum", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageZstack", + "@id": "bts:Ventralsurfaceoftongue;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a Z-stack of images", - "rdfs:label": "ImageZstack", + "rdfs:comment": "TBD", + "rdfs:label": "Ventralsurfaceoftongue;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Z stack", + "sms:displayName": "Ventral surface of tongue; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageTimeseries", + "@id": "bts:Overlappinglesionofnasopharynx", "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a time-series of images", - "rdfs:label": "ImageTimeseries", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofnasopharynx", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Timeseries", + "sms:displayName": "Overlapping lesion of nasopharynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageFOVIndex", + "@id": "bts:Overlappinglesionofmalegenitalorgans", "@type": "rdfs:Class", - "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", - "rdfs:label": "ImageFOVIndex", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofmalegenitalorgans", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Index", + "sms:displayName": "Overlapping lesion of male genital organs", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageFOVSizeX", + "@id": "bts:Overlappinglesionofmajorsalivaryglands", "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension. Floating point", - "rdfs:label": "ImageFOVSizeX", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofmajorsalivaryglands", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size X", + "sms:displayName": "Overlapping lesion of major salivary glands", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageFOVSizeXUnit", + "@id": "bts:Overlappinglesionoflung", "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageFOVSizeXUnit", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionoflung", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size X Unit", + "sms:displayName": "Overlapping lesion of lung", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageFOVSizeY", + "@id": "bts:Overlappinglesionoflip;oralcavityandpharynx", "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension. Floating point value", - "rdfs:label": "ImageFOVSizeY", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionoflip;oralcavityandpharynx", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size Y", + "sms:displayName": "Overlapping lesion of lip; oral cavity and pharynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageFOVSizeYUnit", + "@id": "bts:Overlappinglesionoflip", "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageFOVSizeYUnit", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionoflip", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image FOV Size Y Unit", + "sms:displayName": "Overlapping lesion of lip", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageFrameAveraging", + "@id": "bts:Overlappinglesionoflarynx", "@type": "rdfs:Class", - "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", - "rdfs:label": "ImageFrameAveraging", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionoflarynx", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Frame Averaging", + "sms:displayName": "Overlapping lesion of larynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageIdentifier", + "@id": "bts:Overlappinglesionofill-definedsites", "@type": "rdfs:Class", - "rdfs:comment": "Unique internal image identifier. eg \"Image:0\". (To be extracted from OME-XML)", - "rdfs:label": "ImageIdentifier", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofill-definedsites", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Identifier", + "sms:displayName": "Overlapping lesion of ill-defined sites", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageDimensionOrder", + "@id": "bts:Overlappinglesionofhypopharynx", "@type": "rdfs:Class", - "rdfs:comment": "The order in which the individual planes of data are interleaved.", - "rdfs:label": "ImageDimensionOrder", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofhypopharynx", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Dimension Order", + "sms:displayName": "Overlapping lesion of hypopharynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePhysicalSizeX", + "@id": "bts:Overlappinglesionoffloorofmouth", "@type": "rdfs:Class", - "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeX", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionoffloorofmouth", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size X", + "sms:displayName": "Overlapping lesion of floor of mouth", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePhysicalSizeXUnit", + "@id": "bts:Overlappinglesionoffemalegenitalorgans", "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeXUnit", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionoffemalegenitalorgans", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size X Unit", + "sms:displayName": "Overlapping lesion of female genital organs", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePhysicalSizeY", + "@id": "bts:Overlappinglesionofesophagus", "@type": "rdfs:Class", - "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeY", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofesophagus", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Y", + "sms:displayName": "Overlapping lesion of esophagus", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePhysicalSizeYUnit", + "@id": "bts:Overlappinglesionofendocrineglandsandrelatedstructures", "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeYUnit", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofendocrineglandsandrelatedstructures", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Y Unit", + "sms:displayName": "Overlapping lesion of endocrine glands and related structures", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePhysicalSizeZ", + "@id": "bts:Overlappinglesionofdigestivesystem", "@type": "rdfs:Class", - "rdfs:comment": "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeZ", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofdigestivesystem", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Z", + "sms:displayName": "Overlapping lesion of digestive system", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePhysicalSizeZUnit", + "@id": "bts:Softpalate;NOS", "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeZUnit", + "rdfs:comment": "TBD", + "rdfs:label": "Softpalate;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Physical Size Z Unit", + "sms:displayName": "Soft palate; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePixelsBigEndian", + "@id": "bts:Smallintestine;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Boolean (True/False)", - "rdfs:label": "ImagePixelsBigEndian", + "rdfs:comment": "TBD", + "rdfs:label": "Smallintestine;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:True" - }, + "sms:displayName": "Small intestine; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skin;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skin;NOS", + "rdfs:subClassOf": [ { - "@id": "bts:False" + "@id": "bts:FileAnatomicSite" } ], - "sms:displayName": "Image Pixels BigEndian", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePlaneCount", + "@id": "bts:Skinofupperlimbandshoulder", "@type": "rdfs:Class", - "rdfs:comment": "Number of Z-planes (not to be confused with downsampled \"pyramid\"). Integer >=1", - "rdfs:label": "ImagePlaneCount", + "rdfs:comment": "TBD", + "rdfs:label": "Skinofupperlimbandshoulder", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Plane Count", + "sms:displayName": "Skin of upper limb and shoulder", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageChannelSize", + "@id": "bts:Skinoftrunk", "@type": "rdfs:Class", - "rdfs:comment": "Number of channels. Integer >= 1", - "rdfs:label": "ImageChannelSize", + "rdfs:comment": "TBD", + "rdfs:label": "Skinoftrunk", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Channel Size", + "sms:displayName": "Skin of trunk", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageNumberofTimepoints", + "@id": "bts:Skinofscalpandneck", "@type": "rdfs:Class", - "rdfs:comment": "Number of time points. Integer >= 1", - "rdfs:label": "ImageNumberofTimepoints", + "rdfs:comment": "TBD", + "rdfs:label": "Skinofscalpandneck", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Number of Timepoints", + "sms:displayName": "Skin of scalp and neck", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageXPixels", + "@id": "bts:Skinofotherandunspecifiedpartsofface", "@type": "rdfs:Class", - "rdfs:comment": "Size of image: X dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageXPixels", + "rdfs:comment": "TBD", + "rdfs:label": "Skinofotherandunspecifiedpartsofface", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image X Pixels", + "sms:displayName": "Skin of other and unspecified parts of face", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageYPixels", + "@id": "bts:Skinoflowerlimbandhip", "@type": "rdfs:Class", - "rdfs:comment": "Size of image: Y dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageYPixels", + "rdfs:comment": "TBD", + "rdfs:label": "Skinoflowerlimbandhip", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Y Pixels", + "sms:displayName": "Skin of lower limb and hip", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImageZPixels", + "@id": "bts:Skinoflip;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Size of image: Z dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageZPixels", + "rdfs:comment": "TBD", + "rdfs:label": "Skinoflip;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Z Pixels", + "sms:displayName": "Skin of lip; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagePixelType", + "@id": "bts:Sigmoidcolon", "@type": "rdfs:Class", - "rdfs:comment": "Data type for each pixel value. E.g. \"uint16\"", - "rdfs:label": "ImagePixelType", + "rdfs:comment": "TBD", + "rdfs:label": "Sigmoidcolon", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Pixel Type", + "sms:displayName": "Sigmoid colon", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cm", + "@id": "bts:Scrotum;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cm", + "rdfs:label": "Scrotum;NOS", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "cm", + "sms:displayName": "Scrotum; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Mm", + "@id": "bts:Roundligament", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Mm", + "rdfs:label": "Roundligament", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "mm", + "sms:displayName": "Round ligament", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Μm", + "@id": "bts:Retromolararea", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Μm", + "rdfs:label": "Retromolararea", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Β΅m", + "sms:displayName": "Retromolar area", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Nm", + "@id": "bts:Sublingualgland", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Nm", + "rdfs:label": "Sublingualgland", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "nm", + "sms:displayName": "Sublingual gland", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Γ…", + "@id": "bts:Stomach;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Γ…", + "rdfs:label": "Stomach;NOS", "rdfs:subClassOf": [ { - "@id": "bts:ImageWorkingDistanceUnit" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Γ…", + "sms:displayName": "Stomach; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Air", + "@id": "bts:Splenicflexureofcolon", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Air", + "rdfs:label": "Splenicflexureofcolon", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Air", + "sms:displayName": "Splenic flexure of colon", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Oil", + "@id": "bts:Spinalmeninges", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Oil", + "rdfs:label": "Spinalmeninges", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Oil", + "sms:displayName": "Spinal meninges", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Water", + "@id": "bts:Spinalcord", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Water", + "rdfs:label": "Spinalcord", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Water", + "sms:displayName": "Spinal cord", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Multi", + "@id": "bts:Sphenoidsinus", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Multi", + "rdfs:label": "Sphenoidsinus", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Multi", + "sms:displayName": "Sphenoid sinus", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Glycerol", + "@id": "bts:Spermaticcord", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Glycerol", + "rdfs:label": "Spermaticcord", "rdfs:subClassOf": [ { - "@id": "bts:ImageImmersionType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Glycerol", + "sms:displayName": "Spermatic cord", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:True", + "@id": "bts:Shortbonesoflowerlimbandassociatedjoints", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "True", + "rdfs:label": "Shortbonesoflowerlimbandassociatedjoints", "rdfs:subClassOf": [ { - "@id": "bts:ImagePyramidal" - }, - { - "@id": "bts:ImagePixelsBigEndian" - }, - { - "@id": "bts:ToolPackageDependenciesPresent" - }, - { - "@id": "bts:VisiumImageRe-orientation" - }, - { - "@id": "bts:VisiumAppliedHardTrimming" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "True", + "sms:displayName": "Short bones of lower limb and associated joints", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:False", + "@id": "bts:Waldeyerring", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "False", + "rdfs:label": "Waldeyerring", "rdfs:subClassOf": [ { - "@id": "bts:ImagePyramidal" - }, - { - "@id": "bts:ImagePixelsBigEndian" - }, - { - "@id": "bts:ToolPackageDependenciesPresent" - }, - { - "@id": "bts:VisiumImageRe-orientation" - }, - { - "@id": "bts:VisiumAppliedHardTrimming" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "False", + "sms:displayName": "Waldeyer ring", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel3Image", + "@id": "bts:Vulva;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Quality controlled or co-registered image data", - "rdfs:label": "ImagingLevel3Image", + "rdfs:comment": "TBD", + "rdfs:label": "Vulva;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Level 3 Image", + "sms:displayName": "Vulva; NOS", "sms:required": "sms:false", - "sms:requiresComponent": [ + "sms:validationRules": [] + }, + { + "@id": "bts:Vestibuleofmouth", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Vestibuleofmouth", + "rdfs:subClassOf": [ { - "@id": "bts:FileView" + "@id": "bts:FileAnatomicSite" } ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:ImagingLevel3ImageId" - }, - { - "@id": "bts:Filename" - }, - { - "@id": "bts:ImagingChannelKey" - }, - { - "@id": "bts:ImagingLevel2Key" - }, - { - "@id": "bts:ImageAssayType" - }, - { - "@id": "bts:ImageProtocolLink" - }, - { - "@id": "bts:ImagePlatformModel" - }, - { - "@id": "bts:ImagePlatformManufacturer" - }, - { - "@id": "bts:ImageSoftware" - }, - { - "@id": "bts:ImageObjective" - }, - { - "@id": "bts:ImageNominalMagnification" - }, - { - "@id": "bts:ImageLenseAperture" - }, - { - "@id": "bts:ImageWorkingDistance" - }, - { - "@id": "bts:ImageImmersionType" - }, - { - "@id": "bts:ImagePyramidal" - }, - { - "@id": "bts:ImageZstack" - }, - { - "@id": "bts:ImageTimeseries" - }, - { - "@id": "bts:ImageFOVIndex" - }, - { - "@id": "bts:ImageFOVSizeX" - }, - { - "@id": "bts:ImageFOVSizeY" - }, - { - "@id": "bts:ImageFOVSizeYUnit" - }, + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Vestibule of mouth", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Vertebralcolumn", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Vertebralcolumn", + "rdfs:subClassOf": [ { - "@id": "bts:ImageFrameAveraging" + "@id": "bts:FileAnatomicSite" } ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Vertebral column", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel3ImageId", + "@id": "bts:Vagina;NOS", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel3ImageId", + "rdfs:comment": "TBD", + "rdfs:label": "Vagina;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel3Image_id", - "sms:required": "sms:true", + "sms:displayName": "Vagina; NOS", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel2Key", + "@id": "bts:Uterus;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel2Key", + "rdfs:comment": "TBD", + "rdfs:label": "Uterus;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Imaging" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel2 Key", + "sms:displayName": "Uterus; NOS", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel2.ImagingLevel2_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel3Segments", + "@id": "bts:Uterineadnexa", "@type": "rdfs:Class", - "rdfs:comment": "Image segmentation mask information", - "rdfs:label": "ImagingLevel3Segments", + "rdfs:comment": "TBD", + "rdfs:label": "Uterineadnexa", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Level 3 Segments", + "sms:displayName": "Uterine adnexa", "sms:required": "sms:false", - "sms:requiresComponent": [ + "sms:validationRules": [] + }, + { + "@id": "bts:Urinarysystem;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Urinarysystem;NOS", + "rdfs:subClassOf": [ { - "@id": "bts:FileView" + "@id": "bts:FileAnatomicSite" } ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:ImagingLevel3SegmentsId" - }, - { - "@id": "bts:Filename" - }, - { - "@id": "bts:ImagingLevel2Key" - }, - { - "@id": "bts:ImagingLevel3ImageKey" - }, - { - "@id": "bts:ImageSegmentationDataType" - }, - { - "@id": "bts:ImageParameterfile" - }, - { - "@id": "bts:SoftwareandVersion" - }, - { - "@id": "bts:ImageObjectClass" - }, - { - "@id": "bts:ImageObjectClassDescription" - }, + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Urinary system; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Uretericorifice", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Uretericorifice", + "rdfs:subClassOf": [ { - "@id": "bts:ImageNumberofObjects" + "@id": "bts:FileAnatomicSite" } ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Ureteric orifice", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel3SegmentsId", + "@id": "bts:Upper-outerquadrantofbreast", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel3SegmentsId", + "rdfs:comment": "TBD", + "rdfs:label": "Upper-outerquadrantofbreast", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel3Segments_id", - "sms:required": "sms:true", + "sms:displayName": "Upper-outer quadrant of breast", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel3ImageKey", + "@id": "bts:Upper-innerquadrantofbreast", "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel3Image_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel3ImageKey", + "rdfs:comment": "TBD", + "rdfs:label": "Upper-innerquadrantofbreast", "rdfs:subClassOf": [ { - "@id": "bts:Imaging" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel3Image Key", + "sms:displayName": "Upper-inner quadrant of breast", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel3Image.ImagingLevel3Image_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImageSegmentationDataType", + "@id": "bts:Upperthirdofesophagus", "@type": "rdfs:Class", - "rdfs:comment": "Specifies how the segmentation is stored", - "rdfs:label": "ImageSegmentationDataType", + "rdfs:comment": "TBD", + "rdfs:label": "Upperthirdofesophagus", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Mask" - }, - { - "@id": "bts:Outline" - }, - { - "@id": "bts:Polygon" - }, - { - "@id": "bts:ProbabilityMap" - }, + "sms:displayName": "Upper third of esophagus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Shortbonesofupperlimbandassociatedjoints", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Shortbonesofupperlimbandassociatedjoints", + "rdfs:subClassOf": [ { - "@id": "bts:Point" + "@id": "bts:FileAnatomicSite" } ], - "sms:displayName": "Image Segmentation Data Type", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Short bones of upper limb and associated joints", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ImageParameterfile", + "@id": "bts:Rib;sternum;clavicleandassociatedjoints", "@type": "rdfs:Class", - "rdfs:comment": "Path in Synapse to a text file listing algorithm version numbers and relevant parameters needed to reproduce the analysis", - "rdfs:label": "ImageParameterfile", + "rdfs:comment": "TBD", + "rdfs:label": "Rib;sternum;clavicleandassociatedjoints", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Parameter file", + "sms:displayName": "Rib; sternum; clavicle and associated joints", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SoftwareandVersion", + "@id": "bts:Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder", "@type": "rdfs:Class", - "rdfs:comment": "Name of software used to generate the information contained in the file. String", - "rdfs:label": "SoftwareandVersion", + "rdfs:comment": "TBD", + "rdfs:label": "Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder", "rdfs:subClassOf": [ { - "@id": "bts:Shared" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Software and Version", + "sms:displayName": "Peripheral nerves and autonomic nervous system of upper limb and shoulder", "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImageObjectClass", + "@id": "bts:Peripheralnervesandautonomicnervoussystemoftrunk;NOS", "@type": "rdfs:Class", - "rdfs:comment": "Defines the structure that the mask delineates", - "rdfs:label": "ImageObjectClass", + "rdfs:comment": "TBD", + "rdfs:label": "Peripheralnervesandautonomicnervoussystemoftrunk;NOS", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Nucleus" - }, - { - "@id": "bts:Cytoplasm" - }, - { - "@id": "bts:PlasmaMembrane" - }, - { - "@id": "bts:WholeCell" - }, + "sms:displayName": "Peripheral nerves and autonomic nervous system of trunk; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Peripheralnervesandautonomicnervoussystemofthorax", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Peripheralnervesandautonomicnervoussystemofthorax", + "rdfs:subClassOf": [ { - "@id": "bts:Spot" - }, + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Peripheral nerves and autonomic nervous system of thorax", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Peripheralnervesandautonomicnervoussystemofpelvis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Peripheralnervesandautonomicnervoussystemofpelvis", + "rdfs:subClassOf": [ { - "@id": "bts:Other" + "@id": "bts:FileAnatomicSite" } ], - "sms:displayName": "Image Object Class", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Peripheral nerves and autonomic nervous system of pelvis", "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImageObjectClassDescription", + "@id": "bts:Peripheralnervesandautonomicnervoussystemoflowerlimbandhip", "@type": "rdfs:Class", - "rdfs:comment": "If Imaging Object Class is \"Other\", please use this field to provide a text description of the imaging object class associated with the segmentation data", - "rdfs:label": "ImageObjectClassDescription", + "rdfs:comment": "TBD", + "rdfs:label": "Peripheralnervesandautonomicnervoussystemoflowerlimbandhip", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Object Class Description", + "sms:displayName": "Peripheral nerves and autonomic nervous system of lower limb and hip", "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImageNumberofObjects", + "@id": "bts:Peripheralnervesandautonomicnervoussystemofhead;face;andneck", "@type": "rdfs:Class", - "rdfs:comment": "The number of objects (eg cells) described", - "rdfs:label": "ImageNumberofObjects", + "rdfs:comment": "TBD", + "rdfs:label": "Peripheralnervesandautonomicnervoussystemofhead;face;andneck", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Number of Objects", + "sms:displayName": "Peripheral nerves and autonomic nervous system of head; face; and neck", "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] + "sms:validationRules": [] }, { - "@id": "bts:Mask", + "@id": "bts:Peripheralnervesandautonomicnervoussystemofabdomen", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Mask", + "rdfs:label": "Peripheralnervesandautonomicnervoussystemofabdomen", "rdfs:subClassOf": [ { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Mask", + "sms:displayName": "Peripheral nerves and autonomic nervous system of abdomen", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Outline", + "@id": "bts:Reticuloendothelialsystem;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Outline", + "rdfs:label": "Reticuloendothelialsystem;NOS", "rdfs:subClassOf": [ { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Outline", + "sms:displayName": "Reticuloendothelial system; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Polygon", + "@id": "bts:Renalpelvis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Polygon", + "rdfs:label": "Renalpelvis", "rdfs:subClassOf": [ { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Polygon", + "sms:displayName": "Renal pelvis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ProbabilityMap", + "@id": "bts:Rectum;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ProbabilityMap", + "rdfs:label": "Rectum;NOS", "rdfs:subClassOf": [ { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Probability Map", + "sms:displayName": "Rectum; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Point", + "@id": "bts:Rectosigmoidjunction", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Point", + "rdfs:label": "Rectosigmoidjunction", "rdfs:subClassOf": [ { - "@id": "bts:ImageSegmentationDataType" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Point", + "sms:displayName": "Rectosigmoid junction", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Nucleus", + "@id": "bts:Pyriformsinus", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Nucleus", + "rdfs:label": "Pyriformsinus", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Nucleus", + "sms:displayName": "Pyriform sinus", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Cytoplasm", + "@id": "bts:Prostategland", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Cytoplasm", + "rdfs:label": "Prostategland", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cytoplasm", + "sms:displayName": "Prostate gland", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PlasmaMembrane", + "@id": "bts:Prepuce", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PlasmaMembrane", + "rdfs:label": "Prepuce", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Plasma Membrane", + "sms:displayName": "Prepuce", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeCell", + "@id": "bts:Posteriorwalloforopharynx", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeCell", + "rdfs:label": "Posteriorwalloforopharynx", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Cell", + "sms:displayName": "Posterior wall of oropharynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Spot", + "@id": "bts:Posteriorwallofnasopharynx", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Spot", + "rdfs:label": "Posteriorwallofnasopharynx", "rdfs:subClassOf": [ { - "@id": "bts:ImageObjectClass" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Spot", + "sms:displayName": "Posterior wall of nasopharynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel4", + "@id": "bts:Overlappinglesionofcorpusuteri", "@type": "rdfs:Class", - "rdfs:comment": "Derived imaging data or object by feature array", - "rdfs:label": "ImagingLevel4", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofcorpusuteri", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Imaging Level 4", + "sms:displayName": "Overlapping lesion of corpus uteri", "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:FileView" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:ImagingLevel4Id" - }, - { - "@id": "bts:Filename" - }, - { - "@id": "bts:ImagingLevel2Key" - }, - { - "@id": "bts:ImagingLevel3ImageKey" - }, - { - "@id": "bts:ImagingLevel3SegmentsKey" - }, - { - "@id": "bts:ImageParameterfile" - }, - { - "@id": "bts:ImageSoftware" - }, - { - "@id": "bts:ImageNumberofObjects" - }, - { - "@id": "bts:ImageNumberofFeatures" - }, - { - "@id": "bts:ImageObjectClass" - }, - { - "@id": "bts:ImageSummaryStatistic" - } - ], "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel4Id", + "@id": "bts:Overlappinglesionofconnective;subcutaneousandothersofttissues", "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", - "rdfs:label": "ImagingLevel4Id", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofconnective;subcutaneousandothersofttissues", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel4_id", - "sms:required": "sms:true", + "sms:displayName": "Overlapping lesion of connective; subcutaneous and other soft tissues", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ImagingLevel3SegmentsKey", + "@id": "bts:Overlappinglesionofcolon", "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel3Segments_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel3SegmentsKey", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofcolon", "rdfs:subClassOf": [ { - "@id": "bts:Imaging" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ImagingLevel3Segments Key", + "sms:displayName": "Overlapping lesion of colon", "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel3Segments.ImagingLevel3Segments_id Value" - ] + "sms:validationRules": [] }, { - "@id": "bts:ImageNumberofFeatures", + "@id": "bts:Overlappinglesionofcervixuteri", "@type": "rdfs:Class", - "rdfs:comment": "The number of features (eg channels) described", - "rdfs:label": "ImageNumberofFeatures", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofcervixuteri", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Image Number of Features", - "sms:required": "sms:true", - "sms:validationRules": [ - "num" - ] + "sms:displayName": "Overlapping lesion of cervix uteri", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:ImageSummaryStatistic", + "@id": "bts:Overlappinglesionofbreast", "@type": "rdfs:Class", - "rdfs:comment": "Function used to summarize object/feature intensity", - "rdfs:label": "ImageSummaryStatistic", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofbreast", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Mean" - }, - { - "@id": "bts:Median" - }, - { - "@id": "bts:NotSpecified" - } - ], - "sms:displayName": "Image Summary Statistic", - "sms:required": "sms:true", + "sms:displayName": "Overlapping lesion of breast", + "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Mean", + "@id": "bts:Overlappinglesionofbrain", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Mean", + "rdfs:label": "Overlappinglesionofbrain", "rdfs:subClassOf": [ { - "@id": "bts:ImageSummaryStatistic" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Mean", + "sms:displayName": "Overlapping lesion of brain", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Median", + "@id": "bts:Overlappinglesionofbladder", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Median", + "rdfs:label": "Overlappinglesionofbladder", "rdfs:subClassOf": [ { - "@id": "bts:ImageSummaryStatistic" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Median", + "sms:displayName": "Overlapping lesion of bladder", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NotSpecified", + "@id": "bts:Overlappinglesionofbiliarytract", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NotSpecified", + "rdfs:label": "Overlappinglesionofbiliarytract", "rdfs:subClassOf": [ { - "@id": "bts:ImageSummaryStatistic" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Not Specified", + "sms:displayName": "Overlapping lesion of biliary tract", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:IndividualId", + "@id": "bts:Overlappinglesionofaccessorysinuses", "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "IndividualId", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofaccessorysinuses", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Individual_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] + "sms:displayName": "Overlapping lesion of accessory sinuses", + "sms:required": "sms:false", + "sms:validationRules": [] }, { - "@id": "bts:IndividualdbGaPSubjectId", + "@id": "bts:Overlappinglesionofrectum;anusandanalcanal", "@type": "rdfs:Class", - "rdfs:comment": "The identifer assigned to the participant by dbGap", - "rdfs:label": "IndividualdbGaPSubjectId", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofrectum;anusandanalcanal", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Individual dbGaP Subject Id", + "sms:displayName": "Overlapping lesion of rectum; 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Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.", - "rdfs:label": "IndividualGender", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofheart;mediastinumandpleura", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Female" - }, - { - "@id": "bts:Male" - }, - { - "@id": "bts:Intersex" - }, - { - "@id": "bts:Unknown" - }, - { - "@id": "bts:Unspecified" - }, - { - "@id": "bts:NotReported" - } - ], - "sms:displayName": "Individual Gender", + "sms:displayName": "Overlapping lesion of heart; mediastinum and pleura", "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] + "sms:validationRules": [] }, { - "@id": "bts:IndividualAgeatDiagnosis", + "@id": "bts:Overlappinglesionofeyeandadnexa", "@type": "rdfs:Class", - "rdfs:comment": "Age at the time the individual was diagnosed, expressed in years.", - "rdfs:label": "IndividualAgeatDiagnosis", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofeyeandadnexa", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Individual Age at Diagnosis", + "sms:displayName": "Overlapping lesion of eye and adnexa", "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] + "sms:validationRules": [] }, { - "@id": "bts:IndividualDiseaseType", + "@id": "bts:Overlappinglesionofbrainandcentralnervoussystem", "@type": "rdfs:Class", - "rdfs:comment": "The type of tumor associated with the specimen. Multiple values permitted, comma separated.", - "rdfs:label": "IndividualDiseaseType", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofbrainandcentralnervoussystem", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:FileAnatomicSite" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:AcinarCellNeoplasms" - }, - { - "@id": "bts:AdenomasandAdenocarcinomas" - }, - { - "@id": "bts:AdnexalandSkinAppendageNeoplasms" - }, - { - "@id": "bts:BasalCellNeoplasms" - }, - { - "@id": "bts:BloodVesselTumors" - }, - { - "@id": "bts:ComplexMixedandStromalNeoplasms" - }, - { - "@id": "bts:Cystic;MucinousandSerousNeoplasms" - }, - { - "@id": "bts:DuctalandLobularNeoplasms" - }, - { - "@id": "bts:EpithelialNeoplasms;NOS" - }, - { - "@id": "bts:FibroepithelialNeoplasms" - }, - { - "@id": "bts:FibromatousNeoplasms" - }, - { - "@id": "bts:GermCellNeoplasms" - }, - { - "@id": "bts:GiantCellTumors" - }, - { - "@id": "bts:Gliomas" - 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}, - { - "@id": "bts:OxyphilicAdenocarcinoma" - }, - { - "@id": "bts:FavorPilocyticAstrocytoma;CNSWHOGrade1" - }, - { - "@id": "bts:PoorlyDifferentiated;IntermediateMitotic-KaryorrhecticIndex" - }, - { - "@id": "bts:ClearCellMeningioma" - }, - { - "@id": "bts:Medulloblastoma;ClassicHistologicType;CNSWHOGrade4" - }, - { - "@id": "bts:AppearancesConsistentWithAlveolarSoftPartSarcoma" - }, - { - "@id": "bts:DedifferentiatedLiposarcoma" - }, - { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" - }, - { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" - }, - { - "@id": "bts:TubularAdenocarcinoma" - }, - { - "@id": "bts:Rhabdomyosarcoma;MostLikelyAnEmbryonalCarcinoma" - }, - { - "@id": "bts:Adenocarcinoma;NOS" - }, - { - "@id": "bts:PleuropulmonaryBlastoma" - }, - { - "@id": "bts:BasaloidSquamousCellCarcinoma" - }, - { - "@id": "bts:Oligodendroglioma;Anaplastic;NOS" - }, - { - "@id": "bts:PilocyticAstrocytoma;WHOGrade1" - }, - { - "@id": "bts:NotApplicable" - }, - { - "@id": "bts:AbdominalFibromatosis" - }, - { - "@id": "bts:Hamartoma" - }, - { - "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" - }, - { - "@id": "bts:ChoroidPlexusPapilloma;NOS;ChoroidPlexusTumors" - }, - { - "@id": "bts:BurkittLymphoma;NOS" - }, - { - "@id": "bts:LymphoepithelialCarcinoma" - }, - { - "@id": "bts:Bronchiolo-AlveolarCarcinoma;Non-Mucinous" - }, - { - "@id": "bts:KidneyClearCellRenalCarcinoma" - }, - { - "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma" - }, - { - "@id": "bts:AdenocarcinomaInSituInAdenomatousPolyp" - }, - { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant" - }, - { - "@id": "bts:SmallBlueCellTumor.FavorMedulloblastoma" - }, - { - "@id": "bts:BLymphoblasticLeukemia/Lymphoma;NOS" - }, - { - "@id": "bts:EmbryonalTumorWithMulti-LayeredRosettes" - }, - { - "@id": "bts:ChronicEosinophilicLeukemia" - }, - { - "@id": "bts:MixedGlioma" - }, - { - "@id": "bts:BasalCellAdenocarcinoma" - }, - { - "@id": "bts:OlfactoryNeuroblastoma" - }, - { - "@id": "bts:TransitionalCellCarcinoma;NOS" - }, - { - "@id": "bts:ClearCellSarcoma;NOS" - }, - { - "@id": "bts:EmbryonalRhabdomyosarcoma;High-Grade" - }, - { - "@id": "bts:AngiocentricGlioma" - }, - { - "@id": "bts:DiffuseMidlineGlioma;H3K27Altered;WHOGrade4" - }, - { - "@id": "bts:Osteoblastoma;NOS" - }, - { - "@id": "bts:MalignantNeoplasmWithRhabdomyoblasticDifferentiation;HighGrade" - }, - { - "@id": "bts:MyxopapillaryEpendymoma(CNSWHOGradeII)" - }, - { - "@id": "bts:MelanomaInSitu" - }, - { - "@id": "bts:SecretoryCarcinoma" - }, - { - "@id": "bts:PilocyticAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" - }, + "sms:displayName": "Overlapping lesion of bones; joints and articular cartilage of limbs", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilage", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofbones;jointsandarticularcartilage", + "rdfs:subClassOf": [ { - 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"@id": "bts:Glioblastoma" - }, + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Posterior mediastinum", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Postcricoidregion", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Postcricoidregion", + "rdfs:subClassOf": [ { - "@id": "bts:AtypicalChoroidPlexusPapilloma;ChoroidPlexusTumors" - }, + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Postcricoid region", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Pleura;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Pleura;NOS", + "rdfs:subClassOf": [ { - "@id": "bts:Ganglioneuroma;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" - }, + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pleura; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFiles", + "@type": "rdfs:Class", + "rdfs:comment": "Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.", + "rdfs:label": "NanoStringGeoMxAuxiliaryFiles", + "rdfs:subClassOf": [ { - "@id": "bts:DesmoplasticMelanoma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoString GeoMx Auxiliary Files", + "sms:required": "sms:false", + "sms:requiresDependency": [ { - "@id": "bts:ChoroidPlexusCarcinoma" + "@id": "bts:Component" }, { - "@id": "bts:SoftTissueTumor;Benign" + "@id": "bts:NanoStringGeoMxAuxiliaryFilesId" }, { - "@id": "bts:Medulloblastoma;NOS" + "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile" }, { - "@id": "bts:Glioblastoma;NOS;Medulloblastoma;NOS" + "@id": "bts:SynapseIDofGeoMxDSPPKCFile" }, { - "@id": "bts:ResidualAstrocytoma" + "@id": "bts:SynapseIDofGeoMxLabWorksheetFile" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(V;11q23);MLLRearranged" - }, + "@id": "bts:SynapseIDofGeoMxDSPConfigFile" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesId", + "@type": "rdfs:Class", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxAuxiliaryFilesId", + "rdfs:subClassOf": [ { - "@id": "bts:ExtraAdrenalParaganglioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxAuxiliaryFiles_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile", + "@type": "rdfs:Class", + "rdfs:comment": "Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.", + "rdfs:label": "SynapseIDofGeoMxDSPROISegmentAnnotationFile", + "rdfs:subClassOf": [ { - "@id": "bts:MucoepidermoidCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Synapse ID of GeoMx DSP ROI Segment Annotation File", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] + }, + { + "@id": "bts:SynapseIDofGeoMxDSPPKCFile", + "@type": "rdfs:Class", + "rdfs:comment": "The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.", + "rdfs:label": "SynapseIDofGeoMxDSPPKCFile", + "rdfs:subClassOf": [ { - "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Synapse ID of GeoMx DSP PKC File", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] + }, + { + "@id": "bts:SynapseIDofGeoMxLabWorksheetFile", + "@type": "rdfs:Class", + "rdfs:comment": "Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.", + "rdfs:label": "SynapseIDofGeoMxLabWorksheetFile", + "rdfs:subClassOf": [ { - "@id": "bts:ChoroidPlexusPapilloma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Synapse ID of GeoMx Lab Worksheet File", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] + }, + { + "@id": "bts:SynapseIDofGeoMxDSPConfigFile", + "@type": "rdfs:Class", + "rdfs:comment": "Synapse ID of config.ini file generated by the GeoMx DSP workflow.", + "rdfs:label": "SynapseIDofGeoMxDSPConfigFile", + "rdfs:subClassOf": [ { - "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Synapse ID of GeoMx DSP Config File", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] + }, + { + "@id": "bts:NanoStringGeoMxDSPImaging", + "@type": "rdfs:Class", + "rdfs:comment": "Images acquired by the GeoMx instrument", + "rdfs:label": "NanoStringGeoMxDSPImaging", + "rdfs:subClassOf": [ { - "@id": "bts:B-LymphoblasticLeukemia/Lymphoma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoString GeoMx DSP Imaging", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:HodgkinLymphoma;NodularSclerosis;NOS" + "@id": "bts:FileView" }, { - "@id": "bts:Fibroma" - }, + "@id": "bts:NanoStringGeoMxAuxiliaryFiles" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Craniopharyngioma;NOS;AdamantinomatousCraniopharyngioma" + "@id": "bts:Component" }, { - "@id": "bts:T-Cell/HistiocyteRichLargeB-CellLymphoma" + "@id": "bts:NanoStringGeoMxDSPImagingId" }, { - "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade4" + "@id": "bts:Filename" }, { - "@id": "bts:AcuteErythroidLeukemia" + "@id": "bts:NanoStringGeoMxDSPLevel1Key" }, { - "@id": "bts:Glioma;HistologicallyLowGrade" + "@id": "bts:NanoStringGeoMxDSPLevel2Key" }, { - "@id": "bts:MucousAdenocarcinoma" + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" }, { - "@id": "bts:Glioma;Malignant;Ganglioglioma;GlioneuronalAndNeuronalTumors" + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" }, { - "@id": "bts:NodularMelanoma" + "@id": "bts:GeoMxImagingChannelNames" }, { - "@id": "bts:SynovialSarcoma;Biphasic" + "@id": "bts:GeoMxImagingAOICoordinates" }, { - "@id": "bts:Neoplasm;Metastatic" + "@id": "bts:ImagingChannelKey" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:ImageAssayType" }, { - "@id": "bts:Thymoma;NOS" + "@id": "bts:ImageProtocolLink" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;PosteriorFossaEpendymoma;GroupPFA" + "@id": "bts:ImagePlatformModel" }, { - "@id": "bts:Desmoplastic/NodularMedulloblastoma" + "@id": "bts:ImagePlatformManufacturer" }, { - "@id": "bts:PapillaryGlioneuronalTumor" + "@id": "bts:ImageSoftware" }, { - "@id": "bts:MixedPhenotypeAcuteLeukemia;T/Myeloid;NOS" + "@id": "bts:ImageObjective" }, { - "@id": "bts:Cholangiocarcinoma" + "@id": "bts:ImageNominalMagnification" }, { - "@id": "bts:Astroblastoma;MN1-Altered.HistologicallyHigh-Grade" + "@id": "bts:ImageLenseAperture" }, { - "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated;WithHeterologousElements" + "@id": "bts:ImageWorkingDistance" }, { - "@id": "bts:Glioma;Malignant;High-GradeGlioma;Infant-TypeHemisphericGlioma" + "@id": "bts:ImageWorkingDistanceUnit" }, { - "@id": "bts:JuvenileMyelomonocyticLeukemia;NOS" + "@id": "bts:ImageImmersionType" }, { - "@id": "bts:EmbryonalNeoplasmWithINI-1LossByImmunohistochemistry" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:MyeloidLeukemiaWithMyelodysplasia-RelatedChanges" + "@id": "bts:ImageZstack" }, { - "@id": "bts:PrimaryCutaneousFollicleCenterLymphoma" + "@id": "bts:ImageTimeseries" }, { - "@id": "bts:ChoroidPlexusCarcinoma;WHOGrade3" + "@id": "bts:ImageFOVIndex" }, { - "@id": "bts:InfiltratingDuctCarcinomaNOS" + "@id": "bts:ImageFOVSizeX" }, { - "@id": "bts:TLymphoblasticLeukemia/Lymphoma" + "@id": "bts:ImageFOVSizeXUnit" }, { - "@id": "bts:Glioma;Malignant;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:ImageFOVSizeY" }, { - "@id": "bts:MixedGermCellTumor;MyelodysplasticSyndromeWithExcessBlasts" + "@id": "bts:ImageFOVSizeYUnit" }, { - "@id": "bts:ClearCellAdenocarcinoma;NOS" + "@id": "bts:ImageFrameAveraging" }, { - "@id": "bts:CutaneousT-CellLymphoma;NOS" + "@id": "bts:ImageIdentifier" }, { - "@id": "bts:Germinoma" + "@id": "bts:ImageDimensionOrder" }, { - "@id": "bts:Neoplasm;Malignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:ImagePhysicalSizeX" }, { - "@id": "bts:MeningealMelanocytoma" + "@id": "bts:ImagePhysicalSizeXUnit" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:ImagePhysicalSizeY" }, { - "@id": "bts:AcutePromyelocyticLeukemia;T(15;17)(Q22;Q11-12)" + "@id": "bts:ImagePhysicalSizeYUnit" }, { - "@id": "bts:AlveolarSoftPartSarcoma" + "@id": "bts:ImagePhysicalSizeZ" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:ImagePhysicalSizeZUnit" }, { - "@id": "bts:MixedEpithelioidAndSpindleCellMelanoma" + "@id": "bts:ImagePixelsBigEndian" }, { - "@id": "bts:CNSEmbryonalTumor;NOS;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" + "@id": "bts:ImagePlaneCount" }, { - "@id": "bts:MalignantTumor;SpindleCellType" + "@id": "bts:ImageChannelSize" }, { - "@id": "bts:Glioma;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:ImageNumberofTimepoints" }, { - "@id": "bts:Glioma;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:ImageXPixels" }, { - "@id": "bts:EndometrioidCarcinoma;NOS" + "@id": "bts:ImageYPixels" }, { - "@id": "bts:LungSquamousCellCarcinoma;NOS" + "@id": "bts:ImageZPixels" }, { - "@id": "bts:PapillaryUrothelialCarcinoma;Non-Invasive" - }, + "@id": "bts:ImagePixelType" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:NanoStringGeoMxDSPImagingId", + "@type": "rdfs:Class", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxDSPImagingId", + "rdfs:subClassOf": [ { - "@id": "bts:Neuroblastoma;UndifferentiatedType" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPImaging_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:PeriostealOsteosarcoma" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPLevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPLevel1.NanoStringGeoMxDSPLevel1_id Value" + ] + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel2Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel2Key", + "rdfs:subClassOf": [ { - "@id": "bts:MixedPhenotypeAcuteLeukemia;B/Myeloid;NOS" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPLevel2 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPLevel2.NanoStringGeoMxDSPLevel2_id Value" + ] + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxAuxiliaryFilesKey", + "rdfs:subClassOf": [ { - "@id": "bts:InflammatoryCarcinoma" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxAuxiliaryFiles Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxAuxiliaryFiles.NanoStringGeoMxAuxiliaryFiles_id Value" + ] + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMXROISegmentAnnotationKey", + "rdfs:subClassOf": [ { - "@id": "bts:Glioblastoma;NOS" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMXROISegmentAnnotation Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMXROISegmentAnnotation.NanoStringGeoMXROISegmentAnnotation_id Value" + ] + }, + { + "@id": "bts:GeoMxImagingChannelNames", + "@type": "rdfs:Class", + "rdfs:comment": "Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.", + "rdfs:label": "GeoMxImagingChannelNames", + "rdfs:subClassOf": [ { - "@id": "bts:Carcinoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "GeoMx Imaging Channel Names", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:GeoMxImagingAOICoordinates", + "@type": "rdfs:Class", + "rdfs:comment": "Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.", + "rdfs:label": "GeoMxImagingAOICoordinates", + "rdfs:subClassOf": [ { - "@id": "bts:SquamousCellCarcinoma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "GeoMx Imaging AOI Coordinates", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:ImagingChannelKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingChannel_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingChannelKey", + "rdfs:subClassOf": [ { - "@id": "bts:HypocellularLowGradeLesion" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingChannel Key", + "sms:required": "sms:true", + "sms:validationRules": [ + "matchAtLeastOne ImagingChannel.ImagingChannel_id Value" + ] + }, + { + "@id": "bts:ImageAssayType", + "@type": "rdfs:Class", + "rdfs:comment": "Type of imaging assay", + "rdfs:label": "ImageAssayType", + "rdfs:subClassOf": [ { - "@id": "bts:GlioblastomaMultiforme" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Pancreas-UndifferentiatedCarcinoma" + "@id": "bts:CODEX" }, { - "@id": "bts:DifferentiatingNeuroblastoma" + "@id": "bts:CyCIF" }, { - "@id": "bts:MyxoidSpindleCellTumor" + "@id": "bts:ExSeq" }, { - "@id": "bts:MerkelCellTumor" + "@id": "bts:GeoMX-DSP" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS;CNSSarcoma;CNSSarcoma;NOSOrNEC" + "@id": "bts:H&E" }, { - "@id": "bts:Hemangioma;NOS" + "@id": "bts:IHC" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithAbnormalMarrowEosinophils" + "@id": "bts:IMC" }, { - "@id": "bts:WellDifferentiatedNeuroendocrinceTumor;Grade1" + "@id": "bts:MERFISH" }, { - "@id": "bts:Ganglioglioma;Anaplastic" + "@id": "bts:MIBI" }, { - "@id": "bts:EpendymomaWHOGrade2" + "@id": "bts:MIHC" }, { - "@id": "bts:SynovialSarcoma;NOS" + "@id": "bts:MxIF" }, { - "@id": "bts:ThymicCarcinoma;NOS" + "@id": "bts:NotApplicable" }, { - "@id": "bts:TumorCells;Malignant" + "@id": "bts:SABER" }, { - "@id": "bts:PilomyxoidAstrocytoma" - }, + "@id": "bts:T-CyCIF" + } + ], + "sms:displayName": "Image Assay Type", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageProtocolLink", + "@type": "rdfs:Class", + "rdfs:comment": "Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.", + "rdfs:label": "ImageProtocolLink", + "rdfs:subClassOf": [ { - "@id": "bts:PapillaryCarcinoma;ColumnarCell" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Protocol Link", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePlatformModel", + "@type": "rdfs:Class", + "rdfs:comment": "The specific model of the instrument used to carry out an imaging experiment.", + "rdfs:label": "ImagePlatformModel", + "rdfs:subClassOf": [ { - "@id": "bts:PlexiformFibrohistiocyticTumor" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Platform Model", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePlatformManufacturer", + "@type": "rdfs:Class", + "rdfs:comment": "Producer of the imaging equipment that was used to generate the digital image", + "rdfs:label": "ImagePlatformManufacturer", + "rdfs:subClassOf": [ { - "@id": "bts:Astrocytoma;NOS;AngiocentricGlioma;Low-GradeGlioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Platform Manufacturer", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageSoftware", + "@type": "rdfs:Class", + "rdfs:comment": "The name of the software package that was used to capture, generate, and process the image.", + "rdfs:label": "ImageSoftware", + "rdfs:subClassOf": [ { - "@id": "bts:Carcinoma;Undifferentiated;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Software", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageObjective", + "@type": "rdfs:Class", + "rdfs:comment": "Objective lens identifier", + "rdfs:label": "ImageObjective", + "rdfs:subClassOf": [ { - "@id": "bts:DermatofibrosarcomaProtuberans;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Objective", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageNominalMagnification", + "@type": "rdfs:Class", + "rdfs:comment": "The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units)", + "rdfs:label": "ImageNominalMagnification", + "rdfs:subClassOf": [ { - "@id": "bts:HighGradeGliomaWithNecrosis;WHOGrade4" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Nominal Magnification", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageLenseAperture", + "@type": "rdfs:Class", + "rdfs:comment": "The numerical aperture of the lens. Floating point value > 0.", + "rdfs:label": "ImageLenseAperture", + "rdfs:subClassOf": [ { - "@id": "bts:Infiltratingductularcarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Lense Aperture", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageWorkingDistance", + "@type": "rdfs:Class", + "rdfs:comment": "The working distance of the lens, expressed as a floating point number. Floating point > 0.", + "rdfs:label": "ImageWorkingDistance", + "rdfs:subClassOf": [ { - "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges;JuvenileMyelomonocyticLeukemia;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Working Distance", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageWorkingDistanceUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageWorkingDistanceUnit", + "rdfs:subClassOf": [ { - "@id": "bts:InfiltratingDuctAndMucinousCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:IntraductalPapillaryCarcinoma" + "@id": "bts:Cm" }, { - "@id": "bts:SerousSurfacePapillaryCarcinoma" + "@id": "bts:Mm" }, { - "@id": "bts:InvasiveCarcinoma" + "@id": "bts:Μm" }, { - "@id": "bts:HighGradeMalignantEpithelioidNeoplasm" + "@id": "bts:Nm" }, { - "@id": "bts:FavorPilocyticAstrocytomaWithIncreasedProliferationIndices" - }, + "@id": "bts:Γ…" + } + ], + "sms:displayName": "Image Working Distance Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageImmersionType", + "@type": "rdfs:Class", + "rdfs:comment": "Immersion medium", + "rdfs:label": "ImageImmersionType", + "rdfs:subClassOf": [ { - "@id": "bts:Medulloblastoma;ClassicMorphology;CNSWHOGrade4;NON-WNT/NON-SHH;Group4SubtypeByMethylation" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:CompositeHodgkinAndNon-HodgkinLymphoma" + "@id": "bts:Air" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT;NOSOrNEC" + "@id": "bts:Oil" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-TYR" + "@id": "bts:Water" }, { - "@id": "bts:PrimaryCutaneousCD30PositiveT-CellLymphoproliferativeDisorder" + "@id": "bts:Other" }, { - "@id": "bts:Hemangioendothelioma;NOS" + "@id": "bts:Multi" }, { - "@id": "bts:HypercellularLesionWithAtypia" - }, + "@id": "bts:Glycerol" + } + ], + "sms:displayName": "Image Immersion Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePyramidal", + "@type": "rdfs:Class", + "rdfs:comment": "Does data file contain pyramid of images", + "rdfs:label": "ImagePyramidal", + "rdfs:subClassOf": [ { - "@id": "bts:EmbryonalCarcinoma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Subependymoma;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:True" }, { - "@id": "bts:GermCellTumor;Nonseminomatous" - }, + "@id": "bts:False" + } + ], + "sms:displayName": "Image Pyramidal", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageZstack", + "@type": "rdfs:Class", + "rdfs:comment": "Does data file contain a Z-stack of images", + "rdfs:label": "ImageZstack", + "rdfs:subClassOf": [ { - "@id": "bts:AdrenalCorticalCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Z stack", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageTimeseries", + "@type": "rdfs:Class", + "rdfs:comment": "Does data file contain a time-series of images", + "rdfs:label": "ImageTimeseries", + "rdfs:subClassOf": [ { - "@id": "bts:OlfactoryNeurocytoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Timeseries", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVIndex", + "@type": "rdfs:Class", + "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", + "rdfs:label": "ImageFOVIndex", + "rdfs:subClassOf": [ { - "@id": "bts:LargeCellMedulloblastoma;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Index", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeX", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view X dimension. Floating point", + "rdfs:label": "ImageFOVSizeX", + "rdfs:subClassOf": [ { - "@id": "bts:NuclearProteinInTestis(NUT)-AssociatedCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size X", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeXUnit", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageFOVSizeXUnit", + "rdfs:subClassOf": [ { - "@id": "bts:Epithelial-MyoepithelialCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size X Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeY", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view Y dimension. Floating point value", + "rdfs:label": "ImageFOVSizeY", + "rdfs:subClassOf": [ { - "@id": "bts:SquamousCellCarcinoma;Keratinizing;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size Y", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFOVSizeYUnit", + "@type": "rdfs:Class", + "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageFOVSizeYUnit", + "rdfs:subClassOf": [ { - "@id": "bts:Ganglioneuroma;Other;Schwannoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image FOV Size Y Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageFrameAveraging", + "@type": "rdfs:Class", + "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", + "rdfs:label": "ImageFrameAveraging", + "rdfs:subClassOf": [ { - "@id": "bts:GlomusTumor;Malignant" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Frame Averaging", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageIdentifier", + "@type": "rdfs:Class", + "rdfs:comment": "Unique internal image identifier. eg \"Image:0\". (To be extracted from OME-XML)", + "rdfs:label": "ImageIdentifier", + "rdfs:subClassOf": [ { - "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Identifier", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageDimensionOrder", + "@type": "rdfs:Class", + "rdfs:comment": "The order in which the individual planes of data are interleaved.", + "rdfs:label": "ImageDimensionOrder", + "rdfs:subClassOf": [ { - "@id": "bts:MalignantLymphoma;Non-Hodgkin;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Dimension Order", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeX", + "@type": "rdfs:Class", + "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeX", + "rdfs:subClassOf": [ { - "@id": "bts:EmbryonalRhabdomyosarcoma;NOS;CNSEmbryonalTumor;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size X", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeXUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeXUnit", + "rdfs:subClassOf": [ { - "@id": "bts:TenosynovialGiantCellTumor;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size X Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeY", + "@type": "rdfs:Class", + "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeY", + "rdfs:subClassOf": [ { - "@id": "bts:HistologicallyLow-GradeGlioma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Y", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeYUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeYUnit", + "rdfs:subClassOf": [ { - "@id": "bts:Chordoma;NOS;Ganglioneuroblastoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Y Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeZ", + "@type": "rdfs:Class", + "rdfs:comment": "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeZ", + "rdfs:subClassOf": [ { - "@id": "bts:Ependymoma;NOS" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Z", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePhysicalSizeZUnit", + "@type": "rdfs:Class", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeZUnit", + "rdfs:subClassOf": [ { - "@id": "bts:InvasiveMammaryCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Physical Size Z Unit", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePixelsBigEndian", + "@type": "rdfs:Class", + "rdfs:comment": "Boolean (True/False)", + "rdfs:label": "ImagePixelsBigEndian", + "rdfs:subClassOf": [ { - "@id": "bts:RhabdoidTumor;Malignant" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Medulloblastoma;ClassicHistology" + "@id": "bts:True" }, { - "@id": "bts:AdenocarcinomaInVillousAdenoma" - }, + "@id": "bts:False" + } + ], + "sms:displayName": "Image Pixels BigEndian", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagePlaneCount", + "@type": "rdfs:Class", + "rdfs:comment": "Number of Z-planes (not to be confused with downsampled \"pyramid\"). Integer >=1", + "rdfs:label": "ImagePlaneCount", + "rdfs:subClassOf": [ { - "@id": "bts:UndifferentiatedSarcoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Plane Count", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageChannelSize", + "@type": "rdfs:Class", + "rdfs:comment": "Number of channels. Integer >= 1", + "rdfs:label": "ImageChannelSize", + "rdfs:subClassOf": [ { - "@id": "bts:PapillaryThyroidCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Channel Size", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageNumberofTimepoints", + "@type": "rdfs:Class", + "rdfs:comment": "Number of time points. 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- "@id": "bts:ExternalUpperLip" + "@id": "bts:Ti" }, { - "@id": "bts:ExtrahepaticBileDuct" + "@id": "bts:V" }, { - "@id": "bts:Eye" + "@id": "bts:Cr" }, { - "@id": "bts:Eyebrow" + "@id": "bts:Mn" }, { - "@id": "bts:Eyelid" + "@id": "bts:Fe" }, { - "@id": "bts:FacialBone" + "@id": "bts:Co" }, { - "@id": "bts:FacialNerve" + "@id": "bts:Ni" }, { - "@id": "bts:FallopianTube" + "@id": "bts:Cu" }, { - "@id": "bts:FalseVocalCord" + "@id": "bts:Zn" }, { - "@id": "bts:FalxCerebelli" + "@id": "bts:Ga" }, { - "@id": "bts:FalxCerebri" + "@id": "bts:Ge" }, { - "@id": "bts:Fascia" + "@id": "bts:As" }, { - "@id": "bts:FemaleGenitalia" + "@id": "bts:Se" }, { - "@id": "bts:FemoralArtery" + "@id": "bts:Br" }, { - "@id": "bts:FemoralLymphNode" + "@id": "bts:Kr" }, { - "@id": "bts:FemoralNerve" + "@id": "bts:Rb" }, { - "@id": "bts:Femur" + "@id": "bts:Sr" }, { - "@id": "bts:FibrousTissue" + "@id": "bts:Y" }, { - "@id": "bts:Fibula" + "@id": "bts:Zr" }, { - "@id": "bts:Finger" + "@id": "bts:Nb" }, { - 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"sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:H&E", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "H&E", + "rdfs:subClassOf": [ { - "@id": "bts:Lip" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "H&E", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IHC", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "IHC", + "rdfs:subClassOf": [ { - "@id": "bts:Liver" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "IHC", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IMC", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "IMC", + "rdfs:subClassOf": [ { - "@id": "bts:LobuleoftheAuricle" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "IMC", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MERFISH", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MERFISH", + "rdfs:subClassOf": [ { - "@id": "bts:LowerExtremity" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "MERFISH", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MIBI", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MIBI", + "rdfs:subClassOf": [ { - "@id": "bts:LowerGingiva" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "MIBI", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MIHC", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MIHC", + "rdfs:subClassOf": [ { - "@id": "bts:LowerLobeoftheLung" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "mIHC", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MxIF", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MxIF", + "rdfs:subClassOf": [ { - "@id": "bts:LowerThirdoftheEsophagus" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "MxIF", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SABER", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SABER", + "rdfs:subClassOf": [ { - "@id": "bts:Lower-InnerQuadrantoftheBreast" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SABER", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T-CyCIF", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T-CyCIF", + "rdfs:subClassOf": [ { - "@id": "bts:Lower-OuterQuadrantoftheBreast" - }, + "@id": "bts:ImageAssayType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "t-CyCIF", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel2", + "@type": "rdfs:Class", + "rdfs:comment": "Raw and pre-processed image data", + "rdfs:label": "ImagingLevel2", + "rdfs:subClassOf": [ { - "@id": "bts:LumbarNerve" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Imaging Level 2", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:LumbosacralPlexus" - }, + "@id": "bts:FileView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Lung" + "@id": "bts:Component" }, { - "@id": "bts:LymphNode" + "@id": "bts:ImagingLevel2Id" }, { - "@id": "bts:LymphNodeofInguinalRegionorLeg" + "@id": "bts:Filename" }, { - "@id": "bts:Lymphatic" + "@id": "bts:ImagingLevel1Key" }, { - "@id": "bts:MainBronchus" + "@id": "bts:ImagingChannelKey" }, { - "@id": "bts:MaleGenitalia" + "@id": "bts:ImageAssayType" }, { - "@id": "bts:MalePrepuce" + "@id": "bts:ImageProtocolLink" }, { - "@id": "bts:MammaryGland" + "@id": "bts:ImagePlatformModel" }, { - "@id": "bts:Mandible" + "@id": "bts:ImagePlatformManufacturer" }, { - "@id": "bts:MasseterMuscle" + "@id": "bts:ImageSoftware" }, { - "@id": "bts:Maxilla" + "@id": "bts:ImageObjective" }, { - "@id": "bts:MaxillarySinus" + "@id": "bts:ImageNominalMagnification" }, { - "@id": "bts:MeckelDiverticulum" + "@id": "bts:ImageLenseAperture" }, { - "@id": "bts:MedianNerve" + "@id": "bts:ImageWorkingDistance" }, { - "@id": "bts:MediastinalLymphNode" + "@id": "bts:ImageWorkingDistanceUnit" }, { - "@id": "bts:Mediastinum" + "@id": "bts:ImageImmersionType" }, { - "@id": "bts:MedullaOblongata" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:MeibomianGland" + "@id": "bts:ImageZstack" }, { - "@id": "bts:Meninges" + "@id": "bts:ImageTimeseries" }, { - "@id": "bts:MeniscusLateralis" + "@id": "bts:ImageFOVIndex" }, { - "@id": "bts:MeniscusMedialis" + "@id": "bts:ImageFOVSizeX" }, { - "@id": "bts:Mentum" + "@id": "bts:ImageFOVSizeXUnit" }, { - "@id": "bts:Mesencephalon" + "@id": "bts:ImageFOVSizeY" }, { - "@id": "bts:MesentericArtery" + "@id": "bts:ImageFOVSizeYUnit" }, { - "@id": "bts:MesentericLymphNode" + "@id": "bts:ImageFrameAveraging" }, { - "@id": "bts:Mesentery" + "@id": "bts:ImageIdentifier" }, { - "@id": "bts:MesonephricDuct" + "@id": "bts:ImageDimensionOrder" }, { - "@id": "bts:Mesonephros" + "@id": "bts:ImagePhysicalSizeX" }, { - "@id": "bts:Mesovarium" + "@id": "bts:ImagePhysicalSizeXUnit" }, { - "@id": "bts:MetacarpalBone" + "@id": "bts:ImagePhysicalSizeY" }, { - "@id": "bts:MetatarsalBone" + "@id": "bts:ImagePhysicalSizeYUnit" }, { - "@id": "bts:MiddleCranialFossa" + "@id": "bts:ImagePhysicalSizeZ" }, { - "@id": "bts:MiddleEar" + "@id": "bts:ImagePhysicalSizeZUnit" }, { - "@id": "bts:MiddleLobeoftheRightLung" + "@id": "bts:ImagePixelsBigEndian" }, { - "@id": "bts:MiddleThirdoftheEsophagus" + "@id": "bts:ImagePlaneCount" }, { - "@id": "bts:MinorSalivaryGland" + "@id": "bts:ImageChannelSize" }, { - "@id": "bts:MonsPubis" + "@id": "bts:ImageNumberofTimepoints" }, { - "@id": "bts:MucosaoftheLip" + "@id": "bts:ImageXPixels" }, { - "@id": "bts:MucosaoftheLowerLip" + "@id": "bts:ImageYPixels" }, { - "@id": "bts:MucosaoftheUpperLip" + "@id": "bts:ImageZPixels" }, { - "@id": "bts:Muscle" - }, + "@id": "bts:ImagePixelType" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel2Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel2Id", + "rdfs:subClassOf": [ { - "@id": "bts:MusculusLatissimusDorsi" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel2_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:Myocardium" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel1.ImagingLevel1_id Value" + ] + }, + { + "@id": "bts:Cm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Cm", + "rdfs:subClassOf": [ { - "@id": "bts:Myometrium" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "cm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Mm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Mm", + "rdfs:subClassOf": [ { - "@id": "bts:NasalBone" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "mm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Μm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Μm", + "rdfs:subClassOf": [ { - "@id": "bts:NasalCartilage" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Β΅m", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Nm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Nm", + "rdfs:subClassOf": [ { - "@id": "bts:NasalCavity" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "nm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Γ…", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Γ…", + "rdfs:subClassOf": [ { - "@id": "bts:NasalSeptum" - }, + "@id": "bts:ImageWorkingDistanceUnit" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Γ…", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Air", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Air", + "rdfs:subClassOf": [ { - "@id": "bts:NasalTurbinate" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Air", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Oil", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Oil", + "rdfs:subClassOf": [ { - "@id": "bts:NasolacrimalDuct" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Oil", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Water", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Water", + "rdfs:subClassOf": [ { - "@id": "bts:Nasopharynx" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Water", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Multi", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Multi", + "rdfs:subClassOf": [ { - "@id": "bts:NeckSkin" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Multi", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Glycerol", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Glycerol", + "rdfs:subClassOf": [ { - "@id": "bts:Nerve" - }, + "@id": "bts:ImageImmersionType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Glycerol", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:True", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "True", + "rdfs:subClassOf": [ { - "@id": "bts:NervousSystem" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:Nipple" + "@id": "bts:ImagePixelsBigEndian" }, { - "@id": "bts:Nose" + "@id": "bts:ToolPackageDependenciesPresent" }, { - "@id": "bts:Nostril" + "@id": "bts:VisiumImageRe-orientation" }, { - "@id": "bts:ObturatorLymphNode" - }, + "@id": "bts:VisiumAppliedHardTrimming" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "True", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:False", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "False", + "rdfs:subClassOf": [ { - "@id": "bts:ObturatorNerve" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:OccipitalBone" + "@id": "bts:ImagePixelsBigEndian" }, { - "@id": "bts:OccipitalLobe" + "@id": "bts:ToolPackageDependenciesPresent" }, { - "@id": "bts:OccipitalLymphNode" + "@id": "bts:VisiumImageRe-orientation" }, { - "@id": "bts:OculomotorMuscle" - }, + "@id": "bts:VisiumAppliedHardTrimming" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "False", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3Image", + "@type": "rdfs:Class", + "rdfs:comment": "Quality controlled or co-registered image data", + "rdfs:label": "ImagingLevel3Image", + "rdfs:subClassOf": [ { - "@id": "bts:OculomotorNerve" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Imaging Level 3 Image", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:OlfactoryNerve" - }, + "@id": "bts:FileView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Omentum" + "@id": "bts:Component" }, { - "@id": "bts:OpticChiasm" + "@id": "bts:ImagingLevel3ImageId" }, { - "@id": "bts:OpticNerve" + "@id": "bts:Filename" }, { - "@id": "bts:OpticTract" + "@id": "bts:ImagingChannelKey" }, { - "@id": "bts:OralCavity" + "@id": "bts:ImagingLevel2Key" }, { - "@id": "bts:Orbit" + "@id": "bts:ImageAssayType" }, { - "@id": "bts:Oropharynx" + "@id": "bts:ImageProtocolLink" }, { - "@id": "bts:OtherSpecifiedPartsofPancreas" + "@id": "bts:ImagePlatformModel" }, { - "@id": "bts:OuterCanthus" + "@id": "bts:ImagePlatformManufacturer" }, { - "@id": "bts:Ovary" + "@id": "bts:ImageSoftware" }, { - "@id": "bts:Palate" + "@id": "bts:ImageObjective" }, { - "@id": "bts:PalatineTonsil" + "@id": "bts:ImageNominalMagnification" }, { - "@id": "bts:PalmarFascia" + "@id": "bts:ImageLenseAperture" }, { - "@id": "bts:Pancreas" + "@id": "bts:ImageWorkingDistance" }, { - "@id": "bts:PancreaticDuct" + "@id": "bts:ImageImmersionType" }, { - "@id": "bts:PancreaticLymphNode" + "@id": "bts:ImagePyramidal" }, { - "@id": "bts:ParaaorticLymphNode" + "@id": "bts:ImageZstack" }, { - "@id": "bts:Paraganglion" + "@id": "bts:ImageTimeseries" }, { - "@id": "bts:Parametrium" + "@id": "bts:ImageFOVIndex" }, { - "@id": "bts:ParanasalSinus" + "@id": "bts:ImageFOVSizeX" }, { - "@id": "bts:ParasympatheticNervousSystem" + "@id": "bts:ImageFOVSizeY" }, { - "@id": "bts:ParathyroidGland" + "@id": "bts:ImageFOVSizeYUnit" }, { - "@id": "bts:ParatrachealLymphNode" - }, + "@id": "bts:ImageFrameAveraging" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3ImageId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel3ImageId", + "rdfs:subClassOf": [ { - "@id": "bts:ParietalBone" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel3Image_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel2Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel2Key", + "rdfs:subClassOf": [ { - "@id": "bts:ParietalLobe" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel2 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel2.ImagingLevel2_id Value" + ] + }, + { + "@id": "bts:ImagingLevel3Segments", + "@type": "rdfs:Class", + "rdfs:comment": "Image segmentation mask information", + "rdfs:label": "ImagingLevel3Segments", + "rdfs:subClassOf": [ { - "@id": "bts:ParietalPleura" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Imaging Level 3 Segments", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:ParotidDuct" - }, + "@id": "bts:FileView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:ParotidGland" + "@id": "bts:Component" }, { - "@id": "bts:ParotidGlandLymphNode" + "@id": "bts:ImagingLevel3SegmentsId" }, { - "@id": "bts:Patella" + "@id": "bts:Filename" }, { - "@id": "bts:PectoralLymphNode" + "@id": "bts:ImagingLevel2Key" }, { - "@id": "bts:PectoralisMajor" + "@id": "bts:ImagingLevel3ImageKey" }, { - "@id": "bts:PelvicLymphNode" + "@id": "bts:ImageSegmentationDataType" }, { - "@id": "bts:Pelvis" + "@id": "bts:ImageParameterfile" }, { - "@id": "bts:Penis" + "@id": "bts:SoftwareandVersion" }, { - "@id": "bts:Pericardium" + "@id": "bts:ImageObjectClass" }, { - "@id": "bts:Perineum" + "@id": "bts:ImageObjectClassDescription" }, { - "@id": "bts:PeripheralNerve" - }, + "@id": "bts:ImageNumberofObjects" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3SegmentsId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel3SegmentsId", + "rdfs:subClassOf": [ { - "@id": "bts:PeritonealCavity" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel3Segments_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3ImageKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel3Image_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel3ImageKey", + "rdfs:subClassOf": [ { - "@id": "bts:Peritoneum" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel3Image Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel3Image.ImagingLevel3Image_id Value" + ] + }, + { + "@id": "bts:ImageSegmentationDataType", + "@type": "rdfs:Class", + "rdfs:comment": "Specifies how the segmentation is stored", + "rdfs:label": "ImageSegmentationDataType", + "rdfs:subClassOf": [ { - "@id": "bts:PharyngealTonsil" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Pharynx" + "@id": "bts:Mask" }, { - "@id": "bts:PiaMater" + "@id": "bts:Outline" }, { - "@id": "bts:PinealGland" + "@id": "bts:Polygon" }, { - "@id": "bts:PituitaryGland" + "@id": "bts:ProbabilityMap" }, { - "@id": "bts:Placenta" - }, + "@id": "bts:Point" + } + ], + "sms:displayName": "Image Segmentation Data Type", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ImageParameterfile", + "@type": "rdfs:Class", + "rdfs:comment": "Path in Synapse to a text file listing algorithm version numbers and relevant parameters needed to reproduce the analysis", + "rdfs:label": "ImageParameterfile", + "rdfs:subClassOf": [ { - "@id": "bts:PlantarFascia" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Parameter file", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImageObjectClass", + "@type": "rdfs:Class", + "rdfs:comment": "Defines the structure that the mask delineates", + "rdfs:label": "ImageObjectClass", + "rdfs:subClassOf": [ { - "@id": "bts:PlantarRegion" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Pleura" + "@id": "bts:Nucleus" }, { - "@id": "bts:PonsVarolii" + "@id": "bts:Cytoplasm" }, { - "@id": "bts:PoplitealLymphNode" + "@id": "bts:PlasmaMembrane" }, { - "@id": "bts:PortalLymphNode" + "@id": "bts:WholeCell" }, { - "@id": "bts:PostcricoidRegion" + "@id": "bts:Spot" }, { - "@id": "bts:PosteriorCranialFossa" - }, + "@id": "bts:Other" + } + ], + "sms:displayName": "Image Object Class", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ImageObjectClassDescription", + "@type": "rdfs:Class", + "rdfs:comment": "If Imaging Object Class is \"Other\", please use this field to provide a text description of the imaging object class associated with the segmentation data", + "rdfs:label": "ImageObjectClassDescription", + "rdfs:subClassOf": [ { - "@id": "bts:PosteriorMediastinum" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Object Class Description", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ImageNumberofObjects", + "@type": "rdfs:Class", + "rdfs:comment": "The number of objects (eg cells) described", + "rdfs:label": "ImageNumberofObjects", + "rdfs:subClassOf": [ { - "@id": "bts:PosteriorWalloftheBladder" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Number of Objects", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:Mask", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Mask", + "rdfs:subClassOf": [ { - "@id": "bts:PosteriorWalloftheHypopharynx" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Mask", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Outline", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Outline", + "rdfs:subClassOf": [ { - "@id": "bts:PosteriorWalloftheNasopharynx" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Outline", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Polygon", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Polygon", + "rdfs:subClassOf": [ { - "@id": "bts:PosteriorWalloftheOropharynx" - }, + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Polygon", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProbabilityMap", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ProbabilityMap", + "rdfs:subClassOf": [ { - "@id": "bts:PosteriorWallofthePharynx" + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Probability Map", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Point", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Point", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageSegmentationDataType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Point", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Nucleus", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Nucleus", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Nucleus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Cytoplasm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Cytoplasm", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cytoplasm", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PlasmaMembrane", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PlasmaMembrane", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Plasma Membrane", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:WholeCell", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "WholeCell", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Whole Cell", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Spot", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Spot", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageObjectClass" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Spot", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel4", + "@type": "rdfs:Class", + "rdfs:comment": "Derived imaging data or object by feature array", + "rdfs:label": "ImagingLevel4", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Imaging Level 4", + "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:FileView" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" }, { - "@id": "bts:PreauricularLymphNode" + "@id": "bts:ImagingLevel4Id" }, { - "@id": "bts:ProstateGland" + "@id": "bts:Filename" }, { - "@id": "bts:ProstaticUtricle" + "@id": "bts:ImagingLevel2Key" }, { - "@id": "bts:PsoasMuscle" + "@id": "bts:ImagingLevel3ImageKey" }, { - "@id": "bts:PubicBone" + "@id": "bts:ImagingLevel3SegmentsKey" }, { - "@id": "bts:PubicSymphysis" + "@id": "bts:ImageParameterfile" }, { - "@id": "bts:Pulmonary" + "@id": "bts:ImageSoftware" }, { - "@id": "bts:PulmonaryHilarLymphNode" + "@id": "bts:ImageNumberofObjects" }, { - "@id": "bts:Putamen" + "@id": "bts:ImageNumberofFeatures" }, { - "@id": "bts:Pylorus" + "@id": "bts:ImageObjectClass" }, { - "@id": "bts:PyriformSinus" + "@id": "bts:ImageSummaryStatistic" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel4Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas.", + "rdfs:label": "ImagingLevel4Id", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel4_id", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingLevel3SegmentsKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel3Segments_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel3SegmentsKey", + "rdfs:subClassOf": [ + { + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel3Segments Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel3Segments.ImagingLevel3Segments_id Value" + ] + }, + { + "@id": "bts:ImageNumberofFeatures", + "@type": "rdfs:Class", + "rdfs:comment": "The number of features (eg channels) described", + "rdfs:label": "ImageNumberofFeatures", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Image Number of Features", + "sms:required": "sms:true", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:ImageSummaryStatistic", + "@type": "rdfs:Class", + "rdfs:comment": "Function used to summarize object/feature intensity", + "rdfs:label": "ImageSummaryStatistic", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Mean" }, { - "@id": "bts:QuadricepsMuscleoftheThigh" + "@id": "bts:Median" }, { - "@id": "bts:RadialArtery" + "@id": "bts:NotSpecified" + } + ], + "sms:displayName": "Image Summary Statistic", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:Mean", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Mean", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageSummaryStatistic" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Mean", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Median", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Median", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageSummaryStatistic" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Median", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NotSpecified", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NotSpecified", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageSummaryStatistic" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Not Specified", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "IndividualId", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:IndividualdbGaPSubjectId", + "@type": "rdfs:Class", + "rdfs:comment": "The identifer assigned to the participant by dbGap", + "rdfs:label": "IndividualdbGaPSubjectId", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual dbGaP Subject Id", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:IndividualSex", + "@type": "rdfs:Class", + "rdfs:comment": "Biological sex associated with the specimen donor", + "rdfs:label": "IndividualSex", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Declinetoanswer" }, { - "@id": "bts:RadialNerve" + "@id": "bts:Don'tknow" }, { - "@id": "bts:RadiusBone" + "@id": "bts:Female" }, { - "@id": "bts:RathkePouch" + "@id": "bts:Intersex" }, { - "@id": "bts:RectosigmoidColon" + "@id": "bts:Male" }, { - "@id": "bts:RectosigmoidRegion" + "@id": "bts:Noneofthesedescribeme" }, { - "@id": "bts:Rectum" + "@id": "bts:Prefernottoanswer" }, { - "@id": "bts:RectusAbdominis" + "@id": "bts:Unknown" }, { - "@id": "bts:Renal" + "@id": "bts:X" + } + ], + "sms:displayName": "Individual Sex", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:IndividualGender", + "@type": "rdfs:Class", + "rdfs:comment": "Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.", + "rdfs:label": "IndividualGender", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Female" }, { - "@id": "bts:RenalArtery" + "@id": "bts:Male" }, { - "@id": "bts:RenalCalyx" + "@id": "bts:Intersex" }, { - "@id": "bts:RenalPelvis" + "@id": "bts:Unknown" }, { - "@id": "bts:ReticuloendothelialSystem" + "@id": "bts:Unspecified" }, { - "@id": "bts:Retina" + "@id": "bts:NotReported" + } + ], + "sms:displayName": "Individual Gender", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:IndividualAgeatDiagnosis", + "@type": "rdfs:Class", + "rdfs:comment": "Age at the time the individual was diagnosed, expressed in years.", + "rdfs:label": "IndividualAgeatDiagnosis", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual Age at Diagnosis", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:IndividualDiseaseType", + "@type": "rdfs:Class", + "rdfs:comment": "The type of tumor associated with the specimen. Multiple values permitted, comma separated.", + "rdfs:label": "IndividualDiseaseType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:AcinarCellNeoplasms" }, { - "@id": "bts:RetromolarTrigone" + "@id": "bts:AdenomasandAdenocarcinomas" }, { - "@id": "bts:RetroperitonealLymphNode" + "@id": "bts:AdnexalandSkinAppendageNeoplasms" }, { - "@id": "bts:Retroperitoneum" + "@id": "bts:BasalCellNeoplasms" }, { - "@id": "bts:RetropharyngealLymphNode" + "@id": "bts:BloodVesselTumors" }, { - "@id": "bts:RoundLigamentoftheUterus" + "@id": "bts:ComplexMixedandStromalNeoplasms" }, { - "@id": "bts:SacralBone" + "@id": "bts:Cystic;MucinousandSerousNeoplasms" }, { - "@id": "bts:SacralLymphNode" + "@id": "bts:DuctalandLobularNeoplasms" }, { - "@id": "bts:SacralNerve" + "@id": "bts:EpithelialNeoplasms;NOS" }, { - "@id": "bts:SacralPlexus" + "@id": "bts:FibroepithelialNeoplasms" }, { - "@id": "bts:SalivaryGland" + "@id": "bts:FibromatousNeoplasms" }, { - "@id": "bts:ScaleneLymphNode" + "@id": "bts:GermCellNeoplasms" }, { - "@id": "bts:Scalp" + "@id": "bts:GiantCellTumors" }, { - "@id": "bts:Scapula" + "@id": "bts:Gliomas" }, { - "@id": "bts:SciaticNerve" + "@id": "bts:GranularCellTumorsandAlveolarSoftPartSarcomas" }, { - "@id": "bts:Sclera" + "@id": "bts:ImmunoproliferativeDiseases" }, { - "@id": "bts:Scrotum" + "@id": "bts:Leukemias" }, { - "@id": "bts:SellaTurcica" + "@id": "bts:LipomatousNeoplasms" }, { - "@id": "bts:SeminalVesicle" + "@id": "bts:LymphaticVesselTumors" }, { - "@id": "bts:Shoulder" + "@id": "bts:MastCellNeoplasm" }, { - "@id": "bts:ShoulderGirdle" + "@id": "bts:Meningiomas" }, { - "@id": "bts:ShoulderJoint" + "@id": "bts:MesothelialNeoplasms" }, { - "@id": "bts:SigmoidColon" + "@id": "bts:MiscellaneousBoneTumors" }, { - "@id": "bts:SkeletalMuscleTissue" + "@id": "bts:MiscellaneousTumors" }, { - "@id": "bts:Skin" + "@id": "bts:MucoepidermoidNeoplasms" }, { - "@id": "bts:SkinOfTheAxilla" + "@id": "bts:MyelodysplasticSyndromes" }, { - "@id": "bts:SkinoftheFace" + "@id": "bts:MyomatousNeoplasms" }, { - "@id": "bts:SkinoftheLip" + "@id": "bts:MyxomatousNeoplasms" }, { - "@id": "bts:SkinoftheLowerLimbandHip" + "@id": "bts:Neoplasms;NOS" }, { - "@id": "bts:SkinoftheScalpandNeck" + "@id": "bts:NerveSheathTumors" }, { - "@id": "bts:SkinoftheTrunk" + "@id": "bts:NeuroepitheliomatousNeoplasms" }, { - "@id": "bts:SkinoftheUpperLimbandShoulder" + "@id": "bts:NeviandMelanomas" }, { - "@id": "bts:Skull" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Skullcap" + "@id": "bts:NotOtherwiseSpecified" }, { - "@id": "bts:SmallIntestine" + "@id": "bts:NotReported" }, { - "@id": "bts:SpermaticCord" + "@id": "bts:OdontogenicTumors" }, { - "@id": "bts:SphenoidBone" + "@id": "bts:OsseousandChondromatousNeoplasms" }, { - "@id": "bts:SphenoidSinus" + "@id": "bts:ParagangliomasandGlomusTumors" }, { - "@id": "bts:SphincterofOddi" + "@id": "bts:PlasmaCellNeoplasm" }, { - "@id": "bts:SpinalCord" + "@id": "bts:SoftTissueTumorsandSarcomas;NOS" }, { - "@id": "bts:SpinalCordDuraMater" + "@id": "bts:SquamousCellNeoplasms" }, { - "@id": "bts:SpinalMeninges" + "@id": "bts:Synovial-likeNeoplasms" }, { - "@id": "bts:SpinalNerve" + "@id": "bts:ThymicEpithelialNeoplasms" }, { - "@id": "bts:Spleen" + "@id": "bts:TransitionalCellPapillomasandCarcinomas" }, { - "@id": "bts:SplenicFlexure" + "@id": "bts:Trophoblasticneoplasms" }, { - "@id": "bts:SplenicHilarLymphNode" + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Individual Disease Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualPrimaryDiagnosis", + "@type": "rdfs:Class", + "rdfs:comment": "Text term used to describe the patient's histologic diagnosis, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).", + "rdfs:label": "IndividualPrimaryDiagnosis", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:HeadandNeckSquamousCellCarcinoma" }, { - "@id": "bts:SternocleidomastoidMuscle" + "@id": "bts:Astroblastoma;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:SternocostalJoint" + "@id": "bts:Medulloblastoma;HypercellularLesionWithMarkedAtypia" }, { - "@id": "bts:Stomach" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;NOSOrNEC" }, { - "@id": "bts:SubclavianArtery" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:Subcutis" + "@id": "bts:Neuroma;NOS" }, { - "@id": "bts:Subglottis" + "@id": "bts:PrecursorCellLymphoblasticLeukemia;NOS" }, { - "@id": "bts:SublingualLymphNode" + "@id": "bts:HypercellularNeuroepithelialTumorWithSomeFeaturesOfGlioma;PossiblyHighGrade" }, { - "@id": "bts:SublingualSalivaryGland" + "@id": "bts:AcuteLeukemia;NOS" }, { - "@id": "bts:SubmandibularDuct" + "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;PapillaryGlioneuronalTumor" }, { - "@id": "bts:SubmandibularGland" + "@id": "bts:High-gradeserouscarcinoma" }, { - "@id": "bts:SubmandibularLymphNode" + "@id": "bts:MyeloidLeukemia;NOS" }, { - "@id": "bts:SuperiorVenaCava" + "@id": "bts:Choriocarcinoma;NOS" }, { - "@id": "bts:SuperiorWalloftheNasopharynx" + "@id": "bts:EmbryonalCarcinoma;NOS;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Supraclavicular" + "@id": "bts:GiantCellTumorOfBone;NOS" }, { - "@id": "bts:SupraclavicularLymphNode" + "@id": "bts:Adenocarcinoma;IntestinalType" }, { - "@id": "bts:Supraglottis" + "@id": "bts:NotSpecifiedInData" }, { - "@id": "bts:SuprasellarRegion" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ChoroidPlexusTumors;ChoroidPlexusPapilloma" }, { - "@id": "bts:SupratentorialBrain" + "@id": "bts:DuctalCarcinomaNOS" }, { - "@id": "bts:SympatheticNervousSystem" + "@id": "bts:RenalCellCarcinoma;NOS" }, { - "@id": "bts:SynovialBursa" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(1;19)(Q23;P13.3);E2A-PBX1(TCF3-PBX1)" }, { - "@id": "bts:SynovialFluid" + "@id": "bts:MyelodysplasticSyndrome;NOS" }, { - "@id": "bts:TailofthePancreas" + "@id": "bts:LowGradeFibromyxoidSarcoma" }, { - "@id": "bts:TarsalBone" + "@id": "bts:BenignCysticNephroma" }, { - "@id": "bts:TemporalBone" + "@id": "bts:GlialNeoplasm" }, { - "@id": "bts:TemporalLobe" + "@id": "bts:PapillaryAdenocarcinoma;NOS" }, { - "@id": "bts:Tendon" + "@id": "bts:TelangiectaticOsteosarcoma" }, { - "@id": "bts:TendonSheath" + "@id": "bts:Ganglioglioma;NOS;MalignantPeripheralNerveSheathTumor;NOS" }, { - "@id": "bts:TentoriumCerebelli" + "@id": "bts:CentralNeurocytoma" }, { - "@id": "bts:Testis" + "@id": "bts:GiantCellTumorOfSoftParts;NOS" }, { - "@id": "bts:Thalamus" + "@id": "bts:GiantCellTumorOfBone;Malignant" }, { - "@id": "bts:Thigh" + "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated" }, { - "@id": "bts:ThirdVentricle" + "@id": "bts:Glioma;Malignant;DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:ThoracicDuct" + "@id": "bts:AcuteMegakaryoblasticLeukemia" }, { - "@id": "bts:ThoracicEsophagus" + "@id": "bts:Germinoma;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:ThoracicLymphNode" + "@id": "bts:DysembryoplasticNeuroepithelialTumorWithAdjacentCorticalDysplasia;WHOGrade1" }, { - "@id": "bts:Thorax" + "@id": "bts:SupratentorialEpendymoma;NOS" }, { - "@id": "bts:ThymusGland" + "@id": "bts:MyxoidLiposarcoma" }, { - "@id": "bts:ThyroglossalDuct" + "@id": "bts:AcuteLymphoblasticLeukemia" }, { - "@id": "bts:ThyroidCartilage" + "@id": "bts:CombinedSmallCell-SquamousCellCarcinoma" }, { - "@id": "bts:ThyroidGland" + "@id": "bts:HighGradeSpindleCellSarcoma" }, { - "@id": "bts:Tibia" + "@id": "bts:Medulloblastoma;Group3Subtype(WHOGrade4)" }, { - "@id": "bts:Toe" + "@id": "bts:AcuteMonocyticLeukemia" }, { - "@id": "bts:Toenail" + "@id": "bts:Neoplasm;NOS" }, { - "@id": "bts:Tongue" + "@id": "bts:Retinoblastoma;Grade3" }, { - "@id": "bts:TonsillarFossa" + "@id": "bts:YolkSacTumor;NOS;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:TonsillarPillar" + "@id": "bts:MyofibroblasticTumor;NOS" }, { - "@id": "bts:ToothSocket" + "@id": "bts:SexCord-GonadalStromalTumor;MixedForms" }, { - "@id": "bts:Trachea" + "@id": "bts:AdamantinomatousCraniopharyngioma" }, { - "@id": "bts:TracheobronchialLymphNode" + "@id": "bts:MesoblasticNephroma" }, { - "@id": "bts:Tragus" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;Low-GradeGlioma;PolymorphousLow-GradeNeuroepithelialTumorOfTheYoung" }, { - "@id": "bts:TransverseColon" + "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;Infant-TypeHemisphericGlioma" }, { - "@id": "bts:TrapeziusMuscle" + "@id": "bts:Rhabdomyosarcoma;NOS" }, { - "@id": "bts:TricepsBrachii" + "@id": "bts:MucinousAdenocarcinoma;EndocervicalType" }, { - "@id": "bts:TrigeminalNerve" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:TrochlearNerve" + "@id": "bts:Ganglioglioma;NOS;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:TrueVocalCord" + "@id": "bts:DermoidCyst" }, { - "@id": "bts:Trunk" + "@id": "bts:AdenocarcinomaCombinedWithOtherTypesOfCarcinoma" }, { - "@id": "bts:TunicaVaginalis" + "@id": "bts:PrecursorCellLymphoblasticLymphoma;NOS" }, { - "@id": "bts:Ulna" + "@id": "bts:PosteriorFossaEpendymoma;CNSWHOGrade2" }, { - "@id": "bts:UlnarArtery" + "@id": "bts:PituitaryAdenoma;NOS" }, { - "@id": "bts:UlnarNerve" + "@id": "bts:Neoplasm;Malignant;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:Umbilicus" + "@id": "bts:SexCord-GonadalStromalTumor;IncompletelyDifferentiated" }, { - "@id": "bts:Uncus" + "@id": "bts:HighGradeFollicularDerivedThyroidCarcinoma" }, { - "@id": "bts:UndescendedTestes" + "@id": "bts:DesmoplasticFibroma" }, { - "@id": "bts:UpperExtremity" + "@id": "bts:Perineuroma" }, { - "@id": "bts:UpperGingiva" + "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant;CNSWHOGrade4" }, { - "@id": "bts:UpperLobeoftheLung" + "@id": "bts:Ganglioglioma" }, { - "@id": "bts:UpperThirdoftheEsophagus" + "@id": "bts:Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:Upper-InnerQuadrantoftheBreast" + "@id": "bts:ParatesticularRhabdomyosarcomaWithDiffuseAnaplasia" }, { - "@id": "bts:Upper-OuterQuadrantoftheBreast" + "@id": "bts:Hemangioblastoma" }, { - "@id": "bts:Urachus" + "@id": "bts:ColorectalCarcinoma" }, { - "@id": "bts:Ureter" + "@id": "bts:AcuteMyelomonocyticLeukemia" }, { - "@id": "bts:UretericOrifice" + "@id": "bts:DiffuseMidlineGlioma;H3K27-Altered" }, { - "@id": "bts:UreteropelvicJunction" + "@id": "bts:T-LymphoblasticLymphoma" }, { - "@id": "bts:Urethra" + "@id": "bts:Lymphangioma;NOS" }, { - "@id": "bts:UterineGland" + "@id": "bts:Neoplasm;Benign" }, { - "@id": "bts:UterineLigament" + "@id": "bts:PapillaryIntralymphaticAngioendothelioma" }, { - "@id": "bts:Uterus" + "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;ZFTAFusion-Positive" }, { - "@id": "bts:Uvea" + "@id": "bts:UnclassifiedSarcomaWithRoundCellMorphology" }, { - "@id": "bts:Uvula" + "@id": "bts:Glioma" }, { - "@id": "bts:Vagina" + "@id": "bts:Medulloblastoma;Classic(Biphasic)HistologicType;Non-SHH/Non-WNTMolecularGroup;CNSWHOGrade4" }, { - "@id": "bts:VaginalFornix" + "@id": "bts:SoftTissueSarcoma" }, { - "@id": "bts:VagusNerve" + "@id": "bts:Xanthogranuloma" }, { - 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"rdfs:label": "IndividualTumorGrade", - "rdfs:subClassOf": [ + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:CPNET" + }, { - "@id": "bts:G1" + "@id": "bts:MycosisFungoides;LangerhansCellHistiocytosis;NOS" }, { - "@id": "bts:G2" + "@id": "bts:T-LymphoblasticLeukemia" }, { - "@id": "bts:G3" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:G4" + "@id": "bts:ClearCellMeningioma;Meningioma;Other" }, { - "@id": "bts:GX" + "@id": "bts:AmeloblasticCarcinosarcoma" }, { - "@id": "bts:GB" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:HighGrade" + "@id": "bts:MeningothelialMeningioma" }, { - "@id": "bts:IntermediateGrade" + "@id": "bts:EpithelioidCellMelanoma" }, { - "@id": "bts:LowGrade" + "@id": "bts:ProstateCancer" }, { - "@id": "bts:Unknown" + "@id": "bts:Paraganglioma;Malignant" }, { - "@id": "bts:NotReported" + "@id": "bts:SmallCellSarcoma" }, { - "@id": "bts:NotApplicable" - } - ], - "sms:displayName": "Individual Tumor Grade", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IndividualTumorLymphNodeStage", - "@type": "rdfs:Class", - "rdfs:comment": "Extent of the regional lymph node involvement for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.", - "rdfs:label": "IndividualTumorLymphNodeStage", - "rdfs:subClassOf": [ + "@id": "bts:CystosarcomaPhyllodes;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Seminoma;NOS" + }, { - "@id": "bts:N0" + "@id": "bts:YolkSacTumor;NOS" }, { - "@id": "bts:N0(i+)" + "@id": "bts:IntraductalCarcinomaNOS" }, { - "@id": "bts:N0(i-)" + "@id": "bts:Adenocarcinoma;EndocervicalType" }, { - 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"@type": "rdfs:Class", - "rdfs:comment": "The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.", - "rdfs:label": "IndividualKnownMetastasisSites", - "rdfs:subClassOf": [ + "@id": "bts:OssifyingFibromyxoidTumor;NOS" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:DiffuseLargeB-CellLymphoma;NOS" + }, { - "@id": "bts:4thventricle" + "@id": "bts:AdenocarcinomaWithNeuroendocrineDifferentiation" }, { - "@id": "bts:Abdomen" + "@id": "bts:AtypicalMeningioma" }, { - "@id": "bts:Abdominalmass" + "@id": "bts:Pineoblastoma" }, { - "@id": "bts:AbdominalWall" + "@id": "bts:ChronicMyeloidLeukemia;NOS" }, { - "@id": "bts:Acetabulum" + "@id": "bts:AtypicalChoroidPlexusPapilloma" }, { - "@id": "bts:Adenoid" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFB" }, { - "@id": "bts:Adipose" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS;High-GradeGlioma" }, { - "@id": "bts:Adrenal" + "@id": "bts:OxyphilicAdenocarcinoma" }, { - "@id": "bts:Adrenalmass" + "@id": "bts:FavorPilocyticAstrocytoma;CNSWHOGrade1" }, { - "@id": "bts:AlveolarRidge" + "@id": "bts:PoorlyDifferentiated;IntermediateMitotic-KaryorrhecticIndex" }, { - "@id": "bts:AmnioticFluid" + "@id": "bts:ClearCellMeningioma" }, { - "@id": "bts:AmpullaOfVater" + "@id": "bts:Medulloblastoma;ClassicHistologicType;CNSWHOGrade4" }, { - "@id": "bts:AnalSphincter" + "@id": "bts:AppearancesConsistentWithAlveolarSoftPartSarcoma" }, { - "@id": "bts:Ankle" + "@id": "bts:DedifferentiatedLiposarcoma" }, { - "@id": "bts:Anorectum" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:AntecubitalFossa" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Antrum" + "@id": "bts:TubularAdenocarcinoma" }, { - "@id": "bts:Anus" + "@id": "bts:Rhabdomyosarcoma;MostLikelyAnEmbryonalCarcinoma" }, { - "@id": "bts:Aorta" + "@id": "bts:Adenocarcinoma;NOS" }, { - "@id": "bts:AorticBody" + "@id": "bts:PleuropulmonaryBlastoma" }, { - "@id": "bts:Appendix" + "@id": "bts:BasaloidSquamousCellCarcinoma" }, { - "@id": "bts:AqueousFluid" + "@id": "bts:Oligodendroglioma;Anaplastic;NOS" }, { - "@id": "bts:Arm" + "@id": "bts:PilocyticAstrocytoma;WHOGrade1" }, { - "@id": "bts:Artery" + "@id": "bts:NotApplicable" }, { - "@id": "bts:AscendingColon" + "@id": "bts:AbdominalFibromatosis" }, { - "@id": "bts:AscendingColonHepaticFlexure" + "@id": "bts:Hamartoma" }, { - "@id": "bts:AuditoryCanal" + "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:AutonomicNervousSystem" + "@id": "bts:ChoroidPlexusPapilloma;NOS;ChoroidPlexusTumors" }, { - "@id": "bts:Axilla" + "@id": "bts:BurkittLymphoma;NOS" }, { - "@id": "bts:Back" + "@id": "bts:LymphoepithelialCarcinoma" }, { - "@id": "bts:Bilateral" + "@id": "bts:Bronchiolo-AlveolarCarcinoma;Non-Mucinous" }, { - "@id": "bts:BileDuct" + "@id": "bts:KidneyClearCellRenalCarcinoma" }, { - "@id": "bts:Bladder" + "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma" }, { - "@id": "bts:Blood" + "@id": "bts:AdenocarcinomaInSituInAdenomatousPolyp" }, { - "@id": "bts:BloodVessel" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant" }, { - "@id": "bts:Bone" + "@id": "bts:SmallBlueCellTumor.FavorMedulloblastoma" }, { - "@id": "bts:Bonemarrow" + "@id": "bts:BLymphoblasticLeukemia/Lymphoma;NOS" }, { - "@id": "bts:BoneMarrow" + "@id": "bts:EmbryonalTumorWithMulti-LayeredRosettes" }, { - "@id": "bts:BoneMarrowmetastasis" + "@id": "bts:ChronicEosinophilicLeukemia" }, { - "@id": "bts:Bowel" + "@id": "bts:MixedGlioma" }, { - "@id": "bts:Brain" + "@id": "bts:BasalCellAdenocarcinoma" }, { - "@id": "bts:Brainstem" + "@id": "bts:OlfactoryNeuroblastoma" }, { - "@id": "bts:BrainStem" + "@id": "bts:TransitionalCellCarcinoma;NOS" }, { - "@id": "bts:Breast" + "@id": "bts:ClearCellSarcoma;NOS" }, { - "@id": "bts:BroadLigament" + "@id": "bts:EmbryonalRhabdomyosarcoma;High-Grade" }, { - "@id": "bts:Bronchiole" + "@id": "bts:AngiocentricGlioma" }, { - "@id": "bts:Bronchus" + "@id": "bts:DiffuseMidlineGlioma;H3K27Altered;WHOGrade4" }, { - "@id": "bts:Brow" + "@id": "bts:Osteoblastoma;NOS" }, { - "@id": "bts:BuccalCavity" + "@id": "bts:MalignantNeoplasmWithRhabdomyoblasticDifferentiation;HighGrade" }, { - "@id": "bts:BuccalMucosa" + "@id": "bts:MyxopapillaryEpendymoma(CNSWHOGradeII)" }, { - "@id": "bts:Buttock" + "@id": "bts:MelanomaInSitu" }, { - "@id": "bts:Calf" + "@id": "bts:SecretoryCarcinoma" }, { - "@id": "bts:Capillary" + "@id": "bts:PilocyticAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:Cardia" + "@id": "bts:Rhabdomyosarcoma;FavorAlveolarType" }, { - "@id": "bts:Carina" + "@id": "bts:Adenocarcinoma;MetastaticNOS" }, { - "@id": "bts:CarotidArtery" + "@id": "bts:Fibrosarcoma;NOS" }, { - "@id": "bts:CarotidBody" + "@id": "bts:Glioblastoma" }, { - "@id": "bts:Cartilage" + "@id": "bts:AtypicalChoroidPlexusPapilloma;ChoroidPlexusTumors" }, { - "@id": "bts:Cecum" + "@id": "bts:Ganglioneuroma;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Cell-Line" + "@id": "bts:DesmoplasticMelanoma;NOS" }, { - "@id": "bts:CentralNervousSystem" + "@id": "bts:ChoroidPlexusCarcinoma" }, { - "@id": "bts:Cerebellum" + "@id": "bts:SoftTissueTumor;Benign" }, { - "@id": "bts:CerebralCortex" + "@id": "bts:Medulloblastoma;NOS" }, { - "@id": "bts:CerebrospinalFluid" + "@id": "bts:Glioblastoma;NOS;Medulloblastoma;NOS" }, { - "@id": "bts:Cerebrum" + "@id": "bts:ResidualAstrocytoma" }, { - "@id": "bts:Cervicalnode" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(V;11q23);MLLRearranged" }, { - "@id": "bts:CervicalSpine" + "@id": "bts:ExtraAdrenalParaganglioma" }, { - "@id": "bts:Cervix" + "@id": "bts:MucoepidermoidCarcinoma" }, { - "@id": "bts:Chest" + "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:ChestWall" + "@id": "bts:ChoroidPlexusPapilloma;NOS" }, { - "@id": "bts:Chin" + "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:Clavicle" + "@id": "bts:B-LymphoblasticLeukemia/Lymphoma;NOS" }, { - "@id": "bts:Clitoris" + "@id": "bts:HodgkinLymphoma;NodularSclerosis;NOS" }, { - "@id": "bts:Colon" + "@id": "bts:Fibroma" }, { - "@id": "bts:Colon-MucosaOnly" + "@id": "bts:Craniopharyngioma;NOS;AdamantinomatousCraniopharyngioma" }, { - "@id": "bts:CommonDuct" + "@id": "bts:T-Cell/HistiocyteRichLargeB-CellLymphoma" }, { - "@id": "bts:Conjunctiva" + "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade4" }, { - "@id": "bts:ConnectiveTissue" + "@id": "bts:AcuteErythroidLeukemia" }, { - "@id": "bts:Dermal" + "@id": "bts:Glioma;HistologicallyLowGrade" }, { - "@id": "bts:DescendingColon" + "@id": "bts:MucousAdenocarcinoma" }, { - "@id": "bts:Diaphragm" + "@id": "bts:Glioma;Malignant;Ganglioglioma;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:Distalfemur" + "@id": "bts:NodularMelanoma" }, { - "@id": "bts:Duodenum" + "@id": "bts:SynovialSarcoma;Biphasic" }, { - "@id": "bts:Ear" + "@id": "bts:Neoplasm;Metastatic" }, { - "@id": "bts:EarCanal" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:Effusion" + "@id": "bts:Thymoma;NOS" }, { - "@id": "bts:Elbow" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:EndocrineGland" + "@id": "bts:Desmoplastic/NodularMedulloblastoma" }, { - "@id": "bts:Epididymis" + "@id": "bts:PapillaryGlioneuronalTumor" }, { - "@id": "bts:EpiduralSpace" + "@id": "bts:MixedPhenotypeAcuteLeukemia;T/Myeloid;NOS" }, { - "@id": "bts:Esophageal;Distal" + "@id": "bts:Cholangiocarcinoma" }, { - "@id": "bts:Esophageal;Mid" + "@id": "bts:Astroblastoma;MN1-Altered.HistologicallyHigh-Grade" }, { - "@id": "bts:Esophageal;Proximal" + "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated;WithHeterologousElements" }, { - "@id": "bts:EsophagogastricJunction" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;Infant-TypeHemisphericGlioma" }, { - "@id": "bts:Esophagus" + "@id": "bts:JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Esophagus-MucosaOnly" + "@id": "bts:EmbryonalNeoplasmWithINI-1LossByImmunohistochemistry" }, { - "@id": "bts:Eye" + "@id": "bts:MyeloidLeukemiaWithMyelodysplasia-RelatedChanges" }, { - "@id": "bts:FallopianTube" + "@id": "bts:PrimaryCutaneousFollicleCenterLymphoma" }, { - "@id": "bts:FemoralArtery" + "@id": "bts:ChoroidPlexusCarcinoma;WHOGrade3" }, { - "@id": "bts:FemoralVein" + "@id": "bts:InfiltratingDuctCarcinomaNOS" }, { - "@id": "bts:Femur" + "@id": "bts:TLymphoblasticLeukemia/Lymphoma" }, { - "@id": "bts:Fibroblasts" + "@id": "bts:Glioma;Malignant;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:Fibula" + "@id": "bts:MixedGermCellTumor;MyelodysplasticSyndromeWithExcessBlasts" }, { - "@id": "bts:Finger" + "@id": "bts:ClearCellAdenocarcinoma;NOS" }, { - "@id": "bts:FloorOfMouth" + "@id": "bts:CutaneousT-CellLymphoma;NOS" }, { - "@id": "bts:Fluid" + "@id": "bts:Germinoma" }, { - "@id": "bts:Foot" + "@id": "bts:Neoplasm;Malignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Forearm" + "@id": "bts:MeningealMelanocytoma" }, { - "@id": "bts:Forehead" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Foreskin" + "@id": "bts:AcutePromyelocyticLeukemia;T(15;17)(Q22;Q11-12)" }, { - "@id": "bts:FrontalCortex" + "@id": "bts:AlveolarSoftPartSarcoma" }, { - "@id": "bts:FrontalLobe" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:FundusOfStomach" + "@id": "bts:MixedEpithelioidAndSpindleCellMelanoma" }, { - "@id": "bts:Gallbladder" + "@id": "bts:CNSEmbryonalTumor;NOS;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Ganglia" + "@id": "bts:MalignantTumor;SpindleCellType" }, { - "@id": "bts:GastroesophagealJunction" + "@id": "bts:Glioma;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:GastrointestinalTract" + "@id": "bts:Glioma;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Glottis" + "@id": "bts:EndometrioidCarcinoma;NOS" }, { - "@id": "bts:Groin" + "@id": "bts:LungSquamousCellCarcinoma;NOS" }, { - "@id": "bts:Gum" + "@id": "bts:PapillaryUrothelialCarcinoma;Non-Invasive" }, { - "@id": "bts:Hand" + "@id": "bts:Neuroblastoma;UndifferentiatedType" }, { - "@id": "bts:HardPalate" + "@id": "bts:PeriostealOsteosarcoma" }, { - "@id": "bts:Head&Neck" + "@id": "bts:MixedPhenotypeAcuteLeukemia;B/Myeloid;NOS" }, { - "@id": "bts:Head-FaceOrNeck" + "@id": "bts:InflammatoryCarcinoma" }, { - "@id": "bts:Heart" + "@id": "bts:Glioblastoma;NOS" }, { - "@id": "bts:Hepatic" + "@id": "bts:Carcinoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:HepaticDuct" + "@id": "bts:SquamousCellCarcinoma;NOS" }, { - "@id": "bts:HepaticFlexure" + "@id": "bts:HypocellularLowGradeLesion" }, { - "@id": "bts:HepaticVein" + "@id": "bts:GlioblastomaMultiforme" }, { - "@id": "bts:Hip" + "@id": "bts:Pancreas-UndifferentiatedCarcinoma" }, { - "@id": "bts:Hippocampus" + "@id": "bts:DifferentiatingNeuroblastoma" }, { - "@id": "bts:Humerus" + "@id": "bts:MyxoidSpindleCellTumor" }, { - "@id": "bts:Hypopharynx" + "@id": "bts:MerkelCellTumor" }, { - "@id": "bts:Ileum" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS;CNSSarcoma;CNSSarcoma;NOSOrNEC" }, { - "@id": "bts:Ilium" + "@id": "bts:Hemangioma;NOS" }, { - "@id": "bts:IndexFinger" + "@id": "bts:AcuteMyeloidLeukemiaWithAbnormalMarrowEosinophils" }, { - "@id": "bts:Ischium" + "@id": "bts:WellDifferentiatedNeuroendocrinceTumor;Grade1" }, { - "@id": "bts:IsletCells" + "@id": "bts:Ganglioglioma;Anaplastic" }, { - "@id": "bts:Jaw" + "@id": "bts:EpendymomaWHOGrade2" }, { - "@id": "bts:Jejunum" + "@id": "bts:SynovialSarcoma;NOS" }, { - "@id": "bts:Joint" + "@id": "bts:ThymicCarcinoma;NOS" }, { - "@id": "bts:Kidney" + "@id": "bts:TumorCells;Malignant" }, { - "@id": "bts:Knee" + "@id": "bts:PilomyxoidAstrocytoma" }, { - "@id": "bts:L.DistalFemur" + "@id": "bts:PapillaryCarcinoma;ColumnarCell" }, { - "@id": "bts:L.Femur" + "@id": "bts:PlexiformFibrohistiocyticTumor" }, { - "@id": "bts:L.Kidney" + "@id": "bts:Astrocytoma;NOS;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:L.Occipitalmass" + "@id": "bts:Carcinoma;Undifferentiated;NOS" }, { - "@id": "bts:L.ProximalTibia" + "@id": "bts:DermatofibrosarcomaProtuberans;NOS" }, { - "@id": "bts:LacrimalGland" + "@id": "bts:HighGradeGliomaWithNecrosis;WHOGrade4" }, { - "@id": "bts:LargeBowel" + "@id": "bts:Infiltratingductularcarcinoma" }, { - "@id": "bts:Laryngopharynx" + "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges;JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Larynx" + "@id": "bts:InfiltratingDuctAndMucinousCarcinoma" }, { - "@id": "bts:LeftBonemarrow" + "@id": "bts:IntraductalPapillaryCarcinoma" }, { - "@id": "bts:Leftthigh" + "@id": "bts:SerousSurfacePapillaryCarcinoma" }, { - "@id": "bts:Leg" + "@id": "bts:InvasiveCarcinoma" }, { - "@id": "bts:Leptomeninges" + "@id": "bts:HighGradeMalignantEpithelioidNeoplasm" }, { - "@id": "bts:Ligament" + "@id": "bts:FavorPilocyticAstrocytomaWithIncreasedProliferationIndices" }, { - "@id": "bts:Lip" + "@id": "bts:Medulloblastoma;ClassicMorphology;CNSWHOGrade4;NON-WNT/NON-SHH;Group4SubtypeByMethylation" }, { - "@id": "bts:Liver" + "@id": "bts:CompositeHodgkinAndNon-HodgkinLymphoma" }, { - "@id": "bts:Livermetastasis" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT;NOSOrNEC" }, { - "@id": "bts:LumbarSpine" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-TYR" }, { - "@id": "bts:Lung" + "@id": "bts:PrimaryCutaneousCD30PositiveT-CellLymphoproliferativeDisorder" }, { - "@id": "bts:Lungmass" + "@id": "bts:Hemangioendothelioma;NOS" }, { - "@id": "bts:Lungmet" + "@id": "bts:HypercellularLesionWithAtypia" }, { - "@id": "bts:Lungmetastasis" + "@id": "bts:EmbryonalCarcinoma;NOS" }, { - "@id": "bts:Lung/pleura" + "@id": "bts:Subependymoma;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:LymphNode" + "@id": "bts:GermCellTumor;Nonseminomatous" }, { - "@id": "bts:LymphNodemet" + "@id": "bts:AdrenalCorticalCarcinoma" }, { - "@id": "bts:LymphNode(s)Axilla" + "@id": "bts:OlfactoryNeurocytoma" }, { - "@id": "bts:LymphNode(s)Cervical" + "@id": "bts:LargeCellMedulloblastoma;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:LymphNode(s)Distant" + "@id": "bts:NuclearProteinInTestis(NUT)-AssociatedCarcinoma" }, { - "@id": "bts:LymphNode(s)Epitrochlear" + "@id": "bts:Epithelial-MyoepithelialCarcinoma" }, { - "@id": "bts:LymphNode(s)Femoral" + "@id": "bts:SquamousCellCarcinoma;Keratinizing;NOS" }, { - "@id": "bts:LymphNode(s)Hilar" + "@id": "bts:Ganglioneuroma;Other;Schwannoma" }, { - "@id": "bts:LymphNode(s)Iliac-Common" + "@id": "bts:GlomusTumor;Malignant" }, { - "@id": "bts:LymphNode(s)Iliac-External" + "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:LymphNode(s)Inguinal" + "@id": "bts:MalignantLymphoma;Non-Hodgkin;NOS" }, { - "@id": "bts:LymphNode(s)InternalMammary" + "@id": "bts:EmbryonalRhabdomyosarcoma;NOS;CNSEmbryonalTumor;NOS" }, { - "@id": "bts:LymphNode(s)Mammary" + "@id": "bts:TenosynovialGiantCellTumor;NOS" }, { - "@id": "bts:LymphNode(s)Mesenteric" + "@id": "bts:HistologicallyLow-GradeGlioma" }, { - "@id": "bts:LymphNode(s)Occipital" + "@id": "bts:Chordoma;NOS;Ganglioneuroblastoma" }, { - "@id": "bts:LymphNode(s)Paraaortic" + "@id": "bts:Ependymoma;NOS" }, { - "@id": "bts:LymphNode(s)Parotid" + "@id": "bts:InvasiveMammaryCarcinoma" }, { - "@id": "bts:LymphNode(s)Pelvic" + "@id": "bts:RhabdoidTumor;Malignant" }, { - "@id": "bts:LymphNode(s)Popliteal" + "@id": "bts:Medulloblastoma;ClassicHistology" }, { - "@id": "bts:LymphNode(s)Regional" + "@id": "bts:AdenocarcinomaInVillousAdenoma" }, { - "@id": "bts:LymphNode(s)Retroperitoneal" + "@id": "bts:UndifferentiatedSarcoma" }, { - "@id": "bts:LymphNode(s)Scalene" + "@id": "bts:PapillaryThyroidCarcinoma" }, { - "@id": "bts:LymphNode(s)Splenic" + "@id": "bts:RenalCellAdenocarcinoma" }, { - "@id": "bts:LymphNode(s)Subclavicular" + "@id": "bts:HodgkinLymphoma;NOS" }, { - "@id": "bts:LymphNode(s)Submandibular" + "@id": "bts:MalignantHistiocytosis" }, { - "@id": "bts:LymphNode(s)Supraclavicular" + "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:LymphNodes(s)Mediastinal" + "@id": "bts:SolidPseudopapillaryTumorOfOvary" }, { - "@id": "bts:Mandible" + "@id": "bts:AstrocyticGlioma;HistologicallyLow-Grade;MostCompatibleWithPilocyticAstrocytoma" }, { - "@id": "bts:Maxilla" + "@id": "bts:InflammatoryMyofibroblasticTumorWithAnAssociatedOdontogenicKeratocyst" }, { - "@id": "bts:MediastinalSoftTissue" + "@id": "bts:Myofibromatosis" }, { - "@id": "bts:Mediastinum" + "@id": "bts:SmallRoundBlueCellTumor" }, { - "@id": "bts:Mesentery" + "@id": "bts:Meningioma;Atypical;CNSWHOGrade2" }, { - "@id": "bts:Mesothelium" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;AdamantinomatousCraniopharyngioma;Craniopharyngioma" }, { - "@id": "bts:MiddleFinger" + "@id": "bts:PilocyticAstrocytoma" }, { - "@id": "bts:Mitochondria" + "@id": "bts:LobularAndDuctalCarcinoma" }, { - "@id": "bts:Muscle" + "@id": "bts:Desmoplastic/NodularMedulloblastoma(HistologicallyDefined);CNSWHOGrade4" }, { - "@id": "bts:Nails" + "@id": "bts:MalignantPeripheralNerveSheathTumorWithRhabdomyoblasticDifferentiation" }, { - "@id": "bts:NasalCavity" + "@id": "bts:TumorCells;Malignant;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:NasalSoftTissue" + "@id": "bts:MalignantTumor" }, { - 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"rdfs:subClassOf": [ + "@id": "bts:MyeloidLeukemiaAssociatedWithDownSyndrome" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:MeningealMelanomatosis" + }, { - "@id": "bts:10-Deacetyltaxol" + "@id": "bts:NeuroepithelialTumorWithGlioneuronal-LikeFeatures" }, { - "@id": "bts:11CTopotecan" + "@id": "bts:SquamousCellCarcinoma;LargeCell;Nonkeratinizing;NOS" }, { - "@id": "bts:11D10AluGelAnti-IdiotypeMonoclonalAntibody" + "@id": "bts:Meningiomatosis;NOS" }, { - "@id": "bts:12-Allyldeoxoartemisinin" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:13-Deoxydoxorubicin" + "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:14CBMS-275183" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:17beta-HydroxysteroidDehydrogenaseType5InhibitorASP9521" + "@id": "bts:CNSEmbryonalTumor;NOS" }, { - "@id": "bts:2-Deoxy-D-glucose" + "@id": "bts:FavorAnaplasticEpendymoma" }, { - "@id": "bts:2-Ethylhydrazide" + "@id": "bts:DiffuseGlioma" }, { - "@id": "bts:2-Fluoroadenine" + "@id": "bts:AdamantinomatousCraniopharyngioma(CNSWHOGrade1)" }, { - "@id": "bts:2-Fluorofucose-containingSGN-2FF" + "@id": "bts:Medulloblastoma;ClassicVariant;WHOGrade4" }, { - "@id": "bts:2-Hydroxyestradiol" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:2-Hydroxyestrone" + "@id": "bts:GlioneuronalTumorWithFocalIncreasedAtypia" }, { - "@id": "bts:2-HydroxyflutamideDepot" + "@id": "bts:HighGradeNeuroepithelialTumor" }, { - "@id": "bts:2-HydroxyoleicAcid" + "@id": "bts:SquamousCellCarcinoma;SmallCell;Nonkeratinizing" }, { - "@id": "bts:2-Methoxyestradiol" + "@id": "bts:MixedPhenotypeAcuteLeukemiaWithT(V;11q23);MLLRearranged" }, { - "@id": "bts:2-MethoxyestradiolNanocrystalColloidalDispersion" + "@id": "bts:AcuteMyeloidLeukemia;MinimalDifferentiation" }, { - "@id": "bts:2-Methoxyestrone" + "@id": "bts:FibrillaryAstrocytoma" }, { - "@id": "bts:2-O;3-ODesulfatedHeparin" + "@id": "bts:Chordoma;NOS" }, { - "@id": "bts:2;6-Diaminopurine" + "@id": "bts:UndifferentiatedLeukemia" }, { - "@id": "bts:2;6-Dimethoxyquinone" + "@id": "bts:Myofibroma" }, { - "@id": "bts:2'-F-ara-deoxyuridine" + "@id": "bts:Neoplasm;Malignant" }, { - "@id": "bts:3'-C-ethynylcytidine" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS;Low-GradeGlioma" }, { - "@id": "bts:3'-dAPhosphoramidateNUC-7738" + "@id": "bts:InvasiveDuctalCarcinoma" }, { - "@id": "bts:4-Nitroestrone3-MethylEther" + "@id": "bts:SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:4-Thio-2-deoxycytidine" + "@id": "bts:EmbryonalRhabdomyosarcomaWithAnaplasticFeatures" }, { - "@id": "bts:4'-Iodo-4'-Deoxydoxorubicin" + "@id": "bts:High-GradeNeuroepithelialTumor" }, { - "@id": "bts:5-Aza-4'-thio-2'-deoxycytidine" + "@id": "bts:LowGradeGlioneuronalTumor" }, { - "@id": "bts:5-Fluoro-2-Deoxycytidine" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatasesIsoform3InhibitorACT-PFK-158" + "@id": "bts:AcuteMyeloidLeukemiaWithoutMaturation" }, { - "@id": "bts:7-Cyanoquinocarcinol" + "@id": "bts:AdenocarcinomaWithMixedSubtypes" }, { - "@id": "bts:7-Ethyl-10-Hydroxycamptothecin" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHyperdiploidy" }, { - "@id": "bts:7-Hydroxystaurosporine" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS" }, { - "@id": "bts:8-Azaguanine" + "@id": "bts:Hemangiosarcoma" }, { - "@id": "bts:9-Ethyl6-Mercaptopurine" + "@id": "bts:Paraganglioma;NOS" }, { - "@id": "bts:9H-Purine-6Thio-98D" + "@id": "bts:Medulloblastoma;Nodular/DesmoplasticWithAnaplastic/LargeCellFeatures;Non-WNT/Non-SHH;WHOGrade4" }, { - "@id": "bts:A2AReceptorAntagonistEOS100850" + "@id": "bts:SignetRingCellCarcinoma" }, { - "@id": "bts:Abagovomab" + "@id": "bts:SpindleCellMelanoma;NOS" }, { - "@id": "bts:Abarelix" + "@id": "bts:LobularAdenocarcinoma" }, { - "@id": "bts:Abemaciclib" + "@id": "bts:UndiagnosedSpindleCellTumor" }, { - "@id": "bts:AbemaciclibMesylate" + "@id": "bts:PilocyticAstrocytoma;WHOGrade1;KIAA1549-BRAFFusion" }, { - "@id": "bts:Abexinostat" + "@id": "bts:Meningioma" }, { - "@id": "bts:AbexinostatTosylate" + "@id": "bts:HepatosplenicT-CellLymphoma;PrecursorCellLymphoblasticLeukemia;NOS" }, { - "@id": "bts:Abiraterone" + "@id": "bts:MesenchymalChondrosarcoma" }, { - "@id": "bts:AbirateroneAcetate" + "@id": "bts:AnaplasticGanglioglioma" }, { - "@id": "bts:Abituzumab" + "@id": "bts:Osteosarcoma;NOS" }, { - "@id": "bts:AcaiBerryJuice" + "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:Acalabrutinib" + "@id": "bts:EpendymomaWHOGrade3" }, { - "@id": "bts:Acalisib" + "@id": "bts:LungAdenocarcinoma;NOS" }, { - "@id": "bts:Aceglatone" + "@id": "bts:LymphoproliferativeDisorder;NOS" }, { - "@id": "bts:Acetylcysteine" + "@id": "bts:AtypicalLymphoidInfiltrate" }, { - "@id": "bts:Acitretin" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:Acivicin" + "@id": "bts:GenitalRhabdomyoma" }, { - "@id": "bts:AclacinomycinB" + "@id": "bts:ChondroblasticOsteosarcoma" }, { - "@id": "bts:Aclarubicin" + "@id": "bts:Neuroepithelioma;NOS" }, { - "@id": "bts:Acodazole" + "@id": "bts:MalignantEpithelioidAndMyxoidNeoplasm" }, { - "@id": "bts:AcodazoleHydrochloride" + "@id": "bts:Pancreatoblastoma" }, { - "@id": "bts:AcolbifeneHydrochloride" + "@id": "bts:Nephroblastoma(WilmsTumor)" }, { - "@id": "bts:Acridine" + "@id": "bts:MalignantGlioma" }, { - "@id": "bts:AcridineCarboxamide" + "@id": "bts:EwingSarcoma" }, { - "@id": "bts:Acronine" + "@id": "bts:AtypicalSmoothMuscleNeoplasm" }, { - "@id": "bts:ActiniumAc225Lintuzumab" + "@id": "bts:AcuteMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:ActiniumAc225-FPI-1434" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:ActiniumAc-225Anti-PSMAMonoclonalAntibodyJ591" + "@id": "bts:EpithelialTumor;Benign" }, { - "@id": "bts:ActinomycinC2" + "@id": "bts:FavorTeratoma" }, { - "@id": "bts:ActinomycinC3" + "@id": "bts:MalignantNeoplasmOfProstate" }, { - "@id": "bts:ActinomycinF1" + "@id": "bts:Non-ClearCellRenalCellCarcinoma" }, { - "@id": "bts:ActivinType2BReceptorFcFusionProteinSTM434" + "@id": "bts:Meningioma;NOS;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" }, { - "@id": "bts:AcyclicNucleosidePhosphonateProdrugABI-1968" + "@id": "bts:MelanoticSchwannoma;Other" }, { - "@id": "bts:Ad-RTS-hIL-12" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;WNT-Activated" }, { - "@id": "bts:AdagloxadSimolenin" + "@id": "bts:CarcinosarcomaNOS" }, { - "@id": "bts:Adavosertib" + "@id": "bts:Plasmacytoma;Extramedullary" }, { - "@id": "bts:Adecatumumab" + "@id": "bts:InfantileFibrosarcoma" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistAZD4635" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistCS3005" + "@id": "bts:CNSPrimativeNeuroectodermalTumor(PNET)" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistNIR178" + "@id": "bts:Infiltratingductcarcinoma;NOS" }, { - "@id": "bts:AdenosineA2AReceptorAntagonist/Phosphodiesterase10APBF-999" + "@id": "bts:PrecursorB-CellLymphoblasticLeukemia" }, { - "@id": "bts:AdenosineA2A/A2BReceptorAntagonistAB928" + "@id": "bts:SquamousCellCarcinomaInSitu;NOS" }, { - "@id": "bts:AdenosineA2BReceptorAntagonistPBF-1129" + "@id": "bts:AcuteMyeloidLeukemia;T(16;16)(P13;Q11)" }, { - "@id": "bts:Adenovector-transducedAP1903-inducibleMyD88/CD40-expressingAutologousPSMA-specificProstateCancerVaccineBPX-201" + "@id": "bts:PapillaryTransitionalCellCarcinoma" }, { - "@id": "bts:AdenoviralBrachyuryVaccineETBX-051" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:AdenoviralCancerVaccinePF-06936308" + "@id": "bts:Low-GradeGlioneuronal;NeuronalTumor" }, { - "@id": "bts:AdenoviralMUC1VaccineETBX-061" + "@id": "bts:CombinedSmallCell-Adenocarcinoma" }, { - "@id": "bts:AdenoviralPSAVaccineETBX-071" + "@id": "bts:HepatocellularCarcinoma;NOS" }, { - "@id": "bts:AdenoviralTransducedhIL-12-expressingAutologousDendriticCellsINXN-3001PlusActivatorLigandINXN-1001" + "@id": "bts:SpindleCellCarcinoma;NOS" }, { - "@id": "bts:AdenoviralTumor-specificNeoantigenPrimingVaccineGAd-209-FSP" + "@id": "bts:Carcinoma;DiffuseType" }, { - "@id": "bts:AdenoviralTumor-specificNeoantigenPrimingVaccineGRT-C901" + "@id": "bts:LentiginousMelanocyticNevus" }, { - "@id": "bts:Adenovirus5/F35-HumanGuanylylCyclaseC-PADRE" + "@id": "bts:Glioma;Malignant;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" }, { - "@id": "bts:AdenovirusSerotype26-expressingHPV16VaccineJNJ-63682918" + "@id": "bts:SolitaryFibrousTumor;NOS" }, { - "@id": "bts:AdenovirusSerotype26-expressingHPV18VaccineJNJ-63682931" + "@id": "bts:Glioma;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:Adenovirus-expressingTLR5/TLR5AgonistNanoformulationM-VM3" + "@id": "bts:GranulosaCellTumor;Malignant" }, { - "@id": "bts:Adenovirus-mediatedHumanInterleukin-12INXN-2001PlusActivatorLigandINXN-1001" + "@id": "bts:Ganglioneuroma;MaturingType;FavorableHistology" }, { - "@id": "bts:Aderbasib" + "@id": "bts:InvasiveLobularCarcinoma" }, { - "@id": "bts:ADH-1" + "@id": "bts:Ganglioglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:AE37Peptide/GM-CSFVaccine" + "@id": "bts:BlandMyofibroblasticProliferationWithAssociatedFloridLymphoplasmacyticInflammation" }, { - "@id": "bts:AEE788" + "@id": "bts:Medulloblastoma" }, { - "@id": "bts:AerosolGemcitabine" + "@id": "bts:Hepatoblastoma" }, { - "@id": "bts:AerosolizedAldesleukin" + "@id": "bts:LowGradeGlial/GlioneuronalTumor" }, { - "@id": "bts:AerosolizedLiposomalRubitecan" + "@id": "bts:AtypicalTeratoidRhabdoidTumor;CNSWHOGrade4" }, { - "@id": "bts:Afatinib" + "@id": "bts:Oligoastrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:AfatinibDimaleate" + "@id": "bts:DiffuseGlioma;FavorHighGrade" }, { - "@id": "bts:Afimoxifene" + "@id": "bts:ReactiveConnectiveTissue" }, { - "@id": "bts:Afuresertib" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Mutant" }, { - "@id": "bts:AgatolimodSodium" + "@id": "bts:TumorCells;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Agerafenib" + "@id": "bts:Glioma;Malignant;MalignantPeripheralNerveSheathTumor;NOS" }, { - "@id": "bts:AglatimageneBesadenovec" + "@id": "bts:Melanoma;NOS" }, { - "@id": "bts:AgonisticAnti-CD40MonoclonalAntibodyADC-1013" + "@id": "bts:MalignantMelanocyticNeoplasm" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyINCAGN01949" + "@id": "bts:ChronicMyelogenousLeukemia;BCR/ABLPositive" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyMEDI6469" + "@id": "bts:VascularLesion;ConsistentWithHemangioma" }, { - "@id": "bts:AKR1C3-activatedProdrugOBI-3424" + "@id": "bts:SmallCellNeuroendocrineCarcinoma" }, { - "@id": "bts:AKT1/2InhibitorBAY1125976" + "@id": "bts:MedullaryCarcinoma" }, { - "@id": "bts:AKTInhibitorARQ092" + "@id": "bts:AnaplasticAstrocytoma;IDH-Wildtype;Glioblastoma;IDHWildtype" }, { - "@id": "bts:AktInhibitorLY2780301" + "@id": "bts:Rhabdomyosarcoma;EmbryonalSubtype" }, { - "@id": "bts:AktInhibitorMK2206" + "@id": "bts:MedulloblastomaByMorphology;NON-WNTByImmunohistochemistry" }, { - "@id": "bts:AktInhibitorSR13668" + "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;High-GradeGlioma" }, { - "@id": "bts:Akt/ERKInhibitorONC201" + "@id": "bts:Ganglioglioma;NOS" }, { - "@id": "bts:AlacizumabPegol" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:Alanosine" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Albumin-bindingCisplatinProdrugBTP-114" + "@id": "bts:AngiomatoidFibrousHistiocytoma" }, { - "@id": "bts:Aldesleukin" + "@id": "bts:MicropapillaryCarcinoma;NOS" }, { - "@id": "bts:Aldoxorubicin" + "@id": "bts:InfiltratingLobularCarcinoma;NOS" }, { - "@id": "bts:Alectinib" + "@id": "bts:GastrointestinalStromalTumor" }, { - "@id": "bts:Alefacept" + "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;Group4" }, { - "@id": "bts:Alemtuzumab" + "@id": "bts:Craniopharyngioma" }, { - "@id": "bts:Alestramustine" + "@id": "bts:Sertoli-LeydigCellTumor;IntermediateDifferentiation;WithHeterologousElements" }, { - "@id": "bts:AlflutinibMesylate" + "@id": "bts:AcuteMyeloidLeukemia;Inv(16)(P13;Q22)" }, { - "@id": "bts:Algenpantucel-L" + "@id": "bts:Subependymoma" }, { - "@id": "bts:Alisertib" + "@id": "bts:GliomatosisCerebri" }, { - "@id": "bts:Alitretinoin" + "@id": "bts:Infiltratinglobularcarcinoma;NOS" }, { - "@id": "bts:ALKInhibitor" + "@id": "bts:Schwannoma;NOS" }, { - "@id": "bts:ALKInhibitorASP3026" + "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:ALKInhibitorPLB1003" + "@id": "bts:Dysplasia" }, { - "@id": "bts:ALKInhibitorRO5424802" + "@id": "bts:MalignantRhabdoidTumor" }, { - "@id": "bts:ALKInhibitorTAE684" + "@id": "bts:BlueNevus;Malignant" }, { - "@id": "bts:ALKInhibitorWX-0593" + "@id": "bts:Adenocarcinoma;PancreatobiliaryType" }, { - "@id": "bts:ALK-2InhibitorTP-0184" + "@id": "bts:Ependymoma;NOS;ChoroidPlexusTumors;ChoroidPlexusPapilloma" }, { - "@id": "bts:ALK-FAKInhibitorCEP-37440" + "@id": "bts:Ganglioneuroblastoma;NodularType" }, { - "@id": "bts:ALK/c-MetInhibitorTQ-B3139" + "@id": "bts:GranulosaCellTumor;Juvenile" }, { - "@id": "bts:ALK/FAK/Pyk2InhibitorCT-707" + "@id": "bts:JuvenileGranulosaCellTumor" }, { - "@id": "bts:ALK/ROS1/MetInhibitorTQ-B3101" + "@id": "bts:ChronicMyeloidLeukemia;BCR-ABL1-Positive" }, { - "@id": "bts:ALK/TRKInhibitorTSR-011" + "@id": "bts:Head&NeckSquamousCellCarcinoma" }, { - "@id": "bts:Alkotinib" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:AllodepletedTCellImmunotherapeuticATIR101" + "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:AllogeneicAnti-BCMACAR-transducedT-cellsALLO-715" + "@id": "bts:Ganglioglioma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:AllogeneicAnti-BCMA-CART-cellsPBCAR269A" + "@id": "bts:IntraductalPapillaryMucinousNeoplasmWithAnAssociatedInvasiveCarcinoma" }, { - "@id": "bts:AllogeneicAnti-BCMA/CS1BispecificCAR-TCells" + "@id": "bts:AdrenalCorticalAdenoma;NOS" }, { - "@id": "bts:AllogeneicAnti-CD19CART-cellsALLO-501A" + "@id": "bts:Adenocarcinoma;PancreatobiliaryType;Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:AllogeneicAnti-CD19UniversalCAR-TCellsCTA101" + "@id": "bts:Lipoblastomatosis" }, { - "@id": "bts:AllogeneicAnti-CD19-CART-cellsPBCAR0191" + "@id": "bts:CentralNeurocytoma;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:AllogeneicAnti-CD20CART-cellsLUCAR-20S" + "@id": "bts:Control" }, { - "@id": "bts:AllogeneicAnti-CD20-CART-cellsPBCAR20A" + "@id": "bts:HHV8PositiveDiffuseLargeB-CellLymphoma" }, { - "@id": "bts:AllogeneicCD22-specificUniversalCAR-expressingT-lymphocytesUCART22" + "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma;PleomorphicXanthoastrocytoma" }, { - "@id": "bts:AllogeneicCD3-CD19-CD57+NKG2C+NKCellsFATE-NK100" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;Group4" }, { - "@id": "bts:AllogeneicCD56-positiveCD3-negativeNaturalKillerCellsCYNK-001" + "@id": "bts:LargeCellMedulloblastoma" }, { - "@id": "bts:AllogeneicCD8+Leukemia-associatedAntigensSpecificTCellsNEXI-001" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(12;21)(P13;Q22);TEL-AML1(ETV6-RUNX1)" }, { - "@id": "bts:AllogeneicCellularVaccine1650-G" + "@id": "bts:CentralOsteosarcoma;NOS" }, { - "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-BCMATCellsCTX120" + "@id": "bts:Chordoma" }, { - "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-CD70CAR-TCellsCTX130" + "@id": "bts:PilocyticAstrocytoma;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:AllogeneicCS1-specificUniversalCAR-expressingT-lymphocytesUCARTCS1A" + "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:AllogeneicGM-CSF-secretingBreastCancerVaccineSV-BR-1-GM" + "@id": "bts:DermatofibrosarcomaProtuberans;Fibrosarcomatous" }, { - "@id": "bts:AllogeneicGM-CSF-secretingLethallyIrradiatedProstateCancerVaccine" + "@id": "bts:NeuroendocrineCarcinoma;NOS" }, { - "@id": "bts:AllogeneicGM-CSF-secretingLethallyIrradiatedWholeMelanomaCellVaccine" + "@id": "bts:Glioma;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:AllogeneicGM-CSF-secretingTumorVaccinePANC10.05pcDNA-1/GM-Neo" + "@id": "bts:Oligodendroglioma;NOS" }, { - "@id": "bts:AllogeneicGM-CSF-secretingTumorVaccinePANC6.03pcDNA-1/GM-Neo" + "@id": "bts:AcuteMonoblasticLeukemia" }, { - "@id": "bts:AllogeneicIL13-Zetakine/HyTK-Expressing-GlucocorticoidResistantCytotoxicTLymphocytesGRm13Z40-2" + "@id": "bts:Glioma;Malignant;Low-GradeGlioma;PolymorphousLow-GradeNeuroepithelialTumorOfTheYoung" }, { - "@id": "bts:AllogeneicIrradiatedMelanomaCellVaccineCSF470" + "@id": "bts:Neoplasm" }, { - "@id": "bts:AllogeneicLargeMultivalentImmunogenMelanomaVaccineLP2307" + "@id": "bts:Medulloepithelioma;NOS" }, { - "@id": "bts:AllogeneicMelanomaVaccineAGI-101H" + "@id": "bts:Oligodendroglioma;NOS;High-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:AllogeneicNaturalKillerCellLineMG4101" + "@id": "bts:NotReported" }, { - "@id": "bts:AllogeneicNaturalKillerCellLineNK-92" + "@id": "bts:AggressiveFibromatosis" }, { - "@id": "bts:AllogeneicPlasmacytoidDendriticCellsExpressingLungTumorAntigensPDC*lung01" + "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges" }, { - "@id": "bts:AllogeneicRenalCellCarcinomaVaccineMGN1601" + "@id": "bts:LangerhansCellHistiocytosis;Disseminated" }, { - "@id": "bts:AllogeneicThird-partySuicideGene-transducedAnti-HLA-DPB1*0401CD4+T-cellsCTL19" + "@id": "bts:Glioma;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:AllostericErbBInhibitorBDTX-189" + "@id": "bts:Oligoastrocytoma;NOS" }, { - "@id": "bts:Allovectin-7" + "@id": "bts:UndifferentiatedNasopharyngealCarcinoma" }, { - "@id": "bts:Almurtide" + "@id": "bts:SmallCellCarcinoma;NOS" }, { - "@id": "bts:Alobresib" + "@id": "bts:Chordoma;NOS;Chordoma(IncludingPoorlyDifferentiatedChordoma);Other" }, { - "@id": "bts:Alofanib" + "@id": "bts:Mesothelioma;Biphasic;Malignant;BLymphoblasticLeukemia/Lymphoma;NOS" }, { - "@id": "bts:Alpelisib" + "@id": "bts:CentralNeurocytoma;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:AlphaGalactosylceramide" + "@id": "bts:UndifferentiatedSmallRoundCellSarcoma" }, { - "@id": "bts:AlphaVBeta1InhibitorATN-161" + "@id": "bts:Rhabdomyoma;NOS" }, { - "@id": "bts:AlphaVBeta8AntagonistPF-06940434" + "@id": "bts:Glioblastoma;IDHWildtype" }, { - "@id": "bts:Alpha-FolateReceptor-targetingThymidylateSynthaseInhibitorONX-0801" + "@id": "bts:Neoplasm;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:Alpha-GalAGI-134" + "@id": "bts:TherapyRelatedMyeloidNeoplasm" }, { - "@id": "bts:Alpha-lactalbumin-derivedSyntheticPeptide-lipidComplexAlpha1H" + "@id": "bts:AcuteMyeloidLeukemia;NOS" }, { - "@id": "bts:Alpha-ThioguanineDeoxyriboside" + "@id": "bts:MalignantTumor;SpindleCellType;CNSSarcoma;CNSSarcoma;NOSOrNEC" }, { - "@id": "bts:Alpha-tocopheryloxyaceticAcid" + "@id": "bts:LeydigCellTumor;Benign" }, { - "@id": "bts:Alsevalimab" + "@id": "bts:MyelodysplasticSyndromeWithSingleLineageDysplasia" }, { - "@id": "bts:Altiratinib" + "@id": "bts:Germinoma;CNSGermCellTumors;CNSGerminoma" }, { - "@id": "bts:Altretamine" + "@id": "bts:GlialTumor" }, { - "@id": "bts:Alvespimycin" + "@id": "bts:SynovialSarcoma;SpindleCell" }, { - "@id": "bts:AlvespimycinHydrochloride" + "@id": "bts:SpindleCellMelanoma;TypeB" }, { - "@id": "bts:Alvocidib" + "@id": "bts:FamilialAdenomatousPolyposis" }, { - "@id": "bts:AlvocidibHydrochloride" + "@id": "bts:GiantCellGlioblastoma" }, { - "@id": "bts:AlvocidibProdrugTP-1287" + "@id": "bts:Teratocarcinoma" }, { - "@id": "bts:Amatuximab" + "@id": "bts:Adenoma;NOS" }, { - "@id": "bts:Ambamustine" + "@id": "bts:AcralLentiginousMelanoma;Malignant" }, { - "@id": "bts:Ambazone" + "@id": "bts:CarcinomaNOS" }, { - "@id": "bts:Amblyomin-X" + "@id": "bts:PapillaryCarcinoma;NOS" }, { - "@id": "bts:Amcasertib" + "@id": "bts:PoorlyDifferentiatedNeuroblastoma" }, { - "@id": "bts:Ametantrone" + "@id": "bts:SolidPseudopapillaryNeoplasmOfPancreas" }, { - "@id": "bts:Amifostine" + "@id": "bts:NasopharyngealCarcinoma" }, { - "@id": "bts:AminoAcidInjection" + "@id": "bts:AdenocarcinomaInAdenomatousPolyposisColi" }, { - "@id": "bts:Aminocamptothecin" + "@id": "bts:Leiomyoma;NOS" }, { - "@id": "bts:AminocamptothecinColloidalDispersion" + "@id": "bts:EmbryonalRhabdomyosarcoma;NOS" }, { - "@id": "bts:AminoflavoneProdrugAFP464" + "@id": "bts:ChoroidPlexusPapilloma;NOS;OtherCNSEmbryonalTumors;Pineoblastoma" }, { - "@id": "bts:Aminopterin" + "@id": "bts:TumorCells;Benign" }, { - "@id": "bts:AminopterinSodium" + "@id": "bts:MarginalZoneB-CellLymphoma;NOS" }, { - "@id": "bts:Amivantamab" + "@id": "bts:TumorCells;Malignant;Other;PinealParenchymalTumorOfIntermediateDifferentiation" }, { - "@id": "bts:AmolimogeneBepiplasmid" + "@id": "bts:Pinealoma" }, { - "@id": "bts:AmonafideL-Malate" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;INI1/SMARCB1-Altered;WHOGrade4" }, { - "@id": "bts:Amrubicin" + "@id": "bts:MetastaticSignetRingCellCarcinoma" }, { - "@id": "bts:AmrubicinHydrochloride" + "@id": "bts:Astrocytoma" }, { - "@id": "bts:Amsacrine" + "@id": "bts:DesmoplasticInfantileAstrocytoma" }, { - "@id": "bts:AmsacrineLactate" + "@id": "bts:MalignantSarcomaWithDICER1Mutation;FavorPrimaryIntracranialSarcoma;DICER1Mutant" }, { - "@id": "bts:Amsilarotene" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHypodiploidy" }, { - "@id": "bts:Amustaline" + "@id": "bts:ColonAdenocarcinoma" }, { - "@id": "bts:AmustalineDihydrochloride" + "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:Amuvatinib" + "@id": "bts:ProliferativeDermalLesionInCongenitalNevus" }, { - "@id": "bts:AmuvatinibHydrochloride" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;WNT-Activated" }, { - "@id": "bts:Anakinra" + "@id": "bts:ArteriovenousMalformation" }, { - "@id": "bts:Anastrozole" + "@id": "bts:Glioma;Malignant" }, { - "@id": "bts:Anaxirone" + "@id": "bts:AcinarCellCarcinoma" }, { - "@id": "bts:Ancitabine" + "@id": "bts:SpinalEpendymoma;HistologicallyLowGrade(CNSWHOGrade2)" }, { - "@id": "bts:AncitabineHydrochloride" + "@id": "bts:Leukemia;NOS" }, { - "@id": "bts:Andecaliximab" + "@id": "bts:Hemangioblastoma;Other" }, { - "@id": "bts:AndrogenAntagonistAPC-100" + "@id": "bts:High-GradeSerousCarcinoma" }, { - "@id": "bts:AndrogenReceptorAntagonistBAY1161116" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group3" }, { - "@id": "bts:AndrogenReceptorAntagonistSHR3680" + "@id": "bts:SchwannianStromaPoorPeripheralNeuroblasticTumor;ConsistentWithNeuroblastoma" }, { - "@id": "bts:AndrogenReceptorAntagonistTAS3681" + "@id": "bts:AcuteMyeloidLeukemiaWithMutatedCEBPA" }, { - "@id": "bts:AndrogenReceptorAntagonistTRC253" + "@id": "bts:ParostealOsteosarcoma" }, { - "@id": "bts:AndrogenReceptorAntisenseOligonucleotideAZD5312" + "@id": "bts:EpithelioidMesothelioma;Malignant" }, { - "@id": "bts:AndrogenReceptorAntisenseOligonucleotideEZN-4176" + "@id": "bts:Meningioma;NOS" }, { - "@id": "bts:AndrogenReceptorDegraderARV-110" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:AndrogenReceptorDegraderCC-94676" + "@id": "bts:ChoriocarcinomaCombinedWithOtherGermCellElements" }, { - "@id": "bts:AndrogenReceptorDownregulatorAZD3514" + "@id": "bts:BrainTumor;LowGradeGlioma" }, { - "@id": "bts:AndrogenReceptorInhibitorEPI-7386" + "@id": "bts:Ganglioglioma;NOS;DiffuseAstrocytoma;MYB-OrMYBL1-Altered;Low-GradeGlioma" }, { - "@id": "bts:AndrogenReceptorLigand-bindingDomain-encodingPlasmidDNAVaccineMVI-118" + "@id": "bts:EmbryonalTumorWithMultilayeredRosettesC19MC-Altered" }, { - "@id": "bts:AndrogenReceptor/GlucocorticoidReceptorAntagonistCB-03-10" + "@id": "bts:Neoplasm;Malignant;UncertainWhetherPrimaryOrMetastatic" }, { - "@id": "bts:Andrographolide" + "@id": "bts:DesmoplasticSmallRoundCellTumor" }, { - "@id": "bts:AndrostaneSteroidHE3235" + "@id": "bts:EmbryonalRhabdomyosarcoma" }, { - "@id": "bts:AnetumabRavtansine" + "@id": "bts:LangerhansCellHistiocytosis" }, { - "@id": "bts:Ang2/VEGF-BindingPeptides-AntibodyFusionProteinCVX-241" + "@id": "bts:GlialNeoplasmShowingHigh-GradeFeatures" }, { - "@id": "bts:AngiogenesisInhibitorGT-111" + "@id": "bts:Oligodendroglioma" }, { - "@id": "bts:AngiogenesisInhibitorJI-101" + "@id": "bts:MalignantMelanoma;NOS" }, { - "@id": "bts:Angiogenesis/HeparanaseInhibitorPG545" + "@id": "bts:MyxopapillaryEpendymoma;Ependymoma" }, { - "@id": "bts:Angiopoietin-2-specificFusionProteinPF-04856884" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:AnhydrousEnol-oxaloacetate" + "@id": "bts:Neoplasm;Malignant;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Anhydrovinblastine" + "@id": "bts:Adenocarcinoma" }, { - "@id": "bts:AnilineMustard" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(9;22)(Q34;Q11.2);BCR-ABL1" }, { - "@id": "bts:AnlotinibHydrochloride" + "@id": "bts:Hemangioendothelioma;Malignant" }, { - "@id": "bts:Annamycin" + "@id": "bts:ChoroidPlexusNeoplasm" }, { - "@id": "bts:AnnamycinLiposomal" + "@id": "bts:Craniopharyngioma;Adamantinomatous;AdamantinomatousCraniopharyngioma" }, { - "@id": "bts:AnnonaceousAcetogenins" + "@id": "bts:Pinealoblastoma" }, { - "@id": "bts:AnsamitomicinP-3" + "@id": "bts:LargeCellMedulloblastoma;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Anthramycin" + "@id": "bts:SpindleCellSarcoma" }, { - "@id": "bts:Anthrapyrazole" + "@id": "bts:Gliosarcoma" }, { - "@id": "bts:Antic-KITAntibody-drugConjugateLOP628" + "@id": "bts:CentralPrimitiveNeuroectodermalTumor" }, { - "@id": "bts:Anti-5T4Antibody-drugConjugateASN004" + "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade3" }, { - "@id": "bts:Anti-5T4Antibody-DrugConjugatePF-06263507" + "@id": "bts:Astrocytoma;Benign" }, { - "@id": "bts:Anti-5T4Antibody-drugConjugateSYD1875" + "@id": "bts:PleomorphicRhabdomyosarcoma;AdultType" }, { - "@id": "bts:Anti-A33MonoclonalAntibodyKRN330" + "@id": "bts:MyeloidSarcoma" }, { - "@id": "bts:Anti-A5B1IntegrinMonoclonalAntibodyPF-04605412" + "@id": "bts:Glioma;Malignant;Other;OtherLow-GradeB-CellLymphomasOfTheCNS" }, { - "@id": "bts:Anti-ACTR/4-1BB/CD3zeta-ViralVector-transducedAutologousT-LymphocytesACTR087" + "@id": "bts:Ganglioneuroma" }, { - "@id": "bts:Anti-AG7AntibodyDrugConjugateAbGn-107" + "@id": "bts:Neoplasm;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Anti-AGS-16MonoclonalAntibodyAGS-16M18" + "@id": "bts:ClearCellRenalCellCarcinoma" }, { - "@id": "bts:Anti-AGS-5Antibody-DrugConjugateASG-5ME" + "@id": "bts:Ependymoma;NOS;AtypicalMeningioma" }, { - "@id": "bts:Anti-AGS-8MonoclonalAntibodyAGS-8M4" + "@id": "bts:Oligodendroglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:Anti-alphaBCMA/Anti-alphaCD3T-cellEngagingBispecificAntibodyTNB-383B" + "@id": "bts:MalignantPeripheralNerveSheathTumor" }, { - "@id": "bts:Anti-alpha5beta1IntegrinAntibodyMINT1526A" + "@id": "bts:Glioma;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" }, { - "@id": "bts:Anti-ANG2MonoclonalAntibodyMEDI-3617" + "@id": "bts:Sertoli-LeydigCellTumorOfIntermediateDifferentiation;NOS" }, { - "@id": "bts:Anti-angiopoietinMonoclonalAntibodyAMG780" + "@id": "bts:DesmoplasticNodularMedulloblastoma" }, { - "@id": "bts:Anti-APRILMonoclonalAntibodyBION-1301" + "@id": "bts:PapillaryMicrocarcinoma" }, { - "@id": "bts:Anti-AXLFusionProteinAVB-S6-500" + "@id": "bts:Craniopharyngioma;NOS" }, { - "@id": "bts:Anti-AXL/PBDAntibody-drugConjugateADCT-601" + "@id": "bts:LowGradeGlialNeoplasm" }, { - "@id": "bts:Anti-B7-H3AntibodyDS-5573a" + "@id": "bts:Leiomyosarcoma;NOS" }, { - "@id": "bts:Anti-B7-H3/DXdAntibody-drugConjugateDS-7300a" + "@id": "bts:FollicularAdenocarcinoma;NOS" + } + ], + "sms:displayName": "Individual Primary Diagnosis", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualPrimarySite", + "@type": "rdfs:Class", + "rdfs:comment": "Primary site in the body associated with the primary diagnosis.", + "rdfs:label": "IndividualPrimarySite", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Abdomen" }, { - "@id": "bts:Anti-B7-H4MonoclonalAntibodyFPA150" + "@id": "bts:AbdominalWall" }, { - "@id": "bts:Anti-B7H3Antibody-drugConjugateMGC018" + "@id": "bts:Acetabulum" }, { - "@id": "bts:Anti-BCMAAntibodySEA-BCMA" + "@id": "bts:AdjacentOrgan" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateAMG224" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateCC-99712" + "@id": "bts:Anal/Perianal" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateGSK2857916" + "@id": "bts:AnkleJoint" }, { - "@id": "bts:Anti-BCMASparXProteinPlusBCMA-directedAnti-TAAGARCT-cellsCART-ddBCMA" + "@id": "bts:AnteriorSkullBase" }, { - "@id": "bts:Anti-BCMA/Anti-CD3BispecificAntibodyREGN5459" + "@id": "bts:Anus" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG420" + "@id": "bts:Appendix" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG701" + "@id": "bts:AsciticFluid" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyREGN5458" + "@id": "bts:Axilla" }, { - "@id": "bts:Anti-BCMA/PBDADCMEDI2228" + "@id": "bts:AxillaryNodes" }, { - "@id": "bts:Anti-BTLAMonoclonalAntibodyTAB004" + "@id": "bts:Bladder" }, { - "@id": "bts:Anti-BTN3AAgonisticMonoclonalAntibodyICT01" + "@id": "bts:Bladder/Prostate" }, { - "@id": "bts:Anti-c-fmsMonoclonalAntibodyAMG820" + "@id": "bts:Bone" }, { - "@id": "bts:Anti-c-KITMonoclonalAntibodyCDX0158" + "@id": "bts:BoneFace" }, { - "@id": "bts:Anti-c-MetAntibody-drugConjugateHTI-1066" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:Anti-c-MetAntibody-drugConjugateTR1801" + "@id": "bts:BoneorBoneMarrow" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyABT-700" + "@id": "bts:Brain" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyARGX-111" + "@id": "bts:Brain/Leptomeninges" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyHLX55" + "@id": "bts:Breast" }, { - "@id": "bts:Anti-c-METMonoclonalAntibodyLY2875358" + "@id": "bts:Bronchus" }, { - "@id": "bts:Anti-C-metMonoclonalAntibodySAIT301" + "@id": "bts:Buttock" }, { - "@id": "bts:Anti-C4.4aAntibody-DrugConjugateBAY1129980" + "@id": "bts:Calcaneum" }, { - "@id": "bts:Anti-C5aRMonoclonalAntibodyIPH5401" + "@id": "bts:CarpalBone" }, { - 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"@id": "bts:ATRInhibitorRP-3500" + "@id": "bts:KneeSkin" }, { - "@id": "bts:ATRKinaseInhibitorBAY1895344" + "@id": "bts:Labium" }, { - "@id": "bts:ATRKinaseInhibitorM1774" + "@id": "bts:LabiumMajus" }, { - "@id": "bts:ATRKinaseInhibitorM6620" + "@id": "bts:LabiumMinus" }, { - "@id": "bts:ATRKinaseInhibitorVX-803" + "@id": "bts:LacrimalGland" }, { - "@id": "bts:AtrasentanHydrochloride" + "@id": "bts:LacrimalSac" }, { - "@id": "bts:AttenuatedListeriamonocytogenesCRS-100" + "@id": "bts:LargeIntestine" }, { - "@id": "bts:AttenuatedLiveListeriaEncodingHPV16E7VaccineADXS11-001" + "@id": "bts:LaryngealCartilage" }, { - "@id": "bts:AttenuatedMeaslesVirusEncodingSCDTransgeneTMV-018" + "@id": "bts:Larynx" }, { - "@id": "bts:Atuveciclib" + "@id": "bts:LateralVentricle" }, { - "@id": "bts:Audencel" + "@id": "bts:LateralWalloftheBladder" }, { - "@id": "bts:Auranofin" + "@id": "bts:LateralWalloftheNasopharynx" }, { - "@id": "bts:AuroraAKinaseInhibitorLY3295668" + "@id": "bts:LateralWalloftheOropharynx" }, { - "@id": "bts:AuroraAKinaseInhibitorLY3295668Erbumine" + "@id": "bts:LateralWallofthePharynx" }, { - "@id": "bts:AuroraAKinaseInhibitorMK5108" + "@id": "bts:LegSkin" }, { - "@id": "bts:AuroraAKinaseInhibitorTAS-119" + "@id": "bts:Lens" }, { - "@id": "bts:AuroraAKinase/TyrosineKinaseInhibitorENMD-2076" + "@id": "bts:LesserCurvatureoftheStomach" }, { - "@id": "bts:AuroraBSerine/ThreonineKinaseInhibitorTAK-901" + "@id": "bts:Ligament" }, { - "@id": "bts:AuroraB/CKinaseInhibitorGSK1070916A" + "@id": "bts:LingualTonsil" }, { - "@id": "bts:AurorakinaseA/BinhibitorTT-00420" + "@id": "bts:LingulaoftheLung" }, { - "@id": "bts:AuroraKinaseInhibitorAMG900" + "@id": "bts:Lip" }, { - "@id": "bts:AuroraKinaseInhibitorBI811283" + "@id": "bts:Liver" }, { - "@id": "bts:AuroraKinaseInhibitorMLN8054" + "@id": "bts:LobuleoftheAuricle" }, { - "@id": "bts:AuroraKinaseInhibitorPF-03814735" + "@id": "bts:LowerExtremity" }, { - "@id": "bts:AuroraKinaseInhibitorSNS-314" + "@id": "bts:LowerGingiva" }, { - "@id": "bts:AuroraKinaseInhibitorTTP607" + "@id": "bts:LowerLobeoftheLung" }, { - "@id": "bts:AuroraKinase/VEGFR2InhibitorCYC116" + "@id": "bts:LowerThirdoftheEsophagus" }, { - "@id": "bts:AutologousACTR-CD16-CD28-expressingT-lymphocytesACTR707" + "@id": "bts:Lower-InnerQuadrantoftheBreast" }, { - "@id": "bts:AutologousAFPSpecificTCellReceptorTransducedTCellsC-TCR055" + "@id": "bts:Lower-OuterQuadrantoftheBreast" }, { - "@id": "bts:AutologousAnti-BCMACART-cellsPHE885" + "@id": "bts:LumbarNerve" }, { - "@id": "bts:AutologousAnti-BCMACAR-transducedT-cellsKITE-585" + "@id": "bts:LumbosacralPlexus" }, { - "@id": "bts:AutologousAnti-BCMACD8+CART-cellsDescartes-11" + "@id": "bts:Lung" }, { - "@id": "bts:AutologousAnti-BCMA-CARExpressingStemMemoryT-cellsP-BCMA-101" + "@id": "bts:LymphNode" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingCD4+/CD8+T-lymphocytesJCARH125" + "@id": "bts:LymphNodeofInguinalRegionorLeg" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingMemoryT-lymphocytesbb21217" + "@id": "bts:Lymphatic" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingT-cellsC-CAR088" + "@id": "bts:MainBronchus" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingT-cellsCT053" + "@id": "bts:MaleGenitalia" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-expressingCD4+/CD8+T-lymphocytesFCARH143" + "@id": "bts:MalePrepuce" }, { - "@id": "bts:AutologousAnti-CD123CAR-TCells" + "@id": "bts:MammaryGland" }, { - "@id": "bts:AutologousAnti-CD19CART-cells19(T2)28z1xx" + "@id": "bts:Mandible" }, { - "@id": "bts:AutologousAnti-CD19CART-cellsIM19" + "@id": "bts:MasseterMuscle" }, { - "@id": "bts:AutologousAnti-CD19CARTCR-zeta/4-1BB-transducedT-lymphocyteshuCART19" + "@id": "bts:Maxilla" }, { - "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-expressingT-cellsCNCT19" + "@id": "bts:MaxillarySinus" }, { - "@id": "bts:AutologousAnti-CD19CAR-CD28T-cellsET019002" + "@id": "bts:MeckelDiverticulum" }, { - "@id": "bts:AutologousAnti-CD19CAR-CD3zeta-4-1BB-expressingT-cellsPZ01" + "@id": "bts:MedianNerve" }, { - "@id": "bts:AutologousAnti-CD19CAR-expressingT-lymphocytesCLIC-1901" + "@id": "bts:MediastinalLymphNode" }, { - "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsAUTO1" + "@id": "bts:Mediastinum" }, { - "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsSJCAR19" + "@id": "bts:MedullaOblongata" }, { - "@id": "bts:AutologousAnti-CD19T-cellReceptorTcellsET190L1" + "@id": "bts:MeibomianGland" }, { - "@id": "bts:AutologousAnti-CD19TAC-TcellsTAC01-CD19" + "@id": "bts:Meninges" }, { - "@id": "bts:AutologousAnti-CD19/CD20BispecificNanobody-basedCAR-Tcells" + "@id": "bts:MeniscusLateralis" }, { - "@id": "bts:AutologousAnti-CD19/CD22CART-cellsAUTO3" + "@id": "bts:MeniscusMedialis" }, { - "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressingCD4+/CD8+CentralMemoryT-lymphocytesJCAR014" + "@id": "bts:Mentum" }, { - "@id": "bts:AutologousAnti-CD19CAR-HER2t/CD22CAR-EGFRt-expressingT-cells" + "@id": "bts:Mesencephalon" }, { - "@id": "bts:AutologousAnti-CD20CARTransducedCD4/CD8EnrichedT-cellsMB-CART20.1" + "@id": "bts:MesentericArtery" }, { - "@id": "bts:AutologousAnti-CD22CAR-4-1BB-TCRz-transducedT-lymphocytesCART22-65s" + "@id": "bts:MesentericLymphNode" }, { - "@id": "bts:AutologousAnti-EGFRCAR-transducedCXCR5-modifiedT-lymphocytes" + "@id": "bts:Mesentery" }, { - "@id": "bts:AutologousAnti-FLT3CARTCellsAMG553" + "@id": "bts:MesonephricDuct" }, { - "@id": "bts:AutologousAnti-HLA-A*02/AFPTCRm-expressingT-cellsET140202" + "@id": "bts:Mesonephros" }, { - "@id": "bts:AutologousAnti-HLA-A*0201/AFPCART-cellsET1402L1" + "@id": "bts:Mesovarium" }, { - "@id": "bts:AutologousAnti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressingT-cellsAIC100" + "@id": "bts:MetacarpalBone" }, { - "@id": "bts:AutologousAnti-kappaLightChainCAR-CD28-expressingT-lymphocytes" + "@id": "bts:MetatarsalBone" }, { - "@id": "bts:AutologousAnti-NY-ESO-1/LAGE-1TCR-transducedc259TLymphocytesGSK3377794" + "@id": "bts:MiddleCranialFossa" }, { - "@id": "bts:AutologousAnti-PD-1Antibody-activatedTumor-infiltratingLymphocytes" + "@id": "bts:MiddleEar" }, { - "@id": "bts:AutologousAnti-PSMACAR-TCellsP-PSMA-101" + "@id": "bts:MiddleLobeoftheRightLung" }, { - "@id": "bts:AutologousAXL-targetedCART-cellsCCT301-38" + "@id": "bts:MiddleThirdoftheEsophagus" }, { - "@id": "bts:AutologousB-cell/Monocyte-presentingHER2/neuAntigenVaccineBVAC-B" + "@id": "bts:MinorSalivaryGland" }, { - "@id": "bts:AutologousBCMA-targetedCARTCellsCC-98633" + "@id": "bts:MonsPubis" }, { - "@id": "bts:AutologousBCMA-targetedCARTCellsLCAR-B4822M" + "@id": "bts:MucosaoftheLip" }, { - "@id": "bts:AutologousBi-epitopeBCMA-targetedCART-cellsJNJ-68284528" + "@id": "bts:MucosaoftheLowerLip" }, { - "@id": "bts:AutologousBispecificBCMA/CD19-targetedCAR-TCellsGC012F" + "@id": "bts:MucosaoftheUpperLip" }, { - "@id": "bts:AutologousBispecificCD19/CD22-targetedCAR-TCellsGC022" + "@id": "bts:Muscle" }, { - "@id": "bts:AutologousBoneMarrow-derivedCD34/CXCR4-positiveStemCellsAMR-001" + "@id": "bts:MusculusLatissimusDorsi" }, { - "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3005" + "@id": "bts:Myocardium" }, { - "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3006" + "@id": "bts:Myometrium" }, { - "@id": "bts:AutologousCD123-4SCAR-expressingT-cells4SCAR123" + "@id": "bts:NasalBone" }, { - "@id": "bts:AutologousCD19CAR-expressingCD4+/CD8+T-cellsMB-CART19.1" + "@id": "bts:NasalCartilage" }, { - "@id": "bts:AutologousCD19-targetedCARTCellsCC-97540" + "@id": "bts:NasalCavity" }, { - "@id": "bts:AutologousCD19-targetedCARTCellsJWCAR029" + "@id": "bts:NasalSeptum" }, { - "@id": "bts:AutologousCD19-targetedCAR-TCellsGC007F" + "@id": "bts:NasalTurbinate" }, { - "@id": "bts:AutologousCD19/PD-1BispecificCAR-TCells" + "@id": "bts:NasolacrimalDuct" }, { - "@id": "bts:AutologousCD20-4SCAR-expressingT-cells4SCAR20" + "@id": "bts:Nasopharynx" }, { - "@id": "bts:AutologousCD22-4SCAR-expressingT-cells4SCAR22" + "@id": "bts:NeckSkin" }, { - "@id": "bts:AutologousCD38-4SCAR-expressingT-cells4SCAR38" + "@id": "bts:Nerve" }, { - "@id": "bts:AutologousClonalNeoantigenTCellsATL001" + "@id": "bts:NervousSystem" }, { - "@id": "bts:AutologousCRISPR-editedAnti-CD19CARTCellsXYF19" + "@id": "bts:Nipple" }, { - "@id": "bts:AutologousDeepIL-15PrimedT-cellsTRQ15-01" + "@id": "bts:Nose" }, { - "@id": "bts:AutologousDendriticCellVaccineACT2001" + "@id": "bts:Nostril" }, { - "@id": "bts:AutologousDendriticCell-basedImmunotherapeuticAV0113" + "@id": "bts:ObturatorLymphNode" }, { - "@id": "bts:AutologousFRa-4SCAR-expressingT-cells4SCAR-FRa" + "@id": "bts:ObturatorNerve" }, { - "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032CD8alphaTCells" + "@id": "bts:OccipitalBone" }, { - "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032TCells" + "@id": "bts:OccipitalLobe" }, { - "@id": "bts:AutologousHeat-ShockProtein70PeptideVaccineAG-858" + "@id": "bts:OccipitalLymphNode" }, { - "@id": "bts:AutologousHPV16E7-specificHLA-A*02:01-restrictedTCRGeneEngineeredLymphocytesKITE-439" + "@id": "bts:OculomotorMuscle" }, { - "@id": "bts:AutologousLMP1/LMP2/EBNA1-specificHLA-A02:01/24:02/11:01-restrictedTCR-expressingT-lymphocytesYT-E001" + "@id": "bts:OculomotorNerve" }, { - "@id": "bts:AutologousMAGE-A3/A6-specificTCRGene-engineeredLymphocytesKITE-718" + "@id": "bts:OlfactoryNerve" }, { - "@id": "bts:AutologousMCPyV-specificHLA-A02-restrictedTCR-transducedCD4+andCD8+T-cellsFH-MCVA2TCR" + "@id": "bts:Omentum" }, { - "@id": "bts:AutologousMesenchymalStemCellsApceth101" + "@id": "bts:OpticChiasm" }, { - "@id": "bts:AutologousMesothelin-specificHumanmRNACAR-transfectedPBMCsMCY-M11" + "@id": "bts:OpticNerve" }, { - "@id": "bts:AutologousMonocyte-derivedLysate-pulsedDendriticCellVaccinePV-001-DC" + "@id": "bts:OpticTract" }, { - "@id": "bts:AutologousMulti-lineagePotentialCells" + "@id": "bts:OralCavity" }, { - "@id": "bts:AutologousNectin-4/FAP-targetedCAR-TCells" + "@id": "bts:Orbit" }, { - "@id": "bts:AutologousNKG2DCART-cellsCYAD-02" + "@id": "bts:Oropharynx" }, { - "@id": "bts:AutologousNKG2DCAR-CD3zeta-DAP10-expressingT-LymphocytesCYAD-01" + "@id": "bts:OtherSpecifiedPartsofPancreas" }, { - "@id": "bts:AutologousPancreaticAdenocarcinomaLysateandmRNA-loadedDendriticCellVaccine" + "@id": "bts:OuterCanthus" }, { - "@id": "bts:AutologousPeripheralBloodLymphocytesfromIbrutinib-treatedChronicLymphocyticLeukemiaPatientsIOV-2001" + "@id": "bts:Ovary" }, { - "@id": "bts:AutologousProstateCancerAntigen-expressingDendriticCellVaccineBPX-101" + "@id": "bts:Palate" }, { - "@id": "bts:AutologousProstateStemCellAntigen-specificCARTCellsBPX-601" + "@id": "bts:PalatineTonsil" }, { - "@id": "bts:AutologousRapamycin-resistantTh1/Tc1CellsRAPA-201" + "@id": "bts:PalmarFascia" }, { - "@id": "bts:AutologousROR2-targetedCART-cellsCCT301-59" + "@id": "bts:Pancreas" }, { - "@id": "bts:AutologousTAAs-loadedAutologousDendriticCellsAV-GBM-1" + "@id": "bts:PancreaticDuct" }, { - "@id": "bts:AutologousTCR-engineeredT-cellsIMA201" + "@id": "bts:PancreaticLymphNode" }, { - "@id": "bts:AutologousTCR-engineeredT-cellsIMA202" + "@id": "bts:ParaaorticLymphNode" }, { - "@id": "bts:AutologousTCR-engineeredT-cellsIMA203" + "@id": "bts:Paraganglion" }, { - "@id": "bts:AutologousTCRm-expressingT-cellsET140203" + "@id": "bts:Parametrium" }, { - "@id": "bts:AutologousTetravalentDendriticCellVaccineMIDRIX4-LUNG" + "@id": "bts:ParanasalSinus" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-144" + "@id": "bts:ParasympatheticNervousSystem" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-145" + "@id": "bts:ParathyroidGland" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-145-S1" + "@id": "bts:ParatrachealLymphNode" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesMDA-TIL" + "@id": "bts:ParietalBone" }, { - "@id": "bts:AutologousUniversalCAR-expressingT-lymphocytesUniCAR02-T" + "@id": "bts:ParietalLobe" }, { - "@id": "bts:Avadomide" + "@id": "bts:ParietalPleura" }, { - "@id": "bts:AvadomideHydrochloride" + "@id": "bts:ParotidDuct" }, { - "@id": "bts:Avapritinib" + "@id": "bts:ParotidGland" }, { - "@id": "bts:Avdoralimab" + "@id": "bts:ParotidGlandLymphNode" }, { - "@id": "bts:Avelumab" + "@id": "bts:Patella" }, { - "@id": "bts:Aviscumine" + "@id": "bts:PectoralLymphNode" }, { - "@id": "bts:AvitinibMaleate" + "@id": "bts:PectoralisMajor" }, { - "@id": "bts:AxalimogeneFilolisbac" + "@id": "bts:PelvicLymphNode" }, { - "@id": "bts:Axatilimab" + "@id": "bts:Pelvis" }, { - "@id": "bts:AxicabtageneCiloleucel" + "@id": "bts:Penis" }, { - "@id": "bts:Axitinib" + "@id": "bts:Pericardium" }, { - "@id": "bts:AXLInhibitorDS-1205c" + "@id": "bts:Perineum" }, { - "@id": "bts:AXLInhibitorSLC-391" + "@id": "bts:PeripheralNerve" }, { - "@id": "bts:AXLReceptorTyrosineKinase/cMETInhibitorBPI-9016M" + "@id": "bts:PeritonealCavity" }, { - "@id": "bts:AXL/FLT3/VEGFR2InhibitorKC1036" + "@id": "bts:Peritoneum" }, { - "@id": "bts:Axl/MerInhibitorINCB081776" + "@id": "bts:PharyngealTonsil" }, { - "@id": "bts:Axl/MerInhibitorPF-07265807" + "@id": "bts:Pharynx" }, { - "@id": "bts:Azacitidine" + "@id": "bts:PiaMater" }, { - "@id": "bts:Azapicyl" + "@id": "bts:PinealGland" }, { - "@id": "bts:Azaribine" + "@id": "bts:PituitaryGland" }, { - "@id": "bts:Azaserine" + "@id": "bts:Placenta" }, { - "@id": "bts:Azathioprine" + "@id": "bts:PlantarFascia" }, { - "@id": "bts:Azimexon" + "@id": "bts:PlantarRegion" }, { - "@id": "bts:AzintuxizumabVedotin" + "@id": "bts:Pleura" }, { - "@id": "bts:AziridinylbenzoquinoneRH1" + "@id": "bts:PonsVarolii" }, { - "@id": "bts:Azotomycin" + "@id": "bts:PoplitealLymphNode" }, { - "@id": "bts:Azurin:50-77CellPenetratingPeptidep28" + "@id": "bts:PortalLymphNode" }, { - "@id": "bts:B-Raf/VEGFR-2InhibitorRAF265" + "@id": "bts:PostcricoidRegion" }, { - "@id": "bts:BabaodanCapsule" + "@id": "bts:PosteriorCranialFossa" }, { - "@id": "bts:BacillusCalmette-GuerinSubstrainConnaughtLiveAntigen" + "@id": "bts:PosteriorMediastinum" }, { - "@id": "bts:Bactobolin" + "@id": "bts:PosteriorWalloftheBladder" }, { - "@id": "bts:Bafetinib" + "@id": "bts:PosteriorWalloftheHypopharynx" }, { - "@id": "bts:Balixafortide" + "@id": "bts:PosteriorWalloftheNasopharynx" }, { - "@id": "bts:Balstilimab" + "@id": "bts:PosteriorWalloftheOropharynx" }, { - "@id": "bts:Baltaleucel-T" + "@id": "bts:PosteriorWallofthePharynx" }, { - "@id": "bts:Banoxantrone" + "@id": "bts:PreauricularLymphNode" }, { - "@id": "bts:Barasertib" + "@id": "bts:ProstateGland" }, { - "@id": "bts:Bardoxolone" + "@id": "bts:ProstaticUtricle" }, { - "@id": "bts:BardoxoloneMethyl" + "@id": "bts:PsoasMuscle" }, { - "@id": "bts:Baricitinib" + "@id": "bts:PubicBone" }, { - "@id": "bts:Batabulin" + "@id": "bts:PubicSymphysis" }, { - "@id": "bts:BatabulinSodium" + "@id": "bts:Pulmonary" }, { - "@id": "bts:Batimastat" + "@id": "bts:PulmonaryHilarLymphNode" }, { - "@id": "bts:Bavituximab" + "@id": "bts:Putamen" }, { - "@id": "bts:Bazedoxifene" + "@id": "bts:Pylorus" }, { - "@id": "bts:Bazlitoran" + "@id": "bts:PyriformSinus" }, { - "@id": "bts:BC-819Plasmid/PolyethylenimineComplex" + "@id": "bts:QuadricepsMuscleoftheThigh" }, { - "@id": "bts:BCGSolution" + "@id": "bts:RadialArtery" }, { - "@id": "bts:BCGTokyo-172StrainSolution" + "@id": "bts:RadialNerve" }, { - "@id": "bts:BCGVaccine" + "@id": "bts:RadiusBone" }, { - "@id": "bts:Bcl-2InhibitorAPG2575" + "@id": "bts:RathkePouch" }, { - "@id": "bts:Bcl-2InhibitorBCL201" + "@id": "bts:RectosigmoidColon" }, { - "@id": "bts:Bcl-2InhibitorBGB-11417" + "@id": "bts:RectosigmoidRegion" }, { - "@id": "bts:Bcl-2InhibitorLP-108" + "@id": "bts:Rectum" }, { - "@id": "bts:Bcl-2InhibitorS65487" + "@id": "bts:RectusAbdominis" }, { - "@id": "bts:Bcl-XsAdenovirusVaccine" + "@id": "bts:Renal" }, { - "@id": "bts:BCMAxCD3T-cellEngagingAntibodyCC-93269" + "@id": "bts:RenalArtery" }, { - "@id": "bts:BCMA-CD19CompoundCARTCells" + "@id": "bts:RenalCalyx" }, { - "@id": "bts:BCMA/CD3eTri-specificT-cellActivatingConstructHPN217" + "@id": "bts:RenalPelvis" }, { - "@id": "bts:Bcr-AblKinaseInhibitorK0706" + "@id": "bts:ReticuloendothelialSystem" }, { - "@id": "bts:Bcr-AblKinaseInhibitorPF-114" + "@id": "bts:Retina" }, { - "@id": "bts:BCR-ABL/KIT/AKT/ERKInhibitorHQP1351" + "@id": "bts:RetromolarTrigone" }, { - "@id": "bts:Beauvericin" + "@id": "bts:RetroperitonealLymphNode" }, { - "@id": "bts:Becatecarin" + "@id": "bts:Retroperitoneum" }, { - "@id": "bts:Belagenpumatucel-L" + "@id": "bts:RetropharyngealLymphNode" }, { - "@id": "bts:BelantamabMafodotin" + "@id": "bts:RoundLigamentoftheUterus" }, { - "@id": "bts:Belapectin" + "@id": "bts:SacralBone" }, { - "@id": "bts:Belimumab" + "@id": "bts:SacralLymphNode" }, { - "@id": "bts:Belinostat" + "@id": "bts:SacralNerve" }, { - "@id": "bts:BelotecanHydrochloride" + "@id": "bts:SacralPlexus" }, { - 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"@id": "bts:Bicalutamide" + "@id": "bts:SubmandibularGland" }, { - "@id": "bts:Bimiralisib" + "@id": "bts:SubmandibularLymphNode" }, { - "@id": "bts:Binetrakin" + "@id": "bts:SuperiorVenaCava" }, { - "@id": "bts:Binimetinib" + "@id": "bts:SuperiorWalloftheNasopharynx" }, { - "@id": "bts:BintrafuspAlfa" + "@id": "bts:Supraclavicular" }, { - "@id": "bts:Birabresib" + "@id": "bts:SupraclavicularLymphNode" }, { - "@id": "bts:Birinapant" + "@id": "bts:Supraglottis" }, { - "@id": "bts:Bis(choline)tetrathiomolybdate" + "@id": "bts:SuprasellarRegion" }, { - "@id": "bts:Bisantrene" + "@id": "bts:SupratentorialBrain" }, { - "@id": "bts:BisantreneHydrochloride" + "@id": "bts:SympatheticNervousSystem" }, { - "@id": "bts:Bisnafide" + "@id": "bts:SynovialBursa" }, { - "@id": "bts:BisnafideDimesylate" + "@id": "bts:SynovialFluid" }, { - "@id": "bts:BispecificAntibody2B1" + "@id": "bts:TailofthePancreas" }, { - "@id": "bts:BispecificAntibodyAGEN1223" + "@id": "bts:TarsalBone" }, { - "@id": "bts:BispecificAntibodyAMG509" + "@id": "bts:TemporalBone" }, { - 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"@id": "bts:Brentuximab" + "@id": "bts:Urachus" }, { - "@id": "bts:BrentuximabVedotin" + "@id": "bts:Ureter" }, { - "@id": "bts:Brequinar" + "@id": "bts:UretericOrifice" }, { - "@id": "bts:BrequinarSodium" + "@id": "bts:UreteropelvicJunction" }, { - "@id": "bts:BriciclibSodium" + "@id": "bts:Urethra" }, { - "@id": "bts:Brigatinib" + "@id": "bts:UterineGland" }, { - "@id": "bts:Brilanestrant" + "@id": "bts:UterineLigament" }, { - "@id": "bts:BrimonidineTartrateNanoemulsionOCU-300" + "@id": "bts:Uterus" }, { - "@id": "bts:Brivanib" + "@id": "bts:Uvea" }, { - "@id": "bts:BrivanibAlaninate" + "@id": "bts:Uvula" }, { - "@id": "bts:Brivudine" + "@id": "bts:Vagina" }, { - "@id": "bts:BrivudinePhosphoramidate" + "@id": "bts:VaginalFornix" }, { - "@id": "bts:Broad-SpectrumHumanPapillomavirusVaccineV505" + "@id": "bts:VagusNerve" }, { - "@id": "bts:BroccoliSprout/BroccoliSeedExtractSupplement" + "@id": "bts:Vallecula" }, { - "@id": "bts:Bromacrylide" + "@id": "bts:VasDeferens" }, { - "@id": "bts:BromebricAcid" + "@id": "bts:Vein" }, { - "@id": "bts:BromocriptineMesylate" + "@id": "bts:VenaCava" }, { - "@id": "bts:Brontictuzumab" + "@id": "bts:Vermis" }, { - "@id": "bts:BrostacillinHydrochloride" + "@id": "bts:Vertebra" }, { - "@id": "bts:Brostallicin" + "@id": "bts:VertebralColumn" }, { - "@id": "bts:Broxuridine" + "@id": "bts:VisceralPleura" }, { - "@id": "bts:BruceanolA" + "@id": "bts:VocalCord" }, { - "@id": "bts:BruceanolB" + "@id": "bts:Vulva" }, { - "@id": "bts:BruceanolC" + "@id": "bts:Waldeyer'sTonsillarRing" }, { - "@id": "bts:BruceanolD" + "@id": "bts:WallofthePharynx" }, { - "@id": "bts:BruceanolE" + "@id": "bts:WristJoint" }, { - "@id": "bts:BruceanolF" - }, + "@id": "bts:WristSkin" + } + ], + "sms:displayName": "Individual Site of Origin", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualTumorSubtype", + "@type": "rdfs:Class", + "rdfs:comment": "The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.", + "rdfs:label": "IndividualTumorSubtype", + "rdfs:subClassOf": [ { - 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"@id": "bts:C-MetInhibitorJNJ-38877605" + "@id": "bts:N3c" }, { - "@id": "bts:C-MetInhibitorMK2461" + "@id": "bts:N4" }, { - "@id": "bts:C-MetInhibitorMK8033" + "@id": "bts:NX" }, { - "@id": "bts:C-MetInhibitorMSC2156119J" + "@id": "bts:Unknown" }, { - "@id": "bts:C-mybAntisenseOligonucleotideG4460" + "@id": "bts:NotReported" + } + ], + "sms:displayName": "Individual Tumor Lymph Node Stage", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualKnownMetastasisSites", + "@type": "rdfs:Class", + "rdfs:comment": "The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.", + "rdfs:label": "IndividualKnownMetastasisSites", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:4thventricle" }, { - "@id": "bts:C-rafAntisenseOligonucleotideISIS5132" + "@id": "bts:Abdomen" }, { - "@id": "bts:C-VISABikDD:Liposome" + "@id": "bts:Abdominalmass" }, { - "@id": "bts:C/EBPBetaAntagonistST101" + "@id": "bts:AbdominalWall" }, { - "@id": "bts:CAB-ROR2-ADCBA3021" + "@id": "bts:Acetabulum" }, { - "@id": "bts:Cabazitaxel" + "@id": "bts:Adenoid" }, { - "@id": "bts:Cabiralizumab" + "@id": "bts:Adipose" }, { - "@id": "bts:Cabozantinib" + "@id": "bts:Adrenal" }, { - "@id": "bts:CabozantinibS-malate" + "@id": "bts:Adrenalmass" }, { - "@id": "bts:Cactinomycin" + "@id": "bts:AlveolarRidge" }, { - "@id": "bts:CaffeicAcidPhenethylEster" + "@id": "bts:AmnioticFluid" }, { - "@id": "bts:CAIXInhibitorDTP348" + "@id": "bts:AmpullaOfVater" }, { - "@id": "bts:CAIXInhibitorSLC-0111" + "@id": "bts:AnalSphincter" }, { - "@id": "bts:CalaspargasePegol-mknl" + "@id": "bts:Ankle" }, { - "@id": "bts:Calcitriol" + "@id": "bts:Anorectum" }, { - "@id": "bts:CalciumRelease-activatedChannelInhibitorCM4620" + "@id": "bts:AntecubitalFossa" }, { - "@id": "bts:CalciumRelease-activatedChannelsInhibitorRP4010" + "@id": "bts:Antrum" }, { - "@id": "bts:CalciumSaccharate" + "@id": "bts:Anus" }, { - "@id": "bts:Calculusbovis/Moschus/Olibanum/MyrrhaCapsule" + "@id": "bts:Aorta" }, { - "@id": "bts:CalicheamicinGamma1I" + "@id": "bts:AorticBody" }, { - "@id": "bts:CamidanlumabTesirine" + "@id": "bts:Appendix" }, { - "@id": "bts:Camptothecin" + "@id": "bts:AqueousFluid" }, { - "@id": "bts:CamptothecinAnalogueTLC388" + "@id": "bts:Arm" }, { - "@id": "bts:CamptothecinGlycoconjugateBAY38-3441" + "@id": "bts:Artery" }, { - "@id": "bts:CamptothecinSodium" + "@id": "bts:AscendingColon" }, { - "@id": "bts:Camptothecin-20(S)-O-PropionateHydrate" + "@id": "bts:AscendingColonHepaticFlexure" }, { - "@id": "bts:Camrelizumab" + "@id": "bts:AuditoryCanal" }, { - "@id": "bts:Camsirubicin" + "@id": "bts:AutonomicNervousSystem" }, { - "@id": "bts:Cancell" + "@id": "bts:Axilla" }, { - "@id": "bts:CancerPeptideVaccineS-588410" + "@id": "bts:Back" }, { - "@id": "bts:Canerpaturev" + "@id": "bts:Bilateral" }, { - "@id": "bts:CanertinibDihydrochloride" + "@id": "bts:BileDuct" }, { - "@id": "bts:Canfosfamide" + "@id": "bts:Bladder" }, { - "@id": "bts:CanfosfamideHydrochloride" + "@id": "bts:Blood" }, { - "@id": "bts:Cannabidiol" + "@id": "bts:BloodVessel" }, { - "@id": "bts:Cantrixil" + "@id": "bts:Bone" }, { - "@id": "bts:CantuzumabRavtansine" + "@id": "bts:Bonemarrow" }, { - "@id": "bts:Capecitabine" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:CapecitabineRapidlyDisintegratingTablet" + "@id": "bts:BoneMarrowmetastasis" }, { - "@id": "bts:Capivasertib" + "@id": "bts:Bowel" }, { - "@id": "bts:Capmatinib" + "@id": "bts:Brain" }, { - "@id": "bts:Captopril" + "@id": "bts:Brainstem" }, { - "@id": "bts:CART-CellsAMG119" + "@id": "bts:BrainStem" }, { - "@id": "bts:Caracemide" + "@id": "bts:Breast" }, { - "@id": "bts:Carbendazim" + "@id": "bts:BroadLigament" }, { - "@id": "bts:Carbetimer" + "@id": "bts:Bronchiole" }, { - "@id": "bts:Carbogen" + "@id": "bts:Bronchus" }, { - "@id": "bts:CarbonC14-pamiparib" + "@id": "bts:Brow" }, { - "@id": "bts:Carboplatin" + "@id": "bts:BuccalCavity" }, { - "@id": "bts:Carboquone" + "@id": "bts:BuccalMucosa" }, { - "@id": "bts:Carboxyamidotriazole" + "@id": "bts:Buttock" }, { - "@id": "bts:CarboxyamidotriazoleOrotate" + "@id": "bts:Calf" }, { - "@id": "bts:CarboxyphenylRetinamide" + "@id": "bts:Capillary" }, { - "@id": "bts:Carfilzomib" + "@id": "bts:Cardia" }, { - "@id": "bts:Caricotamide/Tretazicar" + "@id": "bts:Carina" }, { - "@id": "bts:Carlumab" + "@id": "bts:CarotidArtery" }, { - "@id": "bts:Carmofur" + "@id": "bts:CarotidBody" }, { - "@id": "bts:Carmustine" + "@id": "bts:Cartilage" }, { - "@id": "bts:CarmustineImplant" + "@id": "bts:Cecum" }, { - "@id": "bts:CarmustineinEthanol" + "@id": "bts:Cell-Line" }, { - "@id": "bts:CarmustineSustained-ReleaseImplantWafer" + "@id": "bts:CentralNervousSystem" }, { - "@id": "bts:Carotuximab" + "@id": "bts:Cerebellum" }, { - "@id": "bts:Carubicin" + "@id": "bts:CerebralCortex" }, { - "@id": "bts:CarubicinHydrochloride" + "@id": "bts:CerebrospinalFluid" }, { - "@id": "bts:Carzelesin" + "@id": "bts:Cerebrum" }, { - "@id": "bts:Carzinophilin" + "@id": "bts:Cervicalnode" }, { - "@id": "bts:CathelicidinLL-37" + "@id": "bts:CervicalSpine" }, { - "@id": "bts:CationicLiposome-EncapsulatedPaclitaxel" + "@id": "bts:Cervix" }, { - "@id": "bts:CationicPeptideCreamCypep-1" + "@id": "bts:Chest" }, { - "@id": "bts:Catumaxomab" + "@id": "bts:ChestWall" }, { - "@id": "bts:CBP/beta-cateninAntagonistPRI-724" + "@id": "bts:Chin" }, { - "@id": "bts:CBP/beta-cateninModulatorE7386" + "@id": "bts:Clavicle" }, { - "@id": "bts:CCR2AntagonistCCX872-B" + "@id": "bts:Clitoris" }, { - "@id": "bts:CCR2AntagonistPF-04136309" + "@id": "bts:Colon" }, { - "@id": "bts:CCR2/CCR5AntagonistBMS-813160" + "@id": "bts:Colon-MucosaOnly" }, { - "@id": "bts:CCR4InhibitorFLX475" + "@id": "bts:CommonDuct" }, { - "@id": "bts:CD11bAgonistGB1275" + "@id": "bts:Conjunctiva" }, { - "@id": "bts:CD123-CD33CompoundCARTCells" + "@id": "bts:ConnectiveTissue" }, { - "@id": "bts:CD123-specificTargetingModuleTM123" + "@id": "bts:Dermal" }, { - "@id": "bts:CD20-CD19CompoundCARTCells" + "@id": "bts:DescendingColon" }, { - "@id": "bts:CD28/ICOSAntagonistALPN-101" + "@id": "bts:Diaphragm" }, { - "@id": "bts:CD4-specificTelomerasePeptideVaccineUCPVax" + "@id": "bts:Distalfemur" }, { - "@id": "bts:CD40AgonistMonoclonalAntibodyCP-870;893" + "@id": "bts:Duodenum" }, { - "@id": "bts:CD40AgonisticMonoclonalAntibodyAPX005M" + "@id": "bts:Ear" }, { - "@id": "bts:CD44TargetedAgentSPL-108" + "@id": "bts:EarCanal" }, { - "@id": "bts:CD44v6-specificCART-cells" + "@id": "bts:Effusion" }, { - "@id": "bts:CD47AntagonistALX148" + "@id": "bts:Elbow" }, { - "@id": "bts:CD73InhibitorAB680" + "@id": "bts:EndocrineGland" }, { - "@id": "bts:CD73InhibitorLY3475070" + "@id": "bts:Epididymis" }, { - "@id": "bts:CD80-FcFusionProteinALPN-202" + "@id": "bts:EpiduralSpace" }, { - "@id": "bts:CD80-FcFusionProteinFPT155" + "@id": "bts:Esophageal;Distal" }, { - "@id": "bts:CDC7InhibitorTAK-931" + "@id": "bts:Esophageal;Mid" }, { - "@id": "bts:CDC7KinaseInhibitorBMS-863233" + "@id": "bts:Esophageal;Proximal" }, { - "@id": "bts:CDC7KinaseInhibitorLY3143921Hydrate" + "@id": "bts:EsophagogastricJunction" }, { - "@id": "bts:CDC7KinaseInhibitorNMS-1116354" + "@id": "bts:Esophagus" }, { - "@id": "bts:CDKInhibitorAT7519" + "@id": "bts:Esophagus-MucosaOnly" }, { - "@id": "bts:CDKInhibitorR547" + "@id": "bts:Eye" }, { - "@id": "bts:CDKInhibitorSNS-032" + "@id": "bts:FallopianTube" }, { - "@id": "bts:CDK/JAK2/FLT3InhibitorTG02Citrate" + "@id": "bts:FemoralArtery" }, { - "@id": "bts:CDK1InhibitorBEY1107" + "@id": "bts:FemoralVein" }, { - "@id": "bts:CDK1/2/4InhibitorAG-024322" + "@id": "bts:Femur" }, { - "@id": "bts:CDK2InhibitorPF-07104091" + "@id": "bts:Fibroblasts" }, { - "@id": "bts:CDK2/4/6/FLT3InhibitorFN-1501" + "@id": "bts:Fibula" }, { - "@id": "bts:CDK2/5/9InhibitorCYC065" + "@id": "bts:Finger" }, { - "@id": "bts:CDK4InhibitorP1446A-05" + "@id": "bts:FloorOfMouth" }, { - "@id": "bts:CDK4/6Inhibitor" + "@id": "bts:Fluid" }, { - "@id": "bts:CDK4/6InhibitorBPI-16350" + "@id": "bts:Foot" }, { - "@id": "bts:CDK4/6InhibitorCS3002" + "@id": "bts:Forearm" }, { - "@id": "bts:CDK4/6InhibitorFCN-437" + "@id": "bts:Forehead" }, { - "@id": "bts:CDK4/6InhibitorG1T38" + "@id": "bts:Foreskin" }, { - "@id": "bts:CDK4/6InhibitorHS-10342" + "@id": "bts:FrontalCortex" }, { - "@id": "bts:CDK4/6InhibitorSHR6390" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:CDK4/6InhibitorTQB3616" + "@id": "bts:FundusOfStomach" }, { - "@id": "bts:CDK7InhibitorCT7001" + "@id": "bts:Gallbladder" }, { - "@id": "bts:CDK7InhibitorSY-1365" + "@id": "bts:Ganglia" }, { - "@id": "bts:CDK7InhibitorSY-5609" + "@id": "bts:GastroesophagealJunction" }, { - "@id": "bts:CDK8/19InhibitorSEL120" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:CDK9InhibitorAZD4573" + "@id": "bts:Glottis" }, { - "@id": "bts:CEA-MUC-1-TRICOMVaccineCV301" + "@id": "bts:Groin" }, { - "@id": "bts:CEA-targetingAgentRG6123" + "@id": "bts:Gum" }, { - "@id": "bts:CEBPA-targetingsaRNAMTL-CEBPALiposome" + "@id": "bts:Hand" }, { - "@id": "bts:Cedazuridine" + "@id": "bts:HardPalate" }, { - "@id": "bts:Cedazuridine/AzacitidineCombinationAgentASTX030" + "@id": "bts:Head&Neck" }, { - "@id": "bts:Cedazuridine/DecitabineCombinationAgentASTX727" + "@id": "bts:Head-FaceOrNeck" }, { - "@id": "bts:Cedefingol" + "@id": "bts:Heart" }, { - "@id": "bts:Cediranib" + "@id": "bts:Hepatic" }, { - "@id": "bts:CediranibMaleate" + "@id": "bts:HepaticDuct" }, { - "@id": "bts:Celecoxib" + "@id": "bts:HepaticFlexure" }, { - "@id": "bts:CellCycleCheckpoint/DNARepairAntagonistIC83" + "@id": "bts:HepaticVein" }, { - "@id": "bts:Cemadotin" + "@id": "bts:Hip" }, { - "@id": "bts:CemadotinHydrochloride" + "@id": "bts:Hippocampus" }, { - "@id": "bts:Cemiplimab" + "@id": "bts:Humerus" }, { - "@id": "bts:Cenersen" + "@id": "bts:Hypopharynx" }, { - "@id": "bts:Cenisertib" + "@id": "bts:Ileum" }, { - "@id": "bts:CENP-EInhibitorGSK-923295" + "@id": "bts:Ilium" }, { - "@id": "bts:Ceralasertib" + "@id": "bts:IndexFinger" }, { - "@id": "bts:CeramideNanoliposome" + "@id": "bts:Ischium" }, { - "@id": "bts:Cerdulatinib" + "@id": "bts:IsletCells" }, { - "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-92480" + "@id": "bts:Jaw" }, { - "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-99282" + "@id": "bts:Jejunum" }, { - "@id": "bts:CereblonModulatorCC-90009" + "@id": "bts:Joint" }, { - "@id": "bts:CergutuzumabAmunaleukin" + "@id": "bts:Kidney" }, { - "@id": "bts:Ceritinib" + "@id": "bts:Knee" }, { - "@id": "bts:Cesalin" + "@id": "bts:L.DistalFemur" }, { - "@id": "bts:CEtKRASAntisenseOligonucleotideAZD4785" + "@id": "bts:L.Femur" }, { - "@id": "bts:Cetrelimab" + "@id": "bts:L.Kidney" }, { - "@id": "bts:Cetuximab" + "@id": "bts:L.Occipitalmass" }, { - "@id": "bts:CetuximabSarotalocan" + "@id": "bts:L.ProximalTibia" }, { - "@id": "bts:Cetuximab-IR700ConjugateRM-1929" + "@id": "bts:LacrimalGland" }, { - "@id": "bts:Cetuximab-loadedEthylcellulosePolymericNanoparticlesDecoratedwithOctreotide(SY)" + "@id": "bts:LargeBowel" }, { - "@id": "bts:Cevipabulin" + "@id": "bts:Laryngopharynx" }, { - "@id": "bts:CevipabulinFumarate" + "@id": "bts:Larynx" }, { - "@id": "bts:CevipabulinSuccinate" + "@id": "bts:LeftBonemarrow" }, { - 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"@id": "bts:CiclopiroxProdrugCPX-POM" + "@id": "bts:LymphNode(s)Occipital" }, { - "@id": "bts:CidanHerbalCapsule" + "@id": "bts:LymphNode(s)Paraaortic" }, { - "@id": "bts:Ciforadenant" + "@id": "bts:LymphNode(s)Parotid" }, { - "@id": "bts:Cilengitide" + "@id": "bts:LymphNode(s)Pelvic" }, { - "@id": "bts:CiltacabtageneAutoleucel" + "@id": "bts:LymphNode(s)Popliteal" }, { - "@id": "bts:Cimetidine" + "@id": "bts:LymphNode(s)Regional" }, { - "@id": "bts:CinacalcetHydrochloride" + "@id": "bts:LymphNode(s)Retroperitoneal" }, { - "@id": "bts:Cinobufagin" + "@id": "bts:LymphNode(s)Scalene" }, { - "@id": "bts:Cinobufotalin" + "@id": "bts:LymphNode(s)Splenic" }, { - "@id": "bts:CinrebafuspAlfa" + "@id": "bts:LymphNode(s)Subclavicular" }, { - "@id": "bts:Cintirorgon" + "@id": "bts:LymphNode(s)Submandibular" }, { - "@id": "bts:CintredekinBesudotox" + "@id": "bts:LymphNode(s)Supraclavicular" }, { - "@id": "bts:Cirmtuzumab" + "@id": "bts:LymphNodes(s)Mediastinal" }, { - "@id": "bts:Cis-UrocanicAcid" + "@id": "bts:Mandible" }, { - 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"@id": "bts:Epratuzumab-cys-tesirine" + "@id": "bts:Andecaliximab" }, { - "@id": "bts:ERalphaProteolysis-targetingChimeraProteinDegraderARV-471" + "@id": "bts:AndrogenAntagonistAPC-100" }, { - "@id": "bts:ERa36ModulatorIcaritin" + "@id": "bts:AndrogenReceptorAntagonistBAY1161116" }, { - "@id": "bts:ErastinAnaloguePRLX93936" + "@id": "bts:AndrogenReceptorAntagonistSHR3680" }, { - "@id": "bts:Erbulozole" + "@id": "bts:AndrogenReceptorAntagonistTAS3681" }, { - "@id": "bts:Erdafitinib" + "@id": "bts:AndrogenReceptorAntagonistTRC253" }, { - "@id": "bts:Eribulin" + "@id": "bts:AndrogenReceptorAntisenseOligonucleotideAZD5312" }, { - "@id": "bts:EribulinMesylate" + "@id": "bts:AndrogenReceptorAntisenseOligonucleotideEZN-4176" }, { - "@id": "bts:ERK1/2InhibitorASTX029" + "@id": "bts:AndrogenReceptorDegraderARV-110" }, { - "@id": "bts:ERKInhibitorCC-90003" + "@id": "bts:AndrogenReceptorDegraderCC-94676" }, { - "@id": "bts:ERKInhibitorGDC-0994" + "@id": "bts:AndrogenReceptorDownregulatorAZD3514" }, { - 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"@id": "bts:EtoposideToniribate" + "@id": "bts:Anti-APRILMonoclonalAntibodyBION-1301" }, { - "@id": "bts:Etoprine" + "@id": "bts:Anti-AXLFusionProteinAVB-S6-500" }, { - "@id": "bts:Etoricoxib" + "@id": "bts:Anti-AXL/PBDAntibody-drugConjugateADCT-601" }, { - "@id": "bts:Ets-familyTranscriptionFactorInhibitorTK216" + "@id": "bts:Anti-B7-H3AntibodyDS-5573a" }, { - "@id": "bts:Everolimus" + "@id": "bts:Anti-B7-H3/DXdAntibody-drugConjugateDS-7300a" }, { - "@id": "bts:EverolimusTabletsforOralSuspension" + "@id": "bts:Anti-B7-H4MonoclonalAntibodyFPA150" }, { - "@id": "bts:Evofosfamide" + "@id": "bts:Anti-B7H3Antibody-drugConjugateMGC018" }, { - "@id": "bts:ExVivo-expandedAutologousTCellsIMA101" + "@id": "bts:Anti-BCMAAntibodySEA-BCMA" }, { - "@id": "bts:ExatecanMesylate" + "@id": "bts:Anti-BCMAAntibody-drugConjugateAMG224" }, { - "@id": "bts:ExatecanMesylateAnhydrous" + "@id": "bts:Anti-BCMAAntibody-drugConjugateCC-99712" }, { - "@id": "bts:Exemestane" + "@id": "bts:Anti-BCMAAntibody-drugConjugateGSK2857916" }, { - "@id": "bts:Exicorilant" + "@id": "bts:Anti-BCMASparXProteinPlusBCMA-directedAnti-TAAGARCT-cellsCART-ddBCMA" }, { - "@id": "bts:Exisulind" + "@id": "bts:Anti-BCMA/Anti-CD3BispecificAntibodyREGN5459" }, { - "@id": "bts:ExtendedReleaseFlucytosine" + "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG420" }, { - "@id": "bts:ExtendedReleaseMetforminHydrochloride" + "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG701" }, { - "@id": "bts:Extended-releaseOnapristone" + "@id": "bts:Anti-BCMA/CD3BiTEAntibodyREGN5458" }, { - "@id": "bts:Ezabenlimab" + "@id": "bts:Anti-BCMA/PBDADCMEDI2228" }, { - "@id": "bts:EZH1/2InhibitorDS-3201" + "@id": "bts:Anti-BTLAMonoclonalAntibodyTAB004" }, { - "@id": "bts:EZH1/2InhibitorHH2853" + "@id": "bts:Anti-BTN3AAgonisticMonoclonalAntibodyICT01" }, { - "@id": "bts:EZH2inhibitorCPI-0209" + "@id": "bts:Anti-c-fmsMonoclonalAntibodyAMG820" }, { - "@id": "bts:EZH2InhibitorCPI-1205" + "@id": "bts:Anti-c-KITMonoclonalAntibodyCDX0158" }, { - "@id": "bts:EZH2InhibitorPF-06821497" + "@id": "bts:Anti-c-MetAntibody-drugConjugateHTI-1066" }, { - 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"@id": "bts:FenretinidePhospholipidSuspensionST-001" + "@id": "bts:Anti-CD19MonoclonalAntibodyMDX-1342" }, { - "@id": "bts:FGFReceptorAntagonistHGS1036" + "@id": "bts:Anti-CD19MonoclonalAntibodyMEDI-551" }, { - "@id": "bts:FGF/FGFRPathwayInhibitorE7090" + "@id": "bts:Anti-CD19MonoclonalAntibodyXmAb5574" }, { - "@id": "bts:FGFRInhibitorASP5878" + "@id": "bts:Anti-CD19-DM4ImmunoconjugateSAR3419" }, { - "@id": "bts:FGFRInhibitorAZD4547" + "@id": "bts:Anti-CD19/Anti-CD22BispecificImmunotoxinDT2219ARL" }, { - "@id": "bts:FGFRInhibitorCPL304110" + "@id": "bts:Anti-CD19/CD22CARNKCells" }, { - "@id": "bts:FGFRInhibitorDebio1347" + "@id": "bts:Anti-CD19/CD3BiTEAntibodyAMG562" }, { - "@id": "bts:FGFRInhibitorTAS-120" + "@id": "bts:Anti-CD19/CD3TetravalentAntibodyAFM11" }, { - "@id": "bts:FGFR/CSF-1RInhibitor3D185" + "@id": "bts:Anti-CD20MonoclonalAntibodyB001" }, { - "@id": "bts:FGFR/VEGFR/PDGFR/FLT3/SRCInhibitorXL999" + "@id": "bts:Anti-CD20MonoclonalAntibodyBAT4306F" }, { - "@id": "bts:FGFR1/2/3InhibitorHMPL-453" + "@id": "bts:Anti-CD20MonoclonalAntibodyMIL62" }, { - "@id": "bts:FGFR2InhibitorRLY-4008" + "@id": "bts:Anti-CD20MonoclonalAntibodyPRO131921" }, { - "@id": "bts:FGFR4AntagonistINCB062079" + "@id": "bts:Anti-CD20MonoclonalAntibodySCT400" }, { - "@id": "bts:FGFR4InhibitorBLU9931" + "@id": "bts:Anti-CD20MonoclonalAntibodyTL011" }, { - "@id": "bts:FGFR4InhibitorFGF401" + "@id": "bts:Anti-CD20MonoclonalAntibody-Interferon-alphaFusionProteinIGN002" }, { - "@id": "bts:FGFR4InhibitorH3B-6527" + "@id": "bts:Anti-CD20-engineeredToxinBodyMT-3724" }, { - "@id": "bts:FGFR4InhibitorICP-105" + "@id": "bts:Anti-CD20/Anti-CD3BispecificIgMAntibodyIGM2323" }, { - "@id": "bts:Fianlimab" + "@id": "bts:Anti-CD20/CD3MonoclonalAntibodyREGN1979" }, { - "@id": "bts:Fibromun" + "@id": "bts:Anti-CD20/CD3MonoclonalAntibodyXmAb13676" }, { - "@id": "bts:Ficlatuzumab" + "@id": "bts:Anti-CD205Antibody-drugConjugateOBT076" }, { - "@id": "bts:Figitumumab" + "@id": "bts:Anti-CD22ADCTRPH-222" }, { - "@id": "bts:Filanesib" + "@id": "bts:Anti-CD22MonoclonalAntibody-MMAEConjugateDCDT2980S" }, { - 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"@id": "bts:Isatuximab" + "@id": "bts:ArginaseInhibitorINCB001158" }, { - "@id": "bts:Iso-fludelone" + "@id": "bts:ArginineButyrate" }, { - "@id": "bts:IsobruceinB" + "@id": "bts:ArnebiaIndigoJadePearlTopicalCream" }, { - "@id": "bts:IsocoumarinNM-3" + "@id": "bts:ArsenicTrioxide" }, { - "@id": "bts:Isotretinoin" + "@id": "bts:ArsenicTrioxideCapsuleFormulationORH2014" }, { - "@id": "bts:Ispinesib" + "@id": "bts:ArtemetherSublingualSpray" }, { - "@id": "bts:IspinesibMesylate" + "@id": "bts:ArtemisininDimer" }, { - "@id": "bts:ISS1018CpGOligodeoxynucleotide" + "@id": "bts:Artesunate" }, { - "@id": "bts:Istiratumab" + "@id": "bts:ArugulaSeedPowder" }, { - "@id": "bts:Itacitinib" + "@id": "bts:ArylHydrocarbonReceptorAntagonistBAY2416964" }, { - "@id": "bts:ItacitinibAdipate" + "@id": "bts:ArylHydrocarbonReceptorInhibitorIK-175" }, { - "@id": "bts:ITKInhibitorCPI-818" + "@id": "bts:Asaley" }, { - "@id": "bts:Itraconazole" + "@id": "bts:Asciminib" }, { - "@id": "bts:ItraconazoleDispersionInPolymerMatrix" + "@id": "bts:Ascrinvacumab" }, { - "@id": "bts:Ivaltinostat" + "@id": "bts:AshwagandhaRootPowderExtract" }, { - "@id": "bts:Ivosidenib" + "@id": "bts:ASP4132" }, { - "@id": "bts:Ivuxolimab" + "@id": "bts:Aspacytarabine" }, { - "@id": "bts:Ixabepilone" + "@id": "bts:Asparaginase" }, { - "@id": "bts:Ixazomib" + "@id": "bts:AsparaginaseErwiniachrysanthemi" }, { - "@id": "bts:IxazomibCitrate" + "@id": "bts:AstatineAt211Anti-CD38MonoclonalAntibodyOKT10-B10" }, { - "@id": "bts:JAKInhibitor" + "@id": "bts:AstatineAt211Anti-CD45MonoclonalAntibodyBC8-B10" }, { - "@id": "bts:JAKInhibitorINCB047986" + "@id": "bts:Astuprotimut-R" }, { - "@id": "bts:JAK1InhibitorAZD4205" + "@id": "bts:Asulacrine" }, { - "@id": "bts:JAK1InhibitorINCB052793" + "@id": "bts:AsulacrineIsethionate" }, { - "@id": "bts:JAK2InhibitorAZD1480" + "@id": "bts:Asunercept" }, { - "@id": "bts:JAK2InhibitorBMS-911543" + "@id": "bts:At211MonoclonalAntibody81C6" }, { - "@id": "bts:JAK2InhibitorXL019" + "@id": "bts:Atamestane" }, { - "@id": "bts:JAK2/SrcInhibitorNS-018" + "@id": "bts:Atezolizumab" }, { - 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"@id": "bts:Landogrozumab" + "@id": "bts:AuroraBSerine/ThreonineKinaseInhibitorTAK-901" }, { - "@id": "bts:Laniquidar" + "@id": "bts:AuroraB/CKinaseInhibitorGSK1070916A" }, { - "@id": "bts:LanreotideAcetate" + "@id": "bts:AurorakinaseA/BinhibitorTT-00420" }, { - "@id": "bts:Lapachone" + "@id": "bts:AuroraKinaseInhibitorAMG900" }, { - "@id": "bts:Lapatinib" + "@id": "bts:AuroraKinaseInhibitorBI811283" }, { - "@id": "bts:LapatinibDitosylate" + "@id": "bts:AuroraKinaseInhibitorMLN8054" }, { - "@id": "bts:LaprituximabEmtansine" + "@id": "bts:AuroraKinaseInhibitorPF-03814735" }, { - "@id": "bts:Lapuleucel-T" + "@id": "bts:AuroraKinaseInhibitorSNS-314" }, { - "@id": "bts:Laromustine" + "@id": "bts:AuroraKinaseInhibitorTTP607" }, { - "@id": "bts:Larotaxel" + "@id": "bts:AuroraKinase/VEGFR2InhibitorCYC116" }, { - "@id": "bts:LarotinibMesylate" + "@id": "bts:AutologousACTR-CD16-CD28-expressingT-lymphocytesACTR707" }, { - "@id": "bts:Larotrectinib" + "@id": "bts:AutologousAFPSpecificTCellReceptorTransducedTCellsC-TCR055" }, { - 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"@id": "bts:LenvatinibMesylate" + "@id": "bts:AutologousAnti-CD19CART-cells19(T2)28z1xx" }, { - "@id": "bts:Lenzilumab" + "@id": "bts:AutologousAnti-CD19CART-cellsIM19" }, { - "@id": "bts:Lerociclib" + "@id": "bts:AutologousAnti-CD19CARTCR-zeta/4-1BB-transducedT-lymphocyteshuCART19" }, { - "@id": "bts:Lestaurtinib" + "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-expressingT-cellsCNCT19" }, { - "@id": "bts:LetetresgeneAutoleucel" + "@id": "bts:AutologousAnti-CD19CAR-CD28T-cellsET019002" }, { - "@id": "bts:Letolizumab" + "@id": "bts:AutologousAnti-CD19CAR-CD3zeta-4-1BB-expressingT-cellsPZ01" }, { - "@id": "bts:Letrozole" + "@id": "bts:AutologousAnti-CD19CAR-expressingT-lymphocytesCLIC-1901" }, { - "@id": "bts:Leucovorin" + "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsAUTO1" }, { - "@id": "bts:LeucovorinCalcium" + "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsSJCAR19" }, { - "@id": "bts:Leuprolide" + "@id": "bts:AutologousAnti-CD19T-cellReceptorTcellsET190L1" }, { - "@id": "bts:LeuprolideAcetate" + "@id": "bts:AutologousAnti-CD19TAC-TcellsTAC01-CD19" }, { - "@id": "bts:LeuprolideMesylateInjectableSuspension" + "@id": "bts:AutologousAnti-CD19/CD20BispecificNanobody-basedCAR-Tcells" }, { - "@id": "bts:Leurubicin" + "@id": "bts:AutologousAnti-CD19/CD22CART-cellsAUTO3" }, { - "@id": "bts:Levetiracetam" + "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressingCD4+/CD8+CentralMemoryT-lymphocytesJCAR014" }, { - "@id": "bts:LevoleucovorinCalcium" + "@id": "bts:AutologousAnti-CD19CAR-HER2t/CD22CAR-EGFRt-expressingT-cells" }, { - "@id": "bts:Levothyroxine" + "@id": "bts:AutologousAnti-CD20CARTransducedCD4/CD8EnrichedT-cellsMB-CART20.1" }, { - "@id": "bts:LevothyroxineSodium" + "@id": "bts:AutologousAnti-CD22CAR-4-1BB-TCRz-transducedT-lymphocytesCART22-65s" }, { - "@id": "bts:Lexatumumab" + "@id": "bts:AutologousAnti-EGFRCAR-transducedCXCR5-modifiedT-lymphocytes" }, { - "@id": "bts:Lexibulin" + "@id": "bts:AutologousAnti-FLT3CARTCellsAMG553" }, { - "@id": "bts:Liarozole" + "@id": "bts:AutologousAnti-HLA-A*02/AFPTCRm-expressingT-cellsET140202" }, { - "@id": "bts:LiarozoleFumarate" + "@id": "bts:AutologousAnti-HLA-A*0201/AFPCART-cellsET1402L1" }, { - "@id": "bts:LiarozoleHydrochloride" + "@id": "bts:AutologousAnti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressingT-cellsAIC100" }, { - "@id": "bts:Licartin" + "@id": "bts:AutologousAnti-kappaLightChainCAR-CD28-expressingT-lymphocytes" }, { - "@id": "bts:Licorice" + "@id": "bts:AutologousAnti-NY-ESO-1/LAGE-1TCR-transducedc259TLymphocytesGSK3377794" }, { - "@id": "bts:LifastuzumabVedotin" + "@id": "bts:AutologousAnti-PD-1Antibody-activatedTumor-infiltratingLymphocytes" }, { - "@id": "bts:Lifileucel" + "@id": "bts:AutologousAnti-PSMACAR-TCellsP-PSMA-101" }, { - "@id": "bts:Lifirafenib" + "@id": "bts:AutologousAXL-targetedCART-cellsCCT301-38" }, { - "@id": "bts:Light-activatedAU-011" + "@id": "bts:AutologousB-cell/Monocyte-presentingHER2/neuAntigenVaccineBVAC-B" }, { - "@id": "bts:Light-EmittingOncolyticVacciniaVirusGL-ONC1" + "@id": "bts:AutologousBCMA-targetedCARTCellsCC-98633" }, { - "@id": "bts:Lilotomab" + "@id": "bts:AutologousBCMA-targetedCARTCellsLCAR-B4822M" }, { - "@id": "bts:Limonene;(+)-" + "@id": "bts:AutologousBi-epitopeBCMA-targetedCART-cellsJNJ-68284528" }, { - "@id": "bts:Limonene;(+/-)-" + "@id": "bts:AutologousBispecificBCMA/CD19-targetedCAR-TCellsGC012F" }, { - "@id": "bts:Linifanib" + "@id": "bts:AutologousBispecificCD19/CD22-targetedCAR-TCellsGC022" }, { - "@id": "bts:LinoleylCarbonate-Paclitaxel" + "@id": "bts:AutologousBoneMarrow-derivedCD34/CXCR4-positiveStemCellsAMR-001" }, { - "@id": "bts:Linperlisib" + "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3005" }, { - "@id": "bts:Linrodostat" + "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3006" }, { - "@id": "bts:Linsitinib" + "@id": "bts:AutologousCD123-4SCAR-expressingT-cells4SCAR123" }, { - "@id": "bts:Lintuzumab" + "@id": "bts:AutologousCD19CAR-expressingCD4+/CD8+T-cellsMB-CART19.1" }, { - "@id": "bts:LiothyronineI-131" + "@id": "bts:AutologousCD19-targetedCARTCellsCC-97540" }, { - "@id": "bts:LiothyronineSodium" + "@id": "bts:AutologousCD19-targetedCARTCellsJWCAR029" }, { - "@id": "bts:LipidEncapsulatedAnti-PLK1siRNATKM-PLK1" + "@id": "bts:AutologousCD19-targetedCAR-TCellsGC007F" }, { - "@id": "bts:LipidNanoparticleEncapsulatedmRNAsEncodingHumanIL-12A/IL-12BMEDI-1191" + "@id": "bts:AutologousCD19/PD-1BispecificCAR-TCells" }, { - "@id": "bts:LipidNanoparticleEncapsulatedOX40LmRNA-2416" + "@id": "bts:AutologousCD20-4SCAR-expressingT-cells4SCAR20" }, { - "@id": "bts:LipidNanoparticleEncapsulatingGlutathioneS-transferasePsiRNANBF-006" + "@id": "bts:AutologousCD22-4SCAR-expressingT-cells4SCAR22" }, { - "@id": "bts:LipidNanoparticleEncapsulatingmRNAsEncodingHumanOX40L/IL-23/IL-36gammamRNA-2752" + "@id": "bts:AutologousCD38-4SCAR-expressingT-cells4SCAR38" }, { - "@id": "bts:LiposomalBcl-2AntisenseOligonucleotideBP1002" + "@id": "bts:AutologousClonalNeoantigenTCellsATL001" }, { - "@id": "bts:Liposomalc-rafAntisenseOligonucleotide" + "@id": "bts:AutologousCRISPR-editedAnti-CD19CARTCellsXYF19" }, { - "@id": "bts:LiposomalCurcumin" + "@id": "bts:AutologousDeepIL-15PrimedT-cellsTRQ15-01" }, { - "@id": "bts:LiposomalCytarabine" + "@id": "bts:AutologousDendriticCellVaccineACT2001" }, { - "@id": "bts:LiposomalDaunorubicinCitrate" + "@id": "bts:AutologousDendriticCell-basedImmunotherapeuticAV0113" }, { - "@id": "bts:LiposomalDocetaxel" + "@id": "bts:AutologousFRa-4SCAR-expressingT-cells4SCAR-FRa" }, { - "@id": "bts:LiposomalEribulinMesylate" + "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032CD8alphaTCells" }, { - "@id": "bts:LiposomalHPV-16E6/E7MultipeptideVaccinePDS0101" + "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032TCells" }, { - "@id": "bts:LiposomalIrinotecan" + "@id": "bts:AutologousHeat-ShockProtein70PeptideVaccineAG-858" }, { - "@id": "bts:LiposomalMitoxantroneHydrochloride" + "@id": "bts:AutologousHPV16E7-specificHLA-A*02:01-restrictedTCRGeneEngineeredLymphocytesKITE-439" }, { - "@id": "bts:LiposomalMUC1/PET-lipidAVaccineONT-10" + "@id": "bts:AutologousLMP1/LMP2/EBNA1-specificHLA-A02:01/24:02/11:01-restrictedTCR-expressingT-lymphocytesYT-E001" }, { - "@id": "bts:LiposomalNDDP" + "@id": "bts:AutologousMAGE-A3/A6-specificTCRGene-engineeredLymphocytesKITE-718" }, { - "@id": "bts:LiposomalRheniumRe186" + "@id": "bts:AutologousMCPyV-specificHLA-A02-restrictedTCR-transducedCD4+andCD8+T-cellsFH-MCVA2TCR" }, { - "@id": "bts:LiposomalSN-38" + "@id": "bts:AutologousMesenchymalStemCellsApceth101" }, { - "@id": "bts:LiposomalTopotecanFF-10850" + "@id": "bts:AutologousMesothelin-specificHumanmRNACAR-transfectedPBMCsMCY-M11" }, { - "@id": "bts:LiposomalVinorelbine" + "@id": "bts:AutologousMonocyte-derivedLysate-pulsedDendriticCellVaccinePV-001-DC" }, { - "@id": "bts:LiposomalVinorelbineTartrate" + "@id": "bts:AutologousMulti-lineagePotentialCells" }, { - "@id": "bts:Liposome" + "@id": "bts:AutologousNectin-4/FAP-targetedCAR-TCells" }, { - "@id": "bts:Liposome-encapsulatedDaunorubicin-Cytarabine" + "@id": "bts:AutologousNKG2DCART-cellsCYAD-02" }, { - "@id": "bts:Liposome-EncapsulatedDoxorubicinCitrate" + "@id": "bts:AutologousNKG2DCAR-CD3zeta-DAP10-expressingT-LymphocytesCYAD-01" }, { - 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"@id": "bts:Litronesib" + "@id": "bts:AutologousTCR-engineeredT-cellsIMA202" }, { - "@id": "bts:Live-attenuatedDouble-deletedListeriamonocytogenesBacteriaJNJ-64041809" + "@id": "bts:AutologousTCR-engineeredT-cellsIMA203" }, { - "@id": "bts:Live-AttenuatedListeriaEncodingHumanMesothelinVaccineCRS-207" + "@id": "bts:AutologousTCRm-expressingT-cellsET140203" }, { - "@id": "bts:Live-attenuatedListeriamonocytogenes-encodingEGFRvIII-NY-ESO-1VaccineADU-623" + "@id": "bts:AutologousTetravalentDendriticCellVaccineMIDRIX4-LUNG" }, { - "@id": "bts:LiverXReceptorbetaAgonistRGX-104" + "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-144" }, { - "@id": "bts:Lm-tLLO-neoantigensVaccineADXS-NEO" + "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-145" }, { - "@id": "bts:LMB-1Immunotoxin" + "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-145-S1" }, { - "@id": "bts:LMB-2Immunotoxin" + "@id": "bts:AutologousTumorInfiltratingLymphocytesMDA-TIL" }, { - "@id": "bts:LMB-7Immunotoxin" + "@id": "bts:AutologousUniversalCAR-expressingT-lymphocytesUniCAR02-T" }, { - "@id": "bts:LMB-9Immunotoxin" + "@id": "bts:Avadomide" }, { - "@id": "bts:LmddA-LLO-chHER2FusionProtein-secretingLive-attenuatedListeriaCancerVaccineADXS31-164" + "@id": "bts:AvadomideHydrochloride" }, { - "@id": "bts:LMP-2:340-349PeptideVaccine" + "@id": "bts:Avapritinib" }, { - "@id": "bts:LMP-2:419-427PeptideVaccine" + "@id": "bts:Avdoralimab" }, { - "@id": "bts:LMP2-specificTCellReceptor-transducedAutologousT-lymphocytes" + "@id": "bts:Avelumab" }, { - "@id": "bts:LMP7InhibitorM3258" + "@id": "bts:Aviscumine" }, { - "@id": "bts:Lobaplatin" + "@id": "bts:AvitinibMaleate" }, { - "@id": "bts:Lodapolimab" + "@id": "bts:AxalimogeneFilolisbac" }, { - "@id": "bts:Lometrexol" + "@id": "bts:Axatilimab" }, { - "@id": "bts:LometrexolSodium" + "@id": "bts:AxicabtageneCiloleucel" }, { - "@id": "bts:Lomustine" + "@id": "bts:Axitinib" }, { - "@id": "bts:Lonafarnib" + "@id": "bts:AXLInhibitorDS-1205c" }, { - "@id": "bts:LoncastuximabTesirine" + "@id": "bts:AXLInhibitorSLC-391" }, { - "@id": "bts:LongPeptideVaccine7" + "@id": "bts:AXLReceptorTyrosineKinase/cMETInhibitorBPI-9016M" }, { - "@id": "bts:Long-actingReleasePasireotide" + "@id": "bts:AXL/FLT3/VEGFR2InhibitorKC1036" }, { - "@id": "bts:Lontucirev" + "@id": "bts:Axl/MerInhibitorINCB081776" }, { - "@id": "bts:Lorlatinib" + "@id": "bts:Axl/MerInhibitorPF-07265807" }, { - "@id": "bts:Lorukafuspalfa" + "@id": "bts:Azacitidine" }, { - "@id": "bts:LorvotuzumabMertansine" + "@id": "bts:Azapicyl" }, { - "@id": "bts:LosatuxizumabVedotin" + "@id": "bts:Azaribine" }, { - "@id": "bts:Losoxantrone" + "@id": "bts:Azaserine" }, { - "@id": "bts:LosoxantroneHydrochloride" + "@id": "bts:Azathioprine" }, { - "@id": "bts:Lovastatin" + "@id": "bts:Azimexon" }, { - "@id": "bts:LOXL2InhibitorPAT-1251" + "@id": "bts:AzintuxizumabVedotin" }, { - "@id": "bts:LRP5AntagonistBI905681" + "@id": "bts:AziridinylbenzoquinoneRH1" }, { - "@id": "bts:LRP5/6AntagonistBI905677" + "@id": "bts:Azotomycin" }, { - "@id": "bts:LSD1InhibitorCC-90011" + "@id": "bts:Azurin:50-77CellPenetratingPeptidep28" }, { - "@id": "bts:LSD1InhibitorGSK2879552" + "@id": "bts:B-Raf/VEGFR-2InhibitorRAF265" }, { - 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"@id": "bts:LutetiumLu177DOTA-biotin" + "@id": "bts:Bavituximab" }, { - "@id": "bts:LutetiumLu177DOTA-N3-CTT1403" + "@id": "bts:Bazedoxifene" }, { - "@id": "bts:LutetiumLu177DOTA-Tetulomab" + "@id": "bts:Bazlitoran" }, { - "@id": "bts:LutetiumLu177Dotatate" + "@id": "bts:BC-819Plasmid/PolyethylenimineComplex" }, { - "@id": "bts:LutetiumLu177Lilotomab-satetraxetan" + "@id": "bts:BCGSolution" }, { - "@id": "bts:LutetiumLu177MonoclonalAntibodyCC49" + "@id": "bts:BCGTokyo-172StrainSolution" }, { - "@id": "bts:LutetiumLu177MonoclonalAntibodyJ591" + "@id": "bts:BCGVaccine" }, { - "@id": "bts:LutetiumLu177PP-F11N" + "@id": "bts:Bcl-2InhibitorAPG2575" }, { - "@id": "bts:LutetiumLu177SatoreotideTetraxetan" + "@id": "bts:Bcl-2InhibitorBCL201" }, { - "@id": "bts:LutetiumLu177-DOTA-EB-TATE" + "@id": "bts:Bcl-2InhibitorBGB-11417" }, { - "@id": "bts:LutetiumLu177-DTPA-omburtamab" + "@id": "bts:Bcl-2InhibitorLP-108" }, { - "@id": "bts:LutetiumLu177-Edotreotide" + "@id": "bts:Bcl-2InhibitorS65487" }, { - "@id": "bts:LutetiumLu177-NeoB" + "@id": "bts:Bcl-XsAdenovirusVaccine" }, { - "@id": "bts:LutetiumLu177-PSMA-617" + "@id": "bts:BCMAxCD3T-cellEngagingAntibodyCC-93269" }, { - "@id": "bts:LutetiumLu-177Capromab" + "@id": "bts:BCMA-CD19CompoundCARTCells" }, { - "@id": "bts:LutetiumLu-177Girentuximab" + "@id": "bts:BCMA/CD3eTri-specificT-cellActivatingConstructHPN217" }, { - "@id": "bts:LutetiumLu-177PSMA-R2" + "@id": "bts:Bcr-AblKinaseInhibitorK0706" }, { - "@id": "bts:LutetiumLu-177Rituximab" + "@id": "bts:Bcr-AblKinaseInhibitorPF-114" }, { - "@id": "bts:LV.IL-2/B7.1-TransducedAMLBlastVaccineRFUSIN2-AML1" + "@id": "bts:BCR-ABL/KIT/AKT/ERKInhibitorHQP1351" }, { - "@id": "bts:LyophilizedBlackRaspberryLozenge" + "@id": "bts:Beauvericin" }, { - "@id": "bts:LyophilizedBlackRaspberrySalivaSubstitute" + "@id": "bts:Becatecarin" }, { - "@id": "bts:Lysine-specificDemethylase1InhibitorINCB059872" + "@id": "bts:Belagenpumatucel-L" }, { - "@id": "bts:Lyso-ThermosensitiveLiposomeDoxorubicin" + "@id": "bts:BelantamabMafodotin" }, { - "@id": "bts:MaackiaamurensisSeedLectin" + "@id": "bts:Belapectin" }, { - "@id": "bts:Macimorelin" + "@id": "bts:Belimumab" }, { - "@id": "bts:Macitentan" + "@id": "bts:Belinostat" }, { - "@id": "bts:Macrocycle-bridgedSTINGAgonistE7766" + "@id": "bts:BelotecanHydrochloride" }, { - "@id": "bts:Maekmoondong-tang" + "@id": "bts:Belvarafenib" }, { - "@id": "bts:Mafosfamide" + "@id": "bts:Belzutifan" }, { - "@id": "bts:MAGE-10.A2" + "@id": "bts:Bemarituzumab" }, { - "@id": "bts:MAGE-A1-specificTCellReceptor-transducedAutologousT-cells" + "@id": "bts:Bemcentinib" }, { - "@id": "bts:MAGE-A3MultipeptideVaccineGL-0817" + "@id": "bts:Bempegaldesleukin" }, { - "@id": "bts:MAGE-A3PeptideVaccine" + "@id": "bts:Benaxibine" }, { - "@id": "bts:MAGE-A3-specificImmunotherapeuticGSK2132231A" + "@id": "bts:Bendamustine" }, { - "@id": "bts:MAGE-A4-specificTCRGene-transducedAutologousTLymphocytesTBI-1201" + "@id": "bts:BendamustineHydrochloride" }, { - "@id": "bts:MagnesiumValproate" + "@id": "bts:Bendamustine-containingNanoparticle-basedFormulationRXDX-107" }, { - "@id": "bts:Magrolimab" + "@id": "bts:BenzaldehydeDimethaneSulfonate" }, { - "@id": "bts:MALT1InhibitorJNJ-67856633" + "@id": "bts:Benzoylphenylurea" }, { - "@id": "bts:Manelimab" + "@id": "bts:BerberineChloride" }, { - "@id": "bts:Mannosulfan" + "@id": "bts:Bermekimab" }, { - "@id": "bts:MannosylerythritolLipid" + "@id": "bts:Bersanlimab" }, { - "@id": "bts:Mapatumumab" + "@id": "bts:BerubicinHydrochloride" }, { - "@id": "bts:MarabaOncolyticVirusExpressingMutantHPVE6/E7" + "@id": "bts:Berzosertib" }, { - "@id": "bts:Marcellomycin" + "@id": "bts:BETBromodomainInhibitorZEN-3694" }, { - "@id": "bts:MARCKSProteinInhibitorBIO-11006" + "@id": "bts:BETInhibitorABBV-744" }, { - "@id": "bts:Margetuximab" + "@id": "bts:BETInhibitorBAY1238097" }, { - "@id": "bts:Marimastat" + "@id": "bts:BETinhibitorBI894999" }, { - "@id": "bts:Marizomib" + "@id": "bts:BETInhibitorBMS-986158" }, { - "@id": "bts:MasitinibMesylate" + "@id": "bts:BETInhibitorCC-90010" }, { - "@id": "bts:Masoprocol" + "@id": "bts:BETInhibitorCPI-0610" }, { - "@id": "bts:MAT2AInhibitorAG-270" + "@id": "bts:BETInhibitorFT-1101" }, { - "@id": "bts:MatrixMetalloproteinaseInhibitorMMI270" + "@id": "bts:BETInhibitorGS-5829" }, { - "@id": "bts:Matuzumab" + "@id": "bts:BETInhibitorGSK2820151" }, { - "@id": "bts:Mavelertinib" + "@id": "bts:BETInhibitorINCB054329" }, { - "@id": "bts:Mavorixafor" + "@id": "bts:BETInhibitorINCB057643" }, { - "@id": "bts:Maytansine" + "@id": "bts:BETInhibitorRO6870810" }, { - "@id": "bts:MCL-1InhibitorABBV-467" + "@id": "bts:BET-bromodomainInhibitorODM-207" }, { - "@id": "bts:MCL-1InhibitorAMG176" + "@id": "bts:BetaAlethine" }, { - "@id": "bts:MCL-1inhibitorAMG397" + "@id": "bts:Beta-Carotene" }, { - "@id": "bts:Mcl-1InhibitorAZD5991" + "@id": "bts:Beta-elemene" }, { - "@id": "bts:Mcl-1InhibitorMIK665" + "@id": "bts:Beta-Glucan" }, { - "@id": "bts:MDM2AntagonistASTX295" + "@id": "bts:Beta-GlucanMM-10-001" }, { - "@id": "bts:MDM2AntagonistRO5045337" + "@id": "bts:Beta-lapachoneProdrugARQ761" }, { - "@id": "bts:MDM2AntagonistRO6839921" + "@id": "bts:Beta-ThioguanineDeoxyriboside" }, { - "@id": "bts:MDM2InhibitorAMG-232" + "@id": "bts:BetaglucinGel" }, { - "@id": "bts:MDM2InhibitorAMGMDS3" + "@id": "bts:BetulinicAcid" }, { - "@id": "bts:MDM2InhibitorBI907828" + "@id": "bts:Bevacizumab" }, { - "@id": "bts:MDM2InhibitorKRT-232" + "@id": "bts:Bexarotene" }, { - "@id": "bts:MDM2/MDMXInhibitorALRN-6924" + "@id": "bts:Bexmarilimab" }, { - "@id": "bts:MDRModulatorCBT-1" + "@id": "bts:BF-200GelFormulation" }, { - "@id": "bts:Mechlorethamine" + "@id": "bts:BH3MimeticABT-737" }, { - "@id": "bts:MechlorethamineHydrochloride" + "@id": "bts:Bi-functionalAlkylatingAgentVAL-083" }, { - "@id": "bts:MechlorethamineHydrochlorideGel" + "@id": "bts:Bicalutamide" }, { - "@id": "bts:Medorubicin" + "@id": "bts:Bimiralisib" }, { - "@id": "bts:Medroxyprogesterone" + "@id": "bts:Binetrakin" }, { - "@id": "bts:MedroxyprogesteroneAcetate" + "@id": "bts:Binimetinib" }, { - "@id": "bts:MegestrolAcetate" + "@id": "bts:BintrafuspAlfa" }, { - "@id": "bts:MEK1/2InhibitorAS703988/MSC2015103B" + "@id": "bts:Birabresib" }, { - "@id": "bts:MEK1/2InhibitorFCN-159" + "@id": "bts:Birinapant" }, { - "@id": "bts:MEKInhibitorAZD8330" + "@id": "bts:Bis(choline)tetrathiomolybdate" }, { - "@id": "bts:MEKInhibitorCI-1040" + "@id": "bts:Bisantrene" }, { - "@id": "bts:MEKinhibitorCS3006" + "@id": "bts:BisantreneHydrochloride" }, { - "@id": "bts:MEKInhibitorGDC-0623" + "@id": "bts:Bisnafide" }, { - "@id": "bts:MEKInhibitorHL-085" + "@id": "bts:BisnafideDimesylate" }, { - "@id": "bts:MEKInhibitorPD0325901" + "@id": "bts:BispecificAntibody2B1" }, { - "@id": "bts:MEKInhibitorRO4987655" + "@id": "bts:BispecificAntibodyAGEN1223" }, { - "@id": "bts:MEKInhibitorSHR7390" + "@id": "bts:BispecificAntibodyAMG509" }, { - "@id": "bts:MEKInhibitorTAK-733" + "@id": "bts:BispecificAntibodyGS-1423" }, { - "@id": "bts:MEKInhibitorWX-554" + "@id": "bts:BispecificAntibodyMDX-H210" }, { - "@id": "bts:MEK-1/MEKK-1InhibitorE6201" + "@id": "bts:BispecificAntibodyMDX447" }, { - "@id": "bts:MEK/AuroraKinaseInhibitorBI847325" + "@id": "bts:Bisthianostat" }, { - "@id": "bts:MelanomaMonoclonalAntibodyhIgG2A" + "@id": "bts:BiTEAntibodyAMG910" }, { - "@id": "bts:MelanomaTRP2CTLEpitopeVaccineSCIB1" + "@id": "bts:BivalentBRD4InhibitorAZD5153" }, { - "@id": "bts:Melapuldencel-T" + "@id": "bts:BizalimogeneRalaplasmid" }, { - "@id": "bts:MELKInhibitorOTS167" + "@id": "bts:Bizelesin" }, { - "@id": "bts:Melphalan" + "@id": "bts:BL22Immunotoxin" }, { - "@id": "bts:MelphalanFlufenamide" + "@id": "bts:BlackCohosh" }, { - "@id": "bts:MelphalanHydrochloride" + "@id": "bts:BlackRaspberryNectar" }, { - "@id": "bts:MelphalanHydrochloride/SulfobutylEtherBeta-CyclodextrinComplex" + "@id": "bts:Bleomycin" }, { - "@id": "bts:Membrane-DisruptingPeptideEP-100" + "@id": "bts:BleomycinA2" }, { - "@id": "bts:Menatetrenone" + "@id": "bts:BleomycinB2" }, { - "@id": "bts:Menin-MLLInteractionInhibitorSNDX-5613" + "@id": "bts:BleomycinSulfate" }, { - "@id": "bts:Menogaril" + "@id": "bts:Blinatumomab" }, { - "@id": "bts:Merbarone" + "@id": "bts:BlueberryPowderSupplement" }, { - 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"@id": "bts:Metamelfalan" + "@id": "bts:BovineCartilage" }, { - "@id": "bts:MetAP2InhibitorAPL-1202" + "@id": "bts:Bozitinib" }, { - "@id": "bts:MetAP2InhibitorSDX-7320" + "@id": "bts:BP-Cx1-PlatinumComplexBP-C1" }, { - "@id": "bts:Metarrestin" + "@id": "bts:BR96-DoxorubicinImmunoconjugate" }, { - "@id": "bts:MetatinibTromethamine" + "@id": "bts:Brachyury-expressingYeastVaccineGI-6301" }, { - "@id": "bts:Metformin" + "@id": "bts:BRAFInhibitor" }, { - "@id": "bts:MetforminHydrochloride" + "@id": "bts:BRAFInhibitorARQ736" }, { - "@id": "bts:MethanolExtractionResidueofBCG" + "@id": "bts:BRAFInhibitorBGB-3245" }, { - "@id": "bts:Methazolamide" + "@id": "bts:BRAFInhibitorPLX8394" }, { - "@id": "bts:MethionineAminopeptidase2InhibitorM8891" + "@id": "bts:BRAF(V600E)KinaseInhibitorABM-1310" }, { - "@id": "bts:MethionineAminopeptidase2InhibitorPPI-2458" + "@id": "bts:BRAF(V600E)KinaseInhibitorRO5212054" }, { - "@id": "bts:Methotrexate" + "@id": "bts:BRAF/EGFRInhibitorBGB-283" }, { - "@id": "bts:MethotrexateSodium" + "@id": "bts:BRAFV600/PI3KInhibitorASN003" }, { - "@id": "bts:Methotrexate-ETherapeuticImplant" + "@id": "bts:BRD4InhibitorPLX2853" }, { - "@id": "bts:Methotrexate-EncapsulatingAutologousTumor-DerivedMicroparticles" + "@id": "bts:BRD4InhibitorPLX51107" }, { - "@id": "bts:Methoxsalen" + "@id": "bts:Breflate" }, { - "@id": "bts:Methoxyamine" + "@id": "bts:Brentuximab" }, { - "@id": "bts:MethoxyamineHydrochloride" + "@id": "bts:BrentuximabVedotin" }, { - "@id": "bts:Methyl-5-AminolevulinateHydrochlorideCream" + "@id": "bts:Brequinar" }, { - "@id": "bts:Methylcantharidimide" + "@id": "bts:BrequinarSodium" }, { - "@id": "bts:MethylmercaptopurineRiboside" + "@id": "bts:BriciclibSodium" }, { - "@id": "bts:Methylprednisolone" + "@id": "bts:Brigatinib" }, { - "@id": "bts:MethylprednisoloneAcetate" + "@id": "bts:Brilanestrant" }, { - "@id": "bts:MethylprednisoloneSodiumSuccinate" + "@id": "bts:BrimonidineTartrateNanoemulsionOCU-300" }, { - "@id": "bts:Methylselenocysteine" + "@id": "bts:Brivanib" }, { - "@id": "bts:Methyltestosterone" + "@id": "bts:BrivanibAlaninate" }, { - "@id": "bts:Metoprine" + "@id": "bts:Brivudine" }, { - "@id": "bts:Mevociclib" + "@id": "bts:BrivudinePhosphoramidate" }, { - "@id": "bts:Mezagitamab" + "@id": "bts:Broad-SpectrumHumanPapillomavirusVaccineV505" }, { - "@id": "bts:Mibefradil" + "@id": "bts:BroccoliSprout/BroccoliSeedExtractSupplement" }, { - "@id": "bts:MibefradilDihydrochloride" + "@id": "bts:Bromacrylide" }, { - "@id": "bts:MicellarNanoparticle-encapsulatedEpirubicin" + "@id": "bts:BromebricAcid" }, { - "@id": "bts:MicroNeedleArray-Doxorubicin" + "@id": "bts:BromocriptineMesylate" }, { - "@id": "bts:MicrobiomeGEN-001" + "@id": "bts:Brontictuzumab" }, { - "@id": "bts:Microbiome-derivedPeptideVaccineEO2401" + "@id": "bts:BrostacillinHydrochloride" }, { - "@id": "bts:Microparticle-encapsulatedCYP1B1-encodingDNAVaccineZYC300" + "@id": "bts:Brostallicin" }, { - "@id": "bts:MicrotubuleInhibitorSCB01A" + "@id": "bts:Broxuridine" }, { - "@id": "bts:Midostaurin" + "@id": "bts:BruceanolA" }, { - "@id": "bts:Mifamurtide" + "@id": "bts:BruceanolB" }, { - "@id": "bts:Mifepristone" + "@id": "bts:BruceanolC" }, { - "@id": "bts:MilademetanTosylate" + "@id": "bts:BruceanolD" }, { - "@id": "bts:Milataxel" + "@id": "bts:BruceanolE" }, { - "@id": "bts:Milatuzumab" + "@id": "bts:BruceanolF" }, { - "@id": "bts:Milatuzumab-DoxorubicinAntibody-DrugConjugateIMMU-110" + "@id": "bts:BruceanolG" }, { - "@id": "bts:MilciclibMaleate" + "@id": "bts:BruceanolH" }, { - "@id": "bts:MilkThistle" + "@id": "bts:Bruceantin" }, { - "@id": "bts:Miltefosine" + "@id": "bts:Bryostatin1" }, { - "@id": "bts:Minretumomab" + "@id": "bts:BTKInhibitorARQ531" }, { - "@id": "bts:Mipsagargin" + "@id": "bts:BTKInhibitorCT-1530" }, { - "@id": "bts:Miptenalimab" + "@id": "bts:BTKInhibitorDTRMWXHS-12" }, { - "@id": "bts:Mirabegron" + "@id": "bts:BTKInhibitorHZ-A-018" }, { - "@id": "bts:Miransertib" + "@id": "bts:BTKInhibitorICP-022" }, { - "@id": "bts:Mirdametinib" + "@id": "bts:BTKInhibitorLOXO-305" }, { - "@id": "bts:MirvetuximabSoravtansine" + "@id": "bts:BTKInhibitorM7583" }, { - "@id": "bts:MirzotamabClezutoclax" + "@id": "bts:BTKinhibitorTG-1701" }, { - "@id": "bts:Misonidazole" + "@id": "bts:Budigalimab" }, { - "@id": "bts:MistletoeExtract" + "@id": "bts:Budotitane" }, { - "@id": "bts:Mitazalimab" + "@id": "bts:Bufalin" }, { - "@id": "bts:Mitindomide" + "@id": "bts:Buparlisib" }, { - "@id": "bts:Mitobronitol" + "@id": "bts:Burixafor" }, { - "@id": "bts:MitochondrialOxidativePhosphorylationInhibitorATR-101" + "@id": "bts:BurixaforHydrobromide" }, { - "@id": "bts:Mitoclomine" + "@id": "bts:Burosumab" }, { - "@id": "bts:Mitoflaxone" + "@id": "bts:Buserelin" }, { - "@id": "bts:Mitoguazone" + "@id": "bts:BushenCuluanDecoction" }, { - "@id": "bts:MitoguazoneDihydrochloride" + "@id": "bts:Bushen-JianpiDecoction" }, { - "@id": "bts:Mitolactol" + "@id": "bts:Busulfan" }, { - "@id": "bts:Mitomycin" + "@id": "bts:ButhionineSulfoximine" }, { - "@id": "bts:MitomycinA" + "@id": "bts:BXQ-350NanovesicleFormulation" }, { - "@id": "bts:MitomycinB" + "@id": "bts:C-KitInhibitorPLX9486" }, { - "@id": "bts:MitomycinCAnalogKW-2149" + "@id": "bts:C-MetInhibitorABN401" }, { - "@id": "bts:MitosisInhibitorT1101Tosylate" + "@id": "bts:C-MetInhibitorAL2846" }, { - "@id": "bts:Mitotane" + "@id": "bts:C-MetInhibitorAMG208" }, { - "@id": "bts:Mitotenamine" + "@id": "bts:C-MetInhibitorAMG337" }, { - "@id": "bts:Mitoxantrone" + "@id": "bts:C-MetInhibitorGST-HG161" }, { - "@id": "bts:MitoxantroneHydrochloride" + "@id": "bts:C-MetInhibitorHS-10241" }, { - "@id": "bts:Mitozolomide" + "@id": "bts:C-MetInhibitorJNJ-38877605" }, { - "@id": "bts:Mivavotinib" + "@id": "bts:C-MetInhibitorMK2461" }, { - "@id": "bts:Mivebresib" + "@id": "bts:C-MetInhibitorMK8033" }, { - "@id": "bts:Mivobulin" + "@id": "bts:C-MetInhibitorMSC2156119J" }, { - "@id": "bts:MivobulinIsethionate" + "@id": "bts:C-mybAntisenseOligonucleotideG4460" }, { - "@id": "bts:MixedBacteriaVaccine" + "@id": "bts:C-rafAntisenseOligonucleotideISIS5132" }, { - "@id": "bts:MK0731" + "@id": "bts:C-VISABikDD:Liposome" }, { - "@id": "bts:MKC-1" + "@id": "bts:C/EBPBetaAntagonistST101" }, { - "@id": "bts:MKNK1InhibitorBAY1143269" + "@id": "bts:CAB-ROR2-ADCBA3021" }, { - "@id": "bts:MMPInhibitorS-3304" + "@id": "bts:Cabazitaxel" }, { - "@id": "bts:MNK1/2InhibitorETC-1907206" + "@id": "bts:Cabiralizumab" }, { - "@id": "bts:Mobocertinib" + "@id": "bts:Cabozantinib" }, { - "@id": "bts:Mocetinostat" + "@id": "bts:CabozantinibS-malate" }, { - "@id": "bts:ModakafuspAlfa" + "@id": "bts:Cactinomycin" }, { - "@id": "bts:ModifiedVacciniaAnkara-vectoredHPV16/18VaccineJNJ-65195208" + "@id": "bts:CaffeicAcidPhenethylEster" }, { - "@id": "bts:ModifiedVitaminDBindingProteinMacrophageActivatorEF-022" + "@id": "bts:CAIXInhibitorDTP348" }, { - "@id": "bts:Modotuximab" + "@id": "bts:CAIXInhibitorSLC-0111" }, { - "@id": "bts:MOFCompoundRiMO-301" + "@id": "bts:CalaspargasePegol-mknl" }, { - "@id": "bts:Mofarotene" + "@id": "bts:Calcitriol" }, { - "@id": "bts:Mogamulizumab" + "@id": "bts:CalciumRelease-activatedChannelInhibitorCM4620" }, { - "@id": "bts:Molibresib" + "@id": "bts:CalciumRelease-activatedChannelsInhibitorRP4010" }, { - "@id": "bts:MolibresibBesylate" + "@id": "bts:CalciumSaccharate" }, { - "@id": "bts:Momelotinib" + "@id": "bts:Calculusbovis/Moschus/Olibanum/MyrrhaCapsule" }, { - "@id": "bts:Monalizumab" + "@id": "bts:CalicheamicinGamma1I" }, { - "@id": "bts:MonocarboxylateTransporter1InhibitorAZD3965" + "@id": "bts:CamidanlumabTesirine" }, { - "@id": "bts:MonoclonalAntibody105AD7Anti-idiotypeVaccine" + "@id": "bts:Camptothecin" }, { - "@id": "bts:MonoclonalAntibody11D10" + "@id": "bts:CamptothecinAnalogueTLC388" }, { - "@id": "bts:MonoclonalAntibody11D10Anti-IdiotypeVaccine" + "@id": "bts:CamptothecinGlycoconjugateBAY38-3441" }, { - "@id": "bts:MonoclonalAntibody14G2A" + "@id": "bts:CamptothecinSodium" }, { - "@id": "bts:MonoclonalAntibody1F5" + "@id": "bts:Camptothecin-20(S)-O-PropionateHydrate" }, { - "@id": "bts:MonoclonalAntibody3622W94" + "@id": "bts:Camrelizumab" }, { - "@id": "bts:MonoclonalAntibody3F8" + "@id": "bts:Camsirubicin" }, { - "@id": "bts:MonoclonalAntibody3H1Anti-IdiotypeVaccine" + "@id": "bts:Cancell" }, { - "@id": "bts:MonoclonalAntibody4B5Anti-IdiotypeVaccine" + "@id": "bts:CancerPeptideVaccineS-588410" }, { - "@id": "bts:MonoclonalAntibody7C11" + "@id": "bts:Canerpaturev" }, { - "@id": "bts:MonoclonalAntibody81C6" + "@id": "bts:CanertinibDihydrochloride" }, { - "@id": "bts:MonoclonalAntibodyA1G4Anti-IdiotypeVaccine" + "@id": "bts:Canfosfamide" }, { - "@id": "bts:MonoclonalAntibodyA27.15" + "@id": "bts:CanfosfamideHydrochloride" }, { - "@id": "bts:MonoclonalAntibodyA33" + "@id": "bts:Cannabidiol" }, { - "@id": "bts:MonoclonalAntibodyAbGn-7" + "@id": "bts:Cantrixil" }, { - "@id": "bts:MonoclonalAntibodyAK002" + "@id": "bts:CantuzumabRavtansine" }, { - "@id": "bts:MonoclonalAntibodyASP1948" + "@id": "bts:Capecitabine" }, { - "@id": "bts:MonoclonalAntibodyCAL" + "@id": "bts:CapecitabineRapidlyDisintegratingTablet" }, { - "@id": "bts:MonoclonalAntibodyCC49-deltaCH2" + "@id": "bts:Capivasertib" }, { - "@id": "bts:MonoclonalAntibodyCEP-37250/KHK2804" + "@id": "bts:Capmatinib" }, { - "@id": "bts:MonoclonalAntibodyD6.12" + "@id": "bts:Captopril" }, { - "@id": "bts:MonoclonalAntibodyE2.3" + "@id": "bts:CART-CellsAMG119" }, { - "@id": "bts:MonoclonalAntibodyF19" + "@id": "bts:Caracemide" }, { - "@id": "bts:MonoclonalAntibodyGD2Anti-IdiotypeVaccine" + "@id": "bts:Carbendazim" }, { - "@id": "bts:MonoclonalAntibodyHeFi-1" + "@id": "bts:Carbetimer" }, { - "@id": "bts:MonoclonalAntibodyHu3S193" + "@id": "bts:Carbogen" }, { - "@id": "bts:MonoclonalAntibodyHuAFP31" + "@id": "bts:CarbonC14-pamiparib" }, { - "@id": "bts:MonoclonalAntibodyHuHMFG1" + "@id": "bts:Carboplatin" }, { - "@id": "bts:MonoclonalAntibodyhuJ591" + "@id": "bts:Carboquone" }, { - "@id": "bts:MonoclonalAntibodyHuPAM4" + "@id": "bts:Carboxyamidotriazole" }, { - "@id": "bts:MonoclonalAntibodyIMMU-14" + "@id": "bts:CarboxyamidotriazoleOrotate" }, { - "@id": "bts:MonoclonalAntibodyL6" + "@id": "bts:CarboxyphenylRetinamide" }, { - "@id": "bts:MonoclonalAntibodyLym-1" + "@id": "bts:Carfilzomib" }, { - "@id": "bts:MonoclonalAntibodym170" + "@id": "bts:Caricotamide/Tretazicar" }, { - "@id": "bts:MonoclonalAntibodyMe1-14F(ab')2" + "@id": "bts:Carlumab" }, { - "@id": "bts:MonoclonalAntibodymuJ591" + "@id": "bts:Carmofur" }, { - "@id": "bts:MonoclonalAntibodyMX35F(ab')2" + "@id": "bts:Carmustine" }, { - "@id": "bts:MonoclonalAntibodyNEO-201" + "@id": "bts:CarmustineImplant" }, { - "@id": "bts:MonoclonalAntibodyR24" + "@id": "bts:CarmustineinEthanol" }, { - "@id": "bts:MonoclonalAntibodyRAV12" + "@id": "bts:CarmustineSustained-ReleaseImplantWafer" }, { - "@id": "bts:MonoclonalAntibodySGN-14" + "@id": "bts:Carotuximab" }, { - "@id": "bts:MonoclonalAntibodyTRK-950" + "@id": "bts:Carubicin" }, { - "@id": "bts:MonoclonalMicrobialEDP1503" + "@id": "bts:CarubicinHydrochloride" }, { - "@id": "bts:MonoclonalT-cellReceptorAnti-CD3scFvFusionProteinIMCgp100" + "@id": "bts:Carzelesin" }, { - "@id": "bts:MonomethylAuristatinE" + "@id": "bts:Carzinophilin" }, { - "@id": "bts:MorindaCitrifoliaFruitExtract" + "@id": "bts:CathelicidinLL-37" }, { - "@id": "bts:Morpholinodoxorubicin" + "@id": "bts:CationicLiposome-EncapsulatedPaclitaxel" }, { - "@id": "bts:Mosedipimod" + "@id": "bts:CationicPeptideCreamCypep-1" }, { - "@id": "bts:Mosunetuzumab" + "@id": "bts:Catumaxomab" }, { - "@id": "bts:Motesanib" + "@id": "bts:CBP/beta-cateninAntagonistPRI-724" }, { - "@id": "bts:MotesanibDiphosphate" + "@id": "bts:CBP/beta-cateninModulatorE7386" }, { - "@id": "bts:MotexafinGadolinium" + "@id": "bts:CCR2AntagonistCCX872-B" }, { - "@id": "bts:MotexafinLutetium" + "@id": "bts:CCR2AntagonistPF-04136309" }, { - "@id": "bts:Motixafortide" + "@id": "bts:CCR2/CCR5AntagonistBMS-813160" }, { - "@id": "bts:Motolimod" + "@id": "bts:CCR4InhibitorFLX475" }, { - "@id": "bts:MOv-gammaChimericReceptorGene" + "@id": "bts:CD11bAgonistGB1275" }, { - "@id": "bts:MoxetumomabPasudotox" + "@id": "bts:CD123-CD33CompoundCARTCells" }, { - "@id": "bts:Mps1InhibitorBAY1217389" + "@id": "bts:CD123-specificTargetingModuleTM123" }, { - "@id": "bts:Mps1InhibitorBOS172722" + "@id": "bts:CD20-CD19CompoundCARTCells" }, { - "@id": "bts:MRNA-basedPersonalizedCancerVaccinemRNA-4157" + "@id": "bts:CD28/ICOSAntagonistALPN-101" }, { - "@id": "bts:MRNA-basedPersonalizedCancerVaccineNCI-4650" + "@id": "bts:CD4-specificTelomerasePeptideVaccineUCPVax" }, { - "@id": "bts:MRNA-basedTriMixMelanomaVaccineECI-006" + "@id": "bts:CD40AgonistMonoclonalAntibodyCP-870;893" }, { - "@id": "bts:MRNA-basedTumor-specificNeoantigenBoostingVaccineGRT-R902" + "@id": "bts:CD40AgonisticMonoclonalAntibodyAPX005M" }, { - "@id": "bts:MRNA-derivedKRAS-targetedVaccineV941" + "@id": "bts:CD44TargetedAgentSPL-108" }, { - "@id": "bts:MRNA-derivedLungCancerVaccineBI1361849" + "@id": "bts:CD44v6-specificCART-cells" }, { - "@id": "bts:MRNA-DerivedProstateCancerVaccineCV9103" + "@id": "bts:CD47AntagonistALX148" }, { - "@id": "bts:MRNA-derivedProstateCancerVaccineCV9104" + "@id": "bts:CD73InhibitorAB680" }, { - "@id": "bts:MTF-1InhibitorAPTO-253HCl" + "@id": "bts:CD73InhibitorLY3475070" }, { - "@id": "bts:MTORInhibitorGDC-0349" + "@id": "bts:CD80-FcFusionProteinALPN-202" }, { - "@id": "bts:MTORKinaseInhibitorAZD8055" + "@id": "bts:CD80-FcFusionProteinFPT155" }, { - "@id": "bts:MTORKinaseInhibitorCC-223" + "@id": "bts:CDC7InhibitorTAK-931" }, { - "@id": "bts:MTORKinaseInhibitorOSI-027" + "@id": "bts:CDC7KinaseInhibitorBMS-863233" }, { - "@id": "bts:MTORKinaseInhibitorPP242" + "@id": "bts:CDC7KinaseInhibitorLY3143921Hydrate" }, { - "@id": "bts:MTOR1/2KinaseInhibitorME-344" + "@id": "bts:CDC7KinaseInhibitorNMS-1116354" }, { - "@id": "bts:MTORC1/2InhibitorLXI-15029" + "@id": "bts:CDKInhibitorAT7519" }, { - "@id": "bts:MTORC1/2KinaseInhibitorBI860585" + "@id": "bts:CDKInhibitorR547" }, { - "@id": "bts:MTORC1/mTORC2/DHFRInhibitorABTL0812" + "@id": "bts:CDKInhibitorSNS-032" }, { - "@id": "bts:MUC-1/WT1Peptide-primedAutologousDendriticCells" + "@id": "bts:CDK/JAK2/FLT3InhibitorTG02Citrate" }, { - "@id": "bts:MUC1-targetedPeptideGO-203-2C" + "@id": "bts:CDK1InhibitorBEY1107" }, { - "@id": "bts:MucoadhesivePaclitaxelFormulation" + "@id": "bts:CDK1/2/4InhibitorAG-024322" }, { - "@id": "bts:Multi-AGCKinaseInhibitorAT13148" + "@id": "bts:CDK2InhibitorPF-07104091" }, { - "@id": "bts:Multi-epitopeAnti-folateReceptorPeptideVaccineTPIV200" + "@id": "bts:CDK2/4/6/FLT3InhibitorFN-1501" }, { - "@id": "bts:Multi-epitopeHER2PeptideVaccineH2NVAC" + "@id": "bts:CDK2/5/9InhibitorCYC065" }, { - "@id": "bts:Multi-epitopeHER2PeptideVaccineTPIV100" + "@id": "bts:CDK4InhibitorP1446A-05" }, { - "@id": "bts:Multi-glioblastoma-peptide-targetingAutologousDendriticCellVaccineICT-107" + "@id": "bts:CDK4/6Inhibitor" }, { - "@id": "bts:Multi-kinaseInhibitorTPX-0022" + "@id": "bts:CDK4/6InhibitorBPI-16350" }, { - "@id": "bts:Multi-kinaseInhibitorXL092" + "@id": "bts:CDK4/6InhibitorCS3002" }, { - "@id": "bts:Multi-modeKinaseInhibitorEOC317" + "@id": "bts:CDK4/6InhibitorFCN-437" }, { - "@id": "bts:Multi-neo-epitopeVaccineOSE2101" + "@id": "bts:CDK4/6InhibitorG1T38" }, { - "@id": "bts:Multifunctional/MultitargetedAnticancerAgentOMN54" + "@id": "bts:CDK4/6InhibitorHS-10342" }, { - "@id": "bts:MultikinaseInhibitor4SC-203" + "@id": "bts:CDK4/6InhibitorSHR6390" }, { - "@id": "bts:MultikinaseInhibitorAEE788" + "@id": "bts:CDK4/6InhibitorTQB3616" }, { - "@id": "bts:MultikinaseInhibitorAT9283" + "@id": "bts:CDK7InhibitorCT7001" }, { - "@id": "bts:MultikinaseInhibitorSAR103168" + "@id": "bts:CDK7InhibitorSY-1365" }, { - "@id": "bts:MultipeptideVaccineS-588210" + "@id": "bts:CDK7InhibitorSY-5609" }, { - "@id": "bts:MultitargetedTyrosineKinaseInhibitorJNJ-26483327" + "@id": "bts:CDK8/19InhibitorSEL120" }, { - "@id": "bts:Muparfostat" + "@id": "bts:CDK9InhibitorAZD4573" }, { - "@id": "bts:Mureletecan" + "@id": "bts:CEA-MUC-1-TRICOMVaccineCV301" }, { - "@id": "bts:Murizatoclax" + "@id": "bts:CEA-targetingAgentRG6123" }, { - "@id": "bts:MuscadineGrapeExtract" + "@id": "bts:CEBPA-targetingsaRNAMTL-CEBPALiposome" }, { - "@id": "bts:MutantIDH1InhibitorDS-1001" + "@id": "bts:Cedazuridine" }, { - "@id": "bts:Mutantp53ActivatorCOTI-2" + "@id": "bts:Cedazuridine/AzacitidineCombinationAgentASTX030" }, { - "@id": "bts:Mutant-selectiveEGFRInhibitorPF-06459988" + "@id": "bts:Cedazuridine/DecitabineCombinationAgentASTX727" }, { - "@id": "bts:MVATumor-specificNeoantigenBoostingVaccineMVA-209-FSP" + "@id": "bts:Cedefingol" }, { - "@id": "bts:MVA-BNSmallpoxVaccine" + "@id": "bts:Cediranib" }, { - "@id": "bts:MVA-FCU1TG4023" + "@id": "bts:CediranibMaleate" }, { - "@id": "bts:MVX-1-loadedMacrocapsule/autologousTumorCellVaccineMVX-ONCO-1" + "@id": "bts:Celecoxib" }, { - "@id": "bts:MYC-targetingsiRNADCR-MYC" + "@id": "bts:CellCycleCheckpoint/DNARepairAntagonistIC83" }, { - "@id": "bts:MycobacteriumtuberculosisArabinomannanZ-100" + "@id": "bts:Cemadotin" }, { - "@id": "bts:Mycobacteriumw" + "@id": "bts:CemadotinHydrochloride" }, { - "@id": "bts:MycophenolicAcid" + "@id": "bts:Cemiplimab" }, { - "@id": "bts:N-(5-tert-butyl-3-isoxazolyl)-N-(4-(4-pyridinyl)oxyphenyl)Urea" + "@id": "bts:Cenersen" }, { - "@id": "bts:N-dihydrogalactochitosan" + "@id": "bts:Cenisertib" }, { - "@id": "bts:N-Methylformamide" + "@id": "bts:CENP-EInhibitorGSK-923295" }, { - "@id": "bts:N;N-DibenzylDaunomycin" + "@id": "bts:Ceralasertib" }, { - "@id": "bts:NA17-AAntigen" + "@id": "bts:CeramideNanoliposome" }, { - "@id": "bts:NA17.A2PeptideVaccine" + "@id": "bts:Cerdulatinib" }, { - "@id": "bts:Nab-paclitaxel" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-92480" }, { - "@id": "bts:Nab-paclitaxel/Rituximab-coatedNanoparticleAR160" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-99282" }, { - "@id": "bts:NadofarageneFiradenovec" + "@id": "bts:CereblonModulatorCC-90009" }, { - "@id": "bts:Nagrestipen" + "@id": "bts:CergutuzumabAmunaleukin" }, { - "@id": "bts:Namirotene" + "@id": "bts:Ceritinib" }, { - "@id": "bts:Namodenoson" + "@id": "bts:Cesalin" }, { - "@id": "bts:NAMPTInhibitorOT-82" + "@id": "bts:CEtKRASAntisenseOligonucleotideAZD4785" }, { - "@id": "bts:Nanafrocin" + "@id": "bts:Cetrelimab" }, { - "@id": "bts:Nanatinostat" + "@id": "bts:Cetuximab" }, { - "@id": "bts:Nanocell-encapsulatedmiR-16-basedmicroRNAMimic" + "@id": "bts:CetuximabSarotalocan" }, { - "@id": "bts:NanoparticleAlbumin-BoundDocetaxel" + "@id": "bts:Cetuximab-IR700ConjugateRM-1929" }, { - "@id": "bts:NanoparticleAlbumin-BoundRapamycin" + "@id": "bts:Cetuximab-loadedEthylcellulosePolymericNanoparticlesDecoratedwithOctreotide(SY)" }, { - "@id": "bts:NanoparticleAlbumin-boundThiocolchicineDimernab-5404" + "@id": "bts:Cevipabulin" }, { - "@id": "bts:NanoparticlePaclitaxelOintmentSOR007" + "@id": "bts:CevipabulinFumarate" }, { - "@id": "bts:Nanoparticle-basedPaclitaxelSuspension" + "@id": "bts:CevipabulinSuccinate" }, { - "@id": "bts:Nanoparticle-encapsulatedDoxorubicinHydrochloride" + "@id": "bts:Cevostamab" }, { - "@id": "bts:NanoscaleCoordinationPolymerNanoparticlesCPI-100" + "@id": "bts:CFMSTyrosineKinaseInhibitorARRY-382" }, { - "@id": "bts:NanosomalDocetaxelLipidSuspension" + "@id": "bts:Chaparrin" }, { - "@id": "bts:Napabucasin" + "@id": "bts:Chaparrinone" }, { - "@id": "bts:NaphthalimideAnalogueUNBS5162" + "@id": "bts:CheckpointKinaseInhibitorAZD7762" }, { - "@id": "bts:NaptumomabEstafenatox" + "@id": "bts:CheckpointKinaseInhibitorXL844" }, { - "@id": "bts:Naquotinib" + "@id": "bts:Chemotherapy" }, { - "@id": "bts:NaratuximabEmtansine" + "@id": "bts:Chiauranib" }, { - "@id": "bts:Narnatumab" + "@id": "bts:ChimericMonoclonalAntibody81C6" }, { - "@id": "bts:Natalizumab" + "@id": "bts:ChiNingDecoction" }, { - "@id": "bts:NaturalIFN-alphaOPC-18" + "@id": "bts:Chk1InhibitorCCT245737" }, { - "@id": "bts:NaturalKillerCellsZRx101" + "@id": "bts:Chk1InhibitorGDC-0425" }, { - "@id": "bts:Navarixin" + "@id": "bts:Chk1InhibitorGDC-0575" }, { - "@id": "bts:Navicixizumab" + "@id": "bts:CHK1InhibitorMK-8776" }, { - "@id": "bts:Navitoclax" + "@id": "bts:CHK1InhibitorPF-477736" }, { - "@id": "bts:Navoximod" + "@id": "bts:Chlorambucil" }, { - "@id": "bts:NavyBeanPowder" + "@id": "bts:Chlorodihydropyrimidine" }, { - "@id": "bts:Naxitamab" + "@id": "bts:Chloroquine" }, { - "@id": "bts:Nazartinib" + "@id": "bts:ChloroquinoxalineSulfonamide" }, { - "@id": "bts:NcmtRNAOligonucleotideAndes-1537" + "@id": "bts:Chlorotoxin" }, { - "@id": "bts:Necitumumab" + "@id": "bts:Chlorotoxin(EQ)-CD28-CD3zeta-CD19t-expressingCART-lymphocytes" }, { - "@id": "bts:Nedaplatin" + "@id": "bts:Chlorozotocin" }, { - "@id": "bts:NEDD8ActivatingEnzymeE1InhibitorTAS4464" + "@id": "bts:CholineKinaseAlphaInhibitorTCD-717" }, { - "@id": "bts:Nedisertib" + "@id": "bts:CHP-NY-ESO-1PeptideVaccineIMF-001" }, { - "@id": "bts:Nelarabine" + "@id": "bts:ChromomycinA3" }, { - "@id": "bts:Nelipepimut-S" + "@id": "bts:Chrysanthemummorifolium/Ganodermalucidum/Glycyrrhizaglabra/Isatisindigotica/Panaxpseudoginseng/Rabdosiarubescens/Scutellariabaicalensis/SeronarepensSupplement" }, { - "@id": "bts:Nelipepimut-SPlusGM-CSFVaccine" + "@id": "bts:Cibisatamab" }, { - "@id": "bts:Nemorubicin" + "@id": "bts:CiclopiroxProdrugCPX-POM" }, { - "@id": "bts:NemorubicinHydrochloride" + "@id": "bts:CidanHerbalCapsule" }, { - "@id": "bts:NeoantigenVaccineGEN-009" + "@id": "bts:Ciforadenant" }, { - "@id": "bts:Neoantigen-basedGlioblastomaVaccine" + "@id": "bts:Cilengitide" }, { - "@id": "bts:Neoantigen-basedMelanoma-Poly-ICLCVaccine" + "@id": "bts:CiltacabtageneAutoleucel" }, { - "@id": "bts:Neoantigen-basedRenalCellCarcinoma-Poly-ICLCVaccine" + "@id": "bts:Cimetidine" }, { - "@id": "bts:Neoantigen-basedTherapeuticCancerVaccineGRT-C903" + "@id": "bts:CinacalcetHydrochloride" }, { - 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"@id": "bts:Urelumab" + "@id": "bts:METTyrosineKinaseInhibitorEMD1204831" }, { - "@id": "bts:Uroacitides" + "@id": "bts:METTyrosineKinaseInhibitorPF-04217903" }, { - "@id": "bts:Urokinase-DerivedPeptideA6" + "@id": "bts:METTyrosineKinaseInhibitorSAR125844" }, { - "@id": "bts:UrsolicAcid" + "@id": "bts:METTyrosineKinaseInhibitorSGX523" }, { - "@id": "bts:USP14/UCHL5InhibitorVLX1570" + "@id": "bts:METxMETBispecificAntibodyREGN5093" }, { - "@id": "bts:Utomilumab" + "@id": "bts:Metamelfalan" }, { - "@id": "bts:Uzansertib" + "@id": "bts:MetAP2InhibitorAPL-1202" }, { - "@id": "bts:V930Vaccine" + "@id": "bts:MetAP2InhibitorSDX-7320" }, { - "@id": "bts:Vaccine-SensitizedDrainingLymphNodeCells" + "@id": "bts:Metarrestin" }, { - "@id": "bts:Vacciniummyrtillus/Macleayacordata/EchinaceaangustifoliaExtractGranules" + "@id": "bts:MetatinibTromethamine" }, { - "@id": "bts:Vactosertib" + "@id": "bts:Metformin" }, { - "@id": "bts:VadacabtageneLeraleucel" + "@id": "bts:MetforminHydrochloride" }, { - "@id": "bts:VadastuximabTalirine" + "@id": "bts:MethanolExtractionResidueofBCG" }, { - "@id": "bts:Vadimezan" + "@id": "bts:Methazolamide" }, { - "@id": "bts:Valecobulin" + "@id": "bts:MethionineAminopeptidase2InhibitorM8891" }, { - "@id": "bts:Valemetostat" + "@id": "bts:MethionineAminopeptidase2InhibitorPPI-2458" }, { - "@id": "bts:ValproicAcid" + "@id": "bts:Methotrexate" }, { - "@id": "bts:Valrubicin" + "@id": "bts:MethotrexateSodium" }, { - "@id": "bts:Valspodar" + "@id": "bts:Methotrexate-ETherapeuticImplant" }, { - "@id": "bts:Vandetanib" + "@id": "bts:Methotrexate-EncapsulatingAutologousTumor-DerivedMicroparticles" }, { - "@id": "bts:Vandetanib-elutingRadiopaqueBeadBTG-002814" + "@id": "bts:Methoxsalen" }, { - "@id": "bts:VandortuzumabVedotin" + "@id": "bts:Methoxyamine" }, { - "@id": "bts:Vantictumab" + "@id": "bts:MethoxyamineHydrochloride" }, { - "@id": "bts:Vanucizumab" + "@id": "bts:Methyl-5-AminolevulinateHydrochlorideCream" }, { - "@id": "bts:Vapreotide" + "@id": "bts:Methylcantharidimide" }, { - "@id": "bts:Varlilumab" + "@id": "bts:MethylmercaptopurineRiboside" }, { - "@id": "bts:Varlitinib" + "@id": "bts:Methylprednisolone" }, { - "@id": "bts:VarlitinibTosylate" + "@id": "bts:MethylprednisoloneAcetate" }, { - "@id": "bts:VascularDisruptingAgentBNC105" + "@id": "bts:MethylprednisoloneSodiumSuccinate" }, { - "@id": "bts:VascularDisruptingAgentBNC105P" + "@id": "bts:Methylselenocysteine" }, { - "@id": "bts:VascularDisruptingAgentZD6126" + "@id": "bts:Methyltestosterone" }, { - "@id": "bts:Vatalanib" + "@id": "bts:Metoprine" }, { - "@id": "bts:VatalanibSuccinate" + "@id": "bts:Mevociclib" }, { - "@id": "bts:Vecabrutinib" + "@id": "bts:Mezagitamab" }, { - "@id": "bts:Vector-peptideConjugatedPaclitaxel" + "@id": "bts:Mibefradil" }, { - "@id": "bts:Vedolizumab" + "@id": "bts:MibefradilDihydrochloride" }, { - "@id": "bts:VEGFInhibitorPTC299" + "@id": "bts:MicellarNanoparticle-encapsulatedEpirubicin" }, { - "@id": "bts:VEGF/HGF-targetingDARPinMP0250" + "@id": "bts:MicroNeedleArray-Doxorubicin" }, { - "@id": "bts:VEGFRInhibitorKRN951" + "@id": "bts:MicrobiomeGEN-001" }, { - "@id": "bts:VEGFR-2DNAVaccineVXM01" + "@id": "bts:Microbiome-derivedPeptideVaccineEO2401" }, { - "@id": "bts:VEGFR/FGFRInhibitorODM-203" + "@id": "bts:Microparticle-encapsulatedCYP1B1-encodingDNAVaccineZYC300" }, { - "@id": "bts:VEGFR/PDGFRTyrosineKinaseInhibitorTAK-593" + "@id": "bts:MicrotubuleInhibitorSCB01A" }, { - "@id": "bts:VEGFR2TyrosineKinaseInhibitorPF-00337210" + "@id": "bts:Midostaurin" }, { - "@id": "bts:VEGFR2/PDGFR/c-Kit/Flt-3InhibitorSU014813" + "@id": "bts:Mifamurtide" }, { - "@id": "bts:Veliparib" + "@id": "bts:Mifepristone" }, { - "@id": "bts:Veltuzumab" + "@id": "bts:MilademetanTosylate" }, { - "@id": "bts:Vemurafenib" + "@id": "bts:Milataxel" }, { - "@id": "bts:Venetoclax" + "@id": "bts:Milatuzumab" }, { - "@id": "bts:Verapamil" + "@id": "bts:Milatuzumab-DoxorubicinAntibody-DrugConjugateIMMU-110" }, { - "@id": "bts:VerpasepCaltespen" + "@id": "bts:MilciclibMaleate" }, { - "@id": "bts:Verubulin" + "@id": "bts:MilkThistle" }, { - "@id": "bts:VerubulinHydrochloride" + "@id": "bts:Miltefosine" }, { - "@id": "bts:Vesencumab" + "@id": "bts:Minretumomab" }, { - "@id": "bts:Vesigenurtucel-L" + "@id": "bts:Mipsagargin" }, { - "@id": "bts:VGEFMixed-BackboneAntisenseOligonucleotideGEM220" + "@id": "bts:Miptenalimab" }, { - "@id": "bts:VGEFR/c-kit/PDGFRTyrosineKinaseInhibitorXL820" + "@id": "bts:Mirabegron" }, { - "@id": "bts:Viagenpumatucel-L" + "@id": "bts:Miransertib" }, { - "@id": "bts:Vibecotamab" + "@id": "bts:Mirdametinib" }, { - "@id": "bts:Vibostolimab" + "@id": "bts:MirvetuximabSoravtansine" }, { - "@id": "bts:Vilaprisan" + "@id": "bts:MirzotamabClezutoclax" }, { - "@id": "bts:Vinblastine" + "@id": "bts:Misonidazole" }, { - "@id": "bts:VinblastineSulfate" + "@id": "bts:MistletoeExtract" }, { - "@id": "bts:Vincristine" + "@id": "bts:Mitazalimab" }, { - "@id": "bts:VincristineLiposomal" + "@id": "bts:Mitindomide" }, { - "@id": "bts:VincristineSulfate" + "@id": "bts:Mitobronitol" }, { - "@id": "bts:VincristineSulfateLiposome" + "@id": "bts:MitochondrialOxidativePhosphorylationInhibitorATR-101" }, { - 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"@id": "bts:Vosilasarm" + "@id": "bts:Modotuximab" }, { - "@id": "bts:Voxtalisib" + "@id": "bts:MOFCompoundRiMO-301" }, { - "@id": "bts:Vulinacimab" + "@id": "bts:Mofarotene" }, { - "@id": "bts:WarfarinSodium" + "@id": "bts:Mogamulizumab" }, { - "@id": "bts:Wee1InhibitorZN-c3" + "@id": "bts:Molibresib" }, { - "@id": "bts:Wee1KinaseInhibitorDebio0123" + "@id": "bts:MolibresibBesylate" }, { - "@id": "bts:WhiteCarrot" + "@id": "bts:Momelotinib" }, { - "@id": "bts:WntSignalingInhibitorSM04755" + "@id": "bts:Monalizumab" }, { - "@id": "bts:WntSignalingPathwayInhibitorSM08502" + "@id": "bts:MonocarboxylateTransporter1InhibitorAZD3965" }, { - "@id": "bts:Wnt-5aMimicHexapeptideFoxy-5" + "@id": "bts:MonoclonalAntibody105AD7Anti-idiotypeVaccine" }, { - "@id": "bts:Wobe-MugosE" + "@id": "bts:MonoclonalAntibody11D10" }, { - "@id": "bts:WT1PeptideVaccineOCV-501" + "@id": "bts:MonoclonalAntibody11D10Anti-IdiotypeVaccine" }, { - "@id": "bts:WT1PeptideVaccineWT2725" + "@id": "bts:MonoclonalAntibody14G2A" }, { - "@id": "bts:WT1Protein-derivedPeptideVaccineDSP-7888" + "@id": "bts:MonoclonalAntibody1F5" }, { - "@id": "bts:WT1-A10/AS01BImmunotherapeuticGSK2130579A" + "@id": "bts:MonoclonalAntibody3622W94" }, { - "@id": "bts:WT1/PSMA/hTERT-encodingPlasmidDNAINO-5401" + "@id": "bts:MonoclonalAntibody3F8" }, { - "@id": "bts:Xanthohumol" + "@id": "bts:MonoclonalAntibody3H1Anti-IdiotypeVaccine" }, { - "@id": "bts:XBP1-US/XBP1-SP/CD138/CS1MultipeptideVaccinePVX-410" + "@id": "bts:MonoclonalAntibody4B5Anti-IdiotypeVaccine" }, { - "@id": "bts:Xeloda" + "@id": "bts:MonoclonalAntibody7C11" }, { - "@id": "bts:Xentuzumab" + "@id": "bts:MonoclonalAntibody81C6" }, { - "@id": "bts:Xevinapant" + "@id": "bts:MonoclonalAntibodyA1G4Anti-IdiotypeVaccine" }, { - "@id": "bts:XiaoaiJieduDecoction" + "@id": "bts:MonoclonalAntibodyA27.15" }, { - "@id": "bts:XIAPAntisenseOligonucleotideAEG35156" + "@id": "bts:MonoclonalAntibodyA33" }, { - "@id": "bts:XIAP/cIAP1AntagonistASTX660" + "@id": "bts:MonoclonalAntibodyAbGn-7" }, { - 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"@id": "bts:YttriumY90MonoclonalAntibodyHu3S193" + "@id": "bts:MonoclonalAntibodyR24" }, { - "@id": "bts:YttriumY90MonoclonalAntibodyMN-14" + "@id": "bts:MonoclonalAntibodyRAV12" }, { - "@id": "bts:YttriumY90ResinMicrospheres" + "@id": "bts:MonoclonalAntibodySGN-14" }, { - "@id": "bts:YttriumY90TabituximabBarzuxetan" + "@id": "bts:MonoclonalAntibodyTRK-950" }, { - "@id": "bts:YttriumY90-DOTA-Biotin" + "@id": "bts:MonoclonalMicrobialEDP1503" }, { - "@id": "bts:YttriumY90-DOTA-di-HSGPeptideIMP-288" + "@id": "bts:MonoclonalT-cellReceptorAnti-CD3scFvFusionProteinIMCgp100" }, { - "@id": "bts:YttriumY90-Edotreotide" + "@id": "bts:MonomethylAuristatinE" }, { - "@id": "bts:YttriumY90-labeledAnti-FZD10MonoclonalAntibodyOTSA101" + "@id": "bts:MorindaCitrifoliaFruitExtract" }, { - "@id": "bts:YttriumY-90ClivatuzumabTetraxetan" + "@id": "bts:Morpholinodoxorubicin" }, { - "@id": "bts:YttriumY-90EpratuzumabTetraxetan" + "@id": "bts:Mosedipimod" }, { - "@id": "bts:YttriumY-90IbritumomabTiuxetan" + "@id": "bts:Mosunetuzumab" }, { - 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"@id": "bts:ZincFingerNucleaseZFN-758" + "@id": "bts:MRNA-derivedKRAS-targetedVaccineV941" }, { - "@id": "bts:Zinostatin" + "@id": "bts:MRNA-derivedLungCancerVaccineBI1361849" }, { - "@id": "bts:ZinostatinStimalamer" + "@id": "bts:MRNA-DerivedProstateCancerVaccineCV9103" }, { - "@id": "bts:ZirconiumZr89Panitumumab" + "@id": "bts:MRNA-derivedProstateCancerVaccineCV9104" }, { - "@id": "bts:Ziv-Aflibercept" + "@id": "bts:MTF-1InhibitorAPTO-253HCl" }, { - "@id": "bts:Zolbetuximab" + "@id": "bts:MTORInhibitorGDC-0349" }, { - "@id": "bts:ZoledronicAcid" + "@id": "bts:MTORKinaseInhibitorAZD8055" }, { - "@id": "bts:ZoptarelinDoxorubicin" + "@id": "bts:MTORKinaseInhibitorCC-223" }, { - "@id": "bts:Zorifertinib" + "@id": "bts:MTORKinaseInhibitorOSI-027" }, { - "@id": "bts:Zorubicin" + "@id": "bts:MTORKinaseInhibitorPP242" }, { - "@id": "bts:ZorubicinHydrochloride" + "@id": "bts:MTOR1/2KinaseInhibitorME-344" }, { - "@id": "bts:Zotatifin" + "@id": "bts:MTORC1/2InhibitorLXI-15029" }, { - "@id": "bts:ZotiraciclibCitrate" + "@id": "bts:MTORC1/2KinaseInhibitorBI860585" }, { - 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"@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "T1c", - "rdfs:subClassOf": [ + "@id": "bts:NanoparticleAlbumin-BoundDocetaxel" + }, { - "@id": "bts:IndividualPrimaryTumorStage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "T1c", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:T1mi", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "T1mi", - "rdfs:subClassOf": [ + "@id": "bts:NanoparticleAlbumin-BoundRapamycin" + }, { - "@id": "bts:IndividualPrimaryTumorStage" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "T1mi", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:T2", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "T2", - "rdfs:subClassOf": [ + "@id": "bts:NanoparticleAlbumin-boundThiocolchicineDimernab-5404" + }, { - "@id": "bts:IndividualPrimaryTumorStage" - } - ], - "schema:isPartOf": { - 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(e.g. Arizona State University, Boston University, etc.)", - "rdfs:label": "InstitutionFullName", - "rdfs:subClassOf": [ + "@id": "bts:NogapendekinAlfa" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Institution Full Name", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:InstitutionAlias", - "@type": "rdfs:Class", - "rdfs:comment": "Alias of the institution (e.g. ASU, BU, etc.)", - "rdfs:label": "InstitutionAlias", - "rdfs:subClassOf": [ + "@id": "bts:NolatrexedDihydrochloride" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Institution Alias", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:InstitutionLocationState", - "@type": "rdfs:Class", - "rdfs:comment": "The US state the institution is located in. Use Not Applicable, if not applicable.", - "rdfs:label": "InstitutionLocationState", - "rdfs:subClassOf": [ + "@id": "bts:Non-SmallCellLungCancermRNA-DerivedVaccineCV9201" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Norgestrel" + }, { - "@id": "bts:Alabama" + "@id": "bts:NorthAmericanGinsengExtractAFX-2" }, { - "@id": "bts:Alaska" + "@id": "bts:Nortopixantrone" }, { - "@id": "bts:AmericanSamoa" + "@id": "bts:Noscapine" }, { - "@id": "bts:Arizona" + "@id": "bts:NoscapineHydrochloride" }, { - "@id": "bts:Arkansas" + "@id": "bts:NotOtherwiseSpecified" }, { - "@id": "bts:California" + "@id": "bts:NotchSignalingInhibitorPF-06650808" }, { - "@id": "bts:Colorado" + "@id": "bts:NotchSignalingPathwayInhibitorMK0752" }, { - "@id": "bts:Connecticut" + "@id": "bts:NTRK/ROS1InhibitorDS-6051b" }, { - "@id": "bts:Delaware" + "@id": "bts:NucleolinAntagonistIPP-204106N" }, { - "@id": 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- "@id": "bts:Michigan" + "@id": "bts:OblimersenSodium" }, { - "@id": "bts:Minnesota" + "@id": "bts:Ocaratuzumab" }, { - "@id": "bts:MinorOutlyingIslands" + "@id": "bts:Ocrelizumab" }, { - "@id": "bts:Mississippi" + "@id": "bts:Octreotide" }, { - "@id": "bts:Missouri" + "@id": "bts:OctreotideAcetate" }, { - "@id": "bts:Montana" + "@id": "bts:OctreotidePamoate" }, { - "@id": "bts:Nebraska" + "@id": "bts:Odronextamab" }, { - "@id": "bts:Nevada" + "@id": "bts:Ofatumumab" }, { - "@id": "bts:NewHampshire" + "@id": "bts:OfranergeneObadenovec" }, { - "@id": "bts:NewJersey" + "@id": "bts:OglufanideDisodium" }, { - "@id": "bts:NewMexico" + "@id": "bts:Olaparib" }, { - "@id": "bts:NewYork" + "@id": "bts:OlaptesedPegol" }, { - "@id": "bts:NorthCarolina" + "@id": "bts:Olaratumab" }, { - "@id": "bts:NorthDakota" + "@id": "bts:Oleandrin" }, { - "@id": "bts:NorthernMarianaIslands" + "@id": "bts:Oleclumab" }, { - "@id": "bts:NotApplicable" + "@id": "bts:Oligo-fucoidan" }, { - "@id": "bts:Ohio" + "@id": "bts:OligonucleotideSPC2996" }, { - "@id": "bts:Oklahoma" + "@id": "bts:Olinvacimab" }, { - "@id": "bts:Oregon" + "@id": "bts:Olivomycin" }, { - "@id": "bts:Pennsylvania" + "@id": "bts:Olmutinib" }, { - "@id": "bts:PuertoRico" + "@id": "bts:Oltipraz" }, { - "@id": "bts:RhodeIsland" + "@id": "bts:Olutasidenib" }, { - "@id": "bts:SouthCarolina" + "@id": "bts:OlvimulogeneNanivacirepvec" }, { - "@id": "bts:SouthDakota" + "@id": "bts:OmacetaxineMepesuccinate" }, { - "@id": "bts:Tennessee" + "@id": "bts:Ombrabulin" }, { - "@id": "bts:Texas" + "@id": "bts:Omipalisib" }, { - "@id": "bts:U.S.VirginIslands" + "@id": "bts:Onalespib" }, { - "@id": "bts:Utah" + "@id": "bts:OnalespibLactate" }, { - "@id": "bts:Vermont" + "@id": "bts:Onartuzumab" }, { - "@id": "bts:Virginia" + "@id": "bts:Onatasertib" }, { - "@id": "bts:Washington" + "@id": "bts:OncolyticAdenovirusAd5-DNX-2401" }, { - "@id": "bts:WestVirginia" + "@id": "bts:OncolyticAdenovirusORCA-010" }, { - "@id": "bts:Wisconsin" + "@id": 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"sms:validationRules": [] - }, - { - "@id": "bts:California", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "California", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticMeaslesVirusEncodingHelicobacterpyloriNeutrophil-activatingProtein" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "California", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Colorado", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Colorado", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticNewcastleDiseaseVirusMEDI5395" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Colorado", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Connecticut", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Connecticut", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticNewcastleDiseaseVirusMTH-68H" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Connecticut", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Delaware", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Delaware", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticNewcastleDiseaseVirusStrainPV701" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Delaware", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DistrictofColumbia", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DistrictofColumbia", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticVirusASP9801" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "District of Columbia", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Florida", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Florida", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticVirusRP1" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Florida", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Georgia", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Georgia", - "rdfs:subClassOf": [ + "@id": "bts:OndansetronHydrochloride" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Georgia", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Guam", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Guam", - "rdfs:subClassOf": [ + "@id": "bts:Ontorpacept" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Guam", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Hawaii", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Hawaii", - "rdfs:subClassOf": [ + "@id": "bts:Ontuxizumab" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Hawaii", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Idaho", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Idaho", - "rdfs:subClassOf": [ + "@id": "bts:Onvansertib" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Idaho", - "sms:required": "sms:false", - 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"bts:Louisiana", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Louisiana", - "rdfs:subClassOf": [ + "@id": "bts:OportuzumabMonatox" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Louisiana", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Maine", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Maine", - "rdfs:subClassOf": [ + "@id": "bts:Oprozomib" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Maine", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Maryland", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Maryland", - "rdfs:subClassOf": [ + "@id": "bts:Opucolimab" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Maryland", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Massachusetts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Massachusetts", - "rdfs:subClassOf": [ + "@id": "bts:OralAminolevulinicAcidHydrochloride" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Massachusetts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Michigan", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Michigan", - "rdfs:subClassOf": [ + "@id": "bts:OralAzacitidine" + }, { - "@id": "bts:InstitutionLocationState" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Michigan", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Minnesota", - "@type": "rdfs:Class", - "rdfs:comment": 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{ - "@id": "bts:HeadandNeckSquamousCellCarcinoma" + "@id": "bts:Pan-PIMKinaseInhibitorAZD1208" }, { - "@id": "bts:Astroblastoma;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:Pan-PIMKinaseInhibitorNVP-LGB-321" }, { - "@id": "bts:Medulloblastoma;HypercellularLesionWithMarkedAtypia" + "@id": "bts:Pan-RAFInhibitorLXH254" }, { - "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;NOSOrNEC" + "@id": "bts:Pan-RAFInhibitorLY3009120" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" + "@id": "bts:Pan-RAFKinaseInhibitorCCT3833" }, { - "@id": "bts:Neuroma;NOS" + "@id": "bts:Pan-RAFKinaseInhibitorTAK-580" }, { - "@id": "bts:PrecursorCellLymphoblasticLeukemia;NOS" + "@id": "bts:Pan-RARAgonist/AP-1InhibitorLGD1550" }, { - "@id": "bts:HypercellularNeuroepithelialTumorWithSomeFeaturesOfGlioma;PossiblyHighGrade" + "@id": "bts:Pan-TRKInhibitorNOV1601" }, { - "@id": "bts:AcuteLeukemia;NOS" + "@id": "bts:Pan-TRKInhibitorONO-7579" }, { - "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;PapillaryGlioneuronalTumor" + "@id": "bts:Pan-VEGFR/TIE2TyrosineKinaseInhibitorCEP-11981" }, { - "@id": "bts:High-gradeserouscarcinoma" + "@id": "bts:Pancratistatin" }, { - "@id": "bts:MyeloidLeukemia;NOS" + "@id": "bts:Panitumumab" }, { - "@id": "bts:Choriocarcinoma;NOS" + "@id": "bts:Panobinostat" }, { - "@id": "bts:EmbryonalCarcinoma;NOS;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" + "@id": "bts:PanobinostatNanoparticleFormulationMTX110" }, { - "@id": "bts:GiantCellTumorOfBone;NOS" + "@id": "bts:Panulisib" }, { - "@id": "bts:Adenocarcinoma;IntestinalType" + "@id": "bts:Paricalcitol" }, { - "@id": "bts:NotSpecifiedInData" + "@id": "bts:PARP1/2InhibitorIMP4297" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ChoroidPlexusTumors;ChoroidPlexusPapilloma" + "@id": "bts:PARP1/2InhibitorNOV1401" }, { - "@id": "bts:DuctalCarcinomaNOS" + "@id": "bts:PARPInhibitorAZD2461" }, { - "@id": "bts:RenalCellCarcinoma;NOS" + "@id": "bts:PARPInhibitorCEP-9722" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(1;19)(Q23;P13.3);E2A-PBX1(TCF3-PBX1)" + "@id": "bts:PARPInhibitorE7016" }, { - "@id": "bts:MyelodysplasticSyndrome;NOS" + "@id": "bts:PARPInhibitorNMS-03305293" }, { - "@id": "bts:LowGradeFibromyxoidSarcoma" + "@id": "bts:PARP-1/2InhibitorABT-767" }, { - "@id": "bts:BenignCysticNephroma" + "@id": "bts:PARP/TankyraseInhibitor2X-121" }, { - "@id": "bts:GlialNeoplasm" + "@id": "bts:PARP7InhibitorRBN-2397" }, { - "@id": "bts:PapillaryAdenocarcinoma;NOS" + "@id": "bts:Parsaclisib" + }, + { + "@id": "bts:ParsaclisibHydrochloride" + }, + { + "@id": "bts:Parsatuzumab" + }, + { + "@id": "bts:PartiallyEngineeredT-regulatoryCellDonorGraftTRGFT-201" }, { - "@id": "bts:TelangiectaticOsteosarcoma" + "@id": "bts:ParvovirusH-1" }, { - "@id": "bts:Ganglioglioma;NOS;MalignantPeripheralNerveSheathTumor;NOS" + "@id": "bts:Pasireotide" }, { - "@id": "bts:CentralNeurocytoma" + "@id": "bts:Pasotuxizumab" }, { - "@id": "bts:GiantCellTumorOfSoftParts;NOS" + "@id": "bts:Patidegib" }, { - "@id": "bts:GiantCellTumorOfBone;Malignant" + "@id": "bts:PatidegibTopicalGel" }, { - "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated" + "@id": "bts:Patritumab" }, { - "@id": "bts:Glioma;Malignant;DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" + "@id": "bts:PatritumabDeruxtecan" }, { - "@id": "bts:AcuteMegakaryoblasticLeukemia" + "@id": "bts:Patupilone" }, { - "@id": "bts:Germinoma;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" + "@id": "bts:Paxalisib" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumorWithAdjacentCorticalDysplasia;WHOGrade1" + "@id": "bts:Pazopanib" }, { - "@id": "bts:SupratentorialEpendymoma;NOS" + "@id": "bts:PazopanibHydrochloride" }, { - "@id": "bts:MyxoidLiposarcoma" + "@id": "bts:Pbi-shRNASTMN1Lipoplex" }, { - "@id": "bts:AcuteLymphoblasticLeukemia" + "@id": "bts:PBNDerivativeOKN-007" }, { - "@id": "bts:CombinedSmallCell-SquamousCellCarcinoma" + "@id": "bts:PCNU" }, { - "@id": "bts:HighGradeSpindleCellSarcoma" + "@id": "bts:PD-1DirectedProbodyCX-188" }, { - "@id": "bts:Medulloblastoma;Group3Subtype(WHOGrade4)" + "@id": "bts:PD-1Inhibitor" }, { - "@id": "bts:AcuteMonocyticLeukemia" + "@id": "bts:PD-L1InhibitorGS-4224" }, { - "@id": "bts:Neoplasm;NOS" + "@id": "bts:PD-L1InhibitorINCB086550" }, { - "@id": "bts:Retinoblastoma;Grade3" + "@id": "bts:PD-L1/4-1BB/HSATrispecificFusionProteinNM21-1480" }, { - "@id": "bts:YolkSacTumor;NOS;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" + "@id": "bts:PD-L1/PD-L2/VISTAAntagonistCA-170" }, { - "@id": "bts:MyofibroblasticTumor;NOS" + "@id": "bts:PDK1InhibitorAR-12" }, { - "@id": "bts:SexCord-GonadalStromalTumor;MixedForms" + "@id": "bts:PDNA-encodingEmm55AutologousCancerCellVaccineIFx-Hu2.0" }, { - "@id": "bts:AdamantinomatousCraniopharyngioma" + "@id": "bts:PE/HPV16E7/KDELFusionProtein/GPI-0100TVGV-1" }, { - "@id": "bts:MesoblasticNephroma" + "@id": "bts:PEG-interleukin-2" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor;Low-GradeGlioma;PolymorphousLow-GradeNeuroepithelialTumorOfTheYoung" + "@id": "bts:PEG-PEI-cholesterolLipopolymer-encasedIL-12DNAPlasmidVectorGEN-1" }, { - "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;Infant-TypeHemisphericGlioma" + "@id": "bts:PEG-Proline-InterferonAlfa-2b" }, { - "@id": "bts:Rhabdomyosarcoma;NOS" + "@id": "bts:Pegargiminase" }, { - "@id": "bts:MucinousAdenocarcinoma;EndocervicalType" + "@id": "bts:Pegaspargase" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:Pegdinetanib" }, { - "@id": "bts:Ganglioglioma;NOS;GlioneuronalAndNeuronalTumors" + "@id": "bts:Pegfilgrastim" }, { - "@id": "bts:DermoidCyst" + "@id": "bts:Pegilodecakin" }, { - "@id": "bts:AdenocarcinomaCombinedWithOtherTypesOfCarcinoma" + "@id": "bts:PeginterferonAlfa-2a" }, { - "@id": "bts:PrecursorCellLymphoblasticLymphoma;NOS" + "@id": "bts:PeginterferonAlfa-2b" }, { - "@id": "bts:PosteriorFossaEpendymoma;CNSWHOGrade2" + "@id": "bts:Pegvisomant" }, { - "@id": "bts:PituitaryAdenoma;NOS" + "@id": "bts:PegvorhyaluronidaseAlfa" }, { - "@id": "bts:Neoplasm;Malignant;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" + "@id": "bts:PegylatedDeoxycytidineAnalogueDFP-14927" }, { - "@id": "bts:SexCord-GonadalStromalTumor;IncompletelyDifferentiated" + "@id": "bts:PegylatedInterferonAlfa" }, { - "@id": "bts:HighGradeFollicularDerivedThyroidCarcinoma" + "@id": "bts:PegylatedLiposomalBelotecan" }, { - "@id": "bts:DesmoplasticFibroma" + "@id": "bts:PegylatedLiposomalDoxorubicinHydrochloride" }, { - "@id": "bts:Perineuroma" + "@id": "bts:PegylatedLiposomalIrinotecan" }, { - "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant;CNSWHOGrade4" + "@id": "bts:PegylatedLiposomalMitomycinCLipid-basedProdrug" }, { - "@id": "bts:Ganglioglioma" + "@id": "bts:PegylatedLiposomalMitoxantroneHydrochloride" }, { - "@id": "bts:Pancreatobiliary-TypeCarcinoma" + "@id": "bts:PegylatedLiposomalNanoparticle-basedDocetaxelProdrugMNK-010" }, { - "@id": "bts:ParatesticularRhabdomyosarcomaWithDiffuseAnaplasia" + "@id": "bts:PegylatedPaclitaxel" }, { - "@id": "bts:Hemangioblastoma" + "@id": "bts:PegylatedRecombinantHumanArginaseIBCT-100" }, { - "@id": "bts:ColorectalCarcinoma" + "@id": "bts:PegylatedRecombinantHumanHyaluronidasePH20" }, { - "@id": "bts:AcuteMyelomonocyticLeukemia" + "@id": "bts:PegylatedRecombinantInterleukin-2THOR-707" }, { - "@id": "bts:DiffuseMidlineGlioma;H3K27-Altered" + "@id": "bts:PegylatedRecombinantL-asparaginaseErwiniachrysanthemi" }, { - "@id": "bts:T-LymphoblasticLymphoma" + "@id": "bts:PegylatedSN-38ConjugatePLX038" }, { - "@id": "bts:Lymphangioma;NOS" + "@id": "bts:Pegzilarginase" }, { - "@id": "bts:Neoplasm;Benign" + "@id": "bts:Pelabresib" }, { - "@id": "bts:PapillaryIntralymphaticAngioendothelioma" + "@id": "bts:Pelareorep" }, { - "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;ZFTAFusion-Positive" + "@id": "bts:Peldesine" }, { - "@id": "bts:UnclassifiedSarcomaWithRoundCellMorphology" + "@id": "bts:Pelitinib" }, { - "@id": "bts:Glioma" + "@id": "bts:Pelitrexol" }, { - "@id": "bts:Medulloblastoma;Classic(Biphasic)HistologicType;Non-SHH/Non-WNTMolecularGroup;CNSWHOGrade4" + "@id": "bts:Pembrolizumab" }, { - "@id": "bts:SoftTissueSarcoma" + "@id": "bts:Pemetrexed" }, { - "@id": "bts:Xanthogranuloma" + "@id": "bts:PemetrexedDisodium" }, { - "@id": "bts:Neoplasm;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" + "@id": "bts:Pemigatinib" }, { - "@id": "bts:Bronchio-AlveolarCarcinoma;Mucinous" + "@id": "bts:PemlimogeneMerolisbac" }, { - "@id": "bts:HepatocellularCarcinoma;Fibrolamellar" + "@id": "bts:Penberol" }, { - "@id": "bts:PancreaticNeuroendocrineTumor;Nonfunctioning" + "@id": "bts:Penclomedine" }, { - "@id": "bts:MyxopapillaryEpendymoma" + "@id": "bts:Penicillamine" }, { - "@id": "bts:Chondrosarcoma;NOS" + "@id": "bts:Pentamethylmelamine" }, { - "@id": "bts:FavorGanglioglioma" + "@id": "bts:Pentamustine" }, { - "@id": "bts:PapillaryTumorOfPinealRegion" + "@id": "bts:Pentostatin" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithMutatedNPM1" + "@id": "bts:Pentoxifylline" }, { - "@id": "bts:EpithelioidHemangioendothelioma;NOS" + "@id": "bts:PEOX-basedPolymerEncapsulatedPaclitaxelFID-007" }, { - "@id": "bts:Neuroblastoma;NOS" + "@id": "bts:PEP-3-KLHConjugateVaccine" }, { - "@id": "bts:ChondroidChordoma" + "@id": "bts:Pepinemab" }, { - "@id": "bts:InfiltratingDuctAndLobularCarcinoma" + "@id": "bts:Peplomycin" }, { - "@id": "bts:MitoticallyActiveGlial/GlioneuronalNeoplasm" + "@id": "bts:PeplomycinSulfate" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:Peposertib" }, { - "@id": "bts:CPNET" + "@id": "bts:Peptichemio" }, { - "@id": "bts:MycosisFungoides;LangerhansCellHistiocytosis;NOS" + "@id": "bts:Peptide946MelanomaVaccine" }, { - "@id": "bts:T-LymphoblasticLeukemia" + "@id": "bts:Peptide946-TetanusPeptideConjugateMelanomaVaccine" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:Peretinoin" }, { - "@id": "bts:ClearCellMeningioma;Meningioma;Other" + "@id": "bts:PerflenapentEmulsion" }, { - "@id": "bts:AmeloblasticCarcinosarcoma" + "@id": "bts:Perfosfamide" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor;GlioneuronalAndNeuronalTumors" + "@id": "bts:Perifosine" }, { - "@id": "bts:MeningothelialMeningioma" + "@id": "bts:PerillylAlcohol" }, { - "@id": "bts:EpithelioidCellMelanoma" + "@id": "bts:PersonalizedALL-specificMulti-HLA-bindingPeptideVaccine" }, { - "@id": "bts:ProstateCancer" + "@id": "bts:PersonalizedandAdjustedNeoantigenPeptideVaccinePANDA-VAC" }, { - "@id": "bts:Paraganglioma;Malignant" + "@id": "bts:PersonalizedCancerVaccineRO7198457" }, { - "@id": "bts:SmallCellSarcoma" + "@id": "bts:PersonalizedNeoantigenDNAVaccineGNOS-PV01" }, { - "@id": "bts:CystosarcomaPhyllodes;NOS" + "@id": "bts:PersonalizedNeoantigenDNAVaccineGNOS-PVO2" }, { - "@id": "bts:Seminoma;NOS" + "@id": "bts:PersonalizedNeoantigenPeptideVaccineiNeo-Vac-P01" }, { - "@id": "bts:YolkSacTumor;NOS" + "@id": "bts:PersonalizedNeoepitopeYeastVaccineYE-NEO-001" }, { - "@id": "bts:IntraductalCarcinomaNOS" + "@id": "bts:PersonalizedPeptideCancerVaccineNEO-PV-01" }, { - "@id": "bts:Adenocarcinoma;EndocervicalType" + "@id": "bts:Pertuzumab" }, { - "@id": "bts:Neurofibroma;NOS" + "@id": "bts:Pevonedistat" }, { - "@id": "bts:Astroblastoma;Astroblastoma;MN1-Altered;High-GradeGlioma" + "@id": "bts:PexastimogeneDevacirepvec" }, { - "@id": "bts:MeningothelialMeningioma;Grade1" + "@id": "bts:Pexidartinib" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:Pexmetinib" }, { - "@id": "bts:Unknown" + "@id": "bts:PGGBeta-Glucan" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;CNSSarcoma;EwingSarcoma" + "@id": "bts:PGLA/PEGCopolymer-BasedPaclitaxel" }, { - "@id": "bts:Glioma;Malignant;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" + "@id": "bts:PH20Hyaluronidase-expressingAdenovirusVCN-01" }, { - "@id": "bts:EndometrioidAdenocarcinoma;NOS" + "@id": "bts:PhaleriamacrocarpaExtractDLBS-1425" }, { - "@id": "bts:Pancreas-AdenocarcinomaDuctalType" + "@id": "bts:PharmacologicalAscorbate" }, { - "@id": "bts:GiantCellGlioblastoma;Glioblastoma;IDH-Wildtype;High-GradeGlioma" + "@id": "bts:PhellodendronamurenseBarkExtract" }, { - "@id": "bts:Angiomyosarcoma" + "@id": "bts:Phenesterin" }, { - "@id": "bts:CarcinoidTumor" + "@id": "bts:PhenethylIsothiocyanate" }, { - "@id": "bts:AdenosquamousCarcinoma" + "@id": "bts:PhenethylIsothiocyanate-containingWatercressJuice" }, { - "@id": "bts:MetastaticNeuroblastoma" + "@id": "bts:PhenylAcetate" }, { - "@id": "bts:ClearCellSarcomaOfKidney" + "@id": "bts:PhenytoinSodium" }, { - "@id": "bts:InfiltratingDuctMixedWithOtherTypesOfCarcinoma" + "@id": "bts:PhosphaplatinPT-112" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" + "@id": "bts:Phosphatidylcholine-BoundSilybin" }, { - "@id": "bts:EmbryonalCarcinoma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:PhospholipidEther-drugConjugateCLR131" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;CNSGermCellTumors;CNSGerminoma" + "@id": "bts:PhosphoramideMustard" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PleomorphicXanthoastrocytoma" + "@id": "bts:PhosphorodiamidateMorpholinoOligomerAVI-4126" }, { - "@id": "bts:LowCumulativeSunDamageMelanoma" + "@id": "bts:PhosphorusP-32" }, { - "@id": "bts:SupratentorialEpendymoma" + "@id": "bts:PhotodynamicCompoundTLD-1433" }, { - "@id": "bts:OssifyingFibromyxoidTumor;NOS" + "@id": "bts:PhotosensitizerLUZ11" }, { - "@id": "bts:DiffuseLargeB-CellLymphoma;NOS" + "@id": "bts:PhytochlorinSodium-PolyvinylpyrrolidoneComplex" }, { - "@id": "bts:AdenocarcinomaWithNeuroendocrineDifferentiation" + "@id": "bts:PI3KAlpha/BetaInhibitorBAY1082439" }, { - "@id": "bts:AtypicalMeningioma" + "@id": "bts:PI3KAlpha/mTORInhibitorPWT33597Mesylate" }, { - "@id": "bts:Pineoblastoma" + "@id": "bts:PI3KInhibitorACP-319" }, { - "@id": "bts:ChronicMyeloidLeukemia;NOS" + "@id": "bts:PI3KInhibitorBGT226" }, { - "@id": "bts:AtypicalChoroidPlexusPapilloma" + "@id": "bts:PI3KInhibitorGDC-0084" }, { - "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFB" + "@id": "bts:PI3KInhibitorGDC0077" }, { - "@id": "bts:PleomorphicXanthoastrocytoma;NOS;High-GradeGlioma" + "@id": "bts:PI3KInhibitorGSK1059615" }, { - "@id": "bts:OxyphilicAdenocarcinoma" + "@id": "bts:PI3KInhibitorWX-037" }, { - "@id": "bts:FavorPilocyticAstrocytoma;CNSWHOGrade1" + "@id": "bts:PI3KInhibitorZSTK474" }, { - "@id": "bts:PoorlyDifferentiated;IntermediateMitotic-KaryorrhecticIndex" + "@id": "bts:PI3Kp110beta/deltaInhibitorKA2237" }, { - "@id": "bts:ClearCellMeningioma" + "@id": "bts:PI3K-alphaInhibitorMEN1611" }, { - "@id": "bts:Medulloblastoma;ClassicHistologicType;CNSWHOGrade4" + "@id": "bts:PI3K-betaInhibitorGSK2636771" }, { - "@id": "bts:AppearancesConsistentWithAlveolarSoftPartSarcoma" + "@id": "bts:PI3K-betaInhibitorSAR260301" }, { - "@id": "bts:DedifferentiatedLiposarcoma" + "@id": "bts:PI3K-deltaInhibitorAMG319" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" + "@id": "bts:PI3K-deltaInhibitorHMPL689" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:PI3K-deltaInhibitorINCB050465" }, { - "@id": "bts:TubularAdenocarcinoma" + "@id": "bts:PI3K-deltaInhibitorPWT143" }, { - "@id": "bts:Rhabdomyosarcoma;MostLikelyAnEmbryonalCarcinoma" + "@id": "bts:PI3K-deltaInhibitorSHC014748M" }, { - "@id": "bts:Adenocarcinoma;NOS" + "@id": "bts:PI3K-deltaInhibitorYY-20394" }, { - "@id": "bts:PleuropulmonaryBlastoma" + "@id": "bts:PI3K-gammaInhibitorIPI-549" }, { - "@id": "bts:BasaloidSquamousCellCarcinoma" + "@id": "bts:PI3K/BETInhibitorLY294002" }, { - "@id": "bts:Oligodendroglioma;Anaplastic;NOS" + "@id": "bts:PI3K/mTORKinaseInhibitorDS-7423" }, { - "@id": "bts:PilocyticAstrocytoma;WHOGrade1" + "@id": "bts:PI3K/mTORKinaseInhibitorPF-04691502" }, { - "@id": "bts:NotApplicable" + "@id": "bts:PI3K/mTORKinaseInhibitorVS-5584" }, { - "@id": "bts:AbdominalFibromatosis" + "@id": "bts:PI3K/mTORKinaseInhibitorWXFL10030390" }, { - "@id": "bts:Hamartoma" + "@id": "bts:PI3K/mTOR/ALK-1/DNA-PKInhibitorP7170" }, { - "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:PI3K/mTORC1/mTORC2InhibitorDCBCI0901" }, { - "@id": "bts:ChoroidPlexusPapilloma;NOS;ChoroidPlexusTumors" + "@id": "bts:PI3Ka/mTORInhibitorPKI-179" }, { - "@id": "bts:BurkittLymphoma;NOS" + "@id": "bts:PI3KalphaInhibitorAZD8835" }, { - "@id": "bts:LymphoepithelialCarcinoma" + "@id": "bts:PI3KbetaInhibitorAZD8186" }, { - "@id": "bts:Bronchiolo-AlveolarCarcinoma;Non-Mucinous" + "@id": "bts:PI3KdeltaInhibitorGS-9901" }, { - "@id": "bts:KidneyClearCellRenalCarcinoma" + "@id": "bts:Pibenzimol" }, { - "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma" + "@id": "bts:Pibrozelesin" }, { - "@id": "bts:AdenocarcinomaInSituInAdenomatousPolyp" + "@id": "bts:PibrozelesinHydrobromide" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant" + "@id": "bts:Picibanil" }, { - "@id": "bts:SmallBlueCellTumor.FavorMedulloblastoma" + "@id": "bts:Picoplatin" }, { - "@id": "bts:BLymphoblasticLeukemia/Lymphoma;NOS" + "@id": "bts:PicrasinosideH" }, { - "@id": "bts:EmbryonalTumorWithMulti-LayeredRosettes" + "@id": "bts:Picropodophyllin" }, { - "@id": "bts:ChronicEosinophilicLeukemia" + "@id": "bts:Pictilisib" }, { - "@id": "bts:MixedGlioma" + "@id": "bts:PictilisibBismesylate" }, { - "@id": "bts:BasalCellAdenocarcinoma" + "@id": "bts:Pidilizumab" }, { - "@id": "bts:OlfactoryNeuroblastoma" + "@id": "bts:Pilaralisib" }, { - "@id": "bts:TransitionalCellCarcinoma;NOS" + "@id": "bts:PIMKinaseInhibitorLGH447" }, { - "@id": "bts:ClearCellSarcoma;NOS" + "@id": "bts:PIMKinaseInhibitorSGI-1776" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma;High-Grade" + "@id": "bts:PIMKinaseInhibitorTP-3654" }, { - "@id": "bts:AngiocentricGlioma" + "@id": "bts:PIM/FLT3KinaseInhibitorSEL24" }, { - "@id": "bts:DiffuseMidlineGlioma;H3K27Altered;WHOGrade4" + "@id": "bts:Pimasertib" }, { - "@id": "bts:Osteoblastoma;NOS" + "@id": "bts:Pimitespib" }, { - "@id": "bts:MalignantNeoplasmWithRhabdomyoblasticDifferentiation;HighGrade" + "@id": "bts:Pimurutamab" }, { - "@id": "bts:MyxopapillaryEpendymoma(CNSWHOGradeII)" + "@id": "bts:PinatuzumabVedotin" }, { - "@id": "bts:MelanomaInSitu" + "@id": "bts:Pingyangmycin" }, { - "@id": "bts:SecretoryCarcinoma" + "@id": "bts:Pinometostat" }, { - "@id": "bts:PilocyticAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:Pioglitazone" }, { - "@id": "bts:Rhabdomyosarcoma;FavorAlveolarType" + "@id": "bts:PioglitazoneHydrochloride" }, { - "@id": "bts:Adenocarcinoma;MetastaticNOS" + "@id": "bts:Pipendoxifene" }, { - "@id": "bts:Fibrosarcoma;NOS" + "@id": "bts:Piperazinedione" }, { - "@id": "bts:Glioblastoma" + "@id": "bts:PiperineExtract(Standardized)" }, { - "@id": "bts:AtypicalChoroidPlexusPapilloma;ChoroidPlexusTumors" + "@id": "bts:Pipobroman" }, { - "@id": "bts:Ganglioneuroma;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:Piposulfan" }, { - "@id": "bts:DesmoplasticMelanoma;NOS" + "@id": "bts:Pirarubicin" }, { - "@id": "bts:ChoroidPlexusCarcinoma" + "@id": "bts:PirarubicinHydrochloride" }, { - "@id": "bts:SoftTissueTumor;Benign" + "@id": "bts:Pirfenidone" }, { - "@id": "bts:Medulloblastoma;NOS" + "@id": "bts:Piritrexim" }, { - "@id": "bts:Glioblastoma;NOS;Medulloblastoma;NOS" + "@id": "bts:PiritreximIsethionate" }, { - "@id": "bts:ResidualAstrocytoma" + "@id": "bts:Pirotinib" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(V;11q23);MLLRearranged" + "@id": "bts:Piroxantrone" }, { - "@id": "bts:ExtraAdrenalParaganglioma" + "@id": "bts:PiroxantroneHydrochloride" }, { - "@id": "bts:MucoepidermoidCarcinoma" + "@id": "bts:Pixantrone" }, { - "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" + "@id": "bts:PixantroneDimaleate" }, { - "@id": "bts:ChoroidPlexusPapilloma;NOS" + "@id": "bts:Pixatimod" }, { - "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:PKARegulatorySubunitRIalphaMixed-BackboneAntisenseOligonucleotideGEM231" }, { - "@id": "bts:B-LymphoblasticLeukemia/Lymphoma;NOS" + "@id": "bts:PKC-alphaAntisenseOligodeoxynucleotideISIS3521" }, { - "@id": "bts:HodgkinLymphoma;NodularSclerosis;NOS" + "@id": "bts:PKC-betaInhibitorMS-553" }, { - "@id": "bts:Fibroma" + "@id": "bts:Placebo" }, { - "@id": "bts:Craniopharyngioma;NOS;AdamantinomatousCraniopharyngioma" + "@id": "bts:PladienolideDerivativeE7107" }, { - "@id": "bts:T-Cell/HistiocyteRichLargeB-CellLymphoma" + "@id": "bts:Plamotamab" }, { - "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade4" + "@id": "bts:PlasmidDNAVaccinepING-hHER3FL" }, { - "@id": "bts:AcuteErythroidLeukemia" + "@id": "bts:Platinum" }, { - "@id": "bts:Glioma;HistologicallyLowGrade" + "@id": "bts:PlatinumAcetylacetonate-TitaniumDioxideNanoparticles" }, { - "@id": "bts:MucousAdenocarcinoma" + "@id": "bts:PlatinumCompound" }, { - "@id": "bts:Glioma;Malignant;Ganglioglioma;GlioneuronalAndNeuronalTumors" + "@id": "bts:Plevitrexed" }, { - "@id": "bts:NodularMelanoma" + "@id": "bts:Plicamycin" }, { - "@id": "bts:SynovialSarcoma;Biphasic" + "@id": "bts:Plinabulin" }, { - "@id": "bts:Neoplasm;Metastatic" + "@id": "bts:Plitidepsin" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:Plk1InhibitorBI2536" }, { - "@id": "bts:Thymoma;NOS" + "@id": "bts:PLK1InhibitorCYC140" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;PosteriorFossaEpendymoma;GroupPFA" + "@id": "bts:PLK1InhibitorTAK-960" }, { - "@id": "bts:Desmoplastic/NodularMedulloblastoma" + "@id": "bts:Plocabulin" }, { - "@id": "bts:PapillaryGlioneuronalTumor" + "@id": "bts:Plozalizumab" }, { - "@id": "bts:MixedPhenotypeAcuteLeukemia;T/Myeloid;NOS" + "@id": "bts:PNGVL4a-CRT-E6E7L2DNAVaccine" }, { - "@id": "bts:Cholangiocarcinoma" + "@id": "bts:PNGVL4a-Sig/E7(detox)/HSP70DNAandHPV16L2/E6/E7FusionProteinTA-CINVaccinePVX-2" }, { - "@id": "bts:Astroblastoma;MN1-Altered.HistologicallyHigh-Grade" + "@id": "bts:PolIInhibitorCX5461" }, { - "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated;WithHeterologousElements" + "@id": "bts:PolatuzumabVedotin" }, { - "@id": "bts:Glioma;Malignant;High-GradeGlioma;Infant-TypeHemisphericGlioma" + "@id": "bts:Polidocanol" }, { - "@id": "bts:JuvenileMyelomonocyticLeukemia;NOS" + "@id": "bts:Poliglusam" }, { - "@id": "bts:EmbryonalNeoplasmWithINI-1LossByImmunohistochemistry" + "@id": "bts:Polo-likeKinase1InhibitorGSK461364" }, { - "@id": "bts:MyeloidLeukemiaWithMyelodysplasia-RelatedChanges" + "@id": "bts:Polo-likeKinase1InhibitorMK1496" }, { - "@id": "bts:PrimaryCutaneousFollicleCenterLymphoma" + "@id": "bts:Polo-likeKinase1InhibitorNMS-1286937" }, { - "@id": "bts:ChoroidPlexusCarcinoma;WHOGrade3" + "@id": "bts:Polo-likeKinase4InhibitorCFI-400945Fumarate" }, { - "@id": "bts:InfiltratingDuctCarcinomaNOS" + "@id": "bts:Poly-alendronateDextran-GuanidineConjugate" }, { - "@id": "bts:TLymphoblasticLeukemia/Lymphoma" + "@id": "bts:Poly-gammaGlutamicAcid" }, { - "@id": "bts:Glioma;Malignant;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:PolyamineAnalogSL11093" }, { - "@id": "bts:MixedGermCellTumor;MyelodysplasticSyndromeWithExcessBlasts" + "@id": "bts:PolyamineAnaloguePG11047" }, { - "@id": "bts:ClearCellAdenocarcinoma;NOS" + "@id": "bts:PolyamineAnalogueSBP-101" }, { - "@id": "bts:CutaneousT-CellLymphoma;NOS" + "@id": "bts:PolyamineTransportInhibitorAMXT-1501Dicaprate" }, { - "@id": "bts:Germinoma" + "@id": "bts:Polyandrol" }, { - "@id": "bts:Neoplasm;Malignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:PolyethyleneGlycolRecombinantEndostatin" }, { - "@id": "bts:MeningealMelanocytoma" + "@id": "bts:Polyethyleneglycol-7-ethyl-10-hydroxycamptothecinDFP-13318" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:Polymer-conjugatedIL-15ReceptorAgonistNKTR-255" }, { - "@id": "bts:AcutePromyelocyticLeukemia;T(15;17)(Q22;Q11-12)" + "@id": "bts:Polymer-encapsulatedLuteolinNanoparticle" }, { - "@id": "bts:AlveolarSoftPartSarcoma" + "@id": "bts:PolymericCamptothecinProdrugXMT-1001" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:PolypodiumleucotomosExtract" }, { - "@id": "bts:MixedEpithelioidAndSpindleCellMelanoma" + "@id": "bts:Polysaccharide-K" }, { - "@id": "bts:CNSEmbryonalTumor;NOS;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" + "@id": "bts:PolysialicAcid" }, { - "@id": "bts:MalignantTumor;SpindleCellType" + "@id": "bts:PolyunsaturatedFattyAcid" }, { - "@id": "bts:Glioma;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:PolyvalentMelanomaVaccine" }, { - "@id": "bts:Glioma;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:Pomalidomide" }, { - "@id": "bts:EndometrioidCarcinoma;NOS" + "@id": "bts:PomegranateJuice" }, { - "@id": "bts:LungSquamousCellCarcinoma;NOS" + "@id": "bts:PomegranateLiquidExtract" }, { - "@id": "bts:PapillaryUrothelialCarcinoma;Non-Invasive" + "@id": "bts:Ponatinib" }, { - "@id": "bts:Neuroblastoma;UndifferentiatedType" + "@id": "bts:PonatinibHydrochloride" }, { - "@id": "bts:PeriostealOsteosarcoma" + "@id": "bts:PorcupineInhibitorCGX1321" }, { - "@id": "bts:MixedPhenotypeAcuteLeukemia;B/Myeloid;NOS" + "@id": "bts:PorcupineInhibitorETC-1922159" }, { - "@id": "bts:InflammatoryCarcinoma" + "@id": "bts:PorcupineInhibitorRXC004" }, { - "@id": "bts:Glioblastoma;NOS" + "@id": "bts:PorcupineInhibitorWNT974" }, { - "@id": "bts:Carcinoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:PorcupineInhibitorXNW7201" }, { - "@id": "bts:SquamousCellCarcinoma;NOS" + "@id": "bts:PorfimerSodium" }, { - "@id": "bts:HypocellularLowGradeLesion" + "@id": "bts:Porfiromycin" }, { - "@id": "bts:GlioblastomaMultiforme" + "@id": "bts:Poziotinib" }, { - "@id": "bts:Pancreas-UndifferentiatedCarcinoma" + "@id": "bts:PPARAlphaAntagonistTPST-1120" }, { - "@id": "bts:DifferentiatingNeuroblastoma" + "@id": "bts:PR1LeukemiaPeptideVaccine" }, { - "@id": "bts:MyxoidSpindleCellTumor" + "@id": "bts:Pracinostat" }, { - "@id": "bts:MerkelCellTumor" + "@id": "bts:Pralatrexate" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS;CNSSarcoma;CNSSarcoma;NOSOrNEC" + "@id": "bts:Pralsetinib" }, { - "@id": "bts:Hemangioma;NOS" + "@id": "bts:PraluzatamabRavtansine" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithAbnormalMarrowEosinophils" + "@id": "bts:PRAME-targetingT-cellReceptor/InducibleCaspase9BPX-701" }, { - "@id": "bts:WellDifferentiatedNeuroendocrinceTumor;Grade1" + "@id": "bts:PravastatinSodium" }, { - "@id": "bts:Ganglioglioma;Anaplastic" + "@id": "bts:Prednimustine" }, { - "@id": "bts:EpendymomaWHOGrade2" + "@id": "bts:Prednisolone" }, { - "@id": "bts:SynovialSarcoma;NOS" + "@id": "bts:PrednisoloneAcetate" }, { - "@id": "bts:ThymicCarcinoma;NOS" + "@id": "bts:PrednisoloneSodiumPhosphate" }, { - "@id": "bts:TumorCells;Malignant" + "@id": "bts:Prednisone" }, { - "@id": "bts:PilomyxoidAstrocytoma" + "@id": "bts:Prexasertib" }, { - "@id": "bts:PapillaryCarcinoma;ColumnarCell" + "@id": "bts:Prexigebersen" }, { - "@id": "bts:PlexiformFibrohistiocyticTumor" + "@id": "bts:PRIMA-1AnalogAPR-246" }, { - "@id": "bts:Astrocytoma;NOS;AngiocentricGlioma;Low-GradeGlioma" + "@id": "bts:PrimeCancerVaccineMVA-BN-CV301" }, { - "@id": "bts:Carcinoma;Undifferentiated;NOS" + "@id": "bts:Prinomastat" }, { - "@id": "bts:DermatofibrosarcomaProtuberans;NOS" + "@id": "bts:PRMT1InhibitorGSK3368715" }, { - "@id": "bts:HighGradeGliomaWithNecrosis;WHOGrade4" + "@id": "bts:PRMT5InhibitorJNJ-64619178" }, { - "@id": "bts:Infiltratingductularcarcinoma" + "@id": "bts:PRMT5InhibitorPRT811" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges;JuvenileMyelomonocyticLeukemia;NOS" + "@id": "bts:ProapoptoticSulindacAnalogCP-461" }, { - "@id": "bts:InfiltratingDuctAndMucinousCarcinoma" + "@id": "bts:Procarbazine" }, { - "@id": "bts:IntraductalPapillaryCarcinoma" + "@id": "bts:ProcarbazineHydrochloride" }, { - "@id": "bts:SerousSurfacePapillaryCarcinoma" + "@id": "bts:ProcaspaseActivatingCompound-1VO-100" }, { - "@id": "bts:InvasiveCarcinoma" + "@id": "bts:ProgestationalIUD" }, { - "@id": "bts:HighGradeMalignantEpithelioidNeoplasm" + "@id": "bts:Prohibitin-TargetingPeptide1" }, { - "@id": "bts:FavorPilocyticAstrocytomaWithIncreasedProliferationIndices" + "@id": "bts:Prolgolimab" }, { - "@id": "bts:Medulloblastoma;ClassicMorphology;CNSWHOGrade4;NON-WNT/NON-SHH;Group4SubtypeByMethylation" + "@id": "bts:ProstaglandinE2EP4ReceptorInhibitorAN0025" }, { - "@id": "bts:CompositeHodgkinAndNon-HodgkinLymphoma" + "@id": "bts:ProstaglandinE2EP4ReceptorInhibitorE7046" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT;NOSOrNEC" + "@id": "bts:ProstateCancerVaccineONY-P1" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-TYR" + "@id": "bts:ProstateHealthCocktailDietarySupplement" }, { - "@id": "bts:PrimaryCutaneousCD30PositiveT-CellLymphoproliferativeDisorder" + "@id": "bts:ProstaticAcidPhosphatase-SargramostimFusionProteinPA2024" }, { - "@id": "bts:Hemangioendothelioma;NOS" + "@id": "bts:Protease-activatedAnti-PD-L1AntibodyProdrugCX-072" }, { - "@id": "bts:HypercellularLesionWithAtypia" + "@id": "bts:ProteinArginineMethyltransferase5InhibitorGSK3326595" }, { - "@id": "bts:EmbryonalCarcinoma;NOS" + "@id": "bts:ProteinArginineMethyltransferase5InhibitorPF-06939999" }, { - "@id": "bts:Subependymoma;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:ProteinArginineMethyltransferase5InhibitorPRT543" }, { - "@id": "bts:GermCellTumor;Nonseminomatous" + "@id": "bts:ProteinKinaseCInhibitorIDE196" }, { - "@id": "bts:AdrenalCorticalCarcinoma" + "@id": "bts:ProteinPhosphatase2AInhibitorLB-100" }, { - "@id": "bts:OlfactoryNeurocytoma" + "@id": "bts:ProteinStabilizedLiposomalDocetaxelNanoparticles" }, { - "@id": "bts:LargeCellMedulloblastoma;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:ProteinTyrosineKinase2InhibitorIN10018" }, { - "@id": "bts:NuclearProteinInTestis(NUT)-AssociatedCarcinoma" + "@id": "bts:Proxalutamide" }, { - "@id": "bts:Epithelial-MyoepithelialCarcinoma" + "@id": "bts:PSA/IL-2/GM-CSFVaccine" }, { - "@id": "bts:SquamousCellCarcinoma;Keratinizing;NOS" + "@id": "bts:PSA/PSMADNAPlasmidINO-5150" }, { - "@id": "bts:Ganglioneuroma;Other;Schwannoma" + "@id": "bts:Pseudoisocytidine" }, { - "@id": "bts:GlomusTumor;Malignant" + "@id": "bts:PSMA-targetedDocetaxelNanoparticlesBIND-014" }, { - "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:PSMA-targetedTubulysinB-containingConjugateEC1169" }, { - "@id": "bts:MalignantLymphoma;Non-Hodgkin;NOS" + "@id": "bts:PSMA/CD3Tri-specificT-cellActivatingConstructHPN424" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma;NOS;CNSEmbryonalTumor;NOS" + "@id": "bts:PTEF-b/CDK9InhibitorBAY1251152" }, { - "@id": "bts:TenosynovialGiantCellTumor;NOS" + "@id": "bts:Pterostilbene" }, { - "@id": "bts:HistologicallyLow-GradeGlioma" + "@id": "bts:Pumitepa" }, { - "@id": "bts:Chordoma;NOS;Ganglioneuroblastoma" + "@id": "bts:Puquitinib" }, { - "@id": "bts:Ependymoma;NOS" + "@id": "bts:PuquitinibMesylate" }, { - "@id": "bts:InvasiveMammaryCarcinoma" + "@id": "bts:Puromycin" }, { - "@id": "bts:RhabdoidTumor;Malignant" + "@id": "bts:PuromycinHydrochloride" }, { - "@id": "bts:Medulloblastoma;ClassicHistology" + "@id": "bts:PV-10" }, { - "@id": "bts:AdenocarcinomaInVillousAdenoma" + "@id": "bts:PVAMicroporousHydrospheres/DoxorubicinHydrochloride" }, { - "@id": "bts:UndifferentiatedSarcoma" + "@id": "bts:Pyrazinamide" }, { - "@id": "bts:PapillaryThyroidCarcinoma" + "@id": "bts:Pyrazoloacridine" }, { - "@id": "bts:RenalCellAdenocarcinoma" + "@id": "bts:PyridylCyanoguanidineCHS828" }, { - "@id": "bts:HodgkinLymphoma;NOS" + "@id": "bts:Pyrotinib" }, { - "@id": "bts:MalignantHistiocytosis" + "@id": "bts:PyrotinibDimaleate" }, { - "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:Pyroxamide" }, { - "@id": "bts:SolidPseudopapillaryTumorOfOvary" + "@id": "bts:PyruvateKinaseInhibitorTLN-232" }, { - "@id": "bts:AstrocyticGlioma;HistologicallyLow-Grade;MostCompatibleWithPilocyticAstrocytoma" + "@id": "bts:PyruvateKinaseM2IsoformActivatorTP-1454" }, { - "@id": "bts:InflammatoryMyofibroblasticTumorWithAnAssociatedOdontogenicKeratocyst" + "@id": "bts:QilishengImmunoregulatoryOralSolution" }, { - "@id": "bts:Myofibromatosis" + "@id": "bts:QuadrivalentHumanPapillomavirus(types6;11;16;18)RecombinantVaccine" }, { - "@id": "bts:SmallRoundBlueCellTumor" + "@id": "bts:Quarfloxin" }, { - "@id": "bts:Meningioma;Atypical;CNSWHOGrade2" + "@id": "bts:QuinacrineHydrochloride" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;AdamantinomatousCraniopharyngioma;Craniopharyngioma" + "@id": "bts:Quinine" }, { - "@id": "bts:PilocyticAstrocytoma" + "@id": "bts:Quisinostat" }, { - "@id": "bts:LobularAndDuctalCarcinoma" + "@id": "bts:Quizartinib" }, { - "@id": "bts:Desmoplastic/NodularMedulloblastoma(HistologicallyDefined);CNSWHOGrade4" + "@id": "bts:R-(-)-GossypolAceticAcid" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumorWithRhabdomyoblasticDifferentiation" + "@id": "bts:Rabusertib" }, { - "@id": "bts:TumorCells;Malignant;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" + "@id": "bts:Racemetyrosine/Methoxsalen/Phenytoin/SirolimusSM-88" }, { - "@id": "bts:MalignantTumor" + "@id": "bts:Racotumomab" }, { - "@id": "bts:BrainTumor" + "@id": "bts:RAD51InhibitorCYT-0851" }, { - "@id": "bts:GastrointestinalStromalTumor;Benign" + "@id": "bts:Radgocitabine" }, { - "@id": "bts:RasmussenEncephalitis" + "@id": "bts:RadgocitabineHydrochloride" }, { - "@id": "bts:Medulloblastoma;NOS;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" + "@id": "bts:RadioactiveIodine" }, { - "@id": "bts:Adenocarcinoma;NOS;Glioblastoma;NOS" + "@id": "bts:RadiolabeledCC49" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor(Mpnst)" + "@id": "bts:RadiumRa223Dichloride" }, { - "@id": "bts:EmbryonalSarcoma" + "@id": "bts:RadiumRa224-labeledCalciumCarbonateMicroparticles" }, { - "@id": "bts:Neoplasm;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:RadixAngelicaeSinensis/RadixAstragaliHerbalSupplement" }, { - "@id": "bts:AnaplasticLargeCellLymphoma;T-CellAndNull-CellType" + "@id": "bts:RadotinibHydrochloride" }, { - "@id": "bts:Teratoma;NOS" + "@id": "bts:RafKinaseInhibitorHM95573" }, { - "@id": "bts:PleomorphicXanthoastrocytoma;NOS" + "@id": "bts:RAFKinaseInhibitorL-779450" }, { - "@id": "bts:Infiltratingductandlobularcarcinoma" + "@id": "bts:RAFKinaseInhibitorXL281" }, { - "@id": "bts:SclerosingStromalTumor" + "@id": "bts:Ragifilimab" }, { - "@id": "bts:TumorCells;UncertainWhetherBenignOrMalignant" + "@id": "bts:RalanitenAcetate" }, { - "@id": "bts:AcuteMyeloidLeukemia;NOS;JuvenileMyelomonocyticLeukemia;NOS" + "@id": "bts:RalimetinibMesylate" }, { - "@id": "bts:LobularCarcinoma;NOS" + "@id": "bts:Raloxifene" }, { - "@id": "bts:Schwannoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:RaloxifeneHydrochloride" }, { - "@id": "bts:Sarcoma;NOS" + "@id": "bts:Raltitrexed" }, { - "@id": "bts:CNSEmbryonalTumorWithRhabdoidFeatures" + "@id": "bts:Ramucirumab" }, { - "@id": "bts:GlialNeoplasm;Astrocytoma" + "@id": "bts:Ranibizumab" }, { - "@id": "bts:Pancreas-AdenosquamousCarcinoma" + "@id": "bts:Ranimustine" }, { - "@id": "bts:MesenchymalLesion" + "@id": "bts:Ranolazine" }, { - "@id": "bts:SerousAdenocarcinoma;NOS" + "@id": "bts:Ranpirnase" }, { - "@id": "bts:Hepatoblastoma;NOS" + "@id": "bts:RARalphaAgonistIRX5183" }, { - "@id": "bts:Astrocytoma;NOS;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:RasInhibitor" }, { - "@id": "bts:SexCord-GonadalStromalTumor;NOS" + "@id": "bts:RasPeptideASP" }, { - "@id": "bts:AdenoidCysticCarcinoma" + "@id": "bts:RasPeptideCYS" }, { - "@id": "bts:EmbryonalTumor" + "@id": "bts:RasPeptideVAL" }, { - "@id": "bts:AcuteMyeloidLeukemia;T(8;21)(Q22;Q22)" + "@id": "bts:Razoxane" }, { - "@id": "bts:SpindledAndEpithelioidTumorWithFeaturesOfIntracranialMesenchymalTumor" + "@id": "bts:Realgar-IndigonaturalisFormulation" }, { - "@id": "bts:Cavernoma" + "@id": "bts:RebastinibTosylate" }, { - "@id": "bts:MalignantTumor;SmallCellType" + "@id": "bts:Rebeccamycin" }, { - "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSGerminoma" + "@id": "bts:Rebimastat" }, { - "@id": "bts:LowGradeNeoplasm.FeaturesSuggestiveOfPilocyticAstrocytoma." + "@id": "bts:ReceptorTyrosineKinaseInhibitorR1530" }, { - "@id": "bts:Neoplasm;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:RecombinantAdenovirus-p53SCH-58500" }, { - "@id": "bts:SerousCarcinoma;NOS" + "@id": "bts:RecombinantAnti-WT1ImmunotherapeuticGSK2302024A" }, { - "@id": "bts:MetastaticSecondaryTumors" + "@id": "bts:RecombinantBacterialMinicellsVAX014" }, { - "@id": "bts:YolkSacTumor" + "@id": "bts:RecombinantBispecificSingle-ChainAntibodyrM28" }, { - "@id": "bts:MorphologicallyConsistentWithPilocyticAstrocytoma;WHOGrade1" + "@id": "bts:RecombinantCD40-Ligand" }, { - "@id": "bts:NeuroendocrineTumor;NOS" + "@id": "bts:RecombinantErwiniaasparaginaseJZP-458" }, { - "@id": "bts:MixedGermCellTumor;AcuteMegakaryoblasticLeukemia" + "@id": "bts:RecombinantErythropoietin" }, { - "@id": "bts:JuvenileMyelomonocyticLeukemia" + "@id": "bts:RecombinantFasLigand" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithT(9;11)(P22;Q23);MLLT3-MLL" + "@id": "bts:RecombinantFractalkine" }, { - "@id": "bts:Glioma;Malignant;High-GradeGlioma;PleomorphicXanthoastrocytoma" + "@id": "bts:RecombinantGranulocyte-MacrophageColony-StimulatingFactor" }, { - "@id": "bts:PapillaryGlioneuronalTumor;WHOGrade1" + "@id": "bts:RecombinantHuman6Ckine" }, { - "@id": "bts:CentralNeuroblastoma" + "@id": "bts:RecombinantHumanAdenovirusType5H101" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor" + "@id": "bts:RecombinantHumanAngiotensinConvertingEnzyme2APN01" }, { - "@id": "bts:MixedAdenocarcinomaAndSquamousCellCarcinoma;Pancreatobiliary-TypeCarcinoma" + "@id": "bts:RecombinantHumanApolipoprotein(a)KringleVMG1102" }, { - "@id": "bts:SubcutaneousPanniculitis-LikeT-CellLymphoma" + "@id": "bts:RecombinantHumanEGF-rP64K/MontanideISA51Vaccine" }, { - "@id": "bts:MyofibroblasticTumor" + "@id": "bts:RecombinantHumanEndostatin" }, { - "@id": "bts:Nephroblastoma;NOS" + "@id": "bts:RecombinantHumanHsp110-gp100ChaperoneComplexVaccine" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:RecombinantHumanPapillomavirus11-valentVaccine" }, { - "@id": "bts:MalignantMelanoma;NOS;MeningealMelanocyticNeoplasms(IncludesMelanoma);Other" + "@id": "bts:RecombinantHumanPapillomavirusBivalentVaccine" }, { - "@id": "bts:Carcinoma;Metastatic;NOS" + "@id": "bts:RecombinantHumanPapillomavirusNonavalentVaccine" }, { - "@id": "bts:FollicularCarcinoma;MinimallyInvasive" + "@id": "bts:RecombinantHumanPlasminogenKringle5DomainABT828" }, { - "@id": "bts:Angiomyofibroblastoma" + "@id": "bts:RecombinantHumanTRAIL-TrimerFusionProteinSCB-313" }, { - "@id": "bts:ClassicMedulloblastoma;CNSWHOGrade4" + "@id": "bts:RecombinantHumanizedAnti-HER-2BispecificMonoclonalAntibodyMBS301" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" + "@id": "bts:RecombinantInterferon" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-MYC" + "@id": "bts:RecombinantInterferonAlfa" }, { - "@id": "bts:Astroblastoma" + "@id": "bts:RecombinantInterferonAlfa-1b" }, { - "@id": "bts:MeningothelialMeningioma;Meningioma;Other" + "@id": "bts:RecombinantInterferonAlfa-2a" }, { - "@id": "bts:PoorlyDifferentiatedChordoma" + "@id": "bts:RecombinantInterferonAlfa-2b" }, { - "@id": "bts:ChronicMyelogenousLeukemia" + "@id": "bts:RecombinantInterferonAlpha2b-likeProtein" }, { - "@id": "bts:PleomorphicSarcoma" + "@id": "bts:RecombinantInterferonBeta" }, { - "@id": "bts:SupratentorialEpendymomaCNSWHOGrade3" + "@id": "bts:RecombinantInterferonGamma" }, { - "@id": "bts:LeydigCellTumor;NOS" + "@id": "bts:RecombinantInterleukin-12" }, { - "@id": "bts:Adenosarcoma" + "@id": "bts:RecombinantInterleukin-13" }, { - "@id": "bts:PigmentedDermatofibrosarcomaProtuberans" + "@id": "bts:RecombinantInterleukin-18" }, { - "@id": "bts:Astrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:RecombinantInterleukin-2" }, { - "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:RecombinantInterleukin-6" }, { - "@id": "bts:Astrocytoma;NOS;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:RecombinantKSAGlycoproteinCO17-1A" }, { - "@id": "bts:Myxofibrosarcoma" + "@id": "bts:RecombinantLeukocyteInterleukin" }, { - "@id": "bts:PrecursorT-CellLymphoblasticLeukemia" + "@id": "bts:RecombinantLeukoregulin" }, { - "@id": "bts:Neurocytoma" + "@id": "bts:RecombinantLuteinizingHormone" }, { - "@id": "bts:AdrenalCorticalTumor;NOS" + "@id": "bts:RecombinantMacrophageColony-StimulatingFactor" }, { - "@id": "bts:Neoplasm;Malignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:RecombinantMAGE-3.1Antigen" }, { - "@id": "bts:AcuteMyeloidLeukemia(Megakaryoblastic)WithT(1;22)(P13;Q13);RBM15-MKL1" + "@id": "bts:RecombinantMIP1-alphaVariantECI301" }, { - "@id": "bts:Neoplasm;Malignant;CNSNeuroblastoma;FOXR2-Activated;OtherCNSEmbryonalTumors" + "@id": "bts:RecombinantModifiedVacciniaAnkara-5T4Vaccine" }, { - "@id": "bts:Infiltratingductandmucinouscarcinoma" + "@id": "bts:RecombinantOncolyticPoliovirusPVS-RIPO" }, { - "@id": "bts:AdenocarcinomaInSitu;NOS" + "@id": "bts:RecombinantPlateletFactor4" }, { - "@id": "bts:MucinousAdenocarcinoma" + "@id": "bts:RecombinantPRAMEProteinPlusAS15AdjuvantGSK2302025A" }, { - "@id": "bts:Retinoblastoma;NOS" + "@id": "bts:RecombinantSaccharomycesCerevisia-CEA(610D)-ExpressingVaccineGI-6207" }, { - "@id": "bts:AnaplasticEpendymoma" + "@id": "bts:RecombinantSuper-compoundInterferon" }, { - "@id": "bts:GermCellTumor;Nonseminomatous;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" + "@id": "bts:RecombinantThyroglobulin" }, { - "@id": "bts:AcuteMonoblasticAndMonocyticLeukemia" + "@id": "bts:RecombinantThyrotropinAlfa" }, { - "@id": "bts:Hemangioblastoma;CNSWHOGrade1" + "@id": "bts:RecombinantTransformingGrowthFactor-Beta" }, { - "@id": "bts:AlveolarRhabdomyosarcoma" + "@id": "bts:RecombinantTransformingGrowthFactor-Beta-2" }, { - "@id": "bts:MedullaryCarcinoma;NOS" + "@id": "bts:RecombinantTumorNecrosisFactor-Alpha" }, { - "@id": "bts:AdultGranulosaCellTumorOfTestis" + "@id": "bts:RecombinantTyrosinase-RelatedProtein-2" }, { - "@id": "bts:Medulloblastoma;WHOGrade4" + "@id": "bts:RecombinantVesicularStomatitisVirus-expressingHumanInterferonBetaandSodium-IodideSymporter" }, { - "@id": "bts:Craniopharyngioma;Adamantinomatous" + "@id": "bts:Redaporfin" }, { - "@id": "bts:HighGradeMalignantPeripheralNerveSheathTumorWithHeterologousRhabdomyoblasticDifferentiation(MalignantTritonTumor)" + "@id": "bts:Refametinib" }, { - "@id": "bts:SpindleCellRhabdomyosaroma" + "@id": "bts:Regorafenib" }, { - "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant" + "@id": "bts:Relacorilant" }, { - "@id": "bts:EpithelioidSarcoma;NOS" + "@id": "bts:Relatlimab" }, { - "@id": "bts:MyoepithelialCarcinoma" + "@id": "bts:Relugolix" }, { - "@id": "bts:MultipleMyeloma" + "@id": "bts:Remetinostat" }, { - "@id": "bts:Triple-NegativeBreastCarcinoma" + "@id": "bts:RenalCellCarcinomaPeptidesVaccineIMA901" }, { - "@id": "bts:HepatocellularCarcinoma;NOS;Nephroblastoma;NOS" + "@id": "bts:Reparixin" }, { - "@id": "bts:Neuroblastoma;SchwannianStromaPoor;PoorlyDifferentiated;LowMKI;FavorableHistology" + "@id": "bts:Repotrectinib" }, { - "@id": "bts:SertoliCellTumor;NOS" + "@id": "bts:Resiquimod" }, { - "@id": "bts:OssifyingFibroma" + "@id": "bts:ResiquimodTopicalGel" }, { - "@id": "bts:PleomorphicLiposarcoma" + "@id": "bts:ResistantStarch" }, { - "@id": "bts:AmelanoticMelanoma" + "@id": "bts:Resminostat" }, { - "@id": "bts:Liposarcoma;NOS" + "@id": "bts:Resveratrol" }, { - "@id": "bts:Non-GerminomatousGermCellTumor" + "@id": "bts:ResveratrolFormulationSRT501" }, { - "@id": "bts:LactotrophAdenoma" + "@id": "bts:RETInhibitorDS-5010" }, { - "@id": "bts:TransientAbnormalMyelopoiesis" + "@id": "bts:RETMutation/FusionInhibitorBLU-667" }, { - "@id": "bts:FavorPosteriorFossaEpendymoma;WHOGRADE3" + "@id": "bts:RET/SRCInhibitorTPX-0046" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:Retaspimycin" }, { - "@id": "bts:CarcinomaInSitu;NOS" + "@id": "bts:RetaspimycinHydrochloride" }, { - "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:Retelliptine" }, { - "@id": "bts:Ependymoma;Anaplastic" + "@id": "bts:Retifanlimab" }, { - "@id": "bts:GlialNeoplasm;FavorPilocyticAstrocytoma" + "@id": "bts:RetinoicAcidAgentRo16-9100" }, { - "@id": "bts:GastrointestinalStromalTumor;NOS" + "@id": "bts:Retinoid9cUAB30" }, { - "@id": "bts:SerousCystadenocarcinoma;NOS" + "@id": "bts:Retinol" }, { - "@id": "bts:PapillaryLesionWithAtypical/HighGradeFeatures" + "@id": "bts:RetinylAcetate" }, { - "@id": "bts:SpinalEpendymoma;WHOGrade2" + "@id": "bts:RetinylPalmitate" }, { - "@id": "bts:DuctalCarcinomaInSitu;NOS" + "@id": "bts:RetrovectorEncodingMutantAnti-CyclinG1" }, { - "@id": "bts:InfiltratingDuctalCarcinoma" + "@id": "bts:Revdofilimab" }, { - "@id": "bts:MixedTypeRhabdomyosarcoma" + "@id": "bts:RexinoidNRX194204" }, { - "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Mutant" + "@id": "bts:Rezivertinib" }, { - "@id": "bts:PrecursorB-CellAcuteLymphoblasticLeukemiaWithHyperdiploidy" + "@id": "bts:RFT5-dgAImmunotoxinIMTOX25" }, { - "@id": "bts:MesenchymalChondrosarcoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:RheniumRe188BMEDA-labeledLiposomes" }, { - "@id": "bts:CribriformCarcinoma;NOS" + "@id": "bts:RheniumRe-186HydroxyethylideneDiphosphonate" }, { - "@id": "bts:MyxopapillaryEpendymoma;Anaplastic" + "@id": "bts:RheniumRe-188EthiodizedOil" }, { - "@id": "bts:Ependymoma;Anaplastic;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:RheniumRe-188Etidronate" }, { - "@id": "bts:Astrocytoma;IDH-Mutant;WHOGrade2" + "@id": "bts:Rhizoxin" }, { - "@id": "bts:Meningioangiomatosis" + "@id": "bts:RhoCPeptideVaccineRV001V" }, { - "@id": "bts:AcuteMyeloidLeukemia;NOS;MyeloproliferativeNeoplasm;Unclassifiable" + "@id": "bts:Ribociclib" }, { - "@id": "bts:Endometrioidcarcinoma;NOS" + "@id": "bts:Ribociclib/Letrozole" }, { - "@id": "bts:AdenocarcinomaInSitu;Non-Mucinous" + "@id": "bts:RibonucleaseQBI-139" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group4" + "@id": "bts:Ribosome-InactivatingProteinCY503" }, { - "@id": "bts:PapillaryCarcinoma;FollicularVariant" + "@id": "bts:RibozymeRPI.4610" }, { - "@id": "bts:MetaplasticCarcinoma;NOS" + "@id": "bts:RiceBran" }, { - "@id": "bts:ChoroidPlexusCarcinoma;ChoroidPlexusTumors" + "@id": "bts:Ricolinostat" }, { - "@id": "bts:PoorlyDifferentiatedSertoli-LeydigCellTumorWithHeterologousRhabdomyosarcomatousDifferentiation" + "@id": "bts:Ridaforolimus" }, { - "@id": "bts:LowGradeGlioma" + "@id": "bts:Rigosertib" }, { - "@id": "bts:SexCordStromalTumorNOS" + "@id": "bts:RigosertibSodium" }, { - "@id": "bts:StromaPoor;PoorlyDifferentiatedNeuroblastomaWithLowMKI;FavorableHistology" + "@id": "bts:RilimogeneGalvacirepvec" }, { - "@id": "bts:ResidualLowGradeNeuroendocrineTumor(TypicalCarcinoid)" + "@id": "bts:RilimogeneGalvacirepvec/RilimogeneGlafolivec" }, { - "@id": "bts:MelanoticNeuroectodermalTumor" + "@id": "bts:RilimogeneGlafolivec" }, { - "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:Rilotumumab" }, { - "@id": "bts:Glioma;Malignant;AngiocentricGlioma;Low-GradeGlioma" + "@id": "bts:Rindopepimut" }, { - "@id": "bts:MalignantLymphoma;NOS" + "@id": "bts:Ripertamab" }, { - "@id": "bts:MedulloblastomaWHOGrade4" + "@id": "bts:RIPK1InhibitorGSK3145095" }, { - "@id": "bts:ChoroidPlexusPapillaryTumor" + "@id": "bts:Ripretinib" }, { - "@id": "bts:FollicularAdenocarcinoma;WellDifferentiated;Neuroblastoma;NOS" + "@id": "bts:RisperidoneFormulationinRumenicAcid" }, { - "@id": "bts:NeuroepithelialTumor" + "@id": "bts:Ritrosulfan" }, { - "@id": "bts:MyelodysplasticSyndromeWithMultilineageDysplasia" + "@id": "bts:Rituximab" }, { - "@id": "bts:PrimaryMediastinal(Thymic)LargeB-CellLymphoma" + "@id": "bts:RituximabandHyaluronidaseHuman" }, { - "@id": "bts:MastCellLeukemia" + "@id": "bts:RituximabConjugateCON-4619" }, { - "@id": "bts:Ganglioneuroblastoma" + "@id": "bts:Riviciclib" }, { - "@id": "bts:Pheochromocytoma;NOS" + "@id": "bts:Rivoceranib" }, { - "@id": "bts:PapillarySerousAdenocarcinoma" + "@id": "bts:RivoceranibMesylate" }, { - "@id": "bts:MixedGermCellTumor" + "@id": "bts:RNRInhibitorCOH29" }, { - "@id": "bts:LymphoidLeukemia;NOS" + "@id": "bts:Robatumumab" }, { - "@id": "bts:EpendymomaNOS" + "@id": "bts:Roblitinib" }, { - "@id": "bts:SmoothMuscleTumorOfUncertainMalignantPotential" + "@id": "bts:ROBO1-targetedBiCAR-NKTCells" }, { - "@id": "bts:CombinedSmallCell-LargeCarcinoma" + "@id": "bts:RocakinogeneSifuplasmid" }, { - "@id": "bts:SertoliLeydigCellTumor" + "@id": "bts:Rocapuldencel-T" }, { - "@id": "bts:AnaplasticLargeCellLymphoma;ALKPositive" + "@id": "bts:Rociletinib" }, { - "@id": "bts:Meningioma;Malignant" + "@id": "bts:Rodorubicin" }, { - "@id": "bts:RhabdoidTumor;NOS" + "@id": "bts:Roducitabine" }, { - "@id": "bts:MerkelCellCarcinoma" + "@id": "bts:Rofecoxib" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Meningioma;Other" + "@id": "bts:Roflumilast" }, { - "@id": "bts:Lymphoma;NOS" + "@id": "bts:Rogaratinib" }, { - "@id": "bts:Gangliocytoma;NOS" + "@id": "bts:Rogletimide" }, { - "@id": "bts:Glioblastoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:RolinsatamabTalirine" }, { - "@id": "bts:MucinousNon-CysticCarcinoma" + "@id": "bts:Romidepsin" }, { - "@id": "bts:MucinousCarcinoma" + "@id": "bts:Roneparstat" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:Roniciclib" }, { - "@id": "bts:Ganglioglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:RopeginterferonAlfa-2B" }, { - "@id": "bts:HighGradeCarcinosarcoma" + "@id": "bts:Ropidoxuridine" }, { - "@id": "bts:SubependymalGiantCellAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:Ropocamptide" }, { - "@id": "bts:SquamousCellCarcinoma;Metastatic;NOS" + "@id": "bts:Roquinimex" }, { - "@id": "bts:MyeloidLeukemiaAssociatedWithDownSyndrome" + "@id": "bts:RORgammaAgonistLYC-55716" }, { - "@id": "bts:MeningealMelanomatosis" + "@id": "bts:Rosabulin" }, { - "@id": "bts:NeuroepithelialTumorWithGlioneuronal-LikeFeatures" + "@id": "bts:RoseBengalSolutionPV-10" }, { - "@id": "bts:SquamousCellCarcinoma;LargeCell;Nonkeratinizing;NOS" + "@id": "bts:RosiglitazoneMaleate" }, { - "@id": "bts:Meningiomatosis;NOS" + "@id": "bts:Rosmantuzumab" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:Rosopatamab" }, { - "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" + "@id": "bts:Rosuvastatin" }, { - "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFA" + "@id": "bts:RovalpituzumabTesirine" }, { - "@id": "bts:CNSEmbryonalTumor;NOS" + "@id": "bts:RSK1-4InhibitorPMD-026" }, { - "@id": "bts:FavorAnaplasticEpendymoma" + "@id": "bts:Rubitecan" }, { - "@id": "bts:DiffuseGlioma" + "@id": "bts:Rucaparib" }, { - "@id": "bts:AdamantinomatousCraniopharyngioma(CNSWHOGrade1)" + "@id": "bts:RucaparibCamsylate" }, { - "@id": "bts:Medulloblastoma;ClassicVariant;WHOGrade4" + "@id": "bts:RucaparibPhosphate" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:RutheniumRu-106" }, { - "@id": "bts:GlioneuronalTumorWithFocalIncreasedAtypia" + "@id": "bts:Ruthenium-basedSmallMoleculeTherapeuticBOLD-100" }, { - "@id": "bts:HighGradeNeuroepithelialTumor" + "@id": "bts:Ruthenium-basedTransferrinTargetingAgentNKP-1339" }, { - "@id": "bts:SquamousCellCarcinoma;SmallCell;Nonkeratinizing" + "@id": "bts:Ruxolitinib" }, { - "@id": "bts:MixedPhenotypeAcuteLeukemiaWithT(V;11q23);MLLRearranged" + "@id": "bts:RuxolitinibPhosphate" }, { - "@id": "bts:AcuteMyeloidLeukemia;MinimalDifferentiation" + "@id": "bts:Ruxotemitide" }, { - "@id": "bts:FibrillaryAstrocytoma" + "@id": "bts:S-Adenosylmethionine" }, { - "@id": "bts:Chordoma;NOS" + "@id": "bts:S-equol" }, { - "@id": "bts:UndifferentiatedLeukemia" + "@id": "bts:S1PReceptorAgonistKRP203" }, { - "@id": "bts:Myofibroma" + "@id": "bts:Sabarubicin" }, { - "@id": "bts:Neoplasm;Malignant" + "@id": "bts:Sabatolimab" }, { - "@id": "bts:PleomorphicXanthoastrocytoma;NOS;Low-GradeGlioma" + "@id": "bts:SacituzumabGovitecan" }, { - "@id": "bts:InvasiveDuctalCarcinoma" + "@id": "bts:Sacubitril/Valsartan" }, { - "@id": "bts:SubependymalGiantCellAstrocytoma" + "@id": "bts:Safingol" }, { - "@id": "bts:EmbryonalRhabdomyosarcomaWithAnaplasticFeatures" + "@id": "bts:Sagopilone" }, { - "@id": "bts:High-GradeNeuroepithelialTumor" + "@id": "bts:Salirasib" }, { - "@id": "bts:LowGradeGlioneuronalTumor" + "@id": "bts:SalmonellaVNP20009" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:Sam68ModulatorCWP232291" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithoutMaturation" + "@id": "bts:Samalizumab" }, { - "@id": "bts:AdenocarcinomaWithMixedSubtypes" + "@id": "bts:SamariumSm153-DOTMP" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHyperdiploidy" + "@id": "bts:Samotolisib" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS" + "@id": "bts:SamrotamabVedotin" }, { - "@id": "bts:Hemangiosarcoma" + "@id": "bts:Samuraciclib" }, { - "@id": "bts:Paraganglioma;NOS" + "@id": "bts:Sapacitabine" }, { - "@id": "bts:Medulloblastoma;Nodular/DesmoplasticWithAnaplastic/LargeCellFeatures;Non-WNT/Non-SHH;WHOGrade4" + "@id": "bts:Sapanisertib" }, { - "@id": "bts:SignetRingCellCarcinoma" + "@id": "bts:Sapitinib" }, { - "@id": "bts:SpindleCellMelanoma;NOS" + "@id": "bts:Saracatinib" }, { - "@id": "bts:LobularAdenocarcinoma" + "@id": "bts:SaracatinibDifumarate" }, { - "@id": "bts:UndiagnosedSpindleCellTumor" + "@id": "bts:SarCNU" }, { - "@id": "bts:PilocyticAstrocytoma;WHOGrade1;KIAA1549-BRAFFusion" + "@id": "bts:Sardomozide" }, { - "@id": "bts:Meningioma" + "@id": "bts:Sargramostim" }, { - "@id": "bts:HepatosplenicT-CellLymphoma;PrecursorCellLymphoblasticLeukemia;NOS" + "@id": "bts:Sasanlimab" }, { - "@id": "bts:MesenchymalChondrosarcoma" + "@id": "bts:Satraplatin" }, { - "@id": "bts:AnaplasticGanglioglioma" + "@id": "bts:Savolitinib" }, { - "@id": "bts:Osteosarcoma;NOS" + "@id": "bts:SBIL-2" }, { - "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" + "@id": "bts:Scopoletin" }, { - "@id": "bts:EpendymomaWHOGrade3" + "@id": "bts:SDF-1ReceptorAntagonistPTX-9908" }, { - "@id": "bts:LungAdenocarcinoma;NOS" + "@id": "bts:Seclidemstat" }, { - "@id": "bts:LymphoproliferativeDisorder;NOS" + "@id": "bts:SedoxantroneTrihydrochloride" }, { - "@id": "bts:AtypicalLymphoidInfiltrate" + "@id": "bts:SelatinibDitosilate" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:SelectiveAndrogenReceptorModulatorRAD140" }, { - "@id": "bts:GenitalRhabdomyoma" + "@id": "bts:SelectiveCytokineInhibitoryDrugCC-1088" }, { - "@id": "bts:ChondroblasticOsteosarcoma" + "@id": "bts:SelectiveEstrogenReceptorDegraderAZD9496" }, { - "@id": "bts:Neuroepithelioma;NOS" + "@id": "bts:SelectiveEstrogenReceptorDegraderAZD9833" }, { - "@id": "bts:MalignantEpithelioidAndMyxoidNeoplasm" + "@id": "bts:SelectiveEstrogenReceptorDegraderLSZ102" }, { - "@id": "bts:Pancreatoblastoma" + "@id": "bts:SelectiveEstrogenReceptorDegraderLX-039" }, { - "@id": "bts:Nephroblastoma(WilmsTumor)" + "@id": "bts:SelectiveEstrogenReceptorDegraderLY3484356" }, { - "@id": "bts:MalignantGlioma" + "@id": "bts:SelectiveEstrogenReceptorDegraderSRN-927" }, { - "@id": "bts:EwingSarcoma" + "@id": "bts:SelectiveEstrogenReceptorModulatorCC-8490" }, { - "@id": "bts:AtypicalSmoothMuscleNeoplasm" + "@id": "bts:SelectiveEstrogenReceptorModulatorTAS-108" }, { - "@id": "bts:AcuteMyelomonocyticLeukemia;NOS" + "@id": "bts:SelectiveGlucocorticoidReceptorAntagonistCORT125281" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:SelectiveHumanEstrogen-receptorAlphaPartialAgonistTTC-352" }, { - "@id": "bts:EpithelialTumor;Benign" + "@id": "bts:Seliciclib" }, { - "@id": "bts:FavorTeratoma" + "@id": "bts:Selicrelumab" }, { - "@id": "bts:MalignantNeoplasmOfProstate" + "@id": "bts:Selinexor" }, { - "@id": "bts:Non-ClearCellRenalCellCarcinoma" + "@id": "bts:Selitrectinib" }, { - "@id": "bts:Meningioma;NOS;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" + "@id": "bts:Selonsertib" }, { - "@id": "bts:MelanoticSchwannoma;Other" + "@id": "bts:Selpercatinib" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;WNT-Activated" + "@id": "bts:Selumetinib" }, { - "@id": "bts:CarcinosarcomaNOS" + "@id": "bts:SelumetinibSulfate" }, { - "@id": "bts:Plasmacytoma;Extramedullary" + "@id": "bts:Semaxanib" }, { - "@id": "bts:InfantileFibrosarcoma" + "@id": "bts:Semuloparin" }, { - "@id": "bts:Glioma;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:Semustine" }, { - "@id": "bts:CNSPrimativeNeuroectodermalTumor(PNET)" + "@id": "bts:SenecaValleyVirus-001" }, { - "@id": "bts:Infiltratingductcarcinoma;NOS" + "@id": "bts:Seocalcitol" }, { - "@id": "bts:PrecursorB-CellLymphoblasticLeukemia" + "@id": "bts:SepantroniumBromide" }, { - "@id": "bts:SquamousCellCarcinomaInSitu;NOS" + "@id": "bts:Serabelisib" }, { - "@id": "bts:AcuteMyeloidLeukemia;T(16;16)(P13;Q11)" + "@id": "bts:SerclutamabTalirine" }, { - "@id": "bts:PapillaryTransitionalCellCarcinoma" + "@id": "bts:SERDD-0502" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:SERDG1T48" }, { - "@id": "bts:Low-GradeGlioneuronal;NeuronalTumor" + "@id": "bts:SERDGDC-9545" }, { - "@id": "bts:CombinedSmallCell-Adenocarcinoma" + "@id": "bts:SERDSAR439859" }, { - "@id": "bts:HepatocellularCarcinoma;NOS" + "@id": "bts:SERDSHR9549" }, { - "@id": "bts:SpindleCellCarcinoma;NOS" + "@id": "bts:SERDZN-c5" }, { - "@id": "bts:Carcinoma;DiffuseType" + "@id": "bts:Serdemetan" }, { - "@id": "bts:LentiginousMelanocyticNevus" + "@id": "bts:Sergiolide" }, { - "@id": "bts:Glioma;Malignant;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" + "@id": "bts:Seribantumab" }, { - "@id": "bts:SolitaryFibrousTumor;NOS" + "@id": "bts:Serine/ThreonineKinaseInhibitorCBP501" }, { - "@id": "bts:Glioma;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" + "@id": "bts:Serine/ThreonineKinaseInhibitorXL418" }, { - "@id": "bts:GranulosaCellTumor;Malignant" + "@id": "bts:Serplulimab" }, { - "@id": "bts:Ganglioneuroma;MaturingType;FavorableHistology" + "@id": "bts:Sevacizumab" }, { - "@id": "bts:InvasiveLobularCarcinoma" + "@id": "bts:Seviteronel" }, { - "@id": "bts:Ganglioglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:SharedAnti-Idiotype-AB-S006" }, { - "@id": "bts:BlandMyofibroblasticProliferationWithAssociatedFloridLymphoplasmacyticInflammation" + "@id": "bts:SharedAnti-Idiotype-AB-S024A" }, { - "@id": "bts:Medulloblastoma" + "@id": "bts:SharkCartilage" }, { - "@id": "bts:Hepatoblastoma" + "@id": "bts:SharkCartilageExtractAE-941" }, { - "@id": "bts:LowGradeGlial/GlioneuronalTumor" + "@id": "bts:ShenqiFuzhengInjectionSQ001" }, { - "@id": "bts:AtypicalTeratoidRhabdoidTumor;CNSWHOGrade4" + "@id": "bts:Sho-Saiko-To" }, { - "@id": "bts:Oligoastrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:ShortChainFattyAcidHQK-1004" }, { - "@id": "bts:DiffuseGlioma;FavorHighGrade" + "@id": "bts:SHP-1AgonistSC-43" }, { - "@id": "bts:ReactiveConnectiveTissue" + "@id": "bts:SHP2InhibitorJAB-3068" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Mutant" + "@id": "bts:SHP2InhibitorRLY-1971" }, { - "@id": "bts:TumorCells;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" + "@id": "bts:SHP2InhibitorRMC-4630" }, { - "@id": "bts:Glioma;Malignant;MalignantPeripheralNerveSheathTumor;NOS" + "@id": "bts:SHP2InhibitorTNO155" }, { - "@id": "bts:Melanoma;NOS" + "@id": "bts:ShuYuWanFormula" }, { - "@id": "bts:MalignantMelanocyticNeoplasm" + "@id": "bts:SialylTnAntigen" }, { - "@id": "bts:ChronicMyelogenousLeukemia;BCR/ABLPositive" + "@id": "bts:SialylTn-KLHVaccine" }, { - "@id": "bts:VascularLesion;ConsistentWithHemangioma" + "@id": "bts:Sibrotuzumab" }, { - "@id": "bts:SmallCellNeuroendocrineCarcinoma" + "@id": "bts:SiG12DLODER" }, { - "@id": "bts:MedullaryCarcinoma" + "@id": "bts:SilatecanAR-67" }, { - "@id": "bts:AnaplasticAstrocytoma;IDH-Wildtype;Glioblastoma;IDHWildtype" + "@id": "bts:Silibinin" }, { - "@id": "bts:Rhabdomyosarcoma;EmbryonalSubtype" + "@id": "bts:SiliconPhthalocyanine4" }, { - "@id": "bts:MedulloblastomaByMorphology;NON-WNTByImmunohistochemistry" + "@id": "bts:SilmitasertibSodium" }, { - "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;High-GradeGlioma" + "@id": "bts:Siltuximab" }, { - "@id": "bts:Ganglioglioma;NOS" + "@id": "bts:SimalikalactoneD" }, { - "@id": "bts:DysembryoplasticNeuroepithelialTumor;AngiocentricGlioma;Low-GradeGlioma" + "@id": "bts:Simeprevir" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:SimlukafuspAlfa" }, { - "@id": "bts:AngiomatoidFibrousHistiocytoma" + "@id": "bts:Simmitinib" }, { - "@id": "bts:MicropapillaryCarcinoma;NOS" + "@id": "bts:Simotaxel" }, { - "@id": "bts:InfiltratingLobularCarcinoma;NOS" + "@id": "bts:Simtuzumab" }, { - "@id": "bts:GastrointestinalStromalTumor" + "@id": "bts:Simurosertib" }, { - "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;Group4" + "@id": "bts:Sintilimab" }, { - "@id": "bts:Craniopharyngioma" + "@id": "bts:Siplizumab" }, { - "@id": "bts:Sertoli-LeydigCellTumor;IntermediateDifferentiation;WithHeterologousElements" + "@id": "bts:Sipuleucel-T" }, { - "@id": "bts:AcuteMyeloidLeukemia;Inv(16)(P13;Q22)" + "@id": "bts:Siremadlin" }, { - "@id": "bts:Subependymoma" + "@id": "bts:SiRNA-transfectedPeripheralBloodMononuclearCellsAPN401" }, { - "@id": "bts:GliomatosisCerebri" + "@id": "bts:Sirolimus" }, { - "@id": "bts:Infiltratinglobularcarcinoma;NOS" + "@id": "bts:SIRPa-4-1BBLFusionProteinDSP107" }, { - "@id": "bts:Schwannoma;NOS" + "@id": "bts:SIRPa-FcFusionProteinTTI-621" }, { - "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:SIRPa-Fc-CD40LFusionProteinSL-172154" }, { - "@id": "bts:Dysplasia" + "@id": "bts:SIRPa-IgG4-FcFusionProteinTTI-622" }, { - "@id": "bts:MalignantRhabdoidTumor" + "@id": "bts:SitimageneCeradenovec" }, { - "@id": "bts:BlueNevus;Malignant" + "@id": "bts:Sitravatinib" }, { - "@id": "bts:Adenocarcinoma;PancreatobiliaryType" + "@id": "bts:Sivifene" }, { - "@id": "bts:Ependymoma;NOS;ChoroidPlexusTumors;ChoroidPlexusPapilloma" + "@id": "bts:Sizofiran" }, { - "@id": "bts:Ganglioneuroblastoma;NodularType" + "@id": "bts:SLC6A8InhibitorRGX-202" }, { - "@id": "bts:GranulosaCellTumor;Juvenile" + "@id": "bts:SLCTInhibitorGNS561" }, { - "@id": "bts:JuvenileGranulosaCellTumor" + "@id": "bts:SMACMimeticBI891065" }, { - "@id": "bts:ChronicMyeloidLeukemia;BCR-ABL1-Positive" + "@id": "bts:SmacMimeticGDC-0152" }, { - "@id": "bts:Head&NeckSquamousCellCarcinoma" + "@id": "bts:SmacMimeticGDC-0917" }, { - "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" + "@id": "bts:SmacMimeticLCL161" }, { - "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" + "@id": "bts:SMOProteinInhibitorZSP1602" }, { - "@id": "bts:Ganglioglioma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:SmoothenedAntagonistBMS-833923" }, { - "@id": "bts:IntraductalPapillaryMucinousNeoplasmWithAnAssociatedInvasiveCarcinoma" + "@id": "bts:SmoothenedAntagonistLDE225Topical" }, { - "@id": "bts:AdrenalCorticalAdenoma;NOS" + "@id": "bts:SmoothenedAntagonistLEQ506" }, { - "@id": "bts:Adenocarcinoma;PancreatobiliaryType;Pancreatobiliary-TypeCarcinoma" + "@id": "bts:SmoothenedAntagonistTAK-441" }, { - "@id": "bts:Lipoblastomatosis" + "@id": "bts:SN-38-LoadedPolymericMicellesNK012" }, { - "@id": "bts:CentralNeurocytoma;GlioneuronalAndNeuronalTumors" + "@id": "bts:SNS01-TNanoparticles" }, { - "@id": "bts:Control" + "@id": "bts:Sobuzoxane" }, { - "@id": "bts:HHV8PositiveDiffuseLargeB-CellLymphoma" + "@id": "bts:SodiumBorocaptate" }, { - "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma;PleomorphicXanthoastrocytoma" + "@id": "bts:SodiumButyrate" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;Group4" + "@id": "bts:SodiumDichloroacetate" }, { - "@id": "bts:LargeCellMedulloblastoma" + "@id": "bts:SodiumIodideI-131" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(12;21)(P13;Q22);TEL-AML1(ETV6-RUNX1)" + "@id": "bts:SodiumMetaarsenite" }, { - "@id": "bts:CentralOsteosarcoma;NOS" + "@id": "bts:SodiumPhenylbutyrate" }, { - "@id": "bts:Chordoma" + "@id": "bts:SodiumSalicylate" }, { - "@id": "bts:PilocyticAstrocytoma;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" + "@id": "bts:SodiumSelenite" }, { - "@id": "bts:PilocyticAstrocytoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" + "@id": "bts:SodiumStibogluconate" }, { - "@id": "bts:DermatofibrosarcomaProtuberans;Fibrosarcomatous" + "@id": "bts:Sodium-PotassiumAdenosineTriphosphataseInhibitorRX108" }, { - "@id": "bts:NeuroendocrineCarcinoma;NOS" + "@id": "bts:SofituzumabVedotin" }, { - "@id": "bts:Glioma;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" + "@id": "bts:Solitomab" }, { - "@id": "bts:Oligodendroglioma;NOS" + "@id": "bts:Sonepcizumab" }, { - "@id": "bts:AcuteMonoblasticLeukemia" + "@id": "bts:Sonidegib" }, { - "@id": "bts:Glioma;Malignant;Low-GradeGlioma;PolymorphousLow-GradeNeuroepithelialTumorOfTheYoung" + "@id": "bts:Sonolisib" }, { - "@id": "bts:Neoplasm" + "@id": "bts:Sorafenib" }, { - "@id": "bts:Medulloepithelioma;NOS" + "@id": "bts:SorafenibTosylate" }, { - "@id": "bts:Oligodendroglioma;NOS;High-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" + "@id": "bts:SorghumbicolorSupplement" }, { - "@id": "bts:NotReported" + "@id": "bts:Sotigalimab" }, { - "@id": "bts:AggressiveFibromatosis" + "@id": "bts:Sotorasib" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges" + "@id": "bts:Sotrastaurin" }, { - "@id": "bts:LangerhansCellHistiocytosis;Disseminated" + "@id": "bts:SotrastaurinAcetate" }, { - "@id": "bts:Glioma;Malignant;Low-GradeGlioma;PilocyticAstrocytoma" + "@id": "bts:SoyIsoflavones" }, { - "@id": "bts:Oligoastrocytoma;NOS" + "@id": "bts:SoyProteinIsolate" }, { - "@id": "bts:UndifferentiatedNasopharyngealCarcinoma" + "@id": "bts:Spanlecortemlocel" }, { - "@id": "bts:SmallCellCarcinoma;NOS" + "@id": "bts:SparfosateSodium" }, { - "@id": "bts:Chordoma;NOS;Chordoma(IncludingPoorlyDifferentiatedChordoma);Other" + "@id": "bts:SparfosicAcid" }, { - "@id": "bts:Mesothelioma;Biphasic;Malignant;BLymphoblasticLeukemia/Lymphoma;NOS" + "@id": "bts:Spartalizumab" }, { - "@id": "bts:CentralNeurocytoma;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" + "@id": "bts:Spebrutinib" }, { - "@id": "bts:UndifferentiatedSmallRoundCellSarcoma" + "@id": "bts:SphericalNucleicAcidNanoparticleNU-0129" }, { - "@id": "bts:Rhabdomyoma;NOS" + "@id": "bts:Spirogermanium" }, { - "@id": "bts:Glioblastoma;IDHWildtype" + "@id": "bts:Spiromustine" }, { - "@id": "bts:Neoplasm;Malignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" + "@id": "bts:Spiroplatin" }, { - "@id": "bts:TherapyRelatedMyeloidNeoplasm" + "@id": "bts:SplicingInhibitorH3B-8800" }, { - "@id": "bts:AcuteMyeloidLeukemia;NOS" + "@id": "bts:Spongistatin" }, { - "@id": "bts:MalignantTumor;SpindleCellType;CNSSarcoma;CNSSarcoma;NOSOrNEC" + "@id": "bts:SqualamineLactate" }, { - "@id": "bts:LeydigCellTumor;Benign" + "@id": "bts:SR-BP1/HSIInhibitorSR31747A" }, { - "@id": "bts:MyelodysplasticSyndromeWithSingleLineageDysplasia" + "@id": "bts:SR-T100Gel" }, { - "@id": "bts:Germinoma;CNSGermCellTumors;CNSGerminoma" + "@id": "bts:SrcKinaseInhibitorAP23846" }, { - "@id": "bts:GlialTumor" + "@id": "bts:SrcKinaseInhibitorKX2-391" }, { - "@id": "bts:SynovialSarcoma;SpindleCell" + "@id": "bts:SrcKinaseInhibitorKX2-391Ointment" }, { - "@id": "bts:SpindleCellMelanoma;TypeB" + "@id": "bts:SrcKinaseInhibitorM475271" }, { - "@id": "bts:FamilialAdenomatousPolyposis" + "@id": "bts:Src/AblKinaseInhibitorAZD0424" }, { - "@id": "bts:GiantCellGlioblastoma" + "@id": "bts:Src/tubulinInhibitorKX02" }, { - "@id": "bts:Teratocarcinoma" + "@id": "bts:SRPK1/ABCG2InhibitorSCO-101" }, { - "@id": "bts:Adenoma;NOS" + "@id": "bts:SsRNA-basedImmunomodulatorCV8102" }, { - "@id": "bts:AcralLentiginousMelanoma;Malignant" + "@id": "bts:SSTR2-targetingProtein/DM1ConjugatePEN-221" }, { - "@id": "bts:CarcinomaNOS" + "@id": "bts:St.John'sWort" }, { - "@id": "bts:PapillaryCarcinoma;NOS" + "@id": "bts:Stallimycin" }, { - "@id": "bts:PoorlyDifferentiatedNeuroblastoma" + "@id": "bts:StaphylococcalEnterotoxinA" }, { - "@id": "bts:SolidPseudopapillaryNeoplasmOfPancreas" + "@id": "bts:StaphylococcalEnterotoxinB" }, { - "@id": "bts:NasopharyngealCarcinoma" + "@id": "bts:STATInhibitorOPB-111077" }, { - "@id": "bts:AdenocarcinomaInAdenomatousPolyposisColi" + "@id": "bts:STAT3InhibitorDSP-0337" }, { - "@id": "bts:Leiomyoma;NOS" + "@id": "bts:STAT3InhibitorOPB-31121" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma;NOS" + "@id": "bts:STAT3InhibitorOPB-51602" }, { - "@id": "bts:ChoroidPlexusPapilloma;NOS;OtherCNSEmbryonalTumors;Pineoblastoma" + "@id": "bts:STAT3InhibitorTTI-101" }, { - "@id": "bts:TumorCells;Benign" + "@id": "bts:STAT3InhibitorWP1066" }, { - "@id": "bts:MarginalZoneB-CellLymphoma;NOS" + "@id": "bts:Staurosporine" }, { - "@id": "bts:TumorCells;Malignant;Other;PinealParenchymalTumorOfIntermediateDifferentiation" + "@id": "bts:STINGAgonistBMS-986301" }, { - "@id": "bts:Pinealoma" + "@id": "bts:STINGAgonistGSK3745417" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor;INI1/SMARCB1-Altered;WHOGrade4" + "@id": "bts:STINGAgonistIMSA101" }, { - "@id": "bts:MetastaticSignetRingCellCarcinoma" + "@id": "bts:STINGAgonistMK-1454" }, { - "@id": "bts:Astrocytoma" + "@id": "bts:STINGAgonistSB11285" }, { - "@id": "bts:DesmoplasticInfantileAstrocytoma" + "@id": "bts:STINGAgonistTAK-676" }, { - "@id": "bts:MalignantSarcomaWithDICER1Mutation;FavorPrimaryIntracranialSarcoma;DICER1Mutant" + "@id": "bts:STING-activatingCyclicDinucleotideAgonistMIW815" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHypodiploidy" + "@id": "bts:STING-expressingE.coliSYNB1891" }, { - "@id": "bts:ColonAdenocarcinoma" + "@id": "bts:Streptonigrin" }, { - "@id": "bts:Ependymoma;NOS;SupratentorialEpendymoma;NOSOrNEC" + "@id": "bts:Streptozocin" }, { - "@id": "bts:ProliferativeDermalLesionInCongenitalNevus" + "@id": "bts:StrontiumChlorideSr-89" }, { - "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;WNT-Activated" + "@id": "bts:SubmicronParticlePaclitaxelSterileSuspension" }, { - "@id": "bts:ArteriovenousMalformation" + "@id": "bts:Sugemalimab" }, { - "@id": "bts:Glioma;Malignant" + "@id": "bts:Sulfatinib" }, { - "@id": "bts:AcinarCellCarcinoma" + "@id": "bts:Sulforaphane" }, { - "@id": "bts:SpinalEpendymoma;HistologicallyLowGrade(CNSWHOGrade2)" + "@id": "bts:Sulindac" }, { - "@id": "bts:Leukemia;NOS" + "@id": "bts:Sulofenur" }, { - "@id": "bts:Hemangioblastoma;Other" + "@id": "bts:SumoylationInhibitorTAK-981" }, { - "@id": "bts:High-GradeSerousCarcinoma" + "@id": "bts:Sunitinib" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group3" + "@id": "bts:SunitinibMalate" }, { - "@id": "bts:SchwannianStromaPoorPeripheralNeuroblasticTumor;ConsistentWithNeuroblastoma" + "@id": "bts:SuperEnhancerInhibitorGZ17-6.02" }, { - "@id": "bts:AcuteMyeloidLeukemiaWithMutatedCEBPA" + "@id": "bts:SuperagonistInterleukin-15:Interleukin-15ReceptoralphaSu/FcFusionComplexALT-803" }, { - "@id": "bts:ParostealOsteosarcoma" + "@id": "bts:SuperoxideDismutaseMimeticGC4711" }, { - "@id": "bts:EpithelioidMesothelioma;Malignant" + "@id": "bts:Suramin" }, { - "@id": "bts:Meningioma;NOS" + "@id": "bts:SuraminSodium" }, { - "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:SurvivinAntigen" }, { - "@id": "bts:ChoriocarcinomaCombinedWithOtherGermCellElements" + "@id": "bts:SurvivinAntigenVaccineDPX-Survivac" }, { - "@id": "bts:BrainTumor;LowGradeGlioma" + "@id": "bts:SurvivinmRNAAntagonistEZN-3042" }, { - "@id": "bts:Ganglioglioma;NOS;DiffuseAstrocytoma;MYB-OrMYBL1-Altered;Low-GradeGlioma" + "@id": "bts:Survivin-expressingCVD908ssb-TXSVNVaccine" }, { - "@id": "bts:EmbryonalTumorWithMultilayeredRosettesC19MC-Altered" + "@id": "bts:Sustained-releaseLipidInhaledCisplatin" }, { - "@id": "bts:Neoplasm;Malignant;UncertainWhetherPrimaryOrMetastatic" + "@id": "bts:Sustained-releaseMitomycinCHydrogelFormulationUGN-101" }, { - "@id": "bts:DesmoplasticSmallRoundCellTumor" + "@id": "bts:Sustained-releaseMitomycinCHydrogelFormulationUGN-102" }, { - "@id": "bts:EmbryonalRhabdomyosarcoma" + "@id": "bts:SykInhibitorHMPL-523" }, { - "@id": "bts:LangerhansCellHistiocytosis" + "@id": "bts:SynchrotopeTA2MPlasmidDNAVaccine" }, { - "@id": "bts:GlialNeoplasmShowingHigh-GradeFeatures" + "@id": "bts:SynchrovaxSEMPlasmidDNAVaccine" }, { - "@id": "bts:Oligodendroglioma" + "@id": "bts:SyntheticAlkaloidPM00104" }, { - "@id": "bts:MalignantMelanoma;NOS" + "@id": "bts:SyntheticGlioblastomaMutatedTumor-specificPeptidesVaccineTherapyAPVAC2" }, { - "@id": "bts:MyxopapillaryEpendymoma;Ependymoma" + "@id": "bts:SyntheticGlioblastomaTumor-associatedPeptidesVaccineTherapyAPVAC1" }, { - "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;NOSOrNEC" + "@id": "bts:SynthetichTERTDNAVaccineINO-1400" }, { - "@id": "bts:Neoplasm;Malignant;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" + "@id": "bts:SynthetichTERTDNAVaccineINO-1401" }, { - "@id": "bts:Adenocarcinoma" + "@id": "bts:SyntheticHypericin" }, { - "@id": "bts:BLymphoblasticLeukemia/LymphomaWithT(9;22)(Q34;Q11.2);BCR-ABL1" + "@id": "bts:SyntheticLongE6Peptide-Toll-likeReceptorLigandConjugateVaccineISA201" }, { - "@id": "bts:Hemangioendothelioma;Malignant" + "@id": "bts:SyntheticLongE6/E7PeptidesVaccineHPV-01" }, { - "@id": "bts:ChoroidPlexusNeoplasm" + "@id": "bts:SyntheticLongHPV16E6/E7PeptidesVaccineISA101b" }, { - "@id": "bts:Craniopharyngioma;Adamantinomatous;AdamantinomatousCraniopharyngioma" + "@id": "bts:SyntheticPlumbaginPCUR-101" }, { - "@id": "bts:Pinealoblastoma" + "@id": "bts:T900607" }, { - "@id": "bts:LargeCellMedulloblastoma;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" + "@id": "bts:Tabalumab" }, { - "@id": "bts:SpindleCellSarcoma" + "@id": "bts:Tabelecleucel" }, { - "@id": "bts:Gliosarcoma" + "@id": "bts:Tacedinaline" }, { - "@id": "bts:CentralPrimitiveNeuroectodermalTumor" + "@id": "bts:Tafasitamab" }, { - "@id": "bts:Astrocytoma;IDH-Mutant;CNSWHOGrade3" + "@id": "bts:Tagraxofusp-erzs" }, { - "@id": "bts:Astrocytoma;Benign" + "@id": "bts:Talabostat" }, { - "@id": "bts:PleomorphicRhabdomyosarcoma;AdultType" + "@id": "bts:TalabostatMesylate" }, { - "@id": "bts:MyeloidSarcoma" + "@id": "bts:Talacotuzumab" }, { - "@id": "bts:Glioma;Malignant;Other;OtherLow-GradeB-CellLymphomasOfTheCNS" + "@id": "bts:TalactoferrinAlfa" }, { - "@id": "bts:Ganglioneuroma" + "@id": "bts:Taladegib" }, { - "@id": "bts:Neoplasm;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" + "@id": "bts:Talampanel" }, { - "@id": "bts:ClearCellRenalCellCarcinoma" + "@id": "bts:TalaporfinSodium" }, { - "@id": "bts:Ependymoma;NOS;AtypicalMeningioma" + "@id": "bts:Talazoparib" }, { - "@id": "bts:Oligodendroglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" + "@id": "bts:Taletrectinib" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor" + "@id": "bts:TalimogeneLaherparepvec" }, { - "@id": "bts:Glioma;Malignant;DiffuseMidlineGlioma;H3K27-Altered;High-GradeGlioma" + "@id": "bts:Tallimustine" }, { - "@id": "bts:Sertoli-LeydigCellTumorOfIntermediateDifferentiation;NOS" + "@id": "bts:Talmapimod" }, { - "@id": "bts:DesmoplasticNodularMedulloblastoma" + "@id": "bts:Talotrexin" }, { - "@id": "bts:PapillaryMicrocarcinoma" + "@id": "bts:TalotrexinAmmonium" }, { - "@id": "bts:Craniopharyngioma;NOS" + "@id": "bts:Taltobulin" }, { - "@id": "bts:LowGradeGlialNeoplasm" + "@id": "bts:TAM/c-MetInhibitorRXDX-106" }, { - "@id": "bts:Leiomyosarcoma;NOS" + "@id": "bts:Tamibarotene" }, { - "@id": "bts:FollicularAdenocarcinoma;NOS" - } - ], - "sms:displayName": "Model Primary Diagnosis", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ModelPrimarySite", - "@type": "rdfs:Class", - "rdfs:comment": "Primary site in the body associated with the primary diagnosis.", - "rdfs:label": "ModelPrimarySite", - "rdfs:subClassOf": [ + "@id": "bts:Taminadenant" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Tamoxifen" + }, { - "@id": "bts:Abdomen" + "@id": "bts:TamoxifenCitrate" }, { - "@id": "bts:AbdominalWall" + "@id": "bts:TamrintamabPamozirine" }, { - "@id": "bts:Acetabulum" + "@id": "bts:Tandutinib" }, { - "@id": "bts:AdjacentOrgan" + "@id": "bts:Tanespimycin" }, { - "@id": "bts:AdrenalGland" + "@id": "bts:Tanibirumab" }, { - "@id": "bts:Anal/Perianal" + "@id": "bts:TankyraseInhibitorSTP1002" }, { - "@id": "bts:AnkleJoint" + "@id": "bts:Tanomastat" }, { - "@id": "bts:AnteriorSkullBase" + "@id": "bts:Tapotoclax" }, { - "@id": "bts:Anus" + "@id": "bts:Tarenflurbil" }, { - "@id": "bts:Appendix" + "@id": "bts:Tarextumab" }, { - "@id": "bts:AsciticFluid" + "@id": "bts:Tariquidar" }, { - "@id": "bts:Axilla" + "@id": "bts:Tasadenoturev" }, { - "@id": "bts:AxillaryNodes" + "@id": "bts:Taselisib" }, { - "@id": "bts:Bladder" + "@id": "bts:Tasidotin" }, { - "@id": "bts:Bladder/Prostate" + "@id": "bts:Tasisulam" }, { - "@id": "bts:Bone" + "@id": "bts:TasisulamSodium" }, { - "@id": "bts:BoneFace" + "@id": "bts:Tasquinimod" }, { - "@id": "bts:BoneMarrow" + "@id": "bts:Taurolidine" }, { - "@id": "bts:BoneorBoneMarrow" + "@id": "bts:Tauromustine" }, { - "@id": "bts:Brain" + "@id": "bts:Taurultam" }, { - "@id": "bts:Brain/Leptomeninges" + "@id": "bts:TaurultamAnalogueGP-2250" }, { - "@id": "bts:Breast" + "@id": "bts:TavokinogeneTelseplasmid" }, { - "@id": "bts:Bronchus" + "@id": "bts:Tavolimab" }, { - "@id": "bts:Buttock" + "@id": "bts:TaxaneAnalogueTPI287" }, { - "@id": "bts:Calcaneum" + "@id": "bts:TaxaneCompound" }, { - "@id": "bts:CarpalBone" + "@id": "bts:TaxolAnalogueSID530" }, { - "@id": "bts:CaudaEquinaSpinalCord" + "@id": "bts:Tazarotene" }, { - "@id": "bts:CeliacNodes" + "@id": "bts:Tazemetostat" }, { - "@id": "bts:CentralNervousSystem" + "@id": "bts:Tebentafusp" }, { - "@id": "bts:Cerebellum" + "@id": "bts:Teclistamab" }, { - "@id": "bts:CerebrospinalFluid" + "@id": "bts:TecogalanSodium" }, { - "@id": "bts:CervicalNodes" + "@id": "bts:Tefinostat" }, { - "@id": "bts:CervicalSpine" + "@id": "bts:Tegafur" }, { - "@id": "bts:CervicalVertebra" + "@id": "bts:Tegafur-gimeracil-oteracilPotassium" }, { - "@id": "bts:Cervix" + "@id": "bts:Tegafur-Gimeracil-OteracilPotassium-LeucovorinCalciumOralFormulation" }, { - "@id": "bts:Cheek" + "@id": "bts:Tegafur-Uracil" }, { - "@id": "bts:Chest" + "@id": "bts:Tegavivint" }, { - "@id": "bts:ChestWall" + "@id": "bts:Teglarinad" }, { - "@id": "bts:Choroid" + "@id": "bts:TeglarinadChloride" }, { - "@id": "bts:Clavicle" + "@id": "bts:Telaglenastat" }, { - "@id": "bts:Coccyx" + "@id": "bts:TelaglenastatHydrochloride" }, { - "@id": "bts:Colon" + "@id": "bts:Telapristone" }, { - "@id": "bts:Craniospinal" + "@id": "bts:TelapristoneAcetate" }, { - "@id": "bts:Cutaneous" + "@id": "bts:TelatinibMesylate" }, { - "@id": "bts:DeepFacialAreas" + "@id": "bts:Telisotuzumab" }, { - "@id": "bts:DeepGray(e.g.BasalgangliaorThalamus)" + "@id": "bts:TelisotuzumabVedotin" }, { - "@id": "bts:Dermis" + "@id": "bts:TelomeraseInhibitorFJ5002" }, { - "@id": "bts:DistantLymphNodes" + "@id": "bts:Telomerase-specificType5AdenovirusOBP-301" }, { - "@id": "bts:DorsalSpine" + "@id": "bts:Teloxantrone" }, { - "@id": "bts:Duodenum" + "@id": "bts:TeloxantroneHydrochloride" }, { - "@id": "bts:Ear-LateralSkullBaseandNasopharynx" + "@id": "bts:Telratolimod" }, { - "@id": "bts:ElbowJoint" + "@id": "bts:Temarotene" }, { - "@id": "bts:Epididymis" + "@id": "bts:Temoporfin" }, { - "@id": "bts:Epitrochlear" + "@id": "bts:Temozolomide" }, { - "@id": "bts:EpitrochlearorBrachialNodes" + "@id": "bts:Temsirolimus" }, { - "@id": "bts:Esophagus" + "@id": "bts:Tenalisib" }, { - "@id": "bts:EthmoidBone" + "@id": "bts:Tenifatecan" }, { - "@id": "bts:Eyelid" + "@id": "bts:Teniposide" }, { - "@id": "bts:Face" + "@id": "bts:Tepoditamab" }, { - "@id": "bts:FallopianTube" + "@id": "bts:Tepotinib" }, { - "@id": "bts:FemaleReproductiveSystemPart" + "@id": "bts:Teprotumumab" }, { - "@id": "bts:Femur" + "@id": "bts:Terameprocol" }, { - "@id": "bts:Fibula" + "@id": "bts:Terfluranol" }, { - "@id": "bts:FibulaHead" + "@id": "bts:Tergenpumatucel-L" }, { - "@id": "bts:Finger" + "@id": "bts:Teroxirone" }, { - "@id": "bts:Foot" + "@id": "bts:Tertomotide" }, { - "@id": "bts:FootBone" + "@id": "bts:Tesetaxel" }, { - "@id": "bts:FootJoint" + "@id": "bts:Tesevatinib" }, { - "@id": "bts:FootPhalanges" + "@id": "bts:Tesidolumab" }, { - "@id": "bts:Forearm" + "@id": "bts:Testolactone" }, { - "@id": "bts:FourthVentricle" + "@id": "bts:TestosteroneEnanthate" }, { - "@id": "bts:FrontalBone" + "@id": "bts:TetanusToxoidVaccine" }, { - "@id": "bts:FrontalCortex" + "@id": "bts:TetradecanoylphorbolAcetate" }, { - "@id": "bts:FrontalLobe" + "@id": "bts:Tetrahydrouridine" }, { - "@id": "bts:Gallbladder" + "@id": "bts:TetraphenylChlorinDisulfonate" }, { - "@id": "bts:GastrointestinalTract" + "@id": "bts:Tetrathiomolybdate" }, { - "@id": "bts:Hand" + "@id": "bts:Tezacitabine" }, { - "@id": "bts:HandBone" + "@id": "bts:TezacitabineAnhydrous" }, { - "@id": "bts:HandJoint" + "@id": "bts:TGF-betaReceptor1InhibitorPF-06952229" }, { - "@id": "bts:HandPhalanges" + "@id": "bts:TGF-betaReceptor1KinaseInhibitorSH3051" }, { - "@id": "bts:Head" + "@id": "bts:TGF-betaReceptor1KinaseInhibitorYL-13027" }, { - "@id": "bts:HeadandNeck" + "@id": "bts:TGFa-PE38Immunotoxin" }, { - "@id": "bts:Heart" + "@id": "bts:TGFbetaInhibitorLY3200882" }, { - "@id": "bts:Hip" + "@id": "bts:TGFbetaReceptorEctodomain-IgGFcFusionProteinAVID200" }, { - "@id": "bts:Hip/InguinalRegion" + "@id": "bts:Thalicarpine" }, { - "@id": "bts:Humerus" + "@id": "bts:Thalidomide" }, { - "@id": "bts:Hypodermis" + "@id": "bts:Theliatinib" }, { - "@id": "bts:Hypopharynx" + "@id": "bts:Theramide" }, { - "@id": "bts:IliacCrest" + "@id": "bts:TherapeuticAngiotensin-(1-7)" }, { - "@id": "bts:Ilium" + "@id": "bts:TherapeuticBreast/Ovarian/ProstatePeptideCancerVaccineDPX-0907" }, { - "@id": "bts:InferiorLimb" + "@id": "bts:TherapeuticCancerVaccineATP128" }, { - "@id": "bts:InfraclavicularNodes" + "@id": "bts:TherapeuticEstradiol" }, { - "@id": "bts:Inguinal" + "@id": "bts:TherapeuticHydrocortisone" }, { - "@id": "bts:InguinalorFemoralNodes" + "@id": "bts:TherapeuticLiverCancerPeptideVaccineIMA970A" }, { - "@id": "bts:Intra-abdominal" + "@id": "bts:Thiarabine" }, { - "@id": "bts:Intraperitoneal" + "@id": "bts:Thiodiglycol" }, { - "@id": "bts:Intraspinal" + "@id": "bts:Thioguanine" }, { - "@id": "bts:Intrathoracic" + "@id": "bts:ThioguanineAnhydrous" }, { - "@id": "bts:Ischium" + "@id": "bts:Thioinosine" }, { - "@id": "bts:Kidney" + "@id": "bts:Thioredoxin-1InhibitorPX-12" }, { - "@id": "bts:KneeJoint" + "@id": "bts:Thiotepa" }, { - "@id": "bts:LacrimalBone" + "@id": "bts:Thioureidobutyronitrile" }, { - "@id": "bts:LargeVessels" + "@id": "bts:THL-P" }, { - "@id": "bts:Larynx" + "@id": "bts:ThoriumTh227Anetumab" }, { - "@id": "bts:Larynx-Trachea" + "@id": "bts:ThoriumTh227AnetumabCorixetan" }, { - "@id": "bts:LateralVentricle" + "@id": "bts:ThoriumTh227Anti-HER2MonoclonalAntibodyBAY2701439" }, { - "@id": "bts:Leg" + "@id": "bts:ThoriumTh227Anti-PSMAMonoclonalAntibodyBAY2315497" }, { - "@id": "bts:Leptomeningeal" + "@id": "bts:ThreonineTyrosineKinaseInhibitorCFI-402257" }, { - "@id": "bts:Liver" + "@id": "bts:ThymidylateSynthaseInhibitorCX1106" }, { - "@id": "bts:Liver/BiliaryTract" + "@id": "bts:ThymidylateSynthaseInhibitorDFP-11207" }, { - "@id": "bts:LowerArm" + "@id": "bts:Thymopentin" }, { - "@id": "bts:LowerExtremity" + "@id": "bts:ThyroidExtract" }, { - "@id": "bts:LowerLeg" + "@id": "bts:Tiazofurin" }, { - "@id": "bts:LumbarSpinalCord" + "@id": "bts:Tidutamab" }, { - "@id": "bts:LumbarSpine" + "@id": "bts:Tigapotide" }, { - "@id": "bts:LumbarVertebra" + "@id": "bts:Tigatuzumab" }, { - "@id": "bts:Lung" + "@id": "bts:TIGITInhibitorM6223" }, { - "@id": "bts:LymphNode" + "@id": "bts:TIGIT-targetingAgentMK-7684" }, { - "@id": "bts:LymphaticBasin" + "@id": "bts:Tilarginine" }, { - "@id": "bts:Mandible" + "@id": "bts:Tilogotamab" }, { - "@id": "bts:Maxilla" + "@id": "bts:TilsotolimodSodium" }, { - "@id": "bts:Mediastinum" + "@id": "bts:Timonacic" }, { - "@id": "bts:Medulla" + "@id": "bts:TinEthylEtiopurpurin" }, { - "@id": "bts:Meninges" + "@id": "bts:Tinostamustine" }, { - "@id": "bts:MesentericNodes" + "@id": "bts:TinzaparinSodium" }, { - "@id": "bts:Metacarpals" + "@id": "bts:TiomolibdateCholine" }, { - "@id": "bts:Metatarsals" + "@id": "bts:TiomolibdateDiammonium" }, { - "@id": "bts:Midbrain" + "@id": "bts:TipapkinogeneSovacivec" }, { - "@id": "bts:MiddleEar" + "@id": "bts:Tipifarnib" }, { - "@id": "bts:NasalBone" + "@id": "bts:Tipiracil" }, { - "@id": "bts:NasalCavity" + "@id": "bts:TipiracilHydrochloride" }, { - "@id": "bts:NasalCavityandParanasalSinuses" + "@id": "bts:Tirabrutinib" }, { - "@id": "bts:NasalSeptum" + "@id": "bts:Tiragolumab" }, { - "@id": "bts:Nasopharynx" + "@id": "bts:Tirapazamine" }, { - "@id": "bts:Neck" + "@id": "bts:Tirbanibulin" }, { - "@id": "bts:NotReported" + "@id": "bts:Tisagenlecleucel" }, { - "@id": "bts:OccipitalBone" + "@id": "bts:Tislelizumab" }, { - "@id": "bts:OccipitalCortex" + "@id": "bts:TisotumabVedotin" }, { - "@id": "bts:OccipitalLobe" + "@id": "bts:Tivantinib" }, { - "@id": "bts:OculusDexter(RightEye)" + "@id": "bts:Tivozanib" }, { - "@id": "bts:OculusSinister(LeftEye)" + "@id": "bts:TLCELL-12" }, { - "@id": "bts:OculusUterque(BothEyes)" + "@id": "bts:TLRAgonistBDB001" }, { - "@id": "bts:Omentum" + "@id": "bts:TLRAgonistBSG-001" }, { - "@id": "bts:OpticChiasm" + "@id": "bts:TLRAgonistCADI-05" }, { - "@id": "bts:OpticNerve" + "@id": "bts:TLR-DirectedCationicLipid-DNAComplexJVRS-100" }, { - "@id": "bts:OralCavity" + "@id": "bts:TLR7Agonist852A" }, { - "@id": "bts:Orbit" + "@id": "bts:TLR7agonistBNT411" }, { - "@id": "bts:Oropharynx" + "@id": "bts:TLR7AgonistLHC165" }, { - "@id": "bts:Other" + "@id": "bts:TLR7/8/9AntagonistIMO-8400" }, { - "@id": "bts:Ovary" + "@id": "bts:TLR8AgonistDN1508052" }, { - "@id": "bts:Pancreas" + "@id": "bts:TLR9AgonistAST-008" }, { - "@id": "bts:Para-AorticLymphNodes" + "@id": "bts:TM4SF1-CAR/EpCAM-CAR-expressingAutologousTCells" }, { - "@id": "bts:ParanasalSinus" + "@id": "bts:Tocilizumab" }, { - "@id": "bts:ParapharyngealArea" + "@id": "bts:Tocladesine" }, { - "@id": "bts:Paraspinal" + "@id": "bts:Tocotrienol" }, { - "@id": "bts:Paratesticular" + "@id": "bts:Tocotrienol-richFraction" }, { - "@id": "bts:Parathyroid" + "@id": "bts:Tolebrutinib" }, { - "@id": "bts:ParietalBone" + "@id": "bts:Toll-likeReceptor7AgonistDSP-0509" }, { - "@id": "bts:ParietalCortex" + "@id": "bts:Tolnidamine" }, { - "@id": "bts:ParietalLobe" + "@id": "bts:Tomaralimab" }, { - "@id": "bts:Parotid" + "@id": "bts:Tomato-SoyJuice" }, { - "@id": "bts:Patella" + "@id": "bts:Tomivosertib" }, { - "@id": "bts:PectoralNodes" + "@id": "bts:TopicalBetulinicAcid" }, { - "@id": "bts:Pelvis" + "@id": "bts:TopicalCelecoxib" }, { - "@id": "bts:Pelvis/Sacrum" + "@id": "bts:TopicalFluorouracil" }, { - "@id": "bts:Penis" + "@id": "bts:TopicalGemcitabineHydrochloride" }, { - "@id": "bts:Perineum" + "@id": "bts:TopicalPotassiumDobesilate" }, { - "@id": "bts:Peritoneum" + "@id": "bts:TopicalTrichloroaceticAcid" }, { - "@id": "bts:Pineal" + "@id": "bts:Topixantrone" }, { - "@id": "bts:Pleura" + "@id": "bts:TopoisomeraseIInhibitorGenz-644282" }, { - "@id": "bts:PleuraThymus" + "@id": "bts:TopoisomeraseIInhibitorLMP400" }, { - "@id": "bts:PleuralEffusion" + "@id": "bts:TopoisomeraseIInhibitorLMP776" }, { - "@id": "bts:PonsVarolii" + "@id": "bts:TopoisomeraseI/IIInhibitorNEV-801" }, { - "@id": "bts:PoplitealNodes" + "@id": "bts:Topoisomerase-1InhibitorLMP744" }, { - "@id": "bts:Pre-auricularNodes" + "@id": "bts:Topoisomerase-IIInhibitorRacemicXK469" }, { - "@id": "bts:Prostate" + "@id": "bts:Topoisomerase-II-betaInhibitorRacemicXK469" }, { - "@id": "bts:RadiusBone" + "@id": "bts:Topotecan" }, { - "@id": "bts:Rectum" + "@id": "bts:TopotecanHydrochloride" }, { - "@id": "bts:RegionalLymphNodes" + "@id": "bts:TopotecanHydrochlorideLiposomes" }, { - "@id": "bts:Retroperitoneum" + "@id": "bts:TopotecanSustained-releaseEpiscleralPlaque" }, { - "@id": "bts:Rib" + "@id": "bts:Topsalysin" }, { - "@id": "bts:Sacrococcygeal" + "@id": "bts:TORC1/2KinaseInhibitorDS-3078a" }, { - "@id": "bts:Sacrum" + "@id": "bts:Toremifene" }, { - "@id": "bts:SalivaryGland" + "@id": "bts:ToremifeneCitrate" }, { - "@id": "bts:Scalp" + "@id": "bts:Toripalimab" }, { - "@id": "bts:Scapula" + "@id": "bts:Tosedostat" }, { - "@id": "bts:Scapula/Clavicle" + "@id": "bts:Tositumomab" }, { - "@id": "bts:Schlemm'sCanal" + "@id": "bts:TotalAndrogenBlockade" }, { - "@id": "bts:Shoulder" + "@id": "bts:Tovetumab" }, { - "@id": "bts:ShoulderGirdle" + "@id": "bts:TozasertibLactate" }, { - "@id": "bts:ShoulderJoint" + "@id": "bts:TP40Immunotoxin" }, { - "@id": "bts:Skin" + "@id": "bts:Trabectedin" }, { - "@id": "bts:Skull" + "@id": "bts:Trabedersen" }, { - "@id": "bts:SkullandFaceBone" + "@id": "bts:TRAILReceptorAgonistABBV-621" }, { - "@id": "bts:SmallIntestine" + "@id": "bts:Trametinib" }, { - "@id": "bts:SoftTissue" + "@id": "bts:TrametinibDimethylSulfoxide" }, { - "@id": "bts:SoftTissue;NOS" + "@id": "bts:TransSodiumCrocetinate" }, { - "@id": "bts:SphenoidBone" + "@id": "bts:Transdermal17beta-EstradiolGelBHR-200" }, { - "@id": "bts:SpinalCord" + "@id": "bts:Transdermal4-Hydroxytestosterone" }, { - "@id": "bts:Spine" + "@id": "bts:TransferrinReceptor-TargetedAnti-RRM2siRNACALAA-01" }, { - "@id": "bts:Spleen" + "@id": "bts:TransferrinReceptor-TargetedLiposomalp53cDNA" }, { - "@id": "bts:SplenicHilarNodes" + "@id": "bts:Transferrin-CRM107" }, { - "@id": "bts:Sternum" + "@id": "bts:TranylcypromineSulfate" }, { - "@id": "bts:Sternum/ChestWall" + "@id": "bts:Trapoxin" }, { - "@id": "bts:Stomach" + "@id": "bts:Trastuzumab" }, { - "@id": "bts:SuperiorLimbandShoulder" + "@id": "bts:TrastuzumabConjugateBI-CON-02" }, { - "@id": "bts:SuperiorMaxilla" + "@id": "bts:TrastuzumabDeruxtecan" }, { - "@id": "bts:SupraclavicularNodes" + "@id": "bts:TrastuzumabDuocarmazine" }, { - "@id": "bts:SuprasellarPituitary" + "@id": "bts:TrastuzumabEmtansine" }, { - "@id": "bts:Talus" + "@id": "bts:TrastuzumabMonomethylAuristatinF" }, { - "@id": "bts:TarsalBone" + "@id": "bts:Trastuzumab-TLR7/8AgonistBDC-1001" }, { - "@id": "bts:TemporalBone" + "@id": "bts:Trastuzumab/Hyaluronidase-oysk" }, { - "@id": "bts:TemporalCortex" + "@id": "bts:Trastuzumab/TesirineAntibody-drugConjugateADCT-502" }, { - "@id": "bts:TemporalLobe" + "@id": "bts:Trebananib" }, { - "@id": "bts:Testis" + "@id": "bts:Tremelimumab" }, { - "@id": "bts:Thalamus" + "@id": "bts:Treosulfan" }, { - "@id": "bts:Thigh" + "@id": "bts:Tretazicar" }, { - "@id": "bts:ThirdVentricle" + "@id": "bts:Tretinoin" }, { - "@id": "bts:ThoracicSpinalCord" + "@id": "bts:TretinoinLiposome" }, { - "@id": "bts:ThoracicVertebra" + "@id": "bts:TriamcinoloneAcetonide" }, { - "@id": "bts:Thorax" + "@id": "bts:TriamcinoloneHexacetonide" }, { - "@id": "bts:Thymus" + "@id": "bts:Triapine" }, { - "@id": "bts:Thyroid" + "@id": "bts:TriazeneDerivativeCB10-277" }, { - "@id": "bts:ThyroidandParathyroid" + "@id": "bts:TriazeneDerivativeTriN2755" }, { - "@id": "bts:Tibia" + "@id": "bts:Triazinate" }, { - "@id": "bts:Toe" + "@id": "bts:Triaziquone" }, { - "@id": "bts:Tonsil" + "@id": "bts:Tributyrin" }, { - "@id": "bts:TrabecularMeshwork" + "@id": "bts:TriciribinePhosphate" }, { - "@id": "bts:Trachea" + "@id": "bts:TrientineHydrochloride" }, { - "@id": "bts:Trunk" + "@id": "bts:Triethylenemelamine" }, { - "@id": "bts:Trunk-Paraspinal" + "@id": "bts:Trifluridine" }, { - "@id": "bts:Ulna" + "@id": "bts:TrifluridineandTipiracilHydrochloride" }, { - "@id": "bts:Unknown" + "@id": "bts:Trigriluzole" }, { - "@id": "bts:UpperAirway" + "@id": "bts:Trilaciclib" }, { - "@id": "bts:UpperArm" + "@id": "bts:Trimelamol" }, { - "@id": "bts:UpperExtremity" + "@id": "bts:TrimericGITRL-FcOMP-336B11" }, { - "@id": "bts:Ureter" + "@id": "bts:TrimethylcolchicinicAcid" }, { - "@id": "bts:Urogenital" + "@id": "bts:Trimetrexate" }, { - "@id": "bts:Uterus" + "@id": "bts:TrimetrexateGlucuronate" }, { - "@id": "bts:Vagina" + "@id": "bts:Trioxifene" }, { - "@id": "bts:Vasculo-Nervous" + "@id": "bts:TriplatinTetranitrate" }, { - "@id": "bts:Viscera" + "@id": "bts:TriptolideAnalog" }, { - "@id": "bts:Vulva" + "@id": "bts:Triptorelin" }, { - "@id": "bts:Waldeyer'sRing" + "@id": "bts:TriptorelinPamoate" }, { - "@id": "bts:WristJoint" + "@id": "bts:Tris-acrylGelatinMicrospheres" }, { - "@id": "bts:ZygomaticBone" - } - ], - "sms:displayName": "Model Primary Site", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ModelSiteofOrigin", - "@type": "rdfs:Class", - "rdfs:comment": "The text term used to describe the anatomic site of origin associated with the malignant disease model.", - "rdfs:label": "ModelSiteofOrigin", - "rdfs:subClassOf": [ + "@id": "bts:Tritylcysteine" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:TRKInhibitorAZD6918" + }, { - "@id": "bts:AbdominalAorta" + "@id": "bts:TRKInhibitorTQB3558" }, { - "@id": "bts:AbdominalEsophagus" + "@id": "bts:TrkAInhibitorVMD-928" }, { - "@id": "bts:AbdominalMuscle" + "@id": "bts:Trodusquemine" }, { - "@id": "bts:AbdominalSkin" + "@id": "bts:Trofosfamide" }, { - "@id": "bts:AbdominalWall" + "@id": "bts:Troglitazone" }, { - "@id": "bts:AbducensNerve" + "@id": "bts:TropomyosinReceptorKinaseInhibitorAZD7451" }, { - "@id": "bts:AccessoryNerve" + "@id": "bts:Troriluzole" }, { - "@id": "bts:Acetabulum" + "@id": "bts:Troxacitabine" }, { - "@id": "bts:AcromioclavicularJoint" + "@id": "bts:TroxacitabineNucleotideProdrugMIV-818" }, { - "@id": "bts:AdiposeTissue" + "@id": "bts:TRPM8AgonistD-3263" }, { - "@id": "bts:AdrenalCortex" + "@id": "bts:TRPV6CalciumChannelInhibitorSOR-C13" }, { - "@id": "bts:AdrenalGland" + "@id": "bts:TSP-1MimeticABT-510" }, { - "@id": "bts:AdrenalMedulla" + "@id": "bts:TSP-1MimeticFusionProteinCVX-045" }, { - "@id": "bts:AmpullaofVater" + "@id": "bts:Tubercidin" }, { - "@id": "bts:AnalCanal" + "@id": "bts:TubulinBindingAgentTTI-237" }, { - "@id": "bts:AnalTransitionalZone" + "@id": "bts:TubulinInhibitorALB109564Dihydrochloride" }, { - "@id": "bts:AnkleJoint" + "@id": "bts:TubulinInhibitorALB-109564" }, { - "@id": "bts:AnkleSkin" + "@id": "bts:TubulinPolymerizationInhibitorAEZS112" }, { - "@id": "bts:AntecubitalRegion" + "@id": "bts:TubulinPolymerizationInhibitorCKD-516" }, { - "@id": "bts:AnteriorCranialFossa" + "@id": "bts:TubulinPolymerizationInhibitorVERU-111" }, { - "@id": "bts:AnteriorMediastinum" + "@id": "bts:Tubulin-BindingAgentSSR97225" }, { - "@id": "bts:AnteriorSurfaceoftheEpiglottis" + "@id": "bts:Tucatinib" }, { - "@id": "bts:AnteriorWalloftheBladder" + "@id": "bts:Tucidinostat" }, { - "@id": "bts:AnteriorWalloftheNasopharynx" + "@id": "bts:TucotuzumabCelmoleukin" }, { - "@id": "bts:AntrumPylori" + "@id": "bts:Tyroserleutide" }, { - "@id": "bts:Anus" + "@id": "bts:TyrosinasePeptide" }, { - "@id": "bts:Aorta" + "@id": "bts:Tyrosinase-KLH" }, { - "@id": "bts:AortocavalLymphNode" + "@id": "bts:Tyrosinase:146-156Peptide" }, { - "@id": "bts:ApexoftheTongue" + "@id": "bts:TyrosineKinaseInhibitor" }, { - "@id": "bts:Aponeurosis" + "@id": "bts:TyrosineKinaseInhibitorOSI-930" }, { - "@id": "bts:AppendageoftheUterus" + "@id": "bts:TyrosineKinaseInhibitorSU5402" }, { - "@id": "bts:Appendix" + "@id": "bts:TyrosineKinaseInhibitorTL-895" }, { - "@id": "bts:Areola" + "@id": "bts:TyrosineKinaseInhibitorXL228" }, { - "@id": "bts:ArmSkin" + "@id": "bts:UAEInhibitorTAK-243" }, { - "@id": "bts:Artery" + "@id": "bts:Ubenimex" }, { - "@id": "bts:ArticularCartilage" + "@id": "bts:UbidecarenoneNanodispersionBPM31510n" }, { - "@id": "bts:AryepiglotticFold" + "@id": "bts:Ublituximab" }, { - "@id": "bts:ArytenoidCartilage" + "@id": "bts:Ulinastatin" }, { - "@id": "bts:AscendingColon" + "@id": "bts:Ulixertinib" }, { - "@id": "bts:AutonomicNervousSystem" + "@id": "bts:Ulocuplumab" }, { - "@id": "bts:Axilla" + "@id": "bts:Umbralisib" }, { - "@id": "bts:AxillaryArtery" + "@id": "bts:UncariatomentosaExtract" }, { - "@id": "bts:AxillaryLymphNode" + "@id": "bts:Upamostat" }, { - "@id": "bts:AxillaryTailoftheBreast" + "@id": "bts:Upifitamab" }, { - "@id": "bts:Back" + "@id": "bts:Uproleselan" }, { - "@id": "bts:BartholinGland" + "@id": "bts:Uprosertib" }, { - "@id": "bts:BasalGanglia" + "@id": "bts:Urabrelimab" }, { - "@id": "bts:BaseoftheTongue" + "@id": "bts:UracilOintment" }, { - "@id": "bts:Biceps" + "@id": "bts:Urelumab" }, { - "@id": "bts:BicepsFemoris" + "@id": "bts:Uroacitides" }, { - "@id": "bts:BileCanaliculus" + "@id": "bts:Urokinase-DerivedPeptideA6" }, { - "@id": "bts:BileDuct" + "@id": "bts:UrsolicAcid" }, { - "@id": "bts:BiliaryTract" + "@id": "bts:USP14/UCHL5InhibitorVLX1570" }, { - "@id": "bts:Bladder" + "@id": "bts:Utomilumab" }, { - 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"bts:CerebellopontineAngle" + "@id": "bts:VerpasepCaltespen" }, { - "@id": "bts:Cerebellum" + "@id": "bts:Verubulin" }, { - "@id": "bts:CerebralCortex" + "@id": "bts:VerubulinHydrochloride" }, { - "@id": "bts:CerebralHemisphere" + "@id": "bts:Vesencumab" }, { - "@id": "bts:CerebralMeninges" + "@id": "bts:Vesigenurtucel-L" }, { - "@id": "bts:CerebralPeduncle" + "@id": "bts:VGEFMixed-BackboneAntisenseOligonucleotideGEM220" }, { - "@id": "bts:CerebralWhiteMatter" + "@id": "bts:VGEFR/c-kit/PDGFRTyrosineKinaseInhibitorXL820" }, { - "@id": "bts:CeruminousGland" + "@id": "bts:Viagenpumatucel-L" }, { - "@id": "bts:CervicalEsophagus" + "@id": "bts:Vibecotamab" }, { - "@id": "bts:CervicalGland" + "@id": "bts:Vibostolimab" }, { - "@id": "bts:CervicalLymphNode" + "@id": "bts:Vilaprisan" }, { - "@id": "bts:CervixUteri" + "@id": "bts:Vinblastine" }, { - "@id": "bts:Cheek" + "@id": "bts:VinblastineSulfate" }, { - "@id": "bts:Chest" + "@id": "bts:Vincristine" }, { - "@id": "bts:ChestWall" + "@id": 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"bts:CuneiformCartilage" + "@id": "bts:Vorolanib" }, { - "@id": "bts:CysticDuct" + "@id": "bts:VorsetzumabMafodotin" }, { - "@id": "bts:DescendingColon" + "@id": "bts:Vosaroxin" }, { - "@id": "bts:Diaphragm" + "@id": "bts:Vosilasarm" }, { - "@id": "bts:DiaphragmaticLymphNode" + "@id": "bts:Voxtalisib" }, { - "@id": "bts:DomeoftheBladder" + "@id": "bts:Vulinacimab" }, { - "@id": "bts:DuctofGartner" + "@id": "bts:WarfarinSodium" }, { - "@id": "bts:DuctusSantorini" + "@id": "bts:Wee1InhibitorZN-c3" }, { - "@id": "bts:Duodenum" + "@id": "bts:Wee1KinaseInhibitorDebio0123" }, { - "@id": "bts:DuraMater" + "@id": "bts:WhiteCarrot" }, { - "@id": "bts:Ear" + "@id": "bts:WntSignalingInhibitorSM04755" }, { - "@id": "bts:EarSkin" + "@id": "bts:WntSignalingPathwayInhibitorSM08502" }, { - "@id": "bts:Ectocervix" + "@id": "bts:Wnt-5aMimicHexapeptideFoxy-5" }, { - "@id": "bts:ElbowJoint" + "@id": "bts:Wobe-MugosE" }, { - "@id": "bts:ElbowSkin" + "@id": "bts:WT1PeptideVaccineOCV-501" }, { - "@id": 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+ }, + "sms:displayName": "Individual Days to Treatment", + "sms:required": "sms:false", + "sms:validationRules": [ + "int" + ] + }, + { + "@id": "bts:IndividualTreatmentResponse", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the patient's final outcome after the treatment was administered.", + "rdfs:label": "IndividualTreatmentResponse", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:CompleteResponse" }, { - "@id": "bts:HeadofthePancreas" + "@id": "bts:NoEvidenceofDisease" }, { - "@id": "bts:HeadSkin" + "@id": "bts:NoResponse" }, { - "@id": "bts:Heart" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Helix" + "@id": "bts:NotEvaluable" }, { - "@id": "bts:HematopoieticSystem" + "@id": "bts:NotReported" }, { - "@id": "bts:Hepatic" + "@id": "bts:PartialResponse" }, { - "@id": "bts:HepaticDuct" + "@id": "bts:PersistentDisease" }, { - "@id": "bts:HepaticFlexure" + "@id": "bts:ProgressiveDisease" }, { - "@id": "bts:HepaticLymphNode" + "@id": "bts:StableDisease" }, { - "@id": "bts:Hip" + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Individual Treatment Response", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualDaystoLastFollowup", + "@type": "rdfs:Class", + "rdfs:comment": "Number of days between the dates used for index and last follow-up", + "rdfs:label": "IndividualDaystoLastFollowup", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual Days to Last Followup", + "sms:required": "sms:false", + "sms:validationRules": [ + "int" + ] + }, + { + "@id": "bts:IndividualRecurrenceStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment.", + "rdfs:label": "IndividualRecurrenceStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Yes" }, { - "@id": "bts:HipJoint" + "@id": "bts:Unknown" }, { - "@id": "bts:Hippocampus" + "@id": "bts:NotReported" }, { - "@id": "bts:Humerus" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Hymen" + "@id": "bts:NotAllowedtoCollect" }, { - "@id": "bts:HyoidBone" + "@id": "bts:No" }, { - "@id": "bts:HypoglossalNerve" + "@id": "bts:Censored" + } + ], + "sms:displayName": "Individual Recurrence Status", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualDaysToRecurrence", + "@type": "rdfs:Class", + "rdfs:comment": "Number of days between the date used for index and the date the patient's disease recurred", + "rdfs:label": "IndividualDaysToRecurrence", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual Days To Recurrence", + "sms:required": "sms:false", + "sms:validationRules": [ + "int" + ] + }, + { + "@id": "bts:IndividualDaystoLastKnownDiseaseStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days.", + "rdfs:label": "IndividualDaystoLastKnownDiseaseStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Individual Days to Last Known Disease Status", + "sms:required": "sms:false", + "sms:validationRules": [ + "int" + ] + }, + { + "@id": "bts:IndividualLastKnownDiseaseStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the last known status of an individual.", + "rdfs:label": "IndividualLastKnownDiseaseStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Biochemicalevidenceofdiseasewithoutstructuralcorrelate" }, { - "@id": "bts:Hypopharynx" + "@id": "bts:TumorFree" }, { - "@id": "bts:Hypothalamus" + "@id": "bts:Unknown" }, { - "@id": "bts:IleocecalValve" + "@id": "bts:WithTumor" }, { - "@id": "bts:Ileum" + "@id": "bts:NotReported" }, { - "@id": "bts:IliacArtery" + "@id": "bts:NotApplicable" }, { - "@id": "bts:IliacLymphNode" + "@id": "bts:NotAllowedToCollect" }, { - "@id": "bts:IliacVein" + "@id": "bts:DistantMetastasis" }, { - "@id": "bts:IliopsoasMuscle" + "@id": "bts:LocalizedDisease" }, { - "@id": "bts:Ilium" + "@id": "bts:RegionalDisease" }, { - "@id": "bts:InferiorVenaCava" + "@id": "bts:NewTumorEvent" + } + ], + "sms:displayName": "Individual Last Known Disease Status", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:IndividualVitalStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the patient's current vital status.", + "rdfs:label": "IndividualVitalStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Unspecified" }, { - "@id": "bts:InfraclavicularLymphNode" + "@id": "bts:Unknown" }, { - "@id": "bts:InfraclavicularRegion" + "@id": "bts:Dead" }, { - "@id": "bts:InfratentorialBrain" + "@id": "bts:Alive" }, { - "@id": "bts:InguinalLymphNode" - }, + "@id": "bts:Notreported" + } + ], + "sms:displayName": "Individual Vital Status", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T0", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T0", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T0", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1a", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1a", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1a", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1a1", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1a1", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1a1", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1a2", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1a2", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1a2", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1b", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1b", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1b", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1b1", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1b1", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1b1", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1b2", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1b2", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1b2", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1c", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1c", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1c", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T1mi", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T1mi", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T1mi", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T2", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T2", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T2", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T2a", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T2a", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T2a", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T2a1", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T2a1", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T2a1", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T2a2", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T2a2", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T2a2", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T2b", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T2b", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T2b", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T2c", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T2c", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T2c", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T2d", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T2d", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T2d", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T3", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T3", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T3", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T3a", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T3a", + "rdfs:subClassOf": [ { - "@id": "bts:InguinalRegion" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T3a", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T3b", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T3b", + "rdfs:subClassOf": [ { - "@id": "bts:InnerCanthus" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T3b", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T3c", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T3c", + "rdfs:subClassOf": [ { - "@id": "bts:InnerEar" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T3c", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T3d", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T3d", + "rdfs:subClassOf": [ { - "@id": "bts:IntercostalLymphNode" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T3d", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T4", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T4", + "rdfs:subClassOf": [ { - "@id": "bts:IntercostalMuscle" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T4", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T4a", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T4a", + "rdfs:subClassOf": [ { - "@id": "bts:IntercostalNerve" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T4a", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T4b", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T4b", + "rdfs:subClassOf": [ { - "@id": "bts:InternalCapsule" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T4b", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T4c", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T4c", + "rdfs:subClassOf": [ { - "@id": "bts:InternalIliacLymphNode" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T4c", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T4d", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T4d", + "rdfs:subClassOf": [ { - "@id": "bts:InternalMammaryArtery" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T4d", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T4e", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T4e", + "rdfs:subClassOf": [ { - "@id": "bts:InternalMammaryLymphNode" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T4e", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:T5", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "T5", + "rdfs:subClassOf": [ { - "@id": "bts:InternalNare" - }, + "@id": "bts:IndividualPrimaryTumorStage" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "T5", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Tis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Tis", + "rdfs:subClassOf": [ { - "@id": 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{ + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Dead", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Alive", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Alive", + "rdfs:subClassOf": [ { - "@id": "bts:Liver" - }, + "@id": "bts:IndividualVitalStatus" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alive", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Institution", + "@type": "rdfs:Class", + "rdfs:comment": "Institutions participating in consortia activities", + "rdfs:label": "Institution", + "rdfs:subClassOf": [ { - "@id": "bts:LobuleoftheAuricle" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Institution", + "sms:required": "sms:false", + "sms:requiresDependency": [ { - "@id": "bts:LowerExtremity" + "@id": "bts:Component" }, { - "@id": 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(e.g. ArizonaStatUniversity, BostonUniversity, etc.)", + "rdfs:label": "InstitutionName", + "rdfs:subClassOf": [ { - "@id": "bts:LumbosacralPlexus" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Institution Name", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:InstitutionFullName", + "@type": "rdfs:Class", + "rdfs:comment": "Human readable, full name of the institution. (e.g. Arizona State University, Boston University, etc.)", + "rdfs:label": "InstitutionFullName", + "rdfs:subClassOf": [ { - "@id": "bts:Lung" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Institution Full Name", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:InstitutionAlias", + "@type": "rdfs:Class", + "rdfs:comment": "Alias of the institution (e.g. ASU, BU, etc.)", + "rdfs:label": "InstitutionAlias", + "rdfs:subClassOf": [ { - "@id": "bts:LymphNode" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Institution Alias", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:InstitutionLocationState", + "@type": "rdfs:Class", + "rdfs:comment": "The US state the institution is located in. Use Not Applicable, if not applicable.", + "rdfs:label": "InstitutionLocationState", + "rdfs:subClassOf": [ { - "@id": "bts:LymphNodeofInguinalRegionorLeg" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Lymphatic" + "@id": "bts:Alabama" }, { - "@id": "bts:MainBronchus" + "@id": "bts:Alaska" }, { - "@id": "bts:MaleGenitalia" + "@id": "bts:AmericanSamoa" }, { - "@id": "bts:MalePrepuce" + "@id": "bts:Arizona" }, { - "@id": "bts:MammaryGland" + "@id": "bts:Arkansas" }, { - "@id": "bts:Mandible" + "@id": "bts:California" }, { - "@id": "bts:MasseterMuscle" + "@id": "bts:Colorado" }, { - "@id": "bts:Maxilla" + "@id": "bts:Connecticut" }, { - "@id": "bts:MaxillarySinus" + "@id": "bts:Delaware" }, { - "@id": "bts:MeckelDiverticulum" + "@id": "bts:DistrictofColumbia" }, { - "@id": "bts:MedianNerve" + "@id": "bts:Florida" }, { - "@id": "bts:MediastinalLymphNode" + "@id": "bts:Georgia" }, { - "@id": 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"bts:MiddleEar" + "@id": "bts:Montana" }, { - "@id": "bts:MiddleLobeoftheRightLung" + "@id": "bts:Nebraska" }, { - "@id": "bts:MiddleThirdoftheEsophagus" + "@id": "bts:Nevada" }, { - "@id": "bts:MinorSalivaryGland" + "@id": "bts:NewHampshire" }, { - "@id": "bts:MonsPubis" + "@id": "bts:NewJersey" }, { - "@id": "bts:MucosaoftheLip" + "@id": "bts:NewMexico" }, { - "@id": "bts:MucosaoftheLowerLip" + "@id": "bts:NewYork" }, { - "@id": "bts:MucosaoftheUpperLip" + "@id": "bts:NorthCarolina" }, { - "@id": "bts:Muscle" + "@id": "bts:NorthDakota" }, { - "@id": "bts:MusculusLatissimusDorsi" + "@id": "bts:NorthernMarianaIslands" }, { - "@id": "bts:Myocardium" + "@id": "bts:NotApplicable" }, { - "@id": "bts:Myometrium" + "@id": "bts:Ohio" }, { - "@id": "bts:NasalBone" + "@id": "bts:Oklahoma" }, { - "@id": "bts:NasalCartilage" + "@id": "bts:Oregon" }, { - "@id": "bts:NasalCavity" + "@id": "bts:Pennsylvania" }, { - "@id": "bts:NasalSeptum" + "@id": "bts:PuertoRico" }, { - "@id": "bts:NasalTurbinate" + "@id": "bts:RhodeIsland" }, { - "@id": "bts:NasolacrimalDuct" + "@id": "bts:SouthCarolina" }, { - "@id": "bts:Nasopharynx" + "@id": "bts:SouthDakota" }, { - "@id": "bts:NeckSkin" + "@id": "bts:Tennessee" }, { - "@id": "bts:Nerve" + "@id": "bts:Texas" }, { - "@id": "bts:NervousSystem" + "@id": "bts:U.S.VirginIslands" }, { - "@id": "bts:Nipple" + "@id": "bts:Utah" }, { - "@id": "bts:Nose" + "@id": "bts:Vermont" }, { - "@id": "bts:Nostril" + "@id": "bts:Virginia" }, { - "@id": "bts:ObturatorLymphNode" + "@id": "bts:Washington" }, { - "@id": "bts:ObturatorNerve" + "@id": "bts:WestVirginia" }, { - "@id": "bts:OccipitalBone" + "@id": "bts:Wisconsin" }, { - "@id": "bts:OccipitalLobe" - }, + "@id": "bts:Wyoming" + } + ], + "sms:displayName": "Institution Location State", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:InstitutionLocationCity", + "@type": "rdfs:Class", + "rdfs:comment": "The City the institution is located in.", + "rdfs:label": "InstitutionLocationCity", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Institution Location City", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:Rorid", + "@type": "rdfs:Class", + "rdfs:comment": "Unique identifier (ROR ID) of an the institution", + "rdfs:label": "Rorid", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Rorid", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:Alabama", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Alabama", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alabama", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Alaska", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Alaska", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alaska", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AmericanSamoa", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AmericanSamoa", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "American Samoa", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Arizona", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Arizona", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Arizona", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Arkansas", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Arkansas", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Arkansas", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:California", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "California", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "California", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Colorado", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Colorado", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Colorado", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Connecticut", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Connecticut", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Connecticut", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Delaware", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Delaware", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Delaware", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DistrictofColumbia", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "DistrictofColumbia", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "District of Columbia", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Florida", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Florida", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Florida", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Georgia", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Georgia", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Georgia", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Guam", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Guam", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Guam", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Hawaii", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Hawaii", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Hawaii", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Idaho", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Idaho", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Idaho", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Illinois", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Illinois", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Illinois", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Indiana", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Indiana", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Indiana", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Iowa", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Iowa", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Iowa", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Kansas", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Kansas", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Kansas", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Kentucky", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Kentucky", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Kentucky", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Louisiana", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Louisiana", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Louisiana", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Maine", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Maine", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Maine", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Maryland", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Maryland", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Maryland", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Massachusetts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Massachusetts", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Massachusetts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Michigan", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Michigan", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Michigan", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Minnesota", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Minnesota", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Minnesota", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MinorOutlyingIslands", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MinorOutlyingIslands", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": 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"@id": "http://schema.biothings.io" + }, + "sms:displayName": "Montana", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Nebraska", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Nebraska", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Nebraska", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Nevada", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Nevada", + "rdfs:subClassOf": [ + { + "@id": "bts:InstitutionLocationState" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Nevada", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NewHampshire", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NewHampshire", + "rdfs:subClassOf": [ + { + "@id": 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"@id": "bts:13-Deoxydoxorubicin" + "@id": "bts:Thymoma;NOS" }, { - "@id": "bts:14CBMS-275183" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Ependymoma;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:17beta-HydroxysteroidDehydrogenaseType5InhibitorASP9521" + "@id": "bts:Desmoplastic/NodularMedulloblastoma" }, { - "@id": "bts:2-Deoxy-D-glucose" + "@id": "bts:PapillaryGlioneuronalTumor" }, { - "@id": "bts:2-Ethylhydrazide" + "@id": "bts:MixedPhenotypeAcuteLeukemia;T/Myeloid;NOS" }, { - "@id": "bts:2-Fluoroadenine" + "@id": "bts:Cholangiocarcinoma" }, { - "@id": "bts:2-Fluorofucose-containingSGN-2FF" + "@id": "bts:Astroblastoma;MN1-Altered.HistologicallyHigh-Grade" }, { - "@id": "bts:2-Hydroxyestradiol" + "@id": "bts:Sertoli-LeydigCellTumor;PoorlyDifferentiated;WithHeterologousElements" }, { - "@id": "bts:2-Hydroxyestrone" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;Infant-TypeHemisphericGlioma" }, { - "@id": "bts:2-HydroxyflutamideDepot" + "@id": "bts:JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:2-HydroxyoleicAcid" + "@id": "bts:EmbryonalNeoplasmWithINI-1LossByImmunohistochemistry" }, { - "@id": "bts:2-Methoxyestradiol" + "@id": "bts:MyeloidLeukemiaWithMyelodysplasia-RelatedChanges" }, { - "@id": "bts:2-MethoxyestradiolNanocrystalColloidalDispersion" + "@id": "bts:PrimaryCutaneousFollicleCenterLymphoma" }, { - "@id": "bts:2-Methoxyestrone" + "@id": "bts:ChoroidPlexusCarcinoma;WHOGrade3" }, { - "@id": "bts:2-O;3-ODesulfatedHeparin" + "@id": "bts:InfiltratingDuctCarcinomaNOS" }, { - "@id": "bts:2;6-Diaminopurine" + "@id": "bts:TLymphoblasticLeukemia/Lymphoma" }, { - "@id": "bts:2;6-Dimethoxyquinone" + "@id": "bts:Glioma;Malignant;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:2'-F-ara-deoxyuridine" + "@id": "bts:MixedGermCellTumor;MyelodysplasticSyndromeWithExcessBlasts" }, { - "@id": "bts:3'-C-ethynylcytidine" + "@id": "bts:ClearCellAdenocarcinoma;NOS" }, { - "@id": "bts:3'-dAPhosphoramidateNUC-7738" + "@id": "bts:CutaneousT-CellLymphoma;NOS" }, { - "@id": "bts:4-Nitroestrone3-MethylEther" + "@id": "bts:Germinoma" }, { - "@id": "bts:4-Thio-2-deoxycytidine" + "@id": "bts:Neoplasm;Malignant;ATRT;NOSOrNEC;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:4'-Iodo-4'-Deoxydoxorubicin" + "@id": "bts:MeningealMelanocytoma" }, { - "@id": "bts:5-Aza-4'-thio-2'-deoxycytidine" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:5-Fluoro-2-Deoxycytidine" + "@id": "bts:AcutePromyelocyticLeukemia;T(15;17)(Q22;Q11-12)" }, { - "@id": "bts:6-Phosphofructo-2-kinase/fructose-2;6-bisphosphatasesIsoform3InhibitorACT-PFK-158" + "@id": "bts:AlveolarSoftPartSarcoma" }, { - "@id": "bts:7-Cyanoquinocarcinol" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:7-Ethyl-10-Hydroxycamptothecin" + "@id": "bts:MixedEpithelioidAndSpindleCellMelanoma" }, { - "@id": "bts:7-Hydroxystaurosporine" + "@id": "bts:CNSEmbryonalTumor;NOS;CNSEmbryonalTumor;NOSOrNEC;OtherCNSEmbryonalTumors" }, { - "@id": "bts:8-Azaguanine" + "@id": "bts:MalignantTumor;SpindleCellType" }, { - "@id": "bts:9-Ethyl6-Mercaptopurine" + "@id": "bts:Glioma;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:9H-Purine-6Thio-98D" + "@id": "bts:Glioma;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:A2AReceptorAntagonistEOS100850" + "@id": "bts:EndometrioidCarcinoma;NOS" }, { - "@id": "bts:Abagovomab" + "@id": "bts:LungSquamousCellCarcinoma;NOS" }, { - "@id": "bts:Abarelix" + "@id": "bts:PapillaryUrothelialCarcinoma;Non-Invasive" }, { - "@id": "bts:Abemaciclib" + "@id": "bts:Neuroblastoma;UndifferentiatedType" }, { - "@id": "bts:AbemaciclibMesylate" + "@id": "bts:PeriostealOsteosarcoma" }, { - "@id": "bts:Abexinostat" + "@id": "bts:MixedPhenotypeAcuteLeukemia;B/Myeloid;NOS" }, { - "@id": "bts:AbexinostatTosylate" + "@id": "bts:InflammatoryCarcinoma" }, { - "@id": "bts:Abiraterone" + "@id": "bts:Glioblastoma;NOS" }, { - "@id": "bts:AbirateroneAcetate" + "@id": "bts:Carcinoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Abituzumab" + "@id": "bts:SquamousCellCarcinoma;NOS" }, { - "@id": "bts:AcaiBerryJuice" + "@id": "bts:HypocellularLowGradeLesion" }, { - "@id": "bts:Acalabrutinib" + "@id": "bts:GlioblastomaMultiforme" }, { - "@id": "bts:Acalisib" + "@id": "bts:Pancreas-UndifferentiatedCarcinoma" }, { - "@id": "bts:Aceglatone" + "@id": "bts:DifferentiatingNeuroblastoma" }, { - "@id": "bts:Acetylcysteine" + "@id": "bts:MyxoidSpindleCellTumor" }, { - "@id": "bts:Acitretin" + "@id": "bts:MerkelCellTumor" }, { - "@id": "bts:Acivicin" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS;CNSSarcoma;CNSSarcoma;NOSOrNEC" }, { - "@id": "bts:AclacinomycinB" + "@id": "bts:Hemangioma;NOS" }, { - "@id": "bts:Aclarubicin" + "@id": "bts:AcuteMyeloidLeukemiaWithAbnormalMarrowEosinophils" }, { - "@id": "bts:Acodazole" + "@id": "bts:WellDifferentiatedNeuroendocrinceTumor;Grade1" }, { - "@id": "bts:AcodazoleHydrochloride" + "@id": "bts:Ganglioglioma;Anaplastic" }, { - "@id": "bts:AcolbifeneHydrochloride" + "@id": "bts:EpendymomaWHOGrade2" }, { - "@id": "bts:Acridine" + "@id": "bts:SynovialSarcoma;NOS" }, { - "@id": "bts:AcridineCarboxamide" + "@id": "bts:ThymicCarcinoma;NOS" }, { - "@id": "bts:Acronine" + "@id": "bts:TumorCells;Malignant" }, { - "@id": "bts:ActiniumAc225Lintuzumab" + "@id": "bts:PilomyxoidAstrocytoma" }, { - "@id": "bts:ActiniumAc225-FPI-1434" + "@id": "bts:PapillaryCarcinoma;ColumnarCell" }, { - "@id": "bts:ActiniumAc-225Anti-PSMAMonoclonalAntibodyJ591" + "@id": "bts:PlexiformFibrohistiocyticTumor" }, { - "@id": "bts:ActinomycinC2" + "@id": "bts:Astrocytoma;NOS;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:ActinomycinC3" + "@id": "bts:Carcinoma;Undifferentiated;NOS" }, { - "@id": "bts:ActinomycinF1" + "@id": "bts:DermatofibrosarcomaProtuberans;NOS" }, { - "@id": "bts:ActivinType2BReceptorFcFusionProteinSTM434" + "@id": "bts:HighGradeGliomaWithNecrosis;WHOGrade4" }, { - "@id": "bts:AcyclicNucleosidePhosphonateProdrugABI-1968" + "@id": "bts:Infiltratingductularcarcinoma" }, { - "@id": "bts:Ad-RTS-hIL-12" + "@id": "bts:AcuteMyeloidLeukemiaWithMyelodysplasia-RelatedChanges;JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:AdagloxadSimolenin" + "@id": "bts:InfiltratingDuctAndMucinousCarcinoma" }, { - "@id": "bts:Adavosertib" + "@id": "bts:IntraductalPapillaryCarcinoma" }, { - "@id": "bts:Adecatumumab" + "@id": "bts:SerousSurfacePapillaryCarcinoma" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistAZD4635" + "@id": "bts:InvasiveCarcinoma" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistCS3005" + "@id": "bts:HighGradeMalignantEpithelioidNeoplasm" }, { - "@id": "bts:AdenosineA2AReceptorAntagonistNIR178" + "@id": "bts:FavorPilocyticAstrocytomaWithIncreasedProliferationIndices" }, { - "@id": "bts:AdenosineA2AReceptorAntagonist/Phosphodiesterase10APBF-999" + "@id": "bts:Medulloblastoma;ClassicMorphology;CNSWHOGrade4;NON-WNT/NON-SHH;Group4SubtypeByMethylation" }, { - "@id": "bts:AdenosineA2A/A2BReceptorAntagonistAB928" + "@id": "bts:CompositeHodgkinAndNon-HodgkinLymphoma" }, { - "@id": "bts:AdenosineA2BReceptorAntagonistPBF-1129" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT;NOSOrNEC" }, { - "@id": "bts:Adenovector-transducedAP1903-inducibleMyD88/CD40-expressingAutologousPSMA-specificProstateCancerVaccineBPX-201" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-TYR" }, { - "@id": "bts:AdenoviralBrachyuryVaccineETBX-051" + "@id": "bts:PrimaryCutaneousCD30PositiveT-CellLymphoproliferativeDisorder" }, { - "@id": "bts:AdenoviralCancerVaccinePF-06936308" + "@id": "bts:Hemangioendothelioma;NOS" }, { - "@id": "bts:AdenoviralMUC1VaccineETBX-061" + "@id": "bts:HypercellularLesionWithAtypia" }, { - "@id": "bts:AdenoviralPSAVaccineETBX-071" + "@id": "bts:EmbryonalCarcinoma;NOS" }, { - "@id": "bts:AdenoviralTransducedhIL-12-expressingAutologousDendriticCellsINXN-3001PlusActivatorLigandINXN-1001" + "@id": "bts:Subependymoma;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:AdenoviralTumor-specificNeoantigenPrimingVaccineGAd-209-FSP" + "@id": "bts:GermCellTumor;Nonseminomatous" }, { - "@id": "bts:AdenoviralTumor-specificNeoantigenPrimingVaccineGRT-C901" + "@id": "bts:AdrenalCorticalCarcinoma" }, { - "@id": "bts:Adenovirus5/F35-HumanGuanylylCyclaseC-PADRE" + "@id": "bts:OlfactoryNeurocytoma" }, { - "@id": "bts:AdenovirusSerotype26-expressingHPV16VaccineJNJ-63682918" + "@id": "bts:LargeCellMedulloblastoma;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:AdenovirusSerotype26-expressingHPV18VaccineJNJ-63682931" + "@id": "bts:NuclearProteinInTestis(NUT)-AssociatedCarcinoma" }, { - "@id": "bts:Adenovirus-expressingTLR5/TLR5AgonistNanoformulationM-VM3" + "@id": "bts:Epithelial-MyoepithelialCarcinoma" }, { - "@id": "bts:Adenovirus-mediatedHumanInterleukin-12INXN-2001PlusActivatorLigandINXN-1001" + "@id": "bts:SquamousCellCarcinoma;Keratinizing;NOS" }, { - "@id": "bts:Aderbasib" + "@id": "bts:Ganglioneuroma;Other;Schwannoma" }, { - "@id": "bts:ADH-1" + "@id": "bts:GlomusTumor;Malignant" }, { - "@id": "bts:AE37Peptide/GM-CSFVaccine" + "@id": "bts:Neoplasm;Malignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:AEE788" + "@id": "bts:MalignantLymphoma;Non-Hodgkin;NOS" }, { - "@id": "bts:AerosolGemcitabine" + "@id": "bts:EmbryonalRhabdomyosarcoma;NOS;CNSEmbryonalTumor;NOS" }, { - "@id": "bts:AerosolizedAldesleukin" + "@id": "bts:TenosynovialGiantCellTumor;NOS" }, { - "@id": "bts:AerosolizedLiposomalRubitecan" + "@id": "bts:HistologicallyLow-GradeGlioma" }, { - "@id": "bts:Afatinib" + "@id": "bts:Chordoma;NOS;Ganglioneuroblastoma" }, { - "@id": "bts:AfatinibDimaleate" + "@id": "bts:Ependymoma;NOS" }, { - "@id": "bts:Afimoxifene" + "@id": "bts:InvasiveMammaryCarcinoma" }, { - "@id": "bts:Afuresertib" + "@id": "bts:RhabdoidTumor;Malignant" }, { - "@id": "bts:AgatolimodSodium" + "@id": "bts:Medulloblastoma;ClassicHistology" }, { - "@id": "bts:Agerafenib" + "@id": "bts:AdenocarcinomaInVillousAdenoma" }, { - "@id": "bts:AglatimageneBesadenovec" + "@id": "bts:UndifferentiatedSarcoma" }, { - "@id": "bts:AgonisticAnti-CD40MonoclonalAntibodyADC-1013" + "@id": "bts:PapillaryThyroidCarcinoma" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyINCAGN01949" + "@id": "bts:RenalCellAdenocarcinoma" }, { - "@id": "bts:AgonisticAnti-OX40MonoclonalAntibodyMEDI6469" + "@id": "bts:HodgkinLymphoma;NOS" }, { - "@id": "bts:AKR1C3-activatedProdrugOBI-3424" + "@id": "bts:MalignantHistiocytosis" }, { - "@id": "bts:AKT1/2InhibitorBAY1125976" + "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:AKTInhibitorARQ092" + "@id": "bts:SolidPseudopapillaryTumorOfOvary" }, { - "@id": "bts:AktInhibitorLY2780301" + "@id": "bts:AstrocyticGlioma;HistologicallyLow-Grade;MostCompatibleWithPilocyticAstrocytoma" }, { - "@id": "bts:AktInhibitorMK2206" + "@id": "bts:InflammatoryMyofibroblasticTumorWithAnAssociatedOdontogenicKeratocyst" }, { - "@id": "bts:AktInhibitorSR13668" + "@id": "bts:Myofibromatosis" }, { - "@id": "bts:Akt/ERKInhibitorONC201" + "@id": "bts:SmallRoundBlueCellTumor" }, { - "@id": "bts:AlacizumabPegol" + "@id": "bts:Meningioma;Atypical;CNSWHOGrade2" }, { - "@id": "bts:Alanosine" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;AdamantinomatousCraniopharyngioma;Craniopharyngioma" }, { - "@id": "bts:Albumin-bindingCisplatinProdrugBTP-114" + "@id": "bts:PilocyticAstrocytoma" }, { - "@id": "bts:Aldesleukin" + "@id": "bts:LobularAndDuctalCarcinoma" }, { - "@id": "bts:Aldoxorubicin" + "@id": "bts:Desmoplastic/NodularMedulloblastoma(HistologicallyDefined);CNSWHOGrade4" }, { - "@id": "bts:Alectinib" + "@id": "bts:MalignantPeripheralNerveSheathTumorWithRhabdomyoblasticDifferentiation" }, { - "@id": "bts:Alefacept" + "@id": "bts:TumorCells;Malignant;DiffuseLeptomeningealGlioneuronalTumor;GlioneuronalAndNeuronalTumors" }, { - "@id": "bts:Alemtuzumab" + "@id": "bts:MalignantTumor" }, { - "@id": "bts:Alestramustine" + "@id": "bts:BrainTumor" }, { - "@id": "bts:AlflutinibMesylate" + "@id": "bts:GastrointestinalStromalTumor;Benign" }, { - "@id": "bts:Algenpantucel-L" + "@id": "bts:RasmussenEncephalitis" }, { - "@id": "bts:Alisertib" + "@id": "bts:Medulloblastoma;NOS;DiffuseHemisphericGlioma;H3G34-Mutant;High-GradeGlioma" }, { - "@id": "bts:Alitretinoin" + "@id": "bts:Adenocarcinoma;NOS;Glioblastoma;NOS" }, { - "@id": "bts:ALKInhibitor" + "@id": "bts:MalignantPeripheralNerveSheathTumor(Mpnst)" }, { - "@id": "bts:ALKInhibitorASP3026" + "@id": "bts:EmbryonalSarcoma" }, { - "@id": "bts:ALKInhibitorPLB1003" + "@id": "bts:Neoplasm;Malignant;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:ALKInhibitorRO5424802" + "@id": "bts:AnaplasticLargeCellLymphoma;T-CellAndNull-CellType" }, { - "@id": "bts:ALKInhibitorTAE684" + "@id": "bts:Teratoma;NOS" }, { - "@id": "bts:ALKInhibitorWX-0593" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS" }, { - "@id": "bts:ALK-2InhibitorTP-0184" + "@id": "bts:Infiltratingductandlobularcarcinoma" }, { - "@id": "bts:ALK-FAKInhibitorCEP-37440" + "@id": "bts:SclerosingStromalTumor" }, { - "@id": "bts:ALK/c-MetInhibitorTQ-B3139" + "@id": "bts:TumorCells;UncertainWhetherBenignOrMalignant" }, { - "@id": "bts:ALK/FAK/Pyk2InhibitorCT-707" + "@id": "bts:AcuteMyeloidLeukemia;NOS;JuvenileMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:ALK/ROS1/MetInhibitorTQ-B3101" + "@id": "bts:LobularCarcinoma;NOS" }, { - "@id": "bts:ALK/TRKInhibitorTSR-011" + "@id": "bts:Schwannoma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Alkotinib" + "@id": "bts:Sarcoma;NOS" }, { - "@id": "bts:AllodepletedTCellImmunotherapeuticATIR101" + "@id": "bts:CNSEmbryonalTumorWithRhabdoidFeatures" }, { - "@id": "bts:AllogeneicAnti-BCMACAR-transducedT-cellsALLO-715" + "@id": "bts:GlialNeoplasm;Astrocytoma" }, { - "@id": "bts:AllogeneicAnti-BCMA-CART-cellsPBCAR269A" + "@id": "bts:Pancreas-AdenosquamousCarcinoma" }, { - "@id": "bts:AllogeneicAnti-BCMA/CS1BispecificCAR-TCells" + "@id": "bts:MesenchymalLesion" }, { - "@id": "bts:AllogeneicAnti-CD19CART-cellsALLO-501A" + "@id": "bts:SerousAdenocarcinoma;NOS" }, { - "@id": "bts:AllogeneicAnti-CD19UniversalCAR-TCellsCTA101" + "@id": "bts:Hepatoblastoma;NOS" }, { - "@id": "bts:AllogeneicAnti-CD19-CART-cellsPBCAR0191" + "@id": "bts:Astrocytoma;NOS;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:AllogeneicAnti-CD20CART-cellsLUCAR-20S" + "@id": "bts:SexCord-GonadalStromalTumor;NOS" }, { - "@id": "bts:AllogeneicAnti-CD20-CART-cellsPBCAR20A" + "@id": "bts:AdenoidCysticCarcinoma" }, { - "@id": "bts:AllogeneicCD22-specificUniversalCAR-expressingT-lymphocytesUCART22" + "@id": "bts:EmbryonalTumor" }, { - "@id": "bts:AllogeneicCD3-CD19-CD57+NKG2C+NKCellsFATE-NK100" + "@id": "bts:AcuteMyeloidLeukemia;T(8;21)(Q22;Q22)" }, { - "@id": "bts:AllogeneicCD56-positiveCD3-negativeNaturalKillerCellsCYNK-001" + "@id": "bts:SpindledAndEpithelioidTumorWithFeaturesOfIntracranialMesenchymalTumor" }, { - "@id": "bts:AllogeneicCD8+Leukemia-associatedAntigensSpecificTCellsNEXI-001" + "@id": "bts:Cavernoma" }, { - "@id": "bts:AllogeneicCellularVaccine1650-G" + "@id": "bts:MalignantTumor;SmallCellType" }, { - "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-BCMATCellsCTX120" + "@id": "bts:MixedGermCellTumor;CNSGermCellTumors;CNSGerminoma" }, { - "@id": "bts:AllogeneicCRISPR-Cas9EngineeredAnti-CD70CAR-TCellsCTX130" + "@id": "bts:LowGradeNeoplasm.FeaturesSuggestiveOfPilocyticAstrocytoma." }, { - "@id": "bts:AllogeneicCS1-specificUniversalCAR-expressingT-lymphocytesUCARTCS1A" + "@id": "bts:Neoplasm;Malignant;DiffusePediatric-TypeHigh-GradeGlioma;H3-WildtypeAndIDH-Wildtype;High-GradeGlioma" }, { - "@id": "bts:AllogeneicGM-CSF-secretingBreastCancerVaccineSV-BR-1-GM" + "@id": "bts:SerousCarcinoma;NOS" }, { - "@id": "bts:AllogeneicGM-CSF-secretingLethallyIrradiatedProstateCancerVaccine" + "@id": "bts:MetastaticSecondaryTumors" }, { - "@id": "bts:AllogeneicGM-CSF-secretingLethallyIrradiatedWholeMelanomaCellVaccine" + "@id": "bts:YolkSacTumor" }, { - "@id": "bts:AllogeneicGM-CSF-secretingTumorVaccinePANC10.05pcDNA-1/GM-Neo" + "@id": "bts:MorphologicallyConsistentWithPilocyticAstrocytoma;WHOGrade1" }, { - "@id": "bts:AllogeneicGM-CSF-secretingTumorVaccinePANC6.03pcDNA-1/GM-Neo" + "@id": "bts:NeuroendocrineTumor;NOS" }, { - "@id": "bts:AllogeneicIL13-Zetakine/HyTK-Expressing-GlucocorticoidResistantCytotoxicTLymphocytesGRm13Z40-2" + "@id": "bts:MixedGermCellTumor;AcuteMegakaryoblasticLeukemia" }, { - "@id": "bts:AllogeneicIrradiatedMelanomaCellVaccineCSF470" + "@id": "bts:JuvenileMyelomonocyticLeukemia" }, { - "@id": "bts:AllogeneicLargeMultivalentImmunogenMelanomaVaccineLP2307" + "@id": "bts:AcuteMyeloidLeukemiaWithT(9;11)(P22;Q23);MLLT3-MLL" }, { - "@id": "bts:AllogeneicMelanomaVaccineAGI-101H" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;PleomorphicXanthoastrocytoma" }, { - "@id": "bts:AllogeneicNaturalKillerCellLineMG4101" + "@id": "bts:PapillaryGlioneuronalTumor;WHOGrade1" }, { - "@id": "bts:AllogeneicNaturalKillerCellLineNK-92" + "@id": "bts:CentralNeuroblastoma" }, { - "@id": "bts:AllogeneicPlasmacytoidDendriticCellsExpressingLungTumorAntigensPDC*lung01" + "@id": "bts:DysembryoplasticNeuroepithelialTumor" }, { - "@id": "bts:AllogeneicRenalCellCarcinomaVaccineMGN1601" + "@id": "bts:MixedAdenocarcinomaAndSquamousCellCarcinoma;Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:AllogeneicThird-partySuicideGene-transducedAnti-HLA-DPB1*0401CD4+T-cellsCTL19" + "@id": "bts:SubcutaneousPanniculitis-LikeT-CellLymphoma" }, { - "@id": "bts:AllostericErbBInhibitorBDTX-189" + "@id": "bts:MyofibroblasticTumor" }, { - "@id": "bts:Allovectin-7" + "@id": "bts:Nephroblastoma;NOS" }, { - "@id": "bts:Almurtide" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Medulloblastoma;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:Alobresib" + "@id": "bts:MalignantMelanoma;NOS;MeningealMelanocyticNeoplasms(IncludesMelanoma);Other" }, { - "@id": "bts:Alofanib" + "@id": "bts:Carcinoma;Metastatic;NOS" }, { - "@id": "bts:Alpelisib" + "@id": "bts:FollicularCarcinoma;MinimallyInvasive" }, { - "@id": "bts:AlphaGalactosylceramide" + "@id": "bts:Angiomyofibroblastoma" }, { - "@id": "bts:AlphaVBeta1InhibitorATN-161" + "@id": "bts:ClassicMedulloblastoma;CNSWHOGrade4" }, { - "@id": "bts:AlphaVBeta8AntagonistPF-06940434" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:Alpha-FolateReceptor-targetingThymidylateSynthaseInhibitorONX-0801" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor;ATRT-MYC" }, { - "@id": "bts:Alpha-GalAGI-134" + "@id": "bts:Astroblastoma" }, { - "@id": "bts:Alpha-lactalbumin-derivedSyntheticPeptide-lipidComplexAlpha1H" + "@id": "bts:MeningothelialMeningioma;Meningioma;Other" }, { - "@id": "bts:Alpha-ThioguanineDeoxyriboside" + "@id": "bts:PoorlyDifferentiatedChordoma" }, { - "@id": "bts:Alpha-tocopheryloxyaceticAcid" + "@id": "bts:ChronicMyelogenousLeukemia" }, { - "@id": "bts:Alsevalimab" + "@id": "bts:PleomorphicSarcoma" }, { - "@id": "bts:Altiratinib" + "@id": "bts:SupratentorialEpendymomaCNSWHOGrade3" }, { - "@id": "bts:Altretamine" + "@id": "bts:LeydigCellTumor;NOS" }, { - "@id": "bts:Alvespimycin" + "@id": "bts:Adenosarcoma" }, { - "@id": "bts:AlvespimycinHydrochloride" + "@id": "bts:PigmentedDermatofibrosarcomaProtuberans" }, { - "@id": "bts:Alvocidib" + "@id": "bts:Astrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:AlvocidibHydrochloride" + "@id": "bts:Astrocytoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:AlvocidibProdrugTP-1287" + "@id": "bts:Astrocytoma;NOS;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:Amatuximab" + "@id": "bts:Myxofibrosarcoma" }, { - "@id": "bts:Ambamustine" + "@id": "bts:PrecursorT-CellLymphoblasticLeukemia" }, { - "@id": "bts:Ambazone" + "@id": "bts:Neurocytoma" }, { - "@id": "bts:Amblyomin-X" + "@id": "bts:AdrenalCorticalTumor;NOS" }, { - "@id": "bts:Amcasertib" + "@id": "bts:Neoplasm;Malignant;ATRT-SHH;AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Ametantrone" + "@id": "bts:AcuteMyeloidLeukemia(Megakaryoblastic)WithT(1;22)(P13;Q13);RBM15-MKL1" }, { - "@id": "bts:Amifostine" + "@id": "bts:Neoplasm;Malignant;CNSNeuroblastoma;FOXR2-Activated;OtherCNSEmbryonalTumors" }, { - "@id": "bts:AminoAcidInjection" + "@id": "bts:Infiltratingductandmucinouscarcinoma" }, { - "@id": "bts:Aminocamptothecin" + "@id": "bts:AdenocarcinomaInSitu;NOS" }, { - "@id": "bts:AminocamptothecinColloidalDispersion" + "@id": "bts:MucinousAdenocarcinoma" }, { - "@id": "bts:AminoflavoneProdrugAFP464" + "@id": "bts:Retinoblastoma;NOS" }, { - "@id": "bts:Aminopterin" + "@id": "bts:AnaplasticEpendymoma" }, { - "@id": "bts:AminopterinSodium" + "@id": "bts:GermCellTumor;Nonseminomatous;CNSGermCellTumors;CNSNon-GerminomatousGermCellTumor" }, { - "@id": "bts:Amivantamab" + "@id": "bts:AcuteMonoblasticAndMonocyticLeukemia" }, { - "@id": "bts:AmolimogeneBepiplasmid" + "@id": "bts:Hemangioblastoma;CNSWHOGrade1" }, { - "@id": "bts:AmonafideL-Malate" + "@id": "bts:AlveolarRhabdomyosarcoma" }, { - "@id": "bts:Amrubicin" + "@id": "bts:MedullaryCarcinoma;NOS" }, { - "@id": "bts:AmrubicinHydrochloride" + "@id": "bts:AdultGranulosaCellTumorOfTestis" }, { - "@id": "bts:Amsacrine" + "@id": "bts:Medulloblastoma;WHOGrade4" }, { - "@id": "bts:AmsacrineLactate" + "@id": "bts:Craniopharyngioma;Adamantinomatous" }, { - "@id": "bts:Amsilarotene" + "@id": "bts:HighGradeMalignantPeripheralNerveSheathTumorWithHeterologousRhabdomyoblasticDifferentiation(MalignantTritonTumor)" }, { - "@id": "bts:Amustaline" + "@id": "bts:SpindleCellRhabdomyosaroma" }, { - "@id": "bts:AmustalineDihydrochloride" + "@id": "bts:DiffuseMidlineGlioma;H3K27M-Mutant" }, { - "@id": "bts:Amuvatinib" + "@id": "bts:EpithelioidSarcoma;NOS" }, { - "@id": "bts:AmuvatinibHydrochloride" + "@id": "bts:MyoepithelialCarcinoma" }, { - "@id": "bts:Anakinra" + "@id": "bts:MultipleMyeloma" }, { - "@id": "bts:Anastrozole" + "@id": "bts:Triple-NegativeBreastCarcinoma" }, { - "@id": "bts:Anaxirone" + "@id": "bts:HepatocellularCarcinoma;NOS;Nephroblastoma;NOS" }, { - "@id": "bts:Ancitabine" + "@id": "bts:Neuroblastoma;SchwannianStromaPoor;PoorlyDifferentiated;LowMKI;FavorableHistology" }, { - "@id": "bts:AncitabineHydrochloride" + "@id": "bts:SertoliCellTumor;NOS" }, { - "@id": "bts:Andecaliximab" + "@id": "bts:OssifyingFibroma" }, { - "@id": "bts:AndrogenAntagonistAPC-100" + "@id": "bts:PleomorphicLiposarcoma" }, { - "@id": "bts:AndrogenReceptorAntagonistBAY1161116" + "@id": "bts:AmelanoticMelanoma" }, { - "@id": "bts:AndrogenReceptorAntagonistSHR3680" + "@id": "bts:Liposarcoma;NOS" }, { - "@id": "bts:AndrogenReceptorAntagonistTAS3681" + "@id": "bts:Non-GerminomatousGermCellTumor" }, { - "@id": "bts:AndrogenReceptorAntagonistTRC253" + "@id": "bts:LactotrophAdenoma" }, { - "@id": "bts:AndrogenReceptorAntisenseOligonucleotideAZD5312" + "@id": "bts:TransientAbnormalMyelopoiesis" }, { - "@id": "bts:AndrogenReceptorAntisenseOligonucleotideEZN-4176" + "@id": "bts:FavorPosteriorFossaEpendymoma;WHOGRADE3" }, { - "@id": "bts:AndrogenReceptorDegraderARV-110" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:AndrogenReceptorDegraderCC-94676" + "@id": "bts:CarcinomaInSitu;NOS" }, { - "@id": "bts:AndrogenReceptorDownregulatorAZD3514" + "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:AndrogenReceptorInhibitorEPI-7386" + "@id": "bts:Ependymoma;Anaplastic" }, { - "@id": "bts:AndrogenReceptorLigand-bindingDomain-encodingPlasmidDNAVaccineMVI-118" + "@id": "bts:GlialNeoplasm;FavorPilocyticAstrocytoma" }, { - "@id": "bts:AndrogenReceptor/GlucocorticoidReceptorAntagonistCB-03-10" + "@id": "bts:GastrointestinalStromalTumor;NOS" }, { - "@id": "bts:Andrographolide" + "@id": "bts:SerousCystadenocarcinoma;NOS" }, { - "@id": "bts:AndrostaneSteroidHE3235" + "@id": "bts:PapillaryLesionWithAtypical/HighGradeFeatures" }, { - "@id": "bts:AnetumabRavtansine" + "@id": "bts:SpinalEpendymoma;WHOGrade2" }, { - "@id": "bts:Ang2/VEGF-BindingPeptides-AntibodyFusionProteinCVX-241" + "@id": "bts:DuctalCarcinomaInSitu;NOS" }, { - "@id": "bts:AngiogenesisInhibitorGT-111" + "@id": "bts:InfiltratingDuctalCarcinoma" }, { - "@id": "bts:AngiogenesisInhibitorJI-101" + "@id": "bts:MixedTypeRhabdomyosarcoma" }, { - "@id": "bts:Angiogenesis/HeparanaseInhibitorPG545" + "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Mutant" }, { - "@id": "bts:Angiopoietin-2-specificFusionProteinPF-04856884" + "@id": "bts:PrecursorB-CellAcuteLymphoblasticLeukemiaWithHyperdiploidy" }, { - "@id": "bts:AnhydrousEnol-oxaloacetate" + "@id": "bts:MesenchymalChondrosarcoma;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Anhydrovinblastine" + "@id": "bts:CribriformCarcinoma;NOS" }, { - "@id": "bts:AnilineMustard" + "@id": "bts:MyxopapillaryEpendymoma;Anaplastic" }, { - "@id": "bts:AnlotinibHydrochloride" + "@id": "bts:Ependymoma;Anaplastic;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:Annamycin" + "@id": "bts:Astrocytoma;IDH-Mutant;WHOGrade2" }, { - "@id": "bts:AnnamycinLiposomal" + "@id": "bts:Meningioangiomatosis" }, { - "@id": "bts:AnnonaceousAcetogenins" + "@id": "bts:AcuteMyeloidLeukemia;NOS;MyeloproliferativeNeoplasm;Unclassifiable" }, { - "@id": "bts:AnsamitomicinP-3" + "@id": "bts:Endometrioidcarcinoma;NOS" }, { - "@id": "bts:Anthramycin" + "@id": "bts:AdenocarcinomaInSitu;Non-Mucinous" }, { - "@id": "bts:Anthrapyrazole" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;Group4" }, { - "@id": "bts:Antic-KITAntibody-drugConjugateLOP628" + "@id": "bts:PapillaryCarcinoma;FollicularVariant" }, { - "@id": "bts:Anti-5T4Antibody-drugConjugateASN004" + "@id": "bts:MetaplasticCarcinoma;NOS" }, { - "@id": "bts:Anti-5T4Antibody-DrugConjugatePF-06263507" + "@id": "bts:ChoroidPlexusCarcinoma;ChoroidPlexusTumors" }, { - "@id": "bts:Anti-5T4Antibody-drugConjugateSYD1875" + "@id": "bts:PoorlyDifferentiatedSertoli-LeydigCellTumorWithHeterologousRhabdomyosarcomatousDifferentiation" }, { - "@id": "bts:Anti-A33MonoclonalAntibodyKRN330" + "@id": "bts:LowGradeGlioma" }, { - "@id": "bts:Anti-A5B1IntegrinMonoclonalAntibodyPF-04605412" + "@id": "bts:SexCordStromalTumorNOS" }, { - "@id": "bts:Anti-ACTR/4-1BB/CD3zeta-ViralVector-transducedAutologousT-LymphocytesACTR087" + "@id": "bts:StromaPoor;PoorlyDifferentiatedNeuroblastomaWithLowMKI;FavorableHistology" }, { - "@id": "bts:Anti-AG7AntibodyDrugConjugateAbGn-107" + "@id": "bts:ResidualLowGradeNeuroendocrineTumor(TypicalCarcinoid)" }, { - "@id": "bts:Anti-AGS-16MonoclonalAntibodyAGS-16M18" + "@id": "bts:MelanoticNeuroectodermalTumor" }, { - "@id": "bts:Anti-AGS-5Antibody-DrugConjugateASG-5ME" + "@id": "bts:Ependymoma;NOS;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Anti-AGS-8MonoclonalAntibodyAGS-8M4" + "@id": "bts:Glioma;Malignant;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:Anti-alphaBCMA/Anti-alphaCD3T-cellEngagingBispecificAntibodyTNB-383B" + "@id": "bts:MalignantLymphoma;NOS" }, { - "@id": "bts:Anti-alpha5beta1IntegrinAntibodyMINT1526A" + "@id": "bts:MedulloblastomaWHOGrade4" }, { - "@id": "bts:Anti-ANG2MonoclonalAntibodyMEDI-3617" + "@id": "bts:ChoroidPlexusPapillaryTumor" }, { - "@id": "bts:Anti-angiopoietinMonoclonalAntibodyAMG780" + "@id": "bts:FollicularAdenocarcinoma;WellDifferentiated;Neuroblastoma;NOS" }, { - "@id": "bts:Anti-APRILMonoclonalAntibodyBION-1301" + "@id": "bts:NeuroepithelialTumor" }, { - "@id": "bts:Anti-AXLFusionProteinAVB-S6-500" + "@id": "bts:MyelodysplasticSyndromeWithMultilineageDysplasia" }, { - "@id": "bts:Anti-AXL/PBDAntibody-drugConjugateADCT-601" + "@id": "bts:PrimaryMediastinal(Thymic)LargeB-CellLymphoma" }, { - "@id": "bts:Anti-B7-H3AntibodyDS-5573a" + "@id": "bts:MastCellLeukemia" }, { - "@id": "bts:Anti-B7-H3/DXdAntibody-drugConjugateDS-7300a" + "@id": "bts:Ganglioneuroblastoma" }, { - "@id": "bts:Anti-B7-H4MonoclonalAntibodyFPA150" + "@id": "bts:Pheochromocytoma;NOS" }, { - "@id": "bts:Anti-B7H3Antibody-drugConjugateMGC018" + "@id": "bts:PapillarySerousAdenocarcinoma" }, { - "@id": "bts:Anti-BCMAAntibodySEA-BCMA" + "@id": "bts:MixedGermCellTumor" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateAMG224" + "@id": "bts:LymphoidLeukemia;NOS" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateCC-99712" + "@id": "bts:EpendymomaNOS" }, { - "@id": "bts:Anti-BCMAAntibody-drugConjugateGSK2857916" + "@id": "bts:SmoothMuscleTumorOfUncertainMalignantPotential" }, { - "@id": "bts:Anti-BCMASparXProteinPlusBCMA-directedAnti-TAAGARCT-cellsCART-ddBCMA" + "@id": "bts:CombinedSmallCell-LargeCarcinoma" }, { - "@id": "bts:Anti-BCMA/Anti-CD3BispecificAntibodyREGN5459" + "@id": "bts:SertoliLeydigCellTumor" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG420" + "@id": "bts:AnaplasticLargeCellLymphoma;ALKPositive" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyAMG701" + "@id": "bts:Meningioma;Malignant" }, { - "@id": "bts:Anti-BCMA/CD3BiTEAntibodyREGN5458" + "@id": "bts:RhabdoidTumor;NOS" }, { - "@id": "bts:Anti-BCMA/PBDADCMEDI2228" + "@id": "bts:MerkelCellCarcinoma" }, { - "@id": "bts:Anti-BTLAMonoclonalAntibodyTAB004" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Meningioma;Other" }, { - "@id": "bts:Anti-BTN3AAgonisticMonoclonalAntibodyICT01" + "@id": "bts:Lymphoma;NOS" }, { - "@id": "bts:Anti-c-fmsMonoclonalAntibodyAMG820" + "@id": "bts:Gangliocytoma;NOS" }, { - "@id": "bts:Anti-c-KITMonoclonalAntibodyCDX0158" + "@id": "bts:Glioblastoma;NOS;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Anti-c-MetAntibody-drugConjugateHTI-1066" + "@id": "bts:MucinousNon-CysticCarcinoma" }, { - "@id": "bts:Anti-c-MetAntibody-drugConjugateTR1801" + "@id": "bts:MucinousCarcinoma" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyABT-700" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyARGX-111" + "@id": "bts:Ganglioglioma;NOS;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Anti-c-MetMonoclonalAntibodyHLX55" + "@id": "bts:HighGradeCarcinosarcoma" }, { - "@id": "bts:Anti-c-METMonoclonalAntibodyLY2875358" + "@id": "bts:SubependymalGiantCellAstrocytoma;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:Anti-C-metMonoclonalAntibodySAIT301" + "@id": "bts:SquamousCellCarcinoma;Metastatic;NOS" }, { - "@id": "bts:Anti-C4.4aAntibody-DrugConjugateBAY1129980" + "@id": "bts:MyeloidLeukemiaAssociatedWithDownSyndrome" }, { - "@id": "bts:Anti-C5aRMonoclonalAntibodyIPH5401" + "@id": "bts:MeningealMelanomatosis" }, { - "@id": "bts:Anti-CA19-9MonoclonalAntibody5B1" + "@id": "bts:NeuroepithelialTumorWithGlioneuronal-LikeFeatures" }, { - "@id": "bts:Anti-CA6-DM4ImmunoconjugateSAR566658" + "@id": "bts:SquamousCellCarcinoma;LargeCell;Nonkeratinizing;NOS" }, { - "@id": "bts:Anti-CCR7Antibody-drugConjugateJBH492" + "@id": "bts:Meningiomatosis;NOS" }, { - "@id": "bts:Anti-CD117MonoclonalAntibodyJSP191" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Anti-CD122HumanizedMonoclonalAntibodyMik-Beta-1" + "@id": "bts:Oligodendroglioma;NOS;Low-GradeGlioma;Oligodendroglioma;IDH-Mutant;And1p/19q-Codeleted" }, { - "@id": "bts:Anti-CD123ADCIMGN632" + "@id": "bts:Ependymoma;NOS;PosteriorFossaEpendymoma;GroupPFA" }, { - "@id": "bts:Anti-CD123MonoclonalAntibodyCSL360" + "@id": "bts:CNSEmbryonalTumor;NOS" }, { - "@id": "bts:Anti-CD123MonoclonalAntibodyKHK2823" + "@id": "bts:FavorAnaplasticEpendymoma" }, { - "@id": "bts:Anti-CD123xAnti-CD3BispecificAntibodyXmAb1404" + "@id": "bts:DiffuseGlioma" }, { - "@id": "bts:Anti-CD123-PyrrolobenzodiazepineDimerAntibodyDrugConjugateSGN-CD123A" + "@id": "bts:AdamantinomatousCraniopharyngioma(CNSWHOGrade1)" }, { - "@id": "bts:Anti-CD123/CD3BispecificAntibodyAPVO436" + "@id": "bts:Medulloblastoma;ClassicVariant;WHOGrade4" }, { - "@id": "bts:Anti-CD123/CD3BispecificAntibodyJNJ-63709178" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Astrocytoma;IDH-Mutant;Low-GradeGlioma" }, { - "@id": "bts:Anti-CD123/CD3BiTEAntibodySAR440234" + "@id": "bts:GlioneuronalTumorWithFocalIncreasedAtypia" }, { - "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyADG106" + "@id": "bts:HighGradeNeuroepithelialTumor" }, { - "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyAGEN2373" + "@id": "bts:SquamousCellCarcinoma;SmallCell;Nonkeratinizing" }, { - "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyATOR-1017" + "@id": "bts:MixedPhenotypeAcuteLeukemiaWithT(V;11q23);MLLRearranged" }, { - "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyCTX-471" + "@id": "bts:AcuteMyeloidLeukemia;MinimalDifferentiation" }, { - "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyLVGN6051" + "@id": "bts:FibrillaryAstrocytoma" }, { - "@id": "bts:Anti-CD157MonoclonalAntibodyMEN1112" + "@id": "bts:Chordoma;NOS" }, { - "@id": "bts:Anti-CD166Probody-drugConjugateCX-2009" + "@id": "bts:UndifferentiatedLeukemia" }, { - "@id": "bts:Anti-CD19Antibody-drugConjugateSGN-CD19B" + "@id": "bts:Myofibroma" }, { - "@id": "bts:Anti-CD19Antibody-T-cellReceptor-expressingT-cellsET019003" + "@id": "bts:Neoplasm;Malignant" }, { - "@id": "bts:Anti-CD19iCARNKCells" + "@id": "bts:PleomorphicXanthoastrocytoma;NOS;Low-GradeGlioma" }, { - "@id": "bts:Anti-CD19MonoclonalAntibodyDI-B4" + "@id": "bts:InvasiveDuctalCarcinoma" }, { - "@id": "bts:Anti-CD19MonoclonalAntibodyMDX-1342" + "@id": "bts:SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:Anti-CD19MonoclonalAntibodyMEDI-551" + "@id": "bts:EmbryonalRhabdomyosarcomaWithAnaplasticFeatures" }, { - "@id": "bts:Anti-CD19MonoclonalAntibodyXmAb5574" + "@id": "bts:High-GradeNeuroepithelialTumor" }, { - "@id": "bts:Anti-CD19-DM4ImmunoconjugateSAR3419" + "@id": "bts:LowGradeGlioneuronalTumor" }, { - "@id": "bts:Anti-CD19/Anti-CD22BispecificImmunotoxinDT2219ARL" + "@id": "bts:Neoplasm;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:Anti-CD19/CD22CARNKCells" + "@id": "bts:AcuteMyeloidLeukemiaWithoutMaturation" }, { - "@id": "bts:Anti-CD19/CD3BiTEAntibodyAMG562" + "@id": "bts:AdenocarcinomaWithMixedSubtypes" }, { - "@id": "bts:Anti-CD19/CD3TetravalentAntibodyAFM11" + "@id": "bts:BLymphoblasticLeukemia/LymphomaWithHyperdiploidy" }, { - "@id": "bts:Anti-CD20MonoclonalAntibodyB001" + "@id": "bts:MalignantPeripheralNerveSheathTumor;NOS" }, { - "@id": "bts:Anti-CD20MonoclonalAntibodyBAT4306F" + "@id": "bts:Hemangiosarcoma" }, { - "@id": "bts:Anti-CD20MonoclonalAntibodyMIL62" + "@id": "bts:Paraganglioma;NOS" }, { - "@id": "bts:Anti-CD20MonoclonalAntibodyPRO131921" + "@id": "bts:Medulloblastoma;Nodular/DesmoplasticWithAnaplastic/LargeCellFeatures;Non-WNT/Non-SHH;WHOGrade4" }, { - "@id": "bts:Anti-CD20MonoclonalAntibodySCT400" + "@id": "bts:SignetRingCellCarcinoma" }, { - "@id": "bts:Anti-CD20MonoclonalAntibodyTL011" + "@id": "bts:SpindleCellMelanoma;NOS" }, { - "@id": "bts:Anti-CD20MonoclonalAntibody-Interferon-alphaFusionProteinIGN002" + "@id": "bts:LobularAdenocarcinoma" }, { - "@id": "bts:Anti-CD20-engineeredToxinBodyMT-3724" + "@id": "bts:UndiagnosedSpindleCellTumor" }, { - "@id": "bts:Anti-CD20/Anti-CD3BispecificIgMAntibodyIGM2323" + "@id": "bts:PilocyticAstrocytoma;WHOGrade1;KIAA1549-BRAFFusion" }, { - "@id": "bts:Anti-CD20/CD3MonoclonalAntibodyREGN1979" + "@id": "bts:Meningioma" }, { - "@id": "bts:Anti-CD20/CD3MonoclonalAntibodyXmAb13676" + "@id": "bts:HepatosplenicT-CellLymphoma;PrecursorCellLymphoblasticLeukemia;NOS" }, { - "@id": "bts:Anti-CD205Antibody-drugConjugateOBT076" + "@id": "bts:MesenchymalChondrosarcoma" }, { - "@id": "bts:Anti-CD22ADCTRPH-222" + "@id": "bts:AnaplasticGanglioglioma" }, { - "@id": "bts:Anti-CD22MonoclonalAntibody-MMAEConjugateDCDT2980S" + "@id": "bts:Osteosarcoma;NOS" }, { - "@id": "bts:Anti-CD228/MMAEAntibody-drugConjugateSGN-CD228A" + "@id": "bts:Oligoastrocytoma;NOS;GlioneuronalAndNeuronalTumors;GlioneuronalAndNeuronalTumors;NOSOrNEC" }, { - "@id": "bts:Anti-CD25MonoclonalAntibodyRO7296682" + "@id": "bts:EpendymomaWHOGrade3" }, { - "@id": "bts:Anti-CD25-PBDAntibody-drugConjugateADCT-301" + "@id": "bts:LungAdenocarcinoma;NOS" }, { - "@id": "bts:Anti-CD26MonoclonalAntibodyYS110" + "@id": "bts:LymphoproliferativeDisorder;NOS" }, { - "@id": "bts:Anti-CD27AgonisticMonoclonalAntibodyMK-5890" + "@id": "bts:AtypicalLymphoidInfiltrate" }, { - "@id": "bts:Anti-CD27LAntibody-DrugConjugateAMG172" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:Anti-CD3ImmunotoxinA-dmDT390-bisFv(UCHT1)" + "@id": "bts:GenitalRhabdomyoma" }, { - "@id": "bts:Anti-CD3/Anti-5T4BispecificAntibodyGEN1044" + "@id": "bts:ChondroblasticOsteosarcoma" }, { - "@id": "bts:Anti-CD3/Anti-BCMABispecificMonoclonalAntibodyJNJ-64007957" + "@id": "bts:Neuroepithelioma;NOS" }, { - "@id": "bts:Anti-CD3/Anti-BCMABispecificMonoclonalAntibodyPF-06863135" + "@id": "bts:MalignantEpithelioidAndMyxoidNeoplasm" }, { - "@id": "bts:Anti-CD3/Anti-CD20TrifunctionalBispecificMonoclonalAntibodyFBTA05" + "@id": "bts:Pancreatoblastoma" }, { - "@id": "bts:Anti-CD3/Anti-GPRC5DBispecificMonoclonalAntibodyJNJ-64407564" + "@id": "bts:Nephroblastoma(WilmsTumor)" }, { - "@id": "bts:Anti-CD3/Anti-GUCY2CBispecificAntibodyPF-07062119" + "@id": "bts:MalignantGlioma" }, { - "@id": "bts:Anti-CD3/CD20BispecificAntibodyGEN3013" + "@id": "bts:EwingSarcoma" }, { - "@id": "bts:Anti-CD3/CD38BispecificMonoclonalAntibodyAMG424" + "@id": "bts:AtypicalSmoothMuscleNeoplasm" }, { - "@id": "bts:Anti-CD3/CD7-RicinToxinAImmunotoxin" + "@id": "bts:AcuteMyelomonocyticLeukemia;NOS" }, { - "@id": "bts:Anti-CD30MonoclonalAntibodyMDX-1401" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;PilocyticAstrocytoma" }, { - "@id": "bts:Anti-CD30MonoclonalAntibodyXmAb2513" + "@id": "bts:EpithelialTumor;Benign" }, { - "@id": "bts:Anti-CD30/CD16AMonoclonalAntibodyAFM13" + "@id": "bts:FavorTeratoma" }, { - "@id": "bts:Anti-CD30/DM1Antibody-drugConjugateF0002" + "@id": "bts:MalignantNeoplasmOfProstate" }, { - "@id": "bts:Anti-CD32BMonoclonalAntibodyBI-1206" + "@id": "bts:Non-ClearCellRenalCellCarcinoma" }, { - "@id": "bts:Anti-CD33Antibody-drugConjugateIMGN779" + "@id": "bts:Meningioma;NOS;EmbryonalTumorWithMultilayeredRosettes;NOS;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Anti-CD33Antigen/CD3ReceptorBispecificMonoclonalAntibodyAMV564" + "@id": "bts:MelanoticSchwannoma;Other" }, { - "@id": "bts:Anti-CD33MonoclonalAntibodyBI836858" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;WNT-Activated" }, { - "@id": "bts:Anti-CD33MonoclonalAntibody-DM4ConjugateAVE9633" + "@id": "bts:CarcinosarcomaNOS" }, { - "@id": "bts:Anti-CD33/CD3BispecificAntibodyGEM333" + "@id": "bts:Plasmacytoma;Extramedullary" }, { - "@id": "bts:Anti-CD33/CD3BispecificAntibodyJNJ-67571244" + "@id": "bts:InfantileFibrosarcoma" }, { - "@id": "bts:Anti-CD33/CD3BiTEAntibodyAMG330" + "@id": "bts:Glioma;Malignant;High-GradeGlioma;High-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Anti-CD33/CD3BiTEAntibodyAMG673" + "@id": "bts:CNSPrimativeNeuroectodermalTumor(PNET)" }, { - "@id": "bts:Anti-CD352Antibody-drugConjugateSGN-CD352A" + "@id": "bts:Infiltratingductcarcinoma;NOS" }, { - "@id": "bts:Anti-CD37Antibody-DrugConjugateIMGN529" + "@id": "bts:PrecursorB-CellLymphoblasticLeukemia" }, { - "@id": "bts:Anti-CD37BispecificMonoclonalAntibodyGEN3009" + "@id": "bts:SquamousCellCarcinomaInSitu;NOS" }, { - "@id": "bts:Anti-CD37MMAEAntibody-drugConjugateAGS67E" + "@id": "bts:AcuteMyeloidLeukemia;T(16;16)(P13;Q11)" }, { - "@id": "bts:Anti-CD37MonoclonalAntibodyBI836826" + "@id": "bts:PapillaryTransitionalCellCarcinoma" }, { - "@id": "bts:Anti-CD38Antibody-drugConjugateSTI-6129" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:Anti-CD38MonoclonalAntibodyMOR03087" + "@id": "bts:Low-GradeGlioneuronal;NeuronalTumor" }, { - "@id": "bts:Anti-CD38MonoclonalAntibodySAR442085" + "@id": "bts:CombinedSmallCell-Adenocarcinoma" }, { - "@id": "bts:Anti-CD38MonoclonalAntibodyTAK-079" + "@id": "bts:HepatocellularCarcinoma;NOS" }, { - "@id": "bts:Anti-CD38-targetedIgG4-attenuatedIFNaTAK-573" + "@id": "bts:SpindleCellCarcinoma;NOS" }, { - "@id": "bts:Anti-CD38/CD28xCD3Tri-specificMonoclonalAntibodySAR442257" + "@id": "bts:Carcinoma;DiffuseType" }, { - "@id": "bts:Anti-CD38/CD3BispecificMonoclonalAntibodyGBR1342" + "@id": "bts:LentiginousMelanocyticNevus" }, { - "@id": "bts:Anti-CD39MonoclonalAntibodySRF617" + "@id": "bts:Glioma;Malignant;EmbryonalTumorWithMultilayeredRosettes;C19MCAltered;OtherCNSEmbryonalTumors" }, { - "@id": "bts:Anti-CD39MonoclonalAntibodyTTX-030" + "@id": "bts:SolitaryFibrousTumor;NOS" }, { - "@id": "bts:Anti-CD40AgonistMonoclonalAntibodyABBV-927" + "@id": "bts:Glioma;Malignant;Medulloblastoma;Medulloblastoma;Non-WNT/Non-SHH" }, { - "@id": "bts:Anti-CD40AgonistMonoclonalAntibodyCDX-1140" + "@id": "bts:GranulosaCellTumor;Malignant" }, { - "@id": "bts:Anti-CD40MonoclonalAntibodyChiLob7/4" + "@id": "bts:Ganglioneuroma;MaturingType;FavorableHistology" }, { - "@id": "bts:Anti-CD40MonoclonalAntibodySEA-CD40" + "@id": "bts:InvasiveLobularCarcinoma" }, { - "@id": "bts:Anti-CD40/Anti-4-1BBBispecificAgonistMonoclonalAntibodyGEN1042" + "@id": "bts:Ganglioglioma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:Anti-CD40/Anti-TAABispecificMonoclonalAntibodyABBV-428" + "@id": "bts:BlandMyofibroblasticProliferationWithAssociatedFloridLymphoplasmacyticInflammation" }, { - "@id": "bts:Anti-CD40LFc-FusionProteinBMS-986004" + "@id": "bts:Medulloblastoma" }, { - "@id": "bts:Anti-CD44MonoclonalAntibodyRO5429083" + "@id": "bts:Hepatoblastoma" }, { - "@id": "bts:Anti-CD45MonoclonalAntibodyAHN-12" + "@id": "bts:LowGradeGlial/GlioneuronalTumor" }, { - "@id": "bts:Anti-CD46Antibody-drugConjugateFOR46" + "@id": "bts:AtypicalTeratoidRhabdoidTumor;CNSWHOGrade4" }, { - "@id": "bts:Anti-CD47ADCSGN-CD47M" + "@id": "bts:Oligoastrocytoma;NOS;Other;OtherCNSTumor;NOSOrNEC" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodyAO-176" + "@id": "bts:DiffuseGlioma;FavorHighGrade" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodyCC-90002" + "@id": "bts:ReactiveConnectiveTissue" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodyHu5F9-G4" + "@id": "bts:Medulloblastoma;NOS;Medulloblastoma;SHH-ActivatedAndTP53-Mutant" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodyIBI188" + "@id": "bts:TumorCells;Malignant;Medulloblastoma;Medulloblastoma;NOSOrNEC" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodyIMC-002" + "@id": "bts:Glioma;Malignant;MalignantPeripheralNerveSheathTumor;NOS" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodySHR-1603" + "@id": "bts:Melanoma;NOS" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodySRF231" + "@id": "bts:MalignantMelanocyticNeoplasm" }, { - "@id": "bts:Anti-CD47MonoclonalAntibodyTJC4" + "@id": "bts:ChronicMyelogenousLeukemia;BCR/ABLPositive" }, { - "@id": "bts:Anti-CD47/CD19BispecificMonoclonalAntibodyTG-1801" + "@id": "bts:VascularLesion;ConsistentWithHemangioma" }, { - "@id": "bts:Anti-CD48/MMAEAntibody-drugConjugateSGN-CD48A" + "@id": "bts:SmallCellNeuroendocrineCarcinoma" }, { - "@id": "bts:Anti-CD52MonoclonalAntibodyALLO-647" + "@id": "bts:MedullaryCarcinoma" }, { - "@id": "bts:Anti-CD70Antibody-DrugConjugateMDX-1203" + "@id": "bts:AnaplasticAstrocytoma;IDH-Wildtype;Glioblastoma;IDHWildtype" }, { - "@id": "bts:Anti-CD70Antibody-drugConjugateSGN-CD70A" + "@id": "bts:Rhabdomyosarcoma;EmbryonalSubtype" }, { - "@id": "bts:Anti-CD70CAR-expressingTLymphocytes" + "@id": "bts:MedulloblastomaByMorphology;NON-WNTByImmunohistochemistry" }, { - "@id": "bts:Anti-CD70MonoclonalAntibodyMDX-1411" + "@id": "bts:Glioma;Malignant;Astrocytoma;IDH-Mutant;High-GradeGlioma" }, { - "@id": "bts:Anti-CD71/vcMMAEProbody-drugConjugateCX-2029" + "@id": "bts:Ganglioglioma;NOS" }, { - "@id": "bts:Anti-CD73MonoclonalAntibodyBMS-986179" + "@id": "bts:DysembryoplasticNeuroepithelialTumor;AngiocentricGlioma;Low-GradeGlioma" }, { - "@id": "bts:Anti-CD73MonoclonalAntibodyCPI-006" + "@id": "bts:Neoplasm;UncertainWhetherBenignOrMalignant;Low-GradeGlioma;Low-GradeGlioma;NOSOrNEC" }, { - "@id": "bts:Anti-CD73MonoclonalAntibodyNZV930" + "@id": "bts:AngiomatoidFibrousHistiocytoma" }, { - "@id": "bts:Anti-CD73MonoclonalAntibodyTJ4309" + "@id": "bts:MicropapillaryCarcinoma;NOS" }, { - "@id": "bts:Anti-CD74Antibody-drugConjugateSTRO-001" + "@id": "bts:InfiltratingLobularCarcinoma;NOS" }, { - "@id": "bts:Anti-CD98MonoclonalAntibodyIGN523" + "@id": "bts:GastrointestinalStromalTumor" }, { - "@id": "bts:Anti-CDH6Antibody-drugConjugateHKT288" + "@id": "bts:DesmoplasticNodularMedulloblastoma;Medulloblastoma;Medulloblastoma;Group4" }, { - "@id": "bts:Anti-CEABiTEMonoclonalAntibodyAMG211" + "@id": "bts:Craniopharyngioma" }, { - "@id": "bts:Anti-CEA/Anti-DTPA-In(F6-734)BispecificAntibody" + "@id": "bts:Sertoli-LeydigCellTumor;IntermediateDifferentiation;WithHeterologousElements" }, { - "@id": "bts:Anti-CEA/Anti-HSGBispecificMonoclonalAntibodyTF2" + "@id": "bts:AcuteMyeloidLeukemia;Inv(16)(P13;Q22)" }, { - "@id": "bts:Anti-CEACAM1MonoclonalAntibodyCM-24" + "@id": "bts:Subependymoma" }, { - "@id": "bts:Anti-CEACAM5Antibody-DrugConjugateSAR408701" + "@id": "bts:GliomatosisCerebri" }, { - "@id": "bts:Anti-CEACAM6AFAIKL2AntibodyFragment/JackBeanUreaseImmunoconjugateL-DOS47" + "@id": "bts:Infiltratinglobularcarcinoma;NOS" }, { - 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"@id": "bts:Anti-CTLA-4MonoclonalAntibodyADG116" + "@id": "bts:ChronicMyeloidLeukemia;BCR-ABL1-Positive" }, { - "@id": "bts:Anti-CTLA-4MonoclonalAntibodyADU-1604" + "@id": "bts:Head&NeckSquamousCellCarcinoma" }, { - "@id": "bts:Anti-CTLA-4MonoclonalAntibodyAGEN1181" + "@id": "bts:Astrocytoma;NOS;Low-GradeGlioma;SubependymalGiantCellAstrocytoma" }, { - "@id": "bts:Anti-CTLA-4MonoclonalAntibodyBCD-145" + "@id": "bts:Medulloblastoma;SHH-ActivatedAndTP53-Wildtype" }, { - "@id": "bts:Anti-CTLA-4MonoclonalAntibodyHBM4003" + "@id": "bts:Ganglioglioma;NOS;Ependymoma;SupratentorialEpendymoma;NOSOrNEC" }, { - "@id": "bts:Anti-CTLA-4MonoclonalAntibodyMK-1308" + "@id": "bts:IntraductalPapillaryMucinousNeoplasmWithAnAssociatedInvasiveCarcinoma" }, { - "@id": "bts:Anti-CTLA-4MonoclonalAntibodyONC-392" + "@id": "bts:AdrenalCorticalAdenoma;NOS" }, { - "@id": "bts:Anti-CTLA-4MonoclonalAntibodyREGN4659" + "@id": "bts:Adenocarcinoma;PancreatobiliaryType;Pancreatobiliary-TypeCarcinoma" }, { - "@id": "bts:Anti-CTLA-4ProbodyBMS-986288" + "@id": "bts:Lipoblastomatosis" }, { - 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"@id": "bts:Antibody-drugConjugateADCXMT-1536" + "@id": "bts:SalivaryGland" }, { - "@id": "bts:Antibody-drugConjugateAnti-TIM-1-vcMMAECDX-014" + "@id": "bts:Scalp" }, { - "@id": "bts:Antibody-DrugConjugateDFRF4539A" + "@id": "bts:Scapula" }, { - "@id": "bts:Antibody-drugConjugateMEDI7247" + "@id": "bts:Scapula/Clavicle" }, { - "@id": "bts:Antibody-drugConjugatePF-06647263" + "@id": "bts:Schlemm'sCanal" }, { - "@id": "bts:Antibody-drugConjugatePF-06664178" + "@id": "bts:Shoulder" }, { - "@id": "bts:Antibody-drugConjugateSC-002" + "@id": "bts:ShoulderGirdle" }, { - "@id": "bts:Antibody-drugConjugateSC-003" + "@id": "bts:ShoulderJoint" }, { - "@id": "bts:Antibody-drugConjugateSC-004" + "@id": "bts:Skin" }, { - "@id": "bts:Antibody-drugConjugateSC-005" + "@id": "bts:Skull" }, { - "@id": "bts:Antibody-drugConjugateSC-006" + "@id": "bts:SkullandFaceBone" }, { - "@id": "bts:Antibody-drugConjugateSC-007" + "@id": "bts:SmallIntestine" }, { - "@id": "bts:Antibody-likeCD95Receptor/Fc-fusionProteinCAN-008" + "@id": "bts:SoftTissue" }, { - "@id": "bts:Antigen-presentingCells-expressingHPV16E6/E7SQZ-PBMC-HPV" + "@id": "bts:SoftTissue;NOS" }, { - "@id": "bts:AntimetaboliteFF-10502" + "@id": "bts:SphenoidBone" }, { - "@id": "bts:AntineoplasticAgentCombinationSM-88" + "@id": "bts:SpinalCord" }, { - "@id": "bts:AntineoplasticVaccine" + "@id": "bts:Spine" }, { - "@id": "bts:AntineoplasticVaccineGV-1301" + "@id": "bts:Spleen" }, { - "@id": "bts:AntineoplastonA10" + "@id": "bts:SplenicHilarNodes" }, { - "@id": "bts:AntineoplastonAS2-1" + "@id": "bts:Sternum" }, { - "@id": "bts:AntisenseOligonucleotideGTI-2040" + "@id": "bts:Sternum/ChestWall" }, { - "@id": "bts:AntisenseOligonucleotideQR-313" + "@id": "bts:Stomach" }, { - "@id": "bts:AntitumorBKeyActiveComponent-alpha" + "@id": "bts:SuperiorLimbandShoulder" }, { - "@id": "bts:AntrodiacinnamomeaSupplement" + "@id": "bts:SuperiorMaxilla" }, { - "@id": "bts:AntroquinonolCapsule" + "@id": "bts:SupraclavicularNodes" }, { - "@id": "bts:Apalutamide" + "@id": "bts:SuprasellarPituitary" }, { - "@id": "bts:Apatorsen" + "@id": "bts:Talus" }, { - "@id": "bts:Apaziquone" + "@id": "bts:TarsalBone" }, { - "@id": "bts:APC8015F" + "@id": "bts:TemporalBone" }, { - "@id": "bts:APE1/Ref-1RedoxInhibitorAPX3330" + "@id": "bts:TemporalCortex" }, { - "@id": "bts:AphidicolineGlycinate" + "@id": "bts:TemporalLobe" }, { - "@id": "bts:ApilimodDimesylateCapsule" + "@id": "bts:Testis" }, { - "@id": "bts:Apitolisib" + "@id": "bts:Thalamus" }, { - "@id": "bts:Apolizumab" + "@id": "bts:Thigh" }, { - "@id": "bts:Apomab" + "@id": "bts:ThirdVentricle" }, { - "@id": "bts:Apomine" + "@id": "bts:ThoracicSpinalCord" }, { - "@id": "bts:ApoptosisInducerBZL101" + "@id": "bts:ThoracicVertebra" }, { - "@id": "bts:ApoptosisInducerGCS-100" + "@id": "bts:Thorax" }, { - "@id": "bts:ApoptosisInducerMPC-2130" + "@id": "bts:Thymus" }, { - "@id": "bts:Apricoxib" + "@id": "bts:Thyroid" }, { - "@id": "bts:Aprinocarsen" + "@id": "bts:ThyroidandParathyroid" }, { - "@id": "bts:Aprutumab" + "@id": "bts:Tibia" }, { - "@id": "bts:AprutumabIxadotin" + "@id": "bts:Toe" }, { - "@id": "bts:ARAntagonistBMS-641988" + "@id": "bts:Tonsil" }, { - "@id": "bts:ArabinoxylanCompoundMGN3" + "@id": "bts:TrabecularMeshwork" }, { - "@id": "bts:Aranose" + "@id": "bts:Trachea" }, { - "@id": "bts:ARCFusionProteinSL-279252" + "@id": "bts:Trunk" }, { - "@id": "bts:Archexin" + "@id": "bts:Trunk-Paraspinal" }, { - "@id": "bts:Arcitumomab" + "@id": "bts:Ulna" }, { - "@id": "bts:Arfolitixorin" + "@id": "bts:Unknown" }, { - "@id": "bts:ArginaseInhibitorINCB001158" + "@id": "bts:UpperAirway" }, { - "@id": "bts:ArginineButyrate" + "@id": "bts:UpperArm" }, { - "@id": "bts:ArnebiaIndigoJadePearlTopicalCream" + "@id": "bts:UpperExtremity" }, { - "@id": "bts:ArsenicTrioxide" + "@id": "bts:Ureter" }, { - "@id": "bts:ArsenicTrioxideCapsuleFormulationORH2014" + "@id": "bts:Urogenital" }, { - "@id": "bts:ArtemetherSublingualSpray" + "@id": "bts:Uterus" }, { - "@id": "bts:ArtemisininDimer" + "@id": "bts:Vagina" }, { - "@id": "bts:Artesunate" + "@id": "bts:Vasculo-Nervous" }, { - "@id": "bts:ArugulaSeedPowder" + "@id": "bts:Viscera" }, { - "@id": "bts:ArylHydrocarbonReceptorAntagonistBAY2416964" + "@id": "bts:Vulva" }, { - "@id": "bts:ArylHydrocarbonReceptorInhibitorIK-175" + "@id": "bts:Waldeyer'sRing" }, { - "@id": "bts:Asaley" + "@id": "bts:WristJoint" }, { - "@id": "bts:Asciminib" + "@id": "bts:ZygomaticBone" + } + ], + "sms:displayName": "Model Primary Site", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ModelSiteofOrigin", + "@type": "rdfs:Class", + "rdfs:comment": "The text term used to describe the anatomic site of origin associated with the malignant disease model.", + "rdfs:label": "ModelSiteofOrigin", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:AbdominalAorta" }, { - "@id": "bts:Ascrinvacumab" + "@id": "bts:AbdominalEsophagus" }, { - "@id": "bts:AshwagandhaRootPowderExtract" + "@id": "bts:AbdominalMuscle" }, { - "@id": "bts:ASP4132" + "@id": "bts:AbdominalSkin" }, { - "@id": "bts:Aspacytarabine" + "@id": "bts:AbdominalWall" }, { - "@id": "bts:Asparaginase" + "@id": "bts:AbducensNerve" }, { - "@id": "bts:AsparaginaseErwiniachrysanthemi" + "@id": "bts:AccessoryNerve" }, { - "@id": "bts:AstatineAt211Anti-CD38MonoclonalAntibodyOKT10-B10" + "@id": "bts:Acetabulum" }, { - "@id": "bts:AstatineAt211Anti-CD45MonoclonalAntibodyBC8-B10" + "@id": "bts:AcromioclavicularJoint" }, { - "@id": "bts:Astuprotimut-R" + "@id": "bts:AdiposeTissue" }, { - "@id": "bts:Asulacrine" + "@id": "bts:AdrenalCortex" }, { - "@id": "bts:AsulacrineIsethionate" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:Asunercept" + "@id": "bts:AdrenalMedulla" }, { - "@id": "bts:At211MonoclonalAntibody81C6" + "@id": "bts:AmpullaofVater" }, { - "@id": "bts:Atamestane" + "@id": "bts:AnalCanal" }, { - "@id": "bts:Atezolizumab" + "@id": "bts:AnalTransitionalZone" }, { - "@id": "bts:Atiprimod" + "@id": "bts:AnkleJoint" }, { - "@id": "bts:AtiprimodDihydrochloride" + "@id": "bts:AnkleSkin" }, { - "@id": "bts:AtiprimodDimaleate" + "@id": "bts:AntecubitalRegion" }, { - "@id": "bts:ATMInhibitorM3541" + "@id": "bts:AnteriorCranialFossa" }, { - "@id": "bts:ATMKinaseInhibitorAZD0156" + "@id": "bts:AnteriorMediastinum" }, { - "@id": "bts:ATMKinaseInhibitorAZD1390" + "@id": "bts:AnteriorSurfaceoftheEpiglottis" }, { - "@id": "bts:AtorvastatinCalcium" + "@id": "bts:AnteriorWalloftheBladder" }, { - "@id": "bts:AtorvastatinSodium" + "@id": "bts:AnteriorWalloftheNasopharynx" }, { - "@id": "bts:ATRInhibitorRP-3500" + "@id": "bts:AntrumPylori" }, { - "@id": "bts:ATRKinaseInhibitorBAY1895344" + "@id": "bts:Anus" }, { - "@id": "bts:ATRKinaseInhibitorM1774" + "@id": "bts:Aorta" }, { - "@id": "bts:ATRKinaseInhibitorM6620" + "@id": "bts:AortocavalLymphNode" }, { - "@id": "bts:ATRKinaseInhibitorVX-803" + "@id": "bts:ApexoftheTongue" }, { - "@id": "bts:AtrasentanHydrochloride" + "@id": "bts:Aponeurosis" }, { - "@id": "bts:AttenuatedListeriamonocytogenesCRS-100" + "@id": "bts:AppendageoftheUterus" }, { - "@id": "bts:AttenuatedLiveListeriaEncodingHPV16E7VaccineADXS11-001" + "@id": "bts:Appendix" }, { - "@id": "bts:AttenuatedMeaslesVirusEncodingSCDTransgeneTMV-018" + "@id": "bts:Areola" }, { - "@id": "bts:Atuveciclib" + "@id": "bts:ArmSkin" }, { - "@id": "bts:Audencel" + "@id": "bts:Artery" }, { - "@id": "bts:Auranofin" + "@id": "bts:ArticularCartilage" }, { - "@id": "bts:AuroraAKinaseInhibitorLY3295668" + "@id": "bts:AryepiglotticFold" }, { - "@id": "bts:AuroraAKinaseInhibitorLY3295668Erbumine" + "@id": "bts:ArytenoidCartilage" }, { - "@id": "bts:AuroraAKinaseInhibitorMK5108" + "@id": "bts:AscendingColon" }, { - "@id": "bts:AuroraAKinaseInhibitorTAS-119" + "@id": "bts:AutonomicNervousSystem" }, { - "@id": "bts:AuroraAKinase/TyrosineKinaseInhibitorENMD-2076" + "@id": "bts:Axilla" }, { - "@id": "bts:AuroraBSerine/ThreonineKinaseInhibitorTAK-901" + "@id": "bts:AxillaryArtery" }, { - "@id": "bts:AuroraB/CKinaseInhibitorGSK1070916A" + "@id": "bts:AxillaryLymphNode" }, { - "@id": "bts:AurorakinaseA/BinhibitorTT-00420" + "@id": "bts:AxillaryTailoftheBreast" }, { - "@id": "bts:AuroraKinaseInhibitorAMG900" + "@id": "bts:Back" }, { - "@id": "bts:AuroraKinaseInhibitorBI811283" + "@id": "bts:BartholinGland" }, { - "@id": "bts:AuroraKinaseInhibitorMLN8054" + "@id": "bts:BasalGanglia" }, { - "@id": "bts:AuroraKinaseInhibitorPF-03814735" + "@id": "bts:BaseoftheTongue" }, { - "@id": "bts:AuroraKinaseInhibitorSNS-314" + "@id": "bts:Biceps" }, { - "@id": "bts:AuroraKinaseInhibitorTTP607" + "@id": "bts:BicepsFemoris" }, { - "@id": "bts:AuroraKinase/VEGFR2InhibitorCYC116" + "@id": "bts:BileCanaliculus" }, { - "@id": "bts:AutologousACTR-CD16-CD28-expressingT-lymphocytesACTR707" + "@id": "bts:BileDuct" }, { - "@id": "bts:AutologousAFPSpecificTCellReceptorTransducedTCellsC-TCR055" + "@id": "bts:BiliaryTract" }, { - "@id": "bts:AutologousAnti-BCMACART-cellsPHE885" + "@id": "bts:Bladder" }, { - "@id": "bts:AutologousAnti-BCMACAR-transducedT-cellsKITE-585" + "@id": "bts:BladderNeck" }, { - "@id": "bts:AutologousAnti-BCMACD8+CART-cellsDescartes-11" + "@id": "bts:BladderTrigone" }, { - "@id": "bts:AutologousAnti-BCMA-CARExpressingStemMemoryT-cellsP-BCMA-101" + "@id": "bts:Blood" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingCD4+/CD8+T-lymphocytesJCARH125" + "@id": "bts:BloodVessel" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingMemoryT-lymphocytesbb21217" + "@id": "bts:BodyofStomach" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingT-cellsC-CAR088" + "@id": "bts:BodyofthePancreas" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-4-1BB-CD3zeta-expressingT-cellsCT053" + "@id": "bts:BodyofthePenis" }, { - "@id": "bts:AutologousAnti-BCMA-CAR-expressingCD4+/CD8+T-lymphocytesFCARH143" + "@id": "bts:Bone" }, { - "@id": "bts:AutologousAnti-CD123CAR-TCells" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:AutologousAnti-CD19CART-cells19(T2)28z1xx" + "@id": "bts:BoneoftheExtremity" }, { - "@id": "bts:AutologousAnti-CD19CART-cellsIM19" + "@id": "bts:BrachialLymphNode" }, { - "@id": "bts:AutologousAnti-CD19CARTCR-zeta/4-1BB-transducedT-lymphocyteshuCART19" + "@id": "bts:BrachialPlexus" }, { - "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-expressingT-cellsCNCT19" + "@id": "bts:Brachialis" }, { - "@id": "bts:AutologousAnti-CD19CAR-CD28T-cellsET019002" + "@id": "bts:Brain" }, { - "@id": "bts:AutologousAnti-CD19CAR-CD3zeta-4-1BB-expressingT-cellsPZ01" + "@id": "bts:BrainDuraMater" }, { - "@id": "bts:AutologousAnti-CD19CAR-expressingT-lymphocytesCLIC-1901" + "@id": "bts:BrainStem" }, { - "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsAUTO1" + "@id": "bts:BrainVentricle" }, { - "@id": "bts:AutologousAnti-CD19ChimericAntigenReceptorT-cellsSJCAR19" + "@id": "bts:BranchialCleftRemnant" }, { - "@id": "bts:AutologousAnti-CD19T-cellReceptorTcellsET190L1" + "@id": "bts:Breast" }, { - "@id": "bts:AutologousAnti-CD19TAC-TcellsTAC01-CD19" + "@id": "bts:BroadLigament" }, { - "@id": "bts:AutologousAnti-CD19/CD20BispecificNanobody-basedCAR-Tcells" + "@id": "bts:BronchialLymphNode" }, { - "@id": "bts:AutologousAnti-CD19/CD22CART-cellsAUTO3" + "@id": "bts:Bronchiole" }, { - "@id": "bts:AutologousAnti-CD19CAR-4-1BB-CD3zeta-EGFRt-expressingCD4+/CD8+CentralMemoryT-lymphocytesJCAR014" + "@id": "bts:Bronchus" }, { - "@id": "bts:AutologousAnti-CD19CAR-HER2t/CD22CAR-EGFRt-expressingT-cells" + "@id": "bts:BuccalMucosa" }, { - "@id": "bts:AutologousAnti-CD20CARTransducedCD4/CD8EnrichedT-cellsMB-CART20.1" + "@id": "bts:Buttock" }, { - "@id": "bts:AutologousAnti-CD22CAR-4-1BB-TCRz-transducedT-lymphocytesCART22-65s" + "@id": "bts:C1Vertebra" }, { - "@id": "bts:AutologousAnti-EGFRCAR-transducedCXCR5-modifiedT-lymphocytes" + "@id": "bts:C2Vertebra" }, { - "@id": "bts:AutologousAnti-FLT3CARTCellsAMG553" + "@id": "bts:Calcaneum" }, { - "@id": "bts:AutologousAnti-HLA-A*02/AFPTCRm-expressingT-cellsET140202" + "@id": "bts:Calf" }, { - "@id": "bts:AutologousAnti-HLA-A*0201/AFPCART-cellsET1402L1" + "@id": "bts:CardiacAtrium" }, { - "@id": "bts:AutologousAnti-ICAM-1-CAR-CD28-4-1BB-CD3zeta-expressingT-cellsAIC100" + "@id": "bts:CardiacVentricle" }, { - "@id": "bts:AutologousAnti-kappaLightChainCAR-CD28-expressingT-lymphocytes" + "@id": "bts:Carina" }, { - "@id": "bts:AutologousAnti-NY-ESO-1/LAGE-1TCR-transducedc259TLymphocytesGSK3377794" + "@id": "bts:CarotidArtery" }, { - "@id": "bts:AutologousAnti-PD-1Antibody-activatedTumor-infiltratingLymphocytes" + "@id": "bts:CarotidBody" }, { - "@id": "bts:AutologousAnti-PSMACAR-TCellsP-PSMA-101" + "@id": "bts:CarpalBone" }, { - "@id": "bts:AutologousAXL-targetedCART-cellsCCT301-38" + "@id": "bts:CarpalRegion" }, { - "@id": "bts:AutologousB-cell/Monocyte-presentingHER2/neuAntigenVaccineBVAC-B" + "@id": "bts:Cartilage" }, { - "@id": "bts:AutologousBCMA-targetedCARTCellsCC-98633" + "@id": "bts:CaudaEquina" }, { - "@id": "bts:AutologousBCMA-targetedCARTCellsLCAR-B4822M" + "@id": "bts:Cecum" }, { - "@id": "bts:AutologousBi-epitopeBCMA-targetedCART-cellsJNJ-68284528" + "@id": "bts:CeliacArtery" }, { - "@id": "bts:AutologousBispecificBCMA/CD19-targetedCAR-TCellsGC012F" + "@id": "bts:CeliacLymphNode" }, { - "@id": "bts:AutologousBispecificCD19/CD22-targetedCAR-TCellsGC022" + "@id": "bts:CentralNervousSystem" }, { - "@id": "bts:AutologousBoneMarrow-derivedCD34/CXCR4-positiveStemCellsAMR-001" + "@id": "bts:CentralPortionoftheBreast" }, { - "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3005" + "@id": "bts:CerebellopontineAngle" }, { - "@id": "bts:AutologousCAR-mbIL15-SafetySwitchT-cellsPRGN-3006" + "@id": "bts:Cerebellum" }, { - "@id": "bts:AutologousCD123-4SCAR-expressingT-cells4SCAR123" + "@id": "bts:CerebralCortex" }, { - "@id": "bts:AutologousCD19CAR-expressingCD4+/CD8+T-cellsMB-CART19.1" + "@id": "bts:CerebralHemisphere" }, { - "@id": "bts:AutologousCD19-targetedCARTCellsCC-97540" + "@id": "bts:CerebralMeninges" }, { - "@id": "bts:AutologousCD19-targetedCARTCellsJWCAR029" + "@id": "bts:CerebralPeduncle" }, { - "@id": "bts:AutologousCD19-targetedCAR-TCellsGC007F" + "@id": "bts:CerebralWhiteMatter" }, { - "@id": "bts:AutologousCD19/PD-1BispecificCAR-TCells" + "@id": "bts:CeruminousGland" }, { - "@id": "bts:AutologousCD20-4SCAR-expressingT-cells4SCAR20" + "@id": "bts:CervicalEsophagus" }, { - "@id": "bts:AutologousCD22-4SCAR-expressingT-cells4SCAR22" + "@id": "bts:CervicalGland" }, { - "@id": "bts:AutologousCD38-4SCAR-expressingT-cells4SCAR38" + "@id": "bts:CervicalLymphNode" }, { - "@id": "bts:AutologousClonalNeoantigenTCellsATL001" + "@id": "bts:CervixUteri" }, { - "@id": "bts:AutologousCRISPR-editedAnti-CD19CARTCellsXYF19" + "@id": "bts:Cheek" }, { - "@id": "bts:AutologousDeepIL-15PrimedT-cellsTRQ15-01" + "@id": "bts:Chest" }, { - "@id": "bts:AutologousDendriticCellVaccineACT2001" + "@id": "bts:ChestWall" }, { - "@id": "bts:AutologousDendriticCell-basedImmunotherapeuticAV0113" + "@id": "bts:Choroid" }, { - "@id": "bts:AutologousFRa-4SCAR-expressingT-cells4SCAR-FRa" + "@id": "bts:ChoroidPlexus" }, { - "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032CD8alphaTCells" + "@id": "bts:ChoroidPlexusoftheFourthVentricle" }, { - "@id": "bts:AutologousGenetically-modifiedMAGE-A4C1032TCells" + "@id": "bts:ChoroidPlexusoftheLateralVentricle" }, { - "@id": "bts:AutologousHeat-ShockProtein70PeptideVaccineAG-858" + "@id": "bts:ChoroidPlexusoftheThirdVentricle" }, { - "@id": "bts:AutologousHPV16E7-specificHLA-A*02:01-restrictedTCRGeneEngineeredLymphocytesKITE-439" + "@id": "bts:CiliaryBody" }, { - "@id": "bts:AutologousLMP1/LMP2/EBNA1-specificHLA-A02:01/24:02/11:01-restrictedTCR-expressingT-lymphocytesYT-E001" + "@id": "bts:Clitoris" }, { - "@id": "bts:AutologousMAGE-A3/A6-specificTCRGene-engineeredLymphocytesKITE-718" + "@id": "bts:Coccyx" }, { - "@id": "bts:AutologousMCPyV-specificHLA-A02-restrictedTCR-transducedCD4+andCD8+T-cellsFH-MCVA2TCR" + "@id": "bts:CochlearNerve" }, { - "@id": "bts:AutologousMesenchymalStemCellsApceth101" + "@id": "bts:Colon" }, { - "@id": "bts:AutologousMesothelin-specificHumanmRNACAR-transfectedPBMCsMCY-M11" + "@id": "bts:CommissureoftheLip" }, { - "@id": "bts:AutologousMonocyte-derivedLysate-pulsedDendriticCellVaccinePV-001-DC" + "@id": "bts:CommonBileDuct" }, { - "@id": "bts:AutologousMulti-lineagePotentialCells" + "@id": "bts:Concha" }, { - "@id": "bts:AutologousNectin-4/FAP-targetedCAR-TCells" + "@id": "bts:Conjunctiva" }, { - "@id": "bts:AutologousNKG2DCART-cellsCYAD-02" + "@id": "bts:ConnectiveTissue" }, { - "@id": "bts:AutologousNKG2DCAR-CD3zeta-DAP10-expressingT-LymphocytesCYAD-01" + "@id": "bts:ConusMedullaris" }, { - "@id": "bts:AutologousPancreaticAdenocarcinomaLysateandmRNA-loadedDendriticCellVaccine" + "@id": "bts:Coracobrachialis" }, { - "@id": "bts:AutologousPeripheralBloodLymphocytesfromIbrutinib-treatedChronicLymphocyticLeukemiaPatientsIOV-2001" + "@id": "bts:Cornea" }, { - "@id": "bts:AutologousProstateCancerAntigen-expressingDendriticCellVaccineBPX-101" + "@id": "bts:CorneoscleralLimbus" }, { - "@id": "bts:AutologousProstateStemCellAntigen-specificCARTCellsBPX-601" + "@id": "bts:CorpusCallosum" }, { - "@id": "bts:AutologousRapamycin-resistantTh1/Tc1CellsRAPA-201" + "@id": "bts:CorpusStriatum" }, { - "@id": "bts:AutologousROR2-targetedCART-cellsCCT301-59" + "@id": "bts:CorpusUteri" }, { - "@id": "bts:AutologousTAAs-loadedAutologousDendriticCellsAV-GBM-1" + "@id": "bts:CostalCartilage" }, { - "@id": "bts:AutologousTCR-engineeredT-cellsIMA201" + "@id": "bts:CostovertebralJoint" }, { - "@id": "bts:AutologousTCR-engineeredT-cellsIMA202" + "@id": "bts:CowperGland" }, { - "@id": "bts:AutologousTCR-engineeredT-cellsIMA203" + "@id": "bts:CranialNerve" }, { - "@id": "bts:AutologousTCRm-expressingT-cellsET140203" + "@id": "bts:CraniopharyngealDuct" }, { - "@id": "bts:AutologousTetravalentDendriticCellVaccineMIDRIX4-LUNG" + "@id": "bts:CricoidCartilage" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-144" + "@id": "bts:Cul-de-sac" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-145" + "@id": "bts:CuneiformCartilage" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesLN-145-S1" + "@id": "bts:CysticDuct" }, { - "@id": "bts:AutologousTumorInfiltratingLymphocytesMDA-TIL" + "@id": "bts:DescendingColon" }, { - "@id": "bts:AutologousUniversalCAR-expressingT-lymphocytesUniCAR02-T" + "@id": "bts:Diaphragm" }, { - "@id": "bts:Avadomide" + "@id": "bts:DiaphragmaticLymphNode" }, { - "@id": "bts:AvadomideHydrochloride" + "@id": "bts:DomeoftheBladder" }, { - "@id": "bts:Avapritinib" + "@id": "bts:DuctofGartner" }, { - "@id": "bts:Avdoralimab" + "@id": "bts:DuctusSantorini" }, { - "@id": "bts:Avelumab" + "@id": "bts:Duodenum" }, { - "@id": "bts:Aviscumine" + "@id": "bts:DuraMater" }, { - "@id": "bts:AvitinibMaleate" + "@id": "bts:Ear" }, { - "@id": "bts:AxalimogeneFilolisbac" + "@id": "bts:EarSkin" }, { - "@id": "bts:Axatilimab" + "@id": "bts:Ectocervix" }, { - "@id": "bts:AxicabtageneCiloleucel" + "@id": "bts:ElbowJoint" }, { - "@id": "bts:Axitinib" + "@id": "bts:ElbowSkin" }, { - "@id": "bts:AXLInhibitorDS-1205c" + "@id": "bts:Endocardium" }, { - "@id": "bts:AXLInhibitorSLC-391" + "@id": "bts:Endocervix" }, { - "@id": "bts:AXLReceptorTyrosineKinase/cMETInhibitorBPI-9016M" + "@id": "bts:EndocrineGland" }, { - "@id": "bts:AXL/FLT3/VEGFR2InhibitorKC1036" + "@id": "bts:EndometrialStroma" }, { - "@id": "bts:Axl/MerInhibitorINCB081776" + "@id": "bts:Endometrium" }, { - "@id": "bts:Axl/MerInhibitorPF-07265807" + "@id": "bts:Ependyma" }, { - "@id": "bts:Azacitidine" + "@id": "bts:Epicardium" }, { - "@id": "bts:Azapicyl" + "@id": "bts:Epididymis" }, { - "@id": "bts:Azaribine" + "@id": "bts:EpiduralSpinalCanalSpace" }, { - "@id": "bts:Azaserine" + "@id": "bts:Epiglottis" }, { - "@id": "bts:Azathioprine" + "@id": "bts:EpitrochlearLymphNode" }, { - "@id": "bts:Azimexon" + "@id": "bts:Esophagus" }, { - "@id": "bts:AzintuxizumabVedotin" + "@id": "bts:EthmoidBone" }, { - "@id": "bts:AziridinylbenzoquinoneRH1" + "@id": "bts:EthmoidSinus" }, { - "@id": "bts:Azotomycin" + "@id": "bts:EustachianTube" }, { - "@id": "bts:Azurin:50-77CellPenetratingPeptidep28" + "@id": "bts:ExternalAcousticMeatus" }, { - "@id": "bts:B-Raf/VEGFR-2InhibitorRAF265" + "@id": "bts:ExternalEar" }, { - "@id": "bts:BabaodanCapsule" + "@id": "bts:ExternalLip" }, { - "@id": "bts:BacillusCalmette-GuerinSubstrainConnaughtLiveAntigen" + "@id": "bts:ExternalLowerLip" }, { - "@id": "bts:Bactobolin" + "@id": "bts:ExternalNose" }, { - "@id": "bts:Bafetinib" + "@id": "bts:ExternalUpperLip" }, { - "@id": "bts:Balixafortide" + "@id": "bts:ExtrahepaticBileDuct" }, { - "@id": "bts:Balstilimab" + "@id": "bts:Eye" }, { - "@id": "bts:Baltaleucel-T" + "@id": "bts:Eyebrow" }, { - "@id": "bts:Banoxantrone" + "@id": "bts:Eyelid" }, { - "@id": "bts:Barasertib" + "@id": "bts:FacialBone" }, { - "@id": "bts:Bardoxolone" + "@id": "bts:FacialNerve" }, { - "@id": "bts:BardoxoloneMethyl" + "@id": "bts:FallopianTube" }, { - "@id": "bts:Baricitinib" + "@id": "bts:FalseVocalCord" }, { - "@id": "bts:Batabulin" + "@id": "bts:FalxCerebelli" }, { - "@id": "bts:BatabulinSodium" + "@id": "bts:FalxCerebri" }, { - "@id": "bts:Batimastat" + "@id": "bts:Fascia" }, { - "@id": "bts:Bavituximab" + "@id": "bts:FemaleGenitalia" }, { - "@id": "bts:Bazedoxifene" + "@id": "bts:FemoralArtery" }, { - "@id": "bts:Bazlitoran" + "@id": "bts:FemoralLymphNode" }, { - "@id": "bts:BC-819Plasmid/PolyethylenimineComplex" + "@id": "bts:FemoralNerve" }, { - "@id": "bts:BCGSolution" + "@id": "bts:Femur" }, { - "@id": "bts:BCGTokyo-172StrainSolution" + "@id": "bts:FibrousTissue" }, { - "@id": "bts:BCGVaccine" + "@id": "bts:Fibula" }, { - "@id": "bts:Bcl-2InhibitorAPG2575" + "@id": "bts:Finger" }, { - "@id": "bts:Bcl-2InhibitorBCL201" + "@id": "bts:Fingernail" }, { - "@id": "bts:Bcl-2InhibitorBGB-11417" + "@id": "bts:Flank" }, { - "@id": "bts:Bcl-2InhibitorLP-108" + "@id": "bts:FloorofMouth" }, { - "@id": "bts:Bcl-2InhibitorS65487" + "@id": "bts:Foot" }, { - "@id": "bts:Bcl-XsAdenovirusVaccine" + "@id": "bts:FootBone" }, { - "@id": "bts:BCMAxCD3T-cellEngagingAntibodyCC-93269" + "@id": "bts:FootPhalanx" }, { - "@id": "bts:BCMA-CD19CompoundCARTCells" + "@id": "bts:FootSkin" }, { - "@id": "bts:BCMA/CD3eTri-specificT-cellActivatingConstructHPN217" + "@id": "bts:Forearm" }, { - "@id": "bts:Bcr-AblKinaseInhibitorK0706" + "@id": "bts:Forehead" }, { - "@id": "bts:Bcr-AblKinaseInhibitorPF-114" + "@id": "bts:FourthVentricle" }, { - "@id": "bts:BCR-ABL/KIT/AKT/ERKInhibitorHQP1351" + "@id": "bts:FrontalBone" }, { - "@id": "bts:Beauvericin" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:Becatecarin" + "@id": "bts:FrontalPole" }, { - "@id": "bts:Belagenpumatucel-L" + "@id": "bts:FrontalSinus" }, { - "@id": "bts:BelantamabMafodotin" + "@id": "bts:FundusoftheStomach" }, { - "@id": "bts:Belapectin" + "@id": "bts:FundusUteri" }, { - "@id": "bts:Belimumab" + "@id": "bts:Gallbladder" }, { - "@id": "bts:Belinostat" + "@id": "bts:GastricCardia" }, { - "@id": "bts:BelotecanHydrochloride" + "@id": "bts:GastricLymphNode" }, { - "@id": "bts:Belvarafenib" + "@id": "bts:GastrocnemiusMuscle" }, { - "@id": "bts:Belzutifan" + "@id": "bts:GastroesophagealJunction" }, { - "@id": "bts:Bemarituzumab" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:Bemcentinib" + "@id": "bts:Gingiva" }, { - "@id": "bts:Bempegaldesleukin" + "@id": "bts:GlandofLittre" }, { - "@id": "bts:Benaxibine" + "@id": "bts:GlansPenis" }, { - "@id": "bts:Bendamustine" + "@id": "bts:GlobusPallidus" }, { - "@id": "bts:BendamustineHydrochloride" + "@id": "bts:GlossopharyngealNerve" }, { - "@id": "bts:Bendamustine-containingNanoparticle-basedFormulationRXDX-107" + "@id": "bts:Glottis" }, { - "@id": "bts:BenzaldehydeDimethaneSulfonate" + "@id": "bts:GluteusMaximus" }, { - "@id": "bts:Benzoylphenylurea" + "@id": "bts:GreaterCurvatureoftheStomach" }, { - "@id": "bts:BerberineChloride" + "@id": "bts:Hand" }, { - "@id": "bts:Bermekimab" + "@id": "bts:HandDigit1" }, { - "@id": "bts:Bersanlimab" + "@id": "bts:HandPhalanx" }, { - "@id": "bts:BerubicinHydrochloride" + "@id": "bts:HandSkin" }, { - "@id": "bts:Berzosertib" + "@id": "bts:HardPalate" }, { - "@id": "bts:BETBromodomainInhibitorZEN-3694" + "@id": "bts:HeadandNeckLymphNode" }, { - "@id": "bts:BETInhibitorABBV-744" + "@id": "bts:HeadofthePancreas" }, { - "@id": "bts:BETInhibitorBAY1238097" + "@id": "bts:HeadSkin" }, { - "@id": "bts:BETinhibitorBI894999" + "@id": "bts:Heart" }, { - "@id": "bts:BETInhibitorBMS-986158" + "@id": "bts:Helix" }, { - "@id": "bts:BETInhibitorCC-90010" + "@id": "bts:HematopoieticSystem" }, { - "@id": "bts:BETInhibitorCPI-0610" + "@id": "bts:Hepatic" }, { - "@id": "bts:BETInhibitorFT-1101" + "@id": "bts:HepaticDuct" }, { - "@id": "bts:BETInhibitorGS-5829" + "@id": "bts:HepaticFlexure" }, { - "@id": "bts:BETInhibitorGSK2820151" + "@id": "bts:HepaticLymphNode" }, { - "@id": "bts:BETInhibitorINCB054329" + "@id": "bts:Hip" }, { - "@id": "bts:BETInhibitorINCB057643" + "@id": "bts:HipJoint" }, { - "@id": "bts:BETInhibitorRO6870810" + "@id": "bts:Hippocampus" }, { - "@id": "bts:BET-bromodomainInhibitorODM-207" + "@id": "bts:Humerus" }, { - "@id": "bts:BetaAlethine" + "@id": "bts:Hymen" }, { - "@id": "bts:Beta-Carotene" + "@id": "bts:HyoidBone" }, { - "@id": "bts:Beta-elemene" + "@id": "bts:HypoglossalNerve" }, { - "@id": "bts:Beta-Glucan" + "@id": "bts:Hypopharynx" }, { - "@id": "bts:Beta-GlucanMM-10-001" + "@id": "bts:Hypothalamus" }, { - "@id": "bts:Beta-lapachoneProdrugARQ761" + "@id": "bts:IleocecalValve" }, { - "@id": "bts:Beta-ThioguanineDeoxyriboside" + "@id": "bts:Ileum" }, { - "@id": "bts:BetaglucinGel" + "@id": "bts:IliacArtery" }, { - "@id": "bts:BetulinicAcid" + "@id": "bts:IliacLymphNode" }, { - "@id": "bts:Bevacizumab" + "@id": "bts:IliacVein" }, { - "@id": "bts:Bexarotene" + "@id": "bts:IliopsoasMuscle" }, { - "@id": "bts:Bexmarilimab" + "@id": "bts:Ilium" }, { - "@id": "bts:BF-200GelFormulation" + "@id": "bts:InferiorVenaCava" }, { - "@id": "bts:BH3MimeticABT-737" + "@id": "bts:InfraclavicularLymphNode" }, { - "@id": "bts:Bi-functionalAlkylatingAgentVAL-083" + "@id": "bts:InfraclavicularRegion" }, { - "@id": "bts:Bicalutamide" + "@id": "bts:InfratentorialBrain" }, { - "@id": "bts:Bimiralisib" + "@id": "bts:InguinalLymphNode" }, { - "@id": "bts:Binetrakin" + "@id": "bts:InguinalRegion" }, { - "@id": "bts:Binimetinib" + "@id": "bts:InnerCanthus" }, { - "@id": "bts:BintrafuspAlfa" + "@id": "bts:InnerEar" }, { - "@id": "bts:Birabresib" + "@id": "bts:IntercostalLymphNode" }, { - "@id": "bts:Birinapant" + "@id": "bts:IntercostalMuscle" }, { - "@id": "bts:Bis(choline)tetrathiomolybdate" + "@id": "bts:IntercostalNerve" }, { - "@id": "bts:Bisantrene" + "@id": "bts:InternalCapsule" }, { - "@id": "bts:BisantreneHydrochloride" + "@id": "bts:InternalIliacLymphNode" }, { - "@id": "bts:Bisnafide" + "@id": "bts:InternalMammaryArtery" }, { - "@id": "bts:BisnafideDimesylate" + "@id": "bts:InternalMammaryLymphNode" }, { - "@id": "bts:BispecificAntibody2B1" + "@id": "bts:InternalNare" }, { - "@id": "bts:BispecificAntibodyAGEN1223" + "@id": "bts:IntervertebralDisc" }, { - "@id": "bts:BispecificAntibodyAMG509" + "@id": "bts:Intestine" }, { - "@id": "bts:BispecificAntibodyGS-1423" + "@id": "bts:Intra-AbdominalLymphNode" }, { - "@id": "bts:BispecificAntibodyMDX-H210" + "@id": "bts:IntrahepaticBileDuct" }, { - "@id": "bts:BispecificAntibodyMDX447" + "@id": "bts:IntraocularRouteofAdministration" }, { - "@id": "bts:Bisthianostat" + "@id": "bts:IntrathoracicLymphNode" }, { - "@id": "bts:BiTEAntibodyAMG910" + "@id": "bts:Iris" }, { - "@id": "bts:BivalentBRD4InhibitorAZD5153" + "@id": "bts:IschiorectalFossa" }, { - "@id": "bts:BizalimogeneRalaplasmid" + "@id": "bts:Ischium" }, { - "@id": "bts:Bizelesin" + "@id": "bts:IsletofLangerhans" }, { - "@id": "bts:BL22Immunotoxin" + "@id": "bts:IsthmusUteri" }, { - "@id": "bts:BlackCohosh" + "@id": "bts:JawBone" }, { - "@id": "bts:BlackRaspberryNectar" + "@id": "bts:JawJoint" }, { - "@id": "bts:Bleomycin" + "@id": "bts:Jejunum" }, { - "@id": "bts:BleomycinA2" + "@id": "bts:Joint" }, { - "@id": "bts:BleomycinB2" + "@id": "bts:Kidney" }, { - "@id": "bts:BleomycinSulfate" + "@id": "bts:KneeJoint" }, { - "@id": "bts:Blinatumomab" + "@id": "bts:KneeSkin" }, { - "@id": "bts:BlueberryPowderSupplement" + "@id": "bts:Labium" }, { - "@id": "bts:BMI1InhibitorPTC596" + "@id": "bts:LabiumMajus" }, { - "@id": "bts:BMS-184476" + "@id": "bts:LabiumMinus" }, { - "@id": "bts:BMS-188797" + "@id": "bts:LacrimalGland" }, { - "@id": "bts:BMS-214662" + "@id": "bts:LacrimalSac" }, { - "@id": "bts:BMS-275183" + "@id": "bts:LargeIntestine" }, { - "@id": "bts:BoanmycinHydrochloride" + "@id": "bts:LaryngealCartilage" }, { - "@id": "bts:Bomedemstat" + "@id": "bts:Larynx" }, { - "@id": "bts:Boronophenylalanine-FructoseComplex" + "@id": "bts:LateralVentricle" }, { - "@id": "bts:Bortezomib" + "@id": "bts:LateralWalloftheBladder" }, { - "@id": "bts:Bosutinib" + "@id": "bts:LateralWalloftheNasopharynx" }, { - "@id": "bts:BosutinibMonohydrate" + "@id": "bts:LateralWalloftheOropharynx" }, { - "@id": "bts:BotanicalAgentBEL-X-HG" + "@id": "bts:LateralWallofthePharynx" }, { - "@id": "bts:BotanicalAgentLEAC-102" + "@id": "bts:LegSkin" }, { - "@id": "bts:BovineCartilage" + "@id": "bts:Lens" }, { - "@id": "bts:Bozitinib" + "@id": "bts:LesserCurvatureoftheStomach" }, { - "@id": "bts:BP-Cx1-PlatinumComplexBP-C1" + "@id": "bts:Ligament" }, { - "@id": "bts:BR96-DoxorubicinImmunoconjugate" + "@id": "bts:LingualTonsil" }, { - "@id": "bts:Brachyury-expressingYeastVaccineGI-6301" + "@id": "bts:LingulaoftheLung" }, { - "@id": "bts:BRAFInhibitor" + "@id": "bts:Lip" }, { - "@id": "bts:BRAFInhibitorARQ736" + "@id": "bts:Liver" }, { - "@id": "bts:BRAFInhibitorBGB-3245" + "@id": "bts:LobuleoftheAuricle" }, { - "@id": "bts:BRAFInhibitorPLX8394" + "@id": "bts:LowerExtremity" }, { - "@id": "bts:BRAF(V600E)KinaseInhibitorABM-1310" + "@id": "bts:LowerGingiva" }, { - "@id": "bts:BRAF(V600E)KinaseInhibitorRO5212054" + "@id": "bts:LowerLobeoftheLung" }, { - "@id": "bts:BRAF/EGFRInhibitorBGB-283" + "@id": "bts:LowerThirdoftheEsophagus" }, { - "@id": "bts:BRAFV600/PI3KInhibitorASN003" + "@id": "bts:Lower-InnerQuadrantoftheBreast" }, { - "@id": "bts:BRD4InhibitorPLX2853" + "@id": "bts:Lower-OuterQuadrantoftheBreast" }, { - "@id": "bts:BRD4InhibitorPLX51107" + "@id": "bts:LumbarNerve" }, { - "@id": "bts:Breflate" + "@id": "bts:LumbosacralPlexus" }, { - "@id": "bts:Brentuximab" + "@id": "bts:Lung" }, { - "@id": "bts:BrentuximabVedotin" + "@id": "bts:LymphNode" }, { - "@id": "bts:Brequinar" + "@id": "bts:LymphNodeofInguinalRegionorLeg" }, { - "@id": "bts:BrequinarSodium" + "@id": "bts:Lymphatic" }, { - "@id": "bts:BriciclibSodium" + "@id": "bts:MainBronchus" }, { - "@id": "bts:Brigatinib" + "@id": "bts:MaleGenitalia" }, { - "@id": "bts:Brilanestrant" + "@id": "bts:MalePrepuce" }, { - "@id": "bts:BrimonidineTartrateNanoemulsionOCU-300" + "@id": "bts:MammaryGland" }, { - "@id": "bts:Brivanib" + "@id": "bts:Mandible" }, { - "@id": "bts:BrivanibAlaninate" + "@id": "bts:MasseterMuscle" }, { - "@id": "bts:Brivudine" + "@id": "bts:Maxilla" }, { - "@id": "bts:BrivudinePhosphoramidate" + "@id": "bts:MaxillarySinus" }, { - "@id": "bts:Broad-SpectrumHumanPapillomavirusVaccineV505" + "@id": "bts:MeckelDiverticulum" }, { - "@id": "bts:BroccoliSprout/BroccoliSeedExtractSupplement" + "@id": "bts:MedianNerve" }, { - "@id": "bts:Bromacrylide" + "@id": "bts:MediastinalLymphNode" }, { - "@id": "bts:BromebricAcid" + "@id": "bts:Mediastinum" }, { - "@id": "bts:BromocriptineMesylate" + "@id": "bts:MedullaOblongata" }, { - "@id": "bts:Brontictuzumab" + "@id": "bts:MeibomianGland" }, { - "@id": "bts:BrostacillinHydrochloride" + "@id": "bts:Meninges" }, { - "@id": "bts:Brostallicin" + "@id": "bts:MeniscusLateralis" }, { - "@id": "bts:Broxuridine" + "@id": "bts:MeniscusMedialis" }, { - "@id": "bts:BruceanolA" + "@id": "bts:Mentum" }, { - "@id": "bts:BruceanolB" + "@id": "bts:Mesencephalon" }, { - "@id": "bts:BruceanolC" + "@id": "bts:MesentericArtery" }, { - "@id": "bts:BruceanolD" + "@id": "bts:MesentericLymphNode" }, { - "@id": "bts:BruceanolE" + "@id": "bts:Mesentery" }, { - "@id": "bts:BruceanolF" + "@id": "bts:MesonephricDuct" }, { - "@id": "bts:BruceanolG" + "@id": "bts:Mesonephros" }, { - "@id": "bts:BruceanolH" + "@id": "bts:Mesovarium" }, { - "@id": "bts:Bruceantin" + "@id": "bts:MetacarpalBone" }, { - "@id": "bts:Bryostatin1" + "@id": "bts:MetatarsalBone" }, { - "@id": "bts:BTKInhibitorARQ531" + "@id": "bts:MiddleCranialFossa" }, { - "@id": "bts:BTKInhibitorCT-1530" + "@id": "bts:MiddleEar" }, { - "@id": "bts:BTKInhibitorDTRMWXHS-12" + "@id": "bts:MiddleLobeoftheRightLung" }, { - "@id": "bts:BTKInhibitorHZ-A-018" + "@id": "bts:MiddleThirdoftheEsophagus" }, { - "@id": "bts:BTKInhibitorICP-022" + "@id": "bts:MinorSalivaryGland" }, { - "@id": "bts:BTKInhibitorLOXO-305" + "@id": "bts:MonsPubis" }, { - "@id": "bts:BTKInhibitorM7583" + "@id": "bts:MucosaoftheLip" }, { - "@id": "bts:BTKinhibitorTG-1701" + "@id": "bts:MucosaoftheLowerLip" }, { - "@id": "bts:Budigalimab" + "@id": "bts:MucosaoftheUpperLip" }, { - "@id": "bts:Budotitane" + "@id": "bts:Muscle" }, { - "@id": "bts:Bufalin" + "@id": "bts:MusculusLatissimusDorsi" }, { - "@id": "bts:Buparlisib" + "@id": "bts:Myocardium" }, { - "@id": "bts:Burixafor" + "@id": "bts:Myometrium" }, { - "@id": "bts:BurixaforHydrobromide" + "@id": "bts:NasalBone" }, { - "@id": "bts:Burosumab" + "@id": "bts:NasalCartilage" }, { - "@id": "bts:Buserelin" + "@id": "bts:NasalCavity" }, { - "@id": "bts:BushenCuluanDecoction" + "@id": "bts:NasalSeptum" }, { - "@id": "bts:Bushen-JianpiDecoction" + "@id": "bts:NasalTurbinate" }, { - "@id": "bts:Busulfan" + "@id": "bts:NasolacrimalDuct" }, { - "@id": "bts:ButhionineSulfoximine" + "@id": "bts:Nasopharynx" }, { - "@id": "bts:BXQ-350NanovesicleFormulation" + "@id": "bts:NeckSkin" }, { - "@id": "bts:C-KitInhibitorPLX9486" + "@id": "bts:Nerve" }, { - "@id": "bts:C-MetInhibitorABN401" + "@id": "bts:NervousSystem" }, { - "@id": "bts:C-MetInhibitorAL2846" + "@id": "bts:Nipple" }, { - "@id": "bts:C-MetInhibitorAMG208" + "@id": "bts:Nose" }, { - "@id": "bts:C-MetInhibitorAMG337" + "@id": "bts:Nostril" }, { - "@id": "bts:C-MetInhibitorGST-HG161" + "@id": "bts:ObturatorLymphNode" }, { - "@id": "bts:C-MetInhibitorHS-10241" + "@id": "bts:ObturatorNerve" }, { - "@id": "bts:C-MetInhibitorJNJ-38877605" + "@id": "bts:OccipitalBone" }, { - "@id": "bts:C-MetInhibitorMK2461" + "@id": "bts:OccipitalLobe" }, { - "@id": "bts:C-MetInhibitorMK8033" + "@id": "bts:OccipitalLymphNode" }, { - "@id": "bts:C-MetInhibitorMSC2156119J" + "@id": "bts:OculomotorMuscle" }, { - "@id": "bts:C-mybAntisenseOligonucleotideG4460" + "@id": "bts:OculomotorNerve" }, { - "@id": "bts:C-rafAntisenseOligonucleotideISIS5132" + "@id": "bts:OlfactoryNerve" }, { - "@id": "bts:C-VISABikDD:Liposome" + "@id": "bts:Omentum" }, { - "@id": "bts:C/EBPBetaAntagonistST101" + "@id": "bts:OpticChiasm" }, { - "@id": "bts:CAB-ROR2-ADCBA3021" + "@id": "bts:OpticNerve" }, { - "@id": "bts:Cabazitaxel" + "@id": "bts:OpticTract" }, { - "@id": "bts:Cabiralizumab" + "@id": "bts:OralCavity" }, { - "@id": "bts:Cabozantinib" + "@id": "bts:Orbit" }, { - "@id": "bts:CabozantinibS-malate" + "@id": "bts:Oropharynx" }, { - "@id": "bts:Cactinomycin" + "@id": "bts:OtherSpecifiedPartsofPancreas" }, { - "@id": "bts:CaffeicAcidPhenethylEster" + "@id": "bts:OuterCanthus" }, { - "@id": "bts:CAIXInhibitorDTP348" + "@id": "bts:Ovary" }, { - "@id": "bts:CAIXInhibitorSLC-0111" + "@id": "bts:Palate" }, { - "@id": "bts:CalaspargasePegol-mknl" + "@id": "bts:PalatineTonsil" }, { - "@id": "bts:Calcitriol" + "@id": "bts:PalmarFascia" }, { - "@id": "bts:CalciumRelease-activatedChannelInhibitorCM4620" + "@id": "bts:Pancreas" }, { - "@id": "bts:CalciumRelease-activatedChannelsInhibitorRP4010" + "@id": "bts:PancreaticDuct" }, { - "@id": "bts:CalciumSaccharate" + "@id": "bts:PancreaticLymphNode" }, { - "@id": "bts:Calculusbovis/Moschus/Olibanum/MyrrhaCapsule" + "@id": "bts:ParaaorticLymphNode" }, { - "@id": "bts:CalicheamicinGamma1I" + "@id": "bts:Paraganglion" }, { - "@id": "bts:CamidanlumabTesirine" + "@id": "bts:Parametrium" }, { - "@id": "bts:Camptothecin" + "@id": "bts:ParanasalSinus" }, { - "@id": "bts:CamptothecinAnalogueTLC388" + "@id": "bts:ParasympatheticNervousSystem" }, { - "@id": "bts:CamptothecinGlycoconjugateBAY38-3441" + "@id": "bts:ParathyroidGland" }, { - "@id": "bts:CamptothecinSodium" + "@id": "bts:ParatrachealLymphNode" }, { - "@id": "bts:Camptothecin-20(S)-O-PropionateHydrate" + "@id": "bts:ParietalBone" }, { - "@id": "bts:Camrelizumab" + "@id": "bts:ParietalLobe" }, { - "@id": "bts:Camsirubicin" + "@id": "bts:ParietalPleura" }, { - "@id": "bts:Cancell" + "@id": "bts:ParotidDuct" }, { - "@id": "bts:CancerPeptideVaccineS-588410" + "@id": "bts:ParotidGland" }, { - "@id": "bts:Canerpaturev" + "@id": "bts:ParotidGlandLymphNode" }, { - "@id": "bts:CanertinibDihydrochloride" + "@id": "bts:Patella" }, { - "@id": "bts:Canfosfamide" + "@id": "bts:PectoralLymphNode" }, { - "@id": "bts:CanfosfamideHydrochloride" + "@id": "bts:PectoralisMajor" }, { - "@id": "bts:Cannabidiol" + "@id": "bts:PelvicLymphNode" }, { - "@id": "bts:Cantrixil" + "@id": "bts:Pelvis" }, { - "@id": "bts:CantuzumabRavtansine" + "@id": "bts:Penis" }, { - "@id": "bts:Capecitabine" + "@id": "bts:Pericardium" }, { - "@id": "bts:CapecitabineRapidlyDisintegratingTablet" + "@id": "bts:Perineum" }, { - "@id": "bts:Capivasertib" + "@id": "bts:PeripheralNerve" }, { - "@id": "bts:Capmatinib" + "@id": "bts:PeritonealCavity" }, { - "@id": "bts:Captopril" + "@id": "bts:Peritoneum" }, { - "@id": "bts:CART-CellsAMG119" + "@id": "bts:PharyngealTonsil" }, { - "@id": "bts:Caracemide" + "@id": "bts:Pharynx" }, { - "@id": "bts:Carbendazim" + "@id": "bts:PiaMater" }, { - "@id": "bts:Carbetimer" + "@id": "bts:PinealGland" }, { - "@id": "bts:Carbogen" + "@id": "bts:PituitaryGland" }, { - "@id": "bts:CarbonC14-pamiparib" + "@id": "bts:Placenta" }, { - "@id": "bts:Carboplatin" + "@id": "bts:PlantarFascia" }, { - "@id": "bts:Carboquone" + "@id": "bts:PlantarRegion" }, { - "@id": "bts:Carboxyamidotriazole" + "@id": "bts:Pleura" }, { - "@id": "bts:CarboxyamidotriazoleOrotate" + "@id": "bts:PonsVarolii" }, { - "@id": "bts:CarboxyphenylRetinamide" + "@id": "bts:PoplitealLymphNode" }, { - "@id": "bts:Carfilzomib" + "@id": "bts:PortalLymphNode" }, { - "@id": "bts:Caricotamide/Tretazicar" + "@id": "bts:PostcricoidRegion" }, { - "@id": "bts:Carlumab" + "@id": "bts:PosteriorCranialFossa" }, { - "@id": "bts:Carmofur" + "@id": "bts:PosteriorMediastinum" }, { - "@id": "bts:Carmustine" + "@id": "bts:PosteriorWalloftheBladder" }, { - "@id": "bts:CarmustineImplant" + "@id": "bts:PosteriorWalloftheHypopharynx" }, { - "@id": "bts:CarmustineinEthanol" + "@id": "bts:PosteriorWalloftheNasopharynx" }, { - "@id": "bts:CarmustineSustained-ReleaseImplantWafer" + "@id": "bts:PosteriorWalloftheOropharynx" }, { - "@id": "bts:Carotuximab" + "@id": "bts:PosteriorWallofthePharynx" }, { - "@id": "bts:Carubicin" + "@id": "bts:PreauricularLymphNode" }, { - "@id": "bts:CarubicinHydrochloride" + "@id": "bts:ProstateGland" }, { - "@id": "bts:Carzelesin" + "@id": "bts:ProstaticUtricle" }, { - "@id": "bts:Carzinophilin" + "@id": "bts:PsoasMuscle" }, { - "@id": "bts:CathelicidinLL-37" + "@id": "bts:PubicBone" }, { - "@id": "bts:CationicLiposome-EncapsulatedPaclitaxel" + "@id": "bts:PubicSymphysis" }, { - "@id": "bts:CationicPeptideCreamCypep-1" + "@id": "bts:Pulmonary" }, { - "@id": "bts:Catumaxomab" + "@id": "bts:PulmonaryHilarLymphNode" }, { - "@id": "bts:CBP/beta-cateninAntagonistPRI-724" + "@id": "bts:Putamen" }, { - "@id": "bts:CBP/beta-cateninModulatorE7386" + "@id": "bts:Pylorus" }, { - "@id": "bts:CCR2AntagonistCCX872-B" + "@id": "bts:PyriformSinus" }, { - "@id": "bts:CCR2AntagonistPF-04136309" + "@id": "bts:QuadricepsMuscleoftheThigh" }, { - "@id": "bts:CCR2/CCR5AntagonistBMS-813160" + "@id": "bts:RadialArtery" }, { - "@id": "bts:CCR4InhibitorFLX475" + "@id": "bts:RadialNerve" }, { - "@id": "bts:CD11bAgonistGB1275" + "@id": "bts:RadiusBone" }, { - "@id": "bts:CD123-CD33CompoundCARTCells" + "@id": "bts:RathkePouch" }, { - "@id": "bts:CD123-specificTargetingModuleTM123" + "@id": "bts:RectosigmoidColon" }, { - "@id": "bts:CD20-CD19CompoundCARTCells" + "@id": "bts:RectosigmoidRegion" }, { - "@id": "bts:CD28/ICOSAntagonistALPN-101" + "@id": "bts:Rectum" }, { - "@id": "bts:CD4-specificTelomerasePeptideVaccineUCPVax" + "@id": "bts:RectusAbdominis" }, { - "@id": "bts:CD40AgonistMonoclonalAntibodyCP-870;893" + "@id": "bts:Renal" }, { - "@id": "bts:CD40AgonisticMonoclonalAntibodyAPX005M" + "@id": "bts:RenalArtery" }, { - "@id": "bts:CD44TargetedAgentSPL-108" + "@id": "bts:RenalCalyx" }, { - "@id": "bts:CD44v6-specificCART-cells" + "@id": "bts:RenalPelvis" }, { - "@id": "bts:CD47AntagonistALX148" + "@id": "bts:ReticuloendothelialSystem" }, { - "@id": "bts:CD73InhibitorAB680" + "@id": "bts:Retina" }, { - "@id": "bts:CD73InhibitorLY3475070" + "@id": "bts:RetromolarTrigone" }, { - "@id": "bts:CD80-FcFusionProteinALPN-202" + "@id": "bts:RetroperitonealLymphNode" }, { - "@id": "bts:CD80-FcFusionProteinFPT155" + "@id": "bts:Retroperitoneum" }, { - "@id": "bts:CDC7InhibitorTAK-931" + "@id": "bts:RetropharyngealLymphNode" }, { - "@id": "bts:CDC7KinaseInhibitorBMS-863233" + "@id": "bts:RoundLigamentoftheUterus" }, { - "@id": "bts:CDC7KinaseInhibitorLY3143921Hydrate" + "@id": "bts:SacralBone" }, { - "@id": "bts:CDC7KinaseInhibitorNMS-1116354" + "@id": "bts:SacralLymphNode" }, { - "@id": "bts:CDKInhibitorAT7519" + "@id": "bts:SacralNerve" }, { - "@id": "bts:CDKInhibitorR547" + "@id": "bts:SacralPlexus" }, { - "@id": "bts:CDKInhibitorSNS-032" + "@id": "bts:SalivaryGland" }, { - "@id": "bts:CDK/JAK2/FLT3InhibitorTG02Citrate" + "@id": "bts:ScaleneLymphNode" }, { - "@id": "bts:CDK1InhibitorBEY1107" + "@id": "bts:Scalp" }, { - "@id": "bts:CDK1/2/4InhibitorAG-024322" + "@id": "bts:Scapula" }, { - "@id": "bts:CDK2InhibitorPF-07104091" + "@id": "bts:SciaticNerve" }, { - "@id": "bts:CDK2/4/6/FLT3InhibitorFN-1501" + "@id": "bts:Sclera" }, { - "@id": "bts:CDK2/5/9InhibitorCYC065" + "@id": "bts:Scrotum" }, { - "@id": "bts:CDK4InhibitorP1446A-05" + "@id": "bts:SellaTurcica" }, { - "@id": "bts:CDK4/6Inhibitor" + "@id": "bts:SeminalVesicle" }, { - "@id": "bts:CDK4/6InhibitorBPI-16350" + "@id": "bts:Shoulder" }, { - "@id": "bts:CDK4/6InhibitorCS3002" + "@id": "bts:ShoulderGirdle" }, { - "@id": "bts:CDK4/6InhibitorFCN-437" + "@id": "bts:ShoulderJoint" }, { - "@id": "bts:CDK4/6InhibitorG1T38" + "@id": "bts:SigmoidColon" }, { - "@id": "bts:CDK4/6InhibitorHS-10342" + "@id": "bts:SkeletalMuscleTissue" }, { - "@id": "bts:CDK4/6InhibitorSHR6390" + "@id": "bts:Skin" }, { - "@id": "bts:CDK4/6InhibitorTQB3616" + "@id": "bts:SkinOfTheAxilla" }, { - "@id": "bts:CDK7InhibitorCT7001" + "@id": "bts:SkinoftheFace" }, { - "@id": "bts:CDK7InhibitorSY-1365" + "@id": "bts:SkinoftheLip" }, { - "@id": "bts:CDK7InhibitorSY-5609" + "@id": "bts:SkinoftheLowerLimbandHip" }, { - "@id": "bts:CDK8/19InhibitorSEL120" + "@id": "bts:SkinoftheScalpandNeck" }, { - "@id": "bts:CDK9InhibitorAZD4573" + "@id": "bts:SkinoftheTrunk" }, { - "@id": "bts:CEA-MUC-1-TRICOMVaccineCV301" + "@id": "bts:SkinoftheUpperLimbandShoulder" }, { - "@id": "bts:CEA-targetingAgentRG6123" + "@id": "bts:Skull" }, { - "@id": "bts:CEBPA-targetingsaRNAMTL-CEBPALiposome" + "@id": "bts:Skullcap" }, { - 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"@id": "bts:Dynemicin" + "@id": "bts:Altretamine" }, { - "@id": "bts:DynemicinA" + "@id": "bts:Alvespimycin" }, { - "@id": "bts:E2F1PathwayActivatorARQ171" + "@id": "bts:AlvespimycinHydrochloride" }, { - "@id": "bts:EBNA-1inhibitorVK-2019" + "@id": "bts:Alvocidib" }, { - "@id": "bts:Echinomycin" + "@id": "bts:AlvocidibHydrochloride" }, { - "@id": "bts:Ecromeximab" + "@id": "bts:AlvocidibProdrugTP-1287" }, { - "@id": "bts:Edatrexate" + "@id": "bts:Amatuximab" }, { - "@id": "bts:Edelfosine" + "@id": "bts:Ambamustine" }, { - "@id": "bts:Edicotinib" + "@id": "bts:Ambazone" }, { - "@id": "bts:Edodekinalfa" + "@id": "bts:Amblyomin-X" }, { - "@id": "bts:Edotecarin" + "@id": "bts:Amcasertib" }, { - "@id": "bts:Edrecolomab" + "@id": "bts:Ametantrone" }, { - "@id": "bts:EEDInhibitorMAK683" + "@id": "bts:Amifostine" }, { - "@id": "bts:Efatutazone" + "@id": "bts:AminoAcidInjection" }, { - "@id": "bts:EfatutazoneDihydrochloride" + "@id": "bts:Aminocamptothecin" }, { - "@id": "bts:Efizonerimod" + "@id": "bts:AminocamptothecinColloidalDispersion" }, { - "@id": "bts:Eflornithine" + "@id": "bts:AminoflavoneProdrugAFP464" }, { - "@id": "bts:EflornithineHydrochloride" + "@id": "bts:Aminopterin" }, { - "@id": "bts:EftilagimodAlpha" + "@id": "bts:AminopterinSodium" }, { - "@id": "bts:EftozanerminAlfa" + "@id": "bts:Amivantamab" }, { - "@id": "bts:Eg5Kinesin-RelatedMotorProteinInhibitor4SC-205" + "@id": "bts:AmolimogeneBepiplasmid" }, { - "@id": "bts:Eg5Kinesin-RelatedMotorProteinInhibitorARQ621" + "@id": "bts:AmonafideL-Malate" }, { - "@id": "bts:EGb761" + "@id": "bts:Amrubicin" }, { - "@id": "bts:EGFRAntagonistHemay022" + "@id": "bts:AmrubicinHydrochloride" }, { - "@id": "bts:EGFRAntisenseDNABB-401" + "@id": "bts:Amsacrine" }, { - "@id": "bts:EGFRInhibitorAZD3759" + "@id": "bts:AmsacrineLactate" }, { - "@id": "bts:EGFRInhibitorBIBX1382" + "@id": "bts:Amsilarotene" }, { - "@id": "bts:EGFRInhibitorDBPR112" + "@id": "bts:Amustaline" }, { - "@id": "bts:EGFRInhibitorPD-168393" + "@id": "bts:AmustalineDihydrochloride" }, { - "@id": "bts:EGFRInhibitorTY-9591" + "@id": "bts:Amuvatinib" }, { - "@id": "bts:EGFRMutant-selectiveInhibitorTQB3804" + "@id": "bts:AmuvatinibHydrochloride" }, { - "@id": "bts:EGFRMutant-specificInhibitorBPI-7711" + "@id": "bts:Anakinra" }, { - "@id": "bts:EGFRMutant-specificInhibitorCK-101" + "@id": "bts:Anastrozole" }, { - "@id": "bts:EGFRMutant-specificInhibitorD-0316" + "@id": "bts:Anaxirone" }, { - "@id": "bts:EGFRMutant-specificInhibitorZN-e4" + "@id": "bts:Ancitabine" }, { - "@id": "bts:EGFRT790MAntagonistBPI-15086" + "@id": "bts:AncitabineHydrochloride" }, { - "@id": "bts:EGFRT790MInhibitorHS-10296" + "@id": "bts:Andecaliximab" }, { - "@id": "bts:EGFR/EGFRvIIIInhibitorWSD0922-FU" + "@id": "bts:AndrogenAntagonistAPC-100" }, { - "@id": "bts:EGFR/FLT3/AblInhibitorSKLB1028" + "@id": "bts:AndrogenReceptorAntagonistBAY1161116" }, { - "@id": "bts:EGFR/HER1/HER2InhibitorPKI166" + "@id": "bts:AndrogenReceptorAntagonistSHR3680" }, { - "@id": "bts:EGFR/HER2InhibitorAP32788" + "@id": "bts:AndrogenReceptorAntagonistTAS3681" }, { - "@id": "bts:EGFR/HER2InhibitorAV-412" + "@id": "bts:AndrogenReceptorAntagonistTRC253" }, { - 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"@id": "bts:ElesclomolSodium" + "@id": "bts:Ang2/VEGF-BindingPeptides-AntibodyFusionProteinCVX-241" }, { - "@id": "bts:Elgemtumab" + "@id": "bts:AngiogenesisInhibitorGT-111" }, { - "@id": "bts:Elinafide" + "@id": "bts:AngiogenesisInhibitorJI-101" }, { - "@id": "bts:Elisidepsin" + "@id": "bts:Angiogenesis/HeparanaseInhibitorPG545" }, { - "@id": "bts:Elliptinium" + "@id": "bts:Angiopoietin-2-specificFusionProteinPF-04856884" }, { - "@id": "bts:ElliptiniumAcetate" + "@id": "bts:AnhydrousEnol-oxaloacetate" }, { - "@id": "bts:Elmustine" + "@id": "bts:Anhydrovinblastine" }, { - "@id": "bts:Elotuzumab" + "@id": "bts:AnilineMustard" }, { - "@id": "bts:Elpamotide" + "@id": "bts:AnlotinibHydrochloride" }, { - "@id": "bts:Elsamitrucin" + "@id": "bts:Annamycin" }, { - "@id": "bts:Eltanexor" + "@id": "bts:AnnamycinLiposomal" }, { - "@id": "bts:Emactuzumab" + "@id": "bts:AnnonaceousAcetogenins" }, { - "@id": "bts:Emapalumab" + "@id": "bts:AnsamitomicinP-3" }, { - "@id": "bts:Emepepimut-S" + "@id": "bts:Anthramycin" }, { - 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"@id": "bts:Epratuzumab-cys-tesirine" + "@id": "bts:Anti-CD123-PyrrolobenzodiazepineDimerAntibodyDrugConjugateSGN-CD123A" }, { - "@id": "bts:ERalphaProteolysis-targetingChimeraProteinDegraderARV-471" + "@id": "bts:Anti-CD123/CD3BispecificAntibodyAPVO436" }, { - "@id": "bts:ERa36ModulatorIcaritin" + "@id": "bts:Anti-CD123/CD3BispecificAntibodyJNJ-63709178" }, { - "@id": "bts:ErastinAnaloguePRLX93936" + "@id": "bts:Anti-CD123/CD3BiTEAntibodySAR440234" }, { - "@id": "bts:Erbulozole" + "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyADG106" }, { - "@id": "bts:Erdafitinib" + "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyAGEN2373" }, { - "@id": "bts:Eribulin" + "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyATOR-1017" }, { - "@id": "bts:EribulinMesylate" + "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyCTX-471" }, { - "@id": "bts:ERK1/2InhibitorASTX029" + "@id": "bts:Anti-CD137AgonisticMonoclonalAntibodyLVGN6051" }, { - "@id": "bts:ERKInhibitorCC-90003" + "@id": "bts:Anti-CD157MonoclonalAntibodyMEN1112" }, { - "@id": "bts:ERKInhibitorGDC-0994" + "@id": "bts:Anti-CD166Probody-drugConjugateCX-2009" }, { - "@id": "bts:ERKInhibitorLTT462" + "@id": "bts:Anti-CD19Antibody-drugConjugateSGN-CD19B" }, { - "@id": "bts:ERKInhibitorMK-8353" + "@id": "bts:Anti-CD19Antibody-T-cellReceptor-expressingT-cellsET019003" }, { - "@id": "bts:ERK1/2InhibitorASN007" + "@id": "bts:Anti-CD19iCARNKCells" }, { - "@id": "bts:ERK1/2InhibitorHH2710" + "@id": "bts:Anti-CD19MonoclonalAntibodyDI-B4" }, { - "@id": "bts:ERK1/2InhibitorJSI-1187" + "@id": "bts:Anti-CD19MonoclonalAntibodyMDX-1342" }, { - "@id": "bts:ERK1/2InhibitorKO-947" + "@id": "bts:Anti-CD19MonoclonalAntibodyMEDI-551" }, { - "@id": "bts:ERK1/2InhibitorLY3214996" + "@id": "bts:Anti-CD19MonoclonalAntibodyXmAb5574" }, { - "@id": "bts:Erlotinib" + "@id": "bts:Anti-CD19-DM4ImmunoconjugateSAR3419" }, { - "@id": "bts:ErlotinibHydrochloride" + "@id": "bts:Anti-CD19/Anti-CD22BispecificImmunotoxinDT2219ARL" }, { - "@id": "bts:Ertumaxomab" + "@id": "bts:Anti-CD19/CD22CARNKCells" }, { - "@id": "bts:Erythrocyte-encapsulatedL-asparaginaseSuspension" + "@id": "bts:Anti-CD19/CD3BiTEAntibodyAMG562" }, { - "@id": "bts:Esorubicin" + "@id": "bts:Anti-CD19/CD3TetravalentAntibodyAFM11" }, { - "@id": "bts:EsorubicinHydrochloride" + "@id": "bts:Anti-CD20MonoclonalAntibodyB001" }, { - "@id": "bts:EsperamicinA1" + "@id": "bts:Anti-CD20MonoclonalAntibodyBAT4306F" }, { - "@id": "bts:Essiac" + "@id": "bts:Anti-CD20MonoclonalAntibodyMIL62" }, { - "@id": "bts:EsterifiedEstrogens" + "@id": "bts:Anti-CD20MonoclonalAntibodyPRO131921" }, { - "@id": "bts:EstradiolValerate" + "@id": "bts:Anti-CD20MonoclonalAntibodySCT400" }, { - "@id": "bts:Estramustine" + "@id": "bts:Anti-CD20MonoclonalAntibodyTL011" }, { - "@id": "bts:EstramustinePhosphateSodium" + "@id": "bts:Anti-CD20MonoclonalAntibody-Interferon-alphaFusionProteinIGN002" }, { - "@id": "bts:EstrogenReceptorAgonistGTx-758" + "@id": "bts:Anti-CD20-engineeredToxinBodyMT-3724" }, { - "@id": "bts:Estrogens;Conjugated" + "@id": "bts:Anti-CD20/Anti-CD3BispecificIgMAntibodyIGM2323" }, { - 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"@id": "bts:MetAP2InhibitorSDX-7320" + "@id": "bts:Cactinomycin" }, { - "@id": "bts:Metarrestin" + "@id": "bts:CaffeicAcidPhenethylEster" }, { - "@id": "bts:MetatinibTromethamine" + "@id": "bts:CAIXInhibitorDTP348" }, { - "@id": "bts:Metformin" + "@id": "bts:CAIXInhibitorSLC-0111" }, { - "@id": "bts:MetforminHydrochloride" + "@id": "bts:CalaspargasePegol-mknl" }, { - "@id": "bts:MethanolExtractionResidueofBCG" + "@id": "bts:Calcitriol" }, { - "@id": "bts:Methazolamide" + "@id": "bts:CalciumRelease-activatedChannelInhibitorCM4620" }, { - "@id": "bts:MethionineAminopeptidase2InhibitorM8891" + "@id": "bts:CalciumRelease-activatedChannelsInhibitorRP4010" }, { - "@id": "bts:MethionineAminopeptidase2InhibitorPPI-2458" + "@id": "bts:CalciumSaccharate" }, { - "@id": "bts:Methotrexate" + "@id": "bts:Calculusbovis/Moschus/Olibanum/MyrrhaCapsule" }, { - "@id": "bts:MethotrexateSodium" + "@id": "bts:CalicheamicinGamma1I" }, { - "@id": "bts:Methotrexate-ETherapeuticImplant" + "@id": "bts:CamidanlumabTesirine" }, { - 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"@id": "bts:Mevociclib" + "@id": "bts:Cannabidiol" }, { - "@id": "bts:Mezagitamab" + "@id": "bts:Cantrixil" }, { - "@id": "bts:Mibefradil" + "@id": "bts:CantuzumabRavtansine" }, { - "@id": "bts:MibefradilDihydrochloride" + "@id": "bts:Capecitabine" }, { - "@id": "bts:MicellarNanoparticle-encapsulatedEpirubicin" + "@id": "bts:CapecitabineRapidlyDisintegratingTablet" }, { - "@id": "bts:MicroNeedleArray-Doxorubicin" + "@id": "bts:Capivasertib" }, { - "@id": "bts:MicrobiomeGEN-001" + "@id": "bts:Capmatinib" }, { - "@id": "bts:Microbiome-derivedPeptideVaccineEO2401" + "@id": "bts:Captopril" }, { - "@id": "bts:Microparticle-encapsulatedCYP1B1-encodingDNAVaccineZYC300" + "@id": "bts:CART-CellsAMG119" }, { - "@id": "bts:MicrotubuleInhibitorSCB01A" + "@id": "bts:Caracemide" }, { - "@id": "bts:Midostaurin" + "@id": "bts:Carbendazim" }, { - "@id": "bts:Mifamurtide" + "@id": "bts:Carbetimer" }, { - "@id": "bts:Mifepristone" + "@id": "bts:Carbogen" }, { - "@id": "bts:MilademetanTosylate" + "@id": "bts:CarbonC14-pamiparib" }, { - 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"@id": "bts:Molibresib" + "@id": "bts:CDK2/4/6/FLT3InhibitorFN-1501" }, { - "@id": "bts:MolibresibBesylate" + "@id": "bts:CDK2/5/9InhibitorCYC065" }, { - "@id": "bts:Momelotinib" + "@id": "bts:CDK4InhibitorP1446A-05" }, { - "@id": "bts:Monalizumab" + "@id": "bts:CDK4/6Inhibitor" }, { - "@id": "bts:MonocarboxylateTransporter1InhibitorAZD3965" + "@id": "bts:CDK4/6InhibitorBPI-16350" }, { - "@id": "bts:MonoclonalAntibody105AD7Anti-idiotypeVaccine" + "@id": "bts:CDK4/6InhibitorCS3002" }, { - "@id": "bts:MonoclonalAntibody11D10" + "@id": "bts:CDK4/6InhibitorFCN-437" }, { - "@id": "bts:MonoclonalAntibody11D10Anti-IdiotypeVaccine" + "@id": "bts:CDK4/6InhibitorG1T38" }, { - "@id": "bts:MonoclonalAntibody14G2A" + "@id": "bts:CDK4/6InhibitorHS-10342" }, { - "@id": "bts:MonoclonalAntibody1F5" + "@id": "bts:CDK4/6InhibitorSHR6390" }, { - "@id": "bts:MonoclonalAntibody3622W94" + "@id": "bts:CDK4/6InhibitorTQB3616" }, { - "@id": "bts:MonoclonalAntibody3F8" + "@id": "bts:CDK7InhibitorCT7001" }, { - "@id": "bts:MonoclonalAntibody3H1Anti-IdiotypeVaccine" + "@id": "bts:CDK7InhibitorSY-1365" }, { - 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"@id": "bts:MonoclonalAntibodyD6.12" + "@id": "bts:Celecoxib" }, { - "@id": "bts:MonoclonalAntibodyE2.3" + "@id": "bts:CellCycleCheckpoint/DNARepairAntagonistIC83" }, { - "@id": "bts:MonoclonalAntibodyF19" + "@id": "bts:Cemadotin" }, { - "@id": "bts:MonoclonalAntibodyGD2Anti-IdiotypeVaccine" + "@id": "bts:CemadotinHydrochloride" }, { - "@id": "bts:MonoclonalAntibodyHeFi-1" + "@id": "bts:Cemiplimab" }, { - "@id": "bts:MonoclonalAntibodyHu3S193" + "@id": "bts:Cenersen" }, { - "@id": "bts:MonoclonalAntibodyHuAFP31" + "@id": "bts:Cenisertib" }, { - "@id": "bts:MonoclonalAntibodyHuHMFG1" + "@id": "bts:CENP-EInhibitorGSK-923295" }, { - "@id": "bts:MonoclonalAntibodyhuJ591" + "@id": "bts:Ceralasertib" }, { - "@id": "bts:MonoclonalAntibodyHuPAM4" + "@id": "bts:CeramideNanoliposome" }, { - "@id": "bts:MonoclonalAntibodyIMMU-14" + "@id": "bts:Cerdulatinib" }, { - "@id": "bts:MonoclonalAntibodyL6" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-92480" }, { - "@id": "bts:MonoclonalAntibodyLym-1" + "@id": "bts:CereblonE3UbiquitinLigaseModulatingAgentCC-99282" }, { - 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Multiple values permitted, comma separated.", - "rdfs:label": "AlternativeNames", - "rdfs:subClassOf": [ + "@id": "bts:NilotinibHydrochlorideAnhydrous" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Alternative Names", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:Email", - "@type": "rdfs:Class", - "rdfs:comment": "Email address of the individual", - "rdfs:label": "Email", - "rdfs:subClassOf": [ + "@id": "bts:NilotinibHydrochlorideMonohydrate" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Email", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Url", - "@type": "rdfs:Class", - "rdfs:comment": "URL, e.g., individual's home page address", - "rdfs:label": "Url", - "rdfs:subClassOf": [ + "@id": "bts:Nilutamide" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Url", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:OrcidId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique identifier (ORCID ID) of the individual", - "rdfs:label": "OrcidId", - "rdfs:subClassOf": [ + "@id": "bts:Nimesulide-HyaluronicAcidConjugateCA102N" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Orcid Id", - "sms:required": "sms:false", - "sms:validationRules": [ - "regex search \\d{4}\\-\\d{4}\\-\\d{4}\\-\\d{3}(\\d|X)" - ] - }, - { - "@id": "bts:SynapseProfileId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page.", - "rdfs:label": "SynapseProfileId", - "rdfs:subClassOf": [ + "@id": "bts:Nimodipine" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synapse Profile Id", - "sms:required": "sms:false", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:LastKnownInstitution", - "@type": "rdfs:Class", - "rdfs:comment": "Last known institutional affiliation of the individual.", - "rdfs:label": "LastKnownInstitution", - "rdfs:subClassOf": [ + "@id": "bts:Nimotuzumab" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Last Known Institution", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkingGroupParticipation", - "@type": "rdfs:Class", - "rdfs:comment": "CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.", - "rdfs:label": "WorkingGroupParticipation", - "rdfs:subClassOf": [ + "@id": "bts:Nimustine" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:NimustineHydrochloride" + }, { - "@id": "bts:CancerMetabolism" + "@id": "bts:NingetinibTosylate" }, { - "@id": "bts:CellandTissueMechanics" + "@id": "bts:Nintedanib" }, { - "@id": "bts:EducationandOutreach" + "@id": "bts:Niraparib" }, { - "@id": "bts:ImageAnalysis" + "@id": "bts:NiraparibTosylateMonohydrate" }, { - "@id": "bts:NavigatingCancerwithScienceandArt" + "@id": "bts:Nirogacestat" }, { - "@id": "bts:None" + "@id": "bts:NitricOxide-ReleasingAcetylsalicylicAcidDerivative" }, { - "@id": "bts:PatientAdvocacyWorkingGroup" + "@id": "bts:NitrogenMustardProdrugPR-104" }, { - "@id": "bts:Protein-ProteinInteractions" + "@id": "bts:NitroglycerinTransdermalPatch" }, { - "@id": "bts:ResourceandDataSharing" - } - ], - "sms:displayName": "Working Group Participation", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:CancerMetabolism", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CancerMetabolism", - "rdfs:subClassOf": [ + "@id": "bts:Nivolumab" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Cancer Metabolism", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CellandTissueMechanics", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CellandTissueMechanics", - "rdfs:subClassOf": [ + "@id": "bts:NLRP3AgonistBMS-986299" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Cell and Tissue Mechanics", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:EducationandOutreach", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "EducationandOutreach", - "rdfs:subClassOf": [ + "@id": "bts:Nocodazole" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Education and Outreach", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageAnalysis", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ImageAnalysis", - "rdfs:subClassOf": [ + "@id": "bts:Nogalamycin" + }, { - "@id": "bts:WorkingGroupParticipation" + "@id": "bts:NogapendekinAlfa" }, { - "@id": "bts:ToolOperation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Analysis", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NavigatingCancerwithScienceandArt", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NavigatingCancerwithScienceandArt", - "rdfs:subClassOf": [ + "@id": "bts:NolatrexedDihydrochloride" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Navigating Cancer with Science and Art", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PatientAdvocacyWorkingGroup", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PatientAdvocacyWorkingGroup", - "rdfs:subClassOf": [ + "@id": "bts:Non-SmallCellLungCancermRNA-DerivedVaccineCV9201" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Patient Advocacy Working Group", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Protein-ProteinInteractions", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Protein-ProteinInteractions", - "rdfs:subClassOf": [ + "@id": "bts:Norgestrel" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Protein-Protein Interactions", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ResourceandDataSharing", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ResourceandDataSharing", - "rdfs:subClassOf": [ + "@id": "bts:NorthAmericanGinsengExtractAFX-2" + }, { - "@id": "bts:WorkingGroupParticipation" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Resource and Data Sharing", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ChairRoles", - "@type": "rdfs:Class", - "rdfs:comment": "Committee or working group chair role(s) the individual fulfilled (current and former). Multiple values permitted, comma separated.", - "rdfs:label": "ChairRoles", - "rdfs:subClassOf": [ + "@id": "bts:Nortopixantrone" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Noscapine" + }, { - "@id": "bts:AnnualMeeting" + "@id": "bts:NoscapineHydrochloride" }, { - "@id": "bts:None" + "@id": "bts:NotOtherwiseSpecified" }, { - "@id": "bts:SteeringCommittee" + "@id": "bts:NotchSignalingInhibitorPF-06650808" }, { - "@id": "bts:WorkingGroup" - } - ], - "sms:displayName": "Chair Roles", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:AnnualMeeting", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AnnualMeeting", - "rdfs:subClassOf": [ + "@id": "bts:NotchSignalingPathwayInhibitorMK0752" + }, { - "@id": "bts:ChairRoles" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Annual Meeting", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SteeringCommittee", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SteeringCommittee", - "rdfs:subClassOf": [ + "@id": "bts:NTRK/ROS1InhibitorDS-6051b" + }, { - "@id": "bts:ChairRoles" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Steering Committee", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkingGroup", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "WorkingGroup", - "rdfs:subClassOf": [ + "@id": "bts:NucleolinAntagonistIPP-204106N" + }, { - "@id": "bts:ChairRoles" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Working Group", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConsentForPortalDisplay", - "@type": "rdfs:Class", - "rdfs:comment": "Consent from individual to display Person information in the CCKP", - "rdfs:label": "ConsentForPortalDisplay", - "rdfs:subClassOf": [ + "@id": "bts:NucleosideAnalogDFP-10917" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:NucleotideAnalogProdrugNUC-3373" + }, { - "@id": "bts:No" + "@id": "bts:NucleotideAnalogueGS9219" }, { - "@id": "bts:Yes" - } - ], - "sms:displayName": "Consent For Portal Display", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:PortalDisplay", - "@type": "rdfs:Class", - "rdfs:comment": "Display content in CCKP", - "rdfs:label": "PortalDisplay", - "rdfs:subClassOf": [ + "@id": "bts:Numidargistat" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Nurulimab" + }, { - "@id": "bts:FALSE" + "@id": "bts:Nutlin-3a" }, { - "@id": "bts:TRUE" - } - ], - "sms:displayName": "Portal Display", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:FALSE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "FALSE", - "rdfs:subClassOf": [ + "@id": "bts:NutraceuticalTBL-12" + }, { - "@id": "bts:PortalDisplay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "FALSE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TRUE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TRUE", - "rdfs:subClassOf": [ + "@id": "bts:NY-ESO-1PlasmidDNACancerVaccinepPJV7611" + }, { - "@id": "bts:PortalDisplay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TRUE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PersonView", - "@type": "rdfs:Class", - "rdfs:comment": "The denormalized manifest for person submission.", - "rdfs:label": "PersonView", - "rdfs:subClassOf": [ + "@id": "bts:NY-ESO-1-specificTCRGene-transducedTLymphocytesTBI-1301" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person View", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:NY-ESO-1/GLA-SEVaccineID-G305" + }, { - "@id": "bts:GrantView" - } - ], - "sms:requiresDependency": [ + "@id": "bts:NY-ESO-B" + }, { - "@id": "bts:Component" + "@id": "bts:O-Chloroacetylcarbamoylfumagillol" }, { - "@id": "bts:PersonViewId" + "@id": "bts:O6-Benzylguanine" }, { - "@id": "bts:GrantViewKey" + "@id": "bts:ObatoclaxMesylate" }, { - "@id": "bts:PersonConsortiumName" + "@id": "bts:Obinutuzumab" }, { - "@id": "bts:Name" + "@id": "bts:OblimersenSodium" }, { - "@id": "bts:AlternativeNames" + "@id": "bts:Ocaratuzumab" }, { - "@id": "bts:Email" + "@id": "bts:Ocrelizumab" }, { - "@id": "bts:Url" + "@id": "bts:Octreotide" }, { - "@id": "bts:OrcidId" + "@id": "bts:OctreotideAcetate" }, { - "@id": "bts:SynapseProfileId" + "@id": "bts:OctreotidePamoate" }, { - "@id": "bts:LastKnownInstitution" + "@id": "bts:Odronextamab" }, { - "@id": "bts:WorkingGroupParticipation" + "@id": "bts:Ofatumumab" }, { - "@id": "bts:ChairRoles" + "@id": "bts:OfranergeneObadenovec" }, { - "@id": "bts:ConsentForPortalDisplay" + "@id": "bts:OglufanideDisodium" }, { - "@id": "bts:PortalDisplay" + "@id": "bts:Olaparib" }, { - "@id": "bts:PersonPublications" + "@id": "bts:OlaptesedPegol" }, { - "@id": "bts:PersonDatasets" + "@id": "bts:Olaratumab" }, { - "@id": "bts:PersonTools" + "@id": "bts:Oleandrin" }, { - "@id": "bts:PersonEducationalResources" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:PersonViewId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "PersonViewId", - "rdfs:subClassOf": [ + "@id": "bts:Oleclumab" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PersonView_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:PersonConsortiumName", - "@type": "rdfs:Class", - "rdfs:comment": "Consortium(s) associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonConsortiumName", - "rdfs:subClassOf": [ + "@id": "bts:Oligo-fucoidan" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:OligonucleotideSPC2996" + }, { - "@id": "bts:CCBIR" + "@id": "bts:Olinvacimab" }, { - "@id": "bts:CSBC" + "@id": "bts:Olivomycin" }, { - "@id": "bts:HTAN" + "@id": "bts:Olmutinib" }, { - "@id": "bts:ICBP" + "@id": "bts:Oltipraz" }, { - "@id": "bts:MetNet" + "@id": "bts:Olutasidenib" }, { - "@id": "bts:NCI" + "@id": "bts:OlvimulogeneNanivacirepvec" }, { - "@id": "bts:NCIClinicalandTranslationalExploratory/DevelopmentalStudies" + "@id": "bts:OmacetaxineMepesuccinate" }, { - "@id": "bts:PDMC" + "@id": "bts:Ombrabulin" }, { - "@id": "bts:PS-ON" + "@id": "bts:Omipalisib" }, { - "@id": "bts:SageBionetworks" + "@id": "bts:Onalespib" }, { - "@id": "bts:TEC" - } - ], - "sms:displayName": "Person Consortium Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonPublications", - "@type": "rdfs:Class", - "rdfs:comment": "A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonPublications", - "rdfs:subClassOf": [ + "@id": "bts:OnalespibLactate" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Publications", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonDatasets", - "@type": "rdfs:Class", - "rdfs:comment": "A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonDatasets", - "rdfs:subClassOf": [ + "@id": "bts:Onartuzumab" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Datasets", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonTools", - "@type": "rdfs:Class", - "rdfs:comment": "A list of the tool names associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonTools", - "rdfs:subClassOf": [ + "@id": "bts:Onatasertib" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Tools", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonEducationalResources", - "@type": "rdfs:Class", - "rdfs:comment": "A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonEducationalResources", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticAdenovirusAd5-DNX-2401" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person Educational Resources", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PersonGrantNumber", - "@type": "rdfs:Class", - "rdfs:comment": "Grant number(s) associated with the person. Multiple values permitted, comma separated.", - "rdfs:label": "PersonGrantNumber", - "rdfs:subClassOf": [ + "@id": "bts:OncolyticAdenovirusORCA-010" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:OncolyticHerpesSimplexVirus-1ONCR-177" + }, { - "@id": "bts:Affiliated/Non-GrantAssociated" + "@id": "bts:OncolyticHSV-1C134" }, { - "@id": "bts:CA184897" + "@id": "bts:OncolyticHSV-1ExpressingIL-12andAnti-PD-1AntibodyT3011" }, { - "@id": "bts:CA184898" + "@id": "bts:OncolyticHSV-1G207" }, { - "@id": "bts:CA188388" + "@id": "bts:OncolyticHSV-1NV1020" }, { - "@id": "bts:CA193313" + "@id": "bts:OncolyticHSV-1rQNestin34.5v.2" }, { - "@id": "bts:CA193417" + "@id": "bts:OncolyticHSV-1rRp450" }, { - "@id": "bts:CA193419" + "@id": "bts:OncolyticHSV1716" }, { - "@id": "bts:CA193461" + "@id": "bts:OncolyticMeaslesVirusEncodingHelicobacterpyloriNeutrophil-activatingProtein" }, { - "@id": "bts:CA193489" + "@id": "bts:OncolyticNewcastleDiseaseVirusMEDI5395" }, { - 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"@id": "bts:PartialWaveSpectroscopy" + "@id": "bts:ResiquimodTopicalGel" }, { - "@id": "bts:PatientDerivedXenograft" + "@id": "bts:ResistantStarch" }, { - "@id": "bts:PendingAnnotation" + "@id": "bts:Resminostat" }, { - "@id": "bts:PermeabilityAssay" + "@id": "bts:Resveratrol" }, { - "@id": "bts:PhagocytosisAssay" + "@id": "bts:ResveratrolFormulationSRT501" }, { - "@id": "bts:PhotoacousticImaging" + "@id": "bts:RETInhibitorDS-5010" }, { - "@id": "bts:Photolithography" + "@id": "bts:RETMutation/FusionInhibitorBLU-667" }, { - "@id": "bts:PlasmidConstruction" + "@id": "bts:RET/SRCInhibitorTPX-0046" }, { - "@id": "bts:PlateSeq" + "@id": "bts:Retaspimycin" }, { - "@id": "bts:PointAccumulationforImaginginNanoscaleTopography" + "@id": "bts:RetaspimycinHydrochloride" }, { - "@id": "bts:PositronEmissionTomography" + "@id": "bts:Retelliptine" }, { - "@id": "bts:PrecisionRun-OnSequencing" + "@id": "bts:Retifanlimab" }, { - "@id": "bts:ProteomicsAssay" + "@id": "bts:RetinoicAcidAgentRo16-9100" }, { - 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"@id": "bts:SingleCellGelElectrophoresis" + "@id": "bts:RilimogeneGlafolivec" }, { - "@id": "bts:SingleCellRNA-Sequencing" + "@id": "bts:Rilotumumab" }, { - "@id": "bts:SingleMoleculeForsterResonanceEnergyTransfer" + "@id": "bts:Rindopepimut" }, { - "@id": "bts:SingleNucleotidePolymorphismArray" + "@id": "bts:Ripertamab" }, { - "@id": "bts:SingleNucleusRNA-Sequencing" + "@id": "bts:RIPK1InhibitorGSK3145095" }, { - "@id": "bts:Single-CellBCRSequencing" + "@id": "bts:Ripretinib" }, { - "@id": "bts:Single-CellBarcodeChip" + "@id": "bts:RisperidoneFormulationinRumenicAcid" }, { - "@id": "bts:Single-CellTCRSequencing" + "@id": "bts:Ritrosulfan" }, { - "@id": "bts:Single-MoleculeTracking" + "@id": "bts:Rituximab" }, { - "@id": "bts:SiriusRedStaining" + "@id": "bts:RituximabandHyaluronidaseHuman" }, { - "@id": "bts:SizeExclusionChromatography" + "@id": "bts:RituximabConjugateCON-4619" }, { - "@id": "bts:Small-AngleX-rayScattering" + "@id": "bts:Riviciclib" }, { - "@id": "bts:SoftAgarAssay" + "@id": "bts:Rivoceranib" }, { - 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"@id": "bts:Cryo-ElectronTomography" + "@id": "bts:Seclidemstat" }, { - "@id": "bts:DataIntegration" + "@id": "bts:SedoxantroneTrihydrochloride" }, { - "@id": "bts:Field-EmissionScanningElectronMicroscopy" + "@id": "bts:SelatinibDitosilate" }, { - "@id": "bts:Label-freeProteinQuantificationbyLC/MS" + "@id": "bts:SelectiveAndrogenReceptorModulatorRAD140" }, { - "@id": "bts:MetaboliteProfilingAssay" + "@id": "bts:SelectiveCytokineInhibitoryDrugCC-1088" }, { - "@id": "bts:ReporterGeneAssay" + "@id": "bts:SelectiveEstrogenReceptorDegraderAZD9496" }, { - "@id": "bts:Single-MoleculeLocalizationMicroscopy" + "@id": "bts:SelectiveEstrogenReceptorDegraderAZD9833" }, { - "@id": "bts:Synthesis" + "@id": "bts:SelectiveEstrogenReceptorDegraderLSZ102" }, { - "@id": "bts:TargetedTherapyAgent" + "@id": "bts:SelectiveEstrogenReceptorDegraderLX-039" }, { - "@id": "bts:TrichromeStainingMethod" + "@id": "bts:SelectiveEstrogenReceptorDegraderLY3484356" }, { - "@id": "bts:UltrasoundImaging" + "@id": "bts:SelectiveEstrogenReceptorDegraderSRN-927" }, { - "@id": "bts:TranscriptionprofilingbyNanoString" + "@id": "bts:SelectiveEstrogenReceptorModulatorCC-8490" }, { - "@id": "bts:AlcianBlueStainingMethod" + "@id": "bts:SelectiveEstrogenReceptorModulatorTAS-108" }, { - "@id": "bts:ArtificialIntelligence" + "@id": "bts:SelectiveGlucocorticoidReceptorAntagonistCORT125281" }, { - "@id": "bts:CellCulture" + "@id": "bts:SelectiveHumanEstrogen-receptorAlphaPartialAgonistTTC-352" }, { - "@id": "bts:ClinicalStudy" + "@id": "bts:Seliciclib" }, { - "@id": "bts:Cell-freeCirculatingTumorDNAAssay" + "@id": "bts:Selicrelumab" }, { - "@id": "bts:Co-ImmunoprecipitationMassSpectrometry" + "@id": "bts:Selinexor" }, { - "@id": "bts:DeepLearning" + "@id": "bts:Selitrectinib" }, { - "@id": "bts:GeneOntologyEnrichmentAnalysis" + "@id": "bts:Selonsertib" }, { - "@id": "bts:GeneSetEnrichmentAnalysis" + "@id": "bts:Selpercatinib" }, { - "@id": "bts:GeneSilencing" + "@id": "bts:Selumetinib" }, { - "@id": "bts:HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture" + "@id": "bts:SelumetinibSulfate" }, { - "@id": "bts:ImagingMassCytometry" + "@id": "bts:Semaxanib" }, { - "@id": "bts:ImmunofluorescentStainingMethod" + "@id": "bts:Semuloparin" }, { - "@id": "bts:Immunotherapy" + "@id": "bts:Semustine" }, { - "@id": "bts:ViralTransduction" + "@id": "bts:SenecaValleyVirus-001" }, { - "@id": "bts:MetastaticColonizationAssay" + "@id": "bts:Seocalcitol" }, { - "@id": "bts:PhylogeneticAnalysis" + "@id": "bts:SepantroniumBromide" }, { - "@id": "bts:PicrosiriusStaining" + "@id": "bts:Serabelisib" }, { - "@id": "bts:ScratchAssay" + "@id": "bts:SerclutamabTalirine" }, { - "@id": "bts:StructuralVariantAnalysis" + "@id": "bts:SERDD-0502" }, { - "@id": "bts:SurvivalAnalysis" + "@id": "bts:SERDG1T48" }, { - "@id": "bts:TargetedErrorCorrectionSequencing" + "@id": "bts:SERDGDC-9545" }, { - "@id": "bts:Tuba-Seq" + "@id": "bts:SERDSAR439859" }, { - "@id": "bts:SDS-PAGE" + "@id": "bts:SERDSHR9549" }, { - "@id": "bts:CellFractionation" + "@id": "bts:SERDZN-c5" }, { - "@id": "bts:MultiscaleLightSheetMicroscopy" + "@id": "bts:Serdemetan" }, { - "@id": "bts:LightSheetMicroscopy" - } - ], - "sms:displayName": "Publication Assay", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PublicationTumorType", - "@type": "rdfs:Class", - "rdfs:comment": "Tumor type(s) associated with the publication. Multiple values permitted, comma separated.", - "rdfs:label": "PublicationTumorType", - "rdfs:subClassOf": [ + "@id": "bts:Sergiolide" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Seribantumab" + }, { - "@id": "bts:CutaneousMelanoma" + "@id": "bts:Serine/ThreonineKinaseInhibitorCBP501" }, { - "@id": "bts:AcinarCellCarcinoma" + "@id": "bts:Serine/ThreonineKinaseInhibitorXL418" }, { - "@id": "bts:AcuteLymphoblasticLeukemia" + "@id": "bts:Serplulimab" }, { - "@id": "bts:AcuteMonocyticLeukemia" + "@id": "bts:Sevacizumab" }, { - "@id": "bts:AcuteMyeloidLeukemia" + "@id": "bts:Seviteronel" }, { - "@id": "bts:AcutePromyelocyticLeukemia" + "@id": "bts:SharedAnti-Idiotype-AB-S006" }, { - "@id": "bts:Adenocarcinoma" + "@id": "bts:SharedAnti-Idiotype-AB-S024A" }, { - "@id": "bts:Angiosarcoma" + "@id": "bts:SharkCartilage" }, { - "@id": "bts:Astrocytoma" + "@id": "bts:SharkCartilageExtractAE-941" }, { - "@id": "bts:AtypicalTeratoid/RhabdoidTumor" + "@id": "bts:ShenqiFuzhengInjectionSQ001" }, { - "@id": "bts:BAcuteLymphoblasticLeukemia" + "@id": "bts:Sho-Saiko-To" }, { - "@id": "bts:B-CellNon-HodgkinLymphoma" + "@id": "bts:ShortChainFattyAcidHQK-1004" }, { - "@id": "bts:BarrettEsophagus" + "@id": "bts:SHP-1AgonistSC-43" }, { - "@id": "bts:BasalCellNeoplasm" + "@id": "bts:SHP2InhibitorJAB-3068" }, { - "@id": "bts:Basal-LikeBreastCarcinoma" + "@id": "bts:SHP2InhibitorRLY-1971" }, { - "@id": "bts:BiliaryTractCarcinoma" + "@id": "bts:SHP2InhibitorRMC-4630" }, { - "@id": "bts:BladderCarcinoma" + "@id": "bts:SHP2InhibitorTNO155" }, { - "@id": "bts:BladderNeoplasm" + "@id": "bts:ShuYuWanFormula" }, { - "@id": "bts:BoneNeoplasm" + "@id": "bts:SialylTnAntigen" }, { - "@id": "bts:BrainNeoplasm" + "@id": "bts:SialylTn-KLHVaccine" }, { - "@id": "bts:BreastAdenocarcinoma" + "@id": "bts:Sibrotuzumab" }, { - "@id": "bts:BreastCarcinoma" + "@id": "bts:SiG12DLODER" }, { - "@id": "bts:BreastNeoplasm" + "@id": "bts:SilatecanAR-67" }, { - "@id": "bts:Carcinoma" + "@id": "bts:Silibinin" }, { - "@id": "bts:CarcinomaInSitu" + "@id": "bts:SiliconPhthalocyanine4" }, { - "@id": "bts:Castration-ResistantProstateCarcinoma" + "@id": "bts:SilmitasertibSodium" }, { - "@id": "bts:CellularSchwannoma" + "@id": "bts:Siltuximab" }, { - "@id": "bts:CentralNervousSystemCavernousHemangioma" + "@id": "bts:SimalikalactoneD" }, { - "@id": "bts:CentralNervousSystemNeoplasm" + "@id": "bts:Simeprevir" }, { - "@id": "bts:CerebellarNeoplasm" + "@id": "bts:SimlukafuspAlfa" }, { - "@id": "bts:CervicalCarcinoma" + "@id": "bts:Simmitinib" }, { - "@id": "bts:CervicalNeoplasm" + "@id": "bts:Simotaxel" }, { - "@id": "bts:CervicalSmallCellCarcinoma" + "@id": "bts:Simtuzumab" }, { - "@id": "bts:Cholangiocarcinoma" + "@id": "bts:Simurosertib" }, { - "@id": "bts:Chondroblastoma" + "@id": "bts:Sintilimab" }, { - "@id": "bts:Choriocarcinoma" + "@id": "bts:Siplizumab" }, { - "@id": "bts:ChronicLymphocyticLeukemia" + "@id": "bts:Sipuleucel-T" }, { - "@id": "bts:ChronicMyeloidLeukemia" + "@id": "bts:Siremadlin" }, { - "@id": "bts:ClearCellRenalCellCarcinoma" + "@id": "bts:SiRNA-transfectedPeripheralBloodMononuclearCellsAPN401" }, { - "@id": "bts:ColonAdenocarcinoma" + "@id": "bts:Sirolimus" }, { - "@id": "bts:ColonCarcinoma" + "@id": "bts:SIRPa-4-1BBLFusionProteinDSP107" }, { - "@id": "bts:ColorectalAdenocarcinoma" + "@id": "bts:SIRPa-FcFusionProteinTTI-621" }, { - "@id": "bts:ColorectalAdenoma" + "@id": "bts:SIRPa-Fc-CD40LFusionProteinSL-172154" }, { - "@id": "bts:ColorectalCarcinoma" + "@id": "bts:SIRPa-IgG4-FcFusionProteinTTI-622" }, { - "@id": "bts:ColorectalNeoplasm" + "@id": "bts:SitimageneCeradenovec" }, { - "@id": "bts:CombinedHepatocellularCarcinomaandCholangiocarcinoma" + "@id": "bts:Sitravatinib" }, { - "@id": "bts:Craniopharyngioma" + "@id": "bts:Sivifene" }, { - "@id": "bts:CutaneousTCellLymphoma" + "@id": "bts:Sizofiran" }, { - "@id": "bts:DiffuseLargeB-CellLymphoma" + "@id": "bts:SLC6A8InhibitorRGX-202" }, { - "@id": "bts:DuctalBreastCarcinomaInSitu" + "@id": "bts:SLCTInhibitorGNS561" }, { - "@id": "bts:DysembryoplasticNeuroepithelialNeoplasm" + "@id": "bts:SMACMimeticBI891065" }, { - "@id": "bts:EndometrialCarcinoma" + "@id": "bts:SmacMimeticGDC-0152" }, { - "@id": "bts:EndometrialNeoplasm" + "@id": "bts:SmacMimeticGDC-0917" }, { - "@id": "bts:Ependymoma" + "@id": "bts:SmacMimeticLCL161" }, { - "@id": "bts:EsophagealAdenocarcinoma" + "@id": "bts:SMOProteinInhibitorZSP1602" }, { - "@id": "bts:EsophagealCarcinoma" + "@id": "bts:SmoothenedAntagonistBMS-833923" }, { - "@id": "bts:EsophagealSquamousCellCarcinoma" + "@id": "bts:SmoothenedAntagonistLDE225Topical" }, { - "@id": "bts:EwingSarcoma" + "@id": "bts:SmoothenedAntagonistLEQ506" }, { - "@id": "bts:ExtraventricularNeurocytoma" + "@id": "bts:SmoothenedAntagonistTAK-441" }, { - "@id": "bts:FibroepithelialPolyp" + "@id": "bts:SN-38-LoadedPolymericMicellesNK012" }, { - "@id": "bts:FibrolamellarCarcinoma" + "@id": "bts:SNS01-TNanoparticles" }, { - "@id": "bts:Fibrosarcoma" + "@id": "bts:Sobuzoxane" }, { - "@id": "bts:FollicularLymphoma" + "@id": "bts:SodiumBorocaptate" }, { - "@id": "bts:GallbladderCarcinoma" + "@id": "bts:SodiumButyrate" }, { - "@id": "bts:GastricAdenocarcinoma" + "@id": "bts:SodiumDichloroacetate" }, { - "@id": "bts:GastricCarcinoma" + "@id": "bts:SodiumIodideI-131" }, { - "@id": "bts:GastricNeoplasm" + "@id": "bts:SodiumMetaarsenite" }, { - "@id": "bts:GastroesophagealAdenocarcinoma" + "@id": "bts:SodiumPhenylbutyrate" }, { - "@id": "bts:GastroesophagealJunctionAdenocarcinoma" + "@id": "bts:SodiumSalicylate" }, { - "@id": "bts:GastrointestinalStromalNeoplasm" + "@id": "bts:SodiumSelenite" }, { - "@id": "bts:GiantCellTumor" + "@id": "bts:SodiumStibogluconate" }, { - "@id": "bts:Glioblastoma" + "@id": "bts:Sodium-PotassiumAdenosineTriphosphataseInhibitorRX108" }, { - "@id": "bts:Glioma" + "@id": "bts:SofituzumabVedotin" }, { - "@id": "bts:HeadandNeckCarcinoma" + "@id": "bts:Solitomab" }, { - "@id": "bts:HeadandNeckNeoplasm" + "@id": "bts:Sonepcizumab" }, { - "@id": "bts:HeadandNeckSquamousCellCarcinoma" + "@id": "bts:Sonidegib" }, { - "@id": "bts:HepatocellularCarcinoma" + "@id": "bts:Sonolisib" }, { - "@id": "bts:HighGradeOvarianSerousAdenocarcinoma" + "@id": "bts:Sorafenib" }, { - "@id": "bts:HistiocyticSarcoma" + "@id": "bts:SorafenibTosylate" }, { - "@id": "bts:HodgkinLymphoma" + "@id": "bts:SorghumbicolorSupplement" }, { - "@id": "bts:IntestinalNeoplasm" + "@id": "bts:Sotigalimab" }, { - "@id": "bts:IntrahepaticCholangiocarcinoma" + "@id": "bts:Sotorasib" }, { - "@id": "bts:InvasiveDuctalBreastCarcinoma" + "@id": "bts:Sotrastaurin" }, { - "@id": "bts:KaposiSarcoma" + "@id": "bts:SotrastaurinAcetate" }, { - "@id": "bts:Leiomyoma" + "@id": "bts:SoyIsoflavones" }, { - "@id": "bts:Leukemia" + "@id": "bts:SoyProteinIsolate" }, { - "@id": "bts:LiverandIntrahepaticBileDuctCarcinoma" + "@id": "bts:Spanlecortemlocel" }, { - "@id": "bts:LiverandIntrahepaticBileDuctNeoplasm" + "@id": "bts:SparfosateSodium" }, { - "@id": "bts:LowGradeGlioma" + "@id": "bts:SparfosicAcid" }, { - "@id": "bts:LuminalABreastCarcinoma" + "@id": "bts:Spartalizumab" }, { - "@id": "bts:LungAdenocarcinoma" + "@id": "bts:Spebrutinib" }, { - "@id": "bts:LungCarcinoma" + "@id": "bts:SphericalNucleicAcidNanoparticleNU-0129" }, { - "@id": "bts:LungNeoplasm" + "@id": "bts:Spirogermanium" }, { - "@id": "bts:LungNon-SmallCellCarcinoma" + "@id": "bts:Spiromustine" }, { - "@id": "bts:LungSmallCellCarcinoma" + "@id": "bts:Spiroplatin" }, { - "@id": "bts:LungSquamousCellCarcinoma" + "@id": "bts:SplicingInhibitorH3B-8800" }, { - "@id": "bts:LymphoidLeukemia" + "@id": "bts:Spongistatin" }, { - "@id": "bts:Lymphoma" + "@id": "bts:SqualamineLactate" }, { - "@id": "bts:MalignantBrainNeoplasm" + "@id": "bts:SR-BP1/HSIInhibitorSR31747A" }, { - "@id": "bts:MalignantDigestiveSystemNeoplasm" + "@id": "bts:SR-T100Gel" }, { - "@id": "bts:MalignantGenitourinarySystemNeoplasm" + "@id": "bts:SrcKinaseInhibitorAP23846" }, { - "@id": "bts:MalignantGlioma" + "@id": "bts:SrcKinaseInhibitorKX2-391" }, { - "@id": "bts:MalignantNeoplasm" + "@id": "bts:SrcKinaseInhibitorKX2-391Ointment" }, { - "@id": "bts:MalignantOvarianNeoplasm" + "@id": "bts:SrcKinaseInhibitorM475271" }, { - "@id": "bts:MalignantPancreaticNeoplasm" + "@id": "bts:Src/AblKinaseInhibitorAZD0424" }, { - "@id": "bts:MalignantPeripheralNerveSheathTumor" + "@id": "bts:Src/tubulinInhibitorKX02" }, { - "@id": "bts:MalignantPeritonealNeoplasm" + "@id": "bts:SRPK1/ABCG2InhibitorSCO-101" }, { - "@id": "bts:MalignantSkinNeoplasm" + "@id": "bts:SsRNA-basedImmunomodulatorCV8102" }, { - "@id": "bts:MantleCellLymphoma" + "@id": "bts:SSTR2-targetingProtein/DM1ConjugatePEN-221" }, { - "@id": "bts:MarginalZoneLymphoma" + "@id": "bts:St.John'sWort" }, { - "@id": "bts:Medulloblastoma" + "@id": "bts:Stallimycin" }, { - "@id": "bts:Melanoma" + "@id": "bts:StaphylococcalEnterotoxinA" }, { - "@id": "bts:Meningioma" + "@id": "bts:StaphylococcalEnterotoxinB" }, { - "@id": "bts:Mesothelioma" + "@id": "bts:STATInhibitorOPB-111077" }, { - "@id": "bts:MultipleMyeloma" + "@id": "bts:STAT3InhibitorDSP-0337" }, { - "@id": "bts:MycosisFungoides" + "@id": "bts:STAT3InhibitorOPB-31121" }, { - "@id": "bts:MyeloidLeukemia" + "@id": "bts:STAT3InhibitorOPB-51602" }, { - "@id": "bts:MyeloidNeoplasm" + "@id": "bts:STAT3InhibitorTTI-101" }, { - "@id": "bts:MyeloproliferativeNeoplasm" + "@id": "bts:STAT3InhibitorWP1066" }, { - "@id": "bts:Myoepithelioma" + "@id": "bts:Staurosporine" }, { - "@id": "bts:NasopharyngealCarcinoma" + "@id": "bts:STINGAgonistBMS-986301" }, { - "@id": "bts:Neuroblastoma" + "@id": "bts:STINGAgonistGSK3745417" }, { - "@id": "bts:NeuroendocrineNeoplasm" + "@id": "bts:STINGAgonistIMSA101" }, { - "@id": "bts:NeuroepithelialNeoplasm" + "@id": "bts:STINGAgonistMK-1454" }, { - "@id": "bts:Neurofibroma" + "@id": "bts:STINGAgonistSB11285" }, { - "@id": "bts:Non-FunctioningPituitaryGlandAdenoma" + "@id": "bts:STINGAgonistTAK-676" }, { - "@id": "bts:Non-HodgkinLymphoma" + "@id": "bts:STING-activatingCyclicDinucleotideAgonistMIW815" }, { - "@id": "bts:NotApplicable" + "@id": "bts:STING-expressingE.coliSYNB1891" }, { - "@id": "bts:OralCavityNeoplasm" + "@id": "bts:Streptonigrin" }, { - "@id": "bts:OralCavitySquamousCellCarcinoma" + "@id": "bts:Streptozocin" }, { - "@id": "bts:OropharyngealNeoplasm" + "@id": "bts:StrontiumChlorideSr-89" }, { - "@id": "bts:Osteosarcoma" + "@id": "bts:SubmicronParticlePaclitaxelSterileSuspension" }, { - "@id": "bts:OvarianAdenosarcoma" + "@id": "bts:Sugemalimab" }, { - "@id": "bts:OvarianCarcinoma" + "@id": "bts:Sulfatinib" }, { - "@id": "bts:OvarianNeoplasm" + "@id": "bts:Sulforaphane" }, { - "@id": "bts:OvarianSerousAdenocarcinoma" + "@id": "bts:Sulindac" }, { - "@id": "bts:Pan-cancer" + "@id": "bts:Sulofenur" }, { - "@id": "bts:PancreaticAdenocarcinoma" + "@id": "bts:SumoylationInhibitorTAK-981" }, { - "@id": "bts:PancreaticCarcinoma" + "@id": "bts:Sunitinib" }, { - "@id": "bts:PancreaticDuctalAdenocarcinoma" + "@id": "bts:SunitinibMalate" }, { - "@id": "bts:PancreaticNeoplasm" + "@id": "bts:SuperEnhancerInhibitorGZ17-6.02" }, { - "@id": "bts:PancreaticNeuroendocrineCarcinoma" + "@id": "bts:SuperagonistInterleukin-15:Interleukin-15ReceptoralphaSu/FcFusionComplexALT-803" }, { - "@id": "bts:PendingAnnotation" + "@id": "bts:SuperoxideDismutaseMimeticGC4711" }, { - "@id": "bts:PenileCarcinoma" + "@id": "bts:Suramin" }, { - "@id": "bts:Pheochromocytoma" + "@id": "bts:SuraminSodium" }, { - "@id": "bts:PilocyticAstrocytoma" + "@id": "bts:SurvivinAntigen" }, { - "@id": "bts:PituitaryGlandAdenoma" + "@id": "bts:SurvivinAntigenVaccineDPX-Survivac" }, { - "@id": "bts:PlasmablasticLymphoma" + "@id": "bts:SurvivinmRNAAntagonistEZN-3042" }, { - "@id": "bts:Plasmacytoma" + "@id": "bts:Survivin-expressingCVD908ssb-TXSVNVaccine" }, { - "@id": "bts:PlexiformSchwannoma" + "@id": "bts:Sustained-releaseLipidInhaledCisplatin" }, { - "@id": "bts:PrecursorB-celllymphoblasticleukemia" + "@id": "bts:Sustained-releaseMitomycinCHydrogelFormulationUGN-101" }, { - "@id": "bts:PrimaryCentralNervousSystemLymphoma" + "@id": "bts:Sustained-releaseMitomycinCHydrogelFormulationUGN-102" }, { - "@id": "bts:PrimaryMyelofibrosis" + "@id": "bts:SykInhibitorHMPL-523" }, { - "@id": "bts:ProstateAdenocarcinoma" + "@id": "bts:SynchrotopeTA2MPlasmidDNAVaccine" }, { - "@id": "bts:ProstateCarcinoma" + "@id": "bts:SynchrovaxSEMPlasmidDNAVaccine" }, { - "@id": "bts:ProstateNeoplasm" + "@id": "bts:SyntheticAlkaloidPM00104" }, { - "@id": "bts:RectalAdenocarcinoma" + "@id": "bts:SyntheticGlioblastomaMutatedTumor-specificPeptidesVaccineTherapyAPVAC2" }, { - "@id": "bts:RenalCellCarcinoma" + "@id": "bts:SyntheticGlioblastomaTumor-associatedPeptidesVaccineTherapyAPVAC1" }, { - "@id": "bts:Retinoblastoma" + "@id": "bts:SynthetichTERTDNAVaccineINO-1400" }, { - "@id": "bts:Rhabdomyosarcoma" + "@id": "bts:SynthetichTERTDNAVaccineINO-1401" }, { - "@id": "bts:Rosette-FormingGlioneuronalTumor" + "@id": "bts:SyntheticHypericin" }, { - "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma" + "@id": "bts:SyntheticLongE6Peptide-Toll-likeReceptorLigandConjugateVaccineISA201" }, { - "@id": "bts:Sarcoma" + "@id": "bts:SyntheticLongE6/E7PeptidesVaccineHPV-01" }, { - "@id": "bts:Schwannoma" + "@id": "bts:SyntheticLongHPV16E6/E7PeptidesVaccineISA101b" }, { - "@id": "bts:SerousTubalIntraepithelialCarcinoma" + "@id": "bts:SyntheticPlumbaginPCUR-101" }, { - "@id": "bts:SinonasalSquamousCellCarcinoma" + "@id": "bts:T900607" }, { - "@id": "bts:SkinCarcinoma" + "@id": "bts:Tabalumab" }, { - "@id": "bts:SkinNeoplasm" + "@id": "bts:Tabelecleucel" }, { - "@id": "bts:SoftTissueSarcoma" + "@id": "bts:Tacedinaline" }, { - "@id": "bts:SquamousCellCarcinoma" + "@id": "bts:Tafasitamab" }, { - "@id": "bts:SynovialSarcoma" + "@id": "bts:Tagraxofusp-erzs" }, { - "@id": "bts:TAcuteLymphoblasticLeukemia" + "@id": "bts:Talabostat" }, { - "@id": "bts:T-CellLymphoma" + "@id": "bts:TalabostatMesylate" }, { - "@id": "bts:Teratoma" + "@id": "bts:Talacotuzumab" }, { - "@id": "bts:TesticularEmbryonalCarcinoma" + "@id": "bts:TalactoferrinAlfa" }, { - "@id": "bts:ThyroidGlandAnaplasticCarcinoma" + "@id": "bts:Taladegib" }, { - "@id": "bts:ThyroidGlandCarcinoma" + "@id": "bts:Talampanel" }, { - "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures" + "@id": "bts:TalaporfinSodium" }, { - "@id": "bts:Triple-NegativeBreastCarcinoma" + "@id": "bts:Talazoparib" }, { - "@id": "bts:UrothelialCarcinoma" + "@id": "bts:Taletrectinib" }, { - "@id": "bts:UterineAdenosarcoma" + "@id": "bts:TalimogeneLaherparepvec" }, { - "@id": "bts:UvealMelanoma" + "@id": "bts:Tallimustine" }, { - "@id": "bts:UvealNeoplasm" + "@id": "bts:Talmapimod" }, { - "@id": "bts:VascularNeoplasm" + "@id": "bts:Talotrexin" }, { - "@id": "bts:Not-Applicable" + "@id": "bts:TalotrexinAmmonium" }, { - "@id": "bts:PlexiformNeurofibroma" - } - ], - "sms:displayName": "Publication Tumor Type", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:PublicationTissue", - "@type": "rdfs:Class", - "rdfs:comment": "Tissue type(s) associated with the publication. Multiple values permitted, comma separated.", - "rdfs:label": "PublicationTissue", - "rdfs:subClassOf": [ + "@id": "bts:Taltobulin" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:TAM/c-MetInhibitorRXDX-106" + }, { - "@id": "bts:Gonad" + "@id": "bts:Tamibarotene" }, { - "@id": "bts:AbdominalEsophagus" + "@id": "bts:Taminadenant" }, { - "@id": "bts:AdiposeTissue" + "@id": "bts:Tamoxifen" }, { - "@id": "bts:AdrenalGland" + "@id": "bts:TamoxifenCitrate" }, { - "@id": "bts:Alveolus" + "@id": "bts:TamrintamabPamozirine" }, { - "@id": "bts:Aorta" + "@id": "bts:Tandutinib" }, { - "@id": "bts:Artery" + "@id": "bts:Tanespimycin" }, { - "@id": "bts:AscendingColon" + "@id": "bts:Tanibirumab" }, { - "@id": "bts:BileDuct" + "@id": "bts:TankyraseInhibitorSTP1002" }, { - "@id": "bts:Bladder" + "@id": "bts:Tanomastat" }, { - "@id": "bts:Blood" + "@id": "bts:Tapotoclax" }, { - "@id": "bts:BloodVessel" + "@id": "bts:Tarenflurbil" }, { - 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Multiple values permitted, comma separated.", + "rdfs:label": "AlternativeNames", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "EST", + "sms:displayName": "Alternative Names", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:FAIRE-seq", + "@id": "bts:Email", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "FAIRE-seq", + "rdfs:comment": "Email address of the individual", + "rdfs:label": "Email", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "FAIRE-seq", + "sms:displayName": "Email", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:FINISHING", + "@id": "bts:Url", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "FINISHING", + "rdfs:comment": "URL, e.g., individual's home page address", + "rdfs:label": "Url", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "FINISHING", + "sms:displayName": "Url", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:FL-cDNA", + "@id": "bts:OrcidId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "FL-cDNA", + "rdfs:comment": "Unique identifier (ORCID ID) of the individual", + "rdfs:label": "OrcidId", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "FL-cDNA", + "sms:displayName": "Orcid Id", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "regex search \\d{4}\\-\\d{4}\\-\\d{4}\\-\\d{3}(\\d|X)" + ] }, { - "@id": "bts:MBD-Seq", + "@id": "bts:SynapseProfileId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MBD-Seq", + "rdfs:comment": "Unique identifier (Synapse Profile ID) of the individual. See identifer in the url of the synapse profile page.", + "rdfs:label": "SynapseProfileId", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MBD-Seq", + "sms:displayName": "Synapse Profile Id", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:MeDIP-Seq", + "@id": "bts:LastKnownInstitution", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MeDIP-Seq", + "rdfs:comment": "Last known institutional affiliation of the individual.", + "rdfs:label": "LastKnownInstitution", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MeDIP-Seq", - "sms:required": "sms:false", + "sms:displayName": "Last Known Institution", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:MiRNA-Seq", + "@id": "bts:WorkingGroupParticipation", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MiRNA-Seq", + "rdfs:comment": "CSBC/PSON working group(s) of which the individual is a member (current and former). Multiple values permitted, comma separated.", + "rdfs:label": "WorkingGroupParticipation", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "miRNA-Seq", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MRE-Seq", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MRE-Seq", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:NGSLibraryStrategy" + "@id": "bts:CancerMetabolism" + }, + { + "@id": "bts:CellandTissueMechanics" + }, + { + "@id": "bts:EducationandOutreach" + }, + { + "@id": "bts:ImageAnalysis" + }, + { + "@id": "bts:NavigatingCancerwithScienceandArt" + }, + { + "@id": "bts:None" + }, + { + "@id": "bts:PatientAdvocacyWorkingGroup" + }, + { + "@id": "bts:Protein-ProteinInteractions" + }, + { + "@id": "bts:ResourceandDataSharing" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MRE-Seq", - 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Multiple values permitted, comma separated.", + "rdfs:label": "PersonPublications", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synthetic", + "sms:displayName": "Person Publications", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Transcriptomic", + "@id": "bts:PersonDatasets", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Transcriptomic", + "rdfs:comment": "A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonDatasets", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transcriptomic", + "sms:displayName": "Person Datasets", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:TranscriptomicSingleCell", + "@id": "bts:PersonTools", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TranscriptomicSingleCell", + "rdfs:comment": "A list of the tool names associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonTools", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transcriptomic Single Cell", + "sms:displayName": "Person Tools", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:ViralRNA", + "@id": "bts:PersonEducationalResources", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ViralRNA", + "rdfs:comment": "A list of educational resource identifiers associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonEducationalResources", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Viral RNA", + "sms:displayName": "Person Educational Resources", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Paired-end", + "@id": "bts:PersonGrantNumber", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Paired-end", + "rdfs:comment": "Grant number(s) associated with the person. Multiple values permitted, comma separated.", + "rdfs:label": "PersonGrantNumber", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibraryLayout" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Paired-end", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Single-indexed", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Single-indexed", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ + { + "@id": "bts:Affiliated/Non-GrantAssociated" + }, + { + "@id": "bts:CA184897" + }, + { + "@id": "bts:CA184898" + }, + { + "@id": "bts:CA188388" + }, + { + "@id": "bts:CA193313" + }, + { + "@id": "bts:CA193417" + }, + { + "@id": "bts:CA193419" + }, + { + "@id": "bts:CA193461" + }, + { + "@id": "bts:CA193489" + }, + { + "@id": "bts:CA195469" + }, + { + "@id": "bts:CA199315" + }, + { + "@id": "bts:CA202123" + }, + { + "@id": "bts:CA202144" + }, + { + "@id": "bts:CA202177" + }, + { + "@id": 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"rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", - "rdfs:label": "SequencingLevel2Id", - "rdfs:subClassOf": [ + "@id": "bts:TranscriptionprofilingbyNanoString" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel2_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:SequencingLevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:AlcianBlueStainingMethod" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel1 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel1.SequencingLevel1_id Value" - ] - }, - { - "@id": "bts:NGSStitchedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads", - "rdfs:label": "NGSStitchedReads", - "rdfs:subClassOf": [ + "@id": "bts:ArtificialIntelligence" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Stitched Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSAlignedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.", - "rdfs:label": "NGSAlignedReads", - "rdfs:subClassOf": [ + "@id": "bts:CellCulture" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Aligned Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSDeduplicatedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Is the replacement of blocks of duplicate data with a Virtual Index Pointer linking the new sub-block to the existing block of data in a duplicate repository. This is used to reduce the amount of space need to store the data.", - "rdfs:label": "NGSDeduplicatedReads", - "rdfs:subClassOf": [ + "@id": "bts:ClinicalStudy" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Deduplicated Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSTrimmedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Number of the reads remaining after trimming has been applied.", - "rdfs:label": "NGSTrimmedReads", - "rdfs:subClassOf": [ + "@id": "bts:Cell-freeCirculatingTumorDNAAssay" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Trimmed Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GenomicReference", - "@type": "rdfs:Class", - "rdfs:comment": "Exact version of the human genome reference used in the alignment of reads (e.g. GCF_000001405.39)", - "rdfs:label": "GenomicReference", - "rdfs:subClassOf": [ + "@id": "bts:Co-ImmunoprecipitationMassSpectrometry" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic Reference", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:SequencingLevel3", - "@type": "rdfs:Class", - "rdfs:comment": "Sequencing data that has been aligned with a reference genome.", - "rdfs:label": "SequencingLevel3", - "rdfs:subClassOf": [ + "@id": "bts:DeepLearning" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sequencing Level 3", - "sms:required": "sms:false", - "sms:requiresDependency": [ + "@id": "bts:GeneOntologyEnrichmentAnalysis" + }, { - "@id": "bts:Component" + "@id": "bts:GeneSetEnrichmentAnalysis" }, { - "@id": "bts:SequencingLevel3Id" + "@id": "bts:GeneSilencing" }, { - "@id": "bts:SequencingLevel2Key" + "@id": "bts:HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture" }, { - "@id": "bts:Filename" + "@id": "bts:ImagingMassCytometry" }, { - "@id": "bts:NGSUniqueProbeCount" + "@id": "bts:ImmunofluorescentStainingMethod" }, { - "@id": "bts:NGSUniqueTargetCount" + "@id": "bts:Immunotherapy" }, { - "@id": "bts:NGSMatrixType" + "@id": "bts:ViralTransduction" }, { - "@id": "bts:SoftwareandVersion" + "@id": "bts:MetastaticColonizationAssay" }, { - "@id": "bts:WorkflowType" + "@id": "bts:PhylogeneticAnalysis" }, { - "@id": "bts:WorkflowParameterDescription" + "@id": "bts:PicrosiriusStaining" }, { - "@id": "bts:WorkflowLink" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingLevel3Id", - "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", - "rdfs:label": "SequencingLevel3Id", - "rdfs:subClassOf": [ + "@id": "bts:ScratchAssay" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel3_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:SequencingLevel2Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel2Key", - "rdfs:subClassOf": [ + "@id": "bts:StructuralVariantAnalysis" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel2 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel2.SequencingLevel2_id Value" - ] - }, - { - "@id": "bts:NGSUniqueProbeCount", - "@type": "rdfs:Class", - "rdfs:comment": "Total number of unique probes reported.", - "rdfs:label": "NGSUniqueProbeCount", - "rdfs:subClassOf": [ + "@id": "bts:SurvivalAnalysis" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Unique Probe Count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSUniqueTargetCount", - "@type": "rdfs:Class", - "rdfs:comment": "Total number of unique genes reported.", - "rdfs:label": "NGSUniqueTargetCount", - "rdfs:subClassOf": [ + "@id": "bts:TargetedErrorCorrectionSequencing" + }, { - "@id": "bts:Thing" + "@id": "bts:Tuba-Seq" + }, + { + "@id": "bts:SDS-PAGE" + }, + { + "@id": "bts:CellFractionation" + }, + { + "@id": "bts:MultiscaleLightSheetMicroscopy" + }, + { + "@id": "bts:LightSheetMicroscopy" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Unique Target Count", - "sms:required": "sms:false", + "sms:displayName": "Publication Assay", + "sms:required": "sms:true", "sms:validationRules": [ - "num" + "list like" ] }, { - "@id": "bts:NGSMatrixType", + "@id": "bts:PublicationTumorType", "@type": "rdfs:Class", - "rdfs:comment": "Type of count data stored in matrix.", - "rdfs:label": "NGSMatrixType", + "rdfs:comment": "Tumor type(s) associated with the publication. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationTumorType", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -311956,1735 +317109,575 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:RawCounts" + "@id": "bts:CutaneousMelanoma" }, { - "@id": "bts:NormalizedCounts" + "@id": "bts:AcinarCellCarcinoma" }, { - "@id": "bts:ScaledCounts" + "@id": "bts:AcuteLymphoblasticLeukemia" }, { - "@id": "bts:BatchCorrectedCounts" - } - ], - "sms:displayName": "NGS Matrix Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkflowType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of computational workflow used to generate the file.", - "rdfs:label": "WorkflowType", - "rdfs:subClassOf": [ + "@id": "bts:AcuteMonocyticLeukemia" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Type", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:WorkflowParameterDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Link or text description of flags or options provided to the workflow used to generate the file.", - "rdfs:label": "WorkflowParameterDescription", - "rdfs:subClassOf": [ + "@id": "bts:AcuteMyeloidLeukemia" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Parameter Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:WorkflowLink", - "@type": "rdfs:Class", - "rdfs:comment": "Link to documentation or webpage associated with the computational workflow used to generate the file.", - "rdfs:label": "WorkflowLink", - "rdfs:subClassOf": [ + "@id": "bts:AcutePromyelocyticLeukemia" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Link", - "sms:required": "sms:false", - "sms:validationRules": [ - "url" - ] - }, - { - "@id": "bts:RawCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RawCounts", - "rdfs:subClassOf": [ + "@id": "bts:Adenocarcinoma" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Raw Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NormalizedCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NormalizedCounts", - "rdfs:subClassOf": [ + "@id": "bts:Angiosarcoma" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Normalized Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ScaledCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ScaledCounts", - "rdfs:subClassOf": [ + "@id": "bts:Astrocytoma" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Scaled Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:BatchCorrectedCounts", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "BatchCorrectedCounts", - "rdfs:subClassOf": [ + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" + }, { - "@id": "bts:NGSMatrixType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Batch Corrected Counts", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingRNALevel1", - "@type": "rdfs:Class", - "rdfs:comment": "Unaligned/unprocessed RNA sequencing data", - "rdfs:label": "SequencingRNALevel1", - "rdfs:subClassOf": [ + "@id": "bts:BAcuteLymphoblasticLeukemia" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sequencing RNA Level 1", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:B-CellNon-HodgkinLymphoma" + }, { - "@id": "bts:SequencingLevel1" - } - ], - "sms:requiresDependency": [ + "@id": "bts:BarrettEsophagus" + }, { - "@id": "bts:Component" + "@id": "bts:BasalCellNeoplasm" }, { - "@id": "bts:SequencingRNALevel1Id" + "@id": "bts:Basal-LikeBreastCarcinoma" }, { - "@id": "bts:Filename" + "@id": "bts:BiliaryTractCarcinoma" }, { - "@id": "bts:NGSRNAEndBias" + "@id": "bts:BladderCarcinoma" }, { - "@id": "bts:NGSRNAReverseTranscriptionPrimer" + "@id": "bts:BladderNeoplasm" }, { - "@id": "bts:NGSRNARIN" + "@id": "bts:BoneNeoplasm" }, { - "@id": "bts:NGSRNADV200" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingRNALevel1Id", - "@type": "rdfs:Class", - "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", - "rdfs:label": "SequencingRNALevel1Id", - "rdfs:subClassOf": [ + "@id": "bts:BrainNeoplasm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingRNALevel1_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:NGSRNAEndBias", - "@type": "rdfs:Class", - "rdfs:comment": "The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript", - "rdfs:label": "NGSRNAEndBias", - "rdfs:subClassOf": [ + "@id": "bts:BreastAdenocarcinoma" + }, + { + "@id": "bts:BreastCarcinoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:BreastNeoplasm" + }, { - "@id": "bts:3Prime" + "@id": "bts:Carcinoma" }, { - "@id": "bts:5Prime" + "@id": "bts:CarcinomaInSitu" }, { - "@id": "bts:FullLengthTranscript" - } - ], - "sms:displayName": "NGS RNA End Bias", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSRNAReverseTranscriptionPrimer", - "@type": "rdfs:Class", - "rdfs:comment": "An oligo to which new deoxyribonucleotides can be added by DNA polymerase [SO_0000112]. The type of primer used for reverse transcription, e.g. oligo-dT or random primer. This allows users to identify content of the cDNA library input e.g. enriched for mRNA", - "rdfs:label": "NGSRNAReverseTranscriptionPrimer", - "rdfs:subClassOf": [ + "@id": "bts:Castration-ResistantProstateCarcinoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:CellularSchwannoma" + }, { - "@id": "bts:Oligo-dT" + "@id": "bts:CentralNervousSystemCavernousHemangioma" }, { - "@id": "bts:Poly-dT" + "@id": "bts:CentralNervousSystemNeoplasm" }, { - "@id": "bts:Featurebarcoding" + "@id": "bts:CerebellarNeoplasm" }, { - "@id": "bts:Random" - } - ], - "sms:displayName": "NGS RNA Reverse Transcription Primer", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSRNARIN", - "@type": "rdfs:Class", - "rdfs:comment": "A numerical assessment of the integrity of RNA based on the entire electrophoretic trace of the RNA sample including the presence or absence of degradation products. Number", - "rdfs:label": "NGSRNARIN", - "rdfs:subClassOf": [ + "@id": "bts:CervicalCarcinoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS RNA RIN", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSRNADV200", - "@type": "rdfs:Class", - "rdfs:comment": "Represents the percentage of RNA fragments that are >200 nucleotides in size. Number", - "rdfs:label": "NGSRNADV200", - "rdfs:subClassOf": [ + "@id": "bts:CervicalNeoplasm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS RNA DV200", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:3Prime", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "3Prime", - "rdfs:subClassOf": [ + "@id": "bts:CervicalSmallCellCarcinoma" + }, { - "@id": "bts:NGSRNAEndBias" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "3 Prime", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:5Prime", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "5Prime", - "rdfs:subClassOf": [ + "@id": "bts:Cholangiocarcinoma" + }, { - "@id": "bts:NGSRNAEndBias" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "5 Prime", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FullLengthTranscript", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "FullLengthTranscript", - "rdfs:subClassOf": [ + "@id": "bts:Chondroblastoma" + }, { - "@id": "bts:NGSRNAEndBias" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Full Length Transcript", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Poly-dT", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Poly-dT", - "rdfs:subClassOf": [ + "@id": "bts:Choriocarcinoma" + }, { - "@id": "bts:NGSRNAReverseTranscriptionPrimer" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Poly-dT", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Featurebarcoding", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Featurebarcoding", - "rdfs:subClassOf": [ + "@id": "bts:ChronicLymphocyticLeukemia" + }, { - "@id": "bts:NGSRNAReverseTranscriptionPrimer" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Feature barcoding", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Shared", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Shared", - "rdfs:subClassOf": [ + "@id": "bts:ChronicMyeloidLeukemia" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "shared", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IRB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IRB", - "rdfs:subClassOf": [ + "@id": "bts:ClearCellRenalCellCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:ColonAdenocarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:ColonCarcinoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "IRB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:HMB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "HMB", - "rdfs:subClassOf": [ + "@id": "bts:ColorectalAdenocarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:ColorectalAdenoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:ColorectalCarcinoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "HMB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PUB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PUB", - "rdfs:subClassOf": [ + "@id": "bts:ColorectalNeoplasm" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:CombinedHepatocellularCarcinomaandCholangiocarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Craniopharyngioma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PUB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:US", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "US", - "rdfs:subClassOf": [ + "@id": "bts:CutaneousTCellLymphoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:DiffuseLargeB-CellLymphoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:DuctalBreastCarcinomaInSitu" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:DysembryoplasticNeuroepithelialNeoplasm" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "US", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPOA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPOA", - "rdfs:subClassOf": [ + "@id": "bts:EndometrialCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:EndometrialNeoplasm" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Ependymoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPOA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:COL", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "COL", - "rdfs:subClassOf": [ + "@id": "bts:EsophagealAdenocarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:EsophagealCarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:EsophagealSquamousCellCarcinoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "COL", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NCU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NCU", - "rdfs:subClassOf": [ + "@id": "bts:EwingSarcoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:ExtraventricularNeurocytoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:FibroepithelialPolyp" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NCU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPUNCU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPUNCU", - "rdfs:subClassOf": [ + "@id": "bts:FibrolamellarCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Fibrosarcoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:FollicularLymphoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPUNCU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RS", - "rdfs:subClassOf": [ + "@id": "bts:GallbladderCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:GastricAdenocarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:GastricCarcinoma" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:GastricNeoplasm" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TS", - "rdfs:subClassOf": [ + "@id": "bts:GastroesophagealAdenocarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:GastroesophagealJunctionAdenocarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:GastrointestinalStromalNeoplasm" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NRES", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NRES", - "rdfs:subClassOf": [ + "@id": "bts:GiantCellTumor" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Glioblastoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Glioma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NRES", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPU", - "rdfs:subClassOf": [ + "@id": "bts:HeadandNeckCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:HeadandNeckNeoplasm" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:HeadandNeckSquamousCellCarcinoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DUM", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DUM", - "rdfs:subClassOf": [ + "@id": "bts:HepatocellularCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:HighGradeOvarianSerousAdenocarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:HistiocyticSarcoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DUM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:POA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "POA", - "rdfs:subClassOf": [ + "@id": "bts:HodgkinLymphoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:IntestinalNeoplasm" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:IntrahepaticCholangiocarcinoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "POA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MOR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MOR", - "rdfs:subClassOf": [ + "@id": "bts:InvasiveDuctalBreastCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:KaposiSarcoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Leiomyoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MOR", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GSO", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GSO", - "rdfs:subClassOf": [ + "@id": "bts:Leukemia" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:LiverandIntrahepaticBileDuctCarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:LiverandIntrahepaticBileDuctNeoplasm" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GSO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RTN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RTN", - "rdfs:subClassOf": [ + "@id": "bts:LowGradeGlioma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:LuminalABreastCarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:LungAdenocarcinoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RTN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CC", - "rdfs:subClassOf": [ + "@id": "bts:LungCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:LungNeoplasm" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:LungNon-SmallCellCarcinoma" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:LungSmallCellCarcinoma" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "CC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NMDS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NMDS", - "rdfs:subClassOf": [ + "@id": "bts:LungSquamousCellCarcinoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:LymphoidLeukemia" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Lymphoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NMDS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IS", - "rdfs:subClassOf": [ + "@id": "bts:MalignantBrainNeoplasm" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:MalignantDigestiveSystemNeoplasm" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:MalignantGenitourinarySystemNeoplasm" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:MalignantGlioma" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "IS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GS", - "rdfs:subClassOf": [ + "@id": "bts:MalignantNeoplasm" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:MalignantOvarianNeoplasm" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:MalignantPancreaticNeoplasm" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:MalignantPeripheralNerveSheathTumor" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DS", - "rdfs:subClassOf": [ + "@id": "bts:MalignantPeritonealNeoplasm" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:MalignantSkinNeoplasm" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:MantleCellLymphoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GRU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GRU", - "rdfs:subClassOf": [ + "@id": "bts:MarginalZoneLymphoma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Medulloblastoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:Melanoma" }, { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GRU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PS", - "rdfs:subClassOf": [ + "@id": "bts:Meningioma" + }, { - "@id": "bts:DataUseCodes" + "@id": "bts:Mesothelioma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:MultipleMyeloma" }, { - "@id": "bts:StudyDataUseCodes" + "@id": "bts:MycosisFungoides" }, { - "@id": "bts:ToolInputFormat" + "@id": "bts:MyeloidLeukemia" }, { - "@id": "bts:ToolOutputFormat" + "@id": "bts:MyeloidNeoplasm" }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ProjectViewKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ProjectView_id foreign key(s) that group the resource with other components, as part of the same grant-associated studies. Please provide multiple values as a comma-separated list.", - "rdfs:label": "ProjectViewKey", - "rdfs:subClassOf": [ + "@id": "bts:MyeloproliferativeNeoplasm" + }, { - "@id": "bts:Project" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ProjectView Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ProjectView.ProjectView_id Value" - ] - }, - { - "@id": "bts:PersonViewKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique PersonView_id foreign key(s) that group the resource with other components, as part of the same person-associated studies. Please provide multiple values as a comma-separated list.", - "rdfs:label": "PersonViewKey", - "rdfs:subClassOf": [ + "@id": "bts:Myoepithelioma" + }, { - "@id": "bts:Person" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PersonView Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne PersonView.PersonView_id Value" - ] - }, - { - "@id": "bts:Person", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Person", - "rdfs:subClassOf": [ + "@id": "bts:NasopharyngealCarcinoma" + }, { - "@id": "bts:ToolEntityType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Person", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConsortiumKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique Consortium_id foreign key(s) that group the resource with other components, as part of the same consortium-associated grants. Please provide multiple values as a comma-separated list.", - "rdfs:label": "ConsortiumKey", - "rdfs:subClassOf": [ + "@id": "bts:Neuroblastoma" + }, { - "@id": "bts:Consortium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Consortium Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne Consortium.Consortium_id Value" - ] - }, - { - "@id": "bts:Grant", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Grant", - "rdfs:subClassOf": [ + "@id": "bts:NeuroendocrineNeoplasm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "grant", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Dataset", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Dataset", - "rdfs:subClassOf": [ + "@id": "bts:NeuroepithelialNeoplasm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "dataset", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Publication", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Publication", - "rdfs:subClassOf": [ + "@id": "bts:Neurofibroma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "publication", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tool", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tool", - "rdfs:subClassOf": [ + "@id": "bts:Non-FunctioningPituitaryGlandAdenoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "tool", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Education", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Education", - "rdfs:subClassOf": [ + "@id": "bts:Non-HodgkinLymphoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "education", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DataDSPKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique DataDSP_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.", - "rdfs:label": "DataDSPKey", - "rdfs:subClassOf": [ + "@id": "bts:NotApplicable" + }, { - "@id": "bts:SharingPlans" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DataDSP Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne DataDSP.DataDSP_id Value" - ] - }, - { - "@id": "bts:SharingPlans", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SharingPlans", - "rdfs:subClassOf": [ + "@id": "bts:OralCavityNeoplasm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sharingPlans", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:FileViewKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique FileView_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "FileViewKey", - "rdfs:subClassOf": [ + "@id": "bts:OralCavitySquamousCellCarcinoma" + }, { - "@id": "bts:File" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "FileView Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne FileView.FileView_id Value" - ] - }, - { - "@id": "bts:File", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "File", - "rdfs:subClassOf": [ + "@id": "bts:OropharyngealNeoplasm" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "file", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Geomx", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Geomx", - "rdfs:subClassOf": [ + "@id": "bts:Osteosarcoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "geomx", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxDSPImagingKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPImaging_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPImagingKey", - "rdfs:subClassOf": [ + "@id": "bts:OvarianAdenosarcoma" + }, + { + "@id": "bts:OvarianCarcinoma" + }, + { + "@id": "bts:OvarianNeoplasm" + }, + { + "@id": "bts:OvarianSerousAdenocarcinoma" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPImaging Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPImaging.NanoStringGeoMxDSPImaging_id Value" - ] - }, - { - "@id": "bts:NanoStringGeoMxDSPLevel3Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel3Key", - "rdfs:subClassOf": [ + "@id": "bts:Pan-cancer" + }, { - "@id": "bts:Geomx" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxDSPLevel3 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne NanoStringGeoMxDSPLevel3.NanoStringGeoMxDSPLevel3_id Value" - ] - }, - { - "@id": "bts:ImagingLevel4Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingLevel4Key", - "rdfs:subClassOf": [ + "@id": "bts:PancreaticAdenocarcinoma" + }, { - "@id": "bts:Imaging" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ImagingLevel4 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne ImagingLevel4.ImagingLevel4_id Value" - ] - }, - { - "@id": "bts:Sequencing", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sequencing", - "rdfs:subClassOf": [ + "@id": "bts:PancreaticCarcinoma" + }, { - "@id": "bts:ToolTopic" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Sequencing", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SequencingLevel3Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel3Key", - "rdfs:subClassOf": [ + "@id": "bts:PancreaticDuctalAdenocarcinoma" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel3 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel3.SequencingLevel3_id Value" - ] - }, - { - "@id": "bts:SequencingLevel4Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingLevel4Key", - "rdfs:subClassOf": [ + "@id": "bts:PancreaticNeoplasm" + }, { - "@id": "bts:Sequencing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingLevel4 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingLevel4.SequencingLevel4_id Value" - ] - }, - { - "@id": "bts:SequencingRNALevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique SequencingRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "SequencingRNALevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:PancreaticNeuroendocrineCarcinoma" + }, { - "@id": "bts:SequencingRNA" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SequencingRNALevel1 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne SequencingRNALevel1.SequencingRNALevel1_id Value" - ] - }, - { - "@id": "bts:SequencingRNA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SequencingRNA", - "rdfs:subClassOf": [ + "@id": "bts:PendingAnnotation" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "sequencing RNA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:10xVisiumRNALevel1Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel1Key", - "rdfs:subClassOf": [ + "@id": "bts:PenileCarcinoma" + }, { - "@id": "bts:Visium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "10xVisiumRNALevel1 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel1.10xVisiumRNALevel1_id Value" - ] - }, - { - "@id": "bts:Visium", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Visium", - "rdfs:subClassOf": [ + "@id": "bts:Pheochromocytoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "visium", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:10xVisiumRNALevel2Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel2Key", - "rdfs:subClassOf": [ + "@id": "bts:PilocyticAstrocytoma" + }, { - "@id": "bts:Visium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "10xVisiumRNALevel2 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel2.10xVisiumRNALevel2_id Value" - ] - }, - { - "@id": "bts:10xVisiumRNALevel3Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel3Key", - "rdfs:subClassOf": [ + "@id": "bts:PituitaryGlandAdenoma" + }, { - "@id": "bts:Visium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "10xVisiumRNALevel3 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel3.10xVisiumRNALevel3_id Value" - ] - }, - { - "@id": "bts:10xVisiumRNALevel4Key", - "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumRNALevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumRNALevel4Key", - "rdfs:subClassOf": [ + "@id": "bts:PlasmablasticLymphoma" + }, { - "@id": "bts:Visium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "10xVisiumRNALevel4 Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumRNALevel4.10xVisiumRNALevel4_id Value" - ] - }, - { - "@id": "bts:10xVisiumAuxiliaryFilesKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique 10xVisiumAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "10xVisiumAuxiliaryFilesKey", - "rdfs:subClassOf": [ + "@id": "bts:Plasmacytoma" + }, { - "@id": "bts:Visium" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "10xVisiumAuxiliaryFiles Key", - "sms:required": "sms:false", - "sms:validationRules": [ - "matchAtLeastOne 10xVisiumAuxiliaryFiles.10xVisiumAuxiliaryFiles_id Value" - ] - }, - { - "@id": "bts:WorkflowVersion", - "@type": "rdfs:Class", - "rdfs:comment": "Major version of the workflow (e.g. Cell Ranger v3.1)", - "rdfs:label": "WorkflowVersion", - "rdfs:subClassOf": [ + "@id": "bts:PlexiformSchwannoma" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Version", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:GenomicReferenceURL", - "@type": "rdfs:Class", - "rdfs:comment": "Link to human genome sequence; ftp or reference URL will be accepted.", - "rdfs:label": "GenomicReferenceURL", - "rdfs:subClassOf": [ + "@id": "bts:PrecursorB-celllymphoblasticleukemia" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic Reference URL", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] - }, - { - "@id": "bts:GenomeAnnotationURL", - "@type": "rdfs:Class", - "rdfs:comment": "Link to the human genome annotation (GTF) file; ftp or reference URL will be accepted.", - "rdfs:label": "GenomeAnnotationURL", - "rdfs:subClassOf": [ + "@id": "bts:PrimaryCentralNervousSystemLymphoma" + }, { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genome Annotation URL", - "sms:required": "sms:true", - "sms:validationRules": [ - "url" - ] - }, - { - "@id": "bts:DataDSP", - "@type": "rdfs:Class", - "rdfs:comment": "Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.", - "rdfs:label": "DataDSP", - "rdfs:subClassOf": [ + "@id": "bts:PrimaryMyelofibrosis" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DataDSP", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "@id": "bts:ProstateAdenocarcinoma" + }, { - "@id": "bts:Study" - } - ], - "sms:requiresDependency": [ + "@id": "bts:ProstateCarcinoma" + }, { - "@id": "bts:Component" + "@id": "bts:ProstateNeoplasm" }, { - "@id": "bts:DataDSPId" + "@id": "bts:RectalAdenocarcinoma" }, { - "@id": "bts:GrantViewKey" + "@id": "bts:RenalCellCarcinoma" }, { - "@id": "bts:StudyKey" + "@id": "bts:Retinoblastoma" }, { - "@id": "bts:DatasetViewKey" + "@id": "bts:Rhabdomyosarcoma" }, { - "@id": "bts:DSPDatasetAlias" + "@id": "bts:Rosette-FormingGlioneuronalTumor" }, { - "@id": "bts:DSPDatasetName" + "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma" }, { - "@id": "bts:DSPDatasetUrl" + "@id": "bts:Sarcoma" }, { - "@id": "bts:DSPDatasetAssay" + "@id": "bts:Schwannoma" }, { - "@id": "bts:DSPDatasetLevel" + "@id": "bts:SerousTubalIntraepithelialCarcinoma" }, { - "@id": "bts:DSPDatasetSpecies" + "@id": "bts:SinonasalSquamousCellCarcinoma" }, { - "@id": "bts:DSPDatasetTumorType" + "@id": "bts:SkinCarcinoma" }, { - "@id": "bts:DSPDatasetTissue" + "@id": "bts:SkinNeoplasm" }, { - "@id": "bts:DSPDatasetFileFormats" + "@id": "bts:SoftTissueSarcoma" }, { - "@id": "bts:DSPNumberofFiles" + "@id": "bts:SquamousCellCarcinoma" }, { - "@id": "bts:DSPNumberofSamples" + "@id": "bts:SynovialSarcoma" }, { - "@id": "bts:DSPNumberofParticipants" + "@id": "bts:TAcuteLymphoblasticLeukemia" }, { - "@id": "bts:DSPStorageSize" + "@id": "bts:T-CellLymphoma" }, { - "@id": "bts:DSPDatasetDescription" + "@id": "bts:Teratoma" }, { - "@id": "bts:DSPPlannedUploadDate" + "@id": "bts:TesticularEmbryonalCarcinoma" }, { - "@id": "bts:DSPPlannedReleaseDate" + "@id": "bts:ThyroidGlandAnaplasticCarcinoma" }, { - "@id": "bts:DSPDataUseCodes" + "@id": "bts:ThyroidGlandCarcinoma" }, { - "@id": "bts:DSPIRBForm" + "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures" }, { - "@id": "bts:DSPDatasetDestination" + "@id": "bts:Triple-NegativeBreastCarcinoma" }, { - "@id": "bts:DSPDatasetMetadata" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:DataDSPId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "DataDSPId", - "rdfs:subClassOf": [ + "@id": "bts:UrothelialCarcinoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DataDSP_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:DSPDatasetAlias", - "@type": "rdfs:Class", - "rdfs:comment": "Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.", - "rdfs:label": "DSPDatasetAlias", - "rdfs:subClassOf": [ + "@id": "bts:UterineAdenosarcoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Alias", - "sms:required": "sms:false", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:DSPDatasetName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of the dataset", - "rdfs:label": "DSPDatasetName", - "rdfs:subClassOf": [ + "@id": "bts:UvealMelanoma" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:DSPDatasetUrl", - "@type": "rdfs:Class", - "rdfs:comment": "The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.", - "rdfs:label": "DSPDatasetUrl", - "rdfs:subClassOf": [ + "@id": "bts:UvealNeoplasm" + }, { - "@id": "bts:Thing" + "@id": "bts:VascularNeoplasm" + }, + { + "@id": "bts:Not-Applicable" + }, + { + "@id": "bts:PlexiformNeurofibroma" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Url", - "sms:required": "sms:false", + "sms:displayName": "Publication Tumor Type", + "sms:required": "sms:true", "sms:validationRules": [ - "url" + "list like" ] }, { - "@id": "bts:DSPDatasetAssay", + "@id": "bts:PublicationTissue", "@type": "rdfs:Class", - "rdfs:comment": "The type of data contained in this group of files. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetAssay", + "rdfs:comment": "Tissue type(s) associated with the publication. Multiple values permitted, comma separated.", + "rdfs:label": "PublicationTissue", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -313695,2249 +317688,4886 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:10-cellRNASequencing" - }, - { - "@id": "bts:16SRibosomalGeneSequencingAssay" - }, - { - "@id": "bts:3'RNA-seq" + "@id": "bts:Gonad" }, { - "@id": "bts:3C" + "@id": "bts:AbdominalEsophagus" }, { - "@id": "bts:3C-qPCR" + "@id": "bts:AdiposeTissue" }, { - "@id": "bts:3DATAC-PALM" + "@id": "bts:AdrenalGland" }, { - "@id": "bts:3DBioprinting" + "@id": "bts:Alveolus" }, { - "@id": "bts:3DCellCulture" + "@id": "bts:Aorta" }, { - "@id": "bts:4C" + "@id": "bts:Artery" }, { - "@id": "bts:5C" + "@id": "bts:AscendingColon" }, { - "@id": "bts:ATAC-Seq" + "@id": "bts:BileDuct" }, { - "@id": "bts:ATPBioluminescenceAssay" + "@id": "bts:Bladder" }, { - "@id": "bts:AffinityPurificationMassSpectrometry" + "@id": "bts:Blood" }, { - "@id": "bts:Allograft" + "@id": "bts:BloodVessel" }, { - "@id": "bts:AmpliconSequencing" + "@id": "bts:Bone" }, { - "@id": "bts:AngiogenesisAssay" + "@id": "bts:BoneMarrow" }, { - "@id": "bts:ApoptosisAssay" + "@id": "bts:Brain" }, { - "@id": "bts:AtomicAbsorptionSpectrophotometry" + "@id": "bts:Breast" }, { - "@id": "bts:AtomicAbsorptionSpectroscopy" + "@id": "bts:Caecum" }, { - "@id": "bts:AtomicForceMicroscopy" + "@id": "bts:Cancer-AssociatedFibroblast" }, { - "@id": "bts:Autoradiography" + "@id": "bts:Cardia" }, { - "@id": "bts:Barcode-Seq" + "@id": "bts:Cartilage" }, { - "@id": "bts:BicinchoninicAcidAssay" + "@id": "bts:CervixUteri" }, { - "@id": "bts:BindingAssay" + "@id": "bts:Choroid" }, { - "@id": "bts:Bio-LayerInterferometry" + "@id": "bts:Colon" }, { - "@id": "bts:BioluminescenceImaging" + "@id": "bts:ConnectiveandSoftTissue" }, { - "@id": "bts:BisulfiteSequencing" + "@id": "bts:Cornea" }, { - "@id": "bts:BrightfieldMicroscopy" + "@id": "bts:Duodenum" }, { - "@id": "bts:BrillouinMicroscopy" + "@id": "bts:Ear" }, { - "@id": "bts:CASFISH" + "@id": "bts:Embryo" }, { - "@id": "bts:CITE-seq" + "@id": "bts:EmbryonicHeart" }, { - "@id": "bts:CLIP-qPCR" + "@id": "bts:Endocervix" }, { - "@id": "bts:CRISPR" + "@id": "bts:Endometrium" }, { - "@id": "bts:CUT&RUN" + "@id": "bts:Endothelium" }, { - "@id": "bts:CUT&Tag-Sequencing" + "@id": "bts:Epithelium" }, { - "@id": "bts:CellAdhesionAssay" + "@id": "bts:Esophagus" }, { - "@id": "bts:CellProliferationAssay" + "@id": "bts:Eye" }, { - "@id": "bts:CellViabilityAssay" + "@id": "bts:FallopianTube" }, { - "@id": "bts:Cell-spreadingAssay" + "@id": "bts:Foreskin" }, { - "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay" + "@id": "bts:FrontalLobe" }, { - "@id": "bts:CerenkovLuminescenceImaging" + "@id": "bts:GastroesophagealJunction" }, { - "@id": "bts:ChIA-PET" + "@id": "bts:GastrointestinalTract" }, { - "@id": "bts:ChIP-PCR" + "@id": "bts:Genitourinary" }, { - "@id": "bts:ChIP-Seq" + "@id": "bts:HairFollicle" }, { - "@id": "bts:ChIP-qPCRassay" + "@id": "bts:HeadandNeck" }, { - "@id": "bts:ChemiluminescentAssay" + "@id": "bts:Heart" }, { - "@id": "bts:ChemotaxisAssay" + "@id": "bts:HeartMuscle" }, { - "@id": "bts:CircularDichroismSpectroscopy" + "@id": "bts:HematopoieticSystem" }, { - "@id": "bts:Co-Immunoprecipitation" + "@id": "bts:Hippocampus" }, { - "@id": "bts:Co-cultureAssay" + "@id": "bts:Intestine" }, { - "@id": "bts:Collision-InducedDissociation" + "@id": "bts:Intra-AbdominalLymphNodes" }, { - "@id": "bts:ColorimetricCellViabilityAssay" + "@id": "bts:IntrathoracicLymphNodes" }, { - "@id": "bts:ComputationalModeling" + "@id": "bts:Joint" }, { - "@id": "bts:ComputationalTool" + "@id": "bts:Kidney" }, { - "@id": "bts:ComputedTomography" + "@id": "bts:Larynx" }, { - "@id": "bts:ConfocalMicroscopy" + "@id": "bts:Ligament" }, { - "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy" + "@id": "bts:Liver" }, { - "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing" + "@id": "bts:Lung" }, { - "@id": "bts:Cross-LinkingMassSpectrometry" + "@id": "bts:Lymph" }, { - "@id": "bts:CyclicImmunofluorescence" + "@id": "bts:LymphNode" }, { - "@id": "bts:CytochemicalStain" + "@id": "bts:LymphNodesofAxillaorArm" }, { - 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"@id": "bts:MultipleMyeloma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel2_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:SequencingLevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:MycosisFungoides" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel1.SequencingLevel1_id Value" + ] + }, + { + "@id": "bts:SequencingLevel3", + "@type": "rdfs:Class", + "rdfs:comment": "Sequencing data that has been aligned with a reference genome.", + "rdfs:label": "SequencingLevel3", + "rdfs:subClassOf": [ { - "@id": "bts:MyeloidLeukemia" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sequencing Level 3", + "sms:required": "sms:false", + "sms:requiresDependency": [ { - "@id": "bts:MyeloidNeoplasm" + "@id": "bts:Component" }, { - "@id": "bts:MyeloproliferativeNeoplasm" + "@id": "bts:SequencingLevel3Id" }, { - "@id": "bts:Myoepithelioma" + "@id": "bts:SequencingLevel2Key" }, { - "@id": "bts:NasopharyngealCarcinoma" + "@id": "bts:Filename" }, { - "@id": "bts:Neuroblastoma" + "@id": "bts:NGSUniqueProbeCount" }, { - "@id": "bts:NeuroendocrineNeoplasm" + "@id": "bts:NGSUniqueTargetCount" }, { - "@id": "bts:NeuroepithelialNeoplasm" + "@id": "bts:NGSMatrixType" }, { - "@id": "bts:Neurofibroma" + "@id": "bts:SoftwareandVersion" }, { - "@id": "bts:Non-FunctioningPituitaryGlandAdenoma" + "@id": "bts:WorkflowType" }, { - "@id": "bts:Non-HodgkinLymphoma" + "@id": "bts:WorkflowParameterDescription" }, { - "@id": "bts:NotApplicable" - }, + "@id": "bts:WorkflowLink" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingLevel3Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", + "rdfs:label": "SequencingLevel3Id", + "rdfs:subClassOf": [ { - "@id": "bts:OralCavityNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel3_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:SequencingLevel2Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel2Key", + "rdfs:subClassOf": [ { - "@id": "bts:OralCavitySquamousCellCarcinoma" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel2 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel2.SequencingLevel2_id Value" + ] + }, + { + "@id": "bts:RawCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "RawCounts", + "rdfs:subClassOf": [ { - "@id": "bts:OropharyngealNeoplasm" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Raw Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NormalizedCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NormalizedCounts", + "rdfs:subClassOf": [ { - "@id": "bts:Osteosarcoma" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Normalized Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ScaledCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ScaledCounts", + "rdfs:subClassOf": [ { - "@id": "bts:OvarianAdenosarcoma" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Scaled Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BatchCorrectedCounts", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BatchCorrectedCounts", + "rdfs:subClassOf": [ { - "@id": "bts:OvarianCarcinoma" - }, + "@id": "bts:NGSMatrixType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Batch Corrected Counts", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingRNALevel1", + "@type": "rdfs:Class", + "rdfs:comment": "Unaligned/unprocessed RNA sequencing data", + "rdfs:label": "SequencingRNALevel1", + "rdfs:subClassOf": [ { - "@id": "bts:OvarianNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sequencing RNA Level 1", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:OvarianSerousAdenocarcinoma" - }, + "@id": "bts:SequencingLevel1" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Pan-cancer" + "@id": "bts:Component" }, { - "@id": "bts:PancreaticAdenocarcinoma" + "@id": "bts:SequencingRNALevel1Id" }, { - "@id": "bts:PancreaticCarcinoma" + "@id": "bts:Filename" }, { - "@id": "bts:PancreaticDuctalAdenocarcinoma" + "@id": "bts:NGSRNAEndBias" }, { - "@id": "bts:PancreaticNeoplasm" + "@id": "bts:NGSRNAReverseTranscriptionPrimer" }, { - "@id": "bts:PancreaticNeuroendocrineCarcinoma" + "@id": "bts:NGSRNARIN" }, { - "@id": "bts:PendingAnnotation" - }, + "@id": "bts:NGSRNADV200" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingRNALevel1Id", + "@type": "rdfs:Class", + "rdfs:comment": "A unique identifier used by schematic for record updates and as a reference key in other schemas", + "rdfs:label": "SequencingRNALevel1Id", + "rdfs:subClassOf": [ { - "@id": "bts:PenileCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingRNALevel1_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:NGSRNAEndBias", + "@type": "rdfs:Class", + "rdfs:comment": "The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript", + "rdfs:label": "NGSRNAEndBias", + "rdfs:subClassOf": [ { - "@id": "bts:Pheochromocytoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:PilocyticAstrocytoma" + "@id": "bts:3Prime" }, { - "@id": "bts:PituitaryGlandAdenoma" + "@id": "bts:5Prime" }, { - "@id": "bts:PlasmablasticLymphoma" - }, + "@id": "bts:FullLengthTranscript" + } + ], + "sms:displayName": "NGS RNA End Bias", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:NGSRNAReverseTranscriptionPrimer", + "@type": "rdfs:Class", + "rdfs:comment": "An oligo to which new deoxyribonucleotides can be added by DNA polymerase [SO_0000112]. The type of primer used for reverse transcription, e.g. oligo-dT or random primer. This allows users to identify content of the cDNA library input e.g. enriched for mRNA", + "rdfs:label": "NGSRNAReverseTranscriptionPrimer", + "rdfs:subClassOf": [ { - "@id": "bts:Plasmacytoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:PlexiformSchwannoma" + "@id": "bts:Oligo-dT" }, { - "@id": "bts:PrecursorB-celllymphoblasticleukemia" + "@id": "bts:Poly-dT" }, { - "@id": "bts:PrimaryCentralNervousSystemLymphoma" + "@id": "bts:Featurebarcoding" }, { - "@id": "bts:PrimaryMyelofibrosis" - }, + "@id": "bts:Random" + } + ], + "sms:displayName": "NGS RNA Reverse Transcription Primer", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:NGSRNARIN", + "@type": "rdfs:Class", + "rdfs:comment": "A numerical assessment of the integrity of RNA based on the entire electrophoretic trace of the RNA sample including the presence or absence of degradation products. Number", + "rdfs:label": "NGSRNARIN", + "rdfs:subClassOf": [ { - "@id": "bts:ProstateAdenocarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS RNA RIN", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSRNADV200", + "@type": "rdfs:Class", + "rdfs:comment": "Represents the percentage of RNA fragments that are >200 nucleotides in size. Number", + "rdfs:label": "NGSRNADV200", + "rdfs:subClassOf": [ { - "@id": "bts:ProstateCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS RNA DV200", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:3Prime", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "3Prime", + "rdfs:subClassOf": [ { - "@id": "bts:ProstateNeoplasm" - }, + "@id": "bts:NGSRNAEndBias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "3 Prime", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:5Prime", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "5Prime", + "rdfs:subClassOf": [ { - "@id": "bts:RectalAdenocarcinoma" - }, + "@id": "bts:NGSRNAEndBias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "5 Prime", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FullLengthTranscript", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "FullLengthTranscript", + "rdfs:subClassOf": [ { - "@id": "bts:RenalCellCarcinoma" - }, + "@id": "bts:NGSRNAEndBias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Full Length Transcript", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Poly-dT", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Poly-dT", + "rdfs:subClassOf": [ { - "@id": "bts:Retinoblastoma" - }, + "@id": "bts:NGSRNAReverseTranscriptionPrimer" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Poly-dT", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Featurebarcoding", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Featurebarcoding", + "rdfs:subClassOf": [ { - "@id": "bts:Rhabdomyosarcoma" - }, + "@id": "bts:NGSRNAReverseTranscriptionPrimer" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Feature barcoding", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Shared", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Shared", + "rdfs:subClassOf": [ { - "@id": "bts:Rosette-FormingGlioneuronalTumor" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "shared", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProjectViewKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ProjectView_id foreign key(s) that group the resource with other components, as part of the same grant-associated studies. Please provide multiple values as a comma-separated list.", + "rdfs:label": "ProjectViewKey", + "rdfs:subClassOf": [ { - "@id": "bts:SalivaryGlandAdenoidCysticCarcinoma" - }, + "@id": "bts:Project" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ProjectView Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ProjectView.ProjectView_id Value" + ] + }, + { + "@id": "bts:PersonViewKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique PersonView_id foreign key(s) that group the resource with other components, as part of the same person-associated studies. Please provide multiple values as a comma-separated list.", + "rdfs:label": "PersonViewKey", + "rdfs:subClassOf": [ { - "@id": "bts:Sarcoma" - }, + "@id": "bts:Person" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "PersonView Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne PersonView.PersonView_id Value" + ] + }, + { + "@id": "bts:Person", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Person", + "rdfs:subClassOf": [ { - "@id": "bts:Schwannoma" - }, + "@id": "bts:ToolEntityType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Person", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ConsortiumKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique Consortium_id foreign key(s) that group the resource with other components, as part of the same consortium-associated grants. Please provide multiple values as a comma-separated list.", + "rdfs:label": "ConsortiumKey", + "rdfs:subClassOf": [ { - "@id": "bts:SerousTubalIntraepithelialCarcinoma" - }, + "@id": "bts:Consortium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Consortium Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne Consortium.Consortium_id Value" + ] + }, + { + "@id": "bts:Grant", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Grant", + "rdfs:subClassOf": [ { - "@id": "bts:SinonasalSquamousCellCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "grant", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Dataset", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Dataset", + "rdfs:subClassOf": [ { - "@id": "bts:SkinCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "dataset", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Publication", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Publication", + "rdfs:subClassOf": [ { - "@id": "bts:SkinNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "publication", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Tool", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Tool", + "rdfs:subClassOf": [ { - "@id": "bts:SoftTissueSarcoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "tool", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Education", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Education", + "rdfs:subClassOf": [ { - "@id": "bts:SquamousCellCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "education", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DataDSPKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique DataDSP_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list.", + "rdfs:label": "DataDSPKey", + "rdfs:subClassOf": [ { - "@id": "bts:SynovialSarcoma" - }, + "@id": "bts:SharingPlans" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataDSP Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne DataDSP.DataDSP_id Value" + ] + }, + { + "@id": "bts:SharingPlans", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SharingPlans", + "rdfs:subClassOf": [ { - "@id": "bts:TAcuteLymphoblasticLeukemia" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "sharingPlans", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FileViewKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique FileView_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "FileViewKey", + "rdfs:subClassOf": [ { - "@id": "bts:T-CellLymphoma" - }, + "@id": "bts:File" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "FileView Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne FileView.FileView_id Value" + ] + }, + { + "@id": "bts:File", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "File", + "rdfs:subClassOf": [ { - "@id": "bts:Teratoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "file", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Geomx", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Geomx", + "rdfs:subClassOf": [ { - "@id": "bts:TesticularEmbryonalCarcinoma" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "geomx", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NanoStringGeoMxDSPImagingKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxDSPImaging_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPImagingKey", + "rdfs:subClassOf": [ { - "@id": "bts:ThyroidGlandAnaplasticCarcinoma" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPImaging Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPImaging.NanoStringGeoMxDSPImaging_id Value" + ] + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel3Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel3Key", + "rdfs:subClassOf": [ { - "@id": "bts:ThyroidGlandCarcinoma" - }, + "@id": "bts:Geomx" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NanoStringGeoMxDSPLevel3 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne NanoStringGeoMxDSPLevel3.NanoStringGeoMxDSPLevel3_id Value" + ] + }, + { + "@id": "bts:ImagingLevel4Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique ImagingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingLevel4Key", + "rdfs:subClassOf": [ { - "@id": "bts:ThyroidGlandNoninvasiveFollicularNeoplasmwithPapillary-LikeNuclearFeatures" - }, + "@id": "bts:Imaging" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "ImagingLevel4 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne ImagingLevel4.ImagingLevel4_id Value" + ] + }, + { + "@id": "bts:Sequencing", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Sequencing", + "rdfs:subClassOf": [ { - "@id": "bts:Triple-NegativeBreastCarcinoma" - }, + "@id": "bts:ToolTopic" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Sequencing", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SequencingLevel3Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel3Key", + "rdfs:subClassOf": [ { - "@id": "bts:UrothelialCarcinoma" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel3 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel3.SequencingLevel3_id Value" + ] + }, + { + "@id": "bts:SequencingLevel4Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingLevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingLevel4Key", + "rdfs:subClassOf": [ { - "@id": "bts:UterineAdenosarcoma" - }, + "@id": "bts:Sequencing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingLevel4 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingLevel4.SequencingLevel4_id Value" + ] + }, + { + "@id": "bts:SequencingRNALevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique SequencingRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "SequencingRNALevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:UvealMelanoma" - }, + "@id": "bts:SequencingRNA" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SequencingRNALevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne SequencingRNALevel1.SequencingRNALevel1_id Value" + ] + }, + { + "@id": "bts:SequencingRNA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SequencingRNA", + "rdfs:subClassOf": [ { - "@id": "bts:UvealNeoplasm" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "sequencing RNA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:10xVisiumRNALevel1Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumRNALevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel1Key", + "rdfs:subClassOf": [ { - "@id": "bts:VascularNeoplasm" - }, + "@id": "bts:Visium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumRNALevel1 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumRNALevel1.10xVisiumRNALevel1_id Value" + ] + }, + { + "@id": "bts:Visium", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Visium", + "rdfs:subClassOf": [ { - "@id": "bts:Not-Applicable" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "visium", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:10xVisiumRNALevel2Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumRNALevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel2Key", + "rdfs:subClassOf": [ { - "@id": "bts:PlexiformNeurofibroma" + "@id": "bts:Visium" } ], - "sms:displayName": "DSP Dataset Tumor Type", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumRNALevel2 Key", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "matchAtLeastOne 10xVisiumRNALevel2.10xVisiumRNALevel2_id Value" ] }, { - "@id": "bts:DSPDatasetTissue", + "@id": "bts:10xVisiumRNALevel3Key", "@type": "rdfs:Class", - "rdfs:comment": "Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetTissue", + "rdfs:comment": "Unique 10xVisiumRNALevel3_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel3Key", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:Visium" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:Gonad" - }, - { - "@id": "bts:AbdominalEsophagus" - }, - { - "@id": "bts:AdiposeTissue" - }, - { - "@id": "bts:AdrenalGland" - }, - { - "@id": "bts:Alveolus" - }, - { - "@id": "bts:Aorta" - }, - { - "@id": "bts:Artery" - }, - { - "@id": "bts:AscendingColon" - }, - { - "@id": "bts:BileDuct" - }, - { - "@id": "bts:Bladder" - }, - { - "@id": "bts:Blood" - }, - { - "@id": "bts:BloodVessel" - }, - { - "@id": "bts:Bone" - }, - { - "@id": "bts:BoneMarrow" - }, - { - "@id": "bts:Brain" - }, - { - "@id": "bts:Breast" - }, - { - "@id": "bts:Caecum" - }, - { - "@id": "bts:Cancer-AssociatedFibroblast" - }, - { - "@id": "bts:Cardia" - }, - { - "@id": "bts:Cartilage" - }, - { - "@id": "bts:CervixUteri" - }, - { - "@id": "bts:Choroid" - }, - { - "@id": "bts:Colon" - }, - { - "@id": "bts:ConnectiveandSoftTissue" - }, - { - "@id": "bts:Cornea" - }, - { - "@id": "bts:Duodenum" - }, - { - "@id": "bts:Ear" - }, - { - "@id": "bts:Embryo" - }, - { - "@id": "bts:EmbryonicHeart" - }, - { - "@id": "bts:Endocervix" - }, - { - "@id": "bts:Endometrium" - }, - { - "@id": "bts:Endothelium" - }, - { - "@id": "bts:Epithelium" - }, - { - "@id": "bts:Esophagus" - }, - { - "@id": "bts:Eye" - }, - { - "@id": "bts:FallopianTube" - }, - { - "@id": "bts:Foreskin" - }, - { - "@id": "bts:FrontalLobe" - }, - { - "@id": "bts:GastroesophagealJunction" - }, - { - "@id": "bts:GastrointestinalTract" - }, - { - "@id": "bts:Genitourinary" - }, - { - "@id": "bts:HairFollicle" - }, - { - "@id": "bts:HeadandNeck" - }, - { - "@id": "bts:Heart" - }, - { - "@id": "bts:HeartMuscle" - }, - { - "@id": "bts:HematopoieticSystem" - }, - { - "@id": "bts:Hippocampus" - }, - { - "@id": "bts:Intestine" - }, - { - "@id": "bts:Intra-AbdominalLymphNodes" - }, - { - "@id": "bts:IntrathoracicLymphNodes" - }, - { - "@id": "bts:Joint" - }, - { - "@id": "bts:Kidney" - }, - { - "@id": "bts:Larynx" - }, - { - "@id": "bts:Ligament" - }, - { - "@id": "bts:Liver" - }, - { - "@id": "bts:Lung" - }, - { - "@id": "bts:Lymph" - }, - { - "@id": "bts:LymphNode" - }, - { - "@id": "bts:LymphNodesofAxillaorArm" - }, - { - "@id": "bts:LymphNodesofInguinalRegionorLeg" - }, - { - "@id": "bts:LymphaticSystem" - }, - { - "@id": "bts:LymphoidTissue" - }, - { - "@id": "bts:MainBronchus" - }, - { - "@id": "bts:MammaryGland" - }, - { - "@id": "bts:Meninges" - }, - { - "@id": "bts:Mesenchyme" - }, - { - "@id": "bts:Mucosa" - }, - { - "@id": "bts:Muscle" - }, - { - "@id": "bts:NasalCavity" - }, - { - "@id": "bts:NervousSystem" - }, - { - "@id": "bts:NotApplicable" - }, - { - "@id": "bts:OlfactoryMucosa" - }, - { - "@id": "bts:Omentum" - }, - { - "@id": "bts:OralCavity" - }, - { - "@id": "bts:OralMucosa" - }, - { - "@id": "bts:Ovary" - }, - { - "@id": "bts:Pancreas" - }, - { - "@id": "bts:PelvicLymphNodes" - }, + "sms:displayName": "10xVisiumRNALevel3 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumRNALevel3.10xVisiumRNALevel3_id Value" + ] + }, + { + "@id": "bts:10xVisiumRNALevel4Key", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumRNALevel4_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumRNALevel4Key", + "rdfs:subClassOf": [ { - "@id": "bts:PendingAnnotation" - }, + "@id": "bts:Visium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumRNALevel4 Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumRNALevel4.10xVisiumRNALevel4_id Value" + ] + }, + { + "@id": "bts:10xVisiumAuxiliaryFilesKey", + "@type": "rdfs:Class", + "rdfs:comment": "Unique 10xVisiumAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "10xVisiumAuxiliaryFilesKey", + "rdfs:subClassOf": [ { - "@id": "bts:PeriodontalLigament" - }, + "@id": "bts:Visium" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "10xVisiumAuxiliaryFiles Key", + "sms:required": "sms:false", + "sms:validationRules": [ + "matchAtLeastOne 10xVisiumAuxiliaryFiles.10xVisiumAuxiliaryFiles_id Value" + ] + }, + { + "@id": "bts:WorkflowVersion", + "@type": "rdfs:Class", + "rdfs:comment": "Major version of the workflow (e.g. Cell Ranger v3.1)", + "rdfs:label": "WorkflowVersion", + "rdfs:subClassOf": [ { - "@id": "bts:PeripheralNerves" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Version", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:GenomicReferenceURL", + "@type": "rdfs:Class", + "rdfs:comment": "Link to human genome sequence; ftp or reference URL will be accepted.", + "rdfs:label": "GenomicReferenceURL", + "rdfs:subClassOf": [ { - "@id": "bts:Peritoneum" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genomic Reference URL", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:GenomeAnnotationURL", + "@type": "rdfs:Class", + "rdfs:comment": "Link to the human genome annotation (GTF) file; ftp or reference URL will be accepted.", + "rdfs:label": "GenomeAnnotationURL", + "rdfs:subClassOf": [ { - "@id": "bts:Pharynx" - }, + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genome Annotation URL", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:DataDSP", + "@type": "rdfs:Class", + "rdfs:comment": "Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.", + "rdfs:label": "DataDSP", + "rdfs:subClassOf": [ { - "@id": "bts:PituitaryGland" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataDSP", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:Placenta" - }, + "@id": "bts:Study" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Pleura" + "@id": "bts:Component" }, { - "@id": "bts:ProstateGland" + "@id": "bts:DataDSPId" }, { - "@id": "bts:Rectum" + "@id": "bts:GrantViewKey" }, { - "@id": "bts:ReproductiveSystem" + "@id": "bts:StudyKey" }, { - "@id": "bts:RespiratorySystem" + "@id": "bts:DatasetViewKey" }, { - "@id": "bts:SalivaryGland" + "@id": "bts:DSPDatasetAlias" }, { - "@id": "bts:Sclera" + "@id": "bts:DSPDatasetName" }, { - "@id": "bts:SinonasalTract" + "@id": "bts:DSPDatasetUrl" }, { - "@id": "bts:Skin" + "@id": "bts:DSPDatasetAssay" }, { - "@id": "bts:SmallIntestine" + "@id": "bts:DSPDatasetLevel" }, { - "@id": "bts:SpinalCord" + "@id": "bts:DSPDatasetSpecies" }, { - "@id": "bts:Spleen" + "@id": "bts:DSPDatasetTumorType" }, { - "@id": "bts:Stomach" + "@id": "bts:DSPDatasetTissue" }, { - "@id": "bts:SynovialMembrane" + "@id": "bts:DSPDatasetFileFormats" }, { - "@id": "bts:Tendon" + "@id": "bts:DSPNumberofFiles" }, { - "@id": "bts:Testis" + "@id": "bts:DSPNumberofSamples" }, { - "@id": "bts:Thymus" + "@id": "bts:DSPNumberofParticipants" }, { - "@id": "bts:ThyroidGland" + "@id": "bts:DSPStorageSize" }, { - "@id": "bts:Tongue" + "@id": "bts:DSPDatasetDescription" }, { - "@id": "bts:Tonsil" + "@id": "bts:DSPPlannedUploadDate" }, { - "@id": "bts:Trachea" + "@id": "bts:DSPPlannedReleaseDate" }, { - "@id": "bts:UmbilicalCord" + "@id": "bts:DSPDataUseCodes" }, { - "@id": "bts:Unspecified" + "@id": "bts:DSPIRBForm" }, { - "@id": "bts:Uterus" + "@id": "bts:DSPDatasetDestination" }, { - "@id": "bts:Vagina" - }, + "@id": "bts:DSPDatasetMetadata" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:DataDSPId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "DataDSPId", + "rdfs:subClassOf": [ { - "@id": "bts:VascularEndothelium" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataDSP_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:DSPDatasetAlias", + "@type": "rdfs:Class", + "rdfs:comment": "Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.", + "rdfs:label": "DSPDatasetAlias", + "rdfs:subClassOf": [ { - "@id": "bts:Vein" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DSP Dataset Alias", + "sms:required": "sms:false", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:DSPDatasetName", + "@type": "rdfs:Class", + "rdfs:comment": "Name of the dataset", + "rdfs:label": "DSPDatasetName", + "rdfs:subClassOf": [ { - "@id": "bts:Vertebra" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DSP Dataset Name", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:DSPDatasetUrl", + "@type": "rdfs:Class", + "rdfs:comment": "The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.", + "rdfs:label": "DSPDatasetUrl", + "rdfs:subClassOf": [ { - "@id": "bts:PeripheralBloodMononuclearCell" + "@id": "bts:Thing" } ], - "sms:displayName": "DSP Dataset Tissue", + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DSP Dataset Url", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "url" ] }, { - "@id": "bts:DSPDatasetFileFormats", + "@id": "bts:DSPDatasetAssay", "@type": "rdfs:Class", - "rdfs:comment": "A list of file formats associated with the dataset. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetFileFormats", + "rdfs:comment": "The type of data contained in this group of files. Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetAssay", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -315948,6465 +322578,4587 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:AVI" - }, - { - "@id": "bts:BAI" - }, - { - "@id": "bts:BAM" - }, - { - "@id": "bts:BED" - }, - { - "@id": "bts:CDS" - }, - { - "@id": "bts:CHP" - }, - { - "@id": "bts:COOL" - }, - { - "@id": "bts:CSV" - }, - { - "@id": "bts:DAE" - }, - { - "@id": "bts:DB" - }, - { - "@id": "bts:DSStore" - }, - { - "@id": "bts:FASTA" - }, - { - "@id": "bts:FASTQ" - }, - { - "@id": "bts:FCS" - }, - { - "@id": "bts:FIG" - }, - { - "@id": "bts:FREQ" + "@id": "bts:10-cellRNASequencing" }, { - "@id": "bts:GCG" + "@id": "bts:16SRibosomalGeneSequencingAssay" }, { - "@id": "bts:GCT" + "@id": "bts:3'RNA-seq" }, { - "@id": "bts:GCTx" + "@id": "bts:3C" }, { - "@id": "bts:GFF3" + "@id": "bts:3C-qPCR" }, { - "@id": "bts:GTF" + "@id": "bts:3DATAC-PALM" }, { - "@id": "bts:GZIPFormat" + "@id": "bts:3DBioprinting" }, { - "@id": "bts:HDF" + "@id": "bts:3DCellCulture" }, { - "@id": "bts:HDF5" + "@id": "bts:4C" }, { - "@id": "bts:HTML" + "@id": "bts:5C" }, { - "@id": "bts:IDAT" + "@id": "bts:ATAC-Seq" }, { - "@id": "bts:JPG" + "@id": "bts:ATPBioluminescenceAssay" }, { - "@id": "bts:JSON" + "@id": "bts:AffinityPurificationMassSpectrometry" }, { - "@id": "bts:LIF" + "@id": "bts:Allograft" }, { - "@id": "bts:MAP" + "@id": "bts:AmpliconSequencing" }, { - "@id": "bts:MAT" + "@id": "bts:AngiogenesisAssay" }, { - "@id": "bts:MATLABscript" + "@id": "bts:ApoptosisAssay" }, { - "@id": "bts:MSF" + "@id": "bts:AtomicAbsorptionSpectrophotometry" }, { - "@id": "bts:MTX" + "@id": "bts:AtomicAbsorptionSpectroscopy" }, { - "@id": "bts:PDF" + "@id": "bts:AtomicForceMicroscopy" }, { - "@id": "bts:PNG" + "@id": "bts:Autoradiography" }, { - "@id": "bts:PZFX" + "@id": "bts:Barcode-Seq" }, { - "@id": "bts:PythonScript" + "@id": "bts:BicinchoninicAcidAssay" }, { - "@id": "bts:RFileFormat" + "@id": "bts:BindingAssay" }, { - "@id": "bts:RAW" + "@id": "bts:Bio-LayerInterferometry" }, { - "@id": "bts:RDS" + "@id": "bts:BioluminescenceImaging" }, { - "@id": "bts:ROUT" + "@id": "bts:BisulfiteSequencing" }, { - "@id": "bts:RPROJ" + "@id": "bts:BrightfieldMicroscopy" }, { - "@id": "bts:RTF" + "@id": "bts:BrillouinMicroscopy" }, { - "@id": "bts:SGI" + "@id": "bts:CASFISH" }, { - "@id": "bts:SRA" + "@id": "bts:CITE-seq" }, { - "@id": "bts:STAT" + "@id": "bts:CLIP-qPCR" }, { - "@id": "bts:TARFormat" + "@id": "bts:CRISPR" }, { - "@id": "bts:TDF" + "@id": "bts:CUT&RUN" }, { - "@id": "bts:TIFF" + "@id": "bts:CUT&Tag-Sequencing" }, { - "@id": "bts:TSV" + "@id": "bts:CellAdhesionAssay" }, { - "@id": "bts:TXT" + "@id": "bts:CellProliferationAssay" }, { - "@id": "bts:VCF" + "@id": "bts:CellViabilityAssay" }, { - "@id": "bts:WIG" + "@id": "bts:Cell-spreadingAssay" }, { - "@id": "bts:XML" + "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay" }, { - "@id": "bts:ZIP" + "@id": "bts:CerenkovLuminescenceImaging" }, { - "@id": "bts:Bed12" + "@id": "bts:ChIA-PET" }, { - "@id": "bts:Bedgraph" + "@id": "bts:ChIP-PCR" }, { - "@id": "bts:Cel" + "@id": "bts:ChIP-Seq" }, { - "@id": "bts:Cloupe" + "@id": "bts:ChIP-qPCRassay" }, { - "@id": "bts:Docx" + "@id": "bts:ChemiluminescentAssay" }, { - "@id": "bts:MzIdentML" + "@id": "bts:ChemotaxisAssay" }, { - "@id": "bts:MzXML" + "@id": "bts:CircularDichroismSpectroscopy" }, { - "@id": "bts:Pptx" + "@id": "bts:Co-Immunoprecipitation" }, { - "@id": "bts:Rcc" + "@id": "bts:Co-cultureAssay" }, { - "@id": "bts:Xls" + "@id": "bts:Collision-InducedDissociation" }, { - "@id": "bts:Xlsx" + "@id": "bts:ColorimetricCellViabilityAssay" }, { - "@id": "bts:MGF" + "@id": "bts:ComputationalModeling" }, { - "@id": "bts:BIGWIG" + "@id": "bts:ComputationalTool" }, { - "@id": "bts:H5AD" + "@id": "bts:ComputedTomography" }, { - "@id": "bts:H5" + "@id": "bts:ConfocalMicroscopy" }, { - "@id": "bts:SF" + "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy" }, { - "@id": "bts:PKL" + "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing" }, { - "@id": "bts:BPM" + "@id": "bts:Cross-LinkingMassSpectrometry" }, { - "@id": "bts:Unspecified" + "@id": "bts:CyclicImmunofluorescence" }, { - "@id": "bts:PendingAnnotation" + "@id": "bts:CytochemicalStain" }, { - "@id": "bts:Maf" + "@id": "bts:CytokineExpressionProfile" }, { - "@id": "bts:CLS" + "@id": "bts:CytometricBeadArrayAssay" }, { - "@id": "bts:SCN" + "@id": "bts:CytotoxicityAssay" }, { - "@id": "bts:SVS" - } - ], - "sms:displayName": "DSP Dataset File Formats", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:DSPNumberofFiles", - "@type": "rdfs:Class", - "rdfs:comment": "The number of files that will be uploaded as part of this dataset.", - "rdfs:label": "DSPNumberofFiles", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Number of Files", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPNumberofSamples", - "@type": "rdfs:Class", - "rdfs:comment": "The number of biospecimens associated with the files included in the dataset", - "rdfs:label": "DSPNumberofSamples", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Number of Samples", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPNumberofParticipants", - "@type": "rdfs:Class", - "rdfs:comment": "The number of individuals or model organisms from which samples were collected to generate the dataset.", - "rdfs:label": "DSPNumberofParticipants", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Number of Participants", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPStorageSize", - "@type": "rdfs:Class", - "rdfs:comment": "The expected total storage space required for the dataset in gigabytes (GB)", - "rdfs:label": "DSPStorageSize", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Storage Size", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:DSPDatasetDescription", - "@type": "rdfs:Class", - "rdfs:comment": "A text description of the files contained in this dataset.", - "rdfs:label": "DSPDatasetDescription", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:DSPPlannedUploadDate", - "@type": "rdfs:Class", - "rdfs:comment": "A non-binding, estimated date by which the files are expected to be uploaded to a repository.", - "rdfs:label": "DSPPlannedUploadDate", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Planned Upload Date", - "sms:required": "sms:true", - "sms:validationRules": [ - "date" - ] - }, - { - "@id": "bts:DSPPlannedReleaseDate", - "@type": "rdfs:Class", - "rdfs:comment": "The projected date that marks the end of any requested or required sharing embargo for the dataset.", - "rdfs:label": "DSPPlannedReleaseDate", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Planned Release Date", - "sms:required": "sms:false", - "sms:validationRules": [ - "date" - ] - }, - { - "@id": "bts:DSPDataUseCodes", - "@type": "rdfs:Class", - "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", - "rdfs:label": "DSPDataUseCodes", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:IRB" + "@id": "bts:DBiT-Seq" }, { - "@id": "bts:HMB" + "@id": "bts:DNAGene-ExpressionMicroarray" }, { - "@id": "bts:PUB" + "@id": "bts:DNAMethylationArray" }, { - "@id": "bts:US" + "@id": "bts:DNASequencing" }, { - "@id": "bts:NPOA" + "@id": "bts:DNase-Seq" }, { - "@id": "bts:COL" + "@id": "bts:DRIP-seq" }, { - "@id": "bts:NCU" + "@id": "bts:DarkFieldMicroscopy" }, { - "@id": "bts:NPUNCU" + "@id": "bts:DeepMutationalScanning" }, { - "@id": "bts:RS" + "@id": "bts:DesorptionElectrosprayIonization" }, { - "@id": "bts:TS" + "@id": "bts:DideoxyChainTerminationDNASequencing" }, { - "@id": "bts:NRES" + "@id": "bts:DifferentialInterferenceContrastMicroscopy" }, { - "@id": "bts:NPU" + "@id": "bts:DifferentialScanningFluorimetry" }, { - "@id": "bts:DUM" + "@id": "bts:DiffusionWeightedImaging" }, { - "@id": "bts:POA" + "@id": "bts:DirectLong-ReadRNASequencing" }, { - "@id": "bts:MOR" + "@id": "bts:Drop-Seq" }, { - "@id": "bts:GSO" + "@id": "bts:DropletDigitalPCR" }, { - "@id": "bts:RTN" + "@id": "bts:Dual-LuciferaseReporterAssay" }, { - "@id": "bts:CC" + "@id": "bts:DyeEndocytosisAssay" }, { - "@id": "bts:NMDS" + "@id": "bts:DynamicContrast-EnhancedMagneticResonanceImaging" }, { - "@id": "bts:IS" + "@id": "bts:DynamicForceSpectroscopy" }, { - "@id": "bts:GS" + "@id": "bts:DynamicLightScattering" }, { - "@id": "bts:DS" + "@id": "bts:DynamicSusceptibilityContrast-EnhancedMagneticResonanceImaging" }, { - "@id": "bts:GRU" + "@id": "bts:ELISA" }, { - "@id": "bts:PS" - } - ], - "sms:displayName": "DSP Data Use Codes", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:DSPIRBForm", - "@type": "rdfs:Class", - "rdfs:comment": "The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset", - "rdfs:label": "DSPIRBForm", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP IRB Form", - "sms:required": "sms:false", - "sms:validationRules": [ - "regex match syn\\d+" - ] - }, - { - "@id": "bts:DSPDatasetDestination", - "@type": "rdfs:Class", - "rdfs:comment": "An identifier representing the repository in which this dataset is intended to be held for long term preservation.", - "rdfs:label": "DSPDatasetDestination", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Destination", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:DSPDatasetMetadata", - "@type": "rdfs:Class", - "rdfs:comment": "The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.", - "rdfs:label": "DSPDatasetMetadata", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DSP Dataset Metadata", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:DSPDatasetGrantNumber", - "@type": "rdfs:Class", - "rdfs:comment": "Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.", - "rdfs:label": "DSPDatasetGrantNumber", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Affiliated/Non-GrantAssociated" + "@id": "bts:EfferocytosisAssay" }, { - "@id": "bts:CA184897" + "@id": "bts:ElectronDiffraction" }, { - "@id": "bts:CA184898" + "@id": "bts:ElectronMicroscopy" }, { - "@id": "bts:CA188388" + "@id": "bts:ElectronParamagneticResonanceSpectroscopy" }, { - "@id": "bts:CA193313" + "@id": "bts:ElectrophoreticMobilityShiftAssay" }, { - "@id": "bts:CA193417" + "@id": "bts:ElectrosprayIonizationTime-of-FlightMassSpectrometry" }, { - "@id": "bts:CA193419" + "@id": "bts:EndotoxinAssay" }, { - "@id": "bts:CA193461" + "@id": "bts:Energy-DispersiveX-RaySpectroscopy" }, { - "@id": "bts:CA193489" + "@id": "bts:EnzymeActivityAssay" }, { - "@id": "bts:CA195469" + "@id": "bts:Enzyme-LinkedImmunospotAssay" }, { - "@id": "bts:CA199315" + "@id": "bts:EpidemiologicalMethod" }, { - "@id": "bts:CA202123" + "@id": "bts:FAIRE-Seq" }, { - "@id": "bts:CA202144" + "@id": "bts:FISH" }, { - "@id": "bts:CA202177" + "@id": "bts:FlowCytometry" }, { - "@id": "bts:CA202229" + "@id": "bts:FluorescenceActivatedCellSorting" }, { - "@id": "bts:CA202241" + "@id": "bts:FluorescenceCorrelationSpectroscopy" }, { - "@id": "bts:CA209891" + "@id": "bts:FluorescenceImaging" }, { - "@id": "bts:CA209923" + "@id": "bts:FluorescenceLifetimeImagingMicroscopy" }, { - "@id": "bts:CA209971" + "@id": "bts:FluorescenceMicroscopy" }, { - "@id": "bts:CA209975" + "@id": "bts:FluorescenceRecoveryAfterPhoto-Bleaching" }, { - "@id": "bts:CA209978" + "@id": "bts:FluorescentAntibodyProcedure" }, { - "@id": "bts:CA209988" + "@id": "bts:FluorescentCellBarcoding" }, { - "@id": "bts:CA209992" + "@id": "bts:FluorescentInSituSequencing" }, { - "@id": "bts:CA209997" + "@id": "bts:FocusedIonBeamScanningElectronMicroscopy" }, { - "@id": "bts:CA210152" + "@id": "bts:ForsterResonanceEnergyTransfer" }, { - "@id": "bts:CA210173" + "@id": "bts:FourierTransformIonCyclotronResonanceMassSpectrometry" }, { - "@id": "bts:CA210180" + "@id": "bts:Fourier-TransformInfraredSpectroscopy" }, { - "@id": "bts:CA210181" + "@id": "bts:GasChromatographyMassSpectrometry" }, { - "@id": "bts:CA210184" + "@id": "bts:GelatinZymography" }, { - "@id": "bts:CA210190" + "@id": "bts:Genotyping" }, { - "@id": "bts:CA214282" + "@id": "bts:GlobalChromatinProfiling" }, { - "@id": "bts:CA214292" + "@id": "bts:GlobalRun-OnSequencing" }, { - "@id": "bts:CA214297" + "@id": "bts:GraphiteFurnaceAtomicAbsorptionSpectrometry" }, { - "@id": "bts:CA214300" + "@id": "bts:HL-Chip" }, { - "@id": "bts:CA214354" + "@id": "bts:HPLC-MSMS" }, { - "@id": "bts:CA214369" + "@id": "bts:HematoxylinandEosinStainingMethod" }, { - "@id": "bts:CA214381" + "@id": "bts:Hi-C" }, { - "@id": "bts:CA214411" + "@id": "bts:HiChIP" }, { - "@id": "bts:CA215709" + "@id": "bts:HighThroughputScreening" }, { - "@id": "bts:CA215794" + "@id": "bts:High-ContentScreen" }, { - "@id": "bts:CA215798" + "@id": "bts:Hydrogels" }, { - "@id": "bts:CA215845" + "@id": "bts:HydrophilicInteractionChromatography" }, { - "@id": "bts:CA215848" + "@id": "bts:ImageCytometry" }, { - "@id": "bts:CA217297" + "@id": "bts:Imaging" }, { - "@id": "bts:CA217376" + "@id": "bts:ImmobilizedMetalAffinityChromatography" }, { - "@id": "bts:CA217377" + "@id": "bts:ImmunoFISH" }, { - "@id": "bts:CA217378" + "@id": "bts:Immunoassay" }, { - "@id": "bts:CA217450" + "@id": "bts:Immunocytochemistry" }, { - "@id": "bts:CA217456" + "@id": "bts:ImmunohistochemistryStainingMethod" }, { - "@id": "bts:CA217514" + "@id": "bts:Immunoprecipitation" }, { - "@id": "bts:CA217613" + "@id": "bts:InSituHybridization" }, { - "@id": "bts:CA217617" + "@id": "bts:InVitroCellKillingAssay" }, { - "@id": "bts:CA217655" + "@id": "bts:InVitroModel" }, { - "@id": "bts:CA220378" + "@id": "bts:InVitroSelection" }, { - "@id": "bts:CA223976" + "@id": "bts:InVitroTranslation" }, { - "@id": "bts:CA224012" + "@id": "bts:InVivoBioluminescence" }, { - "@id": "bts:CA224013" + "@id": "bts:In-CellWesternAssay" }, { - "@id": "bts:CA224044" + "@id": "bts:Inductively-CoupledPlasmaMassSpectrometry" }, { - "@id": "bts:CA225088" + "@id": "bts:InterferenceReflectionMicroscopy" }, { - "@id": "bts:CA225566" + "@id": "bts:IntravitalMicroscopy" }, { - "@id": "bts:CA227136" + "@id": "bts:InvasionAssay" }, { - "@id": "bts:CA227544" + "@id": "bts:Karyotyping" }, { - "@id": "bts:CA227550" + "@id": "bts:Knife-EdgeScanningMicroscopy" }, { - "@id": "bts:CA228608" + "@id": "bts:L1000mRNAProfilingAssay" }, { - "@id": "bts:CA228963" + "@id": "bts:LatticeLightSheetMicroscopy" }, { - "@id": "bts:CA231978" + "@id": "bts:LiquidChromatographyMassSpectrometry" }, { - "@id": "bts:CA232137" + "@id": "bts:LiquidChromatography/TandemMassSpectrometry" }, { - "@id": "bts:CA232161" + "@id": "bts:Low-VacuumScanningElectronMicroscopy" }, { - "@id": "bts:CA232209" + "@id": "bts:LuciferaseReporterAssay" }, { - "@id": "bts:CA232216" + "@id": "bts:LuminescentCellViabilityAssay" }, { - "@id": "bts:CA232382" + "@id": "bts:MALDI-TOFMassSpectrometry" }, { - "@id": "bts:CA232517" + "@id": "bts:MEMACellGrowthAssay" }, { - "@id": "bts:CA234787" + "@id": "bts:MNase-Seq" }, { - "@id": "bts:CA235747" + "@id": "bts:MULTI-Seq" }, { - "@id": "bts:CA238475" + "@id": "bts:MacrophagePolarizationAssay" }, { - "@id": "bts:CA238720" + "@id": "bts:MagneticResonanceImaging" }, { - "@id": "bts:CA238728" + "@id": "bts:MagneticTweezers" }, { - "@id": "bts:CA240301" + "@id": "bts:MagneticTwistingCytometry" }, { - "@id": "bts:CA241137" + "@id": "bts:MagneticallyActivatedCellSorting" }, { - "@id": "bts:CA241927" + "@id": "bts:MammosphereFormationAssay" }, { - "@id": "bts:CA243004" + "@id": "bts:MassCytometry" }, { - "@id": "bts:CA243007" + "@id": "bts:MassSpectrometry" }, { - "@id": "bts:CA243072" + "@id": "bts:MathematicalModeling" }, { - "@id": "bts:CA243073" + "@id": "bts:MeDIP" }, { - "@id": "bts:CA243075" + "@id": "bts:MeRIP-Seq" }, { - "@id": "bts:CA244100" + "@id": "bts:MethylBindingDomainSequencing" }, { - "@id": "bts:CA244101" + "@id": "bts:Methylation-SpecificPCR" }, { - "@id": "bts:CA244107" + "@id": "bts:Micro-computedTomography" }, { - "@id": "bts:CA244109" + "@id": "bts:MicroRNAExpressionArray" }, { - "@id": "bts:CA245313" + "@id": "bts:MicroRNASequencing" }, { - "@id": "bts:CA248890" + "@id": "bts:MicrocontactPrinting" }, { - "@id": "bts:CA249799" + "@id": "bts:Microfluidics" }, { - "@id": "bts:CA250040" + "@id": "bts:MicropipetteAdhesionAssay" }, { - "@id": "bts:CA250044" + "@id": "bts:MicropipetteAspiration" }, { - "@id": "bts:CA250046" + "@id": "bts:Microscopy" }, { - "@id": "bts:CA250481" + "@id": "bts:MigrationAssay" }, { - "@id": "bts:CA251443" + "@id": "bts:Mint-ChIP" }, { - "@id": "bts:CA253248" + "@id": "bts:Modeling" }, { - "@id": "bts:CA253472" + "@id": "bts:MolecularSimulations" }, { - "@id": "bts:CA253540" + "@id": "bts:MonolayerStressMicroscopy" }, { - "@id": "bts:CA253547" + "@id": "bts:Multi-AngleLightScattering" }, { - "@id": "bts:CA253553" + "@id": "bts:Multi-IsotopeMassSpectrometry" }, { - "@id": "bts:CA254200" + "@id": "bts:MultiparametricMagneticResonanceImaging" }, { - "@id": "bts:CA254886" + "@id": "bts:MultiphotonMicroscopy" }, { - "@id": "bts:CA256054" + "@id": "bts:MultiplexedError-RobustFluorescenceInSituHybridization" }, { - "@id": "bts:CA256481" + "@id": "bts:MultiplexedImmunofluorescence" }, { - "@id": "bts:CA260432" + "@id": "bts:MultiplexedImmunohistochemistry" }, { - "@id": "bts:CA261694" + "@id": "bts:MultiplexedIonBeamImaging" }, { - "@id": "bts:CA261701" + "@id": "bts:MurineModel" }, { - "@id": "bts:CA261717" + "@id": "bts:Nano-hmC-Seal" }, { - "@id": "bts:CA261719" + "@id": "bts:NanoStringDigitalSpatialProfiling" }, { - "@id": "bts:CA261822" + "@id": "bts:Nanopatterning" }, { - "@id": "bts:CA261841" + "@id": "bts:NanoporeSequencing" }, { - "@id": "bts:CA261842" + "@id": "bts:Nanowire" }, { - "@id": "bts:CA263001" + "@id": "bts:NestedPCR" }, { - "@id": "bts:CA264583" + "@id": "bts:NextGenerationSequencing" }, { - "@id": "bts:CA264610" + "@id": "bts:Nm-seq" }, { - "@id": "bts:CA264611" + "@id": "bts:NotApplicable" }, { - "@id": "bts:CA264620" + "@id": "bts:NuclearMagneticResonance" }, { - "@id": "bts:CA267170" + "@id": "bts:OpticalCoherenceTomography" }, { - "@id": "bts:CA268069" + "@id": "bts:OpticalEmissionSpectroscopy" }, { - "@id": "bts:CA268072" + "@id": "bts:OpticalMapping" }, { - "@id": "bts:CA268083" + "@id": "bts:OpticalStretcher" }, { - "@id": "bts:CA268084" + "@id": "bts:OpticalTweezers" }, { - "@id": "bts:CA271273" + "@id": "bts:OptogeneticAssay" }, { - "@id": "bts:CA274492" + "@id": "bts:Organoid" }, { - "@id": "bts:CA274494" + "@id": "bts:PCR" }, { - "@id": "bts:CA274499" + "@id": "bts:PET-CT" }, { - "@id": "bts:CA274502" + "@id": "bts:ParaquatSurvivalAssay" }, { - "@id": "bts:CA274509" + "@id": "bts:PartialWaveSpectroscopy" }, { - "@id": "bts:CA275808" + "@id": "bts:PatientDerivedXenograft" }, { - "@id": "bts:CA279408" + "@id": "bts:PendingAnnotation" }, { - "@id": "bts:CA279560" + "@id": "bts:PermeabilityAssay" }, { - "@id": "bts:CA280984" + "@id": "bts:PhagocytosisAssay" }, { - "@id": "bts:CA280849" + "@id": "bts:PhotoacousticImaging" }, { - "@id": "bts:CA280829" + "@id": "bts:Photolithography" }, { - "@id": "bts:CA284090" + "@id": "bts:PlasmidConstruction" }, { - "@id": "bts:CA284086" + "@id": "bts:PlateSeq" }, { - 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"@id": "bts:CA290442" + "@id": "bts:RT-PCR" }, { - "@id": "bts:CA293853" - } - ], - "sms:displayName": "DSP Dataset Grant Number", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:StudyId", - "@type": "rdfs:Class", - "rdfs:comment": "A unique primary key that enables record updates using schematic.", - "rdfs:label": "StudyId", - "rdfs:subClassOf": [ + "@id": "bts:RT-qPCR" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study_id", - "sms:required": "sms:true", - "sms:validationRules": [ - "unique" - ] - }, - { - "@id": "bts:StudydbGaPAccessionId", - "@type": "rdfs:Class", - "rdfs:comment": "A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.", - "rdfs:label": "StudydbGaPAccessionId", - "rdfs:subClassOf": [ + "@id": "bts:RamanSpectroscopy" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study dbGaP Accession Id", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of the study", - "rdfs:label": "StudyName", - "rdfs:subClassOf": [ + "@id": "bts:ReducedRepresentationBisulfiteSequencing" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Name", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.", - "rdfs:label": "StudyDescription", - "rdfs:subClassOf": [ + "@id": "bts:ReversePhaseProteinArray" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Description", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyInvestigator", - "@type": "rdfs:Class", - "rdfs:comment": "Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.", - "rdfs:label": "StudyInvestigator", - "rdfs:subClassOf": [ + "@id": "bts:Reverse-PhaseHigh-PerformanceliquidChromatography" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Investigator", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:StudyNumberofParticipants", - "@type": "rdfs:Class", - "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.", - "rdfs:label": "StudyNumberofParticipants", - "rdfs:subClassOf": [ + "@id": "bts:Rheometry" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Number of Participants", - "sms:required": "sms:true", - "sms:validationRules": [ - "int" - ] - }, - { - "@id": "bts:StudyDe-identificationMethodType", - "@type": "rdfs:Class", - "rdfs:comment": "General description of the de-identification method. Maps to DUOplus3.", - "rdfs:label": "StudyDe-identificationMethodType", - "rdfs:subClassOf": [ + "@id": "bts:Ribo-Seq" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:RibosomalPProteinAntibodyMeasurement" + }, { - "@id": "bts:Manual" + "@id": "bts:ScanningAngleInterferenceMicroscopy" }, { - "@id": "bts:Semiautomatic" + "@id": "bts:ScanningElectronMicroscopy" }, { - "@id": "bts:Automatic" + "@id": "bts:Second-HarmonicImagingMicroscopy" }, { - "@id": "bts:NotApplicable" - } - ], - "sms:displayName": "Study De-identification Method Type", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:StudyDe-identificationMethodDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.", - "rdfs:label": "StudyDe-identificationMethodDescription", - "rdfs:subClassOf": [ + "@id": "bts:ShotgunMassSpectrometry" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study De-identification Method Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyDe-identificationMethodSoftware", - "@type": "rdfs:Class", - "rdfs:comment": "Software that was used to de-identify the data (if used)", - "rdfs:label": "StudyDe-identificationMethodSoftware", - "rdfs:subClassOf": [ + "@id": "bts:SingleCellATAC-Seq" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study De-identification Method Software", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyIndexDate", - "@type": "rdfs:Class", - "rdfs:comment": "The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.", - "rdfs:label": "StudyIndexDate", - "rdfs:subClassOf": [ + "@id": "bts:SingleCellCytokineDetectionChipAssay" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:SingleCellDNASequencing" + }, { - "@id": "bts:DiagnosisDate" + "@id": "bts:SingleCellGelElectrophoresis" }, { - "@id": "bts:EnrollmentDate" + "@id": "bts:SingleCellRNA-Sequencing" }, { - "@id": "bts:CollectionDate" + "@id": "bts:SingleMoleculeForsterResonanceEnergyTransfer" }, { - "@id": "bts:BirthDate" - } - ], - "sms:displayName": "Study Index Date", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StudyReuseStatement", - "@type": "rdfs:Class", - "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.", - "rdfs:label": "StudyReuseStatement", - "rdfs:subClassOf": [ + "@id": "bts:SingleNucleotidePolymorphismArray" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Study Reuse Statement", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:StudyDataUseCodes", - "@type": "rdfs:Class", - "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", - "rdfs:label": "StudyDataUseCodes", - "rdfs:subClassOf": [ + "@id": "bts:SingleNucleusRNA-Sequencing" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:Single-CellBCRSequencing" + }, { - "@id": "bts:IRB" + "@id": "bts:Single-CellBarcodeChip" }, { - "@id": "bts:HMB" + "@id": "bts:Single-CellTCRSequencing" }, { - "@id": "bts:PUB" + "@id": "bts:Single-MoleculeTracking" }, { - "@id": "bts:US" + "@id": "bts:SiriusRedStaining" }, { - "@id": "bts:NPOA" + "@id": "bts:SizeExclusionChromatography" }, { - "@id": "bts:COL" + "@id": "bts:Small-AngleX-rayScattering" }, { - "@id": "bts:NCU" + "@id": "bts:SoftAgarAssay" }, { - "@id": "bts:NPUNCU" + "@id": "bts:SouthernBlotting" }, { - "@id": "bts:RS" + "@id": "bts:Spectroscopy" }, { - "@id": "bts:TS" + "@id": "bts:StatisticalModeling" }, { - "@id": "bts:NRES" + "@id": "bts:StimulatedEmissionDepletionMicroscopy" }, { - "@id": "bts:NPU" + "@id": "bts:StimulatedRamanScattering" }, { - "@id": "bts:DUM" + "@id": "bts:StochasticOpticalReconstructionMicroscopy" }, { - "@id": "bts:POA" + "@id": "bts:Super-ResolutionMicroscopy" }, { - "@id": "bts:MOR" + "@id": "bts:SurfacePlasmonResonance" }, { - "@id": "bts:GSO" + "@id": "bts:SurveyorNucleaseAssay" }, { - "@id": "bts:RTN" + "@id": "bts:SynaptophysinStainingMethod" }, { - "@id": "bts:CC" + "@id": "bts:SyntheticGeneticArray" }, { - "@id": "bts:NMDS" + "@id": "bts:TAB-Seq" }, { - "@id": "bts:IS" + "@id": "bts:TCRSequencing" }, { - "@id": "bts:GS" + "@id": "bts:TIRFMicroscopy" }, { - "@id": "bts:DS" + "@id": "bts:TRAPStaining" }, { - "@id": "bts:GRU" + "@id": "bts:TUNELassay" }, { - "@id": "bts:PS" - } - ], - "sms:displayName": "Study Data Use Codes", - "sms:required": "sms:false", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:StudyLicense", - "@type": "rdfs:Class", - "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.", - "rdfs:label": "StudyLicense", - "rdfs:subClassOf": [ + "@id": "bts:TandemMassSpectrometry" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:TandemMassTagging" + }, { - "@id": "bts:CCBY3.0" + "@id": "bts:TargetEngagementAssay" }, { - "@id": "bts:CCBY4.0" + "@id": "bts:TargetedGenomeSequencing" }, { - "@id": "bts:CCBY-NC4.0" + "@id": "bts:TargetedTranscriptomeSequencing" }, { - "@id": "bts:CCBY-NC3.0" + "@id": "bts:ThermalShiftAssay" }, { - "@id": "bts:CCBY-SA4.0" + "@id": "bts:Thin-LayerChromatography" }, { - "@id": "bts:CCBY-NC-SA4.0" - } - ], - "sms:displayName": "Study License", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StudySourceGeography", - "@type": "rdfs:Class", - "rdfs:comment": "The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.", - "rdfs:label": "StudySourceGeography", - "rdfs:subClassOf": [ + "@id": "bts:TilingArray" + }, { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ + "@id": "bts:TimeLapseMicroscopy" + }, { - "@id": "bts:AD" + "@id": "bts:Time-CorrelatedSinglePhotonCounting" }, { - "@id": "bts:AE" + "@id": "bts:TissueEngineering" }, { - "@id": "bts:AF" + "@id": "bts:TissueMicroarray" }, { - "@id": "bts:AG" + "@id": "bts:TotalInternalReflectionFluorescenceMicroscopy" }, { - "@id": "bts:AI" + "@id": "bts:TractionForceMicroscopy" }, { - "@id": "bts:AL" + "@id": "bts:TransmissionElectronMicroscopy" }, { - "@id": "bts:AM" + "@id": "bts:TranswellAssay" }, { - "@id": "bts:AO" + "@id": "bts:UPLC-MSMS" }, { - "@id": "bts:AQ" + "@id": "bts:UVPhotocrosslinking" }, { - "@id": "bts:AR" + "@id": "bts:Unspecified" }, { - "@id": "bts:AS" + "@id": "bts:VibrationalSpectroscopy" }, { - "@id": "bts:AT" + "@id": "bts:VirusPlaqueAssay" }, { - 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Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetSpecies", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:AfricanBushElephant" }, { - "@id": "bts:GW" + "@id": "bts:Armadillo" }, { - "@id": "bts:GY" + "@id": "bts:AsianElephant" }, { - "@id": "bts:HK" + "@id": "bts:Boar" }, { - "@id": "bts:HM" + "@id": "bts:Cat" }, { - "@id": "bts:HN" + "@id": "bts:Chicken" }, { - "@id": "bts:HR" + "@id": "bts:Cow" }, { - "@id": "bts:HT" + "@id": "bts:Dog" }, { - "@id": "bts:HU" + "@id": "bts:Escherichiacoli" }, { - "@id": "bts:ID" + "@id": "bts:GuineaPig" }, { - "@id": "bts:IE" + "@id": "bts:Horse" }, { - "@id": "bts:IL" + "@id": "bts:Human" }, { - "@id": "bts:IM" + "@id": "bts:HumanPatient" }, { - "@id": "bts:IN" + "@id": "bts:HumanCellLine" }, { - "@id": "bts:IO" + "@id": "bts:Mouse" }, { - "@id": "bts:IQ" + "@id": "bts:Multispecies" }, { - "@id": "bts:IR" + "@id": "bts:NotApplicable" }, { - "@id": "bts:IS" + "@id": "bts:Opossum" }, { - "@id": "bts:IT" + "@id": "bts:Rabbit" }, { - "@id": "bts:JE" + "@id": "bts:Rat" }, { - "@id": "bts:JM" + "@id": "bts:Rhesusmonkey" }, { - "@id": "bts:JO" + "@id": "bts:Sheep" }, { - "@id": "bts:JP" + "@id": "bts:Trichoplaxadhaerens" }, { - "@id": "bts:KE" + "@id": "bts:Unknown" }, { - "@id": "bts:KG" + "@id": "bts:Unspecified" }, { - "@id": "bts:KH" + "@id": "bts:Worm" }, { - "@id": "bts:KI" + "@id": "bts:Yeast" }, { - "@id": "bts:KM" + "@id": "bts:FruitFly" }, { - "@id": "bts:KN" + "@id": "bts:Zebrafish" + } + ], + "sms:displayName": "DSP Dataset Species", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:DSPDatasetTumorType", + "@type": "rdfs:Class", + "rdfs:comment": "The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetTumorType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:CutaneousMelanoma" }, { - "@id": "bts:KP" + "@id": "bts:AcinarCellCarcinoma" }, { - "@id": "bts:KR" + "@id": "bts:AcuteLymphoblasticLeukemia" }, { - "@id": "bts:KW" + "@id": "bts:AcuteMonocyticLeukemia" }, { - "@id": "bts:KY" + "@id": "bts:AcuteMyeloidLeukemia" }, { - "@id": "bts:KZ" + "@id": "bts:AcutePromyelocyticLeukemia" }, { - "@id": "bts:LA" + "@id": "bts:Adenocarcinoma" }, { - "@id": "bts:LB" + "@id": "bts:Angiosarcoma" }, { - "@id": "bts:LC" + "@id": "bts:Astrocytoma" }, { - "@id": "bts:LI" + "@id": "bts:AtypicalTeratoid/RhabdoidTumor" }, { - "@id": "bts:LK" + "@id": "bts:BAcuteLymphoblasticLeukemia" }, { - "@id": "bts:LR" + "@id": "bts:B-CellNon-HodgkinLymphoma" }, { - "@id": "bts:LS" + "@id": "bts:BarrettEsophagus" }, { - "@id": "bts:LT" + "@id": "bts:BasalCellNeoplasm" }, { - 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"@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MC", + "sms:displayName": "DSP Number of Samples", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:MD", + "@id": "bts:DSPNumberofParticipants", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MD", + "rdfs:comment": "The number of individuals or model organisms from which samples were collected to generate the dataset.", + "rdfs:label": "DSPNumberofParticipants", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MD", + "sms:displayName": "DSP Number of Participants", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:ME", + "@id": "bts:DSPStorageSize", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ME", + "rdfs:comment": "The expected total storage space required for the dataset in gigabytes (GB)", + "rdfs:label": "DSPStorageSize", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ME", + "sms:displayName": "DSP Storage Size", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "num" + ] }, { - "@id": "bts:MG", + "@id": "bts:DSPDatasetDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MG", + "rdfs:comment": "A text description of the files contained in this dataset.", + "rdfs:label": "DSPDatasetDescription", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MG", + "sms:displayName": "DSP Dataset Description", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:MH", + "@id": "bts:DSPPlannedUploadDate", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MH", + "rdfs:comment": "A non-binding, estimated date by which the files are expected to be uploaded to a repository.", + "rdfs:label": "DSPPlannedUploadDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MH", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "DSP Planned Upload Date", + "sms:required": "sms:true", + "sms:validationRules": [ + "date" + ] }, { - "@id": "bts:MK", + "@id": "bts:DSPPlannedReleaseDate", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MK", + "rdfs:comment": "The projected date that marks the end of any requested or required sharing embargo for the dataset.", + "rdfs:label": "DSPPlannedReleaseDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MK", + "sms:displayName": "DSP Planned Release Date", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "date" + ] }, { - "@id": "bts:ML", + "@id": "bts:DSPDataUseCodes", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ML", + "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", + "rdfs:label": "DSPDataUseCodes", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ML", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MM", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MM", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MN", - "rdfs:subClassOf": [ + "@id": "bts:IRB" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MO", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MO", - "rdfs:subClassOf": [ + "@id": "bts:HMB" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MP", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MP", - "rdfs:subClassOf": [ + "@id": "bts:PUB" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MP", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MQ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MQ", - "rdfs:subClassOf": [ + "@id": "bts:US" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MQ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MR", - "rdfs:subClassOf": [ + "@id": "bts:NPOA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MR", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MS", - "rdfs:subClassOf": [ + "@id": "bts:COL" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MT", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MT", - "rdfs:subClassOf": [ + "@id": "bts:NCU" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MT", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MU", - "rdfs:subClassOf": [ + "@id": "bts:NPUNCU" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MV", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MV", - "rdfs:subClassOf": [ + "@id": "bts:RS" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MV", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MW", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MW", - "rdfs:subClassOf": [ + "@id": "bts:TS" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MW", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MY", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MY", - "rdfs:subClassOf": [ + "@id": "bts:NRES" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MY", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MZ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MZ", - "rdfs:subClassOf": [ + "@id": "bts:NPU" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MZ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NA", - "rdfs:subClassOf": [ + "@id": "bts:DUM" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NC", - "rdfs:subClassOf": [ + "@id": "bts:POA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NE", - "rdfs:subClassOf": [ + "@id": "bts:MOR" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NF", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NF", - "rdfs:subClassOf": [ + "@id": "bts:GSO" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:RTN" + }, + { + "@id": "bts:CC" + }, + { + "@id": "bts:NMDS" + }, + { + "@id": "bts:IS" + }, + { + "@id": "bts:GS" + }, + { + "@id": "bts:DS" + }, + { + "@id": "bts:GRU" + }, + { + "@id": "bts:PS" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NF", + "sms:displayName": "DSP Data Use Codes", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:NG", + "@id": "bts:DSPIRBForm", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NG", + "rdfs:comment": "The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset", + "rdfs:label": "DSPIRBForm", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NG", + "sms:displayName": "DSP IRB Form", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "regex match syn\\d+" + ] }, { - "@id": "bts:NI", + "@id": "bts:DSPDatasetDestination", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NI", + "rdfs:comment": "An identifier representing the repository in which this dataset is intended to be held for long term preservation.", + "rdfs:label": "DSPDatasetDestination", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NI", + "sms:displayName": "DSP Dataset Destination", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:NL", + "@id": "bts:DSPDatasetMetadata", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NL", + "rdfs:comment": "The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.", + "rdfs:label": "DSPDatasetMetadata", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NL", + "sms:displayName": "DSP Dataset Metadata", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:NO", + "@id": "bts:DSPDatasetGrantNumber", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NO", + "rdfs:comment": "Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.", + "rdfs:label": "DSPDatasetGrantNumber", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NP", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NP", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ + { + "@id": "bts:Affiliated/Non-GrantAssociated" + }, + { + "@id": "bts:CA184897" + }, + { + "@id": "bts:CA184898" + }, + { + "@id": "bts:CA188388" + }, + { + "@id": "bts:CA193313" + }, + { + "@id": "bts:CA193417" + }, + { + "@id": "bts:CA193419" + }, + { + "@id": "bts:CA193461" + }, + { + "@id": "bts:CA193489" + }, + { + "@id": "bts:CA195469" + }, + { + "@id": "bts:CA199315" + }, + { + "@id": "bts:CA202123" + }, + { + "@id": "bts:CA202144" + }, + { + "@id": "bts:CA202177" + }, + { + "@id": "bts:CA202229" + }, + { + "@id": "bts:CA202241" + }, + { + "@id": "bts:CA209891" + }, + { + "@id": "bts:CA209923" + }, + { + "@id": "bts:CA209971" + }, + { + "@id": "bts:CA209975" + }, + { + "@id": "bts:CA209978" + }, + { + "@id": "bts:CA209988" + }, + { + "@id": "bts:CA209992" + }, + { + "@id": "bts:CA209997" + }, + { + "@id": "bts:CA210152" + }, + { + "@id": "bts:CA210173" + }, + { + "@id": "bts:CA210180" + }, + { + "@id": "bts:CA210181" + }, + { + "@id": "bts:CA210184" + }, + { + "@id": "bts:CA210190" + }, + { + "@id": "bts:CA214282" + }, + { + "@id": "bts:CA214292" + }, + { + "@id": "bts:CA214297" + }, + { + "@id": "bts:CA214300" + }, + { + "@id": "bts:CA214354" + }, + { + "@id": "bts:CA214369" + }, + { + "@id": "bts:CA214381" + }, + { + "@id": "bts:CA214411" + }, + { + "@id": "bts:CA215709" + }, + { + "@id": "bts:CA215794" + }, + { + "@id": "bts:CA215798" + }, + { + "@id": "bts:CA215845" + }, + { + "@id": "bts:CA215848" + }, + { + "@id": "bts:CA217297" + }, + { + "@id": "bts:CA217376" + }, + { + "@id": "bts:CA217377" + }, + { + "@id": "bts:CA217378" + }, + { + "@id": "bts:CA217450" + }, + { + "@id": "bts:CA217456" + }, + { + "@id": "bts:CA217514" + }, + { + "@id": "bts:CA217613" + }, + { + "@id": "bts:CA217617" + }, + { + "@id": "bts:CA217655" + }, + { + "@id": "bts:CA220378" + }, + { + "@id": "bts:CA223976" + }, + { + "@id": "bts:CA224012" + }, + { + "@id": "bts:CA224013" + }, + { + "@id": "bts:CA224044" + }, + { + "@id": "bts:CA225088" + }, + { + "@id": "bts:CA225566" + }, + { + "@id": "bts:CA227136" + }, + { + "@id": "bts:CA227544" + }, + { + "@id": "bts:CA227550" + }, + { + "@id": "bts:CA228608" + }, + { + "@id": "bts:CA228963" + }, + { + "@id": "bts:CA231978" + }, + { + "@id": "bts:CA232137" + }, + { + "@id": "bts:CA232161" + }, + { + "@id": "bts:CA232209" + }, + { + "@id": "bts:CA232216" + }, + { + "@id": "bts:CA232382" + }, + { + "@id": "bts:CA232517" + }, + { + "@id": "bts:CA234787" + }, + { + "@id": "bts:CA235747" + }, + { + "@id": "bts:CA238475" + }, + { + "@id": "bts:CA238720" + }, + { + "@id": "bts:CA238728" + }, + { + "@id": "bts:CA240301" + }, + { + "@id": "bts:CA241137" + }, + { + "@id": "bts:CA241927" + }, + { + "@id": "bts:CA243004" + }, + { + "@id": "bts:CA243007" + }, + { + "@id": "bts:CA243072" + }, + { + "@id": "bts:CA243073" + }, + { + "@id": "bts:CA243075" + }, + { + "@id": "bts:CA244100" + }, + { + "@id": "bts:CA244101" + }, + { + "@id": "bts:CA244107" + }, + { + "@id": "bts:CA244109" + }, + { + "@id": "bts:CA245313" + }, + { + "@id": "bts:CA248890" + }, + { + "@id": "bts:CA249799" + }, + { + "@id": "bts:CA250040" + }, + { + "@id": "bts:CA250044" + }, + { + "@id": "bts:CA250046" + }, + { + "@id": "bts:CA250481" + }, + { + "@id": "bts:CA251443" + }, + { + "@id": "bts:CA253248" + }, + { + "@id": "bts:CA253472" + }, + { + "@id": "bts:CA253540" + }, + { + "@id": "bts:CA253547" + }, + { + "@id": "bts:CA253553" + }, + { + "@id": "bts:CA254200" + }, + { + "@id": "bts:CA254886" + }, + { + "@id": "bts:CA256054" + }, + { + "@id": "bts:CA256481" + }, + { + "@id": "bts:CA260432" + }, + { + "@id": "bts:CA261694" + }, + { + "@id": "bts:CA261701" + }, + { + "@id": "bts:CA261717" + }, + { + "@id": "bts:CA261719" + }, + { + "@id": "bts:CA261822" + }, + { + "@id": "bts:CA261841" + }, + { + "@id": "bts:CA261842" + }, + { + "@id": "bts:CA263001" + }, + { + "@id": "bts:CA264583" + }, + { + "@id": "bts:CA264610" + }, + { + "@id": "bts:CA264611" + }, + { + "@id": "bts:CA264620" + }, + { + "@id": "bts:CA267170" + }, + { + "@id": "bts:CA268069" + }, + { + "@id": "bts:CA268072" + }, + { + "@id": "bts:CA268083" + }, + { + "@id": "bts:CA268084" + }, + { + "@id": "bts:CA271273" + }, + { + "@id": "bts:CA274492" + }, + { + "@id": "bts:CA274494" + }, + { + "@id": "bts:CA274499" + }, + { + "@id": "bts:CA274502" + }, + { + "@id": "bts:CA274509" + }, + { + "@id": "bts:CA275808" + }, + { + "@id": "bts:CA279408" + }, + { + "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NP", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NR", - "rdfs:subClassOf": [ + "@id": "bts:CA290442" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:CA293853" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NR", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "DSP Dataset Grant Number", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:NZ", + "@id": "bts:StudyId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NZ", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "StudyId", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NZ", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:OM", + "@id": "bts:StudydbGaPAccessionId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "OM", + "rdfs:comment": "A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.", + "rdfs:label": "StudydbGaPAccessionId", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "OM", + "sms:displayName": "Study dbGaP Accession Id", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PA", + "@id": "bts:StudyName", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PA", + "rdfs:comment": "Name of the study", + "rdfs:label": "StudyName", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PA", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Name", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PE", + "@id": "bts:StudyDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PE", + "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.", + "rdfs:label": "StudyDescription", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PE", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Description", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PF", + "@id": "bts:StudyInvestigator", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PF", + "rdfs:comment": "Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.", + "rdfs:label": "StudyInvestigator", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PF", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Investigator", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:PG", + "@id": "bts:StudyNumberofParticipants", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PG", + "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.", + "rdfs:label": "StudyNumberofParticipants", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PG", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Study Number of Participants", + "sms:required": "sms:true", + "sms:validationRules": [ + "int" + ] }, { - "@id": "bts:PH", + "@id": "bts:StudyDe-identificationMethodType", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PH", + "rdfs:comment": "General description of the de-identification method. Maps to DUOplus3.", + "rdfs:label": "StudyDe-identificationMethodType", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PH", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PK", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PK", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Manual" + }, + { + "@id": "bts:Semiautomatic" + }, + { + "@id": "bts:Automatic" + }, + { + "@id": "bts:NotApplicable" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PK", - "sms:required": "sms:false", + "sms:displayName": "Study De-identification Method Type", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:PL", + "@id": "bts:StudyDe-identificationMethodDescription", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PL", + "rdfs:comment": "Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.", + "rdfs:label": "StudyDe-identificationMethodDescription", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PL", + "sms:displayName": "Study De-identification Method Description", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PM", + "@id": "bts:StudyDe-identificationMethodSoftware", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PM", + "rdfs:comment": "Software that was used to de-identify the data (if used)", + "rdfs:label": "StudyDe-identificationMethodSoftware", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PM", + "sms:displayName": "Study De-identification Method Software", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PN", + "@id": "bts:StudyIndexDate", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PN", + "rdfs:comment": "The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.", + "rdfs:label": "StudyIndexDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PR", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:DiagnosisDate" + }, + { + "@id": "bts:EnrollmentDate" + }, + { + "@id": "bts:CollectionDate" + }, + { + "@id": "bts:BirthDate" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PR", + "sms:displayName": "Study Index Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PT", + "@id": "bts:StudyReuseStatement", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PT", + "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.", + "rdfs:label": "StudyReuseStatement", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PT", + "sms:displayName": "Study Reuse Statement", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:PW", + "@id": "bts:StudyDataUseCodes", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PW", + "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", + "rdfs:label": "StudyDataUseCodes", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PW", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PY", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PY", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:IRB" + }, + { + "@id": "bts:HMB" + }, + { + "@id": "bts:PUB" + }, + { + "@id": "bts:US" + }, + { + "@id": "bts:NPOA" + }, + { + "@id": "bts:COL" + }, + { + "@id": "bts:NCU" + }, + { + "@id": "bts:NPUNCU" + }, + { + "@id": "bts:RS" + }, + { + "@id": "bts:TS" + }, + { + "@id": "bts:NRES" + }, + { + "@id": "bts:NPU" + }, + { + "@id": "bts:DUM" + }, + { + "@id": "bts:POA" + }, + { + "@id": "bts:MOR" + }, + { + "@id": "bts:GSO" + }, + { + "@id": "bts:RTN" + }, + { + "@id": "bts:CC" + }, + { + "@id": "bts:NMDS" + }, + { + "@id": "bts:IS" + }, + { + "@id": "bts:GS" + }, + { + "@id": "bts:DS" + }, + { + "@id": "bts:GRU" + }, + { + "@id": "bts:PS" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PY", + "sms:displayName": "Study Data Use Codes", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:QA", + "@id": "bts:StudyLicense", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "QA", + "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.", + "rdfs:label": "StudyLicense", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "QA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RE", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:CCBY3.0" + }, + { + "@id": "bts:CCBY4.0" + }, + { + "@id": "bts:CCBY-NC4.0" + }, + { + "@id": "bts:CCBY-NC3.0" + }, + { + "@id": "bts:CCBY-SA4.0" + }, + { + "@id": "bts:CCBY-NC-SA4.0" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RE", + "sms:displayName": "Study License", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:RO", + "@id": "bts:StudySourceGeography", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RO", + "rdfs:comment": "The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.", + "rdfs:label": "StudySourceGeography", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "RO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RU", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ + { + "@id": "bts:AD" + }, + { + "@id": "bts:AE" + }, + { + "@id": "bts:AF" + }, + { + "@id": "bts:AG" + }, + { + "@id": "bts:AI" + }, + { + "@id": "bts:AL" + }, + { + "@id": "bts:AM" + }, + { + "@id": "bts:AO" + }, + { + "@id": "bts:AQ" + }, + { + "@id": "bts:AR" + }, + { + "@id": "bts:AS" + }, + { + "@id": "bts:AT" + }, + { + "@id": "bts:AU" + }, + { + "@id": "bts:AW" + }, + { + "@id": "bts:AX" + }, + { + "@id": "bts:AZ" + }, + { + "@id": "bts:BA" + }, + { + "@id": "bts:BB" + }, + { + "@id": "bts:BD" + }, + { + "@id": "bts:BE" + }, + { + "@id": 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], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TW", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TZ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TZ", - "rdfs:subClassOf": [ + "@id": "bts:ZA" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TZ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:UG", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UG", - "rdfs:subClassOf": [ + "@id": "bts:ZM" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:ZW" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "UG", + "sms:displayName": "Study Source Geography", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:UM", + "@id": "bts:StudyDataPermission", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UM", + "rdfs:comment": "The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.", + "rdfs:label": "StudyDataPermission", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:UY", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UY", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "UY", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:UZ", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "UZ", - "rdfs:subClassOf": [ + "@id": "bts:Agreement" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "UZ", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VA", - "rdfs:subClassOf": [ + "@id": "bts:Attestation" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VC", - "rdfs:subClassOf": [ + "@id": "bts:Award" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:Other" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VC", + "sms:displayName": "Study Data Permission", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:VE", + "@id": "bts:StudyDataTier", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VE", + "rdfs:comment": "The access tier(s) associated with the data in this study. Maps to DUOplus5.", + "rdfs:label": "StudyDataTier", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "VE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VG", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VG", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VG", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VI", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VI", - "rdfs:subClassOf": [ + "@id": "bts:Anonymous" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VI", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VN", - "rdfs:subClassOf": [ + "@id": "bts:Open" + }, { - "@id": "bts:StudySourceGeography" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:VU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "VU", - "rdfs:subClassOf": [ + "@id": "bts:Controlled" + }, { - "@id": "bts:StudySourceGeography" + "@id": "bts:Private" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "VU", + "sms:displayName": "Study Data Tier", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:WF", + "@id": "bts:Manual", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WF", + "rdfs:label": "Manual", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyDe-identificationMethodType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "WF", + "sms:displayName": "Manual", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WS", + "@id": "bts:Semiautomatic", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WS", + "rdfs:label": "Semiautomatic", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyDe-identificationMethodType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "WS", + "sms:displayName": "Semiautomatic", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:YE", + "@id": "bts:Automatic", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "YE", + "rdfs:label": "Automatic", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyDe-identificationMethodType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "YE", + "sms:displayName": "Automatic", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:YT", + "@id": "bts:DiagnosisDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "YT", + "rdfs:label": "DiagnosisDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "YT", + "sms:displayName": "Diagnosis Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ZA", + "@id": "bts:EnrollmentDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ZA", + "rdfs:label": "EnrollmentDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ZA", + "sms:displayName": "Enrollment Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ZM", + "@id": "bts:CollectionDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ZM", + "rdfs:label": "CollectionDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ZM", + "sms:displayName": "Collection Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ZW", + "@id": "bts:BirthDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ZW", + "rdfs:label": "BirthDate", "rdfs:subClassOf": [ { - "@id": "bts:StudySourceGeography" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ZW", + "sms:displayName": "Birth Date", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -322461,74 +327213,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:Anonymous", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Anonymous", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Anonymous", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Open", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Open", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Open", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Controlled", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Controlled", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Controlled", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Private", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Private", - "rdfs:subClassOf": [ - { - "@id": "bts:StudyDataTier" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Private", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Theme", "@type": "rdfs:Class", @@ -323671,23 +328355,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:Contributor", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Contributor", - "rdfs:subClassOf": [ - { - "@id": "bts:ToolEntityRole" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Contributor", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Support", "@type": "rdfs:Class", From 44e9b1ae320f9b446fd802e8d84cdc371023a421 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 14 Apr 2025 15:16:04 -0700 Subject: [PATCH 099/106] Update annotationProperty.csv Remove list of valid values from DSP Dataset File Formats and adjust description. --- modules/sharingPlans/annotationProperty.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index 34c2f7dd..b22aff9b 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -6,7 +6,7 @@ DSP Dataset Assay,"The type of data contained in this group of files. Multiple v DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +DSP Dataset File Formats,"The list of extensions (e.g., csv, fastq, geojson, qpath, etc.) associated with files that should be included in the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num From 98109a269c0c936a84b187841d592e9ce79fd528 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 14 Apr 2025 15:16:36 -0700 Subject: [PATCH 100/106] Update mapping.yaml Remove mapping for DSP Dataset File Formats --- modules/mapping.yaml | 2 -- 1 file changed, 2 deletions(-) diff --git a/modules/mapping.yaml b/modules/mapping.yaml index da78fe9b..7e1a583e 100644 --- a/modules/mapping.yaml +++ b/modules/mapping.yaml @@ -69,8 +69,6 @@ dataset: src: shared/tumorType.csv sharingPlans: - - name: DSP Dataset File Formats - src: shared/dataset_file_format.csv - name: DSP Dataset Species src: shared/dataset_species.csv - name: DSP Dataset Grant Number From b96adf811937f8bf05088fabb551bd62d0927798 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 14 Apr 2025 15:34:34 -0700 Subject: [PATCH 101/106] Update release_workflow.sh Fix description of outputs --- release_workflow.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/release_workflow.sh b/release_workflow.sh index 2cc0c53e..9b62f814 100644 --- a/release_workflow.sh +++ b/release_workflow.sh @@ -6,7 +6,7 @@ #- update controlled vocabulary sets listed in annotationProperty.csv files and the all_valid_values.csv #- build a model CSV and convert to JSON-LD, using schematic #- create CSV template files, saving them in a new 'template' folder -#- generate Google Sheet links and print to terminal +#- generate Google Sheet links and save them in a local file 'release_output.txt' #Intended for use when creating a data model release package. From ad513151d4318399dea4fdcb73ec76d34e0019a7 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 14 Apr 2025 15:34:46 -0700 Subject: [PATCH 102/106] Update mc2.model.csv --- mc2.model.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/mc2.model.csv b/mc2.model.csv index 99136dd3..ecf8ee4c 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -465,7 +465,7 @@ DSP Dataset Assay,"The type of data contained in this group of files. Multiple v DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +DSP Dataset File Formats,"The list of extensions (e.g., csv, fastq, geojson, qpath, etc.) associated with files that should be included in the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num From 652bca25620018e915176312aabc70dc599a169c Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Mon, 14 Apr 2025 15:35:19 -0700 Subject: [PATCH 103/106] build JSON-LD schematic 24.12.1 --- mc2.model.jsonld | 484 +---------------------------------------------- 1 file changed, 1 insertion(+), 483 deletions(-) diff --git a/mc2.model.jsonld b/mc2.model.jsonld index fe439b90..15bbdc63 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -30282,9 +30282,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:DatasetTissue" }, @@ -216695,9 +216692,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:DatasetTissue" }, @@ -229042,9 +229036,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229065,9 +229056,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229089,9 +229077,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229118,9 +229103,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229146,9 +229128,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229169,9 +229148,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229192,9 +229168,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229216,9 +229189,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229244,9 +229214,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229267,9 +229234,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229290,9 +229254,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229314,9 +229275,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229343,9 +229301,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229372,9 +229327,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229400,9 +229352,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229423,9 +229372,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229446,9 +229392,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229469,9 +229412,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229492,9 +229432,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229516,9 +229453,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229545,9 +229479,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229573,9 +229504,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229597,9 +229525,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229626,9 +229551,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229658,9 +229580,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229686,9 +229605,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229710,9 +229626,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229739,9 +229652,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229773,9 +229683,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229796,9 +229703,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229820,9 +229724,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229848,9 +229749,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229872,9 +229770,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229900,9 +229795,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -229924,9 +229816,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229953,9 +229842,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -229981,9 +229867,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230005,9 +229888,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230034,9 +229914,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230062,9 +229939,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230086,9 +229960,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230114,9 +229985,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230137,9 +230005,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230160,9 +230025,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230183,9 +230045,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230206,9 +230065,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230229,9 +230085,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230252,9 +230105,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230275,9 +230125,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230299,9 +230146,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230328,9 +230172,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230357,9 +230198,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230386,9 +230224,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230414,9 +230249,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230438,9 +230270,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230466,9 +230295,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230489,9 +230315,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230513,9 +230336,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230542,9 +230362,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230570,9 +230387,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230593,9 +230407,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230616,9 +230427,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230639,9 +230447,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230662,9 +230467,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230685,9 +230487,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230709,9 +230508,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230738,9 +230534,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -230766,9 +230559,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230789,9 +230579,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230818,9 +230605,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230841,9 +230625,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230864,9 +230645,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230887,9 +230665,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230910,9 +230685,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230933,9 +230705,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230956,9 +230725,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -230979,9 +230745,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -231002,9 +230765,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -324819,7 +324579,7 @@ { "@id": "bts:DSPDatasetFileFormats", "@type": "rdfs:Class", - "rdfs:comment": "A list of file formats associated with the dataset. Multiple values permitted, comma separated.", + "rdfs:comment": "The list of extensions (e.g., csv, fastq, geojson, qpath, etc.) associated with files that should be included in the dataset. Multiple values permitted, comma separated.", "rdfs:label": "DSPDatasetFileFormats", "rdfs:subClassOf": [ { @@ -324829,248 +324589,6 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:AVI" - }, - { - "@id": "bts:BAI" - }, - { - "@id": "bts:BAM" - }, - { - "@id": "bts:BED" - }, - { - "@id": "bts:CDS" - }, - { - "@id": "bts:CHP" - }, - { - "@id": "bts:COOL" - }, - { - "@id": "bts:CSV" - }, - { - "@id": "bts:DAE" - }, - { - "@id": "bts:DB" - }, - { - "@id": "bts:DSStore" - }, - { - "@id": "bts:FASTA" - }, - { - "@id": "bts:FASTQ" - }, - { - "@id": "bts:FCS" - }, - { - "@id": "bts:FIG" - }, - { - "@id": "bts:FREQ" - }, - { - "@id": "bts:GCG" - }, - { - "@id": "bts:GCT" - }, - { - "@id": "bts:GCTx" - }, - { - "@id": "bts:GFF3" - }, - { - "@id": "bts:GTF" - }, - { - "@id": "bts:GZIPFormat" - }, - { - "@id": "bts:HDF" - }, - { - "@id": "bts:HDF5" - }, - { - "@id": "bts:HTML" - }, - { - "@id": "bts:IDAT" - }, - { - "@id": "bts:JPG" - }, - { - "@id": "bts:JSON" - }, - { - "@id": "bts:LIF" - }, - { - "@id": "bts:MAP" - }, - { - "@id": "bts:MAT" - }, - { - "@id": "bts:MATLABscript" - }, - { - "@id": "bts:MSF" - }, - { - "@id": "bts:MTX" - }, - { - "@id": "bts:PDF" - }, - { - "@id": "bts:PNG" - }, - { - "@id": "bts:PZFX" - }, - { - "@id": "bts:PythonScript" - }, - { - "@id": "bts:RFileFormat" - }, - { - "@id": "bts:RAW" - }, - { - "@id": "bts:RDS" - }, - { - "@id": "bts:ROUT" - }, - { - "@id": "bts:RPROJ" - }, - { - "@id": "bts:RTF" - }, - { - "@id": "bts:SGI" - }, - { - "@id": "bts:SRA" - }, - { - "@id": "bts:STAT" - }, - { - "@id": "bts:TARFormat" - }, - { - "@id": "bts:TDF" - }, - { - "@id": "bts:TIFF" - }, - { - "@id": "bts:TSV" - }, - { - "@id": "bts:TXT" - }, - { - "@id": "bts:VCF" - }, - { - "@id": "bts:WIG" - }, - { - "@id": "bts:XML" - }, - { - "@id": "bts:ZIP" - }, - { - "@id": "bts:Bed12" - }, - { - "@id": "bts:Bedgraph" - }, - { - "@id": "bts:Cel" - }, - { - "@id": "bts:Cloupe" - }, - { - "@id": "bts:Docx" - }, - { - "@id": "bts:MzIdentML" - }, - { - "@id": "bts:MzXML" - }, - { - "@id": "bts:Pptx" - }, - { - "@id": "bts:Rcc" - }, - { - "@id": "bts:Xls" - }, - { - "@id": "bts:Xlsx" - }, - { - "@id": "bts:MGF" - }, - { - "@id": "bts:BIGWIG" - }, - { - "@id": "bts:H5AD" - }, - { - "@id": "bts:H5" - }, - { - "@id": "bts:SF" - }, - { - "@id": "bts:PKL" - }, - { - "@id": "bts:BPM" - }, - { - "@id": "bts:Unspecified" - }, - { - "@id": "bts:PendingAnnotation" - }, - { - "@id": "bts:Maf" - }, - { - "@id": "bts:CLS" - }, - { - "@id": "bts:SCN" - }, - { - "@id": "bts:SVS" - } - ], "sms:displayName": "DSP Dataset File Formats", "sms:required": "sms:false", "sms:validationRules": [ From 2fd61ca78833173aa4c4d154538369a299605d95 Mon Sep 17 00:00:00 2001 From: Verena Chung <9377970+vpchung@users.noreply.github.com> Date: Mon, 21 Apr 2025 10:02:14 -0700 Subject: [PATCH 104/106] [docs] Docs format (#192) * standardize format of model docs * remove unnecessary bolding from headers * remove extra whitespace from table markdown --- docs/home/tutorial.md | 32 ++++++++++++++--------- docs/model/DataDSP.md | 34 ++++++++++++++---------- docs/model/dataset.md | 40 ++++++++++++++++------------- docs/model/education.md | 46 +++++++++++++++++++-------------- docs/model/file.md | 40 +++++++++++++++++------------ docs/model/grant.md | 50 +++++++++++++++++++----------------- docs/model/person.md | 54 ++++++++++++++++++++++----------------- docs/model/publication.md | 51 +++++++++++++++++++----------------- docs/model/study.md | 46 ++++++++++++++++++++------------- docs/model/tool.md | 44 ++++++++++++++++++------------- 10 files changed, 253 insertions(+), 184 deletions(-) diff --git a/docs/home/tutorial.md b/docs/home/tutorial.md index ca76747e..146aca2c 100644 --- a/docs/home/tutorial.md +++ b/docs/home/tutorial.md @@ -5,23 +5,29 @@ This tutorial will guide you through using the templates provided in the Data Mo Access the Data Curator App here: [Data Curator App](https://dca.app.sagebionetworks.org/) -## **Step 1: Select a Data Coordination Center (DCC)** +## Step 1: Select a Data Coordination Center (DCC)** + After launching the app, choose the relevant DCC from the dropdown menu. For example, select **DCA Demo**. ![Step 1: Select a DCC](../assets/dca-tutorial/select_dcc.png) -## **Step 2: Choose a Project** + +## Step 2: Choose a Project + Select the project you want to work with, such as **FAIR Demo Data**. ![Step 2: Select a Project](../assets/dca-tutorial/select_project.png) -## **Step 3: Select a Folder** +## Step 3: Select a Folder + Choose the appropriate folder for your data. For example, select **A Biospecimen**. ![Step 3: Select a Folder](../assets/dca-tutorial/select_folder.png) -## **Step 4: Select a Template** + +## Step 4: Select a Template + Choose a template that matches the type of data you're working with. The templates available in this app align with the templates provided in the Data Models section of this documentation. Download the selected template to your computer. ![Step 4: Select a Template](../assets/dca-tutorial/select_template.png) @@ -32,13 +38,13 @@ This will open a CSV file in a Google Sheet on your computer. You can save this ![Step 4: Biospecimen Template](../assets/dca-tutorial/dca_demo_biospecimen_template.png) +## Step 5: Populate the Template with Your Data -## **Step 5: Populate the Template with Your Data** Open the downloaded CSV template and fill in your data. Use the descriptions and examples provided in the Data Models section to guide you. Below is an example of a completed **Dataset** template: -| **Dataset Name** | **Dataset Alias** | **Dataset Description** | **Dataset Url** | **Dataset Assay** | **Dataset Species** | **Dataset Tumor Type** | **Dataset Tissue** | **Dataset File Formats** | **Dataset Grant Number** | **Dataset Pubmed Id** | **Dataset View** | **DatasetView_id** | -|-------------------------------------------|-------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------|------------------|---------------------|-------------------------|-------------------|---------------------------|--------------------------|------------------------|-----------------|---------------------------| -| RNA Sequencing of Lung Cancer Samples 2021 | GSE56789 | This dataset contains RNA sequencing data from 200 lung cancer samples... | [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789) | RNA Sequencing | Homo sapiens | Glioblastoma | Lung | CSV, PDF | CA209971 | Not applicable | Table | DatasetView_12345 | +| **DatasetName** | **DatasetAlias** | **DatasetDescription** | **DatasetUrl** | **DatasetAssay** | **DatasetSpecies** | **DatasetTumorType** | **DatasetTissue** | **DatasetFileFormats** | **DatasetGrantNumber** | **DatasetPubmedId** | **DatasetView** | **DatasetView_id** | +|---|---|---|---|---|---|---|---|---|---|---|---|---| +| RNASequencingofLungCancerSamples2021 | GSE56789 | This dataset contains RNA sequencing data from 200 lung cancer samples... | [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789) | RNASequencing | Homo sapiens | Glioblastoma | Lung | CSV,PDF | CA209971 | Not applicable | | | !!!important Please note that to successfully upload this template, you will need to input the following for steps 1-4: @@ -50,17 +56,20 @@ Open the downloaded CSV template and fill in your data. Use the descriptions and -## **Step 6: Upload and Validate Metadata** +## Step 6: Upload and Validate Metadata + Upload the completed CSV template back into the Data Curator App and proceed to validate your metadata. The app will check for errors and inconsistencies. ![Step 6: Upload CSV](../assets/dca-tutorial/validate_submit_metadata.png) -## **Benefits of Using the Data Curator App** + +## Benefits of Using the Data Curator App - **Ease of Use:** Templates are pre-structured, making it easy to input your data correctly. - **Metadata Consistency:** The app validates your data to ensure compliance with predefined models and metadata standards. - **Efficient Submission:** By using the templates and app, you reduce the risk of errors during submission to data portals like the [**Cancer Complexity Knowledge Portal**](https://www.cancercomplexity.synapse.org/). -## **Next Steps** + +## Next Steps Now that you've learned how to use the Data Curator App with templates, explore other data models to match the specific type of data you're working with. Each template is designed to help you organize and submit structured metadata for various research elements. @@ -77,4 +86,3 @@ Now that you've learned how to use the Data Curator App with templates, explore | Tool Data Model | Use this to describe tools, software, or resources used for data collection, analysis, or visualization. | [Tool Data Model](../model/tool.md) | Explore these links to find the right template for your data and continue with your submissions. - diff --git a/docs/model/DataDSP.md b/docs/model/DataDSP.md index 279f36d7..5cbb5a62 100644 --- a/docs/model/DataDSP.md +++ b/docs/model/DataDSP.md @@ -2,10 +2,14 @@ A **Dataset Sharing Plan (DataDSP)** is a structured framework used to document This page outlines the key attributes required to create a data sharing plan, guiding users on how to structure and share datasets while adhering to best practices. It also demonstrates how attributes like planned upload dates, file formats, and grant numbers are used to ensure compliance with both internal and external data-sharing policies. -## **Why You Should Contribute DataDSP Entries** + +## Why You Should Contribute DataDSP Entries + Contributing DataDSP entries benefits your research and projects by improving data accessibility, organization, and compliance. With complete entries, you enhance collaboration opportunities, simplify data sharing, and increase the impact and visibility of your datasets in research communities. By ensuring your data is properly documented and discoverable, you also reduce administrative burdens during audits, grant reporting, and data requests. -### **Who Should Be Contributing DataDSP Entries?** + +### Who Should Be Contributing DataDSP Entries? + 1. **Principal Investigators (PIs)** – Gain recognition for your research by making your data easily accessible and well-documented, improving citation potential and collaboration opportunities. 2. **Data Managers** – Ensure efficient data organization and compliance, minimizing time spent addressing data queries or audits. 3. **Research Coordinators** – Streamline project workflows by contributing accurate metadata, reducing delays in data sharing and project reporting. @@ -13,24 +17,26 @@ Contributing DataDSP entries benefits your research and projects by improving da ## Download Template + Download the [DataDSP CSV template](https://github.com/mc2-center/data-models/raw/main/templates/DataDSP.csv) for streamlined data entry, ensuring that all required fields are filled out. ## Example Data Entry + The table below includes sample values to demonstrate proper attribute usage. -| **Attribute** | **Example Value** | -|-----------------------------|-------------------------------------------------------------------------------------------------------------------------| -| DSP Dataset Name | DSP_Dataset_Lung_Research_2021 | -| DSP Dataset Alias | Syn123456 | -| DSP Dataset Assay | 3D Bioprinting | -| DSP Dataset Species | Asian Elephant | -| DSP Dataset File Formats | CSV, JSON | -| DSP Planned Upload Date | 2022-12-01 | -| DSP Dataset Grant Number | CA209971 | -| DSP Dataset Description | "A quick description of your data sharing plan." | -| DSP Dataset Destination | "/home/user/datasets/dsp_output" | -| DSP Dataset Url | https://www.example.com/dataset/dsp1234 | +| **Attribute** | **Example Value** | +|---|---| +| DSP Dataset Name | DSP_Dataset_Lung_Research_2021 | +| DSP Dataset Alias | Syn123456 | +| DSP Dataset Assay | 3D Bioprinting | +| DSP Dataset Species | Asian Elephant | +| DSP Dataset File Formats | CSV, JSON | +| DSP Planned Upload Date | 2022-12-01 | +| DSP Dataset Grant Number | CA209971 | +| DSP Dataset Description | "A quick description of your data sharing plan." | +| DSP Dataset Destination | "/home/user/datasets/dsp_output" | +| DSP Dataset Url | https://www.example.com/dataset/dsp1234 | ## Full Field Reference diff --git a/docs/model/dataset.md b/docs/model/dataset.md index b1d82556..94df61b3 100644 --- a/docs/model/dataset.md +++ b/docs/model/dataset.md @@ -2,13 +2,16 @@ A **Dataset** refers to a structured collection of data that is organized for an This model outlines key attributes that describe and manage datasets, including metadata about the data type, format, number of samples, and related grant information. By maintaining these attributes, datasets can be efficiently tracked and referenced within data repositories. -## **Why You Should Contribute Dataset Entries** + +## Why You Should Contribute Dataset Entries + Contributing dataset entries ensures that your data is easily discoverable, accurately documented, and compliant with research standards. Well-structured metadata enhances collaboration opportunities, increases data citation potential, and reduces administrative overhead for reporting and compliance. Additionally, dataset entries are required for sharing through the Cancer Complexity Knowledge Portal (CCKP). You can submit dataset entries for data stored both within and outside of Synapse, including repositories like the Gene Expression Omnibus (GEO), Database of Genotypes and Phenotypes (dbGaP), and Zenodo, allowing them to be listed on the CCKP. Well-documented datasets help other researchers and stakeholders effectively use your data, maximizing its long-term impact. -### **Who Should Be Contributing Dataset Entries?** +### Who Should Be Contributing Dataset Entries? + 1. **Principal Investigators (PIs)** – Increase the visibility and impact of your research by contributing properly cataloged datasets, making it easier for others to cite and use your work. 2. **Data Managers** – Improve data organization and retrieval, reducing time spent on requests for data clarification and documentation during audits. 3. **Research Staff** – Simplify project reporting by ensuring that datasets are complete with accurate descriptions, grant associations, and metadata. @@ -16,27 +19,28 @@ You can submit dataset entries for data stored both within and outside of Synaps ## Download Template + You can download the [dataset entry template](https://github.com/mc2-center/data-models/raw/main/templates/DatasetView.csv), which includes all required fields, to streamline the data entry process. ## Example Data Entry -The table below includes sample values to demonstrate proper attribute usage. -| **Attribute** | **Example Value** | -|-------------------------|---------------------------------------------------------------------------------------------------------| -| Dataset Name | RNA Sequencing of Lung Cancer Samples 2021 | -| Dataset Alias | GSE56789 | -| Dataset Description | This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages. | -| Dataset Url | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789 | -| Dataset Assay | RNA Sequencing | -| Dataset Species | Homo sapiens | -| Dataset Tumor Type | Glioblastoma | -| Dataset Tissue | Lung | -| Dataset File Formats | CSV, PDF | -| Dataset Grant Number | CA209971 | -| Dataset Pubmed Id | Not applicable | -| Dataset View | Table | -| DatasetView_id | DatasetView_12345 | +The table below includes sample values to demonstrate proper attribute usage. +| **Attribute** | **Example Value** | +|---|---| +| Dataset Name | RNA Sequencing of Lung Cancer Samples 2021 | +| Dataset Alias | GSE56789 | +| Dataset Description | This dataset contains RNA sequencing data from 200 lung cancer samples, including gene expression profiles and patient clinical data. It is designed to study differential gene expression and mutation burden across tumor stages. | +| Dataset Url | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56789 | +| Dataset Assay | RNA Sequencing | +| Dataset Species | Homo sapiens | +| Dataset Tumor Type | Glioblastoma | +| Dataset Tissue | Lung | +| Dataset File Formats | CSV, PDF | +| Dataset Grant Number | CA209971 | +| Dataset Pubmed Id | Not applicable | +| Dataset View | Table | +| DatasetView_id | DatasetView_12345 | ## Full Field Reference diff --git a/docs/model/education.md b/docs/model/education.md index b5745f44..aa4114c5 100644 --- a/docs/model/education.md +++ b/docs/model/education.md @@ -2,10 +2,14 @@ An **Educational Resource** refers to any material designed to support learning This model defines attributes to describe each resource, including its title, topic, educational level, and usage, to facilitate discovery, sharing, and reuse within educational systems. -## **Why You Should Contribute Educational Resource Entries** + +## Why You Should Contribute Educational Resource Entries + Contributing educational resource entries helps expand access to valuable learning materials and supports knowledge sharing across the research and educational community. By documenting your resources thoroughly, you increase their discoverability, usability, and impact. Well-structured educational entries also provide opportunities for collaboration, curriculum development, and outreach, ensuring your work benefits a broader audience. -### **Who Should Be Contributing Educational Resource Entries?** + +### Who Should Be Contributing Educational Resource Entries? + 1. **Educators and Trainers** – Increase the reach of your courses, workshops, and materials by making them easily accessible and categorized for learners. 2. **Curriculum Developers** – Contribute structured content that aligns with learning objectives and supports interdisciplinary research education. 3. **Researchers** – Share resources like tutorials, research guides, and recorded presentations to help others understand your methods and findings. @@ -14,28 +18,32 @@ Contributing educational resource entries helps expand access to valuable learni ## Download Template + Use the [educational resource template](https://github.com/mc2-center/data-models/raw/main/templates/EducationalResource.csv) to streamline your data entry process. The template contains pre-defined required fields. + ## Example Data Entry + The table below includes sample values to demonstrate proper attribute usage. -| **Attribute** | **Example Value** | -|----------------------------|-------------------------------------------------------------------------------------------------------------| -| Educational Resource | Online Tutoring Platform | -| Resource Title | Introduction to Biology | -| Resource Link | [https://www.example.com/resource_page.html](https://www.example.com/resource_page.html) | -| Resource Topic | Metabolism | -| Resource Activity Type | Simulation | -| Resource Primary Format | Video | -| Resource Intended Use | Curriculum/Instruction | -| Resource Primary Audience | Teacher | -| Resource Educational Level | High School | -| Resource Description | This comprehensive e-book offers insights into the world of Biology | -| Resource Origin Institution| Smithsonian Institution | -| Resource Language | en | -| Resource Contributors | John Smith, Jane Doe, XYZ Corporation | -| Resource Grant Number | CA217655 | -| EducationalResource_id | ER_4567 | +| **Attribute** | **Example Value** | +|---|---| +| Educational Resource | Online Tutoring Platform | +| Resource Title | Introduction to Biology | +| Resource Link | [https://www.example.com/resource_page.html](https://www.example.com/resource_page.html) | +| Resource Topic | Metabolism | +| Resource Activity Type | Simulation | +| Resource Primary Format | Video | +| Resource Intended Use | Curriculum/Instruction | +| Resource Primary Audience | Teacher | +| Resource Educational Level | High School | +| Resource Description | This comprehensive e-book offers insights into the world of Biology | +| Resource Origin Institution | Smithsonian Institution | +| Resource Language | en | +| Resource Contributors | John Smith, Jane Doe, XYZ Corporation | +| Resource Grant Number | CA217655 | +| EducationalResource_id | ER_4567 | + ## Full Field Reference diff --git a/docs/model/file.md b/docs/model/file.md index c073204b..178f37a0 100644 --- a/docs/model/file.md +++ b/docs/model/file.md @@ -2,10 +2,14 @@ A **File** represents a single data unit within a dataset, such as a document, s The attributes in this model describe key metadata about each file, including its format, assay type, species, and associated dataset. These details help maintain file traceability and usability within data repositories. -## **Why You Should Contribute File Entries** + +## Why You Should Contribute File Entries + Contributing file entries ensures that critical data files are accessible, organized, and easily retrievable. By documenting your files with key metadata, you enhance their usability in research workflows and support data sharing and collaboration. Accurate and detailed file entries also help prevent data loss, streamline future analyses, and facilitate compliance with research data management policies. -### **Who Should Be Contributing File Entries?** + +### Who Should Be Contributing File Entries? + 1. **Researchers** – Share and organize key datasets and processed results to improve reproducibility and collaboration across projects. 2. **Data Managers** – Maintain an organized structure for large-scale data repositories by documenting file attributes like formats, assays, and species. 3. **Project Leads** – Ensure data generated by your research projects is categorized and described, making it easier for teams to access and reuse. @@ -14,27 +18,31 @@ Contributing file entries ensures that critical data files are accessible, organ ## Download Template + Use the [file entry template](https://github.com/mc2-center/data-models/raw/main/templates/FileView.csv) to streamline your data entry process. The template contains pre-defined required fields. + ## Example Data Entry + The table below includes sample values to demonstrate proper attribute usage. + ### Example Data Entry (Biology-Focused) -| **Attribute** | **Example Value** | -|--------------------------------------|-------------------------------------------------------------------------------------------------------------| -| File Description | CSV file containing gene expression data for breast cancer samples | -| File Design | CSV (Comma-separated values) | -| File Url | [https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) | -| File Assay | RNA Sequencing | -| File Level | Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files) | -| File Species | Human | -| File Tumor Type | Breast Carcinoma | -| File Tissue | Breast | -| File View | List View | -| FileView_id | FileView_789012 | -| File Format | CSV | -| File Alias | Breast_Cancer_Gene_Expression.csv | +| **Attribute** | **Example Value** | +|---|---| +| File Description | CSV file containing gene expression data for breast cancer samples | +| File Design | CSV (Comma-separated values) | +| File Url | [https://www.example.com/files/breast_cancer_expression_data.csv](https://www.example.com/files/breast_cancer_expression_data.csv) | +| File Assay | RNA Sequencing | +| File Level | Level 3: Processed summary data, like gene expression counts or coverage statistics (e.g., CSV files) | +| File Species | Human | +| File Tumor Type | Breast Carcinoma | +| File Tissue | Breast | +| File View | List View | +| FileView_id | FileView_789012 | +| File Format | CSV | +| File Alias | Breast_Cancer_Gene_Expression.csv | ## Full Field Reference diff --git a/docs/model/grant.md b/docs/model/grant.md index 3296ac26..3cdd94c5 100644 --- a/docs/model/grant.md +++ b/docs/model/grant.md @@ -2,47 +2,51 @@ A **Grant** entry captures essential details about funded research projects. Gra This section outlines how to create a valid grant entry by defining key metadata, including grant type, institution, investigator, and project duration. Proper grant documentation ensures projects can be easily identified, referenced, and managed across research initiatives. -### **Why You Should Contribute Grant Entries** + +## Why You Should Contribute Grant Entries + Grant information is maintained by the MC2 Center to ensure accurate tracking of funding sources, research objectives, and project details. This helps stakeholders monitor research progress, facilitates collaboration across funded initiatives, and supports compliance with reporting and accountability requirements. At this time, grant entries are curated exclusively by MC2 Center staff and are not open for external contributions. If broader contribution access is introduced in the future, updated guidelines will be provided. -#### **Who Should Be Contributing Grant Entries?** +### Who Should Be Contributing Grant Entries? + 1. **Principal Investigators (PIs)** – Document your funded projects to highlight ongoing research, objectives, and collaborations for visibility and accountability. 2. **Research Administrators** – Maintain accurate grant records for compliance, progress monitoring, and reporting purposes. 3. **Data Managers** – Link datasets, publications, and other project outputs to their corresponding funding sources to improve data traceability. 4. **Grant Writers and Project Coordinators** – Provide detailed grant descriptions and metadata to showcase successful projects and support future funding proposals. 5. **Consortia and Collaborative Project Leads** – Share grant details to foster transparency and facilitate multi-institutional research efforts across teams and disciplines. - ## Download Template + Use the [grant entry template](https://github.com/mc2-center/data-models/raw/main/templates/GrantView.csv) to streamline your data entry process. The template contains pre-defined required fields. + ## Example Data Entry + The table below includes sample values to demonstrate proper attribute usage. It is important to note that where these examples can generally guide you on the structure of the Grant entry, these fields will generally be curated by a member of the MC2 personnel near the beginning of the grant funding period and will be made available via Synapse. -| **Attribute** | **Example Value** | -|----------------------------|-------------------------------------------------------------------------------------------------------------| -| Grant Name | Research Grant for Cancer Genomics | -| Grant Number | CA209971 | -| Grant Abstract | This grant funds research into genetic mutations contributing to aggressive cancers, focusing on tumor sequencing and gene expression analysis. | -| Grant Type | R37 | -| Grant View | Public | -| Grant Theme Name | Cancer Genomics, Precision Medicine | -| Grant Institution Name | Stanford University | -| Grant Institution Alias | Stanford | -| Grant Investigator | Dr. John Smith | -| Grant Consortium Name | HTAN | -| GrantView_id | GV12345 | -| Grant Synapse Team | Team: Project Management, Permission: Edit | -| Grant Synapse Project | Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant | -| Grant Start Date | 2022-01-01 | -| NIH RePORTER Link | [NIH Reporter Project Info](https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521) | -| Duration of Funding | 5 years | -| Embargo End Date | 2023-12-31 | - +| **Attribute** | **Example Value** | +|---|---| +| Grant Name | Research Grant for Cancer Genomics | +| Grant Number | CA209971 | +| Grant Abstract | This grant funds research into genetic mutations contributing to aggressive cancers, focusing on tumor sequencing and gene expression analysis. | +| Grant Type | R37 | +| Grant View | Public | +| Grant Theme Name | Cancer Genomics, Precision Medicine | +| Grant Institution Name | Stanford University | +| Grant Institution Alias | Stanford | +| Grant Investigator | Dr. John Smith | +| Grant Consortium Name | HTAN | +| GrantView_id | GV12345 | +| Grant Synapse Team | Team: Project Management, Permission: Edit | +| Grant Synapse Project | Synapse_ID: syn123456789, Grant_Name: NIH Brain Initiative Grant | +| Grant Start Date | 2022-01-01 | +| NIH RePORTER Link | [NIH Reporter Project Info](https://projectreporter.nih.gov/project_info_description.cfm?aid=9813521) | +| Duration of Funding | 5 years | +| Embargo End Date | 2023-12-31 | ## Full Field Reference diff --git a/docs/model/person.md b/docs/model/person.md index 24e25797..32349960 100644 --- a/docs/model/person.md +++ b/docs/model/person.md @@ -2,44 +2,52 @@ A **Person** entry provides detailed information about individuals involved in r This section outlines how to create a valid person entry, ensuring that all necessary details are captured to support identification, categorization, and data integration within MC2 Center-supported projects. -### **Why You Should Contribute Person Entries** + +## Why You Should Contribute Person Entries + Contributing person entries enhances collaboration by providing clear visibility into expertise, roles, and project involvement within research teams. It helps connect researchers and contributors across projects, facilitates networking opportunities, and allows stakeholders to easily identify key personnel for collaboration or consultation. Maintaining up-to-date profiles also supports transparency and improves recognition of contributions to research initiatives. -#### Who Should Be Contributing Person Entries? + +### Who Should Be Contributing Person Entries? + 1. Researchers and Scientists – Document your roles, publications, and collaborations to increase visibility within your field and enable others to reach out for partnerships. 2. Project Leads and Investigators – Ensure key contributors to your projects are credited and easily searchable for collaboration and reporting purposes. 3. Research Administrators – Keep records of team members, roles, and working group participation to manage projects efficiently and facilitate compliance reporting. 4. Consortium Members – Share your expertise and involvement across multiple projects or institutions to encourage cross-disciplinary collaboration and integration of research efforts. 5. Data Managers – Link researchers to datasets, tools, and resources they have contributed to ensure traceability and acknowledgment of contributions. + ## How to Contribute Person Entries + To submit a Person entry, complete the [Person Entry Submission Form](https://docs.google.com/forms/d/e/1FAIpQLScuFHETXIdfe0HPqkFQ7jx3wIIwBRqaqIXH_ZM5f2DWvNQa2g/viewform). The MC2 Center will review submissions, collect necessary consent, and curate PersonView entries accordingly. ## Example Data Entry + The table below includes sample values to demonstrate proper attribute usage. -| **Attribute** | **Example Value** | -|-----------------------------|--------------------------------------------------------------------------------------------------------| -| Name | Dr. Jane Smith | -| Alternative Names | Jane Doe, J. Smith | -| Email | janesmith@example.com | -| Url | [Professional Profile](https://www.example.com/janesmith) | -| Orcid Id | 0000-0002-1825-0097 | -| Synapse Profile Id | SP98765432 | -| Last Known Institution | Stanford University | -| Working Group Participation | Cancer Metabolism, Genomic Data Integration | -| Chair Roles | Steering Committee, Ethics Review Panel | -| Consent For Portal Display | Yes | -| Portal Display | TRUE | -| Person View | Public Profile View | -| Person Grant Number | CA202177, CA304599 | -| Person Consortium Name | HTAN, PDMC | -| Person Publications | 25700473, 31245678 | -| Person Datasets | GSE12345, DOI:10.1000/sampledataset | -| Person Tools | R Studio, Python, Jupyter Notebook | -| Person Educational Resources | Advanced Cancer Research Training, NIH Data Science Workshop | -| PersonView_id | PersonView_12345 | +| **Attribute** | **Example Value** | +|---|---| +| Name | Dr. Jane Smith | +| Alternative Names | Jane Doe, J. Smith | +| Email | janesmith@example.com | +| Url | [Professional Profile](https://www.example.com/janesmith) | +| Orcid Id | 0000-0002-1825-0097 | +| Synapse Profile Id | SP98765432 | +| Last Known Institution | Stanford University | +| Working Group Participation | Cancer Metabolism, Genomic Data Integration | +| Chair Roles | Steering Committee, Ethics Review Panel | +| Consent For Portal Display | Yes | +| Portal Display | TRUE | +| Person View | Public Profile View | +| Person Grant Number | CA202177, CA304599 | +| Person Consortium Name | HTAN, PDMC | +| Person Publications | 25700473, 31245678 | +| Person Datasets | GSE12345, DOI:10.1000/sampledataset | +| Person Tools | R Studio, Python, Jupyter Notebook | +| Person Educational Resources | Advanced Cancer Research Training, NIH Data Science Workshop | +| PersonView_id | PersonView_12345 | + ## Full Field Reference diff --git a/docs/model/publication.md b/docs/model/publication.md index a0e0f6b6..5b288a14 100644 --- a/docs/model/publication.md +++ b/docs/model/publication.md @@ -1,9 +1,13 @@ A **Publication** entry documents key information about scientific articles, research studies, and related materials. Properly recording publications ensures that data is easily traceable, searchable, and meets compliance standards. This section explains how to create a valid publication entry using required fields, templates, and example data for guidance. -### **Why You Should Contribute Publication Entries** + +## Why You Should Contribute Publication Entries + Contributing publication entries helps highlight research achievements, supports compliance with funding and reporting requirements, and ensures the discoverability of research outputs. Accurate publication records promote transparency, facilitate citation tracking, and showcase the impact of research to stakeholders. Including comprehensive details such as PubMed IDs, keywords, and grant numbers enables efficient data organization and cross-referencing within research ecosystems. -#### **Who Should Be Contributing Publication Entries?** + +### Who Should Be Contributing Publication Entries? + 1. **Researchers and Authors** – Showcase your research contributions, improve visibility, and enable easier access to your published work through linked identifiers and citations. 2. **Project Leads and Investigators** – Ensure that key publications resulting from funded research projects are documented, supporting compliance and progress reporting. 3. **Research Administrators** – Maintain an accurate record of research outputs tied to grants and projects, which aids in tracking productivity and measuring impact. @@ -12,32 +16,33 @@ Contributing publication entries helps highlight research achievements, supports ## Download Template + Download the [publication entry template](https://github.com/mc2-center/data-models/raw/main/templates/PublicationView.csv) to streamline data entry and ensure required fields are completed. -## Example Data Entry -The table below includes sample values to demonstrate proper attribute usage. -| **Attribute** | **Example Value** | -|----------------------------|---------------------------------------------------------------------------------------------------------------------| -| Publication Doi | [10.1016/j.cell.2016.02.013](https://doi.org/10.1016/j.cell.2016.02.013) | -| Publication Journal | *Nature Medicine* | -| Pubmed Id | 12345678 | -| Pubmed Url | [PubMed Link](https://www.ncbi.nlm.nih.gov/pubmed/12345678) | -| Publication Title | Role of Inflammatory Pathways in Cancer Progression | -| Publication Year | 2023 | -| Publication Keywords | Cancer Pathways, Inflammation, Tumor Microenvironment | -| Publication Authors | Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter | -| Publication Abstract | This study investigates inflammatory pathways and their impact on tumor progression and metastasis. | -| Publication Assay | RNA Sequencing, In Vivo Bioluminescence | -| Publication Tumor Type | Lung Cancer, Breast Cancer | -| Publication Tissue | Lung, Breast | -| Publication Accessibility | Open Access | -| Publication View | Online | -| Publication Grant Number | CA302123, CA301987 | -| Publication Dataset Alias | GSE45678, DOI:10.1000/exampledataset | -| PublicationView_id | PublicationView_45678 | +## Example Data Entry +The table below includes sample values to demonstrate proper attribute usage. +| **Attribute** | **Example Value** | +|---|---| +| Publication Doi | [10.1016/j.cell.2016.02.013](https://doi.org/10.1016/j.cell.2016.02.013) | +| Publication Journal | *Nature Medicine* | +| Pubmed Id | 12345678 | +| Pubmed Url | [PubMed Link](https://www.ncbi.nlm.nih.gov/pubmed/12345678) | +| Publication Title | Role of Inflammatory Pathways in Cancer Progression | +| Publication Year | 2023 | +| Publication Keywords | Cancer Pathways, Inflammation, Tumor Microenvironment | +| Publication Authors | Dr. Sarah Johnson, Dr. Michael Lee, Prof. Amanda Carter | +| Publication Abstract | This study investigates inflammatory pathways and their impact on tumor progression and metastasis. | +| Publication Assay | RNA Sequencing, In Vivo Bioluminescence | +| Publication Tumor Type | Lung Cancer, Breast Cancer | +| Publication Tissue | Lung, Breast | +| Publication Accessibility | Open Access | +| Publication View | Online | +| Publication Grant Number | CA302123, CA301987 | +| Publication Dataset Alias | GSE45678, DOI:10.1000/exampledataset | +| PublicationView_id | PublicationView_45678 | ## Full Field Reference diff --git a/docs/model/study.md b/docs/model/study.md index d165c506..f3888169 100644 --- a/docs/model/study.md +++ b/docs/model/study.md @@ -1,10 +1,13 @@ A **Study** entry documents key information about research projects, including methodologies, participants, and ethical considerations. Properly maintaining study records ensures that data is compliant with research standards, traceable, and usable across various scientific fields. This section explains how to create and maintain a valid study entry using the required fields, templates, and example data provided. -### **Why You Should Contribute Study Entries** +## Why You Should Contribute Study Entries + Contributing study entries ensures that critical research details such as methodology, investigators, and related datasets are documented and accessible. This fosters transparency, collaboration, and reproducibility in research. A well-maintained study entry also helps stakeholders understand the scope, purpose, and outcomes of research efforts, enabling better data integration and analysis across projects. -#### **Who Should Be Contributing Study Entries?** + +### Who Should Be Contributing Study Entries? + 1. **Principal Investigators (PIs)** – Provide clear documentation of your studies to enhance visibility and demonstrate research contributions for funding agencies and collaborators. 2. **Research Coordinators and Project Leads** – Ensure proper record-keeping of studies under your supervision, supporting compliance, reporting, and resource allocation. @@ -19,31 +22,38 @@ Contributing study entries ensures that critical research details such as method ## Download Template + To streamline the process, download the [study entry template](https://github.com/mc2-center/data-models/raw/main/templates/Study.csv) for standardized data entry. ## Example Data Entry + The table below includes sample values to demonstrate proper attribute usage. -| **Attribute** | **Example Value** | -|--------------------------------------|-----------------------------------------------------------------------------------------------------------------------| -| Study | Biology | -| Study Name | Effects of Diet and Exercise on Obesity | -| Study Description | Analysis of Cardiovascular Response during Exercise | -| Study Investigator | Dr. Jane Doe, PhD in Nutrition Science, University of Texas | -| Study Reuse Statement | Data from this study may be reused under conditions of proper citation and ethical approval. | -| Study_id | STUDY_2024_OBESITY_EXERCISE | -| Study Number of Participants | 5000 | -| Study De-identification Method Type | Manual | -| Study De-identification Method Description | Personal identifiers such as names and dates were removed, and randomization techniques were applied. | -| Study De-identification Method Software | Safe Harbor Privacy Software | -| Study dbGaP Accession Id | phs000424.v7.p2 | -| Study License | CC BY-NC 4.0 | -| Study Data Use Codes | IRB, PUB, HMB | +| **Attribute** | **Example Value** | +|---|---| +| Study | Biology | +| Study Name | Effects of Diet and Exercise on Obesity | +| Study Description | Analysis of Cardiovascular Response during Exercise | +| Study Investigator | Dr. Jane Doe, PhD in Nutrition Science, University of Texas | +| Study Reuse Statement | Data from this study may be reused under conditions of proper citation and ethical approval. | +| Study_id | STUDY_2024_OBESITY_EXERCISE | +| Study Number of Participants | 5000 | +| Study De-identification Method Type | Manual | +| Study De-identification Method Description | Personal identifiers such as names and dates were removed, and randomization techniques were applied. | +| Study De-identification Method Software | Safe Harbor Privacy Software | +| Study dbGaP Accession Id | phs000424.v7.p2 | +| Study License | CC BY-NC 4.0 | +| Study Data Use Codes | IRB, PUB, HMB | ## Full Field Reference Below is the full field reference table with attributes and their descriptions. -{{ read_csv('study/reference.csv') }} \ No newline at end of file +{{ read_csv('study/reference.csv') }} + + +## Test + +..include :: test.md \ No newline at end of file diff --git a/docs/model/tool.md b/docs/model/tool.md index 86bb2a71..621385cb 100644 --- a/docs/model/tool.md +++ b/docs/model/tool.md @@ -1,38 +1,46 @@ A **Tool** entry documents software applications, utilities, or platforms designed to perform specific operations in research or technical workflows. These tools can include anything from data analysis programs to machine learning frameworks and bioinformatics utilities. Accurate documentation ensures that tools are easily discoverable, traceable, and appropriately integrated into research processes. -### **Why You Should Contribute Tool Entries** + +## Why You Should Contribute Tool Entries + Contributing tool entries supports collaboration, reproducibility, and innovation by helping researchers and teams discover and use essential software for data analysis, visualization, and processing. Accurate documentation ensures tools are accessible and impactful across projects. -#### **Who Should Be Contributing Tool Entries?** + +#### Who Should Be Contributing Tool Entries? + 1. **Developers** – Share tools to boost adoption and integration. 2. **Researchers** – Document tools for replicability and collaboration. 3. **Data Scientists** – Ensure tools critical to workflows are recorded. 4. **Project Managers** – Maintain visibility of tools used across teams. 5. **IT and Support Specialists** – Provide operational details and support resources. + ## Download Template + You can download the [ToolView CSV template](https://github.com/mc2-center/data-models/raw/main/templates/ToolView.csv) to streamline data entry. ## Example Data Entry + The table below includes sample values to demonstrate proper attribute usage. -| **Attribute** | **Example Value** | -|-------------------------------|-----------------------------------------------------------------------------------------------------------------------| -| Tool Name | Adobe Photoshop | -| Tool Description | "A photo editing tool with advanced image manipulation features, supporting multiple file formats and layers." | -| Tool Release Date | January 5, 2022 | -| Tool Entity Role | Developer, Maintainer | -| Tool Entity Type | Organization | -| Tool Input Data | DNA Sequence | -| Tool Output Data | Gene ID (NCBI): NM_001282392.1 | -| Tool Grant Number | CA209975 | -| Tool Documentation Url | https://docs.example.com/tool-guide.html | -| Tool Operating System | Windows, MacOS | -| Tool Version | 3.2.1 | -| Tool View | Detail View | -| Tool Pubmed Id | 26760201 | -| Tool License | Apache-2.0 | +| **Attribute** | **Example Value** | +|---|---| +| Tool Name | Adobe Photoshop | +| Tool Description | "A photo editing tool with advanced image manipulation features, supporting multiple file formats and layers." | +| Tool Release Date | January 5, 2022 | +| Tool Entity Role | Developer, Maintainer | +| Tool Entity Type | Organization | +| Tool Input Data | DNA Sequence | +| Tool Output Data | Gene ID (NCBI): NM_001282392.1 | +| Tool Grant Number | CA209975 | +| Tool Documentation Url | https://docs.example.com/tool-guide.html | +| Tool Operating System | Windows, MacOS | +| Tool Version | 3.2.1 | +| Tool View | Detail View | +| Tool Pubmed Id | 26760201 | +| Tool License | Apache-2.0 | + ## Full Field Reference From 2027e340a1431d3f38614be506f860c9bd0cee1b Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 1 May 2025 14:52:44 -0700 Subject: [PATCH 105/106] Add CSV with attribute-to-function mappings for union_qc.py (#194) * Create qc_attribute_mapping.csv * Move qc_attribute_mapping.csv into qc_model folder --- qc_model/qc_attribute_mapping.csv | 111 ++++++++++++++++++++++++++++++ 1 file changed, 111 insertions(+) create mode 100644 qc_model/qc_attribute_mapping.csv diff --git a/qc_model/qc_attribute_mapping.csv b/qc_model/qc_attribute_mapping.csv new file mode 100644 index 00000000..5724d57b --- /dev/null +++ b/qc_model/qc_attribute_mapping.csv @@ -0,0 +1,111 @@ +component,attribute,mapping,tag,filter +PublicationView,Pubmed Id,first,aliasColumn,all +PublicationView,Component,first,componentColumn, +PublicationView,PublicationView_id,""","".join",idColumn,strict +PublicationView,GrantView Key,""","".join",grantColumn, +PublicationView,Study Key,""","".join",studyColumn, +PublicationView,Publication Doi,first,, +PublicationView,Publication Journal,first,, +PublicationView,Pubmed Url,first,,strict +PublicationView,Publication Title,first,, +PublicationView,Publication Year,first,, +PublicationView,Publication Keywords,first,, +PublicationView,Publication Authors,first,, +PublicationView,Publication Abstract,first,, +PublicationView,Publication Assay,first,,strict +PublicationView,Publication Tumor Type,first,,strict +PublicationView,Publication Tissue,first,,strict +PublicationView,Publication Accessibility,first,,all +PublicationView,Publication Dataset Alias,first,, +DatasetView,Dataset Alias,first,aliasColumn,all +DatasetView,Component,first,componentColumn, +DatasetView,DatasetView_id,""","".join",idColumn,all +DatasetView,GrantView Key,""","".join",grantColumn, +DatasetView,Study Key,""","".join",studyColumn, +DatasetView,PublicationView Key,""","".join",pubsColumn, +DatasetView,Dataset Name,first,, +DatasetView,Dataset Description,first,, +DatasetView,Dataset Design,first,, +DatasetView,Dataset Assay,first,,strict +DatasetView,Dataset Species,first,,strict +DatasetView,Dataset Tumor Type,first,,strict +DatasetView,Dataset Tissue,first,,strict +DatasetView,Dataset Url,first,,all +DatasetView,Dataset Doi,first,, +DatasetView,Dataset File Formats,first,,strict +DatasetView,Data Use Codes,""","".join",, +DatasetView,entityId,""","".join",, +ToolView,Tool Name,first,aliasColumn,all +ToolView,Component,first,componentColumn, +ToolView,ToolView_id,""","".join",idColumn,strict +ToolView,PublicationView Key,""","".join",pubsColumn, +ToolView,GrantView Key,""","".join",grantColumn, +ToolView,Study Key,""","".join",studyColumn, +ToolView,DatasetView Key,""","".join",datasetsColumn, +ToolView,Tool Description,first,, +ToolView,Tool Homepage,first,,strict +ToolView,Tool Version,first,, +ToolView,Tool Operation,first,, +ToolView,Tool Input Data,first,, +ToolView,Tool Output Data,first,, +ToolView,Tool Input Format,first,, +ToolView,Tool Output Format,first,, +ToolView,Tool Function Note,first,, +ToolView,Tool Cmd,first,, +ToolView,Tool Type,first,,strict +ToolView,Tool Topic,first,,strict +ToolView,Tool Operating System,first,, +ToolView,Tool Language,first,,strict +ToolView,Tool License,first,, +ToolView,Tool Cost,first,, +ToolView,Tool Accessibility,first,, +ToolView,Tool Download Url,first,, +ToolView,Tool Download Type,first,, +ToolView,Tool Download Note,first,, +ToolView,Tool Download Version,first,, +ToolView,Tool Documentation Url,first,,strict +ToolView,Tool Documentation Type,first,,strict +ToolView,Tool Documentation Note,first,, +ToolView,Tool Link Url,first,, +ToolView,Tool Link Type,first,, +ToolView,Tool Link Note,first,, +ToolView,Tool Doi,first,, +ToolView,Tool Date Last Modified,first,, +ToolView,Tool Release Date,first,, +ToolView,Tool Package Dependencies,first,, +ToolView,Tool Package Dependencies Present,first,, +ToolView,Tool Compute Requirements,first,, +ToolView,Tool Entity Name,first,, +ToolView,Tool Entity Type,first,, +ToolView,Tool Entity Role,first,, +ToolView,entityId,""","".join",, +EducationalResource,Resource Alias,first,aliasColumn,all +EducationalResource,Component,first,componentColumn, +EducationalResource,EducationalResource_id,""","".join",idColumn,all +EducationalResource,PublicationView Key,""","".join",pubsColumn, +EducationalResource,GrantView Key,""","".join",grantColumn, +EducationalResource,Study Key,""","".join",studyColumn, +EducationalResource,DatasetView Key,""","".join",datasetsColumn, +EducationalResource,ToolView Key,""","".join",toolsColumn, +EducationalResource,Resource Title,first,, +EducationalResource,Resource Link,first,, +EducationalResource,Resource Doi,first,, +EducationalResource,Resource Topic,first,, +EducationalResource,Resource Activity Type,first,, +EducationalResource,Resource Primary Format,first,, +EducationalResource,Resource Intended Use,first,, +EducationalResource,Resource Primary Audience,first,, +EducationalResource,Resource Educational Level,first,, +EducationalResource,Resource Description,first,, +EducationalResource,Resource Origin Institution,first,, +EducationalResource,Resource Language,first,, +EducationalResource,Resource Contributors,first,, +EducationalResource,Resource Secondary Topic,first,, +EducationalResource,Resource License,first,, +EducationalResource,Resource Use Requirements,first,, +EducationalResource,Resource Internal Identifier,first,, +EducationalResource,Resource Media Accessibility,first,, +EducationalResource,Resource Access Hazard,first,, +EducationalResource,Resource Dataset Alias,first,, +EducationalResource,Resource Tool Link,first,, +EducationalResource,entityId,""","".join",, From 8b68c42f1bb6e30825130840c0cc4a741bf71461 Mon Sep 17 00:00:00 2001 From: Orion Banks <49208907+Bankso@users.noreply.github.com> Date: Thu, 10 Jul 2025 17:45:09 -0700 Subject: [PATCH 106/106] Add missing info (#203) * Fix column names and add definitions NGS reads-type columns were missing descriptions because Reads wasn't capitalized Added attribute definitions for GeoMx Tags and GeoMx Tissue Stain (columns already in template) * Create GC_v6.0.4_MC2_10.0.0_map_5-9-25.csv From updated mappings (will be continuously updated): https://docs.google.com/spreadsheets/d/1LLpSIFAh12YdKnGfzXMxGpoKCaEH90nDx-QvncaIJlk/edit?usp=sharing * Added CODEX to assay values * Move AR-related content to Governance AR-related content has been moved to governanceDUO repo and will no longer be maintained here * Update sequencingLevel1 attributes Add NGS Library Source Material and NGS Library Source Molecule attributes * Delete librarySource.csv * Create librarySourceMaterial.csv * Create librarySourceMolecule.csv * Add new valid value mappings Add valid values mappings for NGS Library Source Material and NGS Library Source Molecule attributes, from sequencingLevel1/librarySourceMolecule.csv and sequencingLevel1/librarySelection.csv, respectively * Add attributes to sequencingLevel1 NGS Library Source Molecule and NGS Library Source Material * Add attributes to sequencingLevel2 NGS Library Source Molecule and NGS Library Source Material * Add attributes to geomcLevel1 NGS Library Source Material, NGS Library Source Molecule * Add attributes to geomxLevel2 NGS Library Source Material, NGS Library Source Molecule * Add DCC as a file format * Delete mc2.DatasetView_TEMPLATE.schema.json Template is superseded by v10.0.0 JSON; v10.0.0 is valid Synapse JSON. JSON schema is not currently used in our curation workflow - v10.0.0 schema is being maintained as an example of valid JSON schema, since there were some changes that needed to be made previously to create useable JSON schemas from schematic auto-generated outputs * Update qc_attribute_mapping.csv * Add additional source attributes to GC mapping * Add Study Number of Samples * Update GC_v6.0.4_MC2_11.0.0_map_6-24-25.csv * Make model CSV * Convert CSV to JSON-LD schematic 25.4.1 * Update mc2_qc.model.csv * Build qc JSON-LD schematic 25.4.1 --------- Co-authored-by: aditya-nath-sage --- all_valid_values.csv | 25 +- .../mc2.CA261841duoCodeAR.schema.json | 34 - ...on => mc2.DatasetView-v10.0.0-schema.json} | 109 +- .../mc2.duoCodeAR_TEMPLATE.schema.json | 60 - mc2.model.csv | 36 +- mc2.model.jsonld | 538 +- modules/dataCatalog/annotationProperty.csv | 2 +- modules/dataset/annotationProperty.csv | 4 +- modules/file/annotationProperty.csv | 4 +- modules/geomxLevel1/annotationProperty.csv | 2 +- modules/geomxLevel2/annotationProperty.csv | 2 +- modules/geomxRoi/annotationProperty.csv | 4 +- modules/mapping.yaml | 6 +- modules/publication/annotationProperty.csv | 2 +- .../sequencingLevel1/annotationProperty.csv | 7 +- modules/sequencingLevel1/librarySource.csv | 12 - .../librarySourceMaterial.csv | 7 + .../librarySourceMolecule.csv | 7 + .../sequencingLevel2/annotationProperty.csv | 2 +- .../GC_v6.0.4_MC2_11.0.0_map_6-24-25.csv | 276 + modules/shared/assay.csv | 3 +- modules/shared/dataset_file_format.csv | 1 + modules/sharingPlans/annotationProperty.csv | 2 +- modules/study/annotationProperty.csv | 5 +- qc_model/mc2_qc.model.csv | 133 +- qc_model/mc2_qc.model.jsonld | 29617 +++++++++++----- qc_model/qc_attribute_mapping.csv | 1 + 27 files changed, 20876 insertions(+), 10025 deletions(-) delete mode 100644 json_schemas/mc2.CA261841duoCodeAR.schema.json rename json_schemas/{mc2.DatasetView_TEMPLATE.schema.json => mc2.DatasetView-v10.0.0-schema.json} (94%) delete mode 100644 json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json delete mode 100644 modules/sequencingLevel1/librarySource.csv create mode 100644 modules/sequencingLevel1/librarySourceMaterial.csv create mode 100644 modules/sequencingLevel1/librarySourceMolecule.csv create mode 100644 modules/shared/GC_v6.0.4_MC2_11.0.0_map_6-24-25.csv diff --git a/all_valid_values.csv b/all_valid_values.csv index cf726822..e1284f5f 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -7973,6 +7973,7 @@ dataset_file_format,COOL, dataset_file_format,CSV, dataset_file_format,DAE, dataset_file_format,DB, +dataset_file_format,DCC, dataset_file_format,DS_Store, dataset_file_format,FASTA, dataset_file_format,FASTQ, @@ -8579,6 +8580,7 @@ assay,SDS-PAGE, assay,Cell Fractionation, assay,Multiscale Light Sheet Microscopy, assay,Light Sheet Microscopy, +assay,CODEX, tissue,Gonad,"Gonadal, Gonads" tissue,Abdominal Esophagus,"ESOPHAGUS, ABDOMINAL" tissue,Adipose Tissue,"Adipose, Body Fat, Fat Tissue, Human Adipose Tissue" @@ -10787,17 +10789,18 @@ libraryStrategy,WCS, libraryStrategy,WGA, libraryStrategy,WGS, libraryStrategy,WXS, -librarySource,Genomic, -librarySource,Genomic Single Cell, -librarySource,Metagenomic, -librarySource,Single Nucleus, -librarySource,Single Cell, -librarySource,Metatranscriptomic, -librarySource,Other, -librarySource,Synthetic, -librarySource,Transcriptomic, -librarySource,Transcriptomic Single Cell, -librarySource,Viral RNA, +librarySourceMaterial,Bulk Cells, +librarySourceMaterial,Bulk Tissue, +librarySourceMaterial,Bulk Nuclei, +librarySourceMaterial,Single-nuclei, +librarySourceMaterial,Single-cells, +librarySourceMaterial,Not Reported, +librarySourceMolecule,Genomic DNA, +librarySourceMolecule,Metagenomic, +librarySourceMolecule,Metatranscriptomic, +librarySourceMolecule,Not Reported, +librarySourceMolecule,Transcriptome, +librarySourceMolecule,Viral RNA, librarySelection,5-methylcytidine antibody, librarySelection,CAGE, librarySelection,rRNA Depletion, diff --git a/json_schemas/mc2.CA261841duoCodeAR.schema.json b/json_schemas/mc2.CA261841duoCodeAR.schema.json deleted file mode 100644 index e8ca4981..00000000 --- a/json_schemas/mc2.CA261841duoCodeAR.schema.json +++ /dev/null @@ -1,34 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema", - "title": "MC2 CA261841 AR-DUO schema", - "$id": "Multi Consortia Coordinating Center-CA261841-duoCodeAR-10.0.0", - "description": "This schema defines how data may be accessed for study CA261841-CR_2024", - "allOf": [ - { - "if": { - "properties": { - "duoCodes": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": "RTN, NPUNCU" - } - } - }, - "required": ["duoCodes"] - }, - "then": { - "properties": { - "_accessRequirementIds": { - "type": "array", - "contains": { - "const": 9606628 - } - } - } - } - } - ] -} \ No newline at end of file diff --git a/json_schemas/mc2.DatasetView_TEMPLATE.schema.json b/json_schemas/mc2.DatasetView-v10.0.0-schema.json similarity index 94% rename from json_schemas/mc2.DatasetView_TEMPLATE.schema.json rename to json_schemas/mc2.DatasetView-v10.0.0-schema.json index 7088d3b2..e229fb33 100644 --- a/json_schemas/mc2.DatasetView_TEMPLATE.schema.json +++ b/json_schemas/mc2.DatasetView-v10.0.0-schema.json @@ -4,22 +4,22 @@ "title": "DatasetView_validation", "type": "object", "properties": { - "Study Key": { + "StudyKey": { "type": "string", "title": "StudyKey", "description": "The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components." }, - "PublicationView Key": { + "PublicationViewKey": { "type": "string", "title": "PublicationViewKey", "description": "Unique PublicationView_id foreign key(s) that link metadata entries as part of the same collection." }, - "GrantView Key": { + "GrantViewKey": { "type": "string", "title": "GrantViewKey", "description": "Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection." }, - "Dataset File Formats": { + "DatasetFileFormats": { "type": "array", "items": { "enum": [ @@ -107,74 +107,37 @@ ] } }, - "Dataset Design": { + "DatasetDesign": { "type": "string", "title": "DatasetDesign", "description": "The overall design of the dataset.", "maxLength": 500 }, - "Dataset Name": { - "not": { - "type": "null" - }, + "DatasetName": { "type": "string", "title": "DatasetName", "description": "Name of the dataset.", "maxLength": 250 }, - "Data Use Codes": { + "duoCodes": { "type": "array", - "title": "DataUseCodes", - "description": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes", "items": { - "enum": [ - "US", - "NPU", - "PS", - "RS", - "CC", - "POA", - "PUB", - "TS", - "NPUNCU", - "DUM", - "NMDS", - "DS", - "GSO", - "IRB", - "IS", - "RTN", - "NPOA", - "HMB", - "COL", - "NCU", - "GS", - "MOR", - "NRES", - "GRU", - "" - ] - } + "type": "string" + }, + "title": "duoCodes", + "description": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/file/#attribute-data-use-codes" }, - "Dataset Alias": { + "DatasetAlias": { "type": "string", "title": "DatasetAlias", - "description": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345 or the dataset Synapse Id", - "not": { - "type": "null" - }, - "minLength": 1 + "description": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345 or the dataset Synapse Id" }, - "Dataset Url": { + "DatasetUrl": { "type": "string", "title": "DatasetUrl", - "description": "The url of where the dataset is stored.", - "not": { - "type": "null" - }, - "minLength": 1 + "description": "The url of where the dataset is stored." }, - "Dataset Assay": { + "DatasetAssay": { "type": "array", "title": "DatasetAssay", "description": "The assay(s) the dataset is representative of.", @@ -562,7 +525,7 @@ ] } }, - "Dataset Description": { + "DatasetDescription": { "type": "string", "title": "DatasetDescription", "description": "Text description of the dataset.", @@ -571,13 +534,9 @@ "DatasetView_id": { "type": "string", "title": "DatasetViewid", - "description": "A unique primary key that enables record updates using schematic", - "not": { - "type": "null" - }, - "minLength": 1 + "description": "A unique primary key that enables record updates using schematic" }, - "Dataset Species": { + "DatasetSpecies": { "type": "array", "title": "DatasetSpecies", "description": "The species the data was collected on.", @@ -614,7 +573,7 @@ ] } }, - "Dataset Tumor Type": { + "DatasetTumorType": { "type": "array", "title": "DatasetTumorType", "description": "The tumor type(s), if applicable, of the data collected on", @@ -810,7 +769,7 @@ ] } }, - "Dataset Tissue": { + "DatasetTissue": { "type": "array", "title": "DatasetTissue", "description": "Tissue type(s) associated with the dataset", @@ -937,30 +896,12 @@ "Component": { "type": "string", "title": "Component", - "description": "Type of metadata associated with this entity.", - "not": { - "type": "null" - }, - "minLength": 1 + "description": "Type of metadata associated with this entity." }, - "Dataset Doi":{ + "DatasetDoi":{ "type": "string", "title": "DatasetDoi", - "description": "The Digital Object Identifier (DOI) associated with the dataset.", - "not": { - "type": "null" - }, - "minLength": 1 + "description": "The Digital Object Identifier (DOI) associated with the dataset." } - }, - "required": [ - "Dataset Name", - "Dataset Alias", - "Dataset Url", - "Dataset Assay", - "DatasetView_id", - "Dataset Species", - "Component", - "Dataset Doi" - ] + } } \ No newline at end of file diff --git a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json b/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json deleted file mode 100644 index c5904d54..00000000 --- a/json_schemas/mc2.duoCodeAR_TEMPLATE.schema.json +++ /dev/null @@ -1,60 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-07/schema", - "title": "MC2 Example AR-DUO schema", - "$id": "Multi Consortia Coordinating Center-CA987654-duoCodeAR-10.0.0", - "description": "This example schema defines how DUO should be used for MC2 Center Synapse projects.", - "allOf": [ - { - "if": { - "properties": { - "duoCodes": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": "IRB" - } - } - }, - "required": ["duoCodes"] - }, - "then": { - "properties": { - "_accessRequirementIds": { - "type": "array", - "contains": { - "const": 0 - } - } - } - } - }, - { - "if": { - "properties": { - "duoCodes": { - "type": "array", - "items": { - "type": "string" - }, - "contains": { - "const": "HMB" - } - } - }, - "required": ["duoCodes"] - }, - "then": { - "properties": { - "_accessRequirementIds": { - "type": "array", - "contains": { - "const": 0 - } - } - } - } - } - ] -} \ No newline at end of file diff --git a/mc2.model.csv b/mc2.model.csv index ecf8ee4c..4f39e414 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -70,7 +70,7 @@ datePublished,Date data were published/available on Synapse.,,,FALSE,,,,schema.o funder,The entity(ies) responsible for funding the data contributors.,NIH,,FALSE,,,,schema.org/dataset,list like includedInDataCatalog,Link(s) to known data catalog(s) the dataset is included in.,,,FALSE,,,,schema.org/dataset,str license,"The terms and conditions underwhich the data are allowed to be accessed and used. Unless information for license is clear, this should default to UNKNOWN.","CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,schema.org/dataset,str -measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,FALSE,,,,schema.org/dataset,list like +measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,FALSE,,,,schema.org/dataset,list like species,"Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,schema.org/dataset,list like subject,Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme.,,,FALSE,,,,schema.org/dataset,list like title,The name of the dataset.,,,TRUE,,,,schema.org/dataset,str @@ -80,11 +80,11 @@ Dataset Description,Description of the dataset.,,,FALSE,,,,, Dataset Design,The overall design of the dataset.,,,FALSE,,,,, Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DCC, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like @@ -117,7 +117,7 @@ EducationalResource_id,A unique primary key that enables record updates using sc File Description,Description of the file.,,,FALSE,,,,,str File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,"The assay(s) the file is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +File Assay,"The assay(s) the file is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like @@ -130,7 +130,7 @@ File Longitudinal Sequence Identifier,"The order in which this file was collecte File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num -File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, +File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DCC, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like NanoString GeoMx Auxiliary Files,Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.,,"Component, NanoStringGeoMxAuxiliaryFiles_id, Synapse ID of GeoMx DSP ROI Segment Annotation File, Synapse ID of GeoMx DSP PKC File, Synapse ID of GeoMx Lab Worksheet File, Synapse ID of GeoMx DSP Config File",FALSE,,,,MC2/STE, @@ -143,14 +143,14 @@ NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component NanoStringGeoMxDSPImaging_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx Imaging Channel Names,Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,HTAN,list like GeoMx Imaging AOI Coordinates,Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,MC2/STE,list like -NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, +NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, NanoStringGeoMxDSPLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx DSP Assay Type,The assay type which was used for the GeoMx DSP pipeline.,"RNA nCounter, Protein nCounter, Protein NGS, RNA NGS",,FALSE,,,,HTAN, -NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NGS Unique Probe Count, NGS Unique Target Count, NGS Matrix Type, Software and Version, Workflow Type, Workflow Parameter Description, Workflow Link",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw reads, NGS Stitched reads, NGS Aligned reads, NGS Deduplicated reads, NGS Trimmed reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", +NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", NanoStringGeoMXROISegmentAnnotation_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx Scan name,GeoMx Scan name (as appears in Segment Summary),,,TRUE,,,,HTAN,str GeoMx ROI Name,Name of Region of Interest corresponding to file. Multiple names should be comma-separated,,,TRUE,,,,HTAN,list like @@ -176,6 +176,8 @@ GeoMx No Template Control count,The number of reads detected by the GeoMx probe GeoMx Excluded Outlier Probes,The list of probes excluded from analysis.,,,FALSE,,,,STE,num GeoMx Limit of Quantification,The calculated limit of quantification associated with the segment.,,,FALSE,,,,STE,num GeoMx Sequencing Saturation,"The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. More specifically, this is the fraction of confidently mapped, valid spot-barcode, valid UMI reads that had a non-unique (spot-barcode, UMI, gene).",,,FALSE,,,,HTAN,num +GeoMx Tags,"The basename(s) or unique identifier(s) for FASTQ, RCC, or DCC file(s) associated with this ROI.",,,FALSE,,,,MC2/STE,str +GeoMx Tissue Stain,"Text description of the stain, fluorescent reporter, or channel used to select the boundaries of the ROI.",,,FALSE,,,,MC2/STE,str Grant Name,Name of the grant,,,TRUE,,,,, Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ Grant Abstract,Abstract for the grant,,,TRUE,,,,, @@ -367,7 +369,7 @@ Publication Year,Year of the publication,,,TRUE,,,,, Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like Publication Abstract,The abstract of the publication.,,,TRUE,,,,, -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, @@ -375,14 +377,14 @@ Publication View,The denormalized manifest for publication submission.,,"Compone Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, +Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, SequencingLevel1_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique NGS Sequencing Coverage,Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length),,,FALSE,,,,CDS/Genomic info,num NGS Read Length,"The average length of the sequencing reads. Can be integer, null",,,TRUE,,,,HTAN,num NGS Library Selection Method,How nucleic acid molecules are isolated.,"5-methylcytidine antibody, CAGE, rRNA Depletion, cDNA, cDNA oligo_dT, cDNA random priming, CF-H, CF-M, CF-S, CF-T, Poly-T Enrichment, ChIP, DNAse, HMPR, Hybrid Selection, Not applicable, Inverse rRNA, MBD2 protein methyl-CpG binding domain, miRNA Size Fractionation, MDA, MF, MNase, MSLL, Oligo-dT, Other, Padlock probes capture method, PCR, PolyA, RACE, Random, Random PCR, Reduced Representation, Repeat fractionation, Restriction Digest, RT-PCR, Size fractionation, Affinity Enrichment, Unspecified",,FALSE,,,,HTAN,str NGS Library Strategy,"The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)","AMPLICON, ATAC-seq, Bisulfite-Seq, ChIA-PET, ChIP-Seq, CLONE, CLONEEND, CTS, Spatial-tx, snATAC-Seq, DNase-Hypersensitivity, scMultiome, EST, FAIRE-seq, FINISHING, FL-cDNA, Hi-C, MBD-Seq, MeDIP-Seq, miRNA-Seq, MNase-Seq, MRE-Seq, ncRNA-Seq, Other, POOLCLONE, RAD-Seq, RIP-Seq, RNA-Seq, SELEX, DNA-Seq, ssRNA-seq, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, Tn-Seq, WCS, WGA, WGS, WXS",,TRUE,,,,CDS/sequencing,str -NGS Library Source,The type of source material being sequenced.,"Genomic, Genomic Single Cell, Metagenomic, Single Nucleus, Single Cell, Metatranscriptomic, Other, Synthetic, Transcriptomic, Transcriptomic Single Cell, Viral RNA",,TRUE,,,,CDS/sequencing,str -NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,CDS/sequencing,str +NGS Library Source Material,The type of source material being sequenced.,"Bulk Cells, Bulk Tissue, Bulk Nuclei, Single-nuclei, Single-cells, Not Reported",,TRUE,,,,GC Data Model v6.0.2/genomic info/library_source_material,str +NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,GC Data Model v6.0.2/genomic info/library_layout,str NGS Library Preparation Kit Name,Name of Library Preparation Kit. String,,,FALSE,,,,HTAN,str NGS Library Preparation Kit Vendor,Vendor of Library Preparation Kit. String,,,FALSE,,,,HTAN,str NGS Library Preparation Kit Version,Version of Library Preparation Kit. String,,,FALSE,,,,HTAN,str @@ -393,7 +395,8 @@ NGS Library Preparation Days from Index,Number of days between sample for assay NGS Sequencing Library Construction Days from Index,Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable',,,TRUE,,,,HTAN,regex match \d+$|Not\sApplicable$|unknown$ NGS Unique Bases,Count of unique basecalls present in the data.,,,FALSE,,,,CDS/Sequencing,num NGS Raw Reads,Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file. ,,,FALSE,,,,CDS/Sequencing,num -Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, +NGS Library Source Molecule,The source of nucleic acids represented in the sequencing library. ,"Genomic DNA, Metagenomic, Metatranscriptomic, Not Reported, Transcriptome, Viral RNA",,,,,,GC Data Model v6.0.2/genomic info/library_source_molecule,str +Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, SequencingLevel2_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique NGS Stitched Reads,"Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads",,,FALSE,,,,HTAN,num NGS Aligned Reads,Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.,,,FALSE,,,,HTAN,num @@ -461,7 +464,7 @@ Genome Annotation URL,Link to the human genome annotation (GTF) file; ftp or ref DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like @@ -481,13 +484,13 @@ DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License, Study Source Geography, Study Data Permission, Study Data Tier",FALSE,,,Grant View,, +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study Number of Samples, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License, Study Source Geography, Study Data Permission, Study Data Tier",FALSE,,,Grant View,, Study Name,Name of the study,,,TRUE,,,,,str Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.",,,TRUE,,,,,str Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.",,,FALSE,,,,,str Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.,,,TRUE,,,,CDS/collection,int +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject.,,,TRUE,,,,CDS/collection,int Study De-identification Method Type,General description of the de-identification method. Maps to DUOplus3.,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str @@ -498,6 +501,7 @@ Study Index Date,"The reference event associated with timepoints in this study. Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,DUOplus,list like Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,"Agreement, Attestation, Award, Other",,FALSE,,,,DUOplus,list like Study Data Tier,The access tier(s) associated with the data in this study. Maps to DUOplus5.,"Anonymous, Open, Controlled, Private",,FALSE,,,,DUOplus,list like +Study Number of Samples,The number of specimens associated with systematic investigation into a subject.,,,TRUE,,,,GC v6.0.2/study.number_of_samples,int Theme,Themes associated with resources derived from consortia activities,,"Component, Theme Name, Theme Display Name, Theme Description",FALSE,,,,, Theme Name,"Machine readable name of the research theme. (e.g. compuational_resource, drug_resistance_sensitivity).",,,TRUE,,,,, Theme Display Name,"Human readable display name of the research theme. (e.g. Computational Resource, Drug Resistance/Sensitivity)",,,TRUE,,,,, diff --git a/mc2.model.jsonld b/mc2.model.jsonld index 15bbdc63..06ee5bd6 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -29286,6 +29286,9 @@ { "@id": "bts:BiospecimenPathology" }, + { + "@id": "bts:NGSLibrarySourceMolecule" + }, { "@id": "bts:BiospecimenLastKnownDiseaseStatus" }, @@ -29304,6 +29307,9 @@ { "@id": "bts:ModelTreatmentResponse" }, + { + "@id": "bts:NGSLibrarySourceMaterial" + }, { "@id": "bts:IndividualMetastasisStage" }, @@ -39606,9 +39612,6 @@ { "@id": "bts:ResourcePrimaryAudience" }, - { - "@id": "bts:NGSLibrarySource" - }, { "@id": "bts:ToolLinkType" }, @@ -202396,6 +202399,9 @@ { "@id": "bts:StudyNumberofParticipants" }, + { + "@id": "bts:StudyNumberofSamples" + }, { "@id": "bts:StudyDe-identificationMethodType" }, @@ -210355,6 +210361,9 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "measurementTechnique", @@ -221333,6 +221342,38 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:CODEX", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CODEX", + "rdfs:subClassOf": [ + { + "@id": "bts:ImageAssayType" + }, + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CODEX", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Species", "@type": "rdfs:Class", @@ -222740,6 +222781,9 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "Dataset Assay", @@ -228808,6 +228852,9 @@ { "@id": "bts:DB" }, + { + "@id": "bts:DCC" + }, { "@id": "bts:DSStore" }, @@ -229243,6 +229290,32 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:DCC", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "DCC", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetFileFormats" + }, + { + "@id": "bts:FileFormat" + }, + { + "@id": "bts:ToolInputFormat" + }, + { + "@id": "bts:ToolOutputFormat" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DCC", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:DSStore", "@type": "rdfs:Class", @@ -252718,6 +252791,9 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "File Assay", @@ -255172,6 +255248,9 @@ { "@id": "bts:DB" }, + { + "@id": "bts:DCC" + }, { "@id": "bts:DSStore" }, @@ -261698,7 +261777,10 @@ "@id": "bts:NGSLibraryStrategy" }, { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" }, { "@id": "bts:NGSLibrarySelectionMethod" @@ -261934,10 +262016,10 @@ ] }, { - "@id": "bts:NGSLibrarySource", + "@id": "bts:NGSLibrarySourceMaterial", "@type": "rdfs:Class", "rdfs:comment": "The type of source material being sequenced.", - "rdfs:label": "NGSLibrarySource", + "rdfs:label": "NGSLibrarySourceMaterial", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -261948,41 +262030,65 @@ }, "schema:rangeIncludes": [ { - "@id": "bts:Genomic" + "@id": "bts:BulkCells" }, { - "@id": "bts:GenomicSingleCell" + "@id": "bts:BulkTissue" }, { - "@id": "bts:Metagenomic" + "@id": "bts:BulkNuclei" }, { - "@id": "bts:SingleNucleus" + "@id": "bts:Single-nuclei" }, { - "@id": "bts:SingleCell" + "@id": "bts:Single-cells" }, { - "@id": "bts:Metatranscriptomic" + "@id": "bts:NotReported" + } + ], + "sms:displayName": "NGS Library Source Material", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:NGSLibrarySourceMolecule", + "@type": "rdfs:Class", + "rdfs:comment": "The source of nucleic acids represented in the sequencing library.", + "rdfs:label": "NGSLibrarySourceMolecule", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:GenomicDNA" }, { - "@id": "bts:Other" + "@id": "bts:Metagenomic" }, { - "@id": "bts:Synthetic" + "@id": "bts:Metatranscriptomic" }, { - "@id": "bts:Transcriptomic" + "@id": "bts:NotReported" }, { - "@id": "bts:TranscriptomicSingleCell" + "@id": "bts:Transcriptome" }, { "@id": "bts:ViralRNA" } ], - "sms:displayName": "NGS Library Source", - "sms:required": "sms:true", + "sms:displayName": "NGS Library Source Molecule", + "sms:required": "sms:false", "sms:validationRules": [ "str" ] @@ -262685,19 +262791,19 @@ "@id": "bts:GeoMxSlidename" }, { - "@id": "bts:NGSRawreads" + "@id": "bts:NGSRawReads" }, { - "@id": "bts:NGSStitchedreads" + "@id": "bts:NGSStitchedReads" }, { - "@id": "bts:NGSAlignedreads" + "@id": "bts:NGSAlignedReads" }, { - "@id": "bts:NGSDeduplicatedreads" + "@id": "bts:NGSDeduplicatedReads" }, { - "@id": "bts:NGSTrimmedreads" + "@id": "bts:NGSTrimmedReads" }, { "@id": "bts:NGSSequencingCoverage" @@ -262837,7 +262943,10 @@ "@id": "bts:NGSLibraryStrategy" }, { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" }, { "@id": "bts:NGSLibrarySelectionMethod" @@ -263329,7 +263438,7 @@ { "@id": "bts:GeoMxTags", "@type": "rdfs:Class", - "rdfs:comment": "TBD", + "rdfs:comment": "The basename(s) or unique identifier(s) for FASTQ, RCC, or DCC file(s) associated with this ROI.", "rdfs:label": "GeoMxTags", "rdfs:subClassOf": [ { @@ -263341,7 +263450,9 @@ }, "sms:displayName": "GeoMx Tags", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { "@id": "bts:GeoMxROIXCoordinate", @@ -263593,7 +263704,7 @@ { "@id": "bts:GeoMxTissueStain", "@type": "rdfs:Class", - "rdfs:comment": "TBD", + "rdfs:comment": "Text description of the stain, fluorescent reporter, or channel used to select the boundaries of the ROI.", "rdfs:label": "GeoMxTissueStain", "rdfs:subClassOf": [ { @@ -263605,7 +263716,9 @@ }, "sms:displayName": "GeoMx Tissue Stain", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { "@id": "bts:GeoMxSlidename", @@ -263626,91 +263739,6 @@ "str" ] }, - { - "@id": "bts:NGSRawreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSRawreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Raw reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSStitchedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSStitchedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Stitched reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSAlignedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSAlignedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Aligned reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSDeduplicatedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSDeduplicatedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Deduplicated reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSTrimmedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSTrimmedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Trimmed reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:GeoMxNegativecountmean", "@type": "rdfs:Class", @@ -270128,23 +270156,6 @@ "sms:required": "sms:true", "sms:validationRules": [] }, - { - "@id": "bts:CODEX", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CODEX", - "rdfs:subClassOf": [ - { - "@id": "bts:ImageAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "CODEX", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:CyCIF", "@type": "rdfs:Class", @@ -316846,6 +316857,9 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "Publication Assay", @@ -318492,7 +318506,10 @@ "@id": "bts:NGSLibraryStrategy" }, { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" }, { "@id": "bts:NGSLibrarySelectionMethod" @@ -319679,172 +319696,87 @@ "sms:validationRules": [] }, { - "@id": "bts:Genomic", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Genomic", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GenomicSingleCell", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GenomicSingleCell", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic Single Cell", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Metagenomic", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Metagenomic", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Metagenomic", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SingleNucleus", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SingleNucleus", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Single Nucleus", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SingleCell", + "@id": "bts:BulkCells", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SingleCell", + "rdfs:label": "BulkCells", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Single Cell", + "sms:displayName": "Bulk Cells", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Metatranscriptomic", + "@id": "bts:BulkTissue", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Metatranscriptomic", + "rdfs:label": "BulkTissue", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Metatranscriptomic", + "sms:displayName": "Bulk Tissue", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Synthetic", + "@id": "bts:BulkNuclei", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Synthetic", + "rdfs:label": "BulkNuclei", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synthetic", + "sms:displayName": "Bulk Nuclei", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Transcriptomic", + "@id": "bts:Single-nuclei", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Transcriptomic", + "rdfs:label": "Single-nuclei", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transcriptomic", + "sms:displayName": "Single-nuclei", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TranscriptomicSingleCell", + "@id": "bts:Single-cells", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TranscriptomicSingleCell", + "rdfs:label": "Single-cells", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transcriptomic Single Cell", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ViralRNA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ViralRNA", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Viral RNA", + "sms:displayName": "Single-cells", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -321038,6 +320970,91 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:GenomicDNA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GenomicDNA", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genomic DNA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Metagenomic", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Metagenomic", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Metagenomic", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Metatranscriptomic", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Metatranscriptomic", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Metatranscriptomic", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Transcriptome", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Transcriptome", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Transcriptome", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ViralRNA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ViralRNA", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Viral RNA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:SequencingLevel2", "@type": "rdfs:Class", @@ -321070,7 +321087,10 @@ "@id": "bts:NGSLibraryStrategy" }, { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" }, { "@id": "bts:NGSLibrarySelectionMethod" @@ -323476,6 +323496,9 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "DSP Dataset Assay", @@ -325462,7 +325485,7 @@ { "@id": "bts:StudyNumberofParticipants", "@type": "rdfs:Class", - "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.", + "rdfs:comment": "The number of participant instances associated with systematic investigation into a subject.", "rdfs:label": "StudyNumberofParticipants", "rdfs:subClassOf": [ { @@ -325478,6 +325501,25 @@ "int" ] }, + { + "@id": "bts:StudyNumberofSamples", + "@type": "rdfs:Class", + "rdfs:comment": "The number of specimens associated with systematic investigation into a subject.", + "rdfs:label": "StudyNumberofSamples", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Study Number of Samples", + "sms:required": "sms:true", + "sms:validationRules": [ + "int" + ] + }, { "@id": "bts:StudyDe-identificationMethodType", "@type": "rdfs:Class", @@ -332548,26 +332590,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:DCC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DCC", - "rdfs:subClassOf": [ - { - "@id": "bts:ToolInputFormat" - }, - { - "@id": "bts:ToolOutputFormat" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DCC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:DCD", "@type": "rdfs:Class", diff --git a/modules/dataCatalog/annotationProperty.csv b/modules/dataCatalog/annotationProperty.csv index 41c11638..9a31cae3 100644 --- a/modules/dataCatalog/annotationProperty.csv +++ b/modules/dataCatalog/annotationProperty.csv @@ -18,7 +18,7 @@ datePublished,Date data were published/available on Synapse.,,,FALSE,,,,schema.o funder,The entity(ies) responsible for funding the data contributors.,NIH,,FALSE,,,,schema.org/dataset,list like includedInDataCatalog,Link(s) to known data catalog(s) the dataset is included in.,,,FALSE,,,,schema.org/dataset,str license,"The terms and conditions underwhich the data are allowed to be accessed and used. Unless information for license is clear, this should default to UNKNOWN.","CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,schema.org/dataset,str -measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,FALSE,,,,schema.org/dataset,list like +measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,FALSE,,,,schema.org/dataset,list like species,"Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,schema.org/dataset,list like subject,Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme.,,,FALSE,,,,schema.org/dataset,list like title,The name of the dataset.,,,TRUE,,,,schema.org/dataset,str diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index ac6e5461..11b02a33 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -5,11 +5,11 @@ Dataset Description,Description of the dataset.,,,FALSE,,,,, Dataset Design,The overall design of the dataset.,,,FALSE,,,,, Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DCC, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like diff --git a/modules/file/annotationProperty.csv b/modules/file/annotationProperty.csv index 4c27d273..344d0f95 100644 --- a/modules/file/annotationProperty.csv +++ b/modules/file/annotationProperty.csv @@ -2,7 +2,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsO File Description,Description of the file.,,,FALSE,,,,,str File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,"The assay(s) the file is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +File Assay,"The assay(s) the file is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like @@ -15,6 +15,6 @@ File Longitudinal Sequence Identifier,"The order in which this file was collecte File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num -File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, +File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DCC, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like diff --git a/modules/geomxLevel1/annotationProperty.csv b/modules/geomxLevel1/annotationProperty.csv index f2068418..6c35602a 100644 --- a/modules/geomxLevel1/annotationProperty.csv +++ b/modules/geomxLevel1/annotationProperty.csv @@ -1,4 +1,4 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, +NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, NanoStringGeoMxDSPLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx DSP Assay Type,The assay type which was used for the GeoMx DSP pipeline.,"RNA nCounter, Protein nCounter, Protein NGS, RNA NGS",,FALSE,,,,HTAN, diff --git a/modules/geomxLevel2/annotationProperty.csv b/modules/geomxLevel2/annotationProperty.csv index 7fad7a72..d5ac0123 100644 --- a/modules/geomxLevel2/annotationProperty.csv +++ b/modules/geomxLevel2/annotationProperty.csv @@ -1,3 +1,3 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique diff --git a/modules/geomxRoi/annotationProperty.csv b/modules/geomxRoi/annotationProperty.csv index e6dc5a50..d98e7dce 100644 --- a/modules/geomxRoi/annotationProperty.csv +++ b/modules/geomxRoi/annotationProperty.csv @@ -1,5 +1,5 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw reads, NGS Stitched reads, NGS Aligned reads, NGS Deduplicated reads, NGS Trimmed reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", +NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", NanoStringGeoMXROISegmentAnnotation_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx Scan name,GeoMx Scan name (as appears in Segment Summary),,,TRUE,,,,HTAN,str GeoMx ROI Name,Name of Region of Interest corresponding to file. Multiple names should be comma-separated,,,TRUE,,,,HTAN,list like @@ -25,3 +25,5 @@ GeoMx No Template Control count,The number of reads detected by the GeoMx probe GeoMx Excluded Outlier Probes,The list of probes excluded from analysis.,,,FALSE,,,,STE,num GeoMx Limit of Quantification,The calculated limit of quantification associated with the segment.,,,FALSE,,,,STE,num GeoMx Sequencing Saturation,"The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. More specifically, this is the fraction of confidently mapped, valid spot-barcode, valid UMI reads that had a non-unique (spot-barcode, UMI, gene).",,,FALSE,,,,HTAN,num +GeoMx Tags,"The basename(s) or unique identifier(s) for FASTQ, RCC, or DCC file(s) associated with this ROI.",,,FALSE,,,,MC2/STE,str +GeoMx Tissue Stain,"Text description of the stain, fluorescent reporter, or channel used to select the boundaries of the ROI.",,,FALSE,,,,MC2/STE,str diff --git a/modules/mapping.yaml b/modules/mapping.yaml index 7e1a583e..d526ed0e 100644 --- a/modules/mapping.yaml +++ b/modules/mapping.yaml @@ -293,8 +293,10 @@ sequencingLevel1: src: sequencingLevel1/libraryLayout.csv - name: NGS Library Strategy src: sequencingLevel1/libraryStrategy.csv - - name: NGS Library Source - src: sequencingLevel1/librarySource.csv + - name: NGS Library Source Material + src: sequencingLevel1/librarySourceMaterial.csv + - name: NGS Library Source Molecule + src: sequencingLevel1/librarySourceMolecule.csv - name: NGS Library Selection Method src: sequencingLevel1/librarySelection.csv diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index 019a0fd0..9453ec94 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -8,7 +8,7 @@ Publication Year,Year of the publication,,,TRUE,,,,, Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like Publication Abstract,The abstract of the publication.,,,TRUE,,,,, -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, diff --git a/modules/sequencingLevel1/annotationProperty.csv b/modules/sequencingLevel1/annotationProperty.csv index 9fbcff2a..17e4b43a 100644 --- a/modules/sequencingLevel1/annotationProperty.csv +++ b/modules/sequencingLevel1/annotationProperty.csv @@ -1,12 +1,12 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, +Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, SequencingLevel1_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique NGS Sequencing Coverage,Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length),,,FALSE,,,,CDS/Genomic info,num NGS Read Length,"The average length of the sequencing reads. Can be integer, null",,,TRUE,,,,HTAN,num NGS Library Selection Method,How nucleic acid molecules are isolated.,"5-methylcytidine antibody, CAGE, rRNA Depletion, cDNA, cDNA oligo_dT, cDNA random priming, CF-H, CF-M, CF-S, CF-T, Poly-T Enrichment, ChIP, DNAse, HMPR, Hybrid Selection, Not applicable, Inverse rRNA, MBD2 protein methyl-CpG binding domain, miRNA Size Fractionation, MDA, MF, MNase, MSLL, Oligo-dT, Other, Padlock probes capture method, PCR, PolyA, RACE, Random, Random PCR, Reduced Representation, Repeat fractionation, Restriction Digest, RT-PCR, Size fractionation, Affinity Enrichment, Unspecified",,FALSE,,,,HTAN,str NGS Library Strategy,"The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)","AMPLICON, ATAC-seq, Bisulfite-Seq, ChIA-PET, ChIP-Seq, CLONE, CLONEEND, CTS, Spatial-tx, snATAC-Seq, DNase-Hypersensitivity, scMultiome, EST, FAIRE-seq, FINISHING, FL-cDNA, Hi-C, MBD-Seq, MeDIP-Seq, miRNA-Seq, MNase-Seq, MRE-Seq, ncRNA-Seq, Other, POOLCLONE, RAD-Seq, RIP-Seq, RNA-Seq, SELEX, DNA-Seq, ssRNA-seq, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, Tn-Seq, WCS, WGA, WGS, WXS",,TRUE,,,,CDS/sequencing,str -NGS Library Source,The type of source material being sequenced.,"Genomic, Genomic Single Cell, Metagenomic, Single Nucleus, Single Cell, Metatranscriptomic, Other, Synthetic, Transcriptomic, Transcriptomic Single Cell, Viral RNA",,TRUE,,,,CDS/sequencing,str -NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,CDS/sequencing,str +NGS Library Source Material,The type of source material being sequenced.,"Bulk Cells, Bulk Tissue, Bulk Nuclei, Single-nuclei, Single-cells, Not Reported",,TRUE,,,,GC Data Model v6.0.2/genomic info/library_source_material,str +NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,GC Data Model v6.0.2/genomic info/library_layout,str NGS Library Preparation Kit Name,Name of Library Preparation Kit. String,,,FALSE,,,,HTAN,str NGS Library Preparation Kit Vendor,Vendor of Library Preparation Kit. String,,,FALSE,,,,HTAN,str NGS Library Preparation Kit Version,Version of Library Preparation Kit. String,,,FALSE,,,,HTAN,str @@ -17,3 +17,4 @@ NGS Library Preparation Days from Index,Number of days between sample for assay NGS Sequencing Library Construction Days from Index,Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable',,,TRUE,,,,HTAN,regex match \d+$|Not\sApplicable$|unknown$ NGS Unique Bases,Count of unique basecalls present in the data.,,,FALSE,,,,CDS/Sequencing,num NGS Raw Reads,Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file. ,,,FALSE,,,,CDS/Sequencing,num +NGS Library Source Molecule,The source of nucleic acids represented in the sequencing library. ,"Genomic DNA, Metagenomic, Metatranscriptomic, Not Reported, Transcriptome, Viral RNA",,,,,,GC Data Model v6.0.2/genomic info/library_source_molecule,str diff --git a/modules/sequencingLevel1/librarySource.csv b/modules/sequencingLevel1/librarySource.csv deleted file mode 100644 index 2b8c29f4..00000000 --- a/modules/sequencingLevel1/librarySource.csv +++ /dev/null @@ -1,12 +0,0 @@ -ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes -Genomic,Genomic DNA (includes PCR products from genomic DNA),,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Genomic Single Cell,,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Metagenomic,Mixed material from metagenome,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Single Nucleus,,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Single Cell,,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Metatranscriptomic,Transcription products from community targets,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Other,"Other, unspecified, or unknown library source material (please include additional info in the β€œdesign description”)",,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Synthetic,Synthetic DNA,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Transcriptomic,"Transcription products or non genomic DNA (EST, cDNA, RT-PCR, screened libraries)",,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Transcriptomic Single Cell,,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, -Viral RNA,Viral RNA,,,FALSE,,NGS Library Source,,CDS v5.0.4/Genomic Info-library_source,,,,,, diff --git a/modules/sequencingLevel1/librarySourceMaterial.csv b/modules/sequencingLevel1/librarySourceMaterial.csv new file mode 100644 index 00000000..3fd02fdb --- /dev/null +++ b/modules/sequencingLevel1/librarySourceMaterial.csv @@ -0,0 +1,7 @@ +ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +Bulk Cells,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Bulk Tissue,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Bulk Nuclei,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Single-nuclei,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Single-cells,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Not Reported,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, diff --git a/modules/sequencingLevel1/librarySourceMolecule.csv b/modules/sequencingLevel1/librarySourceMolecule.csv new file mode 100644 index 00000000..fc06c600 --- /dev/null +++ b/modules/sequencingLevel1/librarySourceMolecule.csv @@ -0,0 +1,7 @@ +ο»ΏAttribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules,Nonpreferred Terms,Ontology Identifier,Ontology Url,NCIt Code,Notes +Genomic DNA,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Metagenomic,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Metatranscriptomic,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Not Reported,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Transcriptome,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, +Viral RNA,,,,,,,,GC Data Model v6.0.2/Genomic Info/library_source_material,,,,,, diff --git a/modules/sequencingLevel2/annotationProperty.csv b/modules/sequencingLevel2/annotationProperty.csv index 5afc2097..68415866 100644 --- a/modules/sequencingLevel2/annotationProperty.csv +++ b/modules/sequencingLevel2/annotationProperty.csv @@ -1,5 +1,5 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, +Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, SequencingLevel2_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique NGS Stitched Reads,"Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads",,,FALSE,,,,HTAN,num NGS Aligned Reads,Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.,,,FALSE,,,,HTAN,num diff --git a/modules/shared/GC_v6.0.4_MC2_11.0.0_map_6-24-25.csv b/modules/shared/GC_v6.0.4_MC2_11.0.0_map_6-24-25.csv new file mode 100644 index 00000000..77aa4f9b --- /dev/null +++ b/modules/shared/GC_v6.0.4_MC2_11.0.0_map_6-24-25.csv @@ -0,0 +1,276 @@ +Node,Property,MC2 attribute,Transformation or alternate source,Required and present,Type,CDEFullName,CDEVersion,CDECode,CDEOrigin,Acceptable Values,Required,Description,Src,Key Property +program,program_name,Consortium Full Name,,TRUE,string,Program Name Text,2,11444542,caDSR,,required,"The name of the program under which related studies will be grouped, in full text and unabbreviated form, exactly as it will be displayed within the UI.",Internally-curated,FALSE +program,program_acronym,Grant Consortium Name,,TRUE,string,,,,,,required,"The name of the program under which related studies will be grouped, expressed in the form of the acronym by which it will identified within the UI.
This property is used as the key via which study records can be associated with the appropriate program during data loading, and to identify the correct records during data updates.",Internally-curated,TRUE +program,program_short_description,Consortium Description,,FALSE,string,,,,,,preferred,"An abbreviated, single sentence description of the program.",Internally-curated,FALSE +program,program_full_description,Consortium Description,,FALSE,string,,,,,,preferred,"A more detailed, multiple sentence description of the program.",Internally-curated,FALSE +program,program_external_url,Website,,FALSE,string,,,,,,preferred,The external url to which users should be directed in order to learn more about the program.,Internally-curated,FALSE +program,program_sort_order,None,,FALSE,integer,,,,,,optional,An arbitrarily-assigned value used to dictate the order in which programs are displayed within the application's UI.,Internally-curated,FALSE +program,program_short_name,Grant Consortium Name,,FALSE,string,Program Short Name Text,2,11459801,caDSR,,optional,An acronym or abbreviated form of the title of a broad framework of goals under which related projects or other research activities are grouped. Example - CPTAC,,FALSE +program,institution,Grant Institution Name,,FALSE,string,,,,,,preferred,TBD,,FALSE +program,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +study,study_name,Study Name,,TRUE,string,Study Name Text,2,11459810,caDSR,,required,Official name of study,,FALSE +study,study_acronym,Study_id,,FALSE,string,Study Short Name Text,2,11459812,caDSR,,optional,Short acronym or other study desginator,,FALSE +study,study_description,Study Description,,FALSE,string,,,,,,preferred,Human-readable study description,,FALSE +study,short_description,None,,FALSE,string,,,,,,preferred,Short description that will identify the dataset on public pagesA clear and concise formula for the title would be like:{methodology} of {organism}: {sample info},,FALSE +study,study_external_url,None,CCKP grant details page?,FALSE,url,,,,,,preferred,Website or other url relevant to study,,FALSE +study,primary_investigator_name,Study Investigator,,FALSE,string,,,,,,preferred,Name of principal investigator,,FALSE +study,primary_investigator_email,None,Provide manually,FALSE,string,,,,,,preferred,Email of principal investigator,,FALSE +study,co_investigator_name,Study Investigator,,FALSE,string,,,,,,optional,Name of co-principal investigator,,FALSE +study,co_investigator_email,None,Provide manually,FALSE,string,,,,,,optional,Email of co-principal investigator,,FALSE +study,phs_accession,Study dbGaP Accession Id,,TRUE,"{""pattern"":""^phs[0-9]+$""}",Research Activity dbGaP Accession Number Identifier,1,11524544,caDSR,,required,PHS accession number (a.k.a dbGaP accession),,TRUE +study,bioproject_accession,None,,FALSE,"{""pattern"":""^PRJNA[0-9]+$""}",,,,,,preferred,NCBI BioProject accession ID,,FALSE +study,index_date,Study Index Date,,FALSE,string,,,,,"[""date_of_diagnosis"",""date_of_enrollment"",""date_of_collection"",""date_of_birth""]",optional,"Index date (Day 0) to which all dates are relative, for this study",,FALSE +study,cds_requestor,None,,FALSE,string,,,,,,optional,Identifies the user requesting storage in GC,,FALSE +study,funding_agency,Constant,National Cancer Institute,FALSE,string,Funding Agency Organization Name Text,2,11524545,caDSR,,preferred,Funding agency of the requestor study,,FALSE +study,funding_source_program_name,Consortium Full Name,,FALSE,string,Funding Agency Program Name Text,2,11524546,caDSR,,preferred,The funding source organization/sponsor,,FALSE +study,grant_id,GrantView_id,,FALSE,string,Grant Funding Identifier Number,2,3434057,caDSR,,preferred,Grant or contract identifier,,FALSE +study,clinical_trial_system,None,,FALSE,string,,,,,,optional,Organization that provides clinical trial identifier (if studyis a clinical trial),,FALSE +study,clinical_trial_identifier,None,,FALSE,string,Clinical Trial Study Protocol Unique Identifier,1,14673514,caDSR,,optional,Study identifier in the given clinical trial system,,FALSE +study,clinical_trial_arm,None,,FALSE,string,Clinical Trial Treatment Arm Text,2,11524548,caDSR,,optional,"Arm of clinical trial, if appropriate",,FALSE +study,organism_species,Biospecimen Species,Select from controlled vocab,FALSE,string,Sample Organism Type,1,6118266,caDSR,"[""Canine"",""Cell Line"",""Human"",""Mouse""]",preferred,Species binomial of study participants,,FALSE +study,adult_or_childhood_study,Derived,Base on age of individuals or biospecimen,FALSE,string,Subject Legal Adult Or Pediatric Participant Type,1,11524549,caDSR,"[""Adult - legal age"",""Pediatric""]",preferred,"Study participants are adult, pediatric, or other",,FALSE +study,data_types,None,,FALSE,list,,,,,,optional,Data types for storage,,FALSE +study,file_types,None,,FALSE,list,,,,,,optional,File types for storage,,FALSE +study,data_access_level,Study Data Tier,,FALSE,string,,,,,"[""open"",""controlled"",""mixed""]",preferred,"Is data open, controlled, or mixed?",,FALSE +study,cds_primary_bucket,None,,FALSE,string,,,,,,preferred,The primary bucket for depositing data,,FALSE +study,cds_secondary_bucket,None,,FALSE,string,,,,,,optional,Secondary bucket for depositing data (non-sequence files),,FALSE +study,cds_tertiary_bucket,None,,FALSE,string,,,,,,optional,Secondary bucket for depositing data (non-sequence files),,FALSE +study,number_of_participants,Study Number of Participants,,TRUE,number,Research Activity Unique Subjects Count,1,11555662,caDSR,,required,How many participants in the study,,FALSE +study,number_of_samples,DSP Number of Samples,,TRUE,number,Research Activity Sample Size Count,1,11555663,caDSR,,required,How many total samples in the study,,FALSE +study,study_data_types,File Assay,"set(file_df[""File Assay""].to_list())",TRUE,list,Data Collection Scientific Data Type Category,1,14824731,caDSR,"[""Genomics"",""Imaging"",""Proteomics"",""Image Annotation"",""Publication"",""Supplemental"",""Sequence Data"",""Pathology Imaging"",""Radiology Imaging"",""Transcriptome Profiling"",""Gene Expression Analysis"",""Chromatin"",""Clinical Measure Instrument"",""Copy Number Variation"",""Mass Spectrometry"",""Methylation Analysis"",""Microarray"",""Population Science"",""Protein Expression"",""Proteomic Profile"",""Quality Control"",""Not Reported"",""Archive"",""Genomic Structural Variation"",""Biospecimen"",""Clinical""]",required,Types of scientific data in the study,,FALSE +study,file_types_and_format,File Format,"set(file_df[""File Format""].to_list())",TRUE,list,,,,,,required,Specific kinds of files in the dataset that will be uploaded to GC,,FALSE +study,size_of_data_being_uploaded,dataFileSizeBytes,"sum(dataset_df[""dataFileSizeBytes""])",FALSE,"{""value_type"":""number"",""units"":[""GB"",""TB"",""PB""]}",,,,,,preferred,Size of the data being uploaded to GC,,FALSE +study,acl,Study Data Use Codes,,FALSE,string,Electronic Data File Access Level Text,2,11555664,caDSR,,optional,open or restricted access to data,,FALSE +study,study_access,Study Data Tier,,TRUE,string,,,,,"[""Open"",""Controlled""]",required,Study access,,FALSE +study,authz,None,,FALSE,string,,,,,,optional,multifactor authorization,,FALSE +study,study_version,Study dbGaP Accession Id,"study_df[""Study dbGaP Accession Id""].split(""."")[1]",TRUE,list,,,,,,required,The version of the phs accession,,FALSE +study,role_or_affiliation,None,Of the submitter,FALSE,string,Person Affiliation Role Text Type,2,2201713,caDSR,"[""Medical Physicist"",""Administrator or Manager"",""Respondent"",""Data Submitter"",""ENABLE Coach"",""Alternative Principal Investigator"",""SHE Instructor"",""Coordinator"",""Nurse Coach"",""Site Personnel"",""Interventional Radiologist"",""Clinical Nurse Specialist"",""Infusion Nurse"",""Gastroenterologist"",""Primary care physician"",""PCP"",""Medical Oncologist"",""Oncology Nurse"",""Nurse Practitioner"",""Physician Assistant"",""Surgical Oncologist"",""Developer"",""Maintainer"",""Site Coordinator"",""Principal Investigator"",""Funded Principal Investigator"",""Contract Principal Investigator"",""Study Chair"",""Site Leader"",""Scientific Monitor"",""Review Specialist"",""Review Liaison"",""Protocol Review Chair"",""Protocol Lead Investigator"",""Protocol Chair"",""Project Officer"",""Program Specialist"",""Medical Monitor"",""Grant Specialist"",""Contract Officer"",""Co-Project Officer"",""Concept Review Chair"",""Clinical Research Associate"",""Mail to contact"",""Principal Investigator (MGR)"",""PMB Drug Company Contact"",""Grant Investigator"",""Secondary CDUS Contact"",""Primary CDUS Contact"",""Division Head"",""Group Coordinator"",""ABS Coordinator"",""AdEERS Contact"",""Account Administrator"",""Adverse Event Coordinator"",""CEP Member"",""Agent Inspector"",""CDU Web Contact"",""Registration Coordinator"",""Address Module Coordinator"",""Head of Division"",""Participant Chief"",""Branch Chief"",""Shipping Designee"",""Protocol Specialist"",""Drug Company Contact"",""Program Director"",""Primary Shipping Designee"",""Checklist Supervisor"",""Checklist Completer"",""Site Investigator"",""Employee"",""Protocol Chair at an Organization"",""Mail Contact (Mgr)"",""Agent Expert"",""Associate"",""Investigator"",""Data Manager"",""Social Worker"",""Referring Physician"",""Physician"",""Pharmacist"",""Patient"",""Nurse"",""Contact Person"",""Abstractor"",""Submitting Pathologist"",""Subject Recruiter"",""Sponsor Medical Expert"",""Reviewing Pathologist"",""Radiation Oncologist"",""Project Coordinator"",""Referring Pathologist"",""Regulatory Coordinator"",""Representative Investigator"",""Research Clinician"",""Research Nurse"",""Registrar"",""Surgeon"",""Research Pathologist"",""Reviewing Radiologist"",""Site Representative Investigator"",""Sponsor/Medical Expert"",""Statistician"",""Study Chairperson"",""Study Coordinator"",""Community Educator"",""Guardian"",""Laboratory Director"",""Laboratory Technologist"",""Lead Drug Monitor"",""Legal Representative of the Sponsor"",""Neuropathologist"",""Pharmaceutical Liaison"",""Pharmacologist"",""Physicist"",""Population Member"",""Practitioner Assigned"",""Protocol Author"",""Sponsor"",""Treating Physician"",""Admitting Physician"",""Attending Physician"",""Audiologist"",""Bronchoscopist"",""Central Reviewer"",""Clinical Coordinator"",""Co-Investigator"",""Consulting Physician"",""Coordinating Investigator"",""Evaluator"",""Practitioner"",""Translator"",""Participant"",""Interpreter"",""Interviewer"",""Health Care Provider"",""Grant Principal Investigator"",""Letter of Intent Review Chair"",""Mail Contact""]",optional,The text that describes the distinguishable characteristics of the action or activity assigned to or required or expected of a person in a formal association with a group or organization.,,FALSE +study,title,None,Of the submitter,FALSE,string,Person Name Prefix Abbreviation Text,1,2663165,caDSR,"[""Sr."",""Rev."",""R."",""Prof."",""Ms."",""Mrs."",""Mr."",""Miss"",""Fr."",""Dr."",""Ch."",""Br."",""Bish.""]",optional,The abbreviation that represents an affix occurring at or before the beginning of an individual's name.,,FALSE +study,first_name,None,Of the submitter,FALSE,string,Person Given/First Name,2,2179589,caDSR,,optional,A word or group of words indicating a person's first (personal or given) name; the name that precedes the surname. Synonym = Given Name.,,FALSE +study,middle_name,None,Of the submitter,FALSE,string,Person Middle Name,2,2179590,caDSR,,optional,A means of identifying an individual by using a word or group of words indicating a person's middle name.,,FALSE +study,last_name,None,Of the submitter,FALSE,string,Person Family/Last Name,2,2179591,caDSR,,optional,"A means of identifying an individual by using a word or group of words indicating a person's last (family) name. Synonym = Last Name, Surname.",,FALSE +study,suffix,None,Of the submitter,FALSE,string,Individual Genea,2,2006475,caDSR,"[""I"",""Sr."",""Jr."",""IV"",""III"",""II""]",optional,Text term to represent an individual's position in a family lineage or pedigree.,,FALSE +study,email,None,Of the submitter,FALSE,string,Person Email Address Text,1,2517550,caDSR,,optional,The string of characters that represents the electronic mail address of a person.,,FALSE +study,clinical_trial_repository,None,,FALSE,string,,,,,,optional,The name of the organization that provides the clinical trial identifier.,,FALSE +study,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +participant,study_participant_id,Derived,{study.crdc_id}_{participant_id},TRUE,string,,,,,,required,"The property study_participant_id is a compound property, combining the property participant_id and the parent property study.phs_accession.It is the ID property for the node participant. The reason why we are doing that is because is some cases, there are same participant id in different studies repersent different participants.",,TRUE +participant,participant_id,"Individual Key",,TRUE,string,Subject Data Origin Identifier,1,12220014,caDSR,,required,"A number or a string that may contain metadata information, for a participantwho has taken part in the investigation or study.",,FALSE +participant,race,None,,FALSE,string,Race Category Text,1,2192199,caDSR,"[""Not allowed to collect"",""Black or African American"",""White"",""Asian"",""Unknown"",""Native Hawaiian or other Pacific Islander"",""American Indian or Alaska Native"",""Not Reported""]",preferred,OMB Race designator,,FALSE +participant,sex,"Biospecimen Sex, Individual Sex, Model Sex",,TRUE,string,Person Sex at Birth Category,1,7572817,caDSR,"[""X"",""Don't know"",""Prefer not to answer"",""None of these describe me"",""Intersex"",""Decline to answer"",""Unknown"",""Female"",""Male""]",required,Person Sex at Birth Category,,FALSE +participant,ethnicity,None,,FALSE,string,Ethnic Group Category Text,2,2192217,caDSR,"[""Not allowed to collect"",""Unknown"",""Not reported"",""Not Hispanic or Latino"",""Hispanic or Latino""]",preferred,OMB Ethnicity designator,,FALSE +participant,dbGaP_subject_id,Individual dbGaP Subject Id,,FALSE,string,Research Activity dbGaP Subject Identifier Text,1,14940691,caDSR,,optional,Identifier for the participant as assigned by dbGaP,,FALSE +participant,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +diagnosis,study_diagnosis_id,Derived,{participant.study_participant_id}_{diagnosis_id},TRUE,string,,,,,,required,"The property study_diagnosis_id is a compound property, combining the property diagnosis_id and the parent property participant.study_participant_id. It is the ID property for the node diagnosis.",,TRUE +diagnosis,diagnosis_id,Derived,"diag_1...diag_n, where n = # of diagnosis entries",FALSE,string,,,,,,optional,Internal identifier,,FALSE +diagnosis,disease_type,"Biospecimen Disease Type, Individual Disease Type, Model Disease Type",,FALSE,string,Diagnosis Disease or Disorder Morphology Disease,1,13471160,caDSR,"[""Epithelial Neoplasms, NOS"",""Transitional Cell Papillomas and Carcinomas"",""Soft Tissue Tumors and Sarcomas, NOS"",""Paragangliomas and Glomus Tumors"",""Osseous and Chondromatous Neoplasms"",""Nevi and Melanomas"",""Neoplasms, NOS"",""Miscellaneous Bone Tumors"",""Cystic, Mucinous and Serous Neoplasms"",""Granular Cell Tumors and Alveolar Soft Part Sarcomas"",""Complex Mixed and Stromal Neoplasms"",""Adnexal and Skin Appendage Neoplasms"",""Unknown"",""Trophoblastic neoplasms"",""Thymic Epithelial Neoplasms"",""Synovial-like Neoplasms"",""Squamous Cell Neoplasms"",""Plasma Cell Neoplasm"",""Odontogenic Tumors"",""Not Reported"",""Not Otherwise Specified"",""Not Applicable"",""Neuroepitheliomatous Neoplasms"",""Nerve Sheath Tumors"",""Myxomatous Neoplasms"",""Myomatous Neoplasms"",""Myelodysplastic Syndromes"",""Mucoepidermoid Neoplasms"",""Miscellaneous Tumors"",""Mesothelial Neoplasms"",""Meningiomas"",""Mast Cell Neoplasm"",""Lymphatic Vessel Tumors"",""Lipomatous Neoplasms"",""Leukemias"",""Immunoproliferative Diseases"",""Gliomas"",""Giant Cell Tumors"",""Germ Cell Neoplasms"",""Fibromatous Neoplasms"",""Fibroepithelial Neoplasms"",""Ductal and Lobular Neoplasms"",""Blood Vessel Tumors"",""Basal Cell Neoplasms"",""Acinar Cell Neoplasms"",""Adenomas and Adenocarcinomas""]",optional,Type of disease [?],,FALSE +diagnosis,vital_status,Individual Last Known Vital Status,,FALSE,string,Participant Vital Status Type,1,2847330,caDSR,"[""Not reported"",""Alive"",""Dead"",""Unknown"",""Unspecified""]",optional,Vital status as of last known follow up,,FALSE +diagnosis,primary_diagnosis,"Biospecimen Primary 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Turbinate"",""Nasal Septum"",""Nasal Cavity"",""Nasal Cartilage"",""Nasal Bone"",""Myometrium"",""Myocardium"",""Musculus Latissimus Dorsi"",""Muscle"",""Mucosa of the Upper Lip"",""Mucosa of the Lower Lip"",""Mucosa of the Lip"",""Mons Pubis"",""Minor Salivary Gland"",""Middle Third of the Esophagus"",""Middle Lobe of the Right Lung"",""Middle Ear"",""Middle Cranial Fossa"",""Metatarsal Bone"",""Metacarpal Bone"",""Mesovarium"",""Mesonephros"",""Mesonephric Duct"",""Mesentery"",""Mesenteric Lymph Node"",""Mesenteric Artery"",""Mesencephalon"",""Mentum"",""Meniscus Medialis"",""Meniscus Lateralis"",""Meninges"",""Meibomian Gland"",""Medulla Oblongata"",""Mediastinum"",""Mediastinal Lymph Node"",""Median Nerve"",""Meckel Diverticulum"",""Maxillary Sinus"",""Maxilla"",""Masseter Muscle"",""Mandible"",""Mammary Gland"",""Male Prepuce"",""Male Genitalia"",""Main Bronchus"",""Lymphatic"",""Lymph Node of Inguinal Region or Leg"",""Lymph Node"",""Lung"",""Lumbosacral Plexus"",""Lumbar Nerve"",""Lower-Outer Quadrant of the Breast"",""Lower-Inner Quadrant of the Breast"",""Lower Third of the Esophagus"",""Lower Lobe of the Lung"",""Lower Gingiva"",""Lower Extremity"",""Lobule of the Auricle"",""Liver"",""Lip"",""Lingula of the Lung"",""Lingual Tonsil"",""Ligament"",""Lesser Curvature of the Stomach"",""Lens"",""Leg Skin"",""Lateral Wall of the Pharynx"",""Lateral Wall of the Oropharynx"",""Lateral Wall of the Nasopharynx"",""Lateral Wall of the Bladder"",""Lateral Ventricle"",""Larynx"",""Laryngeal Cartilage"",""Large Intestine"",""Lacrimal Sac"",""Lacrimal Gland"",""Labium Minus"",""Labium Majus"",""Labium"",""Knee Skin"",""Knee Joint"",""Kidney"",""Joint"",""Jejunum"",""Jaw Joint"",""Jaw Bone"",""Isthmus Uteri"",""Islet of Langerhans"",""Ischium"",""Ischiorectal Fossa"",""Iris"",""Intrathoracic Lymph Node"",""Intraocular Route of Administration"",""Intrahepatic Bile Duct"",""Intra-Abdominal Lymph Node"",""Intestine"",""Intervertebral Disc"",""Internal Nare"",""Internal Mammary Lymph Node"",""Internal Mammary Artery"",""Internal Iliac Lymph Node"",""Internal Capsule"",""Intercostal Nerve"",""Intercostal Muscle"",""Intercostal Lymph Node"",""Inner Ear"",""Inner Canthus"",""Inguinal Region"",""Inguinal Lymph Node"",""Infratentorial Brain"",""Infraclavicular Region"",""Infraclavicular Lymph Node"",""Inferior Vena Cava"",""Ilium"",""Iliopsoas Muscle"",""Iliac Vein"",""Iliac Lymph Node"",""Iliac Artery"",""Ileum"",""Ileocecal Valve"",""Hypothalamus"",""Hypopharynx"",""Hypoglossal Nerve"",""Hyoid Bone"",""Hymen"",""Humerus"",""Hippocampus"",""Hip Joint"",""Hip"",""Hepatic Lymph Node"",""Hepatic Flexure"",""Hepatic Duct"",""Hepatic"",""Hematopoietic System"",""Helix"",""Heart"",""Head Skin"",""Head of the Pancreas"",""Head and Neck Lymph Node"",""Hard Palate"",""Hand Skin"",""Hand Phalanx"",""Hand Digit 1"",""Hand"",""Greater Curvature of the Stomach"",""Gluteus Maximus"",""Glottis"",""Glossopharyngeal Nerve"",""Globus Pallidus"",""Glans Penis"",""Gland of Littre"",""Gingiva"",""Gastrointestinal Tract"",""Gastroesophageal Junction"",""Gastrocnemius Muscle"",""Gastric Lymph Node"",""Gastric Cardia"",""Gallbladder"",""Fundus Uteri"",""Fundus of the Stomach"",""Frontal Sinus"",""Frontal Pole"",""Frontal Lobe"",""Frontal Bone"",""Fourth Ventricle"",""Forehead"",""Forearm"",""Foot Skin"",""Foot Phalanx"",""Foot Bone"",""Foot"",""Floor of Mouth"",""Flank"",""Fingernail"",""Finger"",""Fibula"",""Fibrous Tissue"",""Femur"",""Femoral Nerve"",""Femoral Lymph Node"",""Femoral Artery"",""Female Genitalia"",""Fascia"",""Falx Cerebri"",""Falx Cerebelli"",""False Vocal Cord"",""Fallopian Tube"",""Facial Nerve"",""Facial Bone"",""Eyelid"",""Eyebrow"",""Eye"",""Extrahepatic Bile Duct"",""External Upper Lip"",""External Nose"",""External Lower Lip"",""External Lip"",""External Ear"",""External Acoustic Meatus"",""Eustachian Tube"",""Ethmoid Sinus"",""Ethmoid Bone"",""Esophagus"",""Epitrochlear Lymph Node"",""Epiglottis"",""Epidural Spinal Canal Space"",""Epididymis"",""Epicardium"",""Ependyma"",""Endometrium"",""Endometrial Stroma"",""Endocrine Gland"",""Endocervix"",""Endocardium"",""Elbow Skin"",""Elbow Joint"",""Ectocervix"",""Ear Skin"",""Ear"",""Dura Mater"",""Duodenum"",""Ductus Santorini"",""Duct of Gartner"",""Dome of the Bladder"",""Diaphragmatic Lymph Node"",""Diaphragm"",""Descending Colon"",""Cystic Duct"",""Cuneiform Cartilage"",""Cul-de-sac"",""Cricoid Cartilage"",""Craniopharyngeal Duct"",""Cranial Nerve"",""Cowper Gland"",""Costovertebral Joint"",""Costal Cartilage"",""Corpus Uteri"",""Corpus Striatum"",""Corpus Callosum"",""Corneoscleral Limbus"",""Cornea"",""Coracobrachialis"",""Conus Medullaris"",""Connective Tissue"",""Conjunctiva"",""Concha"",""Common Bile Duct"",""Commissure of the Lip"",""Colon"",""Cochlear Nerve"",""Coccyx"",""Clitoris"",""Ciliary Body"",""Choroid Plexus of the Third Ventricle"",""Choroid Plexus of the Lateral Ventricle"",""Choroid Plexus of the Fourth Ventricle"",""Choroid Plexus"",""Choroid"",""Chest Wall"",""Chest"",""Cheek"",""Cervix Uteri"",""Cervical Lymph Node"",""Cervical Gland"",""Cervical Esophagus"",""Ceruminous Gland"",""Cerebral White Matter"",""Cerebral Peduncle"",""Cerebral Meninges"",""Cerebral Hemisphere"",""Cerebral Cortex"",""Cerebellum"",""Cerebellopontine Angle"",""Central Portion of the Breast"",""Central Nervous System"",""Celiac Lymph Node"",""Celiac Artery"",""Cecum"",""Cauda Equina"",""Cartilage"",""Carpal Region"",""Carpal Bone"",""Carotid Body"",""Carotid Artery"",""Carina"",""Cardiac Ventricle"",""Cardiac Atrium"",""Calf"",""Calcaneum"",""C2 Vertebra"",""C1 Vertebra"",""Buttock"",""Buccal Mucosa"",""Bronchus"",""Bronchiole"",""Bronchial Lymph Node"",""Broad Ligament"",""Breast"",""Branchial Cleft Remnant"",""Brain Ventricle"",""Brain Stem"",""Brain Dura Mater"",""Brain"",""Brachialis"",""Brachial Plexus"",""Brachial Lymph Node"",""Bone of the Extremity"",""Bone Marrow"",""Bone"",""Body of the Penis"",""Body of the Pancreas"",""Body of Stomach"",""Blood Vessel"",""Blood"",""Bladder Trigone"",""Bladder Neck"",""Bladder"",""Biliary Tract"",""Bile Duct"",""Bile Canaliculus"",""Abdominal Aorta"",""Abdominal Esophagus"",""Abdominal Muscle"",""Abdominal Skin"",""Abdominal Wall"",""Abducens Nerve"",""Accessory Nerve"",""Acetabulum"",""Acromioclavicular Joint"",""Adipose Tissue"",""Adrenal Cortex"",""Adrenal Gland"",""Adrenal Medulla"",""Ampulla of Vater"",""Anal Canal"",""Anal Transitional Zone"",""Ankle Joint"",""Ankle Skin"",""Antecubital Region"",""Anterior Cranial Fossa"",""Anterior Mediastinum"",""Anterior Surface of the Epiglottis"",""Anterior Wall of the Bladder"",""Anterior Wall of the Nasopharynx"",""Antrum Pylori"",""Anus"",""Aorta"",""Aortocaval Lymph Node"",""Apex of the Tongue"",""Aponeurosis"",""Appendage of the Uterus"",""Appendix"",""Areola"",""Arm Skin"",""Artery"",""Articular Cartilage"",""Aryepiglottic Fold"",""Arytenoid Cartilage"",""Ascending Colon"",""Autonomic Nervous System"",""Axilla"",""Axillary Artery"",""Axillary Lymph Node"",""Axillary Tail of the Breast"",""Back"",""Bartholin Gland"",""Basal Ganglia"",""Base of the Tongue"",""Biceps""]",optional,"The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).",,FALSE +diagnosis,site_of_resection_or_biopsy,Biospecimen Site of Resection or Biopsy,,FALSE,string,Disease Site of Resection or Biopsy Uberon Identifier,1,14883054,caDSR,"[""Biceps Femoris"",""Wrist Skin"",""Wrist Joint"",""Wall of the Pharynx"",""Waldeyer's Tonsillar Ring"",""Vulva"",""Vocal Cord"",""Visceral Pleura"",""Vertebral Column"",""Vertebra"",""Vermis"",""Vena Cava"",""Vein"",""Vas Deferens"",""Vallecula"",""Vagus Nerve"",""Vaginal Fornix"",""Vagina"",""Uvula"",""Uvea"",""Uterus"",""Uterine Ligament"",""Uterine Gland"",""Urethra"",""Ureteropelvic Junction"",""Ureteric Orifice"",""Ureter"",""Urachus"",""Upper-Outer Quadrant of the Breast"",""Upper-Inner Quadrant of the Breast"",""Upper Third of the Esophagus"",""Upper Lobe of the Lung"",""Upper Gingiva"",""Upper Extremity"",""Undescended Testes"",""Uncus"",""Umbilicus"",""Ulnar Nerve"",""Ulnar Artery"",""Ulna"",""Tunica Vaginalis"",""Trunk"",""True Vocal Cord"",""Trochlear Nerve"",""Trigeminal Nerve"",""Triceps Brachii"",""Trapezius Muscle"",""Transverse Colon"",""Tragus"",""Tracheobronchial Lymph Node"",""Trachea"",""Tooth Socket"",""Tonsillar Pillar"",""Tonsillar Fossa"",""Tongue"",""Toenail"",""Toe"",""Tibia"",""Thyroid Gland"",""Thyroid Cartilage"",""Thyroglossal Duct"",""Thymus Gland"",""Thorax"",""Thoracic Lymph Node"",""Thoracic Esophagus"",""Thoracic Duct"",""Third Ventricle"",""Thigh"",""Thalamus"",""Testis"",""Tentorium Cerebelli"",""Tendon Sheath"",""Tendon"",""Temporal Lobe"",""Temporal Bone"",""Tarsal Bone"",""Tail of the Pancreas"",""Synovial Fluid"",""Synovial Bursa"",""Sympathetic Nervous System"",""Supratentorial Brain"",""Suprasellar Region"",""Supraglottis"",""Supraclavicular Lymph Node"",""Supraclavicular"",""Superior Wall of the Nasopharynx"",""Superior Vena Cava"",""Submandibular Lymph Node"",""Submandibular Gland"",""Submandibular Duct"",""Sublingual Salivary Gland"",""Sublingual Lymph Node"",""Subglottis"",""Subcutis"",""Subclavian Artery"",""Stomach"",""Sternocostal Joint"",""Sternocleidomastoid Muscle"",""Splenic Hilar Lymph Node"",""Splenic Flexure"",""Spleen"",""Spinal Nerve"",""Spinal Meninges"",""Spinal Cord Dura Mater"",""Spinal Cord"",""Sphincter of Oddi"",""Sphenoid Sinus"",""Sphenoid Bone"",""Spermatic Cord"",""Small Intestine"",""Skullcap"",""Skull"",""Skin of the Upper Limb and Shoulder"",""Skin of the Trunk"",""Skin of the Scalp and Neck"",""Skin of the Lower Limb and Hip"",""Skin of the Lip"",""Skin of the Face"",""Skin Of The Axilla"",""Skin"",""Skeletal Muscle Tissue"",""Sigmoid Colon"",""Shoulder Joint"",""Shoulder Girdle"",""Shoulder"",""Seminal Vesicle"",""Sella Turcica"",""Scrotum"",""Sclera"",""Sciatic Nerve"",""Scapula"",""Scalp"",""Scalene Lymph Node"",""Salivary Gland"",""Sacral Plexus"",""Sacral Nerve"",""Sacral Lymph Node"",""Sacral Bone"",""Round Ligament of the Uterus"",""Retropharyngeal Lymph Node"",""Retroperitoneum"",""Retroperitoneal Lymph Node"",""Retromolar Trigone"",""Retina"",""Reticuloendothelial System"",""Renal Pelvis"",""Renal Calyx"",""Renal Artery"",""Renal"",""Rectus Abdominis"",""Rectum"",""Rectosigmoid Region"",""Rectosigmoid Colon"",""Rathke Pouch"",""Radius Bone"",""Radial Nerve"",""Radial Artery"",""Quadriceps Muscle of the Thigh"",""Pyriform Sinus"",""Pylorus"",""Putamen"",""Pulmonary Hilar Lymph Node"",""Pulmonary"",""Pubic Symphysis"",""Pubic Bone"",""Psoas Muscle"",""Prostatic Utricle"",""Prostate Gland"",""Preauricular Lymph Node"",""Posterior Wall of the Pharynx"",""Posterior Wall of the Oropharynx"",""Posterior Wall of the Nasopharynx"",""Posterior Wall of the Hypopharynx"",""Posterior Wall of the Bladder"",""Posterior Mediastinum"",""Posterior Cranial Fossa"",""Postcricoid Region"",""Portal Lymph Node"",""Popliteal Lymph Node"",""Pons Varolii"",""Pleura"",""Plantar Region"",""Plantar Fascia"",""Placenta"",""Pituitary Gland"",""Pineal Gland"",""Pia Mater"",""Pharynx"",""Pharyngeal Tonsil"",""Peritoneum"",""Peritoneal Cavity"",""Peripheral Nerve"",""Perineum"",""Pericardium"",""Penis"",""Pelvis"",""Pelvic Lymph Node"",""Pectoralis Major"",""Pectoral Lymph Node"",""Patella"",""Parotid Gland Lymph Node"",""Parotid Gland"",""Parotid Duct"",""Parietal Pleura"",""Parietal Lobe"",""Parietal Bone"",""Paratracheal Lymph Node"",""Parathyroid Gland"",""Parasympathetic Nervous System"",""Paranasal Sinus"",""Parametrium"",""Paraganglion"",""Paraaortic Lymph Node"",""Pancreatic Lymph Node"",""Pancreatic Duct"",""Pancreas"",""Palmar Fascia"",""Palatine Tonsil"",""Palate"",""Ovary"",""Outer Canthus"",""Other Specified Parts of Pancreas"",""Oropharynx"",""Orbit"",""Oral Cavity"",""Optic Tract"",""Optic Nerve"",""Optic Chiasm"",""Omentum"",""Olfactory Nerve"",""Oculomotor Nerve"",""Oculomotor Muscle"",""Occipital Lymph Node"",""Occipital Lobe"",""Occipital Bone"",""Obturator Nerve"",""Obturator Lymph Node"",""Nostril"",""Nose"",""Nipple"",""Nervous System"",""Nerve"",""Neck Skin"",""Nasopharynx"",""Nasolacrimal Duct"",""Nasal Turbinate"",""Nasal Septum"",""Nasal Cavity"",""Nasal Cartilage"",""Nasal Bone"",""Myometrium"",""Myocardium"",""Musculus Latissimus Dorsi"",""Muscle"",""Mucosa of the Upper Lip"",""Mucosa of the Lower Lip"",""Mucosa of the Lip"",""Mons Pubis"",""Minor Salivary Gland"",""Middle Third of the Esophagus"",""Middle Lobe of the Right Lung"",""Middle Ear"",""Middle Cranial Fossa"",""Metatarsal Bone"",""Metacarpal Bone"",""Mesovarium"",""Mesonephros"",""Mesonephric Duct"",""Mesentery"",""Mesenteric Lymph Node"",""Mesenteric Artery"",""Mesencephalon"",""Mentum"",""Meniscus Medialis"",""Meniscus Lateralis"",""Meninges"",""Meibomian Gland"",""Medulla Oblongata"",""Mediastinum"",""Mediastinal Lymph Node"",""Median Nerve"",""Meckel Diverticulum"",""Maxillary Sinus"",""Maxilla"",""Masseter Muscle"",""Mandible"",""Mammary Gland"",""Male Prepuce"",""Male Genitalia"",""Main Bronchus"",""Lymphatic"",""Lymph Node of Inguinal Region or Leg"",""Lymph Node"",""Lung"",""Lumbosacral Plexus"",""Lumbar Nerve"",""Lower-Outer Quadrant of the Breast"",""Lower-Inner Quadrant of the Breast"",""Lower Third of the Esophagus"",""Lower Lobe of the Lung"",""Lower Gingiva"",""Lower Extremity"",""Lobule of the Auricle"",""Liver"",""Lip"",""Lingula of the Lung"",""Lingual Tonsil"",""Ligament"",""Lesser Curvature of the Stomach"",""Lens"",""Leg Skin"",""Lateral Wall of the Pharynx"",""Lateral Wall of the Oropharynx"",""Lateral Wall of the Nasopharynx"",""Lateral Wall of the Bladder"",""Lateral Ventricle"",""Larynx"",""Laryngeal Cartilage"",""Large Intestine"",""Lacrimal Sac"",""Lacrimal Gland"",""Labium Minus"",""Labium Majus"",""Labium"",""Knee Skin"",""Knee Joint"",""Kidney"",""Joint"",""Jejunum"",""Jaw Joint"",""Jaw Bone"",""Isthmus Uteri"",""Islet of Langerhans"",""Ischium"",""Ischiorectal Fossa"",""Iris"",""Intrathoracic Lymph Node"",""Intraocular Route of Administration"",""Intrahepatic Bile Duct"",""Intra-Abdominal Lymph Node"",""Intestine"",""Intervertebral Disc"",""Internal Nare"",""Internal Mammary Lymph Node"",""Internal Mammary Artery"",""Internal Iliac Lymph Node"",""Internal Capsule"",""Intercostal Nerve"",""Intercostal Muscle"",""Intercostal Lymph Node"",""Inner Ear"",""Inner Canthus"",""Inguinal Region"",""Inguinal Lymph Node"",""Infratentorial Brain"",""Infraclavicular Region"",""Infraclavicular Lymph Node"",""Inferior Vena Cava"",""Ilium"",""Iliopsoas Muscle"",""Iliac Vein"",""Iliac Lymph Node"",""Iliac Artery"",""Ileum"",""Ileocecal Valve"",""Hypothalamus"",""Hypopharynx"",""Hypoglossal Nerve"",""Hyoid Bone"",""Hymen"",""Humerus"",""Hippocampus"",""Hip Joint"",""Hip"",""Hepatic Lymph Node"",""Hepatic Flexure"",""Hepatic Duct"",""Hepatic"",""Hematopoietic System"",""Helix"",""Heart"",""Head Skin"",""Head of the Pancreas"",""Head and Neck Lymph Node"",""Hard Palate"",""Hand Skin"",""Hand Phalanx"",""Hand Digit 1"",""Hand"",""Greater Curvature of the Stomach"",""Gluteus Maximus"",""Glottis"",""Glossopharyngeal Nerve"",""Globus Pallidus"",""Glans Penis"",""Gland of Littre"",""Gingiva"",""Gastrointestinal Tract"",""Gastroesophageal Junction"",""Gastrocnemius Muscle"",""Gastric Lymph Node"",""Gastric Cardia"",""Gallbladder"",""Fundus Uteri"",""Fundus of the Stomach"",""Frontal Sinus"",""Frontal Pole"",""Frontal Lobe"",""Frontal Bone"",""Fourth Ventricle"",""Forehead"",""Forearm"",""Foot Skin"",""Foot Phalanx"",""Foot Bone"",""Foot"",""Floor of Mouth"",""Flank"",""Fingernail"",""Finger"",""Fibula"",""Fibrous Tissue"",""Femur"",""Femoral Nerve"",""Femoral Lymph Node"",""Femoral Artery"",""Female Genitalia"",""Fascia"",""Falx Cerebri"",""Falx Cerebelli"",""False Vocal Cord"",""Fallopian Tube"",""Facial Nerve"",""Facial Bone"",""Eyelid"",""Eyebrow"",""Eye"",""Extrahepatic Bile Duct"",""External Upper Lip"",""External Nose"",""External Lower Lip"",""External Lip"",""External Ear"",""External Acoustic Meatus"",""Eustachian Tube"",""Ethmoid Sinus"",""Ethmoid Bone"",""Esophagus"",""Epitrochlear Lymph Node"",""Epiglottis"",""Epidural Spinal Canal Space"",""Epididymis"",""Epicardium"",""Ependyma"",""Endometrium"",""Endometrial Stroma"",""Endocrine Gland"",""Endocervix"",""Endocardium"",""Elbow Skin"",""Elbow Joint"",""Ectocervix"",""Ear Skin"",""Ear"",""Dura Mater"",""Duodenum"",""Ductus Santorini"",""Duct of Gartner"",""Dome of the Bladder"",""Diaphragmatic Lymph Node"",""Diaphragm"",""Descending Colon"",""Cystic Duct"",""Cuneiform Cartilage"",""Cul-de-sac"",""Cricoid Cartilage"",""Craniopharyngeal Duct"",""Cranial Nerve"",""Cowper Gland"",""Costovertebral Joint"",""Costal Cartilage"",""Corpus Uteri"",""Corpus Striatum"",""Corpus Callosum"",""Corneoscleral Limbus"",""Cornea"",""Coracobrachialis"",""Conus Medullaris"",""Connective Tissue"",""Conjunctiva"",""Concha"",""Common Bile Duct"",""Commissure of the Lip"",""Colon"",""Cochlear Nerve"",""Coccyx"",""Clitoris"",""Ciliary Body"",""Choroid Plexus of the Third Ventricle"",""Choroid Plexus of the Lateral Ventricle"",""Choroid Plexus of the Fourth Ventricle"",""Choroid Plexus"",""Choroid"",""Chest Wall"",""Chest"",""Cheek"",""Cervix Uteri"",""Cervical Lymph Node"",""Cervical Gland"",""Cervical Esophagus"",""Ceruminous Gland"",""Cerebral White Matter"",""Cerebral Peduncle"",""Cerebral Meninges"",""Cerebral Hemisphere"",""Cerebral Cortex"",""Cerebellum"",""Cerebellopontine Angle"",""Central Portion of the Breast"",""Central Nervous System"",""Celiac Lymph Node"",""Celiac Artery"",""Cecum"",""Cauda Equina"",""Cartilage"",""Carpal Region"",""Carpal Bone"",""Carotid Body"",""Carotid Artery"",""Carina"",""Cardiac Ventricle"",""Cardiac Atrium"",""Calf"",""Calcaneum"",""C2 Vertebra"",""C1 Vertebra"",""Buttock"",""Buccal Mucosa"",""Bronchus"",""Bronchiole"",""Bronchial Lymph Node"",""Broad Ligament"",""Breast"",""Branchial Cleft Remnant"",""Brain Ventricle"",""Brain Stem"",""Brain Dura Mater"",""Brain"",""Brachialis"",""Brachial Plexus"",""Brachial Lymph Node"",""Bone of the Extremity"",""Bone Marrow"",""Bone"",""Body of the Penis"",""Body of the Pancreas"",""Body of Stomach"",""Blood Vessel"",""Blood"",""Bladder Trigone"",""Bladder Neck"",""Bladder"",""Biliary Tract"",""Bile Duct"",""Bile Canaliculus"",""Abdominal Aorta"",""Abdominal Esophagus"",""Abdominal Muscle"",""Abdominal Skin"",""Abdominal Wall"",""Abducens Nerve"",""Accessory Nerve"",""Acetabulum"",""Acromioclavicular Joint"",""Adipose Tissue"",""Adrenal Cortex"",""Adrenal Gland"",""Adrenal Medulla"",""Ampulla of Vater"",""Anal Canal"",""Anal Transitional Zone"",""Ankle Joint"",""Ankle Skin"",""Antecubital Region"",""Anterior Cranial Fossa"",""Anterior Mediastinum"",""Anterior Surface of the Epiglottis"",""Anterior Wall of the Bladder"",""Anterior Wall of the Nasopharynx"",""Antrum Pylori"",""Anus"",""Aorta"",""Aortocaval Lymph Node"",""Apex of the Tongue"",""Aponeurosis"",""Appendage of the Uterus"",""Appendix"",""Areola"",""Arm Skin"",""Artery"",""Articular Cartilage"",""Aryepiglottic Fold"",""Arytenoid Cartilage"",""Ascending Colon"",""Autonomic Nervous System"",""Axilla"",""Axillary Artery"",""Axillary Lymph Node"",""Axillary Tail of the Breast"",""Back"",""Bartholin Gland"",""Basal Ganglia"",""Base of the Tongue"",""Biceps""]",optional,"The organ or part of the body resected or biopsied, as described by the topography codes of the International Classification of Diseases for Oncology, 3rd Edition (ICD-O-3).",,FALSE +diagnosis,days_to_last_known_disease_status,Individual Days to Last Known Disease Status,,FALSE,number,Subject Initial Cancer Diagnosis To Last Known Disease Status Day Count,2,12447170,caDSR,,optional,The number of days from the date of the initial cancer diagnosis to the date of last known disease status.,,FALSE +diagnosis,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +treatment,treatment_id,None,,FALSE,string,,,,,,optional,"The property treatment_id is a compound property, combining the parent property participant.study_participant_id, string character """"_"""" in the middle as the connector, and the property therapeutic_agents.",,TRUE +treatment,treatment_type,"Individual Treatment Type, Model Treatment Type",,FALSE,string,Therapeutic Procedure Performed Type,1,14737565,caDSR,"[""Hormone Therapy"",""Palliative Care"",""Organ Transplantation"",""Electron Beam Radiation Therapy"",""Stem Cell Transplant"",""Cellular Therapy"",""Brachytherapy"",""Photon Beam Radiation Therapy"",""Radiopharmaceutical"",""Radiation Therapy"",""Conventional Radiotherapy"",""Not Reported"",""Autologous Stem Cell Transplantation"",""Allogeneic Hematopoietic Stem Cell Transplantation"",""Pharmacotherapy"",""Concurrent Chemoradiation"",""Radiofrequency Ablation"",""Unknown"",""3-Dimensional Conformal Radiation Therapy"",""High-Dose Rate Brachytherapy"",""Low-Dose Rate Brachytherapy"",""Intensity-Modulated Radiation Therapy"",""Proton Beam Radiation Therapy"",""Stereotactic Body Radiation Therapy"",""Surgical Procedure"",""Stereotactic Radiosurgery"",""External Beam Radiation Therapy"",""Chemotherapy"",""Immunotherapy"",""Targeted Molecular Therapy""]",optional,Text term that describes the kind of treatment administered,,FALSE +treatment,days_to_treatment,"Individual Days to Treatment, Model Days to Treatment",,FALSE,integer,Subject Age at Treatment Assignment Day Count,1,12305542,caDSR,,optional,"Days to start of treatment, relative to index date",,FALSE +treatment,therapeutic_agents,"Individual Therapeutic Agent, Model Therapeutic Agent",,FALSE,string,Therapeutic Procedure Pharmacologic Substance or Chemical NCI Thesaurus Name,1,14913015,caDSR,,optional,Text identification of the individual agent(s) used as part of a treatment regimen.,,FALSE +treatment,response,"Individual Treatment Response, Model Treatment Response",Any treatment response value applies (could be present in Model or Biospecimen),FALSE,string,Disease Response Assessment Outcome,1,13383448,caDSR,"[""Complete Response"",""No Response"",""Persistent Disease"",""Unknown"",""Not Evaluable"",""Not Applicable"",""Not Reported"",""No Evidence of Disease"",""Progressive Disease"",""Stable Disease"",""Partial Response""]",optional,Text term that describes the patient's final outcome after the treatment was administered.,,FALSE +treatment,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +sample,sample_id,Biospecimen Key,,TRUE,string,Biospecimen Source Laboratory Identifier,1,6921892,caDSR,,required,Sample identifier as submitted by requestor,,TRUE +sample,sample_type,Biospecimen Type Category,,TRUE,string,Specimen Material OBIB Source,1,11253427,caDSR,"[""Urine"",""Tissue"",""Stool"",""Sputum"",""Mouth Rinse"",""Fluids"",""Cells"",""Bone Marrow"",""Blood"",""Ascites"",""Analyte""]",required,Tissue type of this sample,,FALSE +sample,sample_description,Biospecimen Description,,FALSE,string,Sample Description Text,3,2003907,caDSR,,optional,Text description of a sample or specimen.,,FALSE +sample,sample_type_category,Biospecimen Type,,FALSE,string,Specimen Material Category,1,12445832,caDSR,"[""Cell Line"",""Central Nervous System"",""DNA"",""RNA"",""Saliva"",""Skin"",""Xenograft"",""Unknown"",""Not Reported"",""Mouth Rinse"",""Tissue"",""Urine"",""Sputum"",""Body Fluid or Substance"",""Stool"",""Cells"",""Bone Marrow"",""Ascites"",""Blood"",""Analyte""]",optional,The kind of material that forms the sample.,,FALSE +sample,sample_tumor_status,Biospecimen Tumor Status,,TRUE,string,Specimen Neoplasm Category,1,14688604,caDSR,"[""Unknown"",""Normal"",""Tumor"",""Not Reported"",""Peritumoral""]",required,Tumor or normal status,,FALSE +sample,sample_anatomic_site,Biospecimen Anatomic Site,,FALSE,string,Specimen Original Anatomic Site Uberon Identifier,1,12083894,caDSR,"[""Distal femur"",""Not Reported"",""Unknown"",""Wrist"",""White Blood Cells"",""Vulva"",""Vertebra"",""Venous"",""Vein"",""Vas Deferens"",""Vagina"",""Uvula"",""Uterus"",""Urinary Tract"",""Urethra"",""Ureter"",""Umbilical Cord"",""Trunk"",""Trachea / Major Bronchi"",""Tonsil (Pharyngeal)"",""Tonsil"",""Tongue"",""Thyroid"",""Thymus"",""Thumb"",""Throat"",""Thorax"",""Thoracic Spine"",""Thigh"",""Testis"",""Tendon"",""Temporal Cortex"",""Synovium"",""Supraglottis"",""Submandibular Gland"",""Sublingual Gland"",""Subglottis"",""Subcutaneous Tissue"",""Stomach - Mucosa Only"",""Stomach"",""Sternum"",""Splenic Flexure"",""Spleen"",""Spinal Cord"",""Spinal Column"",""Soft Tissue"",""Small Finger"",""Small Bowel - Mucosa Only"",""Small Bowel"",""Skull"",""Skin"",""Skeletal Muscle"",""Sinus(es), Maxillary"",""Sinus"",""Sigmoid Colon"",""Seminal Vesicle"",""Scrotum"",""Sciatic Nerve"",""Scapula"",""Scalp"",""Salivary Gland"",""Sacrum"",""Round Ligament"",""Ring Finger"",""Rib"",""Retroperitoneum"",""Retro-Orbital Region"",""Retina"",""Rectum"",""Rectosigmoid Junction"",""Pylorus"",""Prostate"",""Popliteal Fossa"",""Pleura"",""Placenta"",""Pituitary Gland"",""Pineal Gland"",""Pineal"",""Pharynx"",""Peritoneum"",""Peritoneal Cavity"",""Periorbital Soft Tissue"",""Pericardium"",""Penis"",""Pelvis"",""Patella"",""Parotid Gland"",""Parathyroid"",""Paraspinal Ganglion"",""Paranasal Sinuses"",""Pancreas"",""Palate"",""Ovary"",""Other"",""Oropharynx"",""Oral Cavity - Mucosa Only"",""Oral Cavity"",""Omentum"",""Ocular Orbits"",""Occipital Cortex"",""Not Allowed To Collect"",""Nerve(s) Cranial"",""Nerve"",""Neck"",""Nasopharynx"",""Nasal Soft Tissue"",""Nasal Cavity"",""Nails"",""Muscle"",""Mitochondria"",""Middle Finger"",""Mesothelium"",""Mesentery"",""Mediastinum"",""Mediastinal Soft Tissue"",""Maxilla"",""Mandible"",""Lymph Nodes(s) Mediastinal"",""Lymph Node(s) Supraclavicular"",""Lymph Node(s) Submandibular"",""Lymph Node(s) Subclavicular"",""Lymph Node(s) Splenic"",""Lymph Node(s) Scalene"",""Lymph Node(s) Retroperitoneal"",""Lymph Node(s) Regional"",""Lymph Node(s) Popliteal"",""Lymph Node(s) Pelvic"",""Lymph Node(s) Parotid"",""Lymph Node(s) Paraaortic"",""Lymph Node(s) Occipital"",""Lymph Node(s) Mesenteric"",""Lymph Node(s) Mammary"",""Lymph Node(s) Internal Mammary"",""Lymph Node(s) Inguinal"",""Lymph Node(s) Iliac-External"",""Lymph Node(s) Iliac-Common"",""Lymph Node(s) Hilar"",""Lymph Node(s) Femoral"",""Lymph Node(s) Epitrochlear"",""Lymph Node(s) Distant"",""Lymph Node(s) Cervical"",""Lymph Node(s) Axilla"",""Lymph Node"",""Lumbar Spine"",""Lip"",""Ligament"",""Leptomeninges"",""Leg"",""Larynx"",""Laryngopharynx"",""Large Bowel"",""Lacrimal Gland"",""Knee"",""Joint"",""Jejunum"",""Jaw"",""Islet Cells"",""Ischium"",""Index Finger"",""Ilium"",""Ileum"",""Hypopharynx"",""Hippocampus"",""Hip"",""Hepatic Vein"",""Hepatic Flexure"",""Hepatic Duct"",""Hepatic"",""Heart"",""Head & Neck"",""Head - Face Or Neck, Nos"",""Hard Palate"",""Hand"",""Gum"",""Groin"",""Glottis"",""Gastrointestinal Tract"",""Gastroesophageal Junction"",""Ganglia"",""Gallbladder"",""Fundus Of Stomach"",""Frontal Cortex"",""Foreskin"",""Forehead"",""Forearm"",""Foot"",""Fluid"",""Floor Of Mouth"",""Finger"",""Fibula"",""Fibroblasts"",""Femoral Vein"",""Femoral Artery"",""Fallopian Tube"",""Eye"",""Esophagus - Mucosa Only"",""Esophagus"",""Esophagogastric Junction"",""Esophageal; Proximal"",""Esophageal; Mid"",""Esophageal; Distal"",""Epidural Space"",""Epididymis"",""Endocrine Gland"",""Elbow"",""Effusion"",""Ear, Pinna (External)"",""Ear Canal"",""Ear"",""Duodenum"",""Diaphragm"",""Descending Colon"",""Dermal"",""Connective Tissue"",""Conjunctiva"",""Common Duct"",""Colon - Mucosa Only"",""Colon"",""Clitoris"",""Clavicle"",""Chin"",""Chest Wall"",""Chest"",""Cervix"",""Cervical Spine"",""Cerebrospinal Fluid"",""Cerebral Cortex"",""Central Nervous System"",""Cell-Line"",""Cecum"",""Cartilage"",""Carotid Body"",""Carotid Artery"",""Carina"",""Cardia"",""Capillary"",""Calf"",""Buttock"",""Buccal Mucosa"",""Buccal Cavity"",""Brow"",""Bronchus"",""Bronchiole"",""Broad Ligament"",""Breast"",""Brain Stem"",""Brain"",""Bowel"",""Bone Marrow"",""Bone"",""Blood Vessel"",""Blood"",""Bladder"",""Bile Duct"",""Back"",""Axilla"",""Autonomic Nervous System"",""Auditory Canal"",""Ascending Colon Hepatic Flexure"",""Ascending Colon"",""Artery"",""Aqueous Fluid"",""Appendix"",""Aortic Body"",""Aorta"",""Anus"",""Antrum"",""Antecubital Fossa"",""Anorectum"",""Ankle"",""Anal Sphincter"",""Ampulla Of Vater"",""Amniotic Fluid"",""Alveolar Ridge"",""Adrenal"",""Adipose"",""Adenoid"",""Acetabulum"",""Abdominal Wall"",""Abdomen"",""not reported"",""Pleural effusion met"",""R. Neck mass"",""Cervical node"",""Paratesticular"",""Bone Marrow metastasis"",""Perineum"",""Arm"",""L. Proximal Tibia"",""Os frontalis"",""L. Distal Femur"",""Bone marrow"",""post mortem blood"",""post mortem liver"",""Frontal Lobe"",""Peripheral blood"",""Lung"",""tumor"",""post mortem liver tumor"",""Left Bone marrow"",""Right Bone marrow"",""Left thigh"",""Lung/pleura"",""R. femur/rib/verebra"",""Femur"",""Paraspinal mass"",""Abdominal mass"",""Kidney"",""Brain stem"",""Cerebrum"",""Cerebellum"",""R. Buttock"",""Shoulder"",""L. Kidney"",""R. Kidney"",""Ventricular mass"",""Bilateral"",""Retroperitoneal mass"",""Adrenal mass"",""R. Breast metastasis"",""Paracaval Lymph Node metastasis"",""Transverse Colon"",""Lymph Node met"",""Orbit"",""Lung met"",""Liver"",""4th ventricle"",""L. Occipital mass"",""Posterior mediastil mass (mediastinum)"",""R. Proximal Ulna"",""R. Sylvian Fissure"",""Lung metastasis"",""Liver metastasis"",""R. Parietal Lobe"",""Tibia"",""Humerus"",""Lung mass"",""R. Distal Femur"",""R. Humerus"",""L. Femur""]",optional,Anatomic site from which sample was collected,,FALSE +sample,sample_age_at_collection,Biospecimen Age at Collection,,FALSE,integer,Subject Age At Specimen Collection Day Count,2,14473376,caDSR,,optional,"Number of days to collection, relative to index date",,FALSE +sample,derived_from_specimen,Parent Biospecimen Key,,FALSE,string,Parent Specimen Label Identifier,1,5581201,caDSR,,optional,Identier of the parent specimen of this sample,,FALSE +sample,biosample_accession,Biospecimen BioSample Identifier,,FALSE,"{""pattern"":""^SAMN[0-9]+$""}",Specimen Accession Number,6,2230047,caDSR,,preferred,NCBI BioSample accession ID (SAMN) for this sample,,FALSE +sample,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +file,file_id,id,,TRUE,string,,,,,,required,A file identifier generated by CRDC Submission Portal. This property is not included in the downloaded submission template,,TRUE +file,file_name,name,,TRUE,string,Electronic Data File Name,2,11284037,caDSR,,required,Name of file,,FALSE +file,file_type,File Format,,TRUE,string,Electronic Data File Format Type,1,11416926,caDSR,"[""XLSX"",""DOC"",""idpDB"",""rds"",""CNS"",""DICT"",""cdf"",""PED"",""SEG"",""RTF"",""TBI"",""HTSeq Count"",""gVCF"",""HIC"",""BEDPE Format"",""mtx"",""mzIdentML"",""MEX"",""CRAI"",""CEL"",""MAF"",""JSON"",""JPEG 2000"",""JPEG"",""IDF"",""IDAT"",""ZIP"",""YAML"",""TIFF"",""XML"",""ADF"",""AVI"",""BAI"",""BAM"",""BED"",""bedgraph"",""bigBed"",""bigWig"",""Binary Format"",""BCR Biotab"",""BIOM"",""CRAM"",""CSV"",""DOCX"",""DSV"",""FASTA"",""FASTQ"",""GCT/Res Format"",""DICOM"",""GenBank Format"",""GFF3"",""GPR"",""GTF"",""HDF5"",""HTML"",""GZIP Format"",""MAGE-TAB"",""MAT"",""MPEG-4"",""mzML"",""mzXML"",""NIFTI Format"",""MATLAB Script"",""OME-TIFF"",""PDF"",""Plain Text Data Format"",""PNG"",""R File Format"",""R Markdown"",""SDRF"",""Sequence Record Format"",""SVG"",""Python Script Format"",""SVS"",""TAR"",""Thermo RAW"",""TSV"",""TXT"",""VCF"",""XLS""]",required,File type from enumerated list,,FALSE +file,file_description,File Description,,FALSE,string,Electronic Data File Description Text,1,11280338,caDSR,,optional,Human-readable description of file,,FALSE +file,file_size,dataFileSizeBytes,,FALSE,integer,Electronic Data File Size Integer,1,11479876,caDSR,,optional,File size in bytes,,FALSE +file,md5sum,dataFileMD5Hex,,TRUE,"{""pattern"":""^[0-9a-fA-F]{32}$""}",Electronic Data File MD5 Checksum Text,2,11556150,caDSR,,required,MD5 hex digest for this file,,FALSE +file,file_url_in_cds,None,,FALSE,string,Electronic File Pathname Text,2,11556141,caDSR,,optional,"Location of the file on the GC cloud, using AWS S3 protocol",,FALSE +file,experimental_strategy_and_data_subtypes,Derived,Map from File Assay to GC terminology,TRUE,list,Research Activity Experimental Method Type,2,12373576,caDSR,"[""LC-MS/MS"",""Methylation Analysis"",""DNA-Seq"",""Archer Fusion"",""Methylation Array"",""Radiological"",""Pathological"",""RNA-Seq""]",required,What is the experimental strategy used for the study (or whattype of data subtypes exist in the study)?,,FALSE +file,submission_version,None,,FALSE,string,,,,,,preferred,The version of the metadata file submitted to GC,,FALSE +file,checksum_value,None,,FALSE,string,,,,,,optional,checksum (hash) for file (using checksum_algorithm) - if you want to use a checksum other than md5,,FALSE +file,checksum_algorithm,None,,FALSE,string,,,,,,optional,The method by which the file checksum was calculated.,,FALSE +file,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +file,file_mapping_level,Constant,sample,FALSE,string,Electronic File Relationship Type,1,11595478,caDSR,"[""Study"",""Participant"",""Sample""]",optional,"Describes if the file belongs to a Participant, a Sample, or a Study",,FALSE +file,release_datetime,None,,FALSE,string,,,,,,optional,An ISO8601 formatted datetime that records the released datetime of the file,,FALSE +file,is_supplementary_file,None,,FALSE,boolean,,,,,,optional,"Whether or not the file is the supplementary file, the value can only be """"true"""" or """"false"""" in string type.",,FALSE +genomic_info,genomic_info_id,id,,TRUE,string,,,,,,required,"Genomic info identifier, the ID property for the node genomic_info.",,TRUE +genomic_info,library_id,File Longitudinal Group,,FALSE,string,Sequencing Library Unique Identifier Text,1,11555660,caDSR,,optional,Library identifier as submitted by requestor,,FALSE +genomic_info,bases,NGS Unique Bases,,FALSE,integer,Sequencing Library Unique Basecalling Count,1,12373573,caDSR,,preferred,Total number of unique bases read,,FALSE +genomic_info,number_of_reads,NGS Raw Reads,,FALSE,integer,Sequencing Library Sequence Read Count,1,11529035,caDSR,,preferred,Total number of reads performed,,FALSE +genomic_info,avg_read_length,NGS Read Length,,FALSE,number,Nucleotide Sequence Average Read Length Count,1,12426615,caDSR,,preferred,Average sequence read length,,FALSE +genomic_info,coverage,NGS Sequencing Coverage,,FALSE,string,Genome Assembly Sequence Depth of Coverage Number,1,11556322,caDSR,"[""1"",""2"",""3"",""4"",""5"",""6"",""7"",""8"",""9"",""10"",""0""]",preferred,Average depth of coverage on reference used,,FALSE +genomic_info,reference_genome_assembly,Genomic Reference,,FALSE,string,Genome Assembly NCBI Genetic Reference Sequence Identifier,2,11529031,caDSR,"[""GRCh37"",""GRCh37-lite"",""GRCh38"",""Not specified in data""]",preferred,Accession or name of genome reference or assembly used for alignment,,FALSE +genomic_info,custom_assembly_fasta_file_for_alignment,None,"Could add if needed later, but not anticipated",FALSE,string,Genome Assembly Custom FASTA File Name,1,11636299,caDSR,,preferred,File name of any custom assembly fasta file used during alignment,,FALSE +genomic_info,design_description,NGS Sequencing Design Description,,FALSE,string,Sequencing Library Design Description Text,1,11529028,caDSR,,preferred,Human-readable description of methods used to create sequencing library,,FALSE +genomic_info,library_strategy,NGS Library Strategy,,FALSE,string,Sequencing Library Technique Type,2,6273393,caDSR,"[""scRNA-Seq"",""Spatial-tx"",""scMultiome"",""snATAC-Seq"",""CTS"",""DNase-Hypersensitivity"",""EST"",""FAIRE-seq"",""FINISHING"",""FL-cDNA"",""Hi-C"",""MBD-Seq"",""MeDIP-Seq"",""miRNA-Seq"",""MNase-Seq"",""MRE-Seq"",""ncRNA-Seq"",""POOLCLONE"",""RAD-Seq"",""RIP-Seq"",""SELEX"",""ssRNA-seq"",""Synthetic-Long-Read"",""Targeted-Capture"",""Tethered Chromatin Conformation Capture"",""Tn-Seq"",""WCS"",""WGA"",""AMPLICON"",""ATAC-Seq"",""Bisulfite-Seq"",""ChIA-PET"",""ChIP-Seq"",""CLONEEND"",""CLONE"",""WGS"",""WXS"",""Other""]",preferred,Nucleic acid capture or processing strategy for this library,,FALSE +genomic_info,library_layout,NGS Library Layout,,FALSE,string,Sequencing Library Read Layout Type,1,11527735,caDSR,"[""Single-indexed"",""Paired-End""]",preferred,Library layout as submitted by requestor,,FALSE +genomic_info,library_selection,NGS Library Selection Method,,FALSE,string,Sequencing Library Creation Method Type,2,6347743,caDSR,"[""Poly-A Enriched Genomic Library"",""MNase"",""Not applicable"",""Affinity Enrichment"",""rRNA Depletion"",""miRNA Size Fractionation"",""Other"",""cDNA"",""CF-H"",""CF-T"",""MDA"",""MSLL"",""Unspecified"",""Repeat fractionation"",""DNAse"",""Hybrid Selection"",""Reduced Representation"",""Restriction Digest"",""5-methylcytidine antibody"",""MBD2 protein methyl-CpG binding domain"",""CAGE"",""RACE"",""Size fractionation"",""Padlock probes capture method"",""cDNA oligo_dT"",""cDNA random priming"",""Inverse rRNA"",""Random"",""PCR"",""Random PCR"",""RT-PCR"",""HMPR"",""MF"",""CF-S"",""CF-M"",""ChIP""]",preferred,Library selection method,,FALSE +genomic_info,platform,Derived,Extract platform from NGS Sequencing Platform,FALSE,string,Sequencing Library Platform Name,1,6347771,caDSR,"[""Ultima"",""PacBio SMRT"",""Oxford Nanopore"",""LS 454"",""Ion Torrent"",""Illumina"",""Helicos"",""Complete Genomics"",""BGISEQ"",""ABI Solid"",""Capillary""]",preferred,Instrument platform or manufacturer,,FALSE +genomic_info,instrument_model,NGS Sequencing Platform,,FALSE,string,Sequencing Library Platform Model Name,1,6352164,caDSR,"[""AB SOLiD System"",""Illumina NovaSeq X Plus"",""Illumina NextSeq 2500"",""Ultima Genomics UG100"",""Illumina NovaSeq 6000"",""AB 5500 Genetic Analyzer"",""AB SOLiD PI System"",""AB 5500x-Wl Genetic Analyzer"",""AB 5500xl Genetic Analyzer"",""AB SOLiD 4hq System"",""AB SOLiD 3 Plus System"",""DNBSEQ-G50"",""PacBio Sequel II"",""PacBio Sequel"",""MGISEQ-2000RS"",""DNBSEQ-T7"",""DNBSEQ-G400"",""454 GS Junior"",""454 GS FLX Titanium"",""454 GS FLX+"",""454 GS FLX"",""454 GS 20"",""454 GS"",""Illumina NextSeq 550"",""Illumina NextSeq 500"",""Illumina MiSeq"",""Illumina MiniSeq"",""Illumina HiSeq 4000"",""Illumina HiSeq 3000"",""Illumina HiSeq 2500"",""Illumina HiSeq 2000"",""Illumina HiSeq 1500"",""Illumina HiSeq 1000"",""Illumina HiScanSQ"",""Illumina Genome Analyzer IIx"",""Illumina Genome Analyzer"",""Ion Torrent Proton"",""Ion Torrent PGM"",""PacBio RS II"",""PacBio RS"",""Complete Genomics"",""BGISEQ-500"",""PromethION"",""MinION"",""GridION"",""AB 3730xL Genetic Analyzer"",""AB 3730 Genetic Analyzer"",""AB 3500xL Genetic Analyzer"",""AB 3500 Genetic Analyzer"",""AB 3130xL Genetic Analyzer"",""AB 3130 Genetic Analyzer"",""AB 310 Genetic Analyzer"",""Ion Torrent S5"",""Ion Torrent S5 XL"",""Helicos HeliScope"",""Illumina Genome Analyzer II"",""AB SOLiD 4"",""Unknown"",""Other"",""AB SOLiD 2"",""AB SOLiD 3"",""Not Reported"",""Illumina NovaSeq"",""Illumina NextSeq"",""Illumina HiSeq X Five"",""Illumina HiSeq X Ten"",""Illumina iSeq 100""]",preferred,Instrument model,,FALSE +genomic_info,sequence_alignment_software,Software and Version,,FALSE,string,Nucleotide Sequence Alignment Software Name Text,2,11529072,caDSR,,preferred,Name of software program used to align nucleotide sequence data,,FALSE +genomic_info,reporter_label,None,,FALSE,string,,,,,,optional,The text term used to describe the labeled methyl group used as a molecular tag.,,FALSE +genomic_info,methylation_platform,None,,FALSE,string,,,,,,optional,The equipment used to detect the presence and/or location of methyl groups during DNA or protein analysis.,,FALSE +genomic_info,library_source_material,NGS Library Source Material,,FALSE,string,Molecular Specimen Material Source,1,15235975,caDSR,"[""Bulk Cells"",""Bulk Tissue"",""Bulk Nuclei"",""Single-nuclei"",""Single-cells"",""Not Reported""]",preferred,Source Material,,FALSE +genomic_info,library_source_molecule,NGS Library Source Molecule,,FALSE,string,Molecular Specimen Molecule Source,1,15235981,caDSR,"[""Transcriptome"",""Not Reported"",""Metatranscriptomic"",""Metagenomic"",""Genomic DNA"",""Viral RNA""]",preferred,Source Molecule,,FALSE +genomic_info,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +image,study_link_id,id,,TRUE,string,,,,,,required,The study_link_id is ID property for the node image. It should consist of a string and a number.,,TRUE +image,de_identification_method_type,Study De-identification Method Type,,TRUE,string,Deidentification Method Type,1,14607284,caDSR,"[""Not Applicable"",""Automatic"",""Semiautomatic"",""Manual""]",required,General description of the de-identification method,,FALSE +image,de_identification_method_description,Study De-identification Method Description,,FALSE,string,Deidentification Method Description Text,1,14612655,caDSR,,optional,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,FALSE +image,de_identification_software,Study De-identification Method Software,,FALSE,string,Deidentification Software Name Text,1,14612658,caDSR,,optional,Software that was used to de-identify the images (if used),,FALSE +image,license,Study License,,TRUE,string,Data Collection License Type,1,14902606,caDSR,"[""CC BY 4.0"",""CC BY-NC 4.0"",""CC BY-NC 3.0"",""CC BY 3.0""]",required,Official or legal permission to do or own a specified thing.,,FALSE +image,citation_or_DOI,PublicationView Key,,TRUE,string,Raw Data Protocol Or Digital Object Identifier Text,1,7787673,caDSR,,required,Publication and/or digital object identifier of the publication for open access studies,,FALSE +image,species,Biospecimen Species,,TRUE,string,NCBI Taxonomy ID,2,10543100,caDSR,,required,"Use the NCBI Taxonomy ID to identify species. A label provided by NCBI Taxonomy Database (https://www.ncbi.nlm.nih.gov/taxonomy/), which uniquely identifies group or category, at any level, in a system for classifying plants or animals (including humans) providing ranked categories for the classification of organisms according to their suspected evolutionary relationships.",,FALSE +image,image_modality,None,,Missing but required,string,Imaging Technology DICOM Modality Type,1,12137353,caDSR,"[""MG"",""NM"",""ECG"",""VA"",""TEXTUREMAP"",""STAIN"",""SRF"",""SEG"",""RWV"",""RESP"",""REG"",""POS"",""PLAN"",""OSS"",""OPV"",""OPTENF"",""OPTBSV"",""OPT"",""OPM"",""OCT"",""OAM"",""M3D"",""LEN"",""KER"",""IVOCT"",""IOL"",""FID"",""EOG"",""EMG"",""EEG"",""DOC"",""DMS"",""CTPROTOCOL"",""BMD"",""BDUS"",""ASMT"",""AR"",""MS"",""MR"",""OP"",""OT"",""PR"",""PT"",""PX"",""RF"",""RG"",""RTDOSE"",""RTIMAGE"",""RTPLAN"",""RTRECORD"",""RTSTRUCT"",""SM"",""SMR"",""SR"",""ST"",""TG"",""BI"",""AS"",""AU"",""CD"",""CF"",""CP"",""CR"",""US"",""VF"",""XA"",""XC"",""CS"",""CT"",""DD"",""DF"",""DG"",""DM"",""DS"",""DX"",""EC"",""EPS"",""ES"",""FA"",""FS"",""GM"",""HC"",""HD"",""IO"",""IVUS"",""KO"",""LP"",""LS"",""MA""]",required,The method in which the images are generated.,,FALSE +image,imaging_equipment_manufacturer,Image Platform Manufacturer,,TRUE,string,Equipment Manufacturer Model Name Text,1,2866141,caDSR,,required,Producer of the imaging equipment that was used to generate the digital image,,FALSE +image,imaging_equipment_model,Image Platform Model,,FALSE,string,Equipment Manufacturer Model Name Text,2.1,2413274,caDSR,,optional,The words used to describe the specific model of the instrument used to carry out an imaging experiment.,,FALSE +image,imaging_software,Image Software,,FALSE,string,Equipment Software Version Text,1.2,2413278,caDSR,,optional,"The name of the software package that was used to capture, generate, and process the image.",,FALSE +image,imaging_protocol,Image Protocol Link,,FALSE,string,Raw Data Protocol Or Digital Object Identifier Text,1,7787673,caDSR,,optional,"A rule which guides how an activity should be performed. Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the image was obtained or generated.",,FALSE +image,organ_or_tissue,File Anatomic Site,,TRUE,string,ICD-O Origin of Disease Anatomic Site,1,6161035,caDSR,"[""Craniopharyngeal duct"",""Pleura, NOS"",""Postcricoid region"",""Posterior mediastinum"",""Posterior wall of bladder"",""Posterior wall of hypopharynx"",""Overlapping lesion of bones, joints and articular cartilage"",""Overlapping lesion of bones, joints and articular cartilage of limbs"",""Overlapping lesion of brain and central nervous system"",""Overlapping lesion of eye and adnexa"",""Overlapping lesion of heart, mediastinum and pleura"",""Overlapping lesion of peripheral nerves and autonomic nervous system"",""Overlapping lesion of rectum, anus and anal canal"",""Overlapping lesion of accessory sinuses"",""Overlapping lesion of biliary tract"",""Overlapping lesion of bladder"",""Overlapping lesion of brain"",""Overlapping lesion of breast"",""Overlapping lesion of cervix uteri"",""Overlapping lesion of colon"",""Overlapping lesion of connective, subcutaneous and other soft tissues"",""Overlapping lesion of corpus uteri"",""Posterior wall of nasopharynx"",""Posterior wall of oropharynx"",""Prepuce"",""Prostate gland"",""Pylorus"",""Pyriform sinus"",""Rectosigmoid junction"",""Rectum, NOS"",""Renal pelvis"",""Reticuloendothelial system, NOS"",""Retina"",""Peripheral nerves and autonomic nervous system of abdomen"",""Peripheral nerves and autonomic nervous system of head, face, and neck"",""Peripheral nerves and autonomic nervous system of lower limb and hip"",""Peripheral nerves and autonomic nervous system of pelvis"",""Peripheral nerves and autonomic nervous system of thorax"",""Peripheral nerves and autonomic nervous system of trunk, NOS"",""Peripheral nerves and autonomic nervous system of upper limb and shoulder"",""Rib, sternum, clavicle and associated joints"",""Short bones of upper limb and associated joints"",""Upper third of esophagus"",""Upper-inner quadrant of breast"",""Upper-outer quadrant of breast"",""Urachus"",""Ureter"",""Ureteric orifice"",""Urethra"",""Urinary system, NOS"",""Uterine adnexa"",""Uterus, NOS"",""Uvula"",""Vagina, NOS"",""Vallecula"",""Vertebral column"",""Vestibule of mouth"",""Vulva, NOS"",""Waldeyer ring"",""Unknown"",""Not Reported"",""Short bones of lower limb and associated joints"",""Spermatic cord"",""Sphenoid sinus"",""Spinal cord"",""Spinal meninges"",""Spleen"",""Splenic flexure of colon"",""Stomach, NOS"",""Subglottis"",""Sublingual gland"",""Retromolar area"",""Retroperitoneum"",""Round ligament"",""Scrotum, NOS"",""Sigmoid colon"",""Skin of lip, NOS"",""Skin of lower limb and hip"",""Skin of other and unspecified parts of face"",""Skin of scalp and neck"",""Skin of trunk"",""Skin of upper limb and shoulder"",""Skin, NOS"",""Small intestine, NOS"",""Soft palate, NOS"",""Overlapping lesion of digestive system"",""Overlapping lesion of endocrine glands and related structures"",""Overlapping lesion of esophagus"",""Overlapping lesion of female genital organs"",""Overlapping lesion of floor of mouth"",""Overlapping lesion of hypopharynx"",""Overlapping lesion of ill-defined sites"",""Overlapping lesion of larynx"",""Overlapping lesion of lip"",""Overlapping lesion of lip, oral cavity and pharynx"",""Overlapping lesion of lung"",""Overlapping lesion of major salivary glands"",""Overlapping lesion of male genital organs"",""Overlapping lesion of nasopharynx"",""Ventral surface of tongue, NOS"",""Specified parts of peritoneum"",""Ventricle, NOS"",""Bone of limb, NOS"",""Peritoneum, NOS"",""Pharynx, NOS"",""Pineal gland"",""Pituitary gland"",""Placenta"",""Nasopharynx, NOS"",""Male genital organs, NOS"",""Female genital tract, NOS"",""Central portion of breast"",""Bladder, NOS"",""Lymph nodes of head, face and neck"",""Submandibular gland"",""Superior wall of nasopharynx"",""Supraglottis"",""Tail of pancreas"",""Temporal lobe"",""Testis, NOS"",""Thoracic esophagus"",""Thorax, NOS"",""Thymus"",""Thyroid gland"",""Tongue, NOS"",""Tonsil, NOS"",""Tonsillar fossa"",""Tonsillar pillar"",""Trachea"",""Transverse colon"",""Trigone of bladder"",""Undescended testis"",""Unknown primary site"",""Upper Gum"",""Upper limb, NOS"",""Upper lobe, lung"",""Upper respiratory tract, NOS"",""Overlapping lesion of other and unspecified parts of mouth"",""Overlapping lesion of palate"",""Overlapping lesion of pancreas"",""Overlapping lesion of penis"",""Overlapping lesion of respiratory system and intrathoracic organs"",""Overlapping lesion of retroperitoneum and peritoneum"",""Overlapping lesion of skin"",""Overlapping lesion of small intestine"",""Overlapping lesion of stomach"",""Overlapping lesion of tongue"",""Overlapping lesion of tonsil"",""Overlapping lesion of urinary organs"",""Overlapping lesion of vulva"",""Overlapping lesions of oropharynx"",""Laryngeal commissure"",""Other ill-defined sites"",""Other specified parts of female genital organs"",""Other specified parts of male genital organs"",""Other specified parts of pancreas"",""Lymph nodes of axilla or arm"",""Lymph nodes of inguinal region or leg"",""Lymph nodes of multiple regions"",""Jejunum"",""Kidney, NOS"",""Labium majus"",""Labium minus"",""Lacrimal gland"",""Ovary"",""Palate, NOS"",""Pancreas, NOS"",""Pancreatic duct"",""Parametrium"",""Parathyroid gland"",""Paraurethral gland"",""Parietal lobe"",""Parotid gland"",""Pelvic bones, sacrum, coccyx and associated joints"",""Pelvic lymph nodes"",""Pelvis, NOS"",""Penis, NOS"",""Nasal cavity"",""Nervous system, NOS"",""Nipple"",""Occipital lobe"",""Olfactory nerve"",""Optic nerve"",""Orbit, NOS"",""Oropharynx, NOS"",""Main bronchus"",""Major salivary gland, NOS"",""Mandible"",""Maxillary sinus"",""Meckel diverticulum"",""Mediastinum, NOS"",""Medulla of adrenal gland"",""Meninges, NOS"",""Middle ear"",""Middle lobe, lung"",""Middle third of esophagus"",""Mouth, NOS"",""Mucosa of lip, NOS"",""Mucosa of lower lip"",""Mucosa of upper lip"",""Myometrium"",""Hard palate"",""Head of pancreas"",""Head, face or neck, NOS"",""Heart"",""Hematopoietic system, NOS"",""Hepatic flexure of colon"",""Hypopharyngeal aspect of aryepiglottic fold"",""Hypopharynx, NOS"",""Ileum"",""Ill-defined sites within respiratory system"",""Intestinal tract, NOS"",""Intra-abdominal lymph nodes"",""Intrahepatic bile duct"",""Intrathoracic lymph nodes"",""Islets of Langerhans"",""Isthmus uteri"",""Gastric antrum"",""Gallbladder"",""Axillary tail of breast"",""Laryngeal cartilage"",""Larynx, NOS"",""Lateral floor of mouth"",""Lateral wall of bladder"",""Lateral wall of nasopharynx"",""Lateral wall of oropharynx"",""Lesser curvature of stomach, NOS"",""Lingual tonsil"",""Lip, NOS"",""Liver"",""Long bones of lower limb and associated joints"",""Long bones of upper limb, scapula and associated joints"",""Lower gum"",""Lower limb, NOS"",""Lower lobe, lung"",""Lower third of esophagus"",""Lower-inner quadrant of breast"",""Lower-outer quadrant of breast"",""Lung, NOS"",""Lymph node, NOS"",""Fallopian tube"",""Floor of mouth, NOS"",""Frontal lobe"",""Frontal sinus"",""Fundus of stomach"",""Fundus uteri"",""Exocervix"",""External ear"",""External lip, NOS"",""External lower lip"",""External upper lip"",""Extrahepatic bile duct"",""Eye, NOS"",""Eyelid"",""Duodenum"",""Endocervix"",""Endocrine gland, NOS"",""Endometrium"",""Epididymis"",""Esophagus, NOS"",""Ethmoid sinus"",""Border of tongue"",""Brain stem"",""Brain, NOS"",""Branchial cleft"",""Breast, NOS"",""Broad ligament"",""Cardia, NOS"",""Carotid body"",""Cauda equina"",""Bones of skull and face and associated joints"",""Connective, subcutaneous and other soft tissues of abdomen"",""Connective, subcutaneous and other soft tissues of head, face, and neck"",""Connective, subcutaneous and other soft tissues of lower limb and hip"",""Connective, subcutaneous and other soft tissues of pelvis"",""Connective, subcutaneous and other soft tissues of thorax"",""Connective, subcutaneous and other soft tissues of trunk, NOS"",""Connective, subcutaneous and other soft tissues of upper limb and shoulder"",""Connective, subcutaneous and other soft tissues, NOS"",""Cornea, NOS"",""Corpus uteri"",""Cortex of adrenal gland"",""Cranial nerve, NOS"",""Accessory sinus, NOS"",""Abdominal esophagus"",""Ascending colon"",""Appendix"",""Aortic body and other paraganglia"",""Anterior wall of nasopharynx"",""Anterior wall of bladder"",""Anterior surface of epiglottis"",""Anterior mediastinum"",""Anterior floor of mouth"",""Anterior 2/3 of tongue, NOS"",""Anal canal"",""Ampulla of Vater"",""Gum, NOS"",""Greater curvature of stomach, NOS"",""Glottis"",""Glans penis"",""Gastrointestinal tract, NOS"",""Bone, NOS"",""Bone marrow"",""Body of stomach"",""Body of penis"",""Body of pancreas"",""Blood"",""Bladder neck"",""Biliary tract, NOS"",""Base of tongue, NOS"",""Conjunctiva"",""Commissure of lip"",""Colon, NOS"",""Cloacogenic zone"",""Clitoris"",""Ciliary body"",""Choroid"",""Cheek mucosa"",""Cervix uteri"",""Cervical esophagus"",""Cerebrum"",""Cerebral meninges"",""Cerebellum, NOS"",""Cecum"",""Abdomen, NOS"",""Acoustic nerve"",""Adrenal gland, NOS"",""Anus, NOS"",""Autonomic nervous system, NOS"",""Dorsal surface of tongue, NOS"",""Dome of bladder"",""Descending colon"",""Descended testis""]",required,Site where images are associated,,FALSE +image,performed_imaging_study_typeCode,None,,Missing but required,string,"Imaging Reconstruction Protocol Type Code""",1,14617551,caDSR,,required,A coded value specifying the kind of algorithm used when reconstructing the image from the data acquired during the acquisition process.,,FALSE +image,longitudinal_temporal_event_type,File Longitudinal Event Type,,FALSE,string,Longitudinal Study Temporal Event Type,1,14670294,caDSR,"[""Baseline"",""Enrollment""]",optional,The type of event to which Longitudinal Temporal Offset from Event is relative.,,FALSE +image,longitudinal_temporal_event_offset,File Longitudinal Total Time Elapsed,,FALSE,number,Longitudinal Study Temporal Offset Number,1,14612661,caDSR,,optional,"An offset in days from a particular event of significance. May be fractional. In the context of a clinical trial, this is often the days since enrollment, or the baseline imaging Study.",,FALSE +image,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +MultiplexMicroscopy,MultiplexMicroscopy_id,id,,TRUE,string,,,,,,required,MultiplexMicroscopy identifier,,TRUE +MultiplexMicroscopy,acquisition_method_type,Biospecimen Acquisition Method,,FALSE,string,Biospecimen Acquisition Method Type,2,6626651,caDSR,"[""Pancreaticoduodenectomy"",""Core needle biopsy"",""Forceps Biopsy"",""Not specified"",""Re-excision"",""Punch biopsy"",""Shave biopsy"",""Lymphadenectomy (regional nodes)"",""Sentinel node biopsy"",""Not reported"",""Unknown"",""Not applicable"",""Incisional Biopsy"",""Blood draw"",""Excisional Biopsy"",""Surgical Resection"",""Autopsy"",""Fine needle aspirate"",""Biopsy"",""Other""]",optional,Records the method of acquisition or source for the specimen under consideration,,FALSE +MultiplexMicroscopy,tumor_tissue_type,Biospecimen Composition,,FALSE,string,Tumor Tissue Disease Description Type,1,3288124,caDSR,"[""Premalignant - in situ"",""Tissue"",""Tumor post-therapy"",""Tumor post-neoadjuvant therapy"",""Tumor post-adjuvant therapy"",""Normal"",""Normal distant"",""Normal adjacent"",""Atypia or hyperplasia"",""Unknown"",""Not applicable"",""Not reported"",""Local recurrence"",""Premalignant"",""Xenograft"",""NOS"",""Additional Primary"",""Primary"",""Metastatic"",""Recurrent"",""Tumor specimen from de novo untreated malignancy of the bladder""]",optional,Text that describes the kind of disease present in the tumor specimen as related to a specific timepoint (add rows to select multiple values along with timepoints),,FALSE +MultiplexMicroscopy,tissue_fixative,Biospecimen Fixative,,TRUE,string,Specimen Fixative Type,4,65078,caDSR,"[""95% Ethanol"",""Carbodiimide"",""Dimethylacetamide"",""TCL Lysis Buffer"",""NP40 Lysis Buffer"",""Methacarn"",""Carnoy's Solution"",""Poloxamer"",""CryoStor"",""Acetone"",""Alcohol"",""None"",""RNAlater"",""OCT media"",""Saline"",""Glutaraldehyde"",""Unknown"",""Other"",""Formalin"",""Not applicable"",""Diimidoester"",""Para-benzoquinone"",""PAXgene Tissue"",""Not recorded""]",required,A compound that preserves tissues and cells for microscopic study.,,FALSE +MultiplexMicroscopy,embedding_medium,Biospecimen Embedding Medium,,TRUE,string,Biospecimen Collection Medium Type,1,8037927,caDSR,"[""DMEM"",""DMEM+Serum"",""RPMI+Serum"",""PBS+Serum"",""None""]",required,A material that infiltrates and supports a specimen and preserves its shape and structure for sectioning and microscopy.,,FALSE +MultiplexMicroscopy,staining_method,Image Assay Type,,TRUE,string,Imaging Assay Technology Type,1,7789196,caDSR,"[""CyCIF"",""MERFISH"",""ExSeq"",""Not Applicable"",""MIBI"",""CODEX"",""GeoMX-DSP"",""IMC"",""t-CyCIF"",""IHC"",""mIHC"",""MxIF"",""SABER"",""H&E""]",required,"Any of the various methods that use a dye, reagent, or other material for producing coloration in tissues or microorganisms for microscopic examination.",,FALSE +MultiplexMicroscopy,objective,Image Objective,,FALSE,string,Microscope Device Objective Lens Text,1,7788935,caDSR,,optional,An_objective_is an optical element that gathers light from an object being observed and_focuses_the_light rays_from it to produce a_real image_of the object.,,FALSE +MultiplexMicroscopy,nominal_magnification,Image Nominal Magnification,,FALSE,string,Microscope Device Nominal Magnification Float Value,1,7788940,caDSR,,optional,The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units),,FALSE +MultiplexMicroscopy,immersion,Image Immersion Type,,FALSE,string,Microscope Device Immersion Medium Type,1,8058286,caDSR,"[""Oil"",""Water"",""Air"",""Glycerol"",""Other"",""Multi""]",optional,Immersion medium,,FALSE +MultiplexMicroscopy,lens_numerical_aperture,Image Lense Aperture,,FALSE,string,Microscope Device Lens Numerical Aperture Float Value,1,7788942,caDSR,,optional,The numerical aperture of the lens. Floating point value > 0.,,FALSE +MultiplexMicroscopy,working_distance,Image Working Distance,,FALSE,string,Microscope Device Working Distance Float Value,1,7788943,caDSR,,optional,"The working distance of the lens, expressed as a floating point number. Floating point > 0. Size needs to be specified in microns (um)",,FALSE +MultiplexMicroscopy,imaging_assay_type,Image Assay Type,,TRUE,string,Imaging Assay Technology Type,1,7789196,caDSR,"[""CyCIF"",""MERFISH"",""ExSeq"",""Not Applicable"",""MIBI"",""CODEX"",""GeoMX-DSP"",""IMC"",""t-CyCIF"",""IHC"",""mIHC"",""MxIF"",""SABER"",""H&E""]",required,Type of imaging assay,,FALSE +MultiplexMicroscopy,pyramid,Image Pyramidal,,FALSE,string,Image Processing Pyramid Representation True False Indicator,1,7788945,caDSR,"[""True"",""False""]",optional,The data file contains an image pyramid,,FALSE +MultiplexMicroscopy,physical_size_x,Image Physical Size X,,FALSE,string,Pixel X-Dimension Float Value,1,7786584,caDSR,,optional,Physical size (X-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um),,FALSE +MultiplexMicroscopy,physical_size_y,Image Physical Size Y,,FALSE,string,Pixel Y-Dimension Float Value,1,7786585,caDSR,,optional,Physical size (Y-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um),,FALSE +MultiplexMicroscopy,physical_size_z,Image Physical Size Z,,FALSE,string,Pixel Z-Dimension Float Value,1,7786586,caDSR,,optional,Physical size (Z-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um),,FALSE +MultiplexMicroscopy,size_c,Image Channel Size,,FALSE,string,OME TIFF Channel Count,1,7794859,caDSR,,optional,Number of channels. Integer >= 1,,FALSE +MultiplexMicroscopy,size_t,Image Number of Timepoints,,FALSE,string,OME TIFF Timepoint Count,1,7794860,caDSR,,optional,Number of time points. Integer >= 1,,FALSE +MultiplexMicroscopy,size_x,Image X Pixels,,FALSE,string,OME TIFF X-Dimension Pixel Measurement,1,7788567,caDSR,"[""οΏ½οΏ½m""]",optional,Size of image: X dimension (in pixels). Integer >= 1,,FALSE +MultiplexMicroscopy,size_y,Image Y Pixels,,FALSE,string,OME TIFF Y-Dimension Pixel Measurement,1,7788568,caDSR,"[""οΏ½οΏ½m""]",optional,Size of image: Y dimension (in pixels). Integer >= 1,,FALSE +MultiplexMicroscopy,size_z,Image Z Pixels,,FALSE,string,OME TIFF Z-Dimension Pixel Measurement,1,7788569,caDSR,"[""οΏ½οΏ½m""]",optional,Size of image: Z dimension (in pixels). Integer >= 1,,FALSE +MultiplexMicroscopy,channel_metadata_filename,ImagingChannel Key,Use to select file name,TRUE,string,Channel Analysis Metadata Electronic File Name Text,1,7787678,caDSR,,required,File name of uploaded companion CSV file containing channel-level metadata details,,FALSE +MultiplexMicroscopy,channel_metadata_file_url_in_cds,None,,FALSE,string,Electronic File Pathname Text,2,11556141,caDSR,,optional,Electronic file pathname text,,FALSE +MultiplexMicroscopy,channel_id,ImagingChannel_id,,TRUE,string,OME Tagged Image File Format Channel Identifier,1,14765171,caDSR,,required,The unique channel identifier for each channel in this image must match the corresponding field in the OME-TIFF header,,FALSE +MultiplexMicroscopy,channel_name,Channel Name,,TRUE,string,OME Tagged Image File Format Channel Name,1,14765172,caDSR,,required,Channel label for each channel in this image must match the corresponding field in the OME-TIFF header,,FALSE +MultiplexMicroscopy,cycle_number,Channel Cycle Number,,FALSE,string,Multiplex Imaging Reagent Cycle Number Integer,1,14765176,caDSR,,optional,the cycle # in which the co-listed reagent(s) was(were) used,,FALSE +MultiplexMicroscopy,sub_cycle_number,Channel Sub-cycle Number,,FALSE,string,Multiplex Imaging Reagent Sub-Cycle Number Integer,1,14765180,caDSR,,optional,sub-cycle #,,FALSE +MultiplexMicroscopy,target_name,Channel Target Name,,FALSE,string,Multiplex Imaging Reagent Sub-Cycle Number Integer,1,14765180,caDSR,,optional,short descriptive name (abbreviation) for this target (antigen),,FALSE +MultiplexMicroscopy,antibody_name,Channel Antibody Name,,FALSE,string,Tissue Slide IHC Antibody Used Type,1,14765184,caDSR,,optional,short descriptive name for this antibody,,FALSE +MultiplexMicroscopy,rrid_identifier,Channel Resource ID,,FALSE,string,Multiplex Imaging Research Resource Identifier Text,1,14767247,caDSR,,optional,Research Resource Identifier,,FALSE +MultiplexMicroscopy,fluorophore,Channel Fluorophore,,FALSE,string,Multiplex Imaging Fluorescent Dye Text,1,14767255,caDSR,,optional,Fluorescent dye label,,FALSE +MultiplexMicroscopy,clone,Channel Antibody Clone,,FALSE,string,Multiplex Imaging Clone Unique Identifier,1,14767258,caDSR,,optional,Unique clone identifier,,FALSE +MultiplexMicroscopy,lot,Channel Antibody Lot,,FALSE,string,Multiplex Imaging Vendor Lot Number Text,1,14769695,caDSR,,optional,lot number from vendor,,FALSE +MultiplexMicroscopy,catalog_number,Channel Antibody Catalog Number,,FALSE,string,Multiplex Imaging Vendor Catalog Number Text,1,14767261,caDSR,,optional,catalog number from vendor,,FALSE +MultiplexMicroscopy,excitation_wavelength,Channel Excitation Wavelength,,FALSE,string,Multiplex Imaging Excitation Wavelength Number,1,14765187,caDSR,"[""1"",""2"",""3"",""4"",""5"",""6"",""7"",""8"",""9"",""10"",""0""]",optional,center/peak of the excitation spectrum (nm),,FALSE +MultiplexMicroscopy,emission_wavelength,Channel Emission Wavelength,,FALSE,string,Multiplex Imaging Emission Wavelength Number,1,14767264,caDSR,"[""1"",""2"",""3"",""4"",""5"",""6"",""7"",""8"",""9"",""10"",""0""]",optional,center/peak of the emission spectrum (nm),,FALSE +MultiplexMicroscopy,excitation_bandwidth,Channel Excitation Bandwidth,,FALSE,string,Multiplex Imaging Excitation Bandwidth Number,1,14765190,caDSR,"[""1"",""2"",""3"",""4"",""5"",""6"",""7"",""8"",""9"",""10"",""0""]",optional,nominal width of excitation spectrum (nm),,FALSE +MultiplexMicroscopy,emission_bandwidth,Channel Emission Bandwidth,,FALSE,string,Multiplex Imaging Emission Bandwidth Number,1,14765193,caDSR,"[""1"",""2"",""3"",""4"",""5"",""6"",""7"",""8"",""9"",""10"",""0""]",optional,nominal width of emission spectrum (nm),,FALSE +MultiplexMicroscopy,metal_isotope_element_abbreviation,Channel Metal Symbol,,FALSE,string,Multiplex Imaging Isotope Abbreviation Name,1,14765198,caDSR,,optional,Element abbreviation,,FALSE +MultiplexMicroscopy,metal_isotope_element_mass,Channel Metal Isotope,,FALSE,string,Multiplex Imaging Isotope Element Number Identifier,1,14765201,caDSR,,optional,Element mass number,,FALSE +MultiplexMicroscopy,oligo_barcode_upper_strand,Channel Oligo Barcode Upper Strand,,FALSE,string,Multiplex Imaging Oligonucleotide Barcode Upper Strand Text,1,14765205,caDSR,,optional,DNA barcode used for labeling,,FALSE +MultiplexMicroscopy,oligo_barcode_lower_strand,Channel Oligo Barcode Lower Strand,,FALSE,string,Multiplex Imaging Oligonucleotide Barcode Lower Strand Text,1,14765208,caDSR,,optional,DNA barcode used for labeling,,FALSE +MultiplexMicroscopy,dilution,Channel Probe Dilution Ratio,,FALSE,string,Multiplex Imaging Final Dilution Ratio Number,1,14767270,caDSR,"[""1"",""2"",""3"",""4"",""5"",""6"",""7"",""8"",""9"",""10"",""0""]",optional,Final dilution ratio used in experiment,,FALSE +MultiplexMicroscopy,concentration,Channel Probe Concentration,,FALSE,string,Multiplex Imaging Final Concentration Number,1,14768386,caDSR,"[""1"",""2"",""3"",""4"",""5"",""6"",""7"",""8"",""9"",""10"",""0""]",optional,Final concentration used in experiment,,FALSE +MultiplexMicroscopy,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +NonDICOMCTimages,NonDICOMCTimages_id,None,,Missing but required,string,,,,,,required,NonDICOMCTimages identifier,,TRUE +NonDICOMCTimages,CTAquisitionProtocolElement_singleCollimationWidth,None,,FALSE,string,Image Single Collimation Width 8 Byte Millimeter Number,1,2903347,caDSR,,optional,"The width of a single row of acquired data. The units are of linear distance, e.g. mm.",,FALSE +NonDICOMCTimages,CTAquisitionProtocolElement_totalCollimationWidth,None,,Missing but required,string,Image Total Collimation Width 8 Byte Millimeter Number,1,2903328,caDSR,,required,"The width of the total collimation over the area of active x-ray detection. The units are of linear distance, e.g. mm.",,FALSE +NonDICOMCTimages,CTAquisitionProtocolElement_gantryDetectorTilt,None,,Missing but required,string,Image Gantry Detector Tilt 16 Character Number,1,2656117,caDSR,,required,"Nominal angle of tilt in degrees of the scanning gantry. The units are of plane angle , e.g. degrees. Zero degrees means the gantry is not tilted, negative degrees are when the top of the gantry is tilted away from where the table enters the gantry.",,FALSE +NonDICOMCTimages,CTAquisitionProtocolElement_spiralPitchFactor,None,,Missing but required,string,Computed Tomography Pitch Factor Number,1,2414556,caDSR,"[""e.g., 2:1""]",required,"Ratio of the distance that the table moves during a complete revolution of the source around the gantry orbit, to the width of the total collimation over the area of active x-ray detection. The units are of unity.",,FALSE +NonDICOMCTimages,CTAquisitionProtocolElement_ctdiVol,None,,Missing but required,string,Computed Tomography Dose Index Volume Quantity 8 Byte Number,1.1,3882991,caDSR,,required,"The average dose over the total volume scanned for the selected CT conditions of operation (calculated according to IEC 60601-2-44, Ed.2.1 (Clause 29.1.103.4)). The units are energy dose, e.g. mGy.",,FALSE +NonDICOMCTimages,CTAquisitionProtocolElement_ctdiPhantomTypeCode,None,,Missing but required,string,Imaging Technique CTDI Phantom Type Sequence of Items Text,1,14612683,caDSR,,required,The type of phantom to use for CTDI measurement according to IEC 60601-2-44,,FALSE +NonDICOMCTimages,CTAquisitionProtocolElement_kVp,None,,Missing but required,string,Image Kilovolt Peak Float 16 Number,1,2904496,caDSR,,required,Peak kilovoltage output of the x-ray generator. The units are of electrical potential.,,FALSE +NonDICOMCTimages,CTAquisitionProtocolElement_exposureModulationType_Code,None,,FALSE,string,Imaging Technique Exposure Modulation Type,1,14617524,caDSR,"[""NONE"",""ANGULAR"",""LONGITUDINAL"",""ECG-BASED"",""ORGAN-BASED""]",optional,The manner in which tube current is varied in order to limit the dose.,,FALSE +NonDICOMCTimages,CTImageReconstructionProtocolElement_convolutionKernel,None,,FALSE,string,Image Convolution Kernel 16 Character Text,1,2656119,caDSR,,optional,A label describing the mathematical operations used to reconstruct images from the acquired data. The values for this attribute are vendor specific and not coded.,,FALSE +NonDICOMCTimages,CTImageReconstructionProtocolElement_convolutionKernelGroupCode,None,,FALSE,string,Imaging Technique Convolution Kernel Group Name,1,14617525,caDSR,,optional,A coded value specifying the family of mathematical operations to use to reconstruct images from the acquired data,,FALSE +NonDICOMCTimages,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +NonDICOMMRimages,NonDICOMMRimages_id,None,,Missing but required,string,,,,,,required,NonDICOMMRimages identifier,,TRUE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_echoPulseSequenceCategoryCode,None,,FALSE,string,Image Acquisition Spin-Echo Pulse Sequence Code Category,1,14645641,caDSR,"[""SPIN"",""GRADIENT"",""BOTH""]",optional,A coded value specifying an echo category of pulse sequences.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_diffusionBValue,None,,FALSE,string,Imaging Technique MR Diffusion B Value Number,1,14607706,caDSR,,optional,"The factor by which the acquisition is sensitized to the Brownian motion of water molecules. The units are of time/area, e.g. s/mm2",,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_diffusionDirectionalityCode,None,,FALSE,string,Imaging Technique Diffusion Directionality Type,1,14616426,caDSR,"[""DIRECTIONAL"",""BMATRIX"",""ISOTROPIC"",""NONE""]",optional,"A coded value specifying whether diffusion conditions for the frame are directional, or isotropic with respect to direction",,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_magneticFieldStrength,None,,FALSE,string,Imaging Technique Magnetic Field Strength Number,1,14607707,caDSR,,optional,"A vector quantity indicating the ability of a magnetic field to exert a force on moving electric charges. [The American HeritageοΏ½οΏ½ Science Dictionary]. The units are of magnetic flux density, e.g. tesla.",,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_resonantNucleusCode,None,,FALSE,string,Image Acquisition Resonant Nucleus Code,1,14616427,caDSR,"[""1H"",""3HE"",""7LI"",""13C"",""19F"",""23NA"",""31P"",""129XE""]",optional,A coded value specifying the atomic nucleus that is the target of the acquisition,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_acquisitionContrastCode,None,,FALSE,string,Image Acquisition Contrast Type,1,14616428,caDSR,"[""DIFFUSION"",""FLOW_ENCODED_Flow Encoded contrast"",""FLUID_ATTENUATED_Fluid Attenuated T2 weighted contrast"",""PERFUSION_Perfusion weighted contrast"",""PROTON_DENSITY_Proton Density weighted contrast"",""STIR_Short Tau Inversion Recovery"",""TAGGING_Superposition of thin saturation bands onto image"",""T1_T1 weighted contrast"",""T2_T2 weighted contrast"",""T2_STAR_T2* weighted contrast"",""TOF_Time Of Flight weighted contrast""]",optional,A coded value specifying the inherent (as opposed to exogenous) contrast in the acquisition.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_inversionRecoveryIndicator,None,,FALSE,string,Image Acquisition Inversion Recovery Indicator,1,14607722,caDSR,"[""Yes"",""No""]",optional,Specifies whether an inversion recovery preparatory sequence is used in the acquisition.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_pulseSequenceName,None,,FALSE,string,Image Acquisition Pulse Sequence Pulse Sequence Name Text,1,14608594,caDSR,,optional,Name of the pulse sequence that is used for the acquisition. This is usually a vendor-specific name.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_multipleSpinEchoIndicator,None,,FALSE,string,Imaging Technique Multiple Spin Echo Indicator,1,14608595,caDSR,"[""Yes"",""No""]",optional,Specifies whether different lines in k-space are collected for a single frame.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_phaseContrastIndicator,None,,FALSE,string,Image Phase Contrast Indicator,1,14608601,caDSR,"[""Yes"",""No""]",optional,Specifies whether this is a pulse sequence in which the flowing spins are velocity encoded in phase.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_timeOfFlightContrastIndicator,None,,FALSE,string,Imaging Technique Time of Flight Contrast Indicator,1,14608649,caDSR,"[""Yes"",""No""]",optional,Specifies whether contrast is created by the inflow of blood in the saturated plane.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_arterialSpinLabelingContrastCode,None,,FALSE,string,Imaging Technique Arterial Spin Labeling Contrast Name,1,14616429,caDSR,,optional,A coded value specifying how arterial water is used as a diffusable tracer.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_steadyStatePulseSequenceCode,None,,FALSE,string,Image Acquisition Steady State Pulse Sequence Type,1,14616430,caDSR,"[""FREE PRECESSION"",""TRANSVERSE"",""TIME REVERSED"",""LONGITUDINAL"",""NONE""]",optional,A coded value specifying how residual transverse magnetization is maintained during the acquisition.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_echoPlanarPulseSequenceIndicator,None,,FALSE,string,Image Acquisition Echo Planar Pulse Sequence Indicator,1,14612651,caDSR,"[""Yes"",""No""]",optional,Specifies whether multiple echos of different phase steps are acquired using rephasing gradients instead of repeated 180-degree pulses.,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_saturationRecoveryIndicator,None,,FALSE,string,Imaging Technique Saturation Recovery Indicator,1,14612652,caDSR,"[""Yes"",""No""]",optional,Specifies whether a saturation recovery pulse sequence is used,,FALSE +NonDICOMMRimages,MRImageAcquisitionProtocolElement_spectrallySelectedSuppressionCode,None,,FALSE,string,Imaging Technique Spectrally Selected Suppression Type,1,14616431,caDSR,"[""FAT"",""WATER"",""FAT AND WATER"",""SILICON GEL"",""NONE""]",optional,A coded value specifying the type of substance-specific signal suppression is used.,,FALSE +NonDICOMMRimages,MRImageReconstructionProtocolElement_complexImageComponentCode,None,,FALSE,string,Imaging Technique Complex Image Component Type,1,14616432,caDSR,"[""REAL"",""IMAGINARY"",""PHASE"",""MAGNITUDE""]",optional,"A coded value specifying the channel of the quadrature detected data, or the combination derived from those channels, used to reconstruct the image",,FALSE +NonDICOMMRimages,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +NonDICOMpathologyImages,NonDICOMpathologyImages_id,id,,TRUE,string,,,,,,required,NonDICOMpathologyImages identifier,,TRUE +NonDICOMpathologyImages,acquisition_method_type,Biospecimen Acquisition Method,,FALSE,string,Biospecimen Acquisition Method Type,2,6626651,caDSR,"[""Pancreaticoduodenectomy"",""Core needle biopsy"",""Forceps Biopsy"",""Not specified"",""Re-excision"",""Punch biopsy"",""Shave biopsy"",""Lymphadenectomy (regional nodes)"",""Sentinel node biopsy"",""Not reported"",""Unknown"",""Not applicable"",""Incisional Biopsy"",""Blood draw"",""Excisional Biopsy"",""Surgical Resection"",""Autopsy"",""Fine needle aspirate"",""Biopsy"",""Other""]",optional,Records the method of acquisition or source for the specimen under consideration,,FALSE +NonDICOMpathologyImages,tumor_tissue_type,Biospecimen Composition,,FALSE,string,Tumor Tissue Disease Description Type,1,3288124,caDSR,"[""Premalignant - in situ"",""Tissue"",""Tumor post-therapy"",""Tumor post-neoadjuvant therapy"",""Tumor post-adjuvant therapy"",""Normal"",""Normal distant"",""Normal adjacent"",""Atypia or hyperplasia"",""Unknown"",""Not applicable"",""Not reported"",""Local recurrence"",""Premalignant"",""Xenograft"",""NOS"",""Additional Primary"",""Primary"",""Metastatic"",""Recurrent"",""Tumor specimen from de novo untreated malignancy of the bladder""]",optional,Text that describes the kind of disease present in the tumor specimen as related to a specific timepoint (add rows to select multiple values along with timepoints),,FALSE +NonDICOMpathologyImages,tissue_fixative,Biospecimen Fixative,,TRUE,string,Specimen Fixative Type,4,65078,caDSR,"[""95% Ethanol"",""Carbodiimide"",""Dimethylacetamide"",""TCL Lysis Buffer"",""NP40 Lysis Buffer"",""Methacarn"",""Carnoy's Solution"",""Poloxamer"",""CryoStor"",""Acetone"",""Alcohol"",""None"",""RNAlater"",""OCT media"",""Saline"",""Glutaraldehyde"",""Unknown"",""Other"",""Formalin"",""Not applicable"",""Diimidoester"",""Para-benzoquinone"",""PAXgene Tissue"",""Not recorded""]",required,A compound that preserves tissues and cells for microscopic study.,,FALSE +NonDICOMpathologyImages,embedding_medium,Biospecimen Embedding Medium,,TRUE,string,Biospecimen Collection Medium Type,1,8037927,caDSR,"[""DMEM"",""DMEM+Serum"",""RPMI+Serum"",""PBS+Serum"",""None""]",required,A material that infiltrates and supports a specimen and preserves its shape and structure for sectioning and microscopy.,,FALSE +NonDICOMpathologyImages,staining_method,Image Assay Type,,TRUE,string,Imaging Assay Technology Type,1,7789196,caDSR,"[""CyCIF"",""MERFISH"",""ExSeq"",""Not Applicable"",""MIBI"",""CODEX"",""GeoMX-DSP"",""IMC"",""t-CyCIF"",""IHC"",""mIHC"",""MxIF"",""SABER"",""H&E""]",required,"Any of the various methods that use a dye, reagent, or other material for producing coloration in tissues or microorganisms for microscopic examination.",,FALSE +NonDICOMpathologyImages,objective,Image Objective,,FALSE,string,Microscope Device Objective Lens Text,1,7788935,caDSR,,optional,An_objective_is an optical element that gathers light from an object being observed and_focuses_the_light rays_from it to produce a_real image_of the object.,,FALSE +NonDICOMpathologyImages,nominal_magnification,Image Nominal Magnification,,FALSE,string,Microscope Device Nominal Magnification Float Value,1,7788940,caDSR,,optional,The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units),,FALSE +NonDICOMpathologyImages,immersion,Image Immersion Type,,FALSE,string,Microscope Device Immersion Medium Type,1,8058286,caDSR,"[""Oil"",""Water"",""Air"",""Glycerol"",""Other"",""Multi""]",optional,Immersion medium,,FALSE +NonDICOMpathologyImages,lens_numerical_aperture,Image Lense Aperture,,FALSE,string,Microscope Device Lens Numerical Aperture Float Value,1,7788942,caDSR,,optional,The numerical aperture of the lens. Floating point value > 0.,,FALSE +NonDICOMpathologyImages,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +NonDICOMPETimages,NonDICOMPETimages_id,None,,Missing but required,string,,,,,,required,NonDICOMPETimages identifier,,TRUE +NonDICOMPETimages,PETImagingAcquisitionProtocolElement_gantryDetectorTilt,None,,FALSE,string,Image Gantry Detector Tilt 16 Character Number,1,2656117,caDSR,,optional,"Nominal angle of tilt in degrees of the scanning gantry. The units are of plane angle , e.g. degrees. Zero degrees means the gantry is not tilted, negative degrees are when the top of the gantry is tilted away from where the table enters the gantry.",,FALSE +NonDICOMPETimages,Radiopharmaceutical_radionuclideCode,None,,FALSE,string,Imaging Technique Radionuclide Code Text,1,14612653,caDSR,,optional,A coded value that specifies the radioactive isotope in the radiophamaceutical.,,FALSE +NonDICOMPETimages,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +NonDICOMradiologyAllModalities,NonDICOMradiologyAllModalities_id,None,,Missing but required,string,,,,,,required,NonDICOMradiologyAllModalities identifier,,TRUE +NonDICOMradiologyAllModalities,performed_imaging_study_description,None,,Missing but required,string,Image Study Description 64 Character Text,2.1,2182389,caDSR,,required,"The textual representation of the certain or salient aspects, characteristics, or features of the imaging study. [Adapted from www.businessdictionary.com]",,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_admittingDiagnosisCode,None,,Missing but required,string,Image Study Admitting Diagnosis Description 64 Character Text,1,2902328,caDSR,,required,The identified disease(s) or illness(es) at the time of the admission during which imaging was performed.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_nonAcquisitionModalitiesInStudyCode,None,,Missing but required,string,Imaging Technology DICOM Modality Type,1,12137353,caDSR,"[""MG"",""NM"",""ECG"",""VA"",""TEXTUREMAP"",""STAIN"",""SRF"",""SEG"",""RWV"",""RESP"",""REG"",""POS"",""PLAN"",""OSS"",""OPV"",""OPTENF"",""OPTBSV"",""OPT"",""OPM"",""OCT"",""OAM"",""M3D"",""LEN"",""KER"",""IVOCT"",""IOL"",""FID"",""EOG"",""EMG"",""EEG"",""DOC"",""DMS"",""CTPROTOCOL"",""BMD"",""BDUS"",""ASMT"",""AR"",""MS"",""MR"",""OP"",""OT"",""PR"",""PT"",""PX"",""RF"",""RG"",""RTDOSE"",""RTIMAGE"",""RTPLAN"",""RTRECORD"",""RTSTRUCT"",""SM"",""SMR"",""SR"",""ST"",""TG"",""BI"",""AS"",""AU"",""CD"",""CF"",""CP"",""CR"",""US"",""VF"",""XA"",""XC"",""CS"",""CT"",""DD"",""DF"",""DG"",""DM"",""DS"",""DX"",""EC"",""EPS"",""ES"",""FA"",""FS"",""GM"",""HC"",""HD"",""IO"",""IVUS"",""KO"",""LP"",""LS"",""MA""]",required,A coded value specifying the type of equipment that created the images in this imaging study other than that used to acquire the original data.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_lossyImageCompressionIndicator,None,,Missing but required,string,Image Lossy Compression Code,1,2659474,caDSR,"[""01"",""00""]",required,Specifies whether any images in the study are irreversibly altered during encoding at any time during its life.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_summary,None,,Missing but required,string,Imaging Study Process Protocol Element Summary Text,1,14670299,caDSR,,required,"A brief statement about the characteristics of this element, which is intended for use by the radiologist, technologist and/or physicist during management of the imaging protocol to understand the characteristics of the element in the protocol.",,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_primaryAnatomicSiteCode,None,,Missing but required,string,Image Study Primary Anatomic Site Sequence of Items Text,1,14612662,caDSR,,required,A coded value specifying the anatomic location that is the focus of this imaging process protocol element.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_acquisitionTypeCode,None,,FALSE,string,Image Study Spatial Acquisition Type Code,1,14670301,caDSR,"[""3D""]",optional,A coded value specifying spatial aspects of the mechanism of data collection.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_cardiacSynchronizationTechniqueCode,None,,FALSE,string,Image Study Cardiac Synchronization Technique Code Name,1,14617521,caDSR,"[""REALTIME"",""PROSPECTIVE"",""RETROSPECTIVE"",""PACED"",""NONE""]",optional,The means used to coordinate the collection or reconstruction of data with the cardiac cycle.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_dataCollectionDiameter,None,,Missing but required,string,Image Acquisition Data Collection Location Diameter Number,1,14612665,caDSR,,required,The diameter of the region over which information is acquired.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_respiratoryMotionTechniqueCode,None,,Missing but required,string,Image Study Respiratory Motion Technique Code Name,1,14617522,caDSR,"[""BREATH-HOLD"",""REALTIME"",""GATING"",""TRACKING"",""RETROSPECTIVE"",""CORRECTION"",""NONE""]",required,The means to be used to coordinate the collection or reconstruction of data with breathing.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_bodyPositionCode,None,,FALSE,string,Image Study Body Position Name,1,14617523,caDSR,"[""Standing"",""Trendelenburg"",""Supine""]",optional,A coded value specifying the 3-dimensional spatial orientation of a subject during this imaging acquisition protocol element.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_algorithmCode,None,,Missing but required,string,Imaging Reconstruction Protocol Algorithm Code Text,1,14617557,caDSR,,required,A coded value specifying the algorithm to use when reconstructing the image from the data acquired during the acquisition process,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_reconstructionFieldOfViewHeight,None,,Missing but required,string,Imaging Reconstruction Protocol Field of View Height Number,1,14612672,caDSR,,required,The vertical dimension of the rectangular region from which data is used in creating the reconstruction of the image.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_reconstructionFieldOfViewWidth,None,,Missing but required,string,Imaging Reconstruction Protocol Field of View Width Number,1,14612674,caDSR,,required,The horizontal dimension of the rectangular region from which data is used in creating the reconstruction of the image.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_reconstructionDiameter,None,,Missing but required,string,Reconstruction Diameter in Millimeter(s),1,2182085,caDSR,,required,The diameter of the region from which data is used in creating the reconstruction of the image.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_sliceThickness,None,,Missing but required,string,Image Plane Slice Thickness Float or Fixed-point Millimeter Number,2,3113185,caDSR,,required,The cross plane dimension of the reconstructed image.,,FALSE +NonDICOMradiologyAllModalities,performed_imaging_study_reconstructionInterval,None,,Missing but required,string,Imaging Reconstruction Protocol Reconstruction Interval Millimeter Number,1,14612682,caDSR,,required,"The cross plane distance between the centers of adjacent, parallel reconstructed images.",,FALSE +NonDICOMradiologyAllModalities,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +proteomic,proteomic_info_id,id,,TRUE,string,,,,,,required,"Proteomic info identifier, the ID property for the node proteomic.",,TRUE +proteomic,aliquot_id,Biospecimen Key,,FALSE,string,Specimen Aliquot Identifier,1,15105438,caDSR,,optional,One or more characters used to identify a portion of a sample.,,FALSE +proteomic,analytical_fractions,Biospecimen Analytical Fractions,,TRUE,string,Laboratory Procedure Proteomic Profiling Analytical Fraction Type,1,15112968,caDSR,"[""Lipidome"",""Metabolome"",""Phosphoproteome"",""Proteome"",""Ubiquitylome"",""Acetylome"",""Glycoproteome""]",required,The portion of a specimen that was isolated from the whole and collected via a fractionation process to be subjected to further analysis.,,FALSE +proteomic,instrument_make,Proteomics Instrument Make,,TRUE,string,Equipment Manufacturer Model Name Text,1,2866141,caDSR,,required,"The words that describe an entity that produces finished goods used to perform a diagnostic, therapeutic or research activity.",,FALSE +proteomic,proteomic_instrument_model,Proteomics Instrument Model,,FALSE,string,Equipment Manufacturer Model Name Text,2.1,2413274,caDSR,,optional,"The words that describe the style or design of an entity""""s finished goods used to perform a diagnostic, therapeutic or research activity.",,FALSE +proteomic,proteomic_design_description,Proteomics Experimental Design Description,,TRUE,string,Research Activity Proteomics Study Design Description Text,1,15089939,caDSR,,required,The description of the analysis of proteins using a combination of techniques to quantify and to characterize proteins.,,FALSE +proteomic,manufacturer_model_name,None,,FALSE,string,Equipment Manufacturer Model Name Text,2.1,2413274,caDSR,"[""Orbitrap""]",optional,"The words that describe the style or design of an entity's finished goods used to perform a diagnostic, therapeutic or research activity.",,FALSE +proteomic,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE +version,data_version_id,None,,Missing but required,string,,,,,,required,A static data version ID that is used primarily to assist in data loading. This ID will be used as a reference to update the existing data_version node instead of creating a new one with each version change.,,TRUE +version,data_version,None,,Missing but required,string,,,,,,required,The version of the data that has been loaded. This should be similar to semantic versioning format (major.minor.patch).,,FALSE +version,datetime,None,,Missing but required,string,,,,,,required,An ISO8601 formatted datetime that records when the dataset was last edited.,,FALSE +version,model_version,None,,Missing but required,string,,,,,,required,The version of the model used to load the data,,FALSE +version,description,None,,FALSE,string,,,,,,optional,Any additional information about the dataset that might be relevant formatted as a short sentence or paragraph,,FALSE +version,crdc_id,None,,FALSE,string,,,,,,optional,The crdc_id is a unique identifier that is generated by CRDC Submission Portal,,FALSE \ No newline at end of file diff --git a/modules/shared/assay.csv b/modules/shared/assay.csv index 89cfe56c..943eede7 100644 --- a/modules/shared/assay.csv +++ b/modules/shared/assay.csv @@ -379,4 +379,5 @@ Tuba-Seq,Tumor barcoding with ultradeep barcode sequencing,,,FALSE,,Assay,,EFO,, SDS-PAGE,,,,FALSE,,Assay,,,,,,,,OB 2024-02-05 Cell Fractionation,,,,FALSE,,Assay,,,,,,,,OB 2024-02-05 Multiscale Light Sheet Microscopy,,,,FALSE,,Assay,,,,,,,,OB 2024-07-18 -Light Sheet Microscopy,,,,FALSE,,Assay,,,,,,,,OB 2024-09-26 \ No newline at end of file +Light Sheet Microscopy,,,,FALSE,,Assay,,,,,,,,OB 2024-09-26 +CODEX,,,,FALSE,,Assay,,,,,,,,OB 2025-05-20 diff --git a/modules/shared/dataset_file_format.csv b/modules/shared/dataset_file_format.csv index 1c28728e..7f15a8b0 100644 --- a/modules/shared/dataset_file_format.csv +++ b/modules/shared/dataset_file_format.csv @@ -9,6 +9,7 @@ COOL,,,,FALSE,,Dataset File Formats,,,,,,,, CSV,,,,FALSE,,Dataset File Formats,,,,,,,, DAE,,,,FALSE,,Dataset File Formats,,,,,,,, DB,,,,FALSE,,Dataset File Formats,,,,,,,, +DCC,,,,FALSE,,Dataset File Formats,,,,,,,, DS_Store,,,,FALSE,,Dataset File Formats,,,,,,,, FASTA,,,,FALSE,,Dataset File Formats,,,,,,,, FASTQ,,,,FALSE,,Dataset File Formats,,,,,,,, diff --git a/modules/sharingPlans/annotationProperty.csv b/modules/sharingPlans/annotationProperty.csv index b22aff9b..8f91ce25 100644 --- a/modules/sharingPlans/annotationProperty.csv +++ b/modules/sharingPlans/annotationProperty.csv @@ -2,7 +2,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsO DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like diff --git a/modules/study/annotationProperty.csv b/modules/study/annotationProperty.csv index a63a52f6..758dbc66 100644 --- a/modules/study/annotationProperty.csv +++ b/modules/study/annotationProperty.csv @@ -1,11 +1,11 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License, Study Source Geography, Study Data Permission, Study Data Tier",FALSE,,,Grant View,, +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study Number of Samples, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License, Study Source Geography, Study Data Permission, Study Data Tier",FALSE,,,Grant View,, Study Name,Name of the study,,,TRUE,,,,,str Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.",,,TRUE,,,,,str Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.",,,FALSE,,,,,str Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. Maps to DUOplus2.,,,TRUE,,,,CDS/collection,int +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject.,,,TRUE,,,,CDS/collection,int Study De-identification Method Type,General description of the de-identification method. Maps to DUOplus3.,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str @@ -16,3 +16,4 @@ Study Index Date,"The reference event associated with timepoints in this study. Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,DUOplus,list like Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,"Agreement, Attestation, Award, Other",,FALSE,,,,DUOplus,list like Study Data Tier,The access tier(s) associated with the data in this study. Maps to DUOplus5.,"Anonymous, Open, Controlled, Private",,FALSE,,,,DUOplus,list like +Study Number of Samples,The number of specimens associated with systematic investigation into a subject.,,,TRUE,,,,GC v6.0.2/study.number_of_samples,int diff --git a/qc_model/mc2_qc.model.csv b/qc_model/mc2_qc.model.csv index 6968ee9a..8ac04d40 100644 --- a/qc_model/mc2_qc.model.csv +++ b/qc_model/mc2_qc.model.csv @@ -1,9 +1,9 @@ Attribute,Description,Valid Values,DependsOn,Required,Properties,Parent,DependsOn Component,Source,Validation Rules -Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, +Biospecimen,Metadata attributes for describing a tissue or tumor sample,,"Component, Biospecimen_id, Study Key, Individual Key, Model Key, Parent Biospecimen Key, Biospecimen Type Category, Biospecimen Type, Biospecimen Tumor Status, Biospecimen Acquisition Method, Biospecimen Incidence Type, Biospecimen Stain, Biospecimen Species, Biospecimen Sex, Biospecimen Age at Collection, Biospecimen Age at Collection Unit, Biospecimen Disease Type, Biospecimen Primary Site, Biospecimen Primary Diagnosis, Biospecimen Site of Origin, Biospecimen Tumor Subtype, Biospecimen Tumor Grade, Biospecimen Known Metastasis Sites, Biospecimen Tumor Morphology, Biospecimen Composition, Biospecimen Preservation Method, Biospecimen Fixative, Biospecimen Embedding Medium, Biospecimen Anatomic Site, Biospecimen Site of Resection or Biopsy, Biospecimen Timepoint Type, Biospecimen Timepoint Offset, Biospecimen Collection Site, Biospecimen Treatment Type, Biospecimen Therapeutic Agent, Biospecimen Treatment Response, Biospecimen Last Known Disease Status, Biospecimen BioSample Identifier, Biospecimen Description",FALSE,,,"Individual, Model",, Biospecimen_id,"Unique ID associated with a biosample, used as a key for record linking and updates",,,TRUE,,,,MC2,unique Biospecimen Type Category,The general category of this biospecimen.,"Analyte, Ascites, Blood, Bone Marrow, Cells, Fluids, Mouth Rinse, Sputum, Stool, Tissue, Urine",,TRUE,,,,HTAN, -Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,TRUE,,,,HTAN, -Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like +Biospecimen Type,The type of biospecimen,"Additional - New Primary, Additional Metastatic, Analyte, Benign Neoplasms, Blood Buffy Coat, Blood Clot, Blood Derived Cancer - Bone Marrow, Blood Derived Cancer - Bone Marrow; Post-treatment, Blood Derived Cancer - Peripheral Blood, Blood Derived Cancer - Peripheral Blood; Post-treatment, Blood Derived Liquid Biopsy, Blood Derived Normal, Body Fluid, Bone Marrow Normal, Buccal Cell Normal, Cell, Cell Line Derived Xenograft Tissue, Cell Lines, Control Analyte, DNA, EBV Immortalized Normal, Expanded Next Generation Cancer Model, FFPE Recurrent, FFPE Scrolls, Fibroblasts from Bone Marrow Normal, GenomePlex (Rubicon) Amplified DNA, Granulocytes, Human Tumor Original Cells, In Situ Neoplasms, Lymphoid Normal, Metastatic, Mixed Adherent Suspension, Mononuclear Cells from Bone Marrow Normal, Neoplasms of Uncertain and Unknown Behavior, Next Generation Cancer Model, Next Generation Cancer Model Expanded Under Non-conforming Conditions, Not Allowed To Collect, Pleural Effusion, Post neo-adjuvant therapy, Primary Blood Derived Cancer - Bone Marrow, Primary Blood Derived Cancer - Peripheral Blood, Primary Tumor, Primary Xenograft Tissue, Recurrent Blood Derived Cancer - Bone Marrow, Recurrent Blood Derived Cancer - Peripheral Blood, Recurrent Tumor, Repli-G (Qiagen) DNA, Repli-G X (Qiagen) DNA, RNA, Saliva, Slides, Solid Tissue Normal, Tissue, Total RNA, Tumor, Tumor Adjacent Normal - Post Neo-adjuvant Therapy, Whole Animal, Whole Blood, Xenograft Tissue, Unknown, Not Reported",,FALSE,,,,HTAN, +Biospecimen Species,The species from which the biospecimen originates,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,MC2,list like Biospecimen Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0, Biospecimen Age at Collection,Age at the time the biospecimen was collected. Please provide the unit in field Biospecimen Age at Collection Unit.,,,FALSE,,,,HTAN,num Biospecimen Age at Collection Unit,Unit associated with age at the time the biospecimen was collected.,,,FALSE,,,,HTAN,str @@ -11,7 +11,7 @@ Biospecimen Disease Type,"The type of tumor associated with the specimen. Multip Biospecimen Tumor Subtype,"The subtype related to the scientific determination and investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms of tissue growth resulting from uncontrolled cell proliferation.",,,FALSE,,,,MC2/STE,str Biospecimen Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, Biospecimen Composition,"The text term used to describe the type(s) of tissue contained in the biospecimen. Multiple values permitted, comma separated.","Additional Primary, Atypia or hyperplasia, Local recurrence, Metastatic, Normal, Normal adjacent, Normal distant, NOS, Not applicable, Not reported, Premalignant, Premalignant - in situ, Primary, Recurrent, Tissue, Tumor post-adjuvant therapy, Tumor post-neoadjuvant therapy, Tumor post-therapy, Tumor specimen from de novo untreated malignancy of the bladder, Unknown, Xenograft",,FALSE,,,,CDS Imaging v1.0,list like -Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,FALSE,,,,CDS Imaging v1.0/multiplex microscopy, +Biospecimen Tumor Status,Normal or Tumor Sample Pathology Indicator,"Tumor, Normal, Not Reported, Peritumoral, Unknown",,TRUE,,,,CDS Imaging v1.0/multiplex microscopy, Biospecimen Preservation Method,Text term that represents the method used to preserve the sample.,"Cryopreserved, Cryopreservation in liquid nitrogen - dead tissue, Cryopreservation in dry ice - dead tissue, Cryopreservation in liquid nitrogen - live cells, Formalin fixed paraffin embedded - FFPE, Formalin fixed-unbuffered, Formalin fixed-buffered, Fresh, Fresh dissociated and single cell sorted into plates in NP40 buffer, OCT, Snap Frozen, Frozen, Negative 80 Deg C, Liquid Nitrogen, Fresh dissociated, Fresh dissociated and single cell sorted, Fresh dissociated and single cell sorted into plates, Methacarn fixed paraffin embedded - MFPE, unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, Biospecimen Anatomic Site,Text term that represents the name of the primary disease site of the submitted tumor sample.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0/non-DICOM pathology, Biospecimen Site of Resection or Biopsy,The text term used to describe the anatomic site of the resection or biopsy of the patient's malignant disease.,"Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,HTAN, @@ -35,6 +35,7 @@ Biospecimen Primary Site,Primary site in the body associated with the primary di Biospecimen Primary Diagnosis,"Text term used to describe the histologic diagnosis relevant to the model system, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,FALSE,,,,CDS Metadata v1.3.3/Diagnosis, Biospecimen Treatment Response,Text term that describes the treatment response of a model or patient from which this specimen was derived.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, Biospecimen Incidence Type,Text term describing a change in disease status associated with the collection of this specimen. ,"Primary, Progression, Recurrence, Metastasis, Remission, No Disease",,FALSE,,,,CDS v5.0.4/Diagnosis, +Biospecimen Treatment Type,Text term that describes the kind of treatment administered.,"3-Dimensional Conformal Radiation Therapy, Allogeneic Hematopoietic Stem Cell Transplantation, Autologous Stem Cell Transplantation, Brachytherapy, Cellular Therapy, Chemotherapy, Concurrent Chemoradiation, Conventional Radiotherapy, Electron Beam Radiation Therapy, External Beam Radiation Therapy, High-Dose Rate Brachytherapy, Hormone Therapy, Immunotherapy, Intensity-Modulated Radiation Therapy, Low-Dose Rate Brachytherapy, Not Reported, Organ Transplantation, Palliative Care, Pharmacotherapy, Photon Beam Radiation Therapy, Proton Beam Radiation Therapy, Radiation Therapy, Radiofrequency Ablation, Radiopharmaceutical, Stem Cell Transplant, Stereotactic Body Radiation Therapy, Stereotactic Radiosurgery, Surgical Procedure, Targeted Molecular Therapy, Unknown",,FALSE,,,,CDS v5.0.4/Treatment,list like Collection,The set of metadata entries associated with a Study. A collection defines which resources should be grouped for sharing and reuse.,,"Component, Collection_id, GrantView Key, Study Key, PublicationView Key, DatasetView Key, ToolView Key, EducationalResource Key, Biospecimen Table Id, Model Table Id, Individual Table Id, Imaging Channel Table Id, GeoMx ROI Table Id",FALSE,,,,, Collection_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Biospecimen Table Id,The Synapse Id corresponding to a Biospecimen metadata table associated with the Dataset(s),,,FALSE,,,,,"regex search ^syn\d{7,8}$" @@ -50,19 +51,42 @@ Consortium Description,Description of research consortium,,,TRUE,,,,, Consortium Funding Agency,Funding agency of research consortium ,NIH,,TRUE,,,,, Website,Website of research consortium,,,TRUE,,,,,url Consortium_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +community,The Sage Bionetworks project or initiative with which the dataset is associated.,,,FALSE,,,,Synapse Data Catalog,str +description,A text description of the dataset. Can be identifical to Dataset Description.,,,FALSE,,,,Synapse Data Catalog,str +contributor,"Organization(s), insitution(s), or person(s) that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name.",,,FALSE,,,,Synapse Data Catalog,list like +keywords,Keywords associated with the dataset. Can be identical to Publication Keywords.,,,TRUE,,,,Synapse Data Catalog,list like +individuals,"The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples",,,FALSE,,,,Synapse Data Catalog,int +link,"The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.",,,FALSE,,,,Synapse Data Catalog,url +croissant,A Synapse url where the croissant file associated with this dataset is stored.,,,FALSE,,,,Synapse Data Catalog,url +DataCatalog,The manifest used to describe datasets for the Synapse Data Catalog.,,"Component, DataCatalog_id, community, description, contributors, keywords, individuals, link, croissant",FALSE,,,Study,Synapse Data Catalog, +DataCatalog_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,MC2,unique +accessType,Access type for the dataset.,"Anonymous, Open, Controlled, Private",,FALSE,,,,schema.org/dataset,str +alternateName,An altername name that can be used for search and discovery improvement.,,,FALSE,,,,schema.org/dataset,str +conditionsOfAccess,"Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown.",,,FALSE,,,,schema.org/dataset,str +countryOfOrigin,Origin of individuals from which data were generated. Omit if not applicable/unknown.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,schema.org/dataset,list like +creator,Organization or person that is creator of the dataset. Default is the PI of the project and/or the user who created all files in the dataset.,,,TRUE,,,,schema.org/dataset,str +dataUseModifiers,"List of data use ontology (DUO) terms that are true for dataset, which describes the allowable scope and terms for data use. Omit property if not applicable/unknown.","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,schema.org/dataset,list like +datePublished,Date data were published/available on Synapse.,,,FALSE,,,,schema.org/dataset,int +funder,The entity(ies) responsible for funding the data contributors.,NIH,,FALSE,,,,schema.org/dataset,list like +includedInDataCatalog,Link(s) to known data catalog(s) the dataset is included in.,,,FALSE,,,,schema.org/dataset,str +license,"The terms and conditions underwhich the data are allowed to be accessed and used. Unless information for license is clear, this should default to UNKNOWN.","CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,schema.org/dataset,str +measurementTechnique,Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia).,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,FALSE,,,,schema.org/dataset,list like +species,"Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,schema.org/dataset,list like +subject,Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme.,,,FALSE,,,,schema.org/dataset,list like +title,The name of the dataset.,,,TRUE,,,,schema.org/dataset,str Dataset Name,Name of the dataset,,,TRUE,,,,, Dataset Alias,"Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.",,,TRUE,,,,,unique Dataset Description,Description of the dataset.,,,FALSE,,,,, Dataset Design,The overall design of the dataset.,,,FALSE,,,,, Dataset Url,The url of where the dataset is stored.,,,TRUE,,,,,url Dataset Doi,The Digital Object Identifier (DOI) associated with the dataset.,,,TRUE,,,,MC2,url -Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +Dataset Assay,"The assay the dataset is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like +Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DCC, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, GrantView Key, Study Key, PublicationView Key, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset Doi, Dataset File Formats, Data Use Codes",FALSE,,,Study,, -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, GrantView Key, Study Key, DatasetView Key, PublicationView Key, ToolView Key, Resource Title, Resource Link, Resource Doi, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",FALSE,,,Grant View,, @@ -79,7 +103,7 @@ Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like::regex search [a-z]{2} Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,MC2/grant,list like Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str @@ -93,20 +117,20 @@ EducationalResource_id,A unique primary key that enables record updates using sc File Description,Description of the file.,,,FALSE,,,,,str File Design,The overall design of the dataset or file.,,,FALSE,,,,,str File Url,The url of where the file is stored.,,,TRUE,,,,,url -File Assay,The assay the file is representative of.,"10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,, +File Assay,"The assay(s) the file is representative of. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like File Level,The processing level the file can be mapped to. ,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,TRUE,,,,HTAN, -File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +File Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like File Tumor Type,"The tumor type(s), if applicable, of the data collected. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like File Tissue,"Tissue type(s) associated with the file. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like File View,The denormalized manifest for file submission.,,"Component, FileView_id, Biospecimen Key, Study Key, DatasetView Key, Filename, File Alias, File Description, File Design, File Level, File Assay, File Species, File Tumor Type, File Tissue, File Anatomic Site, File Url, File Format, Data Use Codes, File Longitudinal Group, File Longitudinal Event Type, File Longitudinal Sequence Identifier, File Longitudinal Time Elapsed Unit, File Longitudinal Sequential Time Elapsed, File Longitudinal Total Time Elapsed",FALSE,,,Study,, FileView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique File Longitudinal Group,A label that can be used to identify groups of files from the same longitudinal/time-resolved experiment,,,FALSE,,,,,str -File Longitudinal Event Type,"The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)","Enrollment, Baseline",,FALSE,,,,,str +File Longitudinal Event Type,The type of event to which File Longitudinal Total Time Elapsed is related,"Enrollment, Baseline",,FALSE,,,,,str File Longitudinal Sequence Identifier,"The order in which this file was collected with respect to the longitudinal experiment (e.g., 1, 2, etc.). Integer.",,,FALSE,,,,,int File Longitudinal Time Elapsed Unit,The unit of time associated with Sequential and Total Time Elapsed attributes.,,,FALSE,,,,,str File Longitudinal Sequential Time Elapsed,The time elapsed between collecting the current and previous files in this longitudinal group. ,,,FALSE,,,,,num File Longitudinal Total Time Elapsed,The total time elapsed between the first and current files contained this longitudinal group. ,,,FALSE,,,,,num -File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, +File Format,The format of the file described by this entry.,"AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DCC, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,TRUE,,,,, File Alias,"A string identifier associated with the file. Must be unique. Can be the repository accesssion number (e.g., Synapse ID, GEO identifier such as GSE12345). No Greek Letters or DOIs.",,,TRUE,,,,,unique File Anatomic Site,The anatomic site associated with the data contained in this file.,"Accessory sinus; NOS, Abdominal esophagus, Ascending colon, Appendix, Aortic body and other paraganglia, Anterior wall of nasopharynx, Anterior wall of bladder, Anterior surface of epiglottis, Anterior mediastinum, Anterior floor of mouth, Anterior 2/3 of tongue; NOS, Anal canal, Ampulla of Vater, Gum; NOS, Greater curvature of stomach; NOS, Glottis, Glans penis, Gastrointestinal tract; NOS, Bone; NOS, Bone marrow, Body of stomach, Body of penis, Body of pancreas, Blood, Bladder neck, Biliary tract; NOS, Base of tongue; NOS, Conjunctiva, Commissure of lip, Colon; NOS, Cloacogenic zone, Clitoris, Ciliary body, Choroid, Cheek mucosa, Cervix uteri, Cervical esophagus, Cerebrum, Cerebral meninges, Cerebellum; NOS, Cecum, Abdomen; NOS, Acoustic nerve, Adrenal gland; NOS, Anus; NOS, Autonomic nervous system; NOS, Dorsal surface of tongue; NOS, Dome of bladder, Descending colon, Descended testis, Craniopharyngeal duct, Cranial nerve; NOS, Cortex of adrenal gland, Corpus uteri, Cornea; NOS, Connective; subcutaneous and other soft tissues; NOS, Connective; subcutaneous and other soft tissues of upper limb and shoulder, Connective; subcutaneous and other soft tissues of trunk; NOS, Connective; subcutaneous and other soft tissues of thorax, Connective; subcutaneous and other soft tissues of pelvis, Connective; subcutaneous and other soft tissues of lower limb and hip, Connective; subcutaneous and other soft tissues of head; face; and neck, Connective; subcutaneous and other soft tissues of abdomen, Bones of skull and face and associated joints, Cauda equina, Carotid body, Cardia; NOS, Broad ligament, Breast; NOS, Branchial cleft, Brain; NOS, Brain stem, Border of tongue, Ethmoid sinus, Esophagus; NOS, Epididymis, Endometrium, Endocrine gland; NOS, Endocervix, Duodenum, Eyelid, Eye; NOS, Extrahepatic bile duct, External upper lip, External lower lip, External lip; NOS, External ear, Exocervix, Fundus uteri, Fundus of stomach, Frontal sinus, Frontal lobe, Floor of mouth; NOS, Fallopian tube, Lymph node; NOS, Lung; NOS, Lower-outer quadrant of breast, Lower-inner quadrant of breast, Lower third of esophagus, Lower lobe; lung, Lower limb; NOS, Lower gum, Long bones of upper limb; scapula and associated joints, Long bones of lower limb and associated joints, Liver, Lip; NOS, Lingual tonsil, Lesser curvature of stomach; NOS, Lateral wall of oropharynx, Lateral wall of nasopharynx, Lateral wall of bladder, Lateral floor of mouth, Larynx; NOS, Laryngeal cartilage, Axillary tail of breast, Gallbladder, Gastric antrum, Isthmus uteri, Islets of Langerhans, Intrathoracic lymph nodes, Intrahepatic bile duct, Intra-abdominal lymph nodes, Intestinal tract; NOS, Ill-defined sites within respiratory system, Ileum, Hypopharynx; NOS, Hypopharyngeal aspect of aryepiglottic fold, Hepatic flexure of colon, Hematopoietic system; NOS, Heart, Head; face or neck; NOS, Head of pancreas, Hard palate, Myometrium, Mucosa of upper lip, Mucosa of lower lip, Mucosa of lip; NOS, Mouth; NOS, Middle third of esophagus, Middle lobe; lung, Middle ear, Meninges; NOS, Medulla of adrenal gland, Mediastinum; NOS, Meckel diverticulum, Maxillary sinus, Mandible, Major salivary gland; NOS, Main bronchus, Oropharynx; NOS, Orbit; NOS, Optic nerve, Olfactory nerve, Occipital lobe, Nipple, Nervous system; NOS, Nasal cavity, Penis; NOS, Pelvis; NOS, Pelvic lymph nodes, Pelvic bones; sacrum; coccyx and associated joints, Parotid gland, Parietal lobe, Paraurethral gland, Parathyroid gland, Parametrium, Pancreatic duct, Pancreas; NOS, Palate; NOS, Ovary, Lacrimal gland, Labium minus, Labium majus, Kidney; NOS, Jejunum, Lymph nodes of multiple regions, Lymph nodes of inguinal region or leg, Lymph nodes of axilla or arm, Other specified parts of pancreas, Other specified parts of male genital organs, Other specified parts of female genital organs, Other ill-defined sites, Laryngeal commissure, Overlapping lesions of oropharynx, Overlapping lesion of vulva, Overlapping lesion of urinary organs, Overlapping lesion of tonsil, Overlapping lesion of tongue, Overlapping lesion of stomach, Overlapping lesion of small intestine, Overlapping lesion of skin, Overlapping lesion of retroperitoneum and peritoneum, Overlapping lesion of respiratory system and intrathoracic organs, Overlapping lesion of penis, Overlapping lesion of pancreas, Overlapping lesion of palate, Overlapping lesion of other and unspecified parts of mouth, Upper respiratory tract; NOS, Upper lobe; lung, Upper limb; NOS, Upper Gum, Unknown primary site, Undescended testis, Trigone of bladder, Transverse colon, Trachea, Tonsillar pillar, Tonsillar fossa, Tonsil; NOS, Tongue; NOS, Thyroid gland, Thymus, Thorax; NOS, Thoracic esophagus, Testis; NOS, Temporal lobe, Tail of pancreas, Supraglottis, Superior wall of nasopharynx, Submandibular gland, Lymph nodes of head; face and neck, Bladder; NOS, Central portion of breast, Female genital tract; NOS, Male genital organs; NOS, Nasopharynx; NOS, Placenta, Pituitary gland, Pineal gland, Pharynx; NOS, Peritoneum; NOS, Bone of limb; NOS, Ventricle; NOS, Specified parts of peritoneum, Ventral surface of tongue; NOS, Overlapping lesion of nasopharynx, Overlapping lesion of male genital organs, Overlapping lesion of major salivary glands, Overlapping lesion of lung, Overlapping lesion of lip; oral cavity and pharynx, Overlapping lesion of lip, Overlapping lesion of larynx, Overlapping lesion of ill-defined sites, Overlapping lesion of hypopharynx, Overlapping lesion of floor of mouth, Overlapping lesion of female genital organs, Overlapping lesion of esophagus, Overlapping lesion of endocrine glands and related structures, Overlapping lesion of digestive system, Soft palate; NOS, Small intestine; NOS, Skin; NOS, Skin of upper limb and shoulder, Skin of trunk, Skin of scalp and neck, Skin of other and unspecified parts of face, Skin of lower limb and hip, Skin of lip; NOS, Sigmoid colon, Scrotum; NOS, Round ligament, Retroperitoneum, Retromolar area, Sublingual gland, Subglottis, Stomach; NOS, Splenic flexure of colon, Spleen, Spinal meninges, Spinal cord, Sphenoid sinus, Spermatic cord, Short bones of lower limb and associated joints, Not Reported, Unknown, Waldeyer ring, Vulva; NOS, Vestibule of mouth, Vertebral column, Vallecula, Vagina; NOS, Uvula, Uterus; NOS, Uterine adnexa, Urinary system; NOS, Urethra, Ureteric orifice, Ureter, Urachus, Upper-outer quadrant of breast, Upper-inner quadrant of breast, Upper third of esophagus, Short bones of upper limb and associated joints, Rib; sternum; clavicle and associated joints, Peripheral nerves and autonomic nervous system of upper limb and shoulder, Peripheral nerves and autonomic nervous system of trunk; NOS, Peripheral nerves and autonomic nervous system of thorax, Peripheral nerves and autonomic nervous system of pelvis, Peripheral nerves and autonomic nervous system of lower limb and hip, Peripheral nerves and autonomic nervous system of head; face; and neck, Peripheral nerves and autonomic nervous system of abdomen, Retina, Reticuloendothelial system; NOS, Renal pelvis, Rectum; NOS, Rectosigmoid junction, Pyriform sinus, Pylorus, Prostate gland, Prepuce, Posterior wall of oropharynx, Posterior wall of nasopharynx, Overlapping lesion of corpus uteri, Overlapping lesion of connective; subcutaneous and other soft tissues, Overlapping lesion of colon, Overlapping lesion of cervix uteri, Overlapping lesion of breast, Overlapping lesion of brain, Overlapping lesion of bladder, Overlapping lesion of biliary tract, Overlapping lesion of accessory sinuses, Overlapping lesion of rectum; anus and anal canal, Overlapping lesion of peripheral nerves and autonomic nervous system, Overlapping lesion of heart; mediastinum and pleura, Overlapping lesion of eye and adnexa, Overlapping lesion of brain and central nervous system, Overlapping lesion of bones; joints and articular cartilage of limbs, Overlapping lesion of bones; joints and articular cartilage, Posterior wall of hypopharynx, Posterior wall of bladder, Posterior mediastinum, Postcricoid region, Pleura; NOS",,TRUE,,,,CDS/Image v5.0.4,list like NanoString GeoMx Auxiliary Files,Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.,,"Component, NanoStringGeoMxAuxiliaryFiles_id, Synapse ID of GeoMx DSP ROI Segment Annotation File, Synapse ID of GeoMx DSP PKC File, Synapse ID of GeoMx Lab Worksheet File, Synapse ID of GeoMx DSP Config File",FALSE,,,,MC2/STE, @@ -115,18 +139,18 @@ Synapse ID of GeoMx Lab Worksheet File,Synapse ID(s) of Lab Worksheet Files outp Synapse ID of GeoMx DSP PKC File,The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.,,,FALSE,,,,HTAN,list like::regex match syn\d+ Synapse ID of GeoMx DSP ROI Segment Annotation File,Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.,,,FALSE,,,,HTAN,list like::regex match syn\d+ Synapse ID of GeoMx DSP Config File,Synapse ID of config.ini file generated by the GeoMx DSP workflow.,,,FALSE,,,,MC2/STE,list like::regex match syn\d+ -NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Imaging,Images acquired by the GeoMx instrument,,"Component, NanoStringGeoMxDSPImaging_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx Imaging Channel Names, GeoMx Imaging AOI Coordinates, ImagingChannel Key, Image Assay Type, Image Protocol Link, Image Platform Model, Image Platform Manufacturer, Image Software, Image Objective, Image Nominal Magnification, Image Lense Aperture, Image Working Distance, Image Working Distance Unit, Image Immersion Type, Image Pyramidal, Image Z stack, Image Timeseries, Image FOV Index, Image FOV Size X, Image FOV Size X Unit, Image FOV Size Y, Image FOV Size Y Unit, Image Frame Averaging, Image Identifier, Image Dimension Order, Image Physical Size X, Image Physical Size X Unit, Image Physical Size Y, Image Physical Size Y Unit, Image Physical Size Z, Image Physical Size Z Unit, Image Pixels BigEndian, Image Plane Count, Image Channel Size, Image Number of Timepoints, Image X Pixels, Image Y Pixels, Image Z Pixels, Image Pixel Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPImaging_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx Imaging Channel Names,Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,HTAN,list like GeoMx Imaging AOI Coordinates,Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.,,,FALSE,,,,MC2/STE,list like -NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, +NanoString GeoMx DSP Level 1,Raw sequencing files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel1_id, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, Filename, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,"File View, NanoString GeoMX ROI Segment Annotation",MC2/STE, NanoStringGeoMxDSPLevel1_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx DSP Assay Type,The assay type which was used for the GeoMx DSP pipeline.,"RNA nCounter, Protein nCounter, Protein NGS, RNA NGS",,FALSE,,,,HTAN, -NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 2,Processed count conversion (DCC/RCC) files from GeoMX experiments,,"Component, NanoStringGeoMxDSPLevel2_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxAuxiliaryFiles Key, NanoStringGeoMXROISegmentAnnotation Key, GeoMx DSP Assay Type, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel2_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, +NanoString GeoMx DSP Level 3,Files contain processed count data from the NanoString GeoMx DSP Pipeline.,,"Component, NanoStringGeoMxDSPLevel3_id, Filename, NanoStringGeoMxDSPLevel1 Key, NanoStringGeoMxDSPLevel2 Key, NanoStringGeoMxAuxiliaryFiles Key, NGS Unique Probe Count, NGS Unique Target Count, NGS Matrix Type, Software and Version, Workflow Type, Workflow Parameter Description, Workflow Link",FALSE,,,"File View, NanoString GeoMx Auxiliary Files",HTAN, NanoStringGeoMxDSPLevel3_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique -NanoString GeoMX ROI Segment Annotation,GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ,,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw reads, NGS Stitched reads, NGS Aligned reads, NGS Deduplicated reads, NGS Trimmed reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", +NanoString GeoMX ROI Segment Annotation,"GeoMx ROI and Segment Metadata Attributes. The assayed biospecimen should be reported one per row with the associated ROI and AOI coordinates. ",,"Component, NanoStringGeoMXROISegmentAnnotation_id, Biospecimen Key, GeoMx Scan name, GeoMx ROI Name, GeoMx AOI Name, GeoMx Tags, GeoMx ROI X Coordinate, GeoMx ROI Y Coordinate, GeoMx AOI X Coordinate, GeoMx AOI Y Coordinate, GeoMx QC status, GeoMx Scan Height, GeoMx Scan Width, GeoMx Scan Offset X, GeoMx Scan Offset Y, GeoMx Binding Density, GeoMx Positive norm factor, GeoMx Surface area, GeoMx Nuclei count, GeoMx Tissue Stain, GeoMx Slide name, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS Sequencing Coverage, NGS MapQ30, GeoMx Negative count mean, GeoMx No Template Control count, GeoMx Excluded Outlier Probes, GeoMx Limit of Quantification",FALSE,,,Biospecimen,"MC2/STE, HTAN", NanoStringGeoMXROISegmentAnnotation_id,"Unique row identifier, used as a primary key for record updates",,,TRUE,,,,MC2,unique GeoMx Scan name,GeoMx Scan name (as appears in Segment Summary),,,TRUE,,,,HTAN,str GeoMx ROI Name,Name of Region of Interest corresponding to file. Multiple names should be comma-separated,,,TRUE,,,,HTAN,list like @@ -152,14 +176,16 @@ GeoMx No Template Control count,The number of reads detected by the GeoMx probe GeoMx Excluded Outlier Probes,The list of probes excluded from analysis.,,,FALSE,,,,STE,num GeoMx Limit of Quantification,The calculated limit of quantification associated with the segment.,,,FALSE,,,,STE,num GeoMx Sequencing Saturation,"The fraction of reads originating from an already-observed UMI. This is a function of library complexity and sequencing depth. More specifically, this is the fraction of confidently mapped, valid spot-barcode, valid UMI reads that had a non-unique (spot-barcode, UMI, gene).",,,FALSE,,,,HTAN,num +GeoMx Tags,"The basename(s) or unique identifier(s) for FASTQ, RCC, or DCC file(s) associated with this ROI.",,,FALSE,,,,MC2/STE,str +GeoMx Tissue Stain,"Text description of the stain, fluorescent reporter, or channel used to select the boundaries of the ROI.",,,FALSE,,,,MC2/STE,str Grant Name,Name of the grant,,,TRUE,,,,, Grant Number,"Number of the grant (i.e. ""CA------"" format)",,,TRUE,,,,,regex search ^CA\d{6}$ Grant Abstract,Abstract for the grant,,,TRUE,,,,, Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, -Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, +Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name, Grant Start Date, Grant End Date, NIH RePORTER Link, Duration of Funding, Embargo End Date, Grant Synapse Team, Grant Synapse Project",FALSE,,,,, Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Albert Einstein College of Medicine, Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beckman Research Institute of City of Hope, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Clemson University, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, Northeastern University, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Purdue University, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of Arkansas at Fayetteville, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"AECM, ASU, AU, BCM, BIDMC, BMC, BRI, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Clemson, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NEU, NU, NYU, OHSU, PNNL, Pitt, Purdue, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UARK, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique @@ -169,6 +195,7 @@ Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,,int Embargo End Date,Date at which an embargo on related resources had lifted,,,FALSE,,,,,date +Grant End Date,The end date of the grant YYYY-MM-DD format,,,TRUE,,,,,date Imaging Channel,Channel-level Metadata Attributes,,"Component, ImagingChannel_id, Study Key, Channel Identifier, Channel Name, Channel Passed QC, Channel Cycle Number, Channel Sub-cycle Number, Channel Antibody Role, Channel Target Name, Channel Antibody Name, Channel Resource ID, Channel Fluorophore, Channel Antibody Clone, Channel Antibody Lot, Channel Antibody Vendor, Channel Antibody Catalog Number, Channel Excitation Wavelength, Channel Emission Wavelength, Channel Excitation Bandwidth, Channel Emission Bandwidth, Channel Metal Symbol, Channel Metal Isotope, Channel Oligo Barcode Upper Strand, Channel Oligo Barcode Lower Strand, Channel Probe Dilution Ratio, Channel Probe Concentration",FALSE,,,,HTAN, ImagingChannel_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, Channel Identifier,This must match the corresponding field in the OME-XML / TIFF header. (eg 'Channel:0:1'),,,TRUE,,,,HTAN, @@ -252,11 +279,11 @@ Imaging Level 4,Derived imaging data or object by feature array,,"Component, Ima ImagingLevel4_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,MC2, Image Number of Features,The number of features (eg channels) described,,,TRUE,,,,HTAN,num Image Summary Statistic,Function used to summarize object/feature intensity,"Mean, Median, Not Specified",,TRUE,,,,HTAN, -Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status",FALSE,,,Study,, +Individual,Information about models and individuals from which biospecimen(s) were collected.,,"Component, Individual_id, Study Key, Individual dbGaP Subject Id, Individual Sex, Individual Gender, Individual Age at Diagnosis, Individual Disease Type, Individual Primary Diagnosis, Individual Primary Site, Individual Primary Tumor Stage, Individual Site of Origin, Individual Tumor Subtype, Individual Tumor Grade, Individual Tumor Lymph Node Stage, Individual Known Metastasis Sites, Individual Metastasis Stage, Individual Treatment Type, Individual Therapeutic Agent, Individual Days to Treatment, Individual Treatment Response, Individual Days to Last Followup, Individual Recurrence Status, Individual Days To Recurrence, Individual Days to Last Known Disease Status, Individual Last Known Disease Status, Individual Vital Status",FALSE,,,Study,, Individual_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Individual Known Metastasis Sites,The text term(s) used to describe the anatomic site(s) of metastasis associated with the patient's malignant disease.,"4th ventricle, Abdomen, Abdominal mass, Abdominal Wall, Acetabulum, Adenoid, Adipose, Adrenal, Adrenal mass, Alveolar Ridge, Amniotic Fluid, Ampulla Of Vater, Anal Sphincter, Ankle, Anorectum, Antecubital Fossa, Antrum, Anus, Aorta, Aortic Body, Appendix, Aqueous Fluid, Arm, Artery, Ascending Colon, Ascending Colon Hepatic Flexure, Auditory Canal, Autonomic Nervous System, Axilla, Back, Bilateral, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone marrow, Bone Marrow, Bone Marrow metastasis, Bowel, Brain, Brain stem, Brain Stem, Breast, Broad Ligament, Bronchiole, Bronchus, Brow, Buccal Cavity, Buccal Mucosa, Buttock, Calf, Capillary, Cardia, Carina, Carotid Artery, Carotid Body, Cartilage, Cecum, Cell-Line, Central Nervous System, Cerebellum, Cerebral Cortex, Cerebrospinal Fluid, Cerebrum, Cervical node, Cervical Spine, Cervix, Chest, Chest Wall, Chin, Clavicle, Clitoris, Colon, Colon - Mucosa Only, Common Duct, Conjunctiva, Connective Tissue, Dermal, Descending Colon, Diaphragm, Distal femur, Duodenum, Ear, Ear, Ear Canal, Effusion, Elbow, Endocrine Gland, Epididymis, Epidural Space, Esophageal; Distal, Esophageal; Mid, Esophageal; Proximal, Esophagogastric Junction, Esophagus, Esophagus - Mucosa Only, Eye, Fallopian Tube, Femoral Artery, Femoral Vein, Femur, Fibroblasts, Fibula, Finger, Floor Of Mouth, Fluid, Foot, Forearm, Forehead, Foreskin, Frontal Cortex, Frontal Lobe, Fundus Of Stomach, Gallbladder, Ganglia, Gastroesophageal Junction, Gastrointestinal Tract, Glottis, Groin, Gum, Hand, Hard Palate, Head & Neck, Head - Face Or Neck, Heart, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Vein, Hip, Hippocampus, Humerus, Hypopharynx, Ileum, Ilium, Index Finger, Ischium, Islet Cells, Jaw, Jejunum, Joint, Kidney, Knee, L. Distal Femur, L. Femur, L. Kidney, L. Occipital mass, L. Proximal Tibia, Lacrimal Gland, Large Bowel, Laryngopharynx, Larynx, Left Bone marrow, Left thigh, Leg, Leptomeninges, Ligament, Lip, Liver, Liver metastasis, Lumbar Spine, Lung, Lung mass, Lung met, Lung metastasis, Lung/pleura, Lymph Node, Lymph Node met, Lymph Node(s) Axilla, Lymph Node(s) Cervical, Lymph Node(s) Distant, Lymph Node(s) Epitrochlear, Lymph Node(s) Femoral, Lymph Node(s) Hilar, Lymph Node(s) Iliac-Common, Lymph Node(s) Iliac-External, Lymph Node(s) Inguinal, Lymph Node(s) Internal Mammary, Lymph Node(s) Mammary, Lymph Node(s) Mesenteric, Lymph Node(s) Occipital, Lymph Node(s) Paraaortic, Lymph Node(s) Parotid, Lymph Node(s) Pelvic, Lymph Node(s) Popliteal, Lymph Node(s) Regional, Lymph Node(s) Retroperitoneal, Lymph Node(s) Scalene, Lymph Node(s) Splenic, Lymph Node(s) Subclavicular, Lymph Node(s) Submandibular, Lymph Node(s) Supraclavicular, Lymph Nodes(s) Mediastinal, Mandible, Maxilla, Mediastinal Soft Tissue, Mediastinum, Mesentery, Mesothelium, Middle Finger, Mitochondria, Muscle, Nails, Nasal Cavity, Nasal Soft Tissue, Nasopharynx, Neck, Nerve, Nerve(s) Cranial, Not Allowed To Collect, not reported, Not Reported, Not specified in data, Occipital Cortex, Ocular Orbits, Omentum, Oral Cavity, Oral Cavity - Mucosa Only, Orbit, Oropharynx, Os frontalis, Other, Ovary, Palate, Pancreas, Paracaval Lymph Node metastasis, Paranasal Sinuses, Paraspinal Ganglion, Paraspinal mass, Paratesticular, Parathyroid, Parotid Gland, Patella, Pelvis, Penis, Pericardium, Perineum, Periorbital Soft Tissue, Peripheral blood, Peritoneal Cavity, Peritoneum, Pharynx, Pineal, Pineal Gland, Pituitary Gland, Placenta, Pleura, Pleural effusion met, Popliteal Fossa, post mortem blood, post mortem liver, post mortem liver tumor, Posterior mediastil mass (mediastinum), Prostate, Pylorus, R. Breast metastasis, R. Buttock, R. Distal Femur, R. femur/rib/verebra, R. Humerus, R. Kidney, R. Neck mass, R. Parietal Lobe, R. Proximal Ulna, R. Sylvian Fissure, Rectosigmoid Junction, Rectum, Retina, Retro-Orbital Region, Retroperitoneal mass, Retroperitoneum, Rib, Right Bone marrow, Ring Finger, Round Ligament, Sacrum, Salivary Gland, Scalp, Scapula, Sciatic Nerve, Scrotum, Seminal Vesicle, Shoulder, Sigmoid Colon, Sinus, Sinus(es), Skeletal Muscle, Skin, Skull, Small Bowel, Small Bowel - Mucosa Only, Small Finger, Soft Tissue, Spinal Column, Spinal Cord, Spleen, Splenic Flexure, Sternum, Stomach, Stomach - Mucosa Only, Subcutaneous Tissue, Subglottis, Sublingual Gland, Submandibular Gland, Supraglottis, Synovium, Temporal Cortex, Tendon, Testis, Thigh, Thoracic Spine, Thorax, Throat, Thumb, Thymus, Thyroid, Tibia, Tongue, Tonsil, Tonsil (Pharyngeal), Trachea / Major Bronchi, Transverse Colon, Trunk, tumor, Umbilical Cord, Unknowm, Unknown, Ureter, Urethra, Urinary Tract, Uterus, Uvula, Vagina, Vas Deferens, Vein, Venous, Ventricular mass, Vertebra, Vulva, White Blood Cells, Wrist",,FALSE,,,,CDS Imaging v1.0,list like Individual Last Known Disease Status,Text term that describes the last known status of an individual.,"Biochemical evidence of disease without structural correlate, Tumor Free, Unknown, With Tumor, Not Reported, Not Applicable, Not Allowed To Collect, Distant Metastasis, Localized Disease, Regional Disease, New Tumor Event",,FALSE,,,,CDS Imaging v1.0, -Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,CDS Imaging v1.0,str +Individual Sex,Biological sex associated with the specimen donor,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,CDS Imaging v1.0,str Individual Disease Type,"The type of tumor associated with the specimen. Multiple values permitted, comma separated.","Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,CDS Imaging v1.0, Individual Primary Diagnosis,"Text term used to describe the patient's histologic diagnosis, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).","Head and Neck Squamous Cell Carcinoma, Astroblastoma; Other; Other CNS Tumor; NOS Or NEC, Medulloblastoma; Hypercellular Lesion With Marked Atypia, Ependymoma; NOS; Posterior Fossa Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Neuroma; NOS, Precursor Cell Lymphoblastic Leukemia; NOS, Hypercellular Neuroepithelial Tumor With Some Features Of Glioma; Possibly High Grade, Acute Leukemia; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Papillary Glioneuronal Tumor, High-grade serous carcinoma, Myeloid Leukemia; NOS, Choriocarcinoma; NOS, Embryonal Carcinoma; NOS; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Giant Cell Tumor Of Bone; NOS, Adenocarcinoma; Intestinal Type, Not Specified In Data, Neoplasm; Uncertain Whether Benign Or Malignant; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ductal Carcinoma NOS, Renal Cell Carcinoma; NOS, B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1), Myelodysplastic Syndrome; NOS, Low Grade Fibromyxoid Sarcoma, Benign Cystic Nephroma, Glial Neoplasm, Papillary Adenocarcinoma; NOS, Telangiectatic Osteosarcoma, Ganglioglioma; NOS; Malignant Peripheral Nerve Sheath Tumor; NOS, Central Neurocytoma, Giant Cell Tumor Of Soft Parts; NOS, Giant Cell Tumor Of Bone; Malignant, Sertoli-Leydig Cell Tumor; Poorly Differentiated, Glioma; Malignant; Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Acute Megakaryoblastic Leukemia, Germinoma; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia; WHO Grade 1, Supratentorial Ependymoma; NOS, Myxoid Liposarcoma, Acute Lymphoblastic Leukemia, Combined Small Cell-Squamous Cell Carcinoma, High Grade Spindle Cell Sarcoma, Medulloblastoma; Group 3 Subtype (WHO Grade 4), Acute Monocytic Leukemia, Neoplasm; NOS, Retinoblastoma; Grade 3, Yolk Sac Tumor; NOS; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Myofibroblastic Tumor; NOS, Sex Cord-Gonadal Stromal Tumor; Mixed Forms, Adamantinomatous Craniopharyngioma, Mesoblastic Nephroma, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Astrocytoma; NOS; High-Grade Glioma; Infant-Type Hemispheric Glioma, Rhabdomyosarcoma; NOS, Mucinous Adenocarcinoma; Endocervical Type, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ganglioglioma; NOS; Glioneuronal And Neuronal Tumors, Dermoid Cyst, Adenocarcinoma Combined With Other Types Of Carcinoma, Precursor Cell Lymphoblastic Lymphoma; NOS, Posterior Fossa Ependymoma; CNS WHO Grade 2, Pituitary Adenoma; NOS, Neoplasm; Malignant; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Sex Cord-Gonadal Stromal Tumor; Incompletely Differentiated, High Grade Follicular Derived Thyroid Carcinoma, Desmoplastic Fibroma, Perineuroma, Diffuse Midline Glioma; H3K27M-Mutant; CNS WHO Grade 4, Ganglioglioma, Pancreatobiliary-Type Carcinoma, Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia, Hemangioblastoma, Colorectal Carcinoma, Acute Myelomonocytic Leukemia, Diffuse Midline Glioma; H3 K27-Altered, T-Lymphoblastic Lymphoma, Lymphangioma; NOS, Neoplasm; Benign, Papillary Intralymphatic Angioendothelioma, Ependymoma; NOS; Supratentorial Ependymoma; ZFTA Fusion-Positive, Unclassified Sarcoma With Round Cell Morphology, Glioma, Medulloblastoma; Classic (Biphasic) Histologic Type; Non-SHH/Non-WNT Molecular Group; CNS WHO Grade 4, Soft Tissue Sarcoma, Xanthogranuloma, Neoplasm; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Bronchio-Alveolar Carcinoma; Mucinous, Hepatocellular Carcinoma; Fibrolamellar, Pancreatic Neuroendocrine Tumor; Nonfunctioning, Myxopapillary Ependymoma, Chondrosarcoma; NOS, Favor Ganglioglioma, Papillary Tumor Of Pineal Region, Acute Myeloid Leukemia With Mutated NPM1, Epithelioid Hemangioendothelioma; NOS, Neuroblastoma; NOS, Chondroid Chordoma, Infiltrating Duct And Lobular Carcinoma, Mitotically Active Glial/ Glioneuronal Neoplasm, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, CPNET, Mycosis Fungoides; Langerhans Cell Histiocytosis; NOS, T-Lymphoblastic Leukemia, Medulloblastoma; NOS; Medulloblastoma; Non-WNT/Non-SHH, Clear Cell Meningioma; Meningioma; Other, Ameloblastic Carcinosarcoma, Dysembryoplastic Neuroepithelial Tumor; Glioneuronal And Neuronal Tumors, Meningothelial Meningioma, Epithelioid Cell Melanoma, Prostate Cancer, Paraganglioma; Malignant, Small Cell Sarcoma, Cystosarcoma Phyllodes; NOS, Seminoma; NOS, Yolk Sac Tumor; NOS, Intraductal Carcinoma NOS, Adenocarcinoma; Endocervical Type, Neurofibroma; NOS, Astroblastoma; Astroblastoma; MN1-Altered; High-Grade Glioma, Meningothelial Meningioma; Grade 1, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Unknown, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Sarcoma; Ewing Sarcoma, Glioma; Malignant; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Endometrioid Adenocarcinoma; NOS, Pancreas-Adenocarcinoma Ductal Type, Giant Cell Glioblastoma; Glioblastoma; IDH-Wildtype; High-Grade Glioma, Angiomyosarcoma, Carcinoid Tumor, Adenosquamous Carcinoma, Metastatic Neuroblastoma, Clear Cell Sarcoma Of Kidney, Infiltrating Duct Mixed With Other Types Of Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Embryonal Carcinoma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Neoplasm; Uncertain Whether Benign Or Malignant; CNS Germ Cell Tumors; CNS Germinoma, Astrocytoma; NOS; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Low Cumulative Sun Damage Melanoma, Supratentorial Ependymoma, Ossifying Fibromyxoid Tumor; NOS, Diffuse Large B-Cell Lymphoma; NOS, Adenocarcinoma With Neuroendocrine Differentiation, Atypical Meningioma, Pineoblastoma, Chronic Myeloid Leukemia; NOS, Atypical Choroid Plexus Papilloma, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFB, Pleomorphic Xanthoastrocytoma; NOS; High-Grade Glioma, Oxyphilic Adenocarcinoma, Favor Pilocytic Astrocytoma; CNS WHO Grade 1, Poorly Differentiated; Intermediate Mitotic-Karyorrhectic Index, Clear Cell Meningioma, Medulloblastoma; Classic Histologic Type; CNS WHO Grade 4, Appearances Consistent With Alveolar Soft Part Sarcoma, Dedifferentiated Liposarcoma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Tubular Adenocarcinoma, Rhabdomyosarcoma; Most Likely An Embryonal Carcinoma, Adenocarcinoma; NOS, Pleuropulmonary Blastoma, Basaloid Squamous Cell Carcinoma, Oligodendroglioma; Anaplastic; NOS, Pilocytic Astrocytoma; WHO Grade 1, Not Applicable, Abdominal Fibromatosis, Hamartoma, Neoplasm; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Choroid Plexus Papilloma; NOS; Choroid Plexus Tumors, Burkitt Lymphoma; NOS, Lymphoepithelial Carcinoma, Bronchiolo-Alveolar Carcinoma; Non-Mucinous, Kidney Clear Cell Renal Carcinoma, Pilocytic Astrocytoma; Low-Grade Glioma, Adenocarcinoma In Situ In Adenomatous Polyp, Neoplasm; Uncertain Whether Benign Or Malignant, Small Blue Cell Tumor. Favor Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma; NOS, Embryonal Tumor With Multi-Layered Rosettes, Chronic Eosinophilic Leukemia, Mixed Glioma, Basal Cell Adenocarcinoma, Olfactory Neuroblastoma, Transitional Cell Carcinoma; NOS, Clear Cell Sarcoma; NOS, Embryonal Rhabdomyosarcoma; High-Grade, Angiocentric Glioma, Diffuse Midline Glioma; H3 K27 Altered; WHO Grade 4, Osteoblastoma; NOS, Malignant Neoplasm With Rhabdomyoblastic Differentiation; High Grade, Myxopapillary Ependymoma (CNS WHO Grade II), Melanoma In Situ, Secretory Carcinoma, Pilocytic Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Rhabdomyosarcoma; Favor Alveolar Type, Adenocarcinoma; Metastatic NOS, Fibrosarcoma; NOS, Glioblastoma, Atypical Choroid Plexus Papilloma; Choroid Plexus Tumors, Ganglioneuroma; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Desmoplastic Melanoma; NOS, Choroid Plexus Carcinoma, Soft Tissue Tumor; Benign, Medulloblastoma; NOS, Glioblastoma; NOS; Medulloblastoma; NOS, Residual Astrocytoma, B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged, Extra Adrenal Paraganglioma, Mucoepidermoid Carcinoma, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Choroid Plexus Papilloma; NOS, Glioma; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, B-Lymphoblastic Leukemia/Lymphoma; NOS, Hodgkin Lymphoma; Nodular Sclerosis; NOS, Fibroma, Craniopharyngioma; NOS; Adamantinomatous Craniopharyngioma, T-Cell/Histiocyte Rich Large B-Cell Lymphoma, Astrocytoma; IDH-Mutant; CNS WHO Grade 4, Acute Erythroid Leukemia, Glioma; Histologically Low Grade, Mucous Adenocarcinoma, Glioma; Malignant; Ganglioglioma; Glioneuronal And Neuronal Tumors, Nodular Melanoma, Synovial Sarcoma; Biphasic, Neoplasm; Metastatic, Neoplasm; Uncertain Whether Benign Or Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Thymoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Ependymoma; Posterior Fossa Ependymoma; Group PFA, Desmoplastic/Nodular Medulloblastoma, Papillary Glioneuronal Tumor, Mixed Phenotype Acute Leukemia; T/Myeloid; NOS, Cholangiocarcinoma, Astroblastoma; MN1-Altered. Histologically High-Grade, Sertoli-Leydig Cell Tumor; Poorly Differentiated; With Heterologous Elements, Glioma; Malignant; High-Grade Glioma; Infant-Type Hemispheric Glioma, Juvenile Myelomonocytic Leukemia; NOS, Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry, Myeloid Leukemia With Myelodysplasia-Related Changes, Primary Cutaneous Follicle Center Lymphoma, Choroid Plexus Carcinoma; WHO Grade 3, Infiltrating Duct Carcinoma NOS, T Lymphoblastic Leukemia/Lymphoma, Glioma; Malignant; Other; Other CNS Tumor; NOS Or NEC, Mixed Germ Cell Tumor; Myelodysplastic Syndrome With Excess Blasts, Clear Cell Adenocarcinoma; NOS, Cutaneous T-Cell Lymphoma; NOS, Germinoma, Neoplasm; Malignant; ATRT; NOS Or NEC; Atypical Teratoid/Rhabdoid Tumor, Meningeal Melanocytoma, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Acute Promyelocytic Leukemia; T(15;17)(Q22;Q11-12), Alveolar Soft Part Sarcoma, Astrocytoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Mixed Epithelioid And Spindle Cell Melanoma, CNS Embryonal Tumor; NOS; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Malignant Tumor; Spindle Cell Type, Glioma; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Glioma; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Endometrioid Carcinoma; NOS, Lung Squamous Cell Carcinoma; NOS, Papillary Urothelial Carcinoma; Non-Invasive, Neuroblastoma; Undifferentiated Type, Periosteal Osteosarcoma, Mixed Phenotype Acute Leukemia; B/Myeloid; NOS, Inflammatory Carcinoma, Glioblastoma; NOS, Carcinoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Squamous Cell Carcinoma; NOS, Hypocellular Low Grade Lesion, Glioblastoma Multiforme, Pancreas-Undifferentiated Carcinoma, Differentiating Neuroblastoma, Myxoid Spindle Cell Tumor, Merkel Cell Tumor, Malignant Peripheral Nerve Sheath Tumor; NOS; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Hemangioma; NOS, Acute Myeloid Leukemia With Abnormal Marrow Eosinophils, Well Differentiated Neuroendocrince Tumor; Grade 1, Ganglioglioma; Anaplastic, Ependymoma WHO Grade 2, Synovial Sarcoma; NOS, Thymic Carcinoma; NOS, Tumor Cells; Malignant, Pilomyxoid Astrocytoma, Papillary Carcinoma; Columnar Cell, Plexiform Fibrohistiocytic Tumor, Astrocytoma; NOS; Angiocentric Glioma; Low-Grade Glioma, Carcinoma; Undifferentiated; NOS, Dermatofibrosarcoma Protuberans; NOS, High Grade Glioma With Necrosis; WHO Grade 4, Infiltrating ductular carcinoma, Acute Myeloid Leukemia With Myelodysplasia-Related Changes; Juvenile Myelomonocytic Leukemia; NOS, Infiltrating Duct And Mucinous Carcinoma, Intraductal Papillary Carcinoma, Serous Surface Papillary Carcinoma, Invasive Carcinoma, High Grade Malignant Epithelioid Neoplasm, Favor Pilocytic Astrocytoma With Increased Proliferation Indices, Medulloblastoma; Classic Morphology; CNS WHO Grade 4; NON-WNT/NON-SHH; Group 4 Subtype By Methylation, Composite Hodgkin And Non-Hodgkin Lymphoma, Atypical Teratoid/Rhabdoid Tumor; ATRT; NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor; ATRT-TYR, Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder, Hemangioendothelioma; NOS, Hypercellular Lesion With Atypia, Embryonal Carcinoma; NOS, Subependymoma; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Germ Cell Tumor; Nonseminomatous, Adrenal Cortical Carcinoma, Olfactory Neurocytoma, Large Cell Medulloblastoma; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Nuclear Protein In Testis (NUT)-Associated Carcinoma, Epithelial-Myoepithelial Carcinoma, Squamous Cell Carcinoma; Keratinizing; NOS, Ganglioneuroma; Other; Schwannoma, Glomus Tumor; Malignant, Neoplasm; Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Malignant Lymphoma; Non-Hodgkin; NOS, Embryonal Rhabdomyosarcoma; NOS; CNS Embryonal Tumor; NOS, Tenosynovial Giant Cell Tumor; NOS, Histologically Low-Grade Glioma, Chordoma; NOS; Ganglioneuroblastoma, Ependymoma; NOS, Invasive Mammary Carcinoma, Rhabdoid Tumor; Malignant, Medulloblastoma; Classic Histology, Adenocarcinoma In Villous Adenoma, Undifferentiated Sarcoma, Papillary Thyroid Carcinoma, Renal Cell Adenocarcinoma, Hodgkin Lymphoma; NOS, Malignant Histiocytosis, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Solid Pseudopapillary Tumor Of Ovary, Astrocytic Glioma; Histologically Low-Grade; Most Compatible With Pilocytic Astrocytoma, Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst, Myofibromatosis, Small Round Blue Cell Tumor, Meningioma; Atypical; CNS WHO Grade 2, Neoplasm; Uncertain Whether Benign Or Malignant; Adamantinomatous Craniopharyngioma; Craniopharyngioma, Pilocytic Astrocytoma, Lobular And Ductal Carcinoma, Desmoplastic/Nodular Medulloblastoma (Histologically Defined); CNS WHO Grade 4, Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation, Tumor Cells; Malignant; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Malignant Tumor, Brain Tumor, Gastrointestinal Stromal Tumor; Benign, Rasmussen Encephalitis, Medulloblastoma; NOS; Diffuse Hemispheric Glioma; H3 G34-Mutant; High-Grade Glioma, Adenocarcinoma;NOS; Glioblastoma; NOS, Malignant Peripheral Nerve Sheath Tumor (Mpnst), Embryonal Sarcoma, Neoplasm; Malignant; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Anaplastic Large Cell Lymphoma; T-Cell And Null-Cell Type, Teratoma; NOS, Pleomorphic Xanthoastrocytoma; NOS, Infiltrating duct and lobular carcinoma, Sclerosing Stromal Tumor, Tumor Cells; Uncertain Whether Benign Or Malignant, Acute Myeloid Leukemia; NOS; Juvenile Myelomonocytic Leukemia; NOS, Lobular Carcinoma; NOS, Schwannoma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Sarcoma; NOS, CNS Embryonal Tumor With Rhabdoid Features, Glial Neoplasm; Astrocytoma, Pancreas-Adenosquamous Carcinoma, Mesenchymal Lesion, Serous Adenocarcinoma; NOS, Hepatoblastoma; NOS, Astrocytoma; NOS; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Sex Cord-Gonadal Stromal Tumor; NOS, Adenoid Cystic Carcinoma, Embryonal Tumor, Acute Myeloid Leukemia; T(8;21)(Q22;Q22), Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor, Cavernoma, Malignant Tumor; Small Cell Type, Mixed Germ Cell Tumor; CNS Germ Cell Tumors; CNS Germinoma, Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma., Neoplasm; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Serous Carcinoma; NOS, Metastatic Secondary Tumors, Yolk Sac Tumor, Morphologically Consistent With Pilocytic Astrocytoma; WHO Grade 1, Neuroendocrine Tumor; NOS, Mixed Germ Cell Tumor; Acute Megakaryoblastic Leukemia, Juvenile Myelomonocytic Leukemia, Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL, Glioma; Malignant; High-Grade Glioma; Pleomorphic Xanthoastrocytoma, Papillary Glioneuronal Tumor; WHO Grade 1, Central Neuroblastoma, Dysembryoplastic Neuroepithelial Tumor, Mixed Adenocarcinoma And Squamous Cell Carcinoma; Pancreatobiliary-Type Carcinoma, Subcutaneous Panniculitis-Like T-Cell Lymphoma, Myofibroblastic Tumor, Nephroblastoma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; SHH-Activated And TP53-Wildtype, Malignant Melanoma; NOS; Meningeal Melanocytic Neoplasms (Includes Melanoma); Other, Carcinoma; Metastatic; NOS, Follicular Carcinoma; Minimally Invasive, Angiomyofibroblastoma, Classic Medulloblastoma; CNS WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Atypical Teratoid/Rhabdoid Tumor; ATRT-MYC, Astroblastoma, Meningothelial Meningioma; Meningioma; Other, Poorly Differentiated Chordoma, Chronic Myelogenous Leukemia, Pleomorphic Sarcoma, Supratentorial Ependymoma CNS WHO Grade 3, Leydig Cell Tumor; NOS, Adenosarcoma, Pigmented Dermatofibrosarcoma Protuberans, Astrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Astrocytoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Astrocytoma; NOS; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Myxofibrosarcoma, Precursor T-Cell Lymphoblastic Leukemia, Neurocytoma, Adrenal Cortical Tumor; NOS, Neoplasm; Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1, Neoplasm; Malignant; CNS Neuroblastoma; FOXR2-Activated; Other CNS Embryonal Tumors, Infiltrating duct and mucinous carcinoma, Adenocarcinoma In Situ; NOS, Mucinous Adenocarcinoma, Retinoblastoma; NOS, Anaplastic Ependymoma, Germ Cell Tumor; Nonseminomatous; CNS Germ Cell Tumors; CNS Non-Germinomatous Germ Cell Tumor, Acute Monoblastic And Monocytic Leukemia, Hemangioblastoma; CNS WHO Grade 1, Alveolar Rhabdomyosarcoma, Medullary Carcinoma; NOS, Adult Granulosa Cell Tumor Of Testis, Medulloblastoma; WHO Grade 4, Craniopharyngioma; Adamantinomatous, High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor), Spindle Cell Rhabdomyosaroma, Diffuse Midline Glioma; H3 K27M-Mutant, Epithelioid Sarcoma; NOS, Myoepithelial Carcinoma, Multiple Myeloma, Triple-Negative Breast Carcinoma, Hepatocellular Carcinoma; NOS; Nephroblastoma; NOS, Neuroblastoma; Schwannian Stroma Poor; Poorly Differentiated; Low MKI; Favorable Histology, Sertoli Cell Tumor; NOS, Ossifying Fibroma, Pleomorphic Liposarcoma, Amelanotic Melanoma, Liposarcoma; NOS, Non-Germinomatous Germ Cell Tumor, Lactotroph Adenoma, Transient Abnormal Myelopoiesis, Favor Posterior Fossa Ependymoma; WHO GRADE 3, Dysembryoplastic Neuroepithelial Tumor; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Carcinoma In Situ; NOS, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Ependymoma; Anaplastic, Glial Neoplasm; Favor Pilocytic Astrocytoma, Gastrointestinal Stromal Tumor; NOS, Serous Cystadenocarcinoma; NOS, Papillary Lesion With Atypical/High Grade Features, Spinal Ependymoma; WHO Grade 2, Ductal Carcinoma In Situ; NOS, Infiltrating Ductal Carcinoma, Mixed Type Rhabdomyosarcoma, Medulloblastoma; SHH-Activated And TP53-Mutant, Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy, Mesenchymal Chondrosarcoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Cribriform Carcinoma; NOS, Myxopapillary Ependymoma; Anaplastic, Ependymoma; Anaplastic; Supratentorial Ependymoma; NOS Or NEC, Astrocytoma; IDH-Mutant; WHO Grade 2, Meningioangiomatosis, Acute Myeloid Leukemia; NOS; Myeloproliferative Neoplasm; Unclassifiable, Endometrioid carcinoma; NOS, Adenocarcinoma In Situ; Non-Mucinous, Medulloblastoma; NOS; Medulloblastoma; Group 4, Papillary Carcinoma; Follicular Variant, Metaplastic Carcinoma; NOS, Choroid Plexus Carcinoma; Choroid Plexus Tumors, Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation, Low Grade Glioma, Sex Cord Stromal Tumor NOS, Stroma Poor; Poorly Differentiated Neuroblastoma With Low MKI; Favorable Histology, Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid), Melanotic Neuroectodermal Tumor, Ependymoma; NOS; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Angiocentric Glioma; Low-Grade Glioma, Malignant Lymphoma; NOS, Medulloblastoma WHO Grade 4, Choroid Plexus Papillary Tumor, Follicular Adenocarcinoma; Well Differentiated; Neuroblastoma; NOS, Neuroepithelial Tumor, Myelodysplastic Syndrome With Multilineage Dysplasia, Primary Mediastinal (Thymic) Large B-Cell Lymphoma, Mast Cell Leukemia, Ganglioneuroblastoma, Pheochromocytoma; NOS, Papillary Serous Adenocarcinoma, Mixed Germ Cell Tumor, Lymphoid Leukemia; NOS, Ependymoma NOS, Smooth Muscle Tumor Of Uncertain Malignant Potential, Combined Small Cell-Large Carcinoma, Sertoli Leydig Cell Tumor, Anaplastic Large Cell Lymphoma; ALK Positive, Meningioma; Malignant, Rhabdoid Tumor; NOS, Merkel Cell Carcinoma, Neoplasm; Uncertain Whether Benign Or Malignant; Meningioma; Other, Lymphoma; NOS, Gangliocytoma; NOS, Glioblastoma; NOS; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Mucinous Non-Cystic Carcinoma, Mucinous Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Pilocytic Astrocytoma, Ganglioglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, High Grade Carcinosarcoma, Subependymal Giant Cell Astrocytoma; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Squamous Cell Carcinoma; Metastatic; NOS, Myeloid Leukemia Associated With Down Syndrome, Meningeal Melanomatosis, Neuroepithelial Tumor With Glioneuronal-Like Features, Squamous Cell Carcinoma; Large Cell; Nonkeratinizing; NOS, Meningiomatosis; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Oligodendroglioma; NOS; Low-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Ependymoma; NOS; Posterior Fossa Ependymoma; Group PFA, CNS Embryonal Tumor; NOS, Favor Anaplastic Ependymoma, Diffuse Glioma, Adamantinomatous Craniopharyngioma (CNS WHO Grade 1), Medulloblastoma; Classic Variant; WHO Grade 4, Neoplasm; Uncertain Whether Benign Or Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Glioneuronal Tumor With Focal Increased Atypia, High Grade Neuroepithelial Tumor, Squamous Cell Carcinoma; Small Cell; Nonkeratinizing, Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged, Acute Myeloid Leukemia; Minimal Differentiation, Fibrillary Astrocytoma, Chordoma; NOS, Undifferentiated Leukemia, Myofibroma, Neoplasm; Malignant, Pleomorphic Xanthoastrocytoma; NOS; Low-Grade Glioma, Invasive Ductal Carcinoma, Subependymal Giant Cell Astrocytoma, Embryonal Rhabdomyosarcoma With Anaplastic Features, High-Grade Neuroepithelial Tumor, Low Grade Glioneuronal Tumor, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Acute Myeloid Leukemia Without Maturation, Adenocarcinoma With Mixed Subtypes, B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy, Malignant Peripheral Nerve Sheath Tumor; NOS, Hemangiosarcoma, Paraganglioma; NOS, Medulloblastoma; Nodular/Desmoplastic With Anaplastic/Large Cell Features; Non-WNT/Non-SHH; WHO Grade 4, Signet Ring Cell Carcinoma, Spindle Cell Melanoma; NOS, Lobular Adenocarcinoma, Undiagnosed Spindle Cell Tumor, Pilocytic Astrocytoma; WHO Grade 1; KIAA1549-BRAF Fusion, Meningioma, Hepatosplenic T-Cell Lymphoma; Precursor Cell Lymphoblastic Leukemia; NOS, Mesenchymal Chondrosarcoma, Anaplastic Ganglioglioma, Osteosarcoma; NOS, Oligoastrocytoma; NOS; Glioneuronal And Neuronal Tumors; Glioneuronal And Neuronal Tumors; NOS Or NEC, Ependymoma WHO Grade 3, Lung Adenocarcinoma; NOS, Lymphoproliferative Disorder; NOS, Atypical Lymphoid Infiltrate, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Wildtype, Genital Rhabdomyoma, Chondroblastic Osteosarcoma, Neuroepithelioma; NOS, Malignant Epithelioid And Myxoid Neoplasm, Pancreatoblastoma, Nephroblastoma (Wilms Tumor), Malignant Glioma, Ewing Sarcoma, Atypical Smooth Muscle Neoplasm, Acute Myelomonocytic Leukemia; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Epithelial Tumor; Benign, Favor Teratoma, Malignant Neoplasm Of Prostate, Non-Clear Cell Renal Cell Carcinoma, Meningioma; NOS; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Melanotic Schwannoma; Other, Medulloblastoma; NOS; Medulloblastoma; WNT-Activated, Carcinosarcoma NOS, Plasmacytoma; Extramedullary, Infantile Fibrosarcoma, Glioma; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, CNS Primative Neuroectodermal Tumor (PNET), Infiltrating duct carcinoma; NOS, Precursor B-Cell Lymphoblastic Leukemia, Squamous Cell Carcinoma In Situ; NOS, Acute Myeloid Leukemia; T(16;16)(P 13;Q 11), Papillary Transitional Cell Carcinoma, Atypical Teratoid/Rhabdoid Tumor, Low-Grade Glioneuronal; Neuronal Tumor, Combined Small Cell-Adenocarcinoma, Hepatocellular Carcinoma; NOS, Spindle Cell Carcinoma; NOS, Carcinoma; Diffuse Type, Lentiginous Melanocytic Nevus, Glioma; Malignant; Embryonal Tumor With Multilayered Rosettes; C19MC Altered; Other CNS Embryonal Tumors, Solitary Fibrous Tumor; NOS, Glioma; Malignant; Medulloblastoma; Medulloblastoma; Non-WNT/Non-SHH, Granulosa Cell Tumor; Malignant, Ganglioneuroma; Maturing Type; Favorable Histology, Invasive Lobular Carcinoma, Ganglioglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation, Medulloblastoma, Hepatoblastoma, Low Grade Glial/ Glioneuronal Tumor, Atypical Teratoid Rhabdoid Tumor; CNS WHO Grade 4, Oligoastrocytoma; NOS; Other; Other CNS Tumor; NOS Or NEC, Diffuse Glioma; Favor High Grade, Reactive Connective Tissue, Medulloblastoma; NOS; Medulloblastoma; SHH-Activated And TP53-Mutant, Tumor Cells; Malignant; Medulloblastoma; Medulloblastoma; NOS Or NEC, Glioma; Malignant; Malignant Peripheral Nerve Sheath Tumor; NOS, Melanoma; NOS, Malignant Melanocytic Neoplasm, Chronic Myelogenous Leukemia; BCR/ABL Positive, Vascular Lesion; Consistent With Hemangioma, Small Cell Neuroendocrine Carcinoma, Medullary Carcinoma, Anaplastic Astrocytoma; IDH-Wildtype; Glioblastoma; IDH Wildtype, Rhabdomyosarcoma; Embryonal Subtype, Medulloblastoma By Morphology; NON-WNT By Immunohistochemistry, Glioma; Malignant; Astrocytoma; IDH-Mutant; High-Grade Glioma, Ganglioglioma; NOS, Dysembryoplastic Neuroepithelial Tumor; Angiocentric Glioma; Low-Grade Glioma, Neoplasm; Uncertain Whether Benign Or Malignant; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Angiomatoid Fibrous Histiocytoma, Micropapillary Carcinoma; NOS, Infiltrating Lobular Carcinoma; NOS, Gastrointestinal Stromal Tumor, Desmoplastic Nodular Medulloblastoma; Medulloblastoma; Medulloblastoma; Group 4, Craniopharyngioma, Sertoli-Leydig Cell Tumor; Intermediate Differentiation; With Heterologous Elements, Acute Myeloid Leukemia; Inv(16)(P13;Q22), Subependymoma, Gliomatosis Cerebri, Infiltrating lobular carcinoma; NOS, Schwannoma; NOS, Oligodendroglioma; NOS; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dysplasia, Malignant Rhabdoid Tumor, Blue Nevus; Malignant, Adenocarcinoma; Pancreatobiliary Type, Ependymoma; NOS; Choroid Plexus Tumors; Choroid Plexus Papilloma, Ganglioneuroblastoma; Nodular Type, Granulosa Cell Tumor; Juvenile, Juvenile Granulosa Cell Tumor, Chronic Myeloid Leukemia; BCR-ABL1-Positive, Head & Neck Squamous Cell Carcinoma, Astrocytoma; NOS; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Medulloblastoma; SHH-Activated And TP53-Wildtype, Ganglioglioma; NOS; Ependymoma; Supratentorial Ependymoma; NOS Or NEC, Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma, Adrenal Cortical Adenoma; NOS, Adenocarcinoma; Pancreatobiliary Type; Pancreatobiliary-Type Carcinoma, Lipoblastomatosis, Central Neurocytoma; Glioneuronal And Neuronal Tumors, Control, HHV8 Positive Diffuse Large B-Cell Lymphoma, Pilocytic Astrocytoma; Low-Grade Glioma; Pleomorphic Xanthoastrocytoma, Neoplasm; Uncertain Whether Benign Or Malignant; Medulloblastoma; Medulloblastoma; Group 4, Large Cell Medulloblastoma, B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1), Central Osteosarcoma; NOS, Chordoma, Pilocytic Astrocytoma; Diffuse Leptomeningeal Glioneuronal Tumor; Glioneuronal And Neuronal Tumors, Pilocytic Astrocytoma; Low-Grade Glioma; Low-Grade Glioma; NOS Or NEC, Dermatofibrosarcoma Protuberans; Fibrosarcomatous, Neuroendocrine Carcinoma; NOS, Glioma; Malignant; Diffuse Pediatric-Type High-Grade Glioma; H3-Wildtype And IDH-Wildtype; High-Grade Glioma, Oligodendroglioma; NOS, Acute Monoblastic Leukemia, Glioma; Malignant; Low-Grade Glioma; Polymorphous Low-Grade Neuroepithelial Tumor Of The Young, Neoplasm, Medulloepithelioma; NOS, Oligodendroglioma; NOS; High-Grade Glioma; Oligodendroglioma; IDH-Mutant; And 1p/19q-Codeleted, Not Reported, Aggressive Fibromatosis, Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Langerhans Cell Histiocytosis; Disseminated, Glioma; Malignant; Low-Grade Glioma; Pilocytic Astrocytoma, Oligoastrocytoma; NOS, Undifferentiated Nasopharyngeal Carcinoma, Small Cell Carcinoma; NOS, Chordoma; NOS; Chordoma (Including Poorly Differentiated Chordoma); Other, Mesothelioma; Biphasic; Malignant; B Lymphoblastic Leukemia/Lymphoma; NOS, Central Neurocytoma; Low-Grade Glioma; Subependymal Giant Cell Astrocytoma, Undifferentiated Small Round Cell Sarcoma, Rhabdomyoma; NOS, Glioblastoma; IDH Wildtype, Neoplasm; Malignant; Astrocytoma; IDH-Mutant; Low-Grade Glioma, Therapy Related Myeloid Neoplasm, Acute Myeloid Leukemia; NOS, Malignant Tumor; Spindle Cell Type; CNS Sarcoma; CNS Sarcoma; NOS Or NEC, Leydig Cell Tumor; Benign, Myelodysplastic Syndrome With Single Lineage Dysplasia, Germinoma; CNS Germ Cell Tumors; CNS Germinoma, Glial Tumor, Synovial Sarcoma; Spindle Cell, Spindle Cell Melanoma; Type B, Familial Adenomatous Polyposis, Giant Cell Glioblastoma, Teratocarcinoma, Adenoma; NOS, Acral Lentiginous Melanoma; Malignant, Carcinoma NOS, Papillary Carcinoma; NOS, Poorly Differentiated Neuroblastoma, Solid Pseudopapillary Neoplasm Of Pancreas, Nasopharyngeal Carcinoma, Adenocarcinoma In Adenomatous Polyposis Coli, Leiomyoma; NOS, Embryonal Rhabdomyosarcoma; NOS, Choroid Plexus Papilloma; NOS; Other CNS Embryonal Tumors; Pineoblastoma, Tumor Cells; Benign, Marginal Zone B-Cell Lymphoma; NOS, Tumor Cells; Malignant; Other; Pineal Parenchymal Tumor Of Intermediate Differentiation, Pinealoma, Atypical Teratoid/Rhabdoid Tumor; INI1/SMARCB1-Altered; WHO Grade 4, Metastatic Signet Ring Cell Carcinoma, Astrocytoma, Desmoplastic Infantile Astrocytoma, Malignant Sarcoma With DICER1 Mutation; Favor Primary Intracranial Sarcoma; DICER1 Mutant, B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy, Colon Adenocarcinoma, Ependymoma; NOS; Supratentorial Ependymoma; NOS Or NEC, Proliferative Dermal Lesion In Congenital Nevus, Neoplasm; Malignant; Medulloblastoma; Medulloblastoma; WNT-Activated, Arteriovenous Malformation, Glioma; Malignant, Acinar Cell Carcinoma, Spinal Ependymoma; Histologically Low Grade (CNS WHO Grade 2), Leukemia; NOS, Hemangioblastoma; Other, High-Grade Serous Carcinoma, Medulloblastoma; NOS; Medulloblastoma; Group 3, Schwannian Stroma Poor Peripheral Neuroblastic Tumor; Consistent With Neuroblastoma, Acute Myeloid Leukemia With Mutated CEBPA, Parosteal Osteosarcoma, Epithelioid Mesothelioma; Malignant, Meningioma; NOS, Neoplasm; Uncertain Whether Benign Or Malignant; ATRT-SHH; Atypical Teratoid/Rhabdoid Tumor, Choriocarcinoma Combined With Other Germ Cell Elements, Brain Tumor; Low Grade Glioma, Ganglioglioma; NOS; Diffuse Astrocytoma; MYB- Or MYBL1-Altered; Low-Grade Glioma, Embryonal Tumor With Multilayered Rosettes C19MC-Altered, Neoplasm; Malignant; Uncertain Whether Primary Or Metastatic, Desmoplastic Small Round Cell Tumor, Embryonal Rhabdomyosarcoma, Langerhans Cell Histiocytosis, Glial Neoplasm Showing High-Grade Features, Oligodendroglioma, Malignant Melanoma; NOS, Myxopapillary Ependymoma; Ependymoma, Medulloblastoma; NOS; Medulloblastoma; NOS Or NEC, Neoplasm; Malignant; CNS Embryonal Tumor; NOS Or NEC; Other CNS Embryonal Tumors, Adenocarcinoma, B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1, Hemangioendothelioma; Malignant, Choroid Plexus Neoplasm, Craniopharyngioma; Adamantinomatous; Adamantinomatous Craniopharyngioma, Pinealoblastoma, Large Cell Medulloblastoma; Embryonal Tumor With Multilayered Rosettes; NOS; Other CNS Embryonal Tumors, Spindle Cell Sarcoma, Gliosarcoma, Central Primitive Neuroectodermal Tumor, Astrocytoma; IDH-Mutant; CNS WHO Grade 3, Astrocytoma; Benign, Pleomorphic Rhabdomyosarcoma; Adult Type, Myeloid Sarcoma, Glioma; Malignant; Other; Other Low-Grade B-Cell Lymphomas Of The CNS, Ganglioneuroma, Neoplasm; Malignant; High-Grade Glioma; High-Grade Glioma; NOS Or NEC, Clear Cell Renal Cell Carcinoma, Ependymoma; NOS; Atypical Meningioma, Oligodendroglioma; NOS; Other; Other CNS Tumor; NOS Or NEC, Malignant Peripheral Nerve Sheath Tumor, Glioma; Malignant; Diffuse Midline Glioma; H3 K27-Altered; High-Grade Glioma, Sertoli-Leydig Cell Tumor Of Intermediate Differentiation; NOS, Desmoplastic Nodular Medulloblastoma, Papillary Microcarcinoma, Craniopharyngioma; NOS, Low Grade Glial Neoplasm, Leiomyosarcoma; NOS, Follicular Adenocarcinoma; NOS",,TRUE,,,,CDS Metadata v1.3.3/Diagnosis, Individual Primary Site,Primary site in the body associated with the primary diagnosis.,"Abdomen, Abdominal Wall, Acetabulum, Adjacent Organ, Adrenal Gland, Anal/Perianal, Ankle Joint, Anterior Skull Base, Anus, Appendix, Ascitic Fluid, Axilla, Axillary Nodes, Bladder, Bladder/Prostate, Bone, Bone Face, Bone Marrow, Bone or Bone Marrow, Brain, Brain/Leptomeninges, Breast, Bronchus, Buttock, Calcaneum, Carpal Bone, Cauda Equina Spinal Cord, Celiac Nodes, Central Nervous System, Cerebellum, Cerebrospinal Fluid, Cervical Nodes, Cervical Spine, Cervical Vertebra, Cervix, Cheek, Chest, Chest Wall, Choroid, Clavicle, Coccyx, Colon, Craniospinal, Cutaneous, Deep Facial Areas, Deep Gray (e.g. Basal ganglia or Thalamus), Dermis, Distant Lymph Nodes, Dorsal Spine, Duodenum, Ear - Lateral Skull Base and Nasopharynx, Elbow Joint, Epididymis, Epitrochlear, Epitrochlear or Brachial Nodes, Esophagus, Ethmoid Bone, Eyelid, Face, Fallopian Tube, Female Reproductive System Part, Femur, Fibula, Fibula Head, Finger, Foot, Foot Bone, Foot Joint, Foot Phalanges, Forearm, Fourth Ventricle, Frontal Bone, Frontal Cortex, Frontal Lobe, Gallbladder, Gastrointestinal Tract, Hand, Hand Bone, Hand Joint, Hand Phalanges, Head, Head and Neck, Heart, Hip, Hip/Inguinal Region, Humerus, Hypodermis, Hypopharynx, Iliac Crest, Ilium, Inferior Limb, Infraclavicular Nodes, Inguinal, Inguinal or Femoral Nodes, Intra-abdominal, Intraperitoneal, Intraspinal, Intrathoracic, Ischium, Kidney, Knee Joint, Lacrimal Bone, Large Vessels, Larynx, Larynx - Trachea, Lateral Ventricle, Leg, Leptomeningeal, Liver, Liver/Biliary Tract, Lower Arm, Lower Extremity, Lower Leg, Lumbar Spinal Cord, Lumbar Spine, Lumbar Vertebra, Lung, Lymph Node, Lymphatic Basin, Mandible, Maxilla, Mediastinum, Medulla, Meninges, Mesenteric Nodes, Metacarpals, Metatarsals, Midbrain, Middle Ear, Nasal Bone, Nasal Cavity, Nasal Cavity and Paranasal Sinuses, Nasal Septum, Nasopharynx, Neck, Not Reported, Occipital Bone, Occipital Cortex, Occipital Lobe, Oculus Dexter (Right Eye), Oculus Sinister (Left Eye), Oculus Uterque (Both Eyes), Omentum, Optic Chiasm, Optic Nerve, Oral Cavity, Orbit, Oropharynx, Other, Ovary, Pancreas, Para-Aortic Lymph Nodes, Paranasal Sinus, Parapharyngeal Area, Paraspinal, Paratesticular, Parathyroid, Parietal Bone, Parietal Cortex, Parietal Lobe, Parotid, Patella, Pectoral Nodes, Pelvis, Pelvis/Sacrum, Penis, Perineum, Peritoneum, Pineal, Pleura, Pleura Thymus, Pleural Effusion, Pons Varolii, Popliteal Nodes, Pre-auricular Nodes, Prostate, Radius Bone, Rectum, Regional Lymph Nodes, Retroperitoneum, Rib, Sacrococcygeal, Sacrum, Salivary Gland, Scalp, Scapula, Scapula/Clavicle, Schlemm's Canal, Shoulder, Shoulder Girdle, Shoulder Joint, Skin, Skull, Skull and Face Bone, Small Intestine, Soft Tissue, Soft Tissue; NOS, Sphenoid Bone, Spinal Cord, Spine, Spleen, Splenic Hilar Nodes, Sternum, Sternum/Chest Wall, Stomach, Superior Limb and Shoulder, Superior Maxilla, Supraclavicular Nodes, Suprasellar Pituitary, Talus, Tarsal Bone, Temporal Bone, Temporal Cortex, Temporal Lobe, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Spinal Cord, Thoracic Vertebra, Thorax, Thymus, Thyroid, Thyroid and Parathyroid, Tibia, Toe, Tonsil, Trabecular Meshwork, Trachea, Trunk, Trunk - Paraspinal, Ulna, Unknown, Upper Airway, Upper Arm, Upper Extremity, Ureter, Urogenital, Uterus, Vagina, Vasculo-Nervous, Viscera, Vulva, Waldeyer's Ring, Wrist Joint, Zygomatic Bone",,FALSE,,,,CDS Imaging v1.0/Diagnosis, @@ -264,7 +291,7 @@ Individual Tumor Subtype,"The subtype related to the scientific determination an Individual Tumor Grade,"Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness.","G1, G2, G3, G4, GX, GB, High Grade, Intermediate Grade, Low Grade, Unknown, Not Reported, Not Applicable",,FALSE,,,,CDS Imaging v1.0, Individual Site of Origin,"The text term used to describe the anatomic site of origin, of the patient's malignant disease.","Abdominal Aorta, Abdominal Esophagus, Abdominal Muscle, Abdominal Skin, Abdominal Wall, Abducens Nerve, Accessory Nerve, Acetabulum, Acromioclavicular Joint, Adipose Tissue, Adrenal Cortex, Adrenal Gland, Adrenal Medulla, Ampulla of Vater, Anal Canal, Anal Transitional Zone, Ankle Joint, Ankle Skin, Antecubital Region, Anterior Cranial Fossa, Anterior Mediastinum, Anterior Surface of the Epiglottis, Anterior Wall of the Bladder, Anterior Wall of the Nasopharynx, Antrum Pylori, Anus, Aorta, Aortocaval Lymph Node, Apex of the Tongue, Aponeurosis, Appendage of the Uterus, Appendix, Areola, Arm Skin, Artery, Articular Cartilage, Aryepiglottic Fold, Arytenoid Cartilage, Ascending Colon, Autonomic Nervous System, Axilla, Axillary Artery, Axillary Lymph Node, Axillary Tail of the Breast, Back, Bartholin Gland, Basal Ganglia, Base of the Tongue, Biceps, Biceps Femoris, Bile Canaliculus, Bile Duct, Biliary Tract, Bladder, Bladder Neck, Bladder Trigone, Blood, Blood Vessel, Body of Stomach, Body of the Pancreas, Body of the Penis, Bone, Bone Marrow, Bone of the Extremity, Brachial Lymph Node, Brachial Plexus, Brachialis, Brain, Brain Dura Mater, Brain Stem, Brain Ventricle, Branchial Cleft Remnant, Breast, Broad Ligament, Bronchial Lymph Node, Bronchiole, Bronchus, Buccal Mucosa, Buttock, C1 Vertebra, C2 Vertebra, Calcaneum, Calf, Cardiac Atrium, Cardiac Ventricle, Carina, Carotid Artery, Carotid Body, Carpal Bone, Carpal Region, Cartilage, Cauda Equina, Cecum, Celiac Artery, Celiac Lymph Node, Central Nervous System, Central Portion of the Breast, Cerebellopontine Angle, Cerebellum, Cerebral Cortex, Cerebral Hemisphere, Cerebral Meninges, Cerebral Peduncle, Cerebral White Matter, Ceruminous Gland, Cervical Esophagus, Cervical Gland, Cervical Lymph Node, Cervix Uteri, Cheek, Chest, Chest Wall, Choroid, Choroid Plexus, Choroid Plexus of the Fourth Ventricle, Choroid Plexus of the Lateral Ventricle, Choroid Plexus of the Third Ventricle, Ciliary Body, Clitoris, Coccyx, Cochlear Nerve, Colon, Commissure of the Lip, Common Bile Duct, Concha, Conjunctiva, Connective Tissue, Conus Medullaris, Coracobrachialis, Cornea, Corneoscleral Limbus, Corpus Callosum, Corpus Striatum, Corpus Uteri, Costal Cartilage, Costovertebral Joint, Cowper Gland, Cranial Nerve, Craniopharyngeal Duct, Cricoid Cartilage, Cul-de-sac, Cuneiform Cartilage, Cystic Duct, Descending Colon, Diaphragm, Diaphragmatic Lymph Node, Dome of the Bladder, Duct of Gartner, Ductus Santorini, Duodenum, Dura Mater, Ear, Ear Skin, Ectocervix, Elbow Joint, Elbow Skin, Endocardium, Endocervix, Endocrine Gland, Endometrial Stroma, Endometrium, Ependyma, Epicardium, Epididymis, Epidural Spinal Canal Space, Epiglottis, Epitrochlear Lymph Node, Esophagus, Ethmoid Bone, Ethmoid Sinus, Eustachian Tube, External Acoustic Meatus, External Ear, External Lip, External Lower Lip, External Nose, External Upper Lip, Extrahepatic Bile Duct, Eye, Eyebrow, Eyelid, Facial Bone, Facial Nerve, Fallopian Tube, False Vocal Cord, Falx Cerebelli, Falx Cerebri, Fascia, Female Genitalia, Femoral Artery, Femoral Lymph Node, Femoral Nerve, Femur, Fibrous Tissue, Fibula, Finger, Fingernail, Flank, Floor of Mouth, Foot, Foot Bone, Foot Phalanx, Foot Skin, Forearm, Forehead, Fourth Ventricle, Frontal Bone, Frontal Lobe, Frontal Pole, Frontal Sinus, Fundus of the Stomach, Fundus Uteri, Gallbladder, Gastric Cardia, Gastric Lymph Node, Gastrocnemius Muscle, Gastroesophageal Junction, Gastrointestinal Tract, Gingiva, Gland of Littre, Glans Penis, Globus Pallidus, Glossopharyngeal Nerve, Glottis, Gluteus Maximus, Greater Curvature of the Stomach, Hand, Hand Digit 1, Hand Phalanx, Hand Skin, Hard Palate, Head and Neck Lymph Node, Head of the Pancreas, Head Skin, Heart, Helix, Hematopoietic System, Hepatic, Hepatic Duct, Hepatic Flexure, Hepatic Lymph Node, Hip, Hip Joint, Hippocampus, Humerus, Hymen, Hyoid Bone, Hypoglossal Nerve, Hypopharynx, Hypothalamus, Ileocecal Valve, Ileum, Iliac Artery, Iliac Lymph Node, Iliac Vein, Iliopsoas Muscle, Ilium, Inferior Vena Cava, Infraclavicular Lymph Node, Infraclavicular Region, Infratentorial Brain, Inguinal Lymph Node, Inguinal Region, Inner Canthus, Inner Ear, Intercostal Lymph Node, Intercostal Muscle, Intercostal Nerve, Internal Capsule, Internal Iliac Lymph Node, Internal Mammary Artery, Internal Mammary Lymph Node, Internal Nare, Intervertebral Disc, Intestine, Intra-Abdominal Lymph Node, Intrahepatic Bile Duct, Intraocular Route of Administration, Intrathoracic Lymph Node, Iris, Ischiorectal Fossa, Ischium, Islet of Langerhans, Isthmus Uteri, Jaw Bone, Jaw Joint, Jejunum, Joint, Kidney, Knee Joint, Knee Skin, Labium, Labium Majus, Labium Minus, Lacrimal Gland, Lacrimal Sac, Large Intestine, Laryngeal Cartilage, Larynx, Lateral Ventricle, Lateral Wall of the Bladder, Lateral Wall of the Nasopharynx, Lateral Wall of the Oropharynx, Lateral Wall of the Pharynx, Leg Skin, Lens, Lesser Curvature of the Stomach, Ligament, Lingual Tonsil, Lingula of the Lung, Lip, Liver, Lobule of the Auricle, Lower Extremity, Lower Gingiva, Lower Lobe of the Lung, Lower Third of the Esophagus, Lower-Inner Quadrant of the Breast, Lower-Outer Quadrant of the Breast, Lumbar Nerve, Lumbosacral Plexus, Lung, Lymph Node, Lymph Node of Inguinal Region or Leg, Lymphatic, Main Bronchus, Male Genitalia, Male Prepuce, Mammary Gland, Mandible, Masseter Muscle, Maxilla, Maxillary Sinus, Meckel Diverticulum, Median Nerve, Mediastinal Lymph Node, Mediastinum, Medulla Oblongata, Meibomian Gland, Meninges, Meniscus Lateralis, Meniscus Medialis, Mentum, Mesencephalon, Mesenteric Artery, Mesenteric Lymph Node, Mesentery, Mesonephric Duct, Mesonephros, Mesovarium, Metacarpal Bone, Metatarsal Bone, Middle Cranial Fossa, Middle Ear, Middle Lobe of the Right Lung, Middle Third of the Esophagus, Minor Salivary Gland, Mons Pubis, Mucosa of the Lip, Mucosa of the Lower Lip, Mucosa of the Upper Lip, Muscle, Musculus Latissimus Dorsi, Myocardium, Myometrium, Nasal Bone, Nasal Cartilage, Nasal Cavity, Nasal Septum, Nasal Turbinate, Nasolacrimal Duct, Nasopharynx, Neck Skin, Nerve, Nervous System, Nipple, Nose, Nostril, Obturator Lymph Node, Obturator Nerve, Occipital Bone, Occipital Lobe, Occipital Lymph Node, Oculomotor Muscle, Oculomotor Nerve, Olfactory Nerve, Omentum, Optic Chiasm, Optic Nerve, Optic Tract, Oral Cavity, Orbit, Oropharynx, Other Specified Parts of Pancreas, Outer Canthus, Ovary, Palate, Palatine Tonsil, Palmar Fascia, Pancreas, Pancreatic Duct, Pancreatic Lymph Node, Paraaortic Lymph Node, Paraganglion, Parametrium, Paranasal Sinus, Parasympathetic Nervous System, Parathyroid Gland, Paratracheal Lymph Node, Parietal Bone, Parietal Lobe, Parietal Pleura, Parotid Duct, Parotid Gland, Parotid Gland Lymph Node, Patella, Pectoral Lymph Node, Pectoralis Major, Pelvic Lymph Node, Pelvis, Penis, Pericardium, Perineum, Peripheral Nerve, Peritoneal Cavity, Peritoneum, Pharyngeal Tonsil, Pharynx, Pia Mater, Pineal Gland, Pituitary Gland, Placenta, Plantar Fascia, Plantar Region, Pleura, Pons Varolii, Popliteal Lymph Node, Portal Lymph Node, Postcricoid Region, Posterior Cranial Fossa, Posterior Mediastinum, Posterior Wall of the Bladder, Posterior Wall of the Hypopharynx, Posterior Wall of the Nasopharynx, Posterior Wall of the Oropharynx, Posterior Wall of the Pharynx, Preauricular Lymph Node, Prostate Gland, Prostatic Utricle, Psoas Muscle, Pubic Bone, Pubic Symphysis, Pulmonary, Pulmonary Hilar Lymph Node, Putamen, Pylorus, Pyriform Sinus, Quadriceps Muscle of the Thigh, Radial Artery, Radial Nerve, Radius Bone, Rathke Pouch, Rectosigmoid Colon, Rectosigmoid Region, Rectum, Rectus Abdominis, Renal, Renal Artery, Renal Calyx, Renal Pelvis, Reticuloendothelial System, Retina, Retromolar Trigone, Retroperitoneal Lymph Node, Retroperitoneum, Retropharyngeal Lymph Node, Round Ligament of the Uterus, Sacral Bone, Sacral Lymph Node, Sacral Nerve, Sacral Plexus, Salivary Gland, Scalene Lymph Node, Scalp, Scapula, Sciatic Nerve, Sclera, Scrotum, Sella Turcica, Seminal Vesicle, Shoulder, Shoulder Girdle, Shoulder Joint, Sigmoid Colon, Skeletal Muscle Tissue, Skin, Skin Of The Axilla, Skin of the Face, Skin of the Lip, Skin of the Lower Limb and Hip, Skin of the Scalp and Neck, Skin of the Trunk, Skin of the Upper Limb and Shoulder, Skull, Skullcap, Small Intestine, Spermatic Cord, Sphenoid Bone, Sphenoid Sinus, Sphincter of Oddi, Spinal Cord, Spinal Cord Dura Mater, Spinal Meninges, Spinal Nerve, Spleen, Splenic Flexure, Splenic Hilar Lymph Node, Sternocleidomastoid Muscle, Sternocostal Joint, Stomach, Subclavian Artery, Subcutis, Subglottis, Sublingual Lymph Node, Sublingual Salivary Gland, Submandibular Duct, Submandibular Gland, Submandibular Lymph Node, Superior Vena Cava, Superior Wall of the Nasopharynx, Supraclavicular, Supraclavicular Lymph Node, Supraglottis, Suprasellar Region, Supratentorial Brain, Sympathetic Nervous System, Synovial Bursa, Synovial Fluid, Tail of the Pancreas, Tarsal Bone, Temporal Bone, Temporal Lobe, Tendon, Tendon Sheath, Tentorium Cerebelli, Testis, Thalamus, Thigh, Third Ventricle, Thoracic Duct, Thoracic Esophagus, Thoracic Lymph Node, Thorax, Thymus Gland, Thyroglossal Duct, Thyroid Cartilage, Thyroid Gland, Tibia, Toe, Toenail, Tongue, Tonsillar Fossa, Tonsillar Pillar, Tooth Socket, Trachea, Tracheobronchial Lymph Node, Tragus, Transverse Colon, Trapezius Muscle, Triceps Brachii, Trigeminal Nerve, Trochlear Nerve, True Vocal Cord, Trunk, Tunica Vaginalis, Ulna, Ulnar Artery, Ulnar Nerve, Umbilicus, Uncus, Undescended Testes, Upper Extremity, Upper Gingiva, Upper Lobe of the Lung, Upper Third of the Esophagus, Upper-Inner Quadrant of the Breast, Upper-Outer Quadrant of the Breast, Urachus, Ureter, Ureteric Orifice, Ureteropelvic Junction, Urethra, Uterine Gland, Uterine Ligament, Uterus, Uvea, Uvula, Vagina, Vaginal Fornix, Vagus Nerve, Vallecula, Vas Deferens, Vein, Vena Cava, Vermis, Vertebra, Vertebral Column, Visceral Pleura, Vocal Cord, Vulva, Waldeyer's Tonsillar Ring, Wall of the Pharynx, Wrist Joint, Wrist Skin",,FALSE,,,,CDS Imaging v1.0, Individual Age at Diagnosis,"Age at the time the individual was diagnosed, expressed in years.",,,FALSE,,,,CDS Imaging v1.0,num -Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,TRUE,,,,CDS Imaging v1.0/participant,str +Individual Gender,"Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.","Female, Male, Intersex, Unknown, Unspecified, Not Reported",,FALSE,,,,CDS Imaging v1.0/participant,str Individual dbGaP Subject Id,The identifer assigned to the participant by dbGap,,,FALSE,,,,CDS Imaging v1.0,str Individual Days to Last Followup,Number of days between the dates used for index and last follow-up,,,FALSE,,,,CDS Imaging v1.0,int Individual Primary Tumor Stage,Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"Not Reported, T0, T1, T1a, T1a1, T1a2, T1b, T1b1, T1b2, T1c, T1mi, T2, T2a, T2a1, T2a2, T2b, T2c, T2d, T3, T3a, T3b, T3c, T3d, T4, T4a, T4b, T4c, T4d, T4e, T5, Ta, Tis, Tis (DCIS), Tis (LCIS), Tis (Paget's), TX, Unknown",,FALSE,,,,CDS Imaging v1.0, @@ -277,6 +304,7 @@ Individual Therapeutic Agent,Text identification of the individual agent(s) used Individual Metastasis Stage,Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.,"M0, M1, M1a, M1b, M1c, MX, cM0 (i+), Unknown, Not Reported",,FALSE,,,,CDS Imaging v1.0, Individual Recurrence Status,Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment.,"Yes, Unknown, Not Reported, Not Applicable, Not Allowed to Collect, No, Censored",,FALSE,,,,CDS Imaging v1.0, Individual Treatment Response,Text term that describes the patient's final outcome after the treatment was administered.,"Complete Response, No Evidence of Disease, No Response, Not Applicable, Not Evaluable, Not Reported, Partial Response, Persistent Disease, Progressive Disease, Stable Disease, Unknown",,FALSE,,,,CDS Imaging v1.0/participant, +Individual Vital Status,Text term that describes the patient's current vital status.,"Unspecified, Unknown, Dead, Alive, Not reported",,FALSE,,,,CDS Imaging v1.0/participant, Institution,Institutions participating in consortia activities,,"Component, Institution Name, Institution Full Name, Institution Alias, Institution Location State, Institution Location City, Rorid",FALSE,,,,, Institution Name,"Machine readable name of the institution. (e.g. ArizonaStatUniversity, BostonUniversity, etc.)",,,TRUE,,,,, Institution Full Name,"Human readable, full name of the institution. (e.g. Arizona State University, Boston University, etc.)",,,TRUE,,,,, @@ -284,15 +312,15 @@ Institution Alias,"Alias of the institution (e.g. ASU, BU, etc.)",,,TRUE,,,,,uni Institution Location State,"The US state the institution is located in. Use Not Applicable, if not applicable. ","Alabama, Alaska, American Samoa, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, District of Columbia, Florida, Georgia, Guam, Hawaii, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Minor Outlying Islands, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Northern Mariana Islands, Not Applicable, Ohio, Oklahoma, Oregon, Pennsylvania, Puerto Rico, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, U.S. Virgin Islands, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin, Wyoming",,TRUE,,,,, Institution Location City,The City the institution is located in. ,,,TRUE,,,,, Rorid,Unique identifier (ROR ID) of an the institution,,,TRUE,,,,, -Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Type, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, +Model,Information about a non-human organism or any cell line from which experimental data is derived.,,"Component, Model_id, Study Key, Individual Key, Model Age, Model Age Unit, Model Sex, Model Disease Type, Model Primary Diagnosis, Model Primary Site, Model Site of Origin, Model Tumor Subtype, Model Species, Model Type, Model Method, Model Source, Model Acquisition Type, Model Graft Source, Model Genotype, Model Treatment Type, Model Therapeutic Agent, Model Days to Treatment, Model Treatment Response",FALSE,,,Study,, Model_id,A unique identifier used by schematic for record updates and as a reference key in other schemas.,,,TRUE,,,,,unique Model Age,"The age of the model when used for an experiment (mice, zebrafish, etc.) or model source (cell lines, organoids, etc.)",,,FALSE,,,,,num Model Age Unit,The unit corresponding to the age provided for this model.,,,FALSE,,,,,str -Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,FALSE,,,,, +Model Sex,The biological sex of the model or model source.,"Decline to answer, Don't know, Female, Intersex, Male, None of these describe me, Prefer not to answer, Unknown, X",,TRUE,,,,, Model Disease Type,The tumor type associated with the model.,"Acinar Cell Neoplasms, Adenomas and Adenocarcinomas, Adnexal and Skin Appendage Neoplasms, Basal Cell Neoplasms, Blood Vessel Tumors, Complex Mixed and Stromal Neoplasms, Cystic; Mucinous and Serous Neoplasms, Ductal and Lobular Neoplasms, Epithelial Neoplasms; NOS, Fibroepithelial Neoplasms, Fibromatous Neoplasms, Germ Cell Neoplasms, Giant Cell Tumors, Gliomas, Granular Cell Tumors and Alveolar Soft Part Sarcomas, Immunoproliferative Diseases, Leukemias, Lipomatous Neoplasms, Lymphatic Vessel Tumors, Mast Cell Neoplasm, Meningiomas, Mesothelial Neoplasms, Miscellaneous Bone Tumors, Miscellaneous Tumors, Mucoepidermoid Neoplasms, Myelodysplastic Syndromes, Myomatous Neoplasms, Myxomatous Neoplasms, Neoplasms; NOS, Nerve Sheath Tumors, Neuroepitheliomatous Neoplasms, Nevi and Melanomas, Not Applicable, Not Otherwise Specified, Not Reported, Odontogenic Tumors, Osseous and Chondromatous Neoplasms, Paragangliomas and Glomus Tumors, Plasma Cell Neoplasm, Soft Tissue Tumors and Sarcomas; NOS, Squamous Cell Neoplasms, Synovial-like Neoplasms, Thymic Epithelial Neoplasms, Transitional Cell Papillomas and Carcinomas, Trophoblastic neoplasms, Unknown",,FALSE,,,,, Model Tumor Subtype,The molecular subtype of the tumor associated with the model.,,,FALSE,,,,,list like -Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,FALSE,,,,,list like -Model Type,The general label used to identify the model type.,,,FALSE,,,,,str +Model Species,The species of origin corresponding to the model.,"African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +Model Type,The general label used to identify the model type.,,,TRUE,,,,,str Model Method,The term that describes the general method used to create the model.,,,FALSE,,,,,str Model Source,"The reference organism from which the model was derived, if applicable. This could be a specific Biospecimen Key, Model Key, mouse type, cell line, or other reference. Provide RRID if available, to link to existing cell line information. Do not use this field to designate an Individual as the source of the model.",,,FALSE,,,,,str Model Acquisition Type,"The method by which the model was obtained. If applicable, please provide a link to the supplier of the model source.",,,FALSE,,,,,str @@ -317,7 +345,7 @@ Chair Roles,"Committee or working group chair role(s) the individual fulfilled ( Consent For Portal Display,Consent from individual to display Person information in the CCKP,"No, Yes",,TRUE,,,,, Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, GrantView Key, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,Grant View,, -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like @@ -329,7 +357,7 @@ Project Type,Type of project,"Core, Project",,TRUE,,,,, Project Description,Description of the project,,,TRUE,,,,, Project Investigator,Investigator(s) associated witht the project.,,,TRUE,,,,,list like Project View,The denormalized manifest for project submission.,,"Component, ProjectView_id, GrantView Key, Project Name, Project Type, Project Description, Project Investigator",FALSE,,,Grant View,, -Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Project Grant Number,Grant number(s) associated with the project,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Project Consortium Name,Consortia associated with the project.,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, ProjectView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Publication Doi,The digital object identifier associated with the publication in the form of https://www.doi.org/{doi} to comply with CrossRef DOI display guidelines.,,,FALSE,,,,,unique @@ -341,22 +369,22 @@ Publication Year,Year of the publication,,,TRUE,,,,, Publication Keywords,"Keywords associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Publication Authors,"Authors of the publication. Multiple values permitted, comma separated.",,,TRUE,,,,,list like Publication Abstract,The abstract of the publication.,,,TRUE,,,,, -Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like +Publication Assay,"Assay(s) associated with the publication. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like Publication Tumor Type,"Tumor type(s) associated with the publication. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,TRUE,,,,,list like Publication Tissue,"Tissue type(s) associated with the publication. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Study Key, GrantView Key, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,Study,, -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, +Sequencing Level 1,Unaligned/unprocessed sequencing data ,,"Component, SequencingLevel1_id, Filename, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Read Length, NGS Raw Reads, NGS Unique Bases, NGS Sequencing Coverage, NGS Library Preparation Kit Name, NGS Library Preparation Kit Vendor, NGS Library Preparation Kit Version, NGS Read Indicator, NGS Library Preparation Days from Index, NGS Sequencing Library Construction Days from Index",FALSE,,,,MC2, SequencingLevel1_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique NGS Sequencing Coverage,Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length),,,FALSE,,,,CDS/Genomic info,num NGS Read Length,"The average length of the sequencing reads. Can be integer, null",,,TRUE,,,,HTAN,num NGS Library Selection Method,How nucleic acid molecules are isolated.,"5-methylcytidine antibody, CAGE, rRNA Depletion, cDNA, cDNA oligo_dT, cDNA random priming, CF-H, CF-M, CF-S, CF-T, Poly-T Enrichment, ChIP, DNAse, HMPR, Hybrid Selection, Not applicable, Inverse rRNA, MBD2 protein methyl-CpG binding domain, miRNA Size Fractionation, MDA, MF, MNase, MSLL, Oligo-dT, Other, Padlock probes capture method, PCR, PolyA, RACE, Random, Random PCR, Reduced Representation, Repeat fractionation, Restriction Digest, RT-PCR, Size fractionation, Affinity Enrichment, Unspecified",,FALSE,,,,HTAN,str NGS Library Strategy,"The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)","AMPLICON, ATAC-seq, Bisulfite-Seq, ChIA-PET, ChIP-Seq, CLONE, CLONEEND, CTS, Spatial-tx, snATAC-Seq, DNase-Hypersensitivity, scMultiome, EST, FAIRE-seq, FINISHING, FL-cDNA, Hi-C, MBD-Seq, MeDIP-Seq, miRNA-Seq, MNase-Seq, MRE-Seq, ncRNA-Seq, Other, POOLCLONE, RAD-Seq, RIP-Seq, RNA-Seq, SELEX, DNA-Seq, ssRNA-seq, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, Tn-Seq, WCS, WGA, WGS, WXS",,TRUE,,,,CDS/sequencing,str -NGS Library Source,The type of source material being sequenced.,"Genomic, Genomic Single Cell, Metagenomic, Single Nucleus, Single Cell, Metatranscriptomic, Other, Synthetic, Transcriptomic, Transcriptomic Single Cell, Viral RNA",,TRUE,,,,CDS/sequencing,str -NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,CDS/sequencing,str +NGS Library Source Material,The type of source material being sequenced.,"Bulk Cells, Bulk Tissue, Bulk Nuclei, Single-nuclei, Single-cells, Not Reported",,TRUE,,,,GC Data Model v6.0.2/genomic info/library_source_material,str +NGS Library Layout,"Text description of the library layout, one of Paired-end or Single.","Paired-end, Single-indexed",,TRUE,,,,GC Data Model v6.0.2/genomic info/library_layout,str NGS Library Preparation Kit Name,Name of Library Preparation Kit. String,,,FALSE,,,,HTAN,str NGS Library Preparation Kit Vendor,Vendor of Library Preparation Kit. String,,,FALSE,,,,HTAN,str NGS Library Preparation Kit Version,Version of Library Preparation Kit. String,,,FALSE,,,,HTAN,str @@ -367,7 +395,8 @@ NGS Library Preparation Days from Index,Number of days between sample for assay NGS Sequencing Library Construction Days from Index,Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable',,,TRUE,,,,HTAN,regex match \d+$|Not\sApplicable$|unknown$ NGS Unique Bases,Count of unique basecalls present in the data.,,,FALSE,,,,CDS/Sequencing,num NGS Raw Reads,Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file. ,,,FALSE,,,,CDS/Sequencing,num -Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, +NGS Library Source Molecule,The source of nucleic acids represented in the sequencing library. ,"Genomic DNA, Metagenomic, Metatranscriptomic, Not Reported, Transcriptome, Viral RNA",,,,,,GC Data Model v6.0.2/genomic info/library_source_molecule,str +Sequencing Level 2,Sequencing data that has been aligned with a reference genome.,,"Component, SequencingLevel2_id, SequencingLevel1 Key, Filename, NGS Library Strategy, NGS Library Source Material, NGS Library Source Molecule, NGS Library Selection Method, NGS Library Layout, NGS Sequencing Platform, NGS Sequencing Design Description, NGS Raw Reads, NGS Stitched Reads, NGS Aligned Reads, NGS Deduplicated Reads, NGS Trimmed Reads, NGS MapQ30, NGS Unique Bases, NGS Read Length, NGS Sequencing Coverage, Genomic Reference, Software and Version",FALSE,,,,, SequencingLevel2_id,A unique identifier used by schematic for record updates and as a reference key in other schemas,,,TRUE,,,,MC2,unique NGS Stitched Reads,"Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads",,,FALSE,,,,HTAN,num NGS Aligned Reads,Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.,,,FALSE,,,,HTAN,num @@ -435,11 +464,11 @@ Genome Annotation URL,Link to the human genome annotation (GTF) file; ftp or ref DataDSP,Dataset sharing plan information. Used to indicate planned usage of MC2 Center supported Synapse projects.,,"Component, DataDSP_id, GrantView Key, Study Key, DatasetView Key, DSP Dataset Alias, DSP Dataset Name, DSP Dataset Url, DSP Dataset Assay, DSP Dataset Level, DSP Dataset Species, DSP Dataset Tumor Type, DSP Dataset Tissue, DSP Dataset File Formats, DSP Number of Files, DSP Number of Samples, DSP Number of Participants, DSP Storage Size, DSP Dataset Description, DSP Planned Upload Date, DSP Planned Release Date, DSP Data Use Codes, DSP IRB Form, DSP Dataset Destination, DSP Dataset Metadata",FALSE,,,Study,, DSP Dataset Name,Name of the dataset,,,TRUE,,,,,str DSP Dataset Alias,"Alias of the dataset. For Synapse storage, the Synapse id associated with the storage folder should be used. Must be unique.",,,FALSE,,,,,unique -DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy",,TRUE,,,,,list like -DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like +DSP Dataset Assay,"The type of data contained in this group of files. Multiple values permitted, comma separated.","10-cell RNA Sequencing, 16S Ribosomal Gene Sequencing Assay, 3' RNA-seq, 3C, 3C-qPCR, 3D ATAC-PALM, 3D Bioprinting, 3D Cell Culture, 4C, 5C, ATAC-Seq, ATP Bioluminescence Assay, Affinity Purification Mass Spectrometry, Allograft, Amplicon Sequencing, Angiogenesis Assay, Apoptosis Assay, Atomic Absorption Spectrophotometry, Atomic Absorption Spectroscopy, Atomic Force Microscopy, Autoradiography, Barcode-Seq, Bicinchoninic Acid Assay, Binding Assay, Bio-Layer Interferometry, Bioluminescence Imaging, Bisulfite Sequencing, Brightfield Microscopy, Brillouin Microscopy, CASFISH, CITE-seq, CLIP-qPCR, CRISPR, CUT&RUN, CUT&Tag-Sequencing, Cell Adhesion Assay, Cell Proliferation Assay, Cell Viability Assay, Cell-spreading Assay, CellTiter-Glo Luminescent Cell Viability Assay, Cerenkov Luminescence Imaging, ChIA-PET, ChIP-PCR, ChIP-Seq, ChIP-qPCR assay, Chemiluminescent Assay, Chemotaxis Assay, Circular Dichroism Spectroscopy, Co-Immunoprecipitation, Co-culture Assay, Collision-Induced Dissociation, Colorimetric Cell Viability Assay, Computational Modeling, Computational Tool, Computed Tomography, Confocal Microscopy, Confocal Reflectance Quantitative Phase Microscopy, Cross-Linking Immunoprecipitation High-throughput Sequencing, Cross-Linking Mass Spectrometry, Cyclic Immunofluorescence, Cytochemical Stain, Cytokine Expression Profile, Cytometric Bead Array Assay, Cytotoxicity Assay, DBiT-Seq, DNA Gene-Expression Microarray, DNA Methylation Array, DNA Sequencing, DNase-Seq, DRIP-seq, Dark Field Microscopy, Deep Mutational Scanning, Desorption Electrospray Ionization, Dideoxy Chain Termination DNA Sequencing, Differential Interference Contrast Microscopy, Differential Scanning Fluorimetry, Diffusion Weighted Imaging, Direct Long-Read RNA Sequencing, Drop-Seq, Droplet Digital PCR, Dual-Luciferase Reporter Assay, Dye Endocytosis Assay, Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Dynamic Force Spectroscopy, Dynamic Light Scattering, Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging, ELISA, Efferocytosis Assay, Electron Diffraction, Electron Microscopy, Electron Paramagnetic Resonance Spectroscopy, Electrophoretic Mobility Shift Assay, Electrospray Ionization Time-of-Flight Mass Spectrometry, Endotoxin Assay, Energy-Dispersive X-Ray Spectroscopy, Enzyme Activity Assay, Enzyme-Linked Immunospot Assay, Epidemiological Method, FAIRE-Seq, FISH, Flow Cytometry, Fluorescence Activated Cell Sorting, Fluorescence Correlation Spectroscopy, Fluorescence Imaging, Fluorescence Lifetime Imaging Microscopy, Fluorescence Microscopy, Fluorescence Recovery After Photo-Bleaching, Fluorescent Antibody Procedure, Fluorescent Cell Barcoding, Fluorescent In Situ Sequencing , Focused Ion Beam Scanning Electron Microscopy, Forster Resonance Energy Transfer, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Fourier-Transform Infrared Spectroscopy, Gas Chromatography Mass Spectrometry, Gelatin Zymography, Genotyping, Global Chromatin Profiling, Global Run-On Sequencing, Graphite Furnace Atomic Absorption Spectrometry, HL-Chip, HPLC-MSMS, Hematoxylin and Eosin Staining Method, Hi-C, HiChIP, High Throughput Screening, High-Content Screen, Hydrogels, Hydrophilic Interaction Chromatography, Image Cytometry, Imaging, Immobilized Metal Affinity Chromatography, ImmunoFISH, Immunoassay, Immunocytochemistry, Immunohistochemistry Staining Method, Immunoprecipitation, In Situ Hybridization, In Vitro Cell Killing Assay, In Vitro Model, In Vitro Selection, In Vitro Translation, In Vivo Bioluminescence, In-Cell Western Assay, Inductively-Coupled Plasma Mass Spectrometry, Interference Reflection Microscopy, Intravital Microscopy, Invasion Assay, Karyotyping, Knife-Edge Scanning Microscopy, L1000 mRNA Profiling Assay, Lattice Light Sheet Microscopy, Liquid Chromatography Mass Spectrometry, Liquid Chromatography/Tandem Mass Spectrometry, Low-Vacuum Scanning Electron Microscopy, Luciferase Reporter Assay, Luminescent Cell Viability Assay, MALDI-TOF Mass Spectrometry, MEMA Cell Growth Assay, MNase-Seq, MULTI-Seq, Macrophage Polarization Assay, Magnetic Resonance Imaging, Magnetic Tweezers, Magnetic Twisting Cytometry, Magnetically Activated Cell Sorting, Mammosphere Formation Assay, Mass Cytometry, Mass Spectrometry, Mathematical Modeling, MeDIP, MeRIP-Seq, Methyl Binding Domain Sequencing, Methylation-Specific PCR, Micro-computed Tomography, MicroRNA Expression Array, MicroRNA Sequencing, Microcontact Printing, Microfluidics, Micropipette Adhesion Assay, Micropipette Aspiration, Microscopy, Migration Assay, Mint-ChIP, Modeling, Molecular Simulations, Monolayer Stress Microscopy, Multi-Angle Light Scattering, Multi-Isotope Mass Spectrometry, Multiparametric Magnetic Resonance Imaging, Multiphoton Microscopy, Multiplexed Error-Robust Fluorescence In Situ Hybridization, Multiplexed Immunofluorescence, Multiplexed Immunohistochemistry, Multiplexed Ion Beam Imaging, Murine Model, Nano-hmC-Seal, NanoString Digital Spatial Profiling, Nanopatterning, Nanopore Sequencing, Nanowire, Nested PCR, Next Generation Sequencing, Nm-seq, Not Applicable, Nuclear Magnetic Resonance, Optical Coherence Tomography, Optical Emission Spectroscopy, Optical Mapping, Optical Stretcher, Optical Tweezers, Optogenetic Assay, Organoid, PCR, PET-CT, Paraquat Survival Assay, Partial Wave Spectroscopy, Patient Derived Xenograft, Pending Annotation, Permeability Assay, Phagocytosis Assay, Photoacoustic Imaging, Photolithography, Plasmid Construction, PlateSeq, Point Accumulation for Imaging in Nanoscale Topography, Positron Emission Tomography, Precision Run-On Sequencing, Proteomics Assay, Proximity Ligation Assay, Pull-Down Assay, QFISH, Quantitative Multiplex Immunofluorescence, Quantitative Point Accumulation for Imaging in Nanoscale Topography, Questionnaire, RAS Protein Family Activation Assay, RIP, RIP-Seq, RNA Sequencing, RNAi Screen, RT-PCR, RT-qPCR, Raman Spectroscopy, Reduced Representation Bisulfite Sequencing, Reverse Phase Protein Array, Reverse-Phase High-Performance liquid Chromatography, Rheometry, Ribo-Seq, Ribosomal P Protein Antibody Measurement, Scanning Angle Interference Microscopy, Scanning Electron Microscopy, Second-Harmonic Imaging Microscopy, Shotgun Mass Spectrometry, Single Cell ATAC-Seq, Single Cell Cytokine Detection Chip Assay, Single Cell DNA Sequencing, Single Cell Gel Electrophoresis, Single Cell RNA-Sequencing, Single Molecule Forster Resonance Energy Transfer, Single Nucleotide Polymorphism Array, Single Nucleus RNA-Sequencing, Single-Cell BCR Sequencing, Single-Cell Barcode Chip, Single-Cell TCR Sequencing, Single-Molecule Tracking, Sirius Red Staining, Size Exclusion Chromatography, Small-Angle X-ray Scattering, Soft Agar Assay, Southern Blotting, Spectroscopy, Statistical Modeling, Stimulated Emission Depletion Microscopy, Stimulated Raman Scattering, Stochastic Optical Reconstruction Microscopy, Super-Resolution Microscopy, Surface Plasmon Resonance, Surveyor Nuclease Assay, Synaptophysin Staining Method, Synthetic Genetic Array, TAB-Seq, TCR Sequencing, TIRF Microscopy, TRAP Staining, TUNEL assay, Tandem Mass Spectrometry, Tandem Mass Tagging, Target Engagement Assay, Targeted Genome Sequencing, Targeted Transcriptome Sequencing, Thermal Shift Assay, Thin-Layer Chromatography, Tiling Array, Time Lapse Microscopy, Time-Correlated Single Photon Counting, Tissue Engineering, Tissue Microarray, Total Internal Reflection Fluorescence Microscopy, Traction Force Microscopy, Transmission Electron Microscopy, Transwell Assay, UPLC-MSMS, UV Photocrosslinking, Unspecified, Vibrational Spectroscopy, Virus Plaque Assay, Von Kossa Staining, Western Blotting, Whole Exome Sequencing, Whole Genome Bisulfite Sequencing, Whole Genome Sequencing, Widefield Fluorescence Microscopy, Wound-Healing Assay, X-Ray Crystallography, X-Ray Diffraction, X-Ray Micro-Computed Tomography, Xenograft, cDNA Array, eCLIP-Seq, mRNA Sequencing, qPCR, scCGI-seq, scNT-Seq, scSLAM-seq, seqFISH, shRNA, siRNA, smFISH, smRNA-seq, snRNA-seq, Isothermal Titration Calorimetry, Suspended Microchannel Resonator, 10x Multiome, Visium Spatial Gene Expression, Antitumor Drug Screening Assay, Bioelectrochemical Analysis, Chimeric Antigen Receptor T-Cell Therapy, Cell Cycle Assay, Clonality Analysis, Comparative Genomic Hybridization, Cryo-Electron Microscopy, Cryo-Electron Tomography, Data Integration, Field-Emission Scanning Electron Microscopy, Label-free Protein Quantification by LC/MS, Metabolite Profiling Assay, Reporter Gene Assay, Single-Molecule Localization Microscopy, Synthesis, Targeted Therapy Agent, Trichrome Staining Method, Ultrasound Imaging, Transcription profiling by NanoString, Alcian Blue Staining Method, Artificial Intelligence, Cell Culture, Clinical Study, Cell-free Circulating Tumor DNA Assay, Co-Immunoprecipitation Mass Spectrometry, Deep Learning, Fluorescent In Situ Sequencing, Gene Ontology Enrichment Analysis, Gene Set Enrichment Analysis, Gene Silencing , Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture, Imaging Mass Cytometry, Immunofluorescent Staining Method, Immunotherapy, Viral Transduction, Metastatic Colonization Assay, Phylogenetic Analysis, Picrosirius Staining, Scratch Assay, Structural Variant Analysis, Survival Analysis, Targeted Error Correction Sequencing, Tuba-Seq, SDS-PAGE, Cell Fractionation, Multiscale Light Sheet Microscopy, Light Sheet Microscopy, CODEX",,TRUE,,,,,list like +DSP Dataset Species,"The species the data was collected on. Multiple values permitted, comma separated.","African Bush Elephant, Armadillo, Asian Elephant, Boar, Cat, Chicken, Cow, Dog, Escherichia coli, Guinea Pig, Horse, Human, Human Patient, Human Cell Line, Mouse, Multispecies, Not Applicable, Opossum, Rabbit, Rat, Rhesus monkey, Sheep, Trichoplax adhaerens, Unknown, Unspecified, Worm, Yeast, Fruit Fly, Zebrafish",,TRUE,,,,,list like DSP Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on. Multiple values permitted, comma separated.","Cutaneous Melanoma, Acinar Cell Carcinoma, Acute Lymphoblastic Leukemia, Acute Monocytic Leukemia, Acute Myeloid Leukemia, Acute Promyelocytic Leukemia, Adenocarcinoma, Angiosarcoma, Astrocytoma, Atypical Teratoid/Rhabdoid Tumor, B Acute Lymphoblastic Leukemia, B-Cell Non-Hodgkin Lymphoma, Barrett Esophagus, Basal Cell Neoplasm, Basal-Like Breast Carcinoma, Biliary Tract Carcinoma, Bladder Carcinoma, Bladder Neoplasm, Bone Neoplasm, Brain Neoplasm, Breast Adenocarcinoma, Breast Carcinoma, Breast Neoplasm, Carcinoma, Carcinoma In Situ, Castration-Resistant Prostate Carcinoma, Cellular Schwannoma, Central Nervous System Cavernous Hemangioma, Central Nervous System Neoplasm, Cerebellar Neoplasm, Cervical Carcinoma, Cervical Neoplasm, Cervical Small Cell Carcinoma, Cholangiocarcinoma, Chondroblastoma, Choriocarcinoma, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Clear Cell Renal Cell Carcinoma, Colon Adenocarcinoma, Colon Carcinoma, Colorectal Adenocarcinoma, Colorectal Adenoma, Colorectal Carcinoma, Colorectal Neoplasm, Combined Hepatocellular Carcinoma and Cholangiocarcinoma, Craniopharyngioma, Cutaneous T Cell Lymphoma, Diffuse Large B-Cell Lymphoma, Ductal Breast Carcinoma In Situ, Dysembryoplastic Neuroepithelial Neoplasm, Endometrial Carcinoma, Endometrial Neoplasm, Ependymoma, Esophageal Adenocarcinoma, Esophageal Carcinoma, Esophageal Squamous Cell Carcinoma, Ewing Sarcoma, Extraventricular Neurocytoma, Fibroepithelial Polyp, Fibrolamellar Carcinoma, Fibrosarcoma, Follicular Lymphoma, Gallbladder Carcinoma, Gastric Adenocarcinoma, Gastric Carcinoma, Gastric Neoplasm, Gastroesophageal Adenocarcinoma, Gastroesophageal Junction Adenocarcinoma, Gastrointestinal Stromal Neoplasm, Giant Cell Tumor, Glioblastoma, Glioma, Head and Neck Carcinoma, Head and Neck Neoplasm, Head and Neck Squamous Cell Carcinoma, Hepatocellular Carcinoma, High Grade Ovarian Serous Adenocarcinoma, Histiocytic Sarcoma, Hodgkin Lymphoma, Intestinal Neoplasm, Intrahepatic Cholangiocarcinoma, Invasive Ductal Breast Carcinoma, Kaposi Sarcoma, Leiomyoma, Leukemia, Liver and Intrahepatic Bile Duct Carcinoma, Liver and Intrahepatic Bile Duct Neoplasm, Low Grade Glioma, Luminal A Breast Carcinoma, Lung Adenocarcinoma, Lung Carcinoma, Lung Neoplasm, Lung Non-Small Cell Carcinoma, Lung Small Cell Carcinoma, Lung Squamous Cell Carcinoma, Lymphoid Leukemia, Lymphoma, Malignant Brain Neoplasm, Malignant Digestive System Neoplasm, Malignant Genitourinary System Neoplasm, Malignant Glioma, Malignant Neoplasm, Malignant Ovarian Neoplasm, Malignant Pancreatic Neoplasm, Malignant Peripheral Nerve Sheath Tumor, Malignant Peritoneal Neoplasm, Malignant Skin Neoplasm, Mantle Cell Lymphoma, Marginal Zone Lymphoma, Medulloblastoma, Melanoma, Meningioma, Mesothelioma, Multiple Myeloma, Mycosis Fungoides, Myeloid Leukemia, Myeloid Neoplasm, Myeloproliferative Neoplasm, Myoepithelioma, Nasopharyngeal Carcinoma, Neuroblastoma, Neuroendocrine Neoplasm, Neuroepithelial Neoplasm, Neurofibroma, Non-Functioning Pituitary Gland Adenoma, Non-Hodgkin Lymphoma, Not Applicable, Oral Cavity Neoplasm, Oral Cavity Squamous Cell Carcinoma, Oropharyngeal Neoplasm, Osteosarcoma, Ovarian Adenosarcoma, Ovarian Carcinoma, Ovarian Neoplasm, Ovarian Serous Adenocarcinoma, Pan-cancer, Pancreatic Adenocarcinoma, Pancreatic Carcinoma, Pancreatic Ductal Adenocarcinoma, Pancreatic Neoplasm, Pancreatic Neuroendocrine Carcinoma, Pending Annotation, Penile Carcinoma, Pheochromocytoma, Pilocytic Astrocytoma, Pituitary Gland Adenoma, Plasmablastic Lymphoma, Plasmacytoma, Plexiform Schwannoma, Precursor B-cell lymphoblastic leukemia, Primary Central Nervous System Lymphoma, Primary Myelofibrosis, Prostate Adenocarcinoma, Prostate Carcinoma, Prostate Neoplasm, Rectal Adenocarcinoma, Renal Cell Carcinoma, Retinoblastoma, Rhabdomyosarcoma, Rosette-Forming Glioneuronal Tumor, Salivary Gland Adenoid Cystic Carcinoma, Sarcoma, Schwannoma, Serous Tubal Intraepithelial Carcinoma, Sinonasal Squamous Cell Carcinoma, Skin Carcinoma, Skin Neoplasm, Soft Tissue Sarcoma, Squamous Cell Carcinoma, Synovial Sarcoma, T Acute Lymphoblastic Leukemia, T-Cell Lymphoma, Teratoma, Testicular Embryonal Carcinoma, Thyroid Gland Anaplastic Carcinoma, Thyroid Gland Carcinoma, Thyroid Gland Noninvasive Follicular Neoplasm with Papillary-Like Nuclear Features, Triple-Negative Breast Carcinoma, Urothelial Carcinoma, Uterine Adenosarcoma, Uveal Melanoma, Uveal Neoplasm, Vascular Neoplasm, Not-Applicable, Plexiform Neurofibroma",,FALSE,,,,,list like DSP Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,FALSE,,,,,list like -DSP Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DAE, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation, maf, CLS, SCN, SVS",,FALSE,,,,,list like +DSP Dataset File Formats,"The list of extensions (e.g., csv, fastq, geojson, qpath, etc.) associated with files that should be included in the dataset. Multiple values permitted, comma separated.",,,FALSE,,,,,list like DataDSP_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique DSP Dataset Level,The level of processing associated with the dataset.,"Level 1, Level 2, Level 3, Level 4, Auxiliary, Not Applicable, Metadata",,FALSE,,,,,list like DSP Number of Files,The number of files that will be uploaded as part of this dataset.,,,FALSE,,,,,num @@ -448,27 +477,31 @@ DSP Number of Participants,The number of individuals or model organisms from whi DSP Storage Size,The expected total storage space required for the dataset in gigabytes (GB),,,FALSE,,,,,num DSP Planned Upload Date,"A non-binding, estimated date by which the files are expected to be uploaded to a repository.",,,TRUE,,,,,date DSP Planned Release Date,The projected date that marks the end of any requested or required sharing embargo for the dataset.,,,FALSE,,,,,date -DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +DSP Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like DSP Dataset Url,"The url where the dataset is or will be stored. For Synapse storage, the Synapse url or doi associated with the dataset storage folder should be used.",,,FALSE,,,,,url DSP Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes ","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like DSP IRB Form,The Synapse Id for the executed IRB protocol or exemption document that was uploaded to Synapse. Required if human-derived data was generated for this study and will be uploaded as part of this dataset,,,FALSE,,,,,regex match syn\d+ DSP Dataset Description,A text description of the files contained in this dataset.,,,FALSE,,,,,str DSP Dataset Destination,An identifier representing the repository in which this dataset is intended to be held for long term preservation.,,,FALSE,,,,,str DSP Dataset Metadata,The link(s) corresponding to metadata templates that should be used to record information about this data. This field will be populated by the MC2 Center after plan submission.,,,FALSE,,,,,list like -Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License",FALSE,,,Grant View,, +Study,Studies associated with a grant,,"Component, Study_id, GrantView Key, ProjectView Key, Study dbGaP Accession Id, Study Name, Study Description, Study Investigator, PersonView Key, Study Number of Participants, Study Number of Samples, Study De-identification Method Type, Study De-identification Method Description, Study De-identification Method Software, Study Index Date, Study Reuse Statement, Study Data Use Codes, Study License, Study Source Geography, Study Data Permission, Study Data Tier",FALSE,,,Grant View,, Study Name,Name of the study,,,TRUE,,,,,str -Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, etc.",,,TRUE,,,,,str +Study Description,"Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.",,,TRUE,,,,,str Study Investigator,Investigator(s) associated with the project. Multiple names should be provided as a comma-separated list.,,,TRUE,,,,,list like -Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).",,,FALSE,,,,,str +Study Reuse Statement,"The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.",,,FALSE,,,,,str Study_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Study Number of Participants,The number of participant instances associated with systematic investigation into a subject. ,,,TRUE,,,,CDS/collection,int -Study De-identification Method Type,General description of the de-identification method,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, +Study Number of Participants,The number of participant instances associated with systematic investigation into a subject.,,,TRUE,,,,CDS/collection,int +Study De-identification Method Type,General description of the de-identification method. Maps to DUOplus3.,"Manual, Semiautomatic, Automatic, Not Applicable",,TRUE,,,,CDS/collection, Study De-identification Method Description,Description of the process of removing potentially identifying data or data elements to render data into a form that does not identify individuals and where identification is not likely to take place.,,,FALSE,,,,CDS/collection,str -Study De-identification Method Software,Software that was used to de-identify the images (if used),,,FALSE,,,,CDS/collection,str +Study De-identification Method Software,Software that was used to de-identify the data (if used),,,FALSE,,,,CDS/collection,str Study dbGaP Accession Id,A stable unique alphanumeric identifier assigned to a study and any objects by the database of Genotypes and Phenotypes (dbGaP). Required for controlled access data being submitted to CDS/CRDC.,,,FALSE,,,,CDS/collection,str -Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0",,FALSE,,,,CDS/collection, -Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology, list like +Study License,Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.,"CC BY 3.0, CC BY 4.0, CC BY-NC 4.0, CC BY-NC 3.0, CC BY-SA 4.0, CC BY-NC-SA 4.0",,FALSE,,,,CDS/collection, +Study Data Use Codes,"DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes","IRB, HMB, PUB, US, NPOA, COL, NCU, NPUNCU, RS, TS, NRES, NPU, DUM, POA, MOR, GSO, RTN, CC, NMDS, IS, GS, DS, GRU, PS",,FALSE,,,,Data Use Ontology,list like Study Index Date,"The reference event associated with timepoints in this study. One of Diagnosis Date, Enrollment Date, Collection Date, or Birth Date.","Diagnosis Date , Enrollment Date, Collection Date, Birth Date",,FALSE,,,,CDS v5.0.4/Study, +Study Source Geography,The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.,"AD, AE, AF, AG, AI, AL, AM, AO, AQ, AR, AS, AT, AU, AW, AX, AZ, BA, BB, BD, BE, BF, BG, BH, BI, BJ, BL, BM, BN, BO, BQ, BR, BS, BT, BV, BW, BY, BZ, CA, CC, CD, CF, CG, CH, CI, CK, CL, CM, CN, CO, CR, CU, CV, CW, CX, CY, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, EH, ER, ES, ET, FI, FJ, FK, FM, FO, FR, GA, GB, GD, GE, GF, GG, GH, GI, GL, GM, GN, GP, GQ, GR, GS, GT, GU, GW, GY, HK, HM, HN, HR, HT, HU, ID, IE, IL, IM, IN, IO, IQ, IR, IS, IT, JE, JM, JO, JP, KE, KG, KH, KI, KM, KN, KP, KR, KW, KY, KZ, LA, LB, LC, LI, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MF, MG, MH, MK, ML, MM, MN, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, NA, NC, NE, NF, NG, NI, NL, NO, NP, NR, NU, NZ, OM, PA, PE, PF, PG, PH, PK, PL, PM, PN, PR, PS, PT, PW, PY, QA, RE, RO, RS, RU, RW, SA, SB, SC, SD, SE, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SR, SS, ST, SV, SX, SY, SZ, TC, TD, TF, TG, TH, TJ, TK, TL, TM, TN, TO, TR, TT, TV, TW, TZ, UA, UG, UM, US, UY, UZ, VA, VC, VE, VG, VI, VN, VU, WF, WS, YE, YT, ZA, ZM, ZW",,FALSE,,,,DUOplus,list like +Study Data Permission,The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.,"Agreement, Attestation, Award, Other",,FALSE,,,,DUOplus,list like +Study Data Tier,The access tier(s) associated with the data in this study. Maps to DUOplus5.,"Anonymous, Open, Controlled, Private",,FALSE,,,,DUOplus,list like +Study Number of Samples,The number of specimens associated with systematic investigation into a subject.,,,TRUE,,,,GC v6.0.2/study.number_of_samples,int Theme,Themes associated with resources derived from consortia activities,,"Component, Theme Name, Theme Display Name, Theme Description",FALSE,,,,, Theme Name,"Machine readable name of the research theme. (e.g. compuational_resource, drug_resistance_sensitivity).",,,TRUE,,,,, Theme Display Name,"Human readable display name of the research theme. (e.g. Computational Resource, Drug Resistance/Sensitivity)",,,TRUE,,,,, @@ -490,7 +523,7 @@ Tool Entity Name,Name of the entities that may be credited,,,FALSE,,,,,list like Tool Entity Role,"Role performed by entity that is credited, e.g. β€œDeveloper”","Developer, Maintainer, Provider, Documentor, Contributor, Support, Primary Contact",,TRUE,,,,biotoolsschema,list like Tool Entity Type,"Types of entities that may be credited, e.g. β€˜Person’.","Person, Project, Division, Institute, Research Consortium, Funding Agency",,TRUE,,,,biotoolsschema,list like Tool Function Note,"Concise comment about this function, if not apparent from the software description and EDAM annotations.",,,FALSE,,,,biotoolsschema, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Tool Homepage,"Homepage of the software, or some URL that best serves this purpose.",,,TRUE,,,,biotoolsschema,url Tool Input Data,"Type of primary input data. Multiple values permitted, comma separated.","Accession, Alignment, Biological Model ID, Biological Model Name, Cell Line Name, Cell Migration Track Image, Cell Type Identifier, Cell Type Name, Cell Type Ontology ID, Chromosome Name, Chromosome Report, Clustered Expression Profiles, Codon Number, Comparison Matrix, Compound Identifier, Compound Name, Concentration, Count Matrix, DNA Sequence, Data Index, Data Reference, Database Search Results, Drug Identifier, Drug Name, Drug Report, Electronic Health Record, Enzyme Kinetics Data, Experimental Measurement, Expression Data, GO-Term Enrichment Data, Gene Expression Matrix, Gene Expression Profile, Gene ID, Gene ID (NCBI), Gene Identifier, Gene Name, Gene Report, Gene Symbol, Gene Tree, Genetic Map, Genotype/Phenotype Report, Heat Map, Hidden Markov Model, Hierarchy, Histogram, Identifier, Image, Image Metadata, Kinetic Model, MRI Image, Map, Map Data, Mass Spectrometry Data, Mass Spectrum, Mathematical Model, Matrix, Molecular Property, Molecular Simulation Data, Molecule Identifier, Molecule Name, Morphology Parameter, Mutation ID, Not Applicable, Nucleic Acid Identifier, Nucleic Acid Report, Nucleic Acid Sequence, Ontology, Ontology Concept Data, Ontology Data, Ontology Identifier, Ontology Mapping, Ontology Name, Ontology Term, Organism Identifier, Organism Name, Over-Represesntation Data, P-Value, Pair Sequence Alignment, Pathway Or Network, Pathway Or Network Report, Pathway Overrepresentation Data, Peptide Identification, Peptide Property, Phenotype Name, Phylogenetic Data, Phylogenetic Tree, Plain Text, Plot, Position Weight Matrix, Position-Specific Scoring Matrix, Protein Contact Map, Protein Identifier, Protein Interaction Data, Protein Name, Protein Property, Protein Report, Protein Sequence, Protein Structure Report, Quality Control Report, RNA Sequence, Raw Image, Reaction Data, RefSeq Accession, Report, Resource Metadata, Sample Annotation, Sample ID, Score, Sequence, Sequence Alignment, Sequence Attribute, Sequence Cluster, Sequence Composition Plot, Sequence Composition Report, Sequence Coordinates, Sequence Features, Sequence Image, Sequence Motif, Sequence Position, Sequence Property, Sequence Range, Sequence Record, Sequence Report, Sequence Search Results, Sequence Set, Sequence Signature Data, Sequence Similarity, Sequence Similarity Score, Sequence Variations, Simulation, Small Molecule Report, Spectrum, Statistical Estimate Score, Strain Identifier, Strain Name, Structure, Structure Report, Taxonomy, Text Data, Text Mining Report, Topology Data, Training Material, Trajectory Data, Transcription Factor Identifier, Transcription Factor Name, Vmax, dbSNP ID",,TRUE,,,,biotoolsschema,list like Tool Input Format,"Allowed format(s) of the input data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like @@ -506,7 +539,7 @@ Tool Output Data,"Type of primary output data. Multiple values permitted, comma Tool Output Format,"Allowed format(s) of the output data. Multiple values permitted, comma separated.","Alignment Format, Alignment Format (Pair Only), Alignment Format (Text), Annotated Text Format, Antimony, BAM, BCF, BED, BLAST Results, BNGL, Binary Format, Biological Model Format, Biological Pathway Or Network Format, CSV, Chemical Data Format, Cytoband Format, Cytoscape Input File Format, DCC, DCD, DSV, Database Hits (Sequence) Format , Docker Image Format, Document Format, Dot-Bracket Format, FASTA, FASTQ, FASTQ-Illumina, FCS, GCT/Res Format, GFF, GFF3, GIF, GML, GTF, Gene Annotation Format, Gene Cluster Format, Gene Expression Report Format, Genotype And Phenotype Annotation Format, Graph Format, H5AD, HDF, HDF5, HTML, Hidden Markov Model Format, Image Format, Individual Genetic Data Format, JPG, JSON, LSM, MAF, MAGE-ML, MAGE-TAB, MAT, MATLAB Script, MSF, Map Format, Mass Spectrometry Data Format, Matrix Format, NIFTI Format, Nexus Format, Not Applicable, NumPy Format, OME-TIFF, Ontology Format, PDF, PNG, PS, PSF, Phylip Format, Phylip Format Variant, Phylogenetic Tree Format, Phylogenetic Tree Format (Text), Protein Interaction Format, Python Script, R File Format, R Script, RDS, RNA Annotation Format, RNA Secondary Structure Format, RPKM, Raw Sequence Format, SAM, SBML, SQLite Format, SVG, Scores Format, Sequence Annotation Track Format, Sequence Cluster Format, Sequence Cluster Format (Protein), Sequence Feature Annotation Format, Sequence Feature Table Format, Sequence Feature Table Format (Text), Sequence Profile Format, Sequence Range Format, Sequence Record Format, Sequence Trace Format, Sequence Variation Annotation Format, TIFF, TSV, TXT, Tertiary Structure Format, Textual Format, Topology Format, Trajectory Format, VCF, Workflow Format, XML, YAML, bedgraph, bigWig, cel, imzML Metadata File, mzML, nii, pkl, sif, xls, xlsx, PDB, HED, MRC, Unspecified",,TRUE,,,,biotoolsschema,list like Tool Package Dependencies,"Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment",,,FALSE,,,,CWL,list like Tool Package Dependencies Present,Indicates whether the required package dependencies for tool are present.,"True, False",,TRUE,,,,CWL, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451, CA284085, CA283749, CA289564, CA293470, CA279722, CA290115, CA279948, CA281216, CA292382, CA290442, CA293853",,TRUE,,,,,list like Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int Tool Release Date,The release date of a product or product model. This can be used to distinguish the exact variant of a product.,,,TRUE,,,,schema.org,date Tool Topic,"General scientific domain the software serves, or other general category. Multiple values permitted, comma separated.","Allergy Clinical Immunology and Immunotherapeutics, Biochemistry, Bioimaging, Bioinformatics, Biological Databases, Biology, Biomedical Science, Biomolecular Simulation, Biophysics, Biotechnology, Biotherapeutics, Cell Biology, Cell Culture Collection, Chemistry, Chip-Seq, Chromosome Conformation Capture, Comparative Genomics, Compound Libraries and Screening, Computational Biology, Computer Science, Cytogenetics, Cytometry, DNA, DNA Mutation, DNA Packaging, DNA Polymorphism, Data Architecture Analysis and Design, Data Identity and Mapping, Data Mining, Data Submission Annotation and Curation, Data Visualisation, Developmental Biology, Drug Development, Drug Discovery, Drug Metabolism, Electron Microscopy, Epigenetics, Evolutionary Biology, Exome Sequencing, Experimental Design and Studies, Function Analysis, Functional Genomics, Functional Regulatory and Non-Coding RNA, GWAS Study, Gene Expression, Gene Regulation, Gene Structure, Gene Transcripts, Gene and Protein Families, Genetic Engineering, Genetic Variation, Genetics, Genomics, Genotype and Phenotype, Imaging, Immunoinformatics, Immunology, Immunomics, Immunoprecipitation Experiment, Immunoproteins and Antigens, Infectious Disease, Informatics, Laboratory Techniques, Light Microscopy, Lipids, Machine Learning, Mapping, Mathematics, Medical Imaging, Medical Informatics, Medicine, Medicines Research and Development, Membrane and Lipoproteins, Metagenomics, Molecular Biology, Molecular Genetics, Molecular Interactions Pathways and Networks, Nucleic Acid Structure Analysis, Nucleic Acids, Omics, Oncology, Ontology and Terminology, Pathology, Pharmacogenomics, Pharmacology, Pharmacovigilance, Phylogenetics, Phylogenomics, Phylogeny, Preclinical and Clinical Studies, Probes and Primers, Protein Expression, Protein Modifications, Protein Properties, Proteins, Proteomics, Proteomics Experiment, RNA, RNA-Seq, Safety Sciences, Sample Collections, Sequence Analysis, Sequencing, Simulation Experiment, Software Engineering, Statistics and Probability, Structural Analysis, Structural Biology, Systems Biology, Transcription Factors and Regulatory Sites, Transcriptomics, Virology, Whole Genome Sequencing, Workflows, scRNA-Seq",,FALSE,,,,biotoolsschema,list like diff --git a/qc_model/mc2_qc.model.jsonld b/qc_model/mc2_qc.model.jsonld index 73ec7559..1709a233 100644 --- a/qc_model/mc2_qc.model.jsonld +++ b/qc_model/mc2_qc.model.jsonld @@ -55,6 +55,9 @@ { "@id": "bts:BiospecimenType" }, + { + "@id": "bts:BiospecimenTumorStatus" + }, { "@id": "bts:BiospecimenAcquisitionMethod" }, @@ -127,6 +130,9 @@ { "@id": "bts:BiospecimenCollectionSite" }, + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:BiospecimenTherapeuticAgent" }, @@ -506,6 +512,40 @@ } ], "sms:displayName": "Biospecimen Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BiospecimenTumorStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Normal or Tumor Sample Pathology Indicator", + "rdfs:label": "BiospecimenTumorStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Tumor" + }, + { + "@id": "bts:Normal" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:Peritumoral" + }, + { + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Biospecimen Tumor Status", "sms:required": "sms:true", "sms:validationRules": [] }, @@ -704,6 +744,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -13879,6 +13922,117 @@ "str" ] }, + { + "@id": "bts:BiospecimenTreatmentType", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the kind of treatment administered.", + "rdfs:label": "BiospecimenTreatmentType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:3-DimensionalConformalRadiationTherapy" + }, + { + "@id": "bts:AllogeneicHematopoieticStemCellTransplantation" + }, + { + "@id": "bts:AutologousStemCellTransplantation" + }, + { + "@id": "bts:Brachytherapy" + }, + { + "@id": "bts:CellularTherapy" + }, + { + "@id": "bts:Chemotherapy" + }, + { + "@id": "bts:ConcurrentChemoradiation" + }, + { + "@id": "bts:ConventionalRadiotherapy" + }, + { + "@id": "bts:ElectronBeamRadiationTherapy" + }, + { + "@id": "bts:ExternalBeamRadiationTherapy" + }, + { + "@id": "bts:High-DoseRateBrachytherapy" + }, + { + "@id": "bts:HormoneTherapy" + }, + { + "@id": "bts:Immunotherapy" + }, + { + "@id": "bts:Intensity-ModulatedRadiationTherapy" + }, + { + "@id": "bts:Low-DoseRateBrachytherapy" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:OrganTransplantation" + }, + { + "@id": "bts:PalliativeCare" + }, + { + "@id": "bts:Pharmacotherapy" + }, + { + "@id": "bts:PhotonBeamRadiationTherapy" + }, + { + "@id": "bts:ProtonBeamRadiationTherapy" + }, + { + "@id": "bts:RadiationTherapy" + }, + { + "@id": "bts:RadiofrequencyAblation" + }, + { + "@id": "bts:Radiopharmaceutical" + }, + { + "@id": "bts:StemCellTransplant" + }, + { + "@id": "bts:StereotacticBodyRadiationTherapy" + }, + { + "@id": "bts:StereotacticRadiosurgery" + }, + { + "@id": "bts:SurgicalProcedure" + }, + { + "@id": "bts:TargetedMolecularTherapy" + }, + { + "@id": "bts:Unknown" + } + ], + "sms:displayName": "Biospecimen Treatment Type", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, { "@id": "bts:BiospecimenTherapeuticAgent", "@type": "rdfs:Class", @@ -27559,6 +27713,9 @@ }, { "@id": "bts:IndividualLastKnownDiseaseStatus" + }, + { + "@id": "bts:IndividualVitalStatus" } ], "sms:validationRules": [] @@ -27617,9 +27774,6 @@ { "@id": "bts:ModelSiteofOrigin" }, - { - "@id": "bts:ModelTumorType" - }, { "@id": "bts:ModelTumorSubtype" }, @@ -28956,6 +29110,9 @@ { "@id": "bts:IndividualRecurrenceStatus" }, + { + "@id": "bts:IndividualVitalStatus" + }, { "@id": "bts:BiospecimenLastKnownDiseaseStatus" }, @@ -29013,6 +29170,12 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:BiospecimenFixative" + }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29026,10 +29189,10 @@ "@id": "bts:DSPDatasetSpecies" }, { - "@id": "bts:BiospecimenFixative" + "@id": "bts:IndividualTumorLymphNodeStage" }, { - "@id": "bts:IndividualTumorLymphNodeStage" + "@id": "bts:BiospecimenTreatmentType" }, { "@id": "bts:IndividualTreatmentType" @@ -29123,6 +29286,9 @@ { "@id": "bts:BiospecimenPathology" }, + { + "@id": "bts:NGSLibrarySourceMolecule" + }, { "@id": "bts:BiospecimenLastKnownDiseaseStatus" }, @@ -29141,6 +29307,9 @@ { "@id": "bts:ModelTreatmentResponse" }, + { + "@id": "bts:NGSLibrarySourceMaterial" + }, { "@id": "bts:IndividualMetastasisStage" }, @@ -29150,6 +29319,9 @@ { "@id": "bts:IndividualTumorGrade" }, + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:IndividualTreatmentType" }, @@ -29236,6 +29408,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29265,6 +29440,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29294,6 +29472,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29323,6 +29504,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29352,6 +29536,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29381,6 +29568,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29410,6 +29600,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29439,6 +29632,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29468,6 +29664,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29497,6 +29696,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29526,6 +29728,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29555,6 +29760,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29584,6 +29792,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29613,6 +29824,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29642,6 +29856,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29671,6 +29888,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29691,6 +29911,152 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:NotApplicable", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NotApplicable", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenPathology" + }, + { + "@id": "bts:BiospecimenTreatmentResponse" + }, + { + "@id": "bts:IndividualRecurrenceStatus" + }, + { + "@id": "bts:IndividualTreatmentResponse" + }, + { + "@id": "bts:ModelTreatmentResponse" + }, + { + "@id": "bts:StudyDe-identificationMethodType" + }, + { + "@id": "bts:BiospecimenLastKnownDiseaseStatus" + }, + { + "@id": "bts:FileLevel" + }, + { + "@id": "bts:IndividualLastKnownDiseaseStatus" + }, + { + "@id": "bts:DSPDatasetLevel" + }, + { + "@id": "bts:BiospecimenTumorGrade" + }, + { + "@id": "bts:ImageAssayType" + }, + { + "@id": "bts:IndividualTumorGrade" + }, + { + "@id": "bts:BiospecimenSpecies" + }, + { + "@id": "bts:Species" + }, + { + "@id": "bts:DatasetSpecies" + }, + { + "@id": "bts:FileSpecies" + }, + { + "@id": "bts:ModelSpecies" + }, + { + "@id": "bts:DSPDatasetSpecies" + }, + { + "@id": "bts:BiospecimenDiseaseType" + }, + { + "@id": "bts:IndividualDiseaseType" + }, + { + "@id": "bts:ModelDiseaseType" + }, + { + "@id": "bts:InstitutionLocationState" + }, + { + "@id": "bts:ToolInputFormat" + }, + { + "@id": "bts:ToolOutputFormat" + }, + { + "@id": "bts:ToolInputData" + }, + { + "@id": "bts:ToolOutputData" + }, + { + "@id": "bts:DatasetTissue" + }, + { + "@id": "bts:FileTissue" + }, + { + "@id": "bts:PublicationTissue" + }, + { + "@id": "bts:DSPDatasetTissue" + }, + { + "@id": "bts:ToolOperation" + }, + { + "@id": "bts:DatasetTumorType" + }, + { + "@id": "bts:FileTumorType" + }, + { + "@id": "bts:PublicationTumorType" + }, + { + "@id": "bts:DSPDatasetTumorType" + }, + { + "@id": "bts:BiospecimenPrimaryDiagnosis" + }, + { + "@id": "bts:IndividualPrimaryDiagnosis" + }, + { + "@id": "bts:ModelPrimaryDiagnosis" + }, + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Not Applicable", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Opossum", "@type": "rdfs:Class", @@ -29700,6 +30066,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29729,6 +30098,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29758,6 +30130,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29787,6 +30162,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29816,6 +30194,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29845,6 +30226,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29871,12 +30255,18 @@ "rdfs:comment": "TBD", "rdfs:label": "Unspecified", "rdfs:subClassOf": [ + { + "@id": "bts:IndividualVitalStatus" + }, { "@id": "bts:IndividualGender" }, { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29898,9 +30288,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:DatasetTissue" }, @@ -29919,6 +30306,9 @@ { "@id": "bts:ToolOutputFormat" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -29948,6 +30338,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -29977,6 +30370,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30006,6 +30402,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30035,6 +30434,9 @@ { "@id": "bts:BiospecimenSpecies" }, + { + "@id": "bts:Species" + }, { "@id": "bts:DatasetSpecies" }, @@ -30984,131 +31386,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:NotApplicable", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NotApplicable", - "rdfs:subClassOf": [ - { - "@id": "bts:BiospecimenPathology" - }, - { - "@id": "bts:BiospecimenTreatmentResponse" - }, - { - "@id": "bts:IndividualRecurrenceStatus" - }, - { - "@id": "bts:IndividualTreatmentResponse" - }, - { - "@id": "bts:ModelTreatmentResponse" - }, - { - "@id": "bts:StudyDe-identificationMethodType" - }, - { - "@id": "bts:BiospecimenLastKnownDiseaseStatus" - }, - { - "@id": "bts:FileLevel" - }, - { - "@id": "bts:IndividualLastKnownDiseaseStatus" - }, - { - "@id": "bts:DSPDatasetLevel" - }, - { - "@id": "bts:BiospecimenTumorGrade" - }, - { - "@id": "bts:ImageAssayType" - }, - { - "@id": "bts:IndividualTumorGrade" - }, - { - "@id": "bts:BiospecimenDiseaseType" - }, - { - "@id": "bts:IndividualDiseaseType" - }, - { - "@id": "bts:ModelDiseaseType" - }, - { - "@id": "bts:InstitutionLocationState" - }, - { - "@id": "bts:ToolInputFormat" - }, - { - "@id": "bts:ToolOutputFormat" - }, - { - "@id": "bts:ToolInputData" - }, - { - "@id": "bts:ToolOutputData" - }, - { - "@id": "bts:DatasetTissue" - }, - { - "@id": "bts:FileTissue" - }, - { - "@id": "bts:PublicationTissue" - }, - { - "@id": "bts:DSPDatasetTissue" - }, - { - "@id": "bts:ToolOperation" - }, - { - "@id": "bts:DatasetTumorType" - }, - { - "@id": "bts:FileTumorType" - }, - { - "@id": "bts:PublicationTumorType" - }, - { - "@id": "bts:DSPDatasetTumorType" - }, - { - "@id": "bts:BiospecimenPrimaryDiagnosis" - }, - { - "@id": "bts:IndividualPrimaryDiagnosis" - }, - { - "@id": "bts:ModelPrimaryDiagnosis" - }, - { - "@id": "bts:DatasetAssay" - }, - { - "@id": "bts:FileAssay" - }, - { - "@id": "bts:PublicationAssay" - }, - { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Not Applicable", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:NotOtherwiseSpecified", "@type": "rdfs:Class", @@ -31485,6 +31762,12 @@ }, { "@id": "bts:IndividualTumorGrade" + }, + { + "@id": "bts:CountryOfOrigin" + }, + { + "@id": "bts:StudySourceGeography" } ], "schema:isPartOf": { @@ -31708,6 +31991,9 @@ "rdfs:comment": "TBD", "rdfs:label": "Notreported", "rdfs:subClassOf": [ + { + "@id": "bts:IndividualVitalStatus" + }, { "@id": "bts:BiospecimenComposition" }, @@ -31885,6 +32171,9 @@ { "@id": "bts:BiospecimenComposition" }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -31905,40 +32194,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:BiospecimenTumorStatus", - "@type": "rdfs:Class", - "rdfs:comment": "Normal or Tumor Sample Pathology Indicator", - "rdfs:label": "BiospecimenTumorStatus", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Tumor" - }, - { - "@id": "bts:Normal" - }, - { - "@id": "bts:NotReported" - }, - { - "@id": "bts:Peritumoral" - }, - { - "@id": "bts:Unknown" - } - ], - "sms:displayName": "Biospecimen Tumor Status", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Peritumoral", "@type": "rdfs:Class", @@ -39345,6 +39600,9 @@ { "@id": "bts:ImageImmersionType" }, + { + "@id": "bts:StudyDataPermission" + }, { "@id": "bts:NGSReadIndicator" }, @@ -39354,9 +39612,6 @@ { "@id": "bts:ResourcePrimaryAudience" }, - { - "@id": "bts:NGSLibrarySource" - }, { "@id": "bts:ToolLinkType" }, @@ -87610,6 +87865,9 @@ "rdfs:comment": "TBD", "rdfs:label": "Chemotherapy", "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:IndividualTreatmentType" }, @@ -105809,6 +106067,9 @@ "rdfs:comment": "TBD", "rdfs:label": "HormoneTherapy", "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, { "@id": "bts:IndividualTreatmentType" }, @@ -200787,6 +201048,625 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:3-DimensionalConformalRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "3-DimensionalConformalRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "3-Dimensional Conformal Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AllogeneicHematopoieticStemCellTransplantation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AllogeneicHematopoieticStemCellTransplantation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Allogeneic Hematopoietic Stem Cell Transplantation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AutologousStemCellTransplantation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AutologousStemCellTransplantation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Autologous Stem Cell Transplantation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Brachytherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Brachytherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Brachytherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CellularTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CellularTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cellular Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ConcurrentChemoradiation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ConcurrentChemoradiation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Concurrent Chemoradiation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ConventionalRadiotherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ConventionalRadiotherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Conventional Radiotherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ElectronBeamRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ElectronBeamRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Electron Beam Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ExternalBeamRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ExternalBeamRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "External Beam Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:High-DoseRateBrachytherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "High-DoseRateBrachytherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "High-Dose Rate Brachytherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Immunotherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Immunotherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantThemeName" + }, + { + "@id": "bts:ResourceTopic" + }, + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + }, + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Immunotherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Intensity-ModulatedRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Intensity-ModulatedRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Intensity-Modulated Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Low-DoseRateBrachytherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Low-DoseRateBrachytherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Low-Dose Rate Brachytherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:OrganTransplantation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "OrganTransplantation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Organ Transplantation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PalliativeCare", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PalliativeCare", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Palliative Care", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Pharmacotherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Pharmacotherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pharmacotherapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PhotonBeamRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PhotonBeamRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Photon Beam Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ProtonBeamRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ProtonBeamRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Proton Beam Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:RadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "RadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:RadiofrequencyAblation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "RadiofrequencyAblation", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Radiofrequency Ablation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Radiopharmaceutical", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Radiopharmaceutical", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Radiopharmaceutical", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:StemCellTransplant", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "StemCellTransplant", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Stem Cell Transplant", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:StereotacticBodyRadiationTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "StereotacticBodyRadiationTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Stereotactic Body Radiation Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:StereotacticRadiosurgery", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "StereotacticRadiosurgery", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Stereotactic Radiosurgery", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SurgicalProcedure", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SurgicalProcedure", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Surgical Procedure", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:TargetedMolecularTherapy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "TargetedMolecularTherapy", + "rdfs:subClassOf": [ + { + "@id": "bts:BiospecimenTreatmentType" + }, + { + "@id": "bts:IndividualTreatmentType" + }, + { + "@id": "bts:ModelTreatmentType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Targeted Molecular Therapy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Collection", "@type": "rdfs:Class", @@ -201238,6 +202118,9 @@ "rdfs:subClassOf": [ { "@id": "bts:ConsortiumFundingAgency" + }, + { + "@id": "bts:Funder" } ], "schema:isPartOf": { @@ -201248,10 +202131,10 @@ "sms:validationRules": [] }, { - "@id": "bts:DatasetName", + "@id": "bts:Community", "@type": "rdfs:Class", - "rdfs:comment": "Name of the dataset", - "rdfs:label": "DatasetName", + "rdfs:comment": "The Sage Bionetworks project or initiative with which the dataset is associated.", + "rdfs:label": "Community", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -201260,15 +202143,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Name", - "sms:required": "sms:true", - "sms:validationRules": [] + "sms:displayName": "community", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:DatasetAlias", + "@id": "bts:Description", "@type": "rdfs:Class", - "rdfs:comment": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters.", - "rdfs:label": "DatasetAlias", + "rdfs:comment": "A text description of the dataset. Can be identifical to Dataset Description.", + "rdfs:label": "Description", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -201277,34 +202162,34 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Alias", - "sms:required": "sms:true", + "sms:displayName": "description", + "sms:required": "sms:false", "sms:validationRules": [ - "unique" + "str" ] }, { - "@id": "bts:DatasetDescription", + "@id": "bts:Contributor", "@type": "rdfs:Class", - "rdfs:comment": "Description of the dataset.", - "rdfs:label": "DatasetDescription", + "rdfs:comment": "TBD", + "rdfs:label": "Contributor", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:ToolEntityRole" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Description", + "sms:displayName": "Contributor", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DatasetDesign", + "@id": "bts:Keywords", "@type": "rdfs:Class", - "rdfs:comment": "The overall design of the dataset.", - "rdfs:label": "DatasetDesign", + "rdfs:comment": "Keywords associated with the dataset. Can be identical to Publication Keywords.", + "rdfs:label": "Keywords", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -201313,15 +202198,36 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Design", + "sms:displayName": "keywords", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Individuals", + "@type": "rdfs:Class", + "rdfs:comment": "The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants, DSP Number of Participants, or DSP Number of Samples", + "rdfs:label": "Individuals", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "individuals", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "int" + ] }, { - "@id": "bts:DatasetUrl", + "@id": "bts:Link", "@type": "rdfs:Class", - "rdfs:comment": "The url of where the dataset is stored.", - "rdfs:label": "DatasetUrl", + "rdfs:comment": "The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.", + "rdfs:label": "Link", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -201330,17 +202236,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Url", - "sms:required": "sms:true", + "sms:displayName": "link", + "sms:required": "sms:false", "sms:validationRules": [ "url" ] }, { - "@id": "bts:DatasetDoi", + "@id": "bts:Croissant", "@type": "rdfs:Class", - "rdfs:comment": "The Digital Object Identifier (DOI) associated with the dataset.", - "rdfs:label": "DatasetDoi", + "rdfs:comment": "A Synapse url where the croissant file associated with this dataset is stored.", + "rdfs:label": "Croissant", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -201349,17 +202255,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Dataset Doi", - "sms:required": "sms:true", + "sms:displayName": "croissant", + "sms:required": "sms:false", "sms:validationRules": [ "url" ] }, { - "@id": "bts:DatasetAssay", + "@id": "bts:DataCatalog", "@type": "rdfs:Class", - "rdfs:comment": "The assay the dataset is representative of. Multiple values permitted, comma separated.", - "rdfs:label": "DatasetAssay", + "rdfs:comment": "The manifest used to describe datasets for the Synapse Data Catalog.", + "rdfs:label": "DataCatalog", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -201368,8370 +202274,16699 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:10-cellRNASequencing" - }, - { - "@id": "bts:16SRibosomalGeneSequencingAssay" - }, - { - "@id": "bts:3'RNA-seq" - }, - { - "@id": "bts:3C" - }, - { - "@id": "bts:3C-qPCR" - }, - { - "@id": "bts:3DBioprinting" - }, - { - "@id": "bts:3DCellCulture" - }, - { - "@id": "bts:4C" - }, - { - "@id": "bts:5C" - }, - { - "@id": "bts:ATAC-Seq" - }, - { - "@id": "bts:ATPBioluminescenceAssay" - }, - { - "@id": "bts:AffinityPurificationMassSpectrometry" - }, - { - "@id": "bts:Allograft" - }, - { - "@id": "bts:AmpliconSequencing" - }, - { - "@id": "bts:AngiogenesisAssay" - }, - { - "@id": "bts:ApoptosisAssay" - }, - { - "@id": "bts:AtomicAbsorptionSpectrophotometry" - }, - { - "@id": "bts:AtomicAbsorptionSpectroscopy" - }, - { - "@id": "bts:AtomicForceMicroscopy" - }, - { - "@id": "bts:Autoradiography" - }, - { - "@id": "bts:Barcode-Seq" - }, - { - "@id": "bts:BicinchoninicAcidAssay" - }, - { - "@id": "bts:BindingAssay" - }, - { - "@id": "bts:Bio-LayerInterferometry" - }, - { - "@id": "bts:BioluminescenceImaging" - }, - { - "@id": "bts:BisulfiteSequencing" - }, - { - "@id": "bts:BrightfieldMicroscopy" - }, - { - "@id": "bts:BrillouinMicroscopy" - }, - { - "@id": "bts:CASFISH" - }, - { - "@id": "bts:CITE-seq" - }, - { - "@id": "bts:CLIP-qPCR" - }, - { - "@id": "bts:CRISPR" - }, - { - "@id": "bts:CUT&RUN" - }, - { - "@id": "bts:CUT&Tag-Sequencing" - }, - { - "@id": "bts:CellAdhesionAssay" - }, - { - "@id": "bts:CellProliferationAssay" - }, - { - "@id": "bts:CellViabilityAssay" - }, - { - "@id": "bts:Cell-spreadingAssay" - }, - { - "@id": "bts:CellTiter-GloLuminescentCellViabilityAssay" - }, - { - "@id": "bts:CerenkovLuminescenceImaging" - }, - { - "@id": "bts:ChIA-PET" - }, - { - "@id": "bts:ChIP-PCR" - }, - { - "@id": "bts:ChIP-Seq" - }, - { - "@id": "bts:ChIP-qPCRassay" - }, - { - "@id": "bts:ChemiluminescentAssay" - }, - { - "@id": "bts:ChemotaxisAssay" - }, - { - "@id": "bts:CircularDichroismSpectroscopy" - }, - { - "@id": "bts:Co-Immunoprecipitation" - }, - { - "@id": "bts:Co-cultureAssay" - }, - { - "@id": "bts:Collision-InducedDissociation" - }, - { - "@id": "bts:ColorimetricCellViabilityAssay" - }, - { - "@id": "bts:ComputationalModeling" - }, - { - "@id": "bts:ComputationalTool" - }, - { - "@id": "bts:ComputedTomography" - }, - { - "@id": "bts:ConfocalMicroscopy" - }, - { - "@id": "bts:ConfocalReflectanceQuantitativePhaseMicroscopy" - }, - { - "@id": "bts:Cross-LinkingImmunoprecipitationHigh-throughputSequencing" - }, - { - "@id": "bts:Cross-LinkingMassSpectrometry" - }, - { - "@id": "bts:CyclicImmunofluorescence" - }, - { - "@id": "bts:CytochemicalStain" - }, - { - "@id": "bts:CytokineExpressionProfile" - }, - { - "@id": "bts:CytometricBeadArrayAssay" - }, - { - "@id": "bts:CytotoxicityAssay" - }, - { - "@id": "bts:DBiT-Seq" - }, - { - "@id": "bts:DNAGene-ExpressionMicroarray" - }, - { - "@id": "bts:DNAMethylationArray" - }, - { - "@id": "bts:DNASequencing" - }, - { - "@id": "bts:DNase-Seq" - }, - { - "@id": "bts:DRIP-seq" - }, - { - "@id": "bts:DarkFieldMicroscopy" - }, - { - "@id": "bts:DeepMutationalScanning" - }, - { - "@id": "bts:DesorptionElectrosprayIonization" - }, - { - "@id": "bts:DideoxyChainTerminationDNASequencing" - }, - { - "@id": "bts:DifferentialInterferenceContrastMicroscopy" - }, - { - "@id": "bts:DifferentialScanningFluorimetry" - }, - { - "@id": "bts:DiffusionWeightedImaging" - }, - { - "@id": "bts:DirectLong-ReadRNASequencing" - }, - { - "@id": "bts:Drop-Seq" - }, - { - "@id": "bts:DropletDigitalPCR" - }, + "sms:displayName": "DataCatalog", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:Dual-LuciferaseReporterAssay" - }, + "@id": "bts:Study" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:DyeEndocytosisAssay" + "@id": "bts:Component" }, { - "@id": "bts:DynamicContrast-EnhancedMagneticResonanceImaging" + "@id": "bts:DataCatalogId" }, { - "@id": "bts:DynamicForceSpectroscopy" + "@id": "bts:Community" }, { - "@id": "bts:DynamicLightScattering" + "@id": "bts:Description" }, { - "@id": "bts:DynamicSusceptibilityContrast-EnhancedMagneticResonanceImaging" + "@id": "bts:Contributors" }, { - "@id": "bts:ELISA" + "@id": "bts:Keywords" }, { - "@id": "bts:EfferocytosisAssay" + "@id": "bts:Individuals" }, { - "@id": "bts:ElectronDiffraction" + "@id": "bts:Link" }, { - "@id": "bts:ElectronMicroscopy" - }, + "@id": "bts:Croissant" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:DataCatalogId", + "@type": "rdfs:Class", + "rdfs:comment": "A unique primary key that enables record updates using schematic.", + "rdfs:label": "DataCatalogId", + "rdfs:subClassOf": [ { - "@id": "bts:ElectronParamagneticResonanceSpectroscopy" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DataCatalog_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] + }, + { + "@id": "bts:Contributors", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Contributors", + "rdfs:subClassOf": [ { - "@id": "bts:ElectrophoreticMobilityShiftAssay" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "contributors", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Study", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Study", + "rdfs:subClassOf": [ { - "@id": "bts:ElectrosprayIonizationTime-of-FlightMassSpectrometry" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "study", + "sms:required": "sms:false", + "sms:requiresComponent": [ { - "@id": "bts:EndotoxinAssay" - }, + "@id": "bts:GrantView" + } + ], + "sms:requiresDependency": [ { - "@id": "bts:Energy-DispersiveX-RaySpectroscopy" + "@id": "bts:Component" }, { - "@id": "bts:EnzymeActivityAssay" + "@id": "bts:StudyId" }, { - "@id": "bts:Enzyme-LinkedImmunospotAssay" + "@id": "bts:GrantViewKey" }, { - "@id": "bts:EpidemiologicalMethod" + "@id": "bts:ProjectViewKey" }, { - "@id": "bts:FAIRE-Seq" + "@id": "bts:StudydbGaPAccessionId" }, { - "@id": "bts:FISH" + "@id": "bts:StudyName" }, { - "@id": "bts:FlowCytometry" + "@id": "bts:StudyDescription" }, { - "@id": "bts:FluorescenceActivatedCellSorting" + "@id": "bts:StudyInvestigator" }, { - "@id": "bts:FluorescenceCorrelationSpectroscopy" + "@id": "bts:PersonViewKey" }, { - "@id": "bts:FluorescenceImaging" + "@id": "bts:StudyNumberofParticipants" }, { - "@id": "bts:FluorescenceLifetimeImagingMicroscopy" + "@id": "bts:StudyNumberofSamples" }, { - "@id": "bts:FluorescenceMicroscopy" + "@id": "bts:StudyDe-identificationMethodType" }, { - "@id": "bts:FluorescenceRecoveryAfterPhoto-Bleaching" + "@id": "bts:StudyDe-identificationMethodDescription" }, { - "@id": "bts:FluorescentAntibodyProcedure" + "@id": "bts:StudyDe-identificationMethodSoftware" }, { - "@id": "bts:FluorescentCellBarcoding" + "@id": "bts:StudyIndexDate" }, { - "@id": "bts:FluorescentInSituSequencing" + "@id": "bts:StudyReuseStatement" }, { - "@id": "bts:FocusedIonBeamScanningElectronMicroscopy" + "@id": "bts:StudyDataUseCodes" }, { - "@id": "bts:ForsterResonanceEnergyTransfer" + "@id": "bts:StudyLicense" }, { - "@id": "bts:FourierTransformIonCyclotronResonanceMassSpectrometry" + "@id": "bts:StudySourceGeography" }, { - "@id": "bts:Fourier-TransformInfraredSpectroscopy" + "@id": "bts:StudyDataPermission" }, { - "@id": "bts:GasChromatographyMassSpectrometry" - }, + "@id": "bts:StudyDataTier" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:AccessType", + "@type": "rdfs:Class", + "rdfs:comment": "Access type for the dataset.", + "rdfs:label": "AccessType", + "rdfs:subClassOf": [ { - "@id": "bts:GelatinZymography" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:Genotyping" + "@id": "bts:Anonymous" }, { - "@id": "bts:GlobalChromatinProfiling" + "@id": "bts:Open" }, { - "@id": "bts:GlobalRun-OnSequencing" + "@id": "bts:Controlled" }, { - "@id": "bts:GraphiteFurnaceAtomicAbsorptionSpectrometry" - }, + "@id": "bts:Private" + } + ], + "sms:displayName": "accessType", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:Anonymous", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Anonymous", + "rdfs:subClassOf": [ { - "@id": "bts:HL-Chip" + "@id": "bts:AccessType" }, { - "@id": "bts:HPLC-MSMS" - }, + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Anonymous", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Open", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Open", + "rdfs:subClassOf": [ { - "@id": "bts:HematoxylinandEosinStainingMethod" + "@id": "bts:AccessType" }, { - "@id": "bts:Hi-C" - }, + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Open", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Controlled", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Controlled", + "rdfs:subClassOf": [ { - "@id": "bts:HiChIP" + "@id": "bts:AccessType" }, { - "@id": "bts:HighThroughputScreening" - }, + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Controlled", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Private", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Private", + "rdfs:subClassOf": [ { - "@id": "bts:High-ContentScreen" + "@id": "bts:AccessType" }, { - "@id": "bts:Hydrogels" - }, + "@id": "bts:StudyDataTier" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Private", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AlternateName", + "@type": "rdfs:Class", + "rdfs:comment": "An altername name that can be used for search and discovery improvement.", + "rdfs:label": "AlternateName", + "rdfs:subClassOf": [ { - "@id": "bts:HydrophilicInteractionChromatography" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "alternateName", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:ConditionsOfAccess", + "@type": "rdfs:Class", + "rdfs:comment": "Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown.", + "rdfs:label": "ConditionsOfAccess", + "rdfs:subClassOf": [ { - "@id": "bts:ImageCytometry" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "conditionsOfAccess", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:CountryOfOrigin", + "@type": "rdfs:Class", + "rdfs:comment": "Origin of individuals from which data were generated. Omit if not applicable/unknown.", + "rdfs:label": "CountryOfOrigin", + "rdfs:subClassOf": [ { - "@id": "bts:Imaging" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:ImmobilizedMetalAffinityChromatography" + "@id": "bts:AD" }, { - "@id": "bts:ImmunoFISH" + "@id": "bts:AE" }, { - "@id": "bts:Immunoassay" + "@id": "bts:AF" }, { - "@id": "bts:Immunocytochemistry" + "@id": "bts:AG" }, { - "@id": "bts:ImmunohistochemistryStainingMethod" + "@id": "bts:AI" }, { - "@id": "bts:Immunoprecipitation" + "@id": "bts:AL" }, { - "@id": "bts:InSituHybridization" + "@id": "bts:AM" }, { - "@id": "bts:InVitroCellKillingAssay" + "@id": "bts:AO" }, { - "@id": "bts:InVitroModel" + "@id": "bts:AQ" }, { - "@id": "bts:InVitroSelection" + "@id": "bts:AR" }, { - "@id": "bts:InVitroTranslation" + "@id": "bts:AS" }, { - "@id": "bts:InVivoBioluminescence" + "@id": "bts:AT" }, { - "@id": "bts:In-CellWesternAssay" + "@id": "bts:AU" }, { - "@id": "bts:Inductively-CoupledPlasmaMassSpectrometry" + "@id": "bts:AW" }, { - "@id": "bts:InterferenceReflectionMicroscopy" + "@id": "bts:AX" }, { - "@id": "bts:IntravitalMicroscopy" + "@id": "bts:AZ" }, { - "@id": "bts:InvasionAssay" + "@id": "bts:BA" }, { - "@id": "bts:Karyotyping" + "@id": "bts:BB" }, { - "@id": "bts:Knife-EdgeScanningMicroscopy" + "@id": "bts:BD" }, { - "@id": "bts:L1000mRNAProfilingAssay" + "@id": "bts:BE" }, { - "@id": "bts:LatticeLightSheetMicroscopy" + "@id": "bts:BF" }, { - "@id": "bts:LiquidChromatographyMassSpectrometry" + "@id": "bts:BG" }, { - "@id": "bts:LiquidChromatography/TandemMassSpectrometry" + "@id": "bts:BH" }, { - "@id": "bts:Low-VacuumScanningElectronMicroscopy" + "@id": "bts:BI" }, { - "@id": "bts:LuciferaseReporterAssay" + "@id": "bts:BJ" }, { - "@id": "bts:LuminescentCellViabilityAssay" + "@id": "bts:BL" }, { - "@id": "bts:MALDI-TOFMassSpectrometry" + "@id": "bts:BM" }, { - "@id": "bts:MEMACellGrowthAssay" + "@id": "bts:BN" }, { - "@id": "bts:MNase-Seq" + "@id": "bts:BO" }, { - "@id": "bts:MULTI-Seq" + "@id": "bts:BQ" }, { - "@id": "bts:MacrophagePolarizationAssay" + "@id": "bts:BR" }, { - "@id": "bts:MagneticResonanceImaging" + "@id": "bts:BS" }, { - "@id": "bts:MagneticTweezers" + "@id": "bts:BT" }, { - "@id": "bts:MagneticTwistingCytometry" + "@id": "bts:BV" }, { - "@id": "bts:MagneticallyActivatedCellSorting" + "@id": "bts:BW" }, { - "@id": "bts:MammosphereFormationAssay" + "@id": "bts:BY" }, { - "@id": "bts:MassCytometry" + "@id": "bts:BZ" }, { - "@id": "bts:MassSpectrometry" + "@id": "bts:CA" }, { - "@id": "bts:MathematicalModeling" + "@id": "bts:CC" }, { - "@id": "bts:MeDIP" + "@id": "bts:CD" }, { - "@id": "bts:MeRIP-Seq" + "@id": "bts:CF" }, { - "@id": "bts:MethylBindingDomainSequencing" + "@id": "bts:CG" }, { - "@id": "bts:Methylation-SpecificPCR" + "@id": "bts:CH" }, { - "@id": "bts:Micro-computedTomography" + "@id": "bts:CI" }, { - "@id": "bts:MicroRNAExpressionArray" + "@id": "bts:CK" }, { - "@id": "bts:MicroRNASequencing" + "@id": "bts:CL" }, { - "@id": "bts:MicrocontactPrinting" + "@id": "bts:CM" }, { - "@id": "bts:Microfluidics" + "@id": "bts:CN" }, { - "@id": "bts:MicropipetteAdhesionAssay" + "@id": "bts:CO" }, { - "@id": "bts:MicropipetteAspiration" + "@id": "bts:CR" }, { - "@id": "bts:Microscopy" + "@id": "bts:CU" }, { - "@id": "bts:MigrationAssay" + "@id": "bts:CV" }, { - "@id": "bts:Mint-ChIP" + "@id": "bts:CW" }, { - "@id": "bts:Modeling" + "@id": "bts:CX" }, { - "@id": "bts:MolecularSimulations" + "@id": "bts:CY" }, { - "@id": "bts:MonolayerStressMicroscopy" + "@id": "bts:CZ" }, { - "@id": "bts:Multi-AngleLightScattering" + "@id": "bts:DE" }, { - "@id": "bts:Multi-IsotopeMassSpectrometry" + "@id": "bts:DJ" }, { - "@id": "bts:MultiparametricMagneticResonanceImaging" + "@id": "bts:DK" }, { - "@id": "bts:MultiphotonMicroscopy" + "@id": "bts:DM" }, { - "@id": "bts:MultiplexedError-RobustFluorescenceInSituHybridization" + "@id": "bts:DO" }, { - "@id": "bts:MultiplexedImmunofluorescence" + "@id": "bts:DZ" }, { - "@id": "bts:MultiplexedImmunohistochemistry" + "@id": "bts:EC" }, { - 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"sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TAB-Seq", + "@id": "bts:TractionForceMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TAB-Seq", + "rdfs:label": "TractionForceMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -209826,16 +219070,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "TAB-Seq", + "sms:displayName": "Traction Force Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TCRSequencing", + "@id": "bts:TransmissionElectronMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TCRSequencing", + "rdfs:label": "TransmissionElectronMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -209852,16 +219099,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "TCR Sequencing", + "sms:displayName": "Transmission Electron Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TIRFMicroscopy", + "@id": "bts:TranswellAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TIRFMicroscopy", + "rdfs:label": "TranswellAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -209878,16 +219128,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "TIRF Microscopy", + "sms:displayName": "Transwell Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TRAPStaining", + "@id": "bts:UPLC-MSMS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TRAPStaining", + "rdfs:label": "UPLC-MSMS", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -209904,16 +219157,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "TRAP Staining", + "sms:displayName": "UPLC-MSMS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TUNELassay", + "@id": "bts:UVPhotocrosslinking", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TUNELassay", + "rdfs:label": "UVPhotocrosslinking", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -209930,16 +219186,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "TUNEL assay", + "sms:displayName": "UV Photocrosslinking", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TandemMassSpectrometry", + "@id": "bts:VibrationalSpectroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TandemMassSpectrometry", + "rdfs:label": "VibrationalSpectroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -209956,16 +219215,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Tandem Mass Spectrometry", + "sms:displayName": "Vibrational Spectroscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TandemMassTagging", + "@id": "bts:VirusPlaqueAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TandemMassTagging", + "rdfs:label": "VirusPlaqueAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -209982,16 +219244,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Tandem Mass Tagging", + "sms:displayName": "Virus Plaque Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TargetEngagementAssay", + "@id": "bts:VonKossaStaining", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TargetEngagementAssay", + "rdfs:label": "VonKossaStaining", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210008,16 +219273,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Target Engagement Assay", + "sms:displayName": "Von Kossa Staining", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TargetedGenomeSequencing", + "@id": "bts:WesternBlotting", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TargetedGenomeSequencing", + "rdfs:label": "WesternBlotting", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210034,16 +219302,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Targeted Genome Sequencing", + "sms:displayName": "Western Blotting", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TargetedTranscriptomeSequencing", + "@id": "bts:WholeExomeSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TargetedTranscriptomeSequencing", + "rdfs:label": "WholeExomeSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210060,16 +219331,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Targeted Transcriptome Sequencing", + "sms:displayName": "Whole Exome Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ThermalShiftAssay", + "@id": "bts:WholeGenomeBisulfiteSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ThermalShiftAssay", + "rdfs:label": "WholeGenomeBisulfiteSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210086,16 +219360,22 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Thermal Shift Assay", + "sms:displayName": "Whole Genome Bisulfite Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Thin-LayerChromatography", + "@id": "bts:WholeGenomeSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Thin-LayerChromatography", + "rdfs:label": "WholeGenomeSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:ToolTopic" + }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210112,16 +219392,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Thin-Layer Chromatography", + "sms:displayName": "Whole Genome Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TilingArray", + "@id": "bts:WidefieldFluorescenceMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TilingArray", + "rdfs:label": "WidefieldFluorescenceMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210138,16 +219421,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Tiling Array", + "sms:displayName": "Widefield Fluorescence Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TimeLapseMicroscopy", + "@id": "bts:Wound-HealingAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TimeLapseMicroscopy", + "rdfs:label": "Wound-HealingAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210164,16 +219450,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Time Lapse Microscopy", + "sms:displayName": "Wound-Healing Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Time-CorrelatedSinglePhotonCounting", + "@id": "bts:X-RayCrystallography", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Time-CorrelatedSinglePhotonCounting", + "rdfs:label": "X-RayCrystallography", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210190,16 +219479,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Time-Correlated Single Photon Counting", + "sms:displayName": "X-Ray Crystallography", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TissueEngineering", + "@id": "bts:X-RayDiffraction", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TissueEngineering", + "rdfs:label": "X-RayDiffraction", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210216,16 +219508,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Tissue Engineering", + "sms:displayName": "X-Ray Diffraction", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TissueMicroarray", + "@id": "bts:X-RayMicro-ComputedTomography", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TissueMicroarray", + "rdfs:label": "X-RayMicro-ComputedTomography", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210242,16 +219537,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Tissue Microarray", + "sms:displayName": "X-Ray Micro-Computed Tomography", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TotalInternalReflectionFluorescenceMicroscopy", + "@id": "bts:CDNAArray", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TotalInternalReflectionFluorescenceMicroscopy", + "rdfs:label": "CDNAArray", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210268,16 +219566,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Total Internal Reflection Fluorescence Microscopy", + "sms:displayName": "cDNA Array", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TractionForceMicroscopy", + "@id": "bts:ECLIP-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TractionForceMicroscopy", + "rdfs:label": "ECLIP-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210294,16 +219595,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Traction Force Microscopy", + "sms:displayName": "eCLIP-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TransmissionElectronMicroscopy", + "@id": "bts:MRNASequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TransmissionElectronMicroscopy", + "rdfs:label": "MRNASequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210320,16 +219624,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transmission Electron Microscopy", + "sms:displayName": "mRNA Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:TranswellAssay", + "@id": "bts:QPCR", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "TranswellAssay", + "rdfs:label": "QPCR", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210346,16 +219653,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Transwell Assay", + "sms:displayName": "qPCR", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UPLC-MSMS", + "@id": "bts:ScCGI-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UPLC-MSMS", + "rdfs:label": "ScCGI-seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210372,16 +219682,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UPLC-MSMS", + "sms:displayName": "scCGI-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:UVPhotocrosslinking", + "@id": "bts:ScNT-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UVPhotocrosslinking", + "rdfs:label": "ScNT-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210398,16 +219711,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UV Photocrosslinking", + "sms:displayName": "scNT-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VibrationalSpectroscopy", + "@id": "bts:ScSLAM-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VibrationalSpectroscopy", + "rdfs:label": "ScSLAM-seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210424,16 +219740,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Vibrational Spectroscopy", + "sms:displayName": "scSLAM-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VirusPlaqueAssay", + "@id": "bts:SeqFISH", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VirusPlaqueAssay", + "rdfs:label": "SeqFISH", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210450,16 +219769,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Virus Plaque Assay", + "sms:displayName": "seqFISH", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VonKossaStaining", + "@id": "bts:ShRNA", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VonKossaStaining", + "rdfs:label": "ShRNA", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210476,16 +219798,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Von Kossa Staining", + "sms:displayName": "shRNA", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WesternBlotting", + "@id": "bts:SiRNA", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WesternBlotting", + "rdfs:label": "SiRNA", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210502,16 +219827,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Western Blotting", + "sms:displayName": "siRNA", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeExomeSequencing", + "@id": "bts:SmFISH", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeExomeSequencing", + "rdfs:label": "SmFISH", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210528,16 +219856,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Exome Sequencing", + "sms:displayName": "smFISH", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeGenomeBisulfiteSequencing", + "@id": "bts:SmRNA-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeGenomeBisulfiteSequencing", + "rdfs:label": "SmRNA-seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210554,18 +219885,18 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Genome Bisulfite Sequencing", + "sms:displayName": "smRNA-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WholeGenomeSequencing", + "@id": "bts:SnRNA-seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "WholeGenomeSequencing", + "rdfs:label": "SnRNA-seq", "rdfs:subClassOf": [ { - "@id": "bts:ToolTopic" + "@id": "bts:MeasurementTechnique" }, { "@id": "bts:DatasetAssay" @@ -210583,16 +219914,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Whole Genome Sequencing", + "sms:displayName": "snRNA-seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:WidefieldFluorescenceMicroscopy", + "@id": "bts:IsothermalTitrationCalorimetry", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": 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[] }, { - "@id": "bts:X-RayCrystallography", + "@id": "bts:10xMultiome", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayCrystallography", + "rdfs:label": "10xMultiome", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210661,16 +220001,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Crystallography", + "sms:displayName": "10x Multiome", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayDiffraction", + "@id": "bts:VisiumSpatialGeneExpression", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayDiffraction", + "rdfs:label": "VisiumSpatialGeneExpression", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210687,16 +220030,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Diffraction", + "sms:displayName": "Visium Spatial Gene Expression", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:X-RayMicro-ComputedTomography", + "@id": "bts:AntitumorDrugScreeningAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "X-RayMicro-ComputedTomography", + "rdfs:label": "AntitumorDrugScreeningAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210713,16 +220059,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "X-Ray Micro-Computed Tomography", + "sms:displayName": "Antitumor Drug Screening Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CDNAArray", + "@id": "bts:BioelectrochemicalAnalysis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CDNAArray", + "rdfs:label": "BioelectrochemicalAnalysis", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210739,16 +220088,19 @@ "schema:isPartOf": { 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"bts:DatasetAssay" }, @@ -210791,16 +220146,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "mRNA Sequencing", + "sms:displayName": "Cell Cycle Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:QPCR", + "@id": "bts:ClonalityAnalysis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "QPCR", + "rdfs:label": "ClonalityAnalysis", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210817,16 +220175,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "qPCR", + "sms:displayName": "Clonality Analysis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScCGI-seq", + "@id": "bts:ComparativeGenomicHybridization", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScCGI-seq", + "rdfs:label": "ComparativeGenomicHybridization", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210843,16 +220204,715 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scCGI-seq", + "sms:displayName": "Comparative Genomic Hybridization", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScNT-Seq", + "@id": "bts:Cryo-ElectronMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScNT-Seq", + "rdfs:label": "Cryo-ElectronMicroscopy", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cryo-Electron Microscopy", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Cryo-ElectronTomography", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Cryo-ElectronTomography", + 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"sms:validationRules": [] + }, + { + "@id": "bts:ArtificialIntelligence", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ArtificialIntelligence", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Artificial Intelligence", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CellCulture", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CellCulture", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cell Culture", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ClinicalStudy", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ClinicalStudy", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Clinical Study", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Cell-freeCirculatingTumorDNAAssay", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Cell-freeCirculatingTumorDNAAssay", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Cell-free Circulating Tumor DNA Assay", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Co-ImmunoprecipitationMassSpectrometry", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Co-ImmunoprecipitationMassSpectrometry", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Co-Immunoprecipitation Mass Spectrometry", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DeepLearning", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "DeepLearning", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Deep Learning", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:GeneOntologyEnrichmentAnalysis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GeneOntologyEnrichmentAnalysis", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Gene Ontology Enrichment Analysis", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:GeneSetEnrichmentAnalysis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GeneSetEnrichmentAnalysis", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Gene Set Enrichment Analysis", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:GeneSilencing", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GeneSilencing", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Gene Silencing", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture", + "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, + { + "@id": "bts:DatasetAssay" + }, + { + "@id": "bts:FileAssay" + }, + { + "@id": "bts:PublicationAssay" + }, + { + "@id": "bts:DSPDatasetAssay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ImagingMassCytometry", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ImagingMassCytometry", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210869,16 +220929,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scNT-Seq", + "sms:displayName": "Imaging Mass Cytometry", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ScSLAM-seq", + "@id": "bts:ImmunofluorescentStainingMethod", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ScSLAM-seq", + "rdfs:label": "ImmunofluorescentStainingMethod", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210895,16 +220958,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "scSLAM-seq", + "sms:displayName": "Immunofluorescent Staining Method", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SeqFISH", + "@id": "bts:ViralTransduction", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SeqFISH", + "rdfs:label": "ViralTransduction", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210921,16 +220987,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "seqFISH", + "sms:displayName": "Viral Transduction", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ShRNA", + "@id": "bts:MetastaticColonizationAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ShRNA", + "rdfs:label": "MetastaticColonizationAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210947,16 +221016,22 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "shRNA", + "sms:displayName": "Metastatic Colonization Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SiRNA", + "@id": "bts:PhylogeneticAnalysis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SiRNA", + "rdfs:label": "PhylogeneticAnalysis", "rdfs:subClassOf": [ + { + "@id": "bts:ToolOperation" + }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210973,16 +221048,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "siRNA", + "sms:displayName": "Phylogenetic Analysis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SmFISH", + "@id": "bts:PicrosiriusStaining", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SmFISH", + "rdfs:label": "PicrosiriusStaining", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -210999,16 +221077,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "smFISH", + "sms:displayName": "Picrosirius Staining", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SmRNA-seq", + "@id": "bts:ScratchAssay", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SmRNA-seq", + "rdfs:label": "ScratchAssay", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211025,16 +221106,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "smRNA-seq", + "sms:displayName": "Scratch Assay", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SnRNA-seq", + "@id": "bts:StructuralVariantAnalysis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SnRNA-seq", + "rdfs:label": "StructuralVariantAnalysis", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211051,16 +221135,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "snRNA-seq", + "sms:displayName": "Structural Variant Analysis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:IsothermalTitrationCalorimetry", + "@id": "bts:SurvivalAnalysis", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "IsothermalTitrationCalorimetry", + "rdfs:label": "SurvivalAnalysis", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211077,16 +221164,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Isothermal Titration Calorimetry", + "sms:displayName": "Survival Analysis", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SuspendedMicrochannelResonator", + "@id": "bts:TargetedErrorCorrectionSequencing", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SuspendedMicrochannelResonator", + "rdfs:label": "TargetedErrorCorrectionSequencing", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211103,16 +221193,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Suspended Microchannel Resonator", + "sms:displayName": "Targeted Error Correction Sequencing", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:10xMultiome", + "@id": "bts:Tuba-Seq", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "10xMultiome", + "rdfs:label": "Tuba-Seq", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211129,16 +221222,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "10x Multiome", + "sms:displayName": "Tuba-Seq", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:VisiumSpatialGeneExpression", + "@id": "bts:SDS-PAGE", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "VisiumSpatialGeneExpression", + "rdfs:label": "SDS-PAGE", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211155,16 +221251,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Visium Spatial Gene Expression", + "sms:displayName": "SDS-PAGE", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:AntitumorDrugScreeningAssay", + "@id": "bts:CellFractionation", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AntitumorDrugScreeningAssay", + "rdfs:label": "CellFractionation", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211181,16 +221280,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Antitumor Drug Screening Assay", + "sms:displayName": "Cell Fractionation", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BioelectrochemicalAnalysis", + "@id": "bts:MultiscaleLightSheetMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BioelectrochemicalAnalysis", + "rdfs:label": "MultiscaleLightSheetMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211207,16 +221309,19 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Bioelectrochemical Analysis", + "sms:displayName": "Multiscale Light Sheet Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ChimericAntigenReceptorT-CellTherapy", + "@id": "bts:LightSheetMicroscopy", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ChimericAntigenReceptorT-CellTherapy", + "rdfs:label": "LightSheetMicroscopy", "rdfs:subClassOf": [ + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211233,16 +221338,22 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Chimeric Antigen Receptor T-Cell Therapy", + "sms:displayName": "Light Sheet Microscopy", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CellCycleAssay", + "@id": "bts:CODEX", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CellCycleAssay", + "rdfs:label": "CODEX", "rdfs:subClassOf": [ + { + "@id": "bts:ImageAssayType" + }, + { + "@id": "bts:MeasurementTechnique" + }, { "@id": "bts:DatasetAssay" }, @@ -211259,1116 +221370,1427 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Cell Cycle Assay", + "sms:displayName": "CODEX", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:ClonalityAnalysis", + "@id": "bts:Species", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ClonalityAnalysis", + "rdfs:comment": "Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data.", + "rdfs:label": "Species", "rdfs:subClassOf": [ { - "@id": "bts:DatasetAssay" + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:AfricanBushElephant" }, { - "@id": "bts:FileAssay" + "@id": "bts:Armadillo" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:AsianElephant" }, { - "@id": "bts:DSPDatasetAssay" + "@id": "bts:Boar" + }, + { + "@id": "bts:Cat" + }, + { + "@id": "bts:Chicken" + }, + { + "@id": "bts:Cow" + }, + { + "@id": "bts:Dog" + }, + { + "@id": "bts:Escherichiacoli" + }, + { + "@id": "bts:GuineaPig" + }, + { + "@id": "bts:Horse" + }, + { + "@id": "bts:Human" + }, + { + "@id": "bts:HumanPatient" + }, + { + "@id": "bts:HumanCellLine" + }, + { + "@id": "bts:Mouse" + }, + { + "@id": "bts:Multispecies" + }, + { + "@id": "bts:NotApplicable" + }, + { + "@id": "bts:Opossum" + }, + { + "@id": "bts:Rabbit" + }, + { + "@id": "bts:Rat" + }, + { + "@id": "bts:Rhesusmonkey" + }, + { + "@id": "bts:Sheep" + }, + { + "@id": "bts:Trichoplaxadhaerens" + }, + { + "@id": "bts:Unknown" + }, + { + "@id": "bts:Unspecified" + }, + { + "@id": "bts:Worm" + }, + { + "@id": "bts:Yeast" + }, + { + "@id": "bts:FruitFly" + }, + { + "@id": "bts:Zebrafish" + } + ], + "sms:displayName": "species", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Subject", + "@type": "rdfs:Class", + "rdfs:comment": "Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme.", + "rdfs:label": "Subject", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Clonality Analysis", + "sms:displayName": "subject", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:ComparativeGenomicHybridization", + "@id": "bts:Title", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ComparativeGenomicHybridization", + "rdfs:comment": "The name of the dataset.", + "rdfs:label": "Title", "rdfs:subClassOf": [ { - "@id": "bts:DatasetAssay" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "title", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:DatasetName", + "@type": "rdfs:Class", + "rdfs:comment": "Name of the dataset", + "rdfs:label": "DatasetName", + "rdfs:subClassOf": [ { - "@id": "bts:FileAssay" - }, + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Dataset Name", + "sms:required": "sms:true", + "sms:validationRules": [] + }, + { + "@id": "bts:DatasetAlias", + "@type": "rdfs:Class", + "rdfs:comment": "Alias of the dataset. Must be unique. Can be the GEO identifier such as GSE12345, or a DOI. 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"bts:CellCulture" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:ClinicalStudy" }, { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Targeted Error Correction Sequencing", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Tuba-Seq", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Tuba-Seq", - "rdfs:subClassOf": [ + "@id": "bts:Cell-freeCirculatingTumorDNAAssay" + }, { - "@id": "bts:DatasetAssay" + "@id": "bts:Co-ImmunoprecipitationMassSpectrometry" }, { - "@id": "bts:FileAssay" + "@id": "bts:DeepLearning" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:GeneOntologyEnrichmentAnalysis" }, { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Tuba-Seq", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SDS-PAGE", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SDS-PAGE", - "rdfs:subClassOf": [ + "@id": "bts:GeneSetEnrichmentAnalysis" + }, { - "@id": "bts:DatasetAssay" + "@id": "bts:GeneSilencing" }, { - "@id": "bts:FileAssay" + "@id": "bts:HumanInducedPluripotentStemCell-derivedCardiomyocytesCulture" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:ImagingMassCytometry" }, { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "SDS-PAGE", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CellFractionation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CellFractionation", - "rdfs:subClassOf": [ + "@id": "bts:ImmunofluorescentStainingMethod" + }, { - "@id": "bts:DatasetAssay" + "@id": "bts:Immunotherapy" }, { - "@id": "bts:FileAssay" + "@id": "bts:ViralTransduction" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:MetastaticColonizationAssay" }, { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Cell Fractionation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MultiscaleLightSheetMicroscopy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MultiscaleLightSheetMicroscopy", - "rdfs:subClassOf": [ + "@id": "bts:PhylogeneticAnalysis" + }, { - "@id": "bts:DatasetAssay" + "@id": "bts:PicrosiriusStaining" }, { - "@id": "bts:FileAssay" + "@id": "bts:ScratchAssay" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:StructuralVariantAnalysis" }, { - "@id": "bts:DSPDatasetAssay" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Multiscale Light Sheet Microscopy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:LightSheetMicroscopy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "LightSheetMicroscopy", - "rdfs:subClassOf": [ + "@id": "bts:SurvivalAnalysis" + }, { - "@id": "bts:DatasetAssay" + "@id": "bts:TargetedErrorCorrectionSequencing" }, { - "@id": "bts:FileAssay" + "@id": "bts:Tuba-Seq" }, { - "@id": "bts:PublicationAssay" + "@id": "bts:SDS-PAGE" }, { - "@id": "bts:DSPDatasetAssay" + "@id": "bts:CellFractionation" + }, + { + "@id": "bts:MultiscaleLightSheetMicroscopy" + }, + { + "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Light Sheet Microscopy", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "Dataset Assay", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { "@id": "bts:DatasetSpecies", @@ -212432,6 +222854,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -218427,6 +228852,9 @@ { "@id": "bts:DB" }, + { + "@id": "bts:DCC" + }, { "@id": "bts:DSStore" }, @@ -218655,9 +229083,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -218678,9 +229103,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -218702,9 +229124,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -218731,9 +229150,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -218759,9 +229175,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -218782,9 +229195,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -218805,9 +229215,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -218829,9 +229236,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -218857,9 +229261,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -218874,6 +229275,26 @@ "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "DB", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetFileFormats" + }, + { + "@id": "bts:FileFormat" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "DB", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:DCC", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "DCC", "rdfs:subClassOf": [ { "@id": "bts:DatasetFileFormats" @@ -218882,13 +229303,16 @@ "@id": "bts:FileFormat" }, { - "@id": "bts:DSPDatasetFileFormats" + "@id": "bts:ToolInputFormat" + }, + { + "@id": "bts:ToolOutputFormat" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "DB", + "sms:displayName": "DCC", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -218903,9 +229327,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -218927,9 +229348,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -218956,9 +229374,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -218985,9 +229400,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219013,9 +229425,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219036,9 +229445,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219059,9 +229465,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219082,9 +229485,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219105,9 +229505,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219129,9 +229526,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219158,9 +229552,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219186,9 +229577,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219210,9 +229598,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219239,9 +229624,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219271,9 +229653,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219299,9 +229678,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219323,9 +229699,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219352,9 +229725,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219386,9 +229756,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219409,9 +229776,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219433,9 +229797,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219461,9 +229822,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219485,9 +229843,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219513,9 +229868,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219537,9 +229889,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219566,9 +229915,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219594,9 +229940,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219618,9 +229961,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219647,9 +229987,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219675,9 +230012,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219699,9 +230033,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219727,9 +230058,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219750,9 +230078,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219773,9 +230098,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219796,9 +230118,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219819,9 +230138,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219842,9 +230158,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219865,9 +230178,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219888,9 +230198,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -219912,9 +230219,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219941,9 +230245,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219970,9 +230271,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -219999,9 +230297,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -220027,9 +230322,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220051,9 +230343,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -220079,9 +230368,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220102,9 +230388,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220126,9 +230409,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -220155,9 +230435,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -220183,9 +230460,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220206,9 +230480,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220229,9 +230500,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220252,9 +230520,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220275,9 +230540,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220298,9 +230560,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220322,9 +230581,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -220351,9 +230607,6 @@ { "@id": "bts:FileFormat" }, - { - "@id": "bts:DSPDatasetFileFormats" - }, { "@id": "bts:ToolInputFormat" }, @@ -220379,9 +230632,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220402,9 +230652,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220431,9 +230678,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220454,9 +230698,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220477,9 +230718,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220500,9 +230738,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220523,9 +230758,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220546,9 +230778,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220569,9 +230798,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220592,9 +230818,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220615,9 +230838,6 @@ }, { "@id": "bts:FileFormat" - }, - { - "@id": "bts:DSPDatasetFileFormats" } ], "schema:isPartOf": { @@ -220814,81 +231034,6 @@ "list like" ] }, - { - "@id": "bts:Study", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Study", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "study", - "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:GrantView" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:StudyId" - }, - { - "@id": "bts:GrantViewKey" - }, - { - "@id": "bts:ProjectViewKey" - }, - { - "@id": "bts:StudydbGaPAccessionId" - }, - { - "@id": "bts:StudyName" - }, - { - "@id": "bts:StudyDescription" - }, - { - "@id": "bts:StudyInvestigator" - }, - { - "@id": "bts:PersonViewKey" - }, - { - "@id": "bts:StudyNumberofParticipants" - }, - { - "@id": "bts:StudyDe-identificationMethodType" - }, - { - "@id": "bts:StudyDe-identificationMethodDescription" - }, - { - "@id": "bts:StudyDe-identificationMethodSoftware" - }, - { - "@id": "bts:StudyIndexDate" - }, - { - "@id": "bts:StudyReuseStatement" - }, - { - "@id": "bts:StudyDataUseCodes" - }, - { - "@id": "bts:StudyLicense" - } - ], - "sms:validationRules": [] - }, { "@id": "bts:DatasetGrantNumber", "@type": "rdfs:Class", @@ -221334,6 +231479,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Dataset Grant Number", @@ -221898,15 +232076,400 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA202241", + "sms:displayName": "CA202241", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209891", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209891", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209891", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209923", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209923", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209923", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209971", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209971", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209971", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209975", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209975", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209975", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209978", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209978", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209978", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209988", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209988", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209988", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209992", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209992", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209992", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA209997", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA209997", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA209997", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA210152", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA210152", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA210152", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA210173", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA210173", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA210173", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA210180", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA210180", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + }, + { + "@id": "bts:ResourceGrantNumber" + }, + { + "@id": "bts:PersonGrantNumber" + }, + { + "@id": "bts:ProjectGrantNumber" + }, + { + "@id": "bts:PublicationGrantNumber" + }, + { + "@id": "bts:DSPDatasetGrantNumber" + }, + { + "@id": "bts:ToolGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA210180", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209891", + "@id": "bts:CA210181", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209891", + "rdfs:label": "CA210181", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -221933,15 +232496,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209891", + "sms:displayName": "CA210181", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209923", + "@id": "bts:CA210184", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209923", + "rdfs:label": "CA210184", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -221968,15 +232531,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209923", + "sms:displayName": "CA210184", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209971", + "@id": "bts:CA210190", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209971", + "rdfs:label": "CA210190", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222003,15 +232566,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209971", + "sms:displayName": "CA210190", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209975", + "@id": "bts:CA214282", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209975", + "rdfs:label": "CA214282", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222038,15 +232601,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209975", + "sms:displayName": "CA214282", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209978", + "@id": "bts:CA214292", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209978", + "rdfs:label": "CA214292", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222073,15 +232636,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209978", + "sms:displayName": "CA214292", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209988", + "@id": "bts:CA214297", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209988", + "rdfs:label": "CA214297", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222108,15 +232671,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209988", + "sms:displayName": "CA214297", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209992", + "@id": "bts:CA214300", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209992", + "rdfs:label": "CA214300", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222143,15 +232706,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209992", + "sms:displayName": "CA214300", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA209997", + "@id": "bts:CA214354", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA209997", + "rdfs:label": "CA214354", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222178,15 +232741,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA209997", + "sms:displayName": "CA214354", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA210152", + "@id": "bts:CA214369", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA210152", + "rdfs:label": "CA214369", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222213,15 +232776,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA210152", + "sms:displayName": "CA214369", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA210173", + "@id": "bts:CA214381", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA210173", + "rdfs:label": "CA214381", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222248,15 +232811,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA210173", + "sms:displayName": "CA214381", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA210180", + "@id": "bts:CA214411", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA210180", + "rdfs:label": "CA214411", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222283,15 +232846,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA210180", + "sms:displayName": "CA214411", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA210181", + "@id": "bts:CA215709", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA210181", + "rdfs:label": "CA215709", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222318,15 +232881,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA210181", + "sms:displayName": "CA215709", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA210184", + "@id": "bts:CA215794", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA210184", + "rdfs:label": "CA215794", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222353,15 +232916,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA210184", + "sms:displayName": "CA215794", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA210190", + "@id": "bts:CA215798", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA210190", + "rdfs:label": "CA215798", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222388,15 +232951,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA210190", + "sms:displayName": "CA215798", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214282", + "@id": "bts:CA215845", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214282", + "rdfs:label": "CA215845", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222423,15 +232986,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214282", + "sms:displayName": "CA215845", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214292", + "@id": "bts:CA215848", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214292", + "rdfs:label": "CA215848", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222458,15 +233021,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214292", + "sms:displayName": "CA215848", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214297", + "@id": "bts:CA217297", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214297", + "rdfs:label": "CA217297", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222493,15 +233056,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214297", + "sms:displayName": "CA217297", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214300", + "@id": "bts:CA217376", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214300", + "rdfs:label": "CA217376", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222528,15 +233091,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214300", + "sms:displayName": "CA217376", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214354", + "@id": "bts:CA217377", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214354", + "rdfs:label": "CA217377", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222563,15 +233126,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214354", + "sms:displayName": "CA217377", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214369", + "@id": "bts:CA217378", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214369", + "rdfs:label": "CA217378", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222598,15 +233161,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214369", + "sms:displayName": "CA217378", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214381", + "@id": "bts:CA217450", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214381", + "rdfs:label": "CA217450", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222633,15 +233196,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214381", + "sms:displayName": "CA217450", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA214411", + "@id": "bts:CA217456", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA214411", + "rdfs:label": "CA217456", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222668,15 +233231,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA214411", + "sms:displayName": "CA217456", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA215709", + "@id": "bts:CA217514", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA215709", + "rdfs:label": "CA217514", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222703,15 +233266,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA215709", + "sms:displayName": "CA217514", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA215794", + "@id": "bts:CA217613", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA215794", + "rdfs:label": "CA217613", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222738,15 +233301,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA215794", + "sms:displayName": "CA217613", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA215798", + "@id": "bts:CA217617", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA215798", + "rdfs:label": "CA217617", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222773,15 +233336,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA215798", + "sms:displayName": "CA217617", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA215845", + "@id": "bts:CA217655", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA215845", + "rdfs:label": "CA217655", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222808,15 +233371,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA215845", + "sms:displayName": "CA217655", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA215848", + "@id": "bts:CA220378", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA215848", + "rdfs:label": "CA220378", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222843,15 +233406,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA215848", + "sms:displayName": "CA220378", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217297", + "@id": "bts:CA223976", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217297", + "rdfs:label": "CA223976", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222878,15 +233441,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217297", + "sms:displayName": "CA223976", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217376", + "@id": "bts:CA224012", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217376", + "rdfs:label": "CA224012", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222913,15 +233476,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217376", + "sms:displayName": "CA224012", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217377", + "@id": "bts:CA224013", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217377", + "rdfs:label": "CA224013", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222948,15 +233511,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217377", + "sms:displayName": "CA224013", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217378", + "@id": "bts:CA224044", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217378", + "rdfs:label": "CA224044", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -222983,15 +233546,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217378", + "sms:displayName": "CA224044", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217450", + "@id": "bts:CA225088", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217450", + "rdfs:label": "CA225088", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223018,15 +233581,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217450", + "sms:displayName": "CA225088", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217456", + "@id": "bts:CA225566", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217456", + "rdfs:label": "CA225566", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223053,15 +233616,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217456", + "sms:displayName": "CA225566", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217514", + "@id": "bts:CA227136", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217514", + "rdfs:label": "CA227136", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223088,15 +233651,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217514", + "sms:displayName": "CA227136", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217613", + "@id": "bts:CA227544", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217613", + "rdfs:label": "CA227544", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223123,15 +233686,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217613", + "sms:displayName": "CA227544", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217617", + "@id": "bts:CA227550", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217617", + "rdfs:label": "CA227550", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223158,15 +233721,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217617", + "sms:displayName": "CA227550", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA217655", + "@id": "bts:CA228608", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA217655", + "rdfs:label": "CA228608", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223193,15 +233756,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA217655", + "sms:displayName": "CA228608", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA220378", + "@id": "bts:CA228963", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA220378", + "rdfs:label": "CA228963", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223228,15 +233791,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA220378", + "sms:displayName": "CA228963", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA223976", + "@id": "bts:CA231978", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA223976", + "rdfs:label": "CA231978", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223263,15 +233826,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA223976", + "sms:displayName": "CA231978", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA224012", + "@id": "bts:CA232137", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA224012", + "rdfs:label": "CA232137", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223298,15 +233861,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA224012", + "sms:displayName": "CA232137", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA224013", + "@id": "bts:CA232161", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA224013", + "rdfs:label": "CA232161", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223333,15 +233896,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA224013", + "sms:displayName": "CA232161", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA224044", + "@id": "bts:CA232209", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA224044", + "rdfs:label": "CA232209", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223368,15 +233931,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA224044", + "sms:displayName": "CA232209", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA225088", + "@id": "bts:CA232216", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA225088", + "rdfs:label": "CA232216", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223403,15 +233966,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA225088", + "sms:displayName": "CA232216", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA225566", + "@id": "bts:CA232382", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA225566", + "rdfs:label": "CA232382", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223438,15 +234001,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA225566", + "sms:displayName": "CA232382", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA227136", + "@id": "bts:CA232517", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA227136", + "rdfs:label": "CA232517", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223473,15 +234036,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA227136", + "sms:displayName": "CA232517", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA227544", + "@id": "bts:CA234787", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA227544", + "rdfs:label": "CA234787", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223508,15 +234071,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA227544", + "sms:displayName": "CA234787", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA227550", + "@id": "bts:CA235747", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA227550", + "rdfs:label": "CA235747", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223543,15 +234106,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA227550", + "sms:displayName": "CA235747", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA228608", + "@id": "bts:CA238475", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA228608", + "rdfs:label": "CA238475", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223578,15 +234141,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA228608", + "sms:displayName": "CA238475", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA228963", + "@id": "bts:CA238720", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA228963", + "rdfs:label": "CA238720", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223613,15 +234176,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA228963", + "sms:displayName": "CA238720", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA231978", + "@id": "bts:CA238728", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA231978", + "rdfs:label": "CA238728", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223648,15 +234211,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA231978", + "sms:displayName": "CA238728", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA232137", + "@id": "bts:CA240301", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA232137", + "rdfs:label": "CA240301", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223683,15 +234246,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA232137", + "sms:displayName": "CA240301", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA232161", + "@id": "bts:CA241137", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA232161", + "rdfs:label": "CA241137", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223718,15 +234281,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA232161", + "sms:displayName": "CA241137", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA232209", + "@id": "bts:CA241927", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA232209", + "rdfs:label": "CA241927", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223753,15 +234316,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA232209", + "sms:displayName": "CA241927", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA232216", + "@id": "bts:CA243004", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA232216", + "rdfs:label": "CA243004", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223788,15 +234351,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA232216", + "sms:displayName": "CA243004", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA232382", + "@id": "bts:CA243007", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA232382", + "rdfs:label": "CA243007", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223823,15 +234386,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA232382", + "sms:displayName": "CA243007", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA232517", + "@id": "bts:CA243072", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA232517", + "rdfs:label": "CA243072", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223858,15 +234421,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA232517", + "sms:displayName": "CA243072", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA234787", + "@id": "bts:CA243073", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA234787", + "rdfs:label": "CA243073", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223893,15 +234456,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA234787", + "sms:displayName": "CA243073", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA235747", + "@id": "bts:CA243075", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA235747", + "rdfs:label": "CA243075", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223928,15 +234491,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA235747", + "sms:displayName": "CA243075", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA238475", + "@id": "bts:CA244100", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA238475", + "rdfs:label": "CA244100", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223963,15 +234526,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA238475", + "sms:displayName": "CA244100", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA238720", + "@id": "bts:CA244101", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA238720", + "rdfs:label": "CA244101", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -223998,15 +234561,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA238720", + "sms:displayName": "CA244101", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA238728", + "@id": "bts:CA244107", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA238728", + "rdfs:label": "CA244107", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224033,15 +234596,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA238728", + "sms:displayName": "CA244107", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA240301", + "@id": "bts:CA244109", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA240301", + "rdfs:label": "CA244109", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224068,15 +234631,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA240301", + "sms:displayName": "CA244109", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA241137", + "@id": "bts:CA245313", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA241137", + "rdfs:label": "CA245313", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224103,15 +234666,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA241137", + "sms:displayName": "CA245313", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA241927", + "@id": "bts:CA248890", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA241927", + "rdfs:label": "CA248890", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224138,15 +234701,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA241927", + "sms:displayName": "CA248890", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA243004", + "@id": "bts:CA249799", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA243004", + "rdfs:label": "CA249799", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224173,15 +234736,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA243004", + "sms:displayName": "CA249799", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA243007", + "@id": "bts:CA250040", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA243007", + "rdfs:label": "CA250040", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224208,15 +234771,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA243007", + "sms:displayName": "CA250040", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA243072", + "@id": "bts:CA250044", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA243072", + "rdfs:label": "CA250044", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224243,15 +234806,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA243072", + "sms:displayName": "CA250044", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA243073", + "@id": "bts:CA250046", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA243073", + "rdfs:label": "CA250046", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224278,15 +234841,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA243073", + "sms:displayName": "CA250046", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA243075", + "@id": "bts:CA250481", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA243075", + "rdfs:label": "CA250481", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224313,15 +234876,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA243075", + "sms:displayName": "CA250481", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA244100", + "@id": "bts:CA251443", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA244100", + "rdfs:label": "CA251443", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224348,15 +234911,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA244100", + "sms:displayName": "CA251443", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA244101", + "@id": "bts:CA253248", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA244101", + "rdfs:label": "CA253248", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224383,15 +234946,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA244101", + "sms:displayName": "CA253248", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA244107", + "@id": "bts:CA253472", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA244107", + "rdfs:label": "CA253472", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224418,15 +234981,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA244107", + "sms:displayName": "CA253472", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA244109", + "@id": "bts:CA253540", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA244109", + "rdfs:label": "CA253540", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224453,15 +235016,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA244109", + "sms:displayName": "CA253540", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA245313", + "@id": "bts:CA253547", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA245313", + "rdfs:label": "CA253547", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224488,15 +235051,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA245313", + "sms:displayName": "CA253547", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA248890", + "@id": "bts:CA253553", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA248890", + "rdfs:label": "CA253553", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224523,15 +235086,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA248890", + "sms:displayName": "CA253553", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA249799", + "@id": "bts:CA254200", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA249799", + "rdfs:label": "CA254200", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224558,15 +235121,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA249799", + "sms:displayName": "CA254200", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA250040", + "@id": "bts:CA254886", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA250040", + "rdfs:label": "CA254886", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224593,15 +235156,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA250040", + "sms:displayName": "CA254886", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA250044", + "@id": "bts:CA256054", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA250044", + "rdfs:label": "CA256054", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224628,15 +235191,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA250044", + "sms:displayName": "CA256054", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA250046", + "@id": "bts:CA256481", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA250046", + "rdfs:label": "CA256481", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224663,15 +235226,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA250046", + "sms:displayName": "CA256481", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA250481", + "@id": "bts:CA260432", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA250481", + "rdfs:label": "CA260432", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224698,15 +235261,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA250481", + "sms:displayName": "CA260432", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA251443", + "@id": "bts:CA261694", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA251443", + "rdfs:label": "CA261694", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224733,15 +235296,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA251443", + "sms:displayName": "CA261694", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA253248", + "@id": "bts:CA261701", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA253248", + "rdfs:label": "CA261701", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224768,15 +235331,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA253248", + "sms:displayName": "CA261701", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA253472", + "@id": "bts:CA261717", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA253472", + "rdfs:label": "CA261717", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224803,15 +235366,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA253472", + "sms:displayName": "CA261717", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA253540", + "@id": "bts:CA261719", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA253540", + "rdfs:label": "CA261719", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224838,15 +235401,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA253540", + "sms:displayName": "CA261719", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA253547", + "@id": "bts:CA261822", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA253547", + "rdfs:label": "CA261822", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224873,15 +235436,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA253547", + "sms:displayName": "CA261822", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA253553", + "@id": "bts:CA261841", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA253553", + "rdfs:label": "CA261841", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224908,15 +235471,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA253553", + "sms:displayName": "CA261841", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA254200", + "@id": "bts:CA261842", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA254200", + "rdfs:label": "CA261842", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224943,15 +235506,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA254200", + "sms:displayName": "CA261842", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA254886", + "@id": "bts:CA263001", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA254886", + "rdfs:label": "CA263001", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -224978,15 +235541,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA254886", + "sms:displayName": "CA263001", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA256054", + "@id": "bts:CA264583", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA256054", + "rdfs:label": "CA264583", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225013,15 +235576,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA256054", + "sms:displayName": "CA264583", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA256481", + "@id": "bts:CA264610", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA256481", + "rdfs:label": "CA264610", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225048,15 +235611,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA256481", + "sms:displayName": "CA264610", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA260432", + "@id": "bts:CA264611", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA260432", + "rdfs:label": "CA264611", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225083,15 +235646,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA260432", + "sms:displayName": "CA264611", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA261694", + "@id": "bts:CA264620", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA261694", + "rdfs:label": "CA264620", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225118,15 +235681,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA261694", + "sms:displayName": "CA264620", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA261701", + "@id": "bts:CA267170", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA261701", + "rdfs:label": "CA267170", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225153,15 +235716,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA261701", + "sms:displayName": "CA267170", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA261717", + "@id": "bts:CA268069", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA261717", + "rdfs:label": "CA268069", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225188,15 +235751,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA261717", + "sms:displayName": "CA268069", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA261719", + "@id": "bts:CA268072", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA261719", + "rdfs:label": "CA268072", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225223,15 +235786,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA261719", + "sms:displayName": "CA268072", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA261822", + "@id": "bts:CA268083", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA261822", + "rdfs:label": "CA268083", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225258,15 +235821,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA261822", + "sms:displayName": "CA268083", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA261841", + "@id": "bts:CA268084", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA261841", + "rdfs:label": "CA268084", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225293,15 +235856,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA261841", + "sms:displayName": "CA268084", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA261842", + "@id": "bts:CA271273", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA261842", + "rdfs:label": "CA271273", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225328,15 +235891,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA261842", + "sms:displayName": "CA271273", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA263001", + "@id": "bts:CA274492", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA263001", + "rdfs:label": "CA274492", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225363,15 +235926,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA263001", + "sms:displayName": "CA274492", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA264583", + "@id": "bts:CA274494", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA264583", + "rdfs:label": "CA274494", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225398,15 +235961,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA264583", + "sms:displayName": "CA274494", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA264610", + "@id": "bts:CA274499", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA264610", + "rdfs:label": "CA274499", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225433,15 +235996,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA264610", + "sms:displayName": "CA274499", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA264611", + "@id": "bts:CA274502", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA264611", + "rdfs:label": "CA274502", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225468,15 +236031,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA264611", + "sms:displayName": "CA274502", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA264620", + "@id": "bts:CA274509", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA264620", + "rdfs:label": "CA274509", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225503,15 +236066,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA264620", + "sms:displayName": "CA274509", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA267170", + "@id": "bts:CA275808", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA267170", + "rdfs:label": "CA275808", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225538,15 +236101,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA267170", + "sms:displayName": "CA275808", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA268069", + "@id": "bts:CA279408", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA268069", + "rdfs:label": "CA279408", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225573,15 +236136,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA268069", + "sms:displayName": "CA279408", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA268072", + "@id": "bts:CA279560", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA268072", + "rdfs:label": "CA279560", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225608,15 +236171,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA268072", + "sms:displayName": "CA279560", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA268083", + "@id": "bts:CA280984", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA268083", + "rdfs:label": "CA280984", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225643,15 +236206,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA268083", + "sms:displayName": "CA280984", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA268084", + "@id": "bts:CA280849", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA268084", + "rdfs:label": "CA280849", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225678,15 +236241,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA268084", + "sms:displayName": "CA280849", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA271273", + "@id": "bts:CA280829", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA271273", + "rdfs:label": "CA280829", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225713,15 +236276,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA271273", + "sms:displayName": "CA280829", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274492", + "@id": "bts:CA284090", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274492", + "rdfs:label": "CA284090", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225748,15 +236311,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274492", + "sms:displayName": "CA284090", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274494", + "@id": "bts:CA284086", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274494", + "rdfs:label": "CA284086", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225783,15 +236346,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274494", + "sms:displayName": "CA284086", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274499", + "@id": "bts:CA274504", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274499", + "rdfs:label": "CA274504", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225818,15 +236381,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274499", + "sms:displayName": "CA274504", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274502", + "@id": "bts:CA283114", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274502", + "rdfs:label": "CA283114", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225853,15 +236416,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274502", + "sms:displayName": "CA283114", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274509", + "@id": "bts:CA274507", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274509", + "rdfs:label": "CA274507", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225888,15 +236451,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274509", + "sms:displayName": "CA274507", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA275808", + "@id": "bts:CA274506", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA275808", + "rdfs:label": "CA274506", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225923,15 +236486,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA275808", + "sms:displayName": "CA274506", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA279408", + "@id": "bts:CA274511", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA279408", + "rdfs:label": "CA274511", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225958,15 +236521,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA279408", + "sms:displayName": "CA274511", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA279560", + "@id": "bts:CA282451", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA279560", + "rdfs:label": "CA282451", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -225993,15 +236556,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA279560", + "sms:displayName": "CA282451", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA280984", + "@id": "bts:CA284085", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA280984", + "rdfs:label": "CA284085", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226028,15 +236591,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA280984", + "sms:displayName": "CA284085", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA280849", + "@id": "bts:CA283749", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA280849", + "rdfs:label": "CA283749", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226063,15 +236626,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA280849", + "sms:displayName": "CA283749", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA280829", + "@id": "bts:CA289564", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA280829", + "rdfs:label": "CA289564", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226098,15 +236661,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA280829", + "sms:displayName": "CA289564", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA284090", + "@id": "bts:CA293470", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA284090", + "rdfs:label": "CA293470", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226133,15 +236696,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA284090", + "sms:displayName": "CA293470", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA284086", + "@id": "bts:CA279722", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA284086", + "rdfs:label": "CA279722", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226168,15 +236731,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA284086", + "sms:displayName": "CA279722", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274504", + "@id": "bts:CA290115", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274504", + "rdfs:label": "CA290115", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226203,15 +236766,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274504", + "sms:displayName": "CA290115", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA283114", + "@id": "bts:CA279948", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA283114", + "rdfs:label": "CA279948", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226238,15 +236801,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA283114", + "sms:displayName": "CA279948", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274507", + "@id": "bts:CA281216", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274507", + "rdfs:label": "CA281216", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226273,15 +236836,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274507", + "sms:displayName": "CA281216", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274506", + "@id": "bts:CA292382", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274506", + "rdfs:label": "CA292382", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226308,15 +236871,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274506", + "sms:displayName": "CA292382", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA274511", + "@id": "bts:CA290442", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA274511", + "rdfs:label": "CA290442", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226343,15 +236906,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA274511", + "sms:displayName": "CA290442", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CA282451", + "@id": "bts:CA293853", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CA282451", + "rdfs:label": "CA293853", "rdfs:subClassOf": [ { "@id": "bts:DatasetGrantNumber" @@ -226378,7 +236941,7 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CA282451", + "sms:displayName": "CA293853", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -228888,6 +239451,9 @@ { "@id": "bts:GrantStartDate" }, + { + "@id": "bts:GrantEndDate" + }, { "@id": "bts:NIHRePORTERLink" }, @@ -234131,6 +244697,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Resource Grant Number", @@ -241042,7 +251641,7 @@ { "@id": "bts:FileAssay", "@type": "rdfs:Class", - "rdfs:comment": "The assay the file is representative of.", + "rdfs:comment": "The assay(s) the file is representative of. Multiple values permitted, comma separated.", "rdfs:label": "FileAssay", "rdfs:subClassOf": [ { @@ -241068,6 +251667,9 @@ { "@id": "bts:3C-qPCR" }, + { + "@id": "bts:3DATAC-PALM" + }, { "@id": "bts:3DBioprinting" }, @@ -242189,11 +252791,16 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "File Assay", "sms:required": "sms:true", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { "@id": "bts:FileLevel", @@ -242417,6 +253024,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -244638,6 +255248,9 @@ { "@id": "bts:DB" }, + { + "@id": "bts:DCC" + }, { "@id": "bts:DSStore" }, @@ -244875,7 +255488,7 @@ { "@id": "bts:FileLongitudinalEventType", "@type": "rdfs:Class", - "rdfs:comment": "The type of event associated with collection of the data contained in the file (e.g., time increment, treatment time elapsed)", + "rdfs:comment": "The type of event to which File Longitudinal Total Time Elapsed is related", "rdfs:label": "FileLongitudinalEventType", "rdfs:subClassOf": [ { @@ -248677,15 +259290,1001 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of female genital organs", + "sms:displayName": "Overlapping lesion of female genital organs", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofesophagus", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofesophagus", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Overlapping lesion of esophagus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofendocrineglandsandrelatedstructures", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofendocrineglandsandrelatedstructures", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Overlapping lesion of endocrine glands and related structures", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofdigestivesystem", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofdigestivesystem", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Overlapping lesion of digestive system", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Softpalate;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Softpalate;NOS", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Soft palate; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Smallintestine;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Smallintestine;NOS", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Small intestine; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skin;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skin;NOS", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin; NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skinofupperlimbandshoulder", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skinofupperlimbandshoulder", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin of upper limb and shoulder", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skinoftrunk", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skinoftrunk", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin of trunk", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skinofscalpandneck", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skinofscalpandneck", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin of scalp and neck", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skinofotherandunspecifiedpartsofface", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skinofotherandunspecifiedpartsofface", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin of other and unspecified parts of face", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skinoflowerlimbandhip", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skinoflowerlimbandhip", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin of lower limb and hip", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Skinoflip;NOS", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Skinoflip;NOS", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Skin of lip; 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NOS", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Rectosigmoidjunction", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Rectosigmoidjunction", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Rectosigmoid junction", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Pyriformsinus", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Pyriformsinus", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Pyriform sinus", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Prostategland", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Prostategland", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Prostate gland", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Prepuce", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Prepuce", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Prepuce", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Posteriorwalloforopharynx", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Posteriorwalloforopharynx", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Posterior wall of oropharynx", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Posteriorwallofnasopharynx", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Posteriorwallofnasopharynx", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Posterior wall of nasopharynx", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofcorpusuteri", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofcorpusuteri", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Overlapping lesion of corpus uteri", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofconnective;subcutaneousandothersofttissues", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofconnective;subcutaneousandothersofttissues", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Overlapping lesion of connective; subcutaneous and other soft tissues", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofcolon", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofcolon", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Overlapping lesion of colon", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Overlappinglesionofcervixuteri", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Overlappinglesionofcervixuteri", + "rdfs:subClassOf": [ + { + "@id": "bts:FileAnatomicSite" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Overlapping lesion of cervix uteri", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofesophagus", + "@id": "bts:Overlappinglesionofbreast", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofesophagus", + "rdfs:label": "Overlappinglesionofbreast", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248694,15 +260293,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of esophagus", + "sms:displayName": "Overlapping lesion of breast", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofendocrineglandsandrelatedstructures", + "@id": "bts:Overlappinglesionofbrain", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofendocrineglandsandrelatedstructures", + "rdfs:label": "Overlappinglesionofbrain", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248711,15 +260310,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of endocrine glands and related structures", + "sms:displayName": "Overlapping lesion of brain", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofdigestivesystem", + "@id": "bts:Overlappinglesionofbladder", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofdigestivesystem", + "rdfs:label": "Overlappinglesionofbladder", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248728,15 +260327,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of digestive system", + "sms:displayName": "Overlapping lesion of bladder", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Softpalate;NOS", + "@id": "bts:Overlappinglesionofbiliarytract", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Softpalate;NOS", + "rdfs:label": "Overlappinglesionofbiliarytract", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248745,15 +260344,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Soft palate; NOS", + "sms:displayName": "Overlapping lesion of biliary tract", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Smallintestine;NOS", + "@id": "bts:Overlappinglesionofaccessorysinuses", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Smallintestine;NOS", + "rdfs:label": "Overlappinglesionofaccessorysinuses", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248762,15 +260361,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Small intestine; NOS", + "sms:displayName": "Overlapping lesion of accessory sinuses", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Skin;NOS", + "@id": "bts:Overlappinglesionofrectum;anusandanalcanal", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Skin;NOS", + "rdfs:label": "Overlappinglesionofrectum;anusandanalcanal", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248779,15 +260378,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin; NOS", + "sms:displayName": "Overlapping lesion of rectum; anus and anal canal", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Skinofupperlimbandshoulder", + "@id": "bts:Overlappinglesionofperipheralnervesandautonomicnervoussystem", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Skinofupperlimbandshoulder", + "rdfs:label": "Overlappinglesionofperipheralnervesandautonomicnervoussystem", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248796,15 +260395,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin of upper limb and shoulder", + "sms:displayName": "Overlapping lesion of peripheral nerves and autonomic nervous system", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Skinoftrunk", + "@id": "bts:Overlappinglesionofheart;mediastinumandpleura", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Skinoftrunk", + "rdfs:label": "Overlappinglesionofheart;mediastinumandpleura", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248813,15 +260412,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin of trunk", + "sms:displayName": "Overlapping lesion of heart; mediastinum and pleura", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Skinofscalpandneck", + "@id": "bts:Overlappinglesionofeyeandadnexa", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Skinofscalpandneck", + "rdfs:label": "Overlappinglesionofeyeandadnexa", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248830,15 +260429,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin of scalp and neck", + "sms:displayName": "Overlapping lesion of eye and adnexa", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Skinofotherandunspecifiedpartsofface", + "@id": "bts:Overlappinglesionofbrainandcentralnervoussystem", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Skinofotherandunspecifiedpartsofface", + "rdfs:label": "Overlappinglesionofbrainandcentralnervoussystem", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248847,15 +260446,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin of other and unspecified parts of face", + "sms:displayName": "Overlapping lesion of brain and central nervous system", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Skinoflowerlimbandhip", + "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilageoflimbs", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Skinoflowerlimbandhip", + "rdfs:label": "Overlappinglesionofbones;jointsandarticularcartilageoflimbs", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248864,15 +260463,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin of lower limb and hip", + "sms:displayName": "Overlapping lesion of bones; joints and articular cartilage of limbs", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Skinoflip;NOS", + "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilage", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Skinoflip;NOS", + "rdfs:label": "Overlappinglesionofbones;jointsandarticularcartilage", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248881,15 +260480,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Skin of lip; NOS", + "sms:displayName": "Overlapping lesion of bones; joints and articular cartilage", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Sigmoidcolon", + "@id": "bts:Posteriorwallofhypopharynx", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Sigmoidcolon", + "rdfs:label": "Posteriorwallofhypopharynx", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248898,15 +260497,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Sigmoid colon", + "sms:displayName": "Posterior wall of hypopharynx", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Scrotum;NOS", + "@id": "bts:Posteriorwallofbladder", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Scrotum;NOS", + "rdfs:label": "Posteriorwallofbladder", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248915,15 +260514,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Scrotum; NOS", + "sms:displayName": "Posterior wall of bladder", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Roundligament", + "@id": "bts:Posteriormediastinum", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Roundligament", + "rdfs:label": "Posteriormediastinum", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248932,15 +260531,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Round ligament", + "sms:displayName": "Posterior mediastinum", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Retromolararea", + "@id": "bts:Postcricoidregion", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Retromolararea", + "rdfs:label": "Postcricoidregion", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248949,15 +260548,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Retromolar area", + "sms:displayName": "Postcricoid region", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Sublingualgland", + "@id": "bts:Pleura;NOS", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Sublingualgland", + "rdfs:label": "Pleura;NOS", "rdfs:subClassOf": [ { "@id": "bts:FileAnatomicSite" @@ -248966,1001 +260565,1323 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Sublingual gland", + "sms:displayName": "Pleura; NOS", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Stomach;NOS", + "@id": "bts:NanoStringGeoMxAuxiliaryFiles", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Stomach;NOS", + "rdfs:comment": "Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.", + "rdfs:label": "NanoStringGeoMxAuxiliaryFiles", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Stomach; NOS", + "sms:displayName": "NanoString GeoMx Auxiliary Files", "sms:required": "sms:false", + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesId" + }, + { + "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile" + }, + { + "@id": "bts:SynapseIDofGeoMxDSPPKCFile" + }, + { + "@id": "bts:SynapseIDofGeoMxLabWorksheetFile" + }, + { + "@id": "bts:SynapseIDofGeoMxDSPConfigFile" + } + ], "sms:validationRules": [] }, { - "@id": "bts:Splenicflexureofcolon", + "@id": "bts:NanoStringGeoMxAuxiliaryFilesId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Splenicflexureofcolon", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxAuxiliaryFilesId", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Splenic flexure of colon", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "NanoStringGeoMxAuxiliaryFiles_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:Spinalmeninges", + "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Spinalmeninges", + "rdfs:comment": "Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.", + "rdfs:label": "SynapseIDofGeoMxDSPROISegmentAnnotationFile", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Spinal meninges", + "sms:displayName": "Synapse ID of GeoMx DSP ROI Segment Annotation File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:Spinalcord", + "@id": "bts:SynapseIDofGeoMxDSPPKCFile", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Spinalcord", + "rdfs:comment": "The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.", + "rdfs:label": "SynapseIDofGeoMxDSPPKCFile", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Spinal cord", + "sms:displayName": "Synapse ID of GeoMx DSP PKC File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:Sphenoidsinus", + "@id": "bts:SynapseIDofGeoMxLabWorksheetFile", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Sphenoidsinus", + "rdfs:comment": "Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.", + "rdfs:label": "SynapseIDofGeoMxLabWorksheetFile", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Sphenoid sinus", + "sms:displayName": "Synapse ID of GeoMx Lab Worksheet File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:Spermaticcord", + "@id": "bts:SynapseIDofGeoMxDSPConfigFile", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Spermaticcord", + "rdfs:comment": "Synapse ID of config.ini file generated by the GeoMx DSP workflow.", + "rdfs:label": "SynapseIDofGeoMxDSPConfigFile", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Spermatic cord", + "sms:displayName": "Synapse ID of GeoMx DSP Config File", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like", + "regex match syn\\d+" + ] }, { - "@id": "bts:Shortbonesoflowerlimbandassociatedjoints", + "@id": "bts:NanoStringGeoMxDSPImaging", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Shortbonesoflowerlimbandassociatedjoints", + "rdfs:comment": "Images acquired by the GeoMx instrument", + "rdfs:label": "NanoStringGeoMxDSPImaging", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Short bones of lower limb and associated joints", + "sms:displayName": "NanoString GeoMx DSP Imaging", "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:FileView" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFiles" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:NanoStringGeoMxDSPImagingId" + }, + { + "@id": "bts:Filename" + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1Key" + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel2Key" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + }, + { + "@id": "bts:GeoMxImagingChannelNames" + }, + { + "@id": "bts:GeoMxImagingAOICoordinates" + }, + { + "@id": "bts:ImagingChannelKey" + }, + { + "@id": "bts:ImageAssayType" + }, + { + "@id": "bts:ImageProtocolLink" + }, + { + "@id": "bts:ImagePlatformModel" + }, + { + "@id": "bts:ImagePlatformManufacturer" + }, + { + "@id": "bts:ImageSoftware" + }, + { + "@id": "bts:ImageObjective" + }, + { + "@id": "bts:ImageNominalMagnification" + }, + { + "@id": "bts:ImageLenseAperture" + }, + { + "@id": "bts:ImageWorkingDistance" + }, + { + "@id": "bts:ImageWorkingDistanceUnit" + }, + { + "@id": "bts:ImageImmersionType" + }, + { + "@id": "bts:ImagePyramidal" + }, + { + "@id": "bts:ImageZstack" + }, + { + "@id": "bts:ImageTimeseries" + }, + { + "@id": "bts:ImageFOVIndex" + }, + { + "@id": "bts:ImageFOVSizeX" + }, + { + "@id": "bts:ImageFOVSizeXUnit" + }, + { + "@id": "bts:ImageFOVSizeY" + }, + { + "@id": "bts:ImageFOVSizeYUnit" + }, + { + "@id": "bts:ImageFrameAveraging" + }, + { + "@id": "bts:ImageIdentifier" + }, + { + "@id": "bts:ImageDimensionOrder" + }, + { + "@id": "bts:ImagePhysicalSizeX" + }, + { + "@id": "bts:ImagePhysicalSizeXUnit" + }, + { + "@id": "bts:ImagePhysicalSizeY" + }, + { + "@id": "bts:ImagePhysicalSizeYUnit" + }, + { + "@id": "bts:ImagePhysicalSizeZ" + }, + { + "@id": "bts:ImagePhysicalSizeZUnit" + }, + { + "@id": "bts:ImagePixelsBigEndian" + }, + { + "@id": "bts:ImagePlaneCount" + }, + { + "@id": "bts:ImageChannelSize" + }, + { + "@id": "bts:ImageNumberofTimepoints" + }, + { + "@id": "bts:ImageXPixels" + }, + { + "@id": "bts:ImageYPixels" + }, + { + "@id": "bts:ImageZPixels" + }, + { + "@id": "bts:ImagePixelType" + } + ], "sms:validationRules": [] }, { - "@id": "bts:Waldeyerring", + "@id": "bts:NanoStringGeoMxDSPImagingId", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Waldeyerring", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxDSPImagingId", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Waldeyer ring", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "NanoStringGeoMxDSPImaging_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:Vulva;NOS", + "@id": "bts:NanoStringGeoMxDSPLevel1Key", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Vulva;NOS", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel1Key", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Geomx" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Vulva; NOS", + "sms:displayName": "NanoStringGeoMxDSPLevel1 Key", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Vestibuleofmouth", + "@id": "bts:NanoStringGeoMxDSPLevel2Key", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Vestibuleofmouth", + "rdfs:comment": "Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxDSPLevel2Key", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Geomx" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Vestibule of mouth", + "sms:displayName": "NanoStringGeoMxDSPLevel2 Key", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Vertebralcolumn", + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Vertebralcolumn", + "rdfs:comment": "Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMxAuxiliaryFilesKey", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Geomx" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Vertebral column", + "sms:displayName": "NanoStringGeoMxAuxiliaryFiles Key", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Vagina;NOS", + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Vagina;NOS", + "rdfs:comment": "Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "NanoStringGeoMXROISegmentAnnotationKey", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Geomx" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Vagina; NOS", + "sms:displayName": "NanoStringGeoMXROISegmentAnnotation Key", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Uterus;NOS", + "@id": "bts:GeoMxImagingChannelNames", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Uterus;NOS", + "rdfs:comment": "Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.", + "rdfs:label": "GeoMxImagingChannelNames", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Uterus; NOS", + "sms:displayName": "GeoMx Imaging Channel Names", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Uterineadnexa", + "@id": "bts:GeoMxImagingAOICoordinates", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Uterineadnexa", + "rdfs:comment": "Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.", + "rdfs:label": "GeoMxImagingAOICoordinates", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Uterine adnexa", + "sms:displayName": "GeoMx Imaging AOI Coordinates", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Urinarysystem;NOS", + "@id": "bts:ImagingChannelKey", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Urinarysystem;NOS", + "rdfs:comment": "Unique ImagingChannel_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", + "rdfs:label": "ImagingChannelKey", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Urinary system; NOS", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "ImagingChannel Key", + "sms:required": "sms:true", + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Uretericorifice", + "@id": "bts:ImageAssayType", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Uretericorifice", + "rdfs:comment": "Type of imaging assay", + "rdfs:label": "ImageAssayType", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Ureteric orifice", - "sms:required": "sms:false", + "schema:rangeIncludes": [ + { + "@id": "bts:CODEX" + }, + { + "@id": "bts:CyCIF" + }, + { + "@id": "bts:ExSeq" + }, + { + "@id": "bts:GeoMX-DSP" + }, + { + "@id": "bts:H&E" + }, + { + "@id": "bts:IHC" + }, + { + "@id": "bts:IMC" + }, + { + "@id": "bts:MERFISH" + }, + { + "@id": "bts:MIBI" + }, + { + "@id": "bts:MIHC" + }, + { + "@id": "bts:MxIF" + }, + { + "@id": "bts:NotApplicable" + }, + { + "@id": "bts:SABER" + }, + { + "@id": "bts:T-CyCIF" + } + ], + "sms:displayName": "Image Assay Type", + "sms:required": "sms:true", "sms:validationRules": [] }, { - "@id": "bts:Upper-outerquadrantofbreast", + "@id": "bts:ImageProtocolLink", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Upper-outerquadrantofbreast", + "rdfs:comment": "Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.", + "rdfs:label": "ImageProtocolLink", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Upper-outer quadrant of breast", + "sms:displayName": "Image Protocol Link", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Upper-innerquadrantofbreast", + "@id": "bts:ImagePlatformModel", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Upper-innerquadrantofbreast", + "rdfs:comment": "The specific model of the instrument used to carry out an imaging experiment.", + "rdfs:label": "ImagePlatformModel", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Upper-inner quadrant of breast", + "sms:displayName": "Image Platform Model", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Upperthirdofesophagus", + "@id": "bts:ImagePlatformManufacturer", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Upperthirdofesophagus", + "rdfs:comment": "Producer of the imaging equipment that was used to generate the digital image", + "rdfs:label": "ImagePlatformManufacturer", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Upper third of esophagus", + "sms:displayName": "Image Platform Manufacturer", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Shortbonesofupperlimbandassociatedjoints", + "@id": "bts:ImageSoftware", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Shortbonesofupperlimbandassociatedjoints", + "rdfs:comment": "The name of the software package that was used to capture, generate, and process the image.", + "rdfs:label": "ImageSoftware", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Short bones of upper limb and associated joints", + "sms:displayName": "Image Software", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Rib;sternum;clavicleandassociatedjoints", + "@id": "bts:ImageObjective", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rib;sternum;clavicleandassociatedjoints", + "rdfs:comment": "Objective lens identifier", + "rdfs:label": "ImageObjective", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Rib; sternum; clavicle and associated joints", + "sms:displayName": "Image Objective", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder", + "@id": "bts:ImageNominalMagnification", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder", + "rdfs:comment": "The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units)", + "rdfs:label": "ImageNominalMagnification", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Peripheral nerves and autonomic nervous system of upper limb and shoulder", + "sms:displayName": "Image Nominal Magnification", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Peripheralnervesandautonomicnervoussystemoftrunk;NOS", + "@id": "bts:ImageLenseAperture", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Peripheralnervesandautonomicnervoussystemoftrunk;NOS", + "rdfs:comment": "The numerical aperture of the lens. Floating point value > 0.", + "rdfs:label": "ImageLenseAperture", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Peripheral nerves and autonomic nervous system of trunk; NOS", + "sms:displayName": "Image Lense Aperture", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofthorax", + "@id": "bts:ImageWorkingDistance", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Peripheralnervesandautonomicnervoussystemofthorax", + "rdfs:comment": "The working distance of the lens, expressed as a floating point number. Floating point > 0.", + "rdfs:label": "ImageWorkingDistance", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Peripheral nerves and autonomic nervous system of thorax", + "sms:displayName": "Image Working Distance", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofpelvis", + "@id": "bts:ImageWorkingDistanceUnit", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Peripheralnervesandautonomicnervoussystemofpelvis", + "rdfs:comment": "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageWorkingDistanceUnit", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Peripheral nerves and autonomic nervous system of pelvis", + "schema:rangeIncludes": [ + { + "@id": "bts:Cm" + }, + { + "@id": "bts:Mm" + }, + { + "@id": "bts:Μm" + }, + { + "@id": "bts:Nm" + }, + { + "@id": "bts:Γ…" + } + ], + "sms:displayName": "Image Working Distance Unit", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Peripheralnervesandautonomicnervoussystemoflowerlimbandhip", + "@id": "bts:ImageImmersionType", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Peripheralnervesandautonomicnervoussystemoflowerlimbandhip", + "rdfs:comment": "Immersion medium", + "rdfs:label": "ImageImmersionType", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Peripheral nerves and autonomic nervous system of lower limb and hip", + "schema:rangeIncludes": [ + { + "@id": "bts:Air" + }, + { + "@id": "bts:Oil" + }, + { + "@id": "bts:Water" + }, + { + "@id": "bts:Other" + }, + { + "@id": "bts:Multi" + }, + { + "@id": "bts:Glycerol" + } + ], + "sms:displayName": "Image Immersion Type", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofhead;face;andneck", + "@id": "bts:ImagePyramidal", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Peripheralnervesandautonomicnervoussystemofhead;face;andneck", + "rdfs:comment": "Does data file contain pyramid of images", + "rdfs:label": "ImagePyramidal", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Peripheral nerves and autonomic nervous system of head; face; and neck", + "schema:rangeIncludes": [ + { + "@id": "bts:True" + }, + { + "@id": "bts:False" + } + ], + "sms:displayName": "Image Pyramidal", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Peripheralnervesandautonomicnervoussystemofabdomen", + "@id": "bts:ImageZstack", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Peripheralnervesandautonomicnervoussystemofabdomen", + "rdfs:comment": "Does data file contain a Z-stack of images", + "rdfs:label": "ImageZstack", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Peripheral nerves and autonomic nervous system of abdomen", + "sms:displayName": "Image Z stack", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Reticuloendothelialsystem;NOS", + "@id": "bts:ImageTimeseries", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Reticuloendothelialsystem;NOS", + "rdfs:comment": "Does data file contain a time-series of images", + "rdfs:label": "ImageTimeseries", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Reticuloendothelial system; NOS", + "sms:displayName": "Image Timeseries", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Renalpelvis", + "@id": "bts:ImageFOVIndex", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Renalpelvis", + "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", + "rdfs:label": "ImageFOVIndex", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Renal pelvis", + "sms:displayName": "Image FOV Index", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Rectum;NOS", + "@id": "bts:ImageFOVSizeX", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rectum;NOS", + "rdfs:comment": "Field of view X dimension. Floating point", + "rdfs:label": "ImageFOVSizeX", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Rectum; NOS", + "sms:displayName": "Image FOV Size X", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Rectosigmoidjunction", + "@id": "bts:ImageFOVSizeXUnit", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Rectosigmoidjunction", + "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageFOVSizeXUnit", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Rectosigmoid junction", + "sms:displayName": "Image FOV Size X Unit", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Pyriformsinus", + "@id": "bts:ImageFOVSizeY", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pyriformsinus", + "rdfs:comment": "Field of view Y dimension. Floating point value", + "rdfs:label": "ImageFOVSizeY", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Pyriform sinus", + "sms:displayName": "Image FOV Size Y", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Prostategland", + "@id": "bts:ImageFOVSizeYUnit", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Prostategland", + "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImageFOVSizeYUnit", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Prostate gland", + "sms:displayName": "Image FOV Size Y Unit", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Prepuce", + "@id": "bts:ImageFrameAveraging", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Prepuce", + "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", + "rdfs:label": "ImageFrameAveraging", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Prepuce", + "sms:displayName": "Image Frame Averaging", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Posteriorwalloforopharynx", + "@id": "bts:ImageIdentifier", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriorwalloforopharynx", + "rdfs:comment": "Unique internal image identifier. eg \"Image:0\". (To be extracted from OME-XML)", + "rdfs:label": "ImageIdentifier", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Posterior wall of oropharynx", + "sms:displayName": "Image Identifier", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Posteriorwallofnasopharynx", + "@id": "bts:ImageDimensionOrder", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriorwallofnasopharynx", + "rdfs:comment": "The order in which the individual planes of data are interleaved.", + "rdfs:label": "ImageDimensionOrder", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Posterior wall of nasopharynx", + "sms:displayName": "Image Dimension Order", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofcorpusuteri", + "@id": "bts:ImagePhysicalSizeX", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofcorpusuteri", + "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeX", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of corpus uteri", + "sms:displayName": "Image Physical Size X", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofconnective;subcutaneousandothersofttissues", + "@id": "bts:ImagePhysicalSizeXUnit", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofconnective;subcutaneousandothersofttissues", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeXUnit", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of connective; subcutaneous and other soft tissues", + "sms:displayName": "Image Physical Size X Unit", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofcolon", + "@id": "bts:ImagePhysicalSizeY", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofcolon", + "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeY", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of colon", + "sms:displayName": "Image Physical Size Y", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofcervixuteri", + "@id": "bts:ImagePhysicalSizeYUnit", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofcervixuteri", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeYUnit", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of cervix uteri", + "sms:displayName": "Image Physical Size Y Unit", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofbreast", + "@id": "bts:ImagePhysicalSizeZ", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbreast", + "rdfs:comment": "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", + "rdfs:label": "ImagePhysicalSizeZ", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of breast", + "sms:displayName": "Image Physical Size Z", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofbrain", + "@id": "bts:ImagePhysicalSizeZUnit", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbrain", + "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", + "rdfs:label": "ImagePhysicalSizeZUnit", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of brain", + "sms:displayName": "Image Physical Size Z Unit", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofbladder", + "@id": "bts:ImagePixelsBigEndian", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbladder", + "rdfs:comment": "Boolean (True/False)", + "rdfs:label": "ImagePixelsBigEndian", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of bladder", + "schema:rangeIncludes": [ + { + "@id": "bts:True" + }, + { + "@id": "bts:False" + } + ], + "sms:displayName": "Image Pixels BigEndian", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofbiliarytract", + "@id": "bts:ImagePlaneCount", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbiliarytract", + "rdfs:comment": "Number of Z-planes (not to be confused with downsampled \"pyramid\"). Integer >=1", + "rdfs:label": "ImagePlaneCount", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of biliary tract", + "sms:displayName": "Image Plane Count", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofaccessorysinuses", + "@id": "bts:ImageChannelSize", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofaccessorysinuses", + "rdfs:comment": "Number of channels. Integer >= 1", + "rdfs:label": "ImageChannelSize", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of accessory sinuses", + "sms:displayName": "Image Channel Size", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofrectum;anusandanalcanal", + "@id": "bts:ImageNumberofTimepoints", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofrectum;anusandanalcanal", + "rdfs:comment": "Number of time points. Integer >= 1", + "rdfs:label": "ImageNumberofTimepoints", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of rectum; anus and anal canal", + "sms:displayName": "Image Number of Timepoints", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofperipheralnervesandautonomicnervoussystem", + "@id": "bts:ImageXPixels", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofperipheralnervesandautonomicnervoussystem", + "rdfs:comment": "Size of image: X dimension (in pixels). Integer >= 1", + "rdfs:label": "ImageXPixels", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of peripheral nerves and autonomic nervous system", + "sms:displayName": "Image X Pixels", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofheart;mediastinumandpleura", + "@id": "bts:ImageYPixels", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofheart;mediastinumandpleura", + "rdfs:comment": "Size of image: Y dimension (in pixels). Integer >= 1", + "rdfs:label": "ImageYPixels", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of heart; mediastinum and pleura", + "sms:displayName": "Image Y Pixels", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofeyeandadnexa", + "@id": "bts:ImageZPixels", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofeyeandadnexa", + "rdfs:comment": "Size of image: Z dimension (in pixels). Integer >= 1", + "rdfs:label": "ImageZPixels", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of eye and adnexa", + "sms:displayName": "Image Z Pixels", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofbrainandcentralnervoussystem", + "@id": "bts:ImagePixelType", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbrainandcentralnervoussystem", + "rdfs:comment": "Data type for each pixel value. E.g. \"uint16\"", + "rdfs:label": "ImagePixelType", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of brain and central nervous system", + "sms:displayName": "Image Pixel Type", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilageoflimbs", + "@id": "bts:NanoStringGeoMxDSPLevel1", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbones;jointsandarticularcartilageoflimbs", + "rdfs:comment": "Raw sequencing files from GeoMX experiments", + "rdfs:label": "NanoStringGeoMxDSPLevel1", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Overlapping lesion of bones; joints and articular cartilage of limbs", + "sms:displayName": "NanoString GeoMx DSP Level 1", "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Overlappinglesionofbones;jointsandarticularcartilage", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Overlappinglesionofbones;jointsandarticularcartilage", - "rdfs:subClassOf": [ + "sms:requiresComponent": [ + { + "@id": "bts:FileView" + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotation" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:NanoStringGeoMxDSPLevel1Id" + }, + { + "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + }, + { + "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + }, + { + "@id": "bts:Filename" + }, + { + "@id": "bts:GeoMxDSPAssayType" + }, + { + "@id": "bts:NGSLibraryStrategy" + }, + { + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" + }, + { + "@id": "bts:NGSLibrarySelectionMethod" + }, + { + "@id": "bts:NGSLibraryLayout" + }, + { + "@id": "bts:NGSSequencingPlatform" + }, + { + "@id": "bts:NGSSequencingDesignDescription" + }, + { + "@id": "bts:NGSReadLength" + }, + { + "@id": "bts:NGSRawReads" + }, + { + "@id": "bts:NGSUniqueBases" + }, + { + "@id": "bts:NGSSequencingCoverage" + }, + { + "@id": "bts:NGSLibraryPreparationKitName" + }, + { + "@id": "bts:NGSLibraryPreparationKitVendor" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Overlapping lesion of bones; joints and articular cartilage", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Posteriorwallofhypopharynx", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriorwallofhypopharynx", - "rdfs:subClassOf": [ + "@id": "bts:NGSLibraryPreparationKitVersion" + }, { - "@id": "bts:FileAnatomicSite" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Posterior wall of hypopharynx", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Posteriorwallofbladder", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriorwallofbladder", - "rdfs:subClassOf": [ + "@id": "bts:NGSReadIndicator" + }, { - "@id": "bts:FileAnatomicSite" + "@id": "bts:NGSLibraryPreparationDaysfromIndex" + }, + { + "@id": "bts:NGSSequencingLibraryConstructionDaysfromIndex" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Posterior wall of bladder", - "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Posteriormediastinum", + "@id": "bts:NanoStringGeoMxDSPLevel1Id", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Posteriormediastinum", + "rdfs:comment": "Unique row identifier, used as a primary key for record updates", + "rdfs:label": "NanoStringGeoMxDSPLevel1Id", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Posterior mediastinum", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "NanoStringGeoMxDSPLevel1_id", + "sms:required": "sms:true", + "sms:validationRules": [ + "unique" + ] }, { - "@id": "bts:Postcricoidregion", + "@id": "bts:GeoMxDSPAssayType", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Postcricoidregion", + "rdfs:comment": "The assay type which was used for the GeoMx DSP pipeline.", + "rdfs:label": "GeoMxDSPAssayType", "rdfs:subClassOf": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Postcricoid region", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Pleura;NOS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pleura;NOS", - "rdfs:subClassOf": [ + "schema:rangeIncludes": [ { - "@id": "bts:FileAnatomicSite" + "@id": "bts:RNAnCounter" + }, + { + "@id": "bts:ProteinnCounter" + }, + { + "@id": "bts:ProteinNGS" + }, + { + "@id": "bts:RNANGS" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Pleura; NOS", + "sms:displayName": "GeoMx DSP Assay Type", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles", + "@id": "bts:NGSLibraryStrategy", "@type": "rdfs:Class", - "rdfs:comment": "Contains identifiers for auxiliary files associated with Nanostring GeoMx Spatial Profiling experiments.", - "rdfs:label": "NanoStringGeoMxAuxiliaryFiles", + "rdfs:comment": "The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)", + "rdfs:label": "NGSLibraryStrategy", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -249969,54 +261890,136 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoString GeoMx Auxiliary Files", - "sms:required": "sms:false", - "sms:requiresDependency": [ + "schema:rangeIncludes": [ { - "@id": "bts:Component" + "@id": "bts:AMPLICON" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesId" + "@id": "bts:ATAC-seq" }, { - "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile" + "@id": "bts:Bisulfite-Seq" }, { - "@id": "bts:SynapseIDofGeoMxDSPPKCFile" + "@id": "bts:ChIA-PET" }, { - "@id": "bts:SynapseIDofGeoMxLabWorksheetFile" + "@id": "bts:ChIP-Seq" }, { - "@id": "bts:SynapseIDofGeoMxDSPConfigFile" - } - ], - "sms:validationRules": [] - }, - { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesId", - "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxAuxiliaryFilesId", - "rdfs:subClassOf": [ + "@id": "bts:CLONE" + }, { - "@id": "bts:Thing" + "@id": "bts:CLONEEND" + }, + { + "@id": "bts:CTS" + }, + { + "@id": "bts:Spatial-tx" + }, + { + "@id": "bts:SnATAC-Seq" + }, + { + "@id": "bts:DNase-Hypersensitivity" + }, + { + "@id": "bts:ScMultiome" + }, + { + "@id": "bts:EST" + }, + { + "@id": "bts:FAIRE-seq" + }, + { + "@id": "bts:FINISHING" + }, + { + "@id": "bts:FL-cDNA" + }, + { + "@id": "bts:Hi-C" + }, + { + "@id": "bts:MBD-Seq" + }, + { + "@id": "bts:MeDIP-Seq" + }, + { + "@id": "bts:MiRNA-Seq" + }, + { + "@id": "bts:MNase-Seq" + }, + { + "@id": "bts:MRE-Seq" + }, + { + "@id": "bts:NcRNA-Seq" + }, + { + "@id": "bts:Other" + }, + { + "@id": "bts:POOLCLONE" + }, + { + "@id": "bts:RAD-Seq" + }, + { + "@id": "bts:RIP-Seq" + }, + { + "@id": "bts:RNA-Seq" + }, + { + "@id": "bts:SELEX" + }, + { + "@id": "bts:DNA-Seq" + }, + { + "@id": "bts:SsRNA-seq" + }, + { + "@id": "bts:Synthetic-Long-Read" + }, + { + "@id": "bts:Targeted-Capture" + }, + { + "@id": "bts:TetheredChromatinConformationCapture" + }, + { + "@id": "bts:Tn-Seq" + }, + { + "@id": "bts:WCS" + }, + { + "@id": "bts:WGA" + }, + { + "@id": "bts:WGS" + }, + { + "@id": "bts:WXS" } ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NanoStringGeoMxAuxiliaryFiles_id", + "sms:displayName": "NGS Library Strategy", "sms:required": "sms:true", "sms:validationRules": [ - "unique" + "str" ] }, { - "@id": "bts:SynapseIDofGeoMxDSPROISegmentAnnotationFile", + "@id": "bts:NGSLibrarySourceMaterial", "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID(s) for ROI/AOI/Segmentation annotations in the GeoMx DSP experiment.", - "rdfs:label": "SynapseIDofGeoMxDSPROISegmentAnnotationFile", + "rdfs:comment": "The type of source material being sequenced.", + "rdfs:label": "NGSLibrarySourceMaterial", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250025,18 +262028,37 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synapse ID of GeoMx DSP ROI Segment Annotation File", - "sms:required": "sms:false", + "schema:rangeIncludes": [ + { + "@id": "bts:BulkCells" + }, + { + "@id": "bts:BulkTissue" + }, + { + "@id": "bts:BulkNuclei" + }, + { + "@id": "bts:Single-nuclei" + }, + { + "@id": "bts:Single-cells" + }, + { + "@id": "bts:NotReported" + } + ], + "sms:displayName": "NGS Library Source Material", + "sms:required": "sms:true", "sms:validationRules": [ - "list like", - "regex match syn\\d+" + "str" ] }, { - "@id": "bts:SynapseIDofGeoMxDSPPKCFile", + "@id": "bts:NGSLibrarySourceMolecule", "@type": "rdfs:Class", - "rdfs:comment": "The Synapse ID(s) associated with the PKC mapping file for the assay. Multiple files are listed as comma separated values.", - "rdfs:label": "SynapseIDofGeoMxDSPPKCFile", + "rdfs:comment": "The source of nucleic acids represented in the sequencing library.", + "rdfs:label": "NGSLibrarySourceMolecule", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250045,18 +262067,37 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synapse ID of GeoMx DSP PKC File", + "schema:rangeIncludes": [ + { + "@id": "bts:GenomicDNA" + }, + { + "@id": "bts:Metagenomic" + }, + { + "@id": "bts:Metatranscriptomic" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:Transcriptome" + }, + { + "@id": "bts:ViralRNA" + } + ], + "sms:displayName": "NGS Library Source Molecule", "sms:required": "sms:false", "sms:validationRules": [ - "list like", - "regex match syn\\d+" + "str" ] }, { - "@id": "bts:SynapseIDofGeoMxLabWorksheetFile", + "@id": "bts:NGSLibrarySelectionMethod", "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID(s) of Lab Worksheet Files output from the GeoMx DSP workflow. Multiple files are listed as comma separated values.", - "rdfs:label": "SynapseIDofGeoMxLabWorksheetFile", + "rdfs:comment": "How nucleic acid molecules are isolated.", + "rdfs:label": "NGSLibrarySelectionMethod", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250065,18 +262106,133 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synapse ID of GeoMx Lab Worksheet File", + "schema:rangeIncludes": [ + { + "@id": "bts:5-methylcytidineantibody" + }, + { + "@id": "bts:CAGE" + }, + { + "@id": "bts:RRNADepletion" + }, + { + "@id": "bts:CDNA" + }, + { + "@id": "bts:CDNAoligoDT" + }, + { + "@id": "bts:CDNArandompriming" + }, + { + "@id": "bts:CF-H" + }, + { + "@id": "bts:CF-M" + }, + { + "@id": "bts:CF-S" + }, + { + "@id": "bts:CF-T" + }, + { + "@id": "bts:Poly-TEnrichment" + }, + { + "@id": "bts:ChIP" + }, + { + "@id": "bts:DNAse" + }, + { + "@id": "bts:HMPR" + }, + { + "@id": "bts:HybridSelection" + }, + { + "@id": "bts:Notapplicable" + }, + { + "@id": "bts:InverserRNA" + }, + { + "@id": "bts:MBD2proteinmethyl-CpGbindingdomain" + }, + { + "@id": "bts:MiRNASizeFractionation" + }, + { + "@id": "bts:MDA" + }, + { + "@id": "bts:MF" + }, + { + "@id": "bts:MNase" + }, + { + "@id": "bts:MSLL" + }, + { + "@id": "bts:Oligo-dT" + }, + { + "@id": "bts:Other" + }, + { + "@id": "bts:Padlockprobescapturemethod" + }, + { + "@id": "bts:PCR" + }, + { + "@id": "bts:PolyA" + }, + { + "@id": "bts:RACE" + }, + { + "@id": "bts:Random" + }, + { + "@id": "bts:RandomPCR" + }, + { + "@id": "bts:ReducedRepresentation" + }, + { + "@id": "bts:Repeatfractionation" + }, + { + "@id": "bts:RestrictionDigest" + }, + { + "@id": "bts:RT-PCR" + }, + { + "@id": "bts:Sizefractionation" + }, + { + "@id": "bts:AffinityEnrichment" + }, + { + "@id": "bts:Unspecified" + } + ], + "sms:displayName": "NGS Library Selection Method", "sms:required": "sms:false", "sms:validationRules": [ - "list like", - "regex match syn\\d+" + "str" ] }, { - "@id": "bts:SynapseIDofGeoMxDSPConfigFile", + "@id": "bts:NGSLibraryLayout", "@type": "rdfs:Class", - "rdfs:comment": "Synapse ID of config.ini file generated by the GeoMx DSP workflow.", - "rdfs:label": "SynapseIDofGeoMxDSPConfigFile", + "rdfs:comment": "Text description of the library layout, one of Paired-end or Single.", + "rdfs:label": "NGSLibraryLayout", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250085,18 +262241,25 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Synapse ID of GeoMx DSP Config File", - "sms:required": "sms:false", + "schema:rangeIncludes": [ + { + "@id": "bts:Paired-end" + }, + { + "@id": "bts:Single-indexed" + } + ], + "sms:displayName": "NGS Library Layout", + "sms:required": "sms:true", "sms:validationRules": [ - "list like", - "regex match syn\\d+" + "str" ] }, { - "@id": "bts:NanoStringGeoMxDSPImaging", + "@id": "bts:NGSSequencingPlatform", "@type": "rdfs:Class", - "rdfs:comment": "Images acquired by the GeoMx instrument", - "rdfs:label": "NanoStringGeoMxDSPImaging", + "rdfs:comment": "A platform is an object aggregate that is the set of instruments and software needed to perform a process [OBI_0000050]. Specific model of the sequencing instrument.", + "rdfs:label": "NGSSequencingPlatform", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250105,52 +262268,220 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoString GeoMx DSP Imaging", - "sms:required": "sms:false", - "sms:requiresComponent": [ + "schema:rangeIncludes": [ { - "@id": "bts:FileView" + "@id": "bts:454GS" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFiles" - } - ], - "sms:requiresDependency": [ + "@id": "bts:454GS20" + }, { - "@id": "bts:Component" + "@id": "bts:454GSFLX" }, { - "@id": "bts:NanoStringGeoMxDSPImagingId" + "@id": "bts:454GSFLXTitanium" }, { - "@id": "bts:Filename" + "@id": "bts:454GSFLX+" }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key" + "@id": "bts:454GSJunior" }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Key" + "@id": "bts:AB310GeneticAnalyzer" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:AB3130GeneticAnalyzer" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:AB3130xLGeneticAnalyzer" }, { - "@id": "bts:GeoMxImagingChannelNames" + "@id": "bts:AB3500GeneticAnalyzer" }, { - "@id": "bts:GeoMxImagingAOICoordinates" + "@id": "bts:AB3500xLGeneticAnalyzer" + }, + { + "@id": "bts:AB3730GeneticAnalyzer" + }, + { + "@id": "bts:AB3730xLGeneticAnalyzer" + }, + { + "@id": "bts:AB5500GeneticAnalyzer" + }, + { + "@id": "bts:AB5500x-WlGeneticAnalyzer" + }, + { + "@id": "bts:AB5500xlGeneticAnalyzer" + }, + { + "@id": "bts:ABSOLiD2" + }, + { + "@id": "bts:ABSOLiD3" + }, + { + "@id": "bts:ABSOLiD3PlusSystem" + }, + { + "@id": "bts:ABSOLiD4" + }, + { + "@id": "bts:ABSOLiD4hqSystem" + }, + { + "@id": "bts:ABSOLiDPISystem" + }, + { + "@id": "bts:ABSOLiDSystem" + }, + { + "@id": "bts:BGISEQ-500" + }, + { + "@id": "bts:CompleteGenomics" + }, + { + "@id": "bts:DNBSEQ-G400" + }, + { + "@id": "bts:DNBSEQ-G50" + }, + { + "@id": "bts:DNBSEQ-T7" + }, + { + "@id": "bts:GridION" + }, + { + "@id": "bts:HelicosHeliScope" + }, + { + "@id": "bts:IlluminaGenomeAnalyzer" + }, + { + "@id": "bts:IlluminaGenomeAnalyzerII" + }, + { + "@id": "bts:IlluminaGenomeAnalyzerIIx" + }, + { + "@id": "bts:IlluminaHiScanSQ" + }, + { + "@id": "bts:IlluminaHiSeq1000" + }, + { + "@id": "bts:IlluminaHiSeq1500" + }, + { + "@id": "bts:IlluminaHiSeq2000" + }, + { + "@id": "bts:IlluminaHiSeq2500" + }, + { + "@id": "bts:IlluminaHiSeq3000" + }, + { + "@id": "bts:IlluminaHiSeq4000" + }, + { + "@id": "bts:IlluminaHiSeqXFive" + }, + { + "@id": "bts:IlluminaHiSeqXTen" + }, + { + "@id": "bts:IlluminaiSeq100" + }, + { + "@id": "bts:IlluminaMiniSeq" + }, + { + "@id": "bts:IlluminaMiSeq" + }, + { + "@id": "bts:IlluminaNextSeq" + }, + { + "@id": "bts:IlluminaNextSeq2500" + }, + { + "@id": "bts:IlluminaNextSeq500" + }, + { + "@id": "bts:IlluminaNextSeq550" + }, + { + "@id": "bts:IlluminaNovaSeq" + }, + { + "@id": "bts:IlluminaNovaSeq6000" + }, + { + "@id": "bts:IlluminaNovaSeqXPlus" + }, + { + "@id": "bts:IonTorrentPGM" + }, + { + "@id": "bts:IonTorrentProton" + }, + { + "@id": "bts:IonTorrentS5" + }, + { + "@id": "bts:IonTorrentS5XL" + }, + { + "@id": "bts:MGISEQ-2000RS" + }, + { + "@id": "bts:MinION" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:Other" + }, + { + "@id": "bts:PacBioRS" + }, + { + "@id": "bts:PacBioRSII" + }, + { + "@id": "bts:PacBioSequel" + }, + { + "@id": "bts:PacBioSequelII" + }, + { + "@id": "bts:PromethION" + }, + { + "@id": "bts:UltimaGenomicsUG100" + }, + { + "@id": "bts:Unknown" } ], - "sms:validationRules": [] + "sms:displayName": "NGS Sequencing Platform", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:NanoStringGeoMxDSPImagingId", + "@id": "bts:NGSSequencingDesignDescription", "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPImagingId", + "rdfs:comment": "Free-form description of the methods used to create the sequencing library; a brief 'materials and methods' section.", + "rdfs:label": "NGSSequencingDesignDescription", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250159,93 +262490,93 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxDSPImaging_id", + "sms:displayName": "NGS Sequencing Design Description", "sms:required": "sms:true", "sms:validationRules": [ - "unique" + "str" ] }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Key", + "@id": "bts:NGSReadLength", "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel1_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel1Key", + "rdfs:comment": "The average length of the sequencing reads. Can be integer, null", + "rdfs:label": "NGSReadLength", "rdfs:subClassOf": [ { - "@id": "bts:Geomx" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxDSPLevel1 Key", - "sms:required": "sms:false", + "sms:displayName": "NGS Read Length", + "sms:required": "sms:true", "sms:validationRules": [ - "list like" + "num" ] }, { - "@id": "bts:NanoStringGeoMxDSPLevel2Key", + "@id": "bts:NGSRawReads", "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxDSPLevel2_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxDSPLevel2Key", + "rdfs:comment": "Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file.", + "rdfs:label": "NGSRawReads", "rdfs:subClassOf": [ { - "@id": "bts:Geomx" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxDSPLevel2 Key", + "sms:displayName": "NGS Raw Reads", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "num" ] }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey", + "@id": "bts:NGSUniqueBases", "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMxAuxiliaryFiles_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMxAuxiliaryFilesKey", + "rdfs:comment": "Count of unique basecalls present in the data.", + "rdfs:label": "NGSUniqueBases", "rdfs:subClassOf": [ { - "@id": "bts:Geomx" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxAuxiliaryFiles Key", + "sms:displayName": "NGS Unique Bases", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "num" ] }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey", + "@id": "bts:NGSSequencingCoverage", "@type": "rdfs:Class", - "rdfs:comment": "Unique NanoStringGeoMXROISegmentAnnotation_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "NanoStringGeoMXROISegmentAnnotationKey", + "rdfs:comment": "Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length)", + "rdfs:label": "NGSSequencingCoverage", "rdfs:subClassOf": [ { - "@id": "bts:Geomx" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMXROISegmentAnnotation Key", + "sms:displayName": "NGS Sequencing Coverage", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "num" ] }, { - "@id": "bts:GeoMxImagingChannelNames", + "@id": "bts:NGSLibraryPreparationKitName", "@type": "rdfs:Class", - "rdfs:comment": "Name(s) of imaging channel(s) associated with the image; multiple values should be provided as a comma-separated list.", - "rdfs:label": "GeoMxImagingChannelNames", + "rdfs:comment": "Name of Library Preparation Kit. String", + "rdfs:label": "NGSLibraryPreparationKitName", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250254,17 +262585,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "GeoMx Imaging Channel Names", + "sms:displayName": "NGS Library Preparation Kit Name", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "str" ] }, { - "@id": "bts:GeoMxImagingAOICoordinates", + "@id": "bts:NGSLibraryPreparationKitVendor", "@type": "rdfs:Class", - "rdfs:comment": "Synapse Id(s) of tabular file(s) containing coordinate points for AOIs found in the image; multiple values should be provided as a comma-separated list.", - "rdfs:label": "GeoMxImagingAOICoordinates", + "rdfs:comment": "Vendor of Library Preparation Kit. String", + "rdfs:label": "NGSLibraryPreparationKitVendor", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250273,17 +262604,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "GeoMx Imaging AOI Coordinates", + "sms:displayName": "NGS Library Preparation Kit Vendor", "sms:required": "sms:false", "sms:validationRules": [ - "list like" + "str" ] }, { - "@id": "bts:NanoStringGeoMxDSPLevel1", + "@id": "bts:NGSLibraryPreparationKitVersion", "@type": "rdfs:Class", - "rdfs:comment": "Raw sequencing files from GeoMX experiments", - "rdfs:label": "NanoStringGeoMxDSPLevel1", + "rdfs:comment": "Version of Library Preparation Kit. String", + "rdfs:label": "NGSLibraryPreparationKitVersion", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250292,43 +262623,53 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoString GeoMx DSP Level 1", + "sms:displayName": "NGS Library Preparation Kit Version", "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:FileView" - }, + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:NGSReadIndicator", + "@type": "rdfs:Class", + "rdfs:comment": "Indicate if this is Read 1 (R1), Read 2 (R2), Index Reads (I1), or Other", + "rdfs:label": "NGSReadIndicator", + "rdfs:subClassOf": [ { - "@id": "bts:NanoStringGeoMXROISegmentAnnotation" + "@id": "bts:Thing" } ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ { - "@id": "bts:NanoStringGeoMxDSPLevel1Id" + "@id": "bts:R1" }, { - "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + "@id": "bts:R2" }, { - "@id": "bts:NanoStringGeoMXROISegmentAnnotationKey" + "@id": "bts:R1&R2" }, { - "@id": "bts:Filename" + "@id": "bts:I1" }, { - "@id": "bts:GeoMxDSPAssayType" + "@id": "bts:Other" } ], - "sms:validationRules": [] + "sms:displayName": "NGS Read Indicator", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] }, { - "@id": "bts:NanoStringGeoMxDSPLevel1Id", + "@id": "bts:NGSLibraryPreparationDaysfromIndex", "@type": "rdfs:Class", - "rdfs:comment": "Unique row identifier, used as a primary key for record updates", - "rdfs:label": "NanoStringGeoMxDSPLevel1Id", + "rdfs:comment": "Number of days between sample for assay was received in lab and the libraries were prepared for sequencing [number]. If not applicable please enter 'Not Applicable'", + "rdfs:label": "NGSLibraryPreparationDaysfromIndex", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250337,17 +262678,17 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NanoStringGeoMxDSPLevel1_id", - "sms:required": "sms:true", + "sms:displayName": "NGS Library Preparation Days from Index", + "sms:required": "sms:false", "sms:validationRules": [ - "unique" + "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { - "@id": "bts:GeoMxDSPAssayType", + "@id": "bts:NGSSequencingLibraryConstructionDaysfromIndex", "@type": "rdfs:Class", - "rdfs:comment": "The assay type which was used for the GeoMx DSP pipeline.", - "rdfs:label": "GeoMxDSPAssayType", + "rdfs:comment": "Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable'", + "rdfs:label": "NGSSequencingLibraryConstructionDaysfromIndex", "rdfs:subClassOf": [ { "@id": "bts:Thing" @@ -250356,23 +262697,11 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:RNAnCounter" - }, - { - "@id": "bts:ProteinnCounter" - }, - { - "@id": "bts:ProteinNGS" - }, - { - "@id": "bts:RNANGS" - } - ], - "sms:displayName": "GeoMx DSP Assay Type", - "sms:required": "sms:false", - "sms:validationRules": [] + "sms:displayName": "NGS Sequencing Library Construction Days from Index", + "sms:required": "sms:true", + "sms:validationRules": [ + "regex match \\d+$|Not\\sApplicable$|unknown$" + ] }, { "@id": "bts:NanoStringGeoMXROISegmentAnnotation", @@ -250462,19 +262791,19 @@ "@id": "bts:GeoMxSlidename" }, { - "@id": "bts:NGSRawreads" + "@id": "bts:NGSRawReads" }, { - "@id": "bts:NGSStitchedreads" + "@id": "bts:NGSStitchedReads" }, { - "@id": "bts:NGSAlignedreads" + "@id": "bts:NGSAlignedReads" }, { - "@id": "bts:NGSDeduplicatedreads" + "@id": "bts:NGSDeduplicatedReads" }, { - "@id": "bts:NGSTrimmedreads" + "@id": "bts:NGSTrimmedReads" }, { "@id": "bts:NGSSequencingCoverage" @@ -250609,6 +262938,60 @@ }, { "@id": "bts:GeoMxDSPAssayType" + }, + { + "@id": "bts:NGSLibraryStrategy" + }, + { + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" + }, + { + "@id": "bts:NGSLibrarySelectionMethod" + }, + { + "@id": "bts:NGSLibraryLayout" + }, + { + "@id": "bts:NGSSequencingPlatform" + }, + { + "@id": "bts:NGSSequencingDesignDescription" + }, + { + "@id": "bts:NGSRawReads" + }, + { + "@id": "bts:NGSStitchedReads" + }, + { + "@id": "bts:NGSAlignedReads" + }, + { + "@id": "bts:NGSDeduplicatedReads" + }, + { + "@id": "bts:NGSTrimmedReads" + }, + { + "@id": "bts:NGSMapQ30" + }, + { + "@id": "bts:NGSUniqueBases" + }, + { + "@id": "bts:NGSReadLength" + }, + { + "@id": "bts:NGSSequencingCoverage" + }, + { + "@id": "bts:GenomicReference" + }, + { + "@id": "bts:SoftwareandVersion" } ], "sms:validationRules": [] @@ -250632,6 +263015,139 @@ "unique" ] }, + { + "@id": "bts:NGSStitchedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads", + "rdfs:label": "NGSStitchedReads", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Stitched Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSAlignedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.", + "rdfs:label": "NGSAlignedReads", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Aligned Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSDeduplicatedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Is the replacement of blocks of duplicate data with a Virtual Index Pointer linking the new sub-block to the existing block of data in a duplicate repository. This is used to reduce the amount of space need to store the data.", + "rdfs:label": "NGSDeduplicatedReads", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Deduplicated Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSTrimmedReads", + "@type": "rdfs:Class", + "rdfs:comment": "Number of the reads remaining after trimming has been applied.", + "rdfs:label": "NGSTrimmedReads", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Trimmed Reads", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSMapQ30", + "@type": "rdfs:Class", + "rdfs:comment": "Number of reads with Quality >= 30.", + "rdfs:label": "NGSMapQ30", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS MapQ30", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:GenomicReference", + "@type": "rdfs:Class", + "rdfs:comment": "Exact version of the human genome reference used in the alignment of reads (e.g. GCF_000001405.39)", + "rdfs:label": "GenomicReference", + "rdfs:subClassOf": [ + { + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genomic Reference", + "sms:required": "sms:true", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:SoftwareandVersion", + "@type": "rdfs:Class", + "rdfs:comment": "Name of software used to generate the information contained in the file. String", + "rdfs:label": "SoftwareandVersion", + "rdfs:subClassOf": [ + { + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Software and Version", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, { "@id": "bts:NanoStringGeoMxDSPLevel3", "@type": "rdfs:Class", @@ -250673,6 +263189,27 @@ }, { "@id": "bts:NanoStringGeoMxAuxiliaryFilesKey" + }, + { + "@id": "bts:NGSUniqueProbeCount" + }, + { + "@id": "bts:NGSUniqueTargetCount" + }, + { + "@id": "bts:NGSMatrixType" + }, + { + "@id": "bts:SoftwareandVersion" + }, + { + "@id": "bts:WorkflowType" + }, + { + "@id": "bts:WorkflowParameterDescription" + }, + { + "@id": "bts:WorkflowLink" } ], "sms:validationRules": [] @@ -250696,6 +263233,132 @@ "unique" ] }, + { + "@id": "bts:NGSUniqueProbeCount", + "@type": "rdfs:Class", + "rdfs:comment": "Total number of unique probes reported.", + "rdfs:label": "NGSUniqueProbeCount", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Unique Probe Count", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSUniqueTargetCount", + "@type": "rdfs:Class", + "rdfs:comment": "Total number of unique genes reported.", + "rdfs:label": "NGSUniqueTargetCount", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NGS Unique Target Count", + "sms:required": "sms:false", + "sms:validationRules": [ + "num" + ] + }, + { + "@id": "bts:NGSMatrixType", + "@type": "rdfs:Class", + "rdfs:comment": "Type of count data stored in matrix.", + "rdfs:label": "NGSMatrixType", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:RawCounts" + }, + { + "@id": "bts:NormalizedCounts" + }, + { + "@id": "bts:ScaledCounts" + }, + { + "@id": "bts:BatchCorrectedCounts" + } + ], + "sms:displayName": "NGS Matrix Type", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:WorkflowType", + "@type": "rdfs:Class", + "rdfs:comment": "Type of computational workflow used to generate the file.", + "rdfs:label": "WorkflowType", + "rdfs:subClassOf": [ + { + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Type", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:WorkflowParameterDescription", + "@type": "rdfs:Class", + "rdfs:comment": "Link or text description of flags or options provided to the workflow used to generate the file.", + "rdfs:label": "WorkflowParameterDescription", + "rdfs:subClassOf": [ + { + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Parameter Description", + "sms:required": "sms:false", + "sms:validationRules": [ + "str" + ] + }, + { + "@id": "bts:WorkflowLink", + "@type": "rdfs:Class", + "rdfs:comment": "Link to documentation or webpage associated with the computational workflow used to generate the file.", + "rdfs:label": "WorkflowLink", + "rdfs:subClassOf": [ + { + "@id": "bts:Shared" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Workflow Link", + "sms:required": "sms:false", + "sms:validationRules": [ + "url" + ] + }, { "@id": "bts:NanoStringGeoMXROISegmentAnnotationId", "@type": "rdfs:Class", @@ -250775,7 +263438,7 @@ { "@id": "bts:GeoMxTags", "@type": "rdfs:Class", - "rdfs:comment": "TBD", + "rdfs:comment": "The basename(s) or unique identifier(s) for FASTQ, RCC, or DCC file(s) associated with this ROI.", "rdfs:label": "GeoMxTags", "rdfs:subClassOf": [ { @@ -250787,7 +263450,9 @@ }, "sms:displayName": "GeoMx Tags", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { "@id": "bts:GeoMxROIXCoordinate", @@ -251039,7 +263704,7 @@ { "@id": "bts:GeoMxTissueStain", "@type": "rdfs:Class", - "rdfs:comment": "TBD", + "rdfs:comment": "Text description of the stain, fluorescent reporter, or channel used to select the boundaries of the ROI.", "rdfs:label": "GeoMxTissueStain", "rdfs:subClassOf": [ { @@ -251051,7 +263716,9 @@ }, "sms:displayName": "GeoMx Tissue Stain", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "str" + ] }, { "@id": "bts:GeoMxSlidename", @@ -251072,129 +263739,6 @@ "str" ] }, - { - "@id": "bts:NGSRawreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSRawreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Raw reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSStitchedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSStitchedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Stitched reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSAlignedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSAlignedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Aligned reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSDeduplicatedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSDeduplicatedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Deduplicated reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSTrimmedreads", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NGSTrimmedreads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Trimmed reads", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NGSSequencingCoverage", - "@type": "rdfs:Class", - "rdfs:comment": "Depth of coverage on assembly used. Found by (Unique Aligned Basecalls)/(Reference Length)", - "rdfs:label": "NGSSequencingCoverage", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Sequencing Coverage", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSMapQ30", - "@type": "rdfs:Class", - "rdfs:comment": "Number of reads with Quality >= 30.", - "rdfs:label": "NGSMapQ30", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS MapQ30", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, { "@id": "bts:GeoMxNegativecountmean", "@type": "rdfs:Class", @@ -251628,6 +264172,9 @@ "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ + { + "@id": "bts:AlbertEinsteinCollegeofMedicine" + }, { "@id": "bts:ArizonaStateUniversity" }, @@ -251640,6 +264187,9 @@ { "@id": "bts:BaylorCollegeOfMedicine" }, + { + "@id": "bts:BeckmanResearchInstituteofCityofHope" + }, { "@id": "bts:BethIsraelDeaconessHospital" }, @@ -251661,6 +264211,9 @@ { "@id": "bts:CityOfHope" }, + { + "@id": "bts:ClemsonUniversity" + }, { "@id": "bts:ClevelandClinic" }, @@ -251748,6 +264301,9 @@ { "@id": "bts:PacificNorthwestNationalLaboratory" }, + { + "@id": "bts:PurdueUniversity" + }, { "@id": "bts:RockefellerUniversity" }, @@ -251775,6 +264331,9 @@ { "@id": "bts:UniversityofArizona" }, + { + "@id": "bts:UniversityofArkansasatFayetteville" + }, { "@id": "bts:UniversityofCalifornia;Berkeley" }, @@ -251901,6 +264460,9 @@ "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ + { + "@id": "bts:AECM" + }, { "@id": "bts:ASU" }, @@ -251916,6 +264478,9 @@ { "@id": "bts:BMC" }, + { + "@id": "bts:BRI" + }, { "@id": "bts:BU" }, @@ -251937,6 +264502,9 @@ { "@id": "bts:Caltech" }, + { + "@id": "bts:Clemson" + }, { "@id": "bts:ClevelandClinic" }, @@ -252024,6 +264592,9 @@ { "@id": "bts:Pitt" }, + { + "@id": "bts:Purdue" + }, { "@id": "bts:RockefellerUniversity" }, @@ -252048,6 +264619,9 @@ { "@id": "bts:UA" }, + { + "@id": "bts:UARK" + }, { "@id": "bts:UAB" }, @@ -252250,6 +264824,25 @@ "date" ] }, + { + "@id": "bts:GrantEndDate", + "@type": "rdfs:Class", + "rdfs:comment": "The end date of the grant YYYY-MM-DD format", + "rdfs:label": "GrantEndDate", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Grant End Date", + "sms:required": "sms:true", + "sms:validationRules": [ + "date" + ] + }, { "@id": "bts:NIHRePORTERLink", "@type": "rdfs:Class", @@ -252345,6 +264938,23 @@ "url" ] }, + { + "@id": "bts:AlbertEinsteinCollegeofMedicine", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AlbertEinsteinCollegeofMedicine", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Albert Einstein College of Medicine", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:ArizonaStateUniversity", "@type": "rdfs:Class", @@ -252413,6 +265023,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:BeckmanResearchInstituteofCityofHope", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BeckmanResearchInstituteofCityofHope", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Beckman Research Institute of City of Hope", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:BethIsraelDeaconessHospital", "@type": "rdfs:Class", @@ -252532,6 +265159,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:ClemsonUniversity", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ClemsonUniversity", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Clemson University", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:ClevelandClinic", "@type": "rdfs:Class", @@ -253037,6 +265681,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:PurdueUniversity", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PurdueUniversity", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Purdue University", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:RockefellerUniversity", "@type": "rdfs:Class", @@ -253202,6 +265863,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:UniversityofArkansasatFayetteville", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "UniversityofArkansasatFayetteville", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "University of Arkansas at Fayetteville", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:UniversityofCalifornia;Berkeley", "@type": "rdfs:Class", @@ -253807,10 +266485,10 @@ "sms:validationRules": [] }, { - "@id": "bts:ASU", + "@id": "bts:AECM", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "ASU", + "rdfs:label": "AECM", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -253819,15 +266497,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "ASU", + "sms:displayName": "AECM", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:AU", + "@id": "bts:ASU", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AU", + "rdfs:label": "ASU", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -253836,7 +266514,7 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "AU", + "sms:displayName": "ASU", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -253891,6 +266569,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:BRI", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BRI", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BRI", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:BU", "@type": "rdfs:Class", @@ -254010,6 +266705,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:Clemson", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Clemson", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Clemson", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Columbia", "@type": "rdfs:Class", @@ -254334,10 +267046,10 @@ "sms:validationRules": [] }, { - "@id": "bts:NU", + "@id": "bts:NYU", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NU", + "rdfs:label": "NYU", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -254346,15 +267058,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NU", + "sms:displayName": "NYU", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NYU", + "@id": "bts:OHSU", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NYU", + "rdfs:label": "OHSU", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -254363,15 +267075,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "NYU", + "sms:displayName": "OHSU", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:OHSU", + "@id": "bts:PNNL", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "OHSU", + "rdfs:label": "PNNL", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -254380,15 +267092,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "OHSU", + "sms:displayName": "PNNL", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:PNNL", + "@id": "bts:Pitt", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "PNNL", + "rdfs:label": "Pitt", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -254397,15 +267109,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "PNNL", + "sms:displayName": "Pitt", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Pitt", + "@id": "bts:Purdue", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Pitt", + "rdfs:label": "Purdue", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -254414,7 +267126,7 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Pitt", + "sms:displayName": "Purdue", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -254521,10 +267233,10 @@ "sms:validationRules": [] }, { - "@id": "bts:UA", + "@id": "bts:UARK", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "UA", + "rdfs:label": "UARK", "rdfs:subClassOf": [ { "@id": "bts:GrantInstitutionAlias" @@ -254533,7 +267245,7 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "UA", + "sms:displayName": "UARK", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -257444,171 +270156,6 @@ "sms:required": "sms:true", "sms:validationRules": [] }, - { - "@id": "bts:ImageAssayType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of imaging assay", - "rdfs:label": "ImageAssayType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:CODEX" - }, - { - "@id": "bts:CyCIF" - }, - { - "@id": "bts:ExSeq" - }, - { - "@id": "bts:GeoMX-DSP" - }, - { - "@id": "bts:H&E" - }, - { - "@id": "bts:IHC" - }, - { - "@id": "bts:IMC" - }, - { - "@id": "bts:MERFISH" - }, - { - "@id": "bts:MIBI" - }, - { - "@id": "bts:MIHC" - }, - { - "@id": "bts:MxIF" - }, - { - "@id": "bts:NotApplicable" - }, - { - "@id": "bts:SABER" - }, - { - "@id": "bts:T-CyCIF" - } - ], - "sms:displayName": "Image Assay Type", - "sms:required": "sms:true", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageProtocolLink", - "@type": "rdfs:Class", - "rdfs:comment": "Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.", - "rdfs:label": "ImageProtocolLink", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Protocol Link", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePlatformModel", - "@type": "rdfs:Class", - "rdfs:comment": "The specific model of the instrument used to carry out an imaging experiment.", - "rdfs:label": "ImagePlatformModel", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Platform Model", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePlatformManufacturer", - "@type": "rdfs:Class", - "rdfs:comment": "Producer of the imaging equipment that was used to generate the digital image", - "rdfs:label": "ImagePlatformManufacturer", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Platform Manufacturer", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageSoftware", - "@type": "rdfs:Class", - "rdfs:comment": "The name of the software package that was used to capture, generate, and process the image.", - "rdfs:label": "ImageSoftware", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Software", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagingChannelKey", - "@type": "rdfs:Class", - "rdfs:comment": "Unique ImagingChannel_id foreign key(s) that link metadata entries as part of the same Dataset. Please provide multiple values as a comma-separate list.", - "rdfs:label": "ImagingChannelKey", - "rdfs:subClassOf": [ - { - "@id": "bts:Imaging" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "ImagingChannel Key", - "sms:required": "sms:true", - "sms:validationRules": [ - "list like" - ] - }, - { - "@id": "bts:CODEX", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CODEX", - "rdfs:subClassOf": [ - { - "@id": "bts:ImageAssayType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "CODEX", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:CyCIF", "@type": "rdfs:Class", @@ -257996,586 +270543,6 @@ "list like" ] }, - { - "@id": "bts:ImageObjective", - "@type": "rdfs:Class", - "rdfs:comment": "Objective lens identifier", - "rdfs:label": "ImageObjective", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Objective", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageNominalMagnification", - "@type": "rdfs:Class", - "rdfs:comment": "The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units)", - "rdfs:label": "ImageNominalMagnification", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Nominal Magnification", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageLenseAperture", - "@type": "rdfs:Class", - "rdfs:comment": "The numerical aperture of the lens. Floating point value > 0.", - "rdfs:label": "ImageLenseAperture", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Lense Aperture", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageWorkingDistance", - "@type": "rdfs:Class", - "rdfs:comment": "The working distance of the lens, expressed as a floating point number. Floating point > 0.", - "rdfs:label": "ImageWorkingDistance", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Working Distance", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageWorkingDistanceUnit", - "@type": "rdfs:Class", - "rdfs:comment": "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageWorkingDistanceUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Cm" - }, - { - "@id": "bts:Mm" - }, - { - "@id": "bts:Μm" - }, - { - "@id": "bts:Nm" - }, - { - "@id": "bts:Γ…" - } - ], - "sms:displayName": "Image Working Distance Unit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageImmersionType", - "@type": "rdfs:Class", - "rdfs:comment": "Immersion medium", - "rdfs:label": "ImageImmersionType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Air" - }, - { - "@id": "bts:Oil" - }, - { - "@id": "bts:Water" - }, - { - "@id": "bts:Other" - }, - { - "@id": "bts:Multi" - }, - { - "@id": "bts:Glycerol" - } - ], - "sms:displayName": "Image Immersion Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePyramidal", - "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain pyramid of images", - "rdfs:label": "ImagePyramidal", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:True" - }, - { - "@id": "bts:False" - } - ], - "sms:displayName": "Image Pyramidal", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageZstack", - "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a Z-stack of images", - "rdfs:label": "ImageZstack", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Z stack", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageTimeseries", - "@type": "rdfs:Class", - "rdfs:comment": "Does data file contain a time-series of images", - "rdfs:label": "ImageTimeseries", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Timeseries", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageFOVIndex", - "@type": "rdfs:Class", - "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", - "rdfs:label": "ImageFOVIndex", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image FOV Index", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageFOVSizeX", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension. Floating point", - "rdfs:label": "ImageFOVSizeX", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image FOV Size X", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageFOVSizeXUnit", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageFOVSizeXUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image FOV Size X Unit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageFOVSizeY", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension. Floating point value", - "rdfs:label": "ImageFOVSizeY", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image FOV Size Y", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageFOVSizeYUnit", - "@type": "rdfs:Class", - "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImageFOVSizeYUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image FOV Size Y Unit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageFrameAveraging", - "@type": "rdfs:Class", - "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", - "rdfs:label": "ImageFrameAveraging", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Frame Averaging", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageIdentifier", - "@type": "rdfs:Class", - "rdfs:comment": "Unique internal image identifier. eg \"Image:0\". (To be extracted from OME-XML)", - "rdfs:label": "ImageIdentifier", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Identifier", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageDimensionOrder", - "@type": "rdfs:Class", - "rdfs:comment": "The order in which the individual planes of data are interleaved.", - "rdfs:label": "ImageDimensionOrder", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Dimension Order", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePhysicalSizeX", - "@type": "rdfs:Class", - "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeX", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Physical Size X", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePhysicalSizeXUnit", - "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeXUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Physical Size X Unit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePhysicalSizeY", - "@type": "rdfs:Class", - "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeY", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Physical Size Y", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePhysicalSizeYUnit", - "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeYUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Physical Size Y Unit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePhysicalSizeZ", - "@type": "rdfs:Class", - "rdfs:comment": "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", - "rdfs:label": "ImagePhysicalSizeZ", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Physical Size Z", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePhysicalSizeZUnit", - "@type": "rdfs:Class", - "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "rdfs:label": "ImagePhysicalSizeZUnit", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Physical Size Z Unit", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePixelsBigEndian", - "@type": "rdfs:Class", - "rdfs:comment": "Boolean (True/False)", - "rdfs:label": "ImagePixelsBigEndian", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:True" - }, - { - "@id": "bts:False" - } - ], - "sms:displayName": "Image Pixels BigEndian", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePlaneCount", - "@type": "rdfs:Class", - "rdfs:comment": "Number of Z-planes (not to be confused with downsampled \"pyramid\"). Integer >=1", - "rdfs:label": "ImagePlaneCount", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Plane Count", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageChannelSize", - "@type": "rdfs:Class", - "rdfs:comment": "Number of channels. Integer >= 1", - "rdfs:label": "ImageChannelSize", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Channel Size", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageNumberofTimepoints", - "@type": "rdfs:Class", - "rdfs:comment": "Number of time points. Integer >= 1", - "rdfs:label": "ImageNumberofTimepoints", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Number of Timepoints", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageXPixels", - "@type": "rdfs:Class", - "rdfs:comment": "Size of image: X dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageXPixels", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image X Pixels", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageYPixels", - "@type": "rdfs:Class", - "rdfs:comment": "Size of image: Y dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageYPixels", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Y Pixels", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImageZPixels", - "@type": "rdfs:Class", - "rdfs:comment": "Size of image: Z dimension (in pixels). Integer >= 1", - "rdfs:label": "ImageZPixels", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Z Pixels", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ImagePixelType", - "@type": "rdfs:Class", - "rdfs:comment": "Data type for each pixel value. E.g. \"uint16\"", - "rdfs:label": "ImagePixelType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Image Pixel Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Cm", "@type": "rdfs:Class", @@ -259079,25 +271046,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:SoftwareandVersion", - "@type": "rdfs:Class", - "rdfs:comment": "Name of software used to generate the information contained in the file. String", - "rdfs:label": "SoftwareandVersion", - "rdfs:subClassOf": [ - { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Software and Version", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, { "@id": "bts:ImageObjectClass", "@type": "rdfs:Class", @@ -259620,7 +271568,7 @@ } ], "sms:displayName": "Individual Sex", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "str" ] @@ -259659,7 +271607,7 @@ } ], "sms:displayName": "Individual Gender", - "sms:required": "sms:true", + "sms:required": "sms:false", "sms:validationRules": [ "str" ] @@ -280041,6 +291989,40 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:IndividualVitalStatus", + "@type": "rdfs:Class", + "rdfs:comment": "Text term that describes the patient's current vital status.", + "rdfs:label": "IndividualVitalStatus", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Unspecified" + }, + { + "@id": "bts:Unknown" + }, + { + "@id": "bts:Dead" + }, + { + "@id": "bts:Alive" + }, + { + "@id": "bts:Notreported" + } + ], + "sms:displayName": "Individual Vital Status", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:T0", "@type": "rdfs:Class", @@ -281027,506 +293009,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:3-DimensionalConformalRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "3-DimensionalConformalRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "3-Dimensional Conformal Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AllogeneicHematopoieticStemCellTransplantation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AllogeneicHematopoieticStemCellTransplantation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Allogeneic Hematopoietic Stem Cell Transplantation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:AutologousStemCellTransplantation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "AutologousStemCellTransplantation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Autologous Stem Cell Transplantation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Brachytherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Brachytherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Brachytherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CellularTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CellularTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Cellular Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConcurrentChemoradiation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ConcurrentChemoradiation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Concurrent Chemoradiation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ConventionalRadiotherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ConventionalRadiotherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Conventional Radiotherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ElectronBeamRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ElectronBeamRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Electron Beam Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ExternalBeamRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ExternalBeamRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "External Beam Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:High-DoseRateBrachytherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "High-DoseRateBrachytherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "High-Dose Rate Brachytherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Intensity-ModulatedRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Intensity-ModulatedRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Intensity-Modulated Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Low-DoseRateBrachytherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Low-DoseRateBrachytherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Low-Dose Rate Brachytherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:OrganTransplantation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "OrganTransplantation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Organ Transplantation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PalliativeCare", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PalliativeCare", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Palliative Care", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Pharmacotherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Pharmacotherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Pharmacotherapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PhotonBeamRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PhotonBeamRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Photon Beam Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ProtonBeamRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ProtonBeamRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Proton Beam Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RadiofrequencyAblation", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RadiofrequencyAblation", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Radiofrequency Ablation", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Radiopharmaceutical", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Radiopharmaceutical", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Radiopharmaceutical", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StemCellTransplant", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "StemCellTransplant", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Stem Cell Transplant", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StereotacticBodyRadiationTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "StereotacticBodyRadiationTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Stereotactic Body Radiation Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:StereotacticRadiosurgery", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "StereotacticRadiosurgery", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Stereotactic Radiosurgery", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:SurgicalProcedure", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "SurgicalProcedure", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Surgical Procedure", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TargetedMolecularTherapy", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TargetedMolecularTherapy", - "rdfs:subClassOf": [ - { - "@id": "bts:IndividualTreatmentType" - }, - { - "@id": "bts:ModelTreatmentType" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Targeted Molecular Therapy", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:M0", "@type": "rdfs:Class", @@ -281613,10 +293095,10 @@ "sms:validationRules": [] }, { - "@id": "bts:MX", + "@id": "bts:CM0(i+)", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "MX", + "rdfs:label": "CM0(i+)", "rdfs:subClassOf": [ { "@id": "bts:IndividualMetastasisStage" @@ -281625,32 +293107,32 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "MX", + "sms:displayName": "cM0 (i+)", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CM0(i+)", + "@id": "bts:NotAllowedtoCollect", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CM0(i+)", + "rdfs:label": "NotAllowedtoCollect", "rdfs:subClassOf": [ { - "@id": "bts:IndividualMetastasisStage" + "@id": "bts:IndividualRecurrenceStatus" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "cM0 (i+)", + "sms:displayName": "Not Allowed to Collect", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:NotAllowedtoCollect", + "@id": "bts:Censored", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "NotAllowedtoCollect", + "rdfs:label": "Censored", "rdfs:subClassOf": [ { "@id": "bts:IndividualRecurrenceStatus" @@ -281659,24 +293141,41 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Not Allowed to Collect", + "sms:displayName": "Censored", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Censored", + "@id": "bts:Dead", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Censored", + "rdfs:label": "Dead", "rdfs:subClassOf": [ { - "@id": "bts:IndividualRecurrenceStatus" + "@id": "bts:IndividualVitalStatus" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Censored", + "sms:displayName": "Dead", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Alive", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Alive", + "rdfs:subClassOf": [ + { + "@id": "bts:IndividualVitalStatus" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Alive", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -283069,7 +294568,7 @@ } ], "sms:displayName": "Model Sex", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [] }, { @@ -288266,23 +299765,6 @@ "sms:required": "sms:true", "sms:validationRules": [] }, - { - "@id": "bts:ModelTumorType", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ModelTumorType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Model Tumor Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:ModelTumorSubtype", "@type": "rdfs:Class", @@ -288364,6 +299846,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -288402,7 +299887,7 @@ } ], "sms:displayName": "Model Species", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "list like" ] @@ -288421,7 +299906,7 @@ "@id": "http://schema.biothings.io" }, "sms:displayName": "Model Type", - "sms:required": "sms:false", + "sms:required": "sms:true", "sms:validationRules": [ "str" ] @@ -303298,6 +314783,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Person Grant Number", @@ -303930,6 +315448,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Project Grant Number", @@ -304182,6 +315733,9 @@ { "@id": "bts:3C-qPCR" }, + { + "@id": "bts:3DATAC-PALM" + }, { "@id": "bts:3DBioprinting" }, @@ -305303,6 +316857,9 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "Publication Assay", @@ -306879,6 +318436,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Publication Grant Number", @@ -306916,7 +318506,10 @@ "@id": "bts:NGSLibraryStrategy" }, { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" }, { "@id": "bts:NGSLibrarySelectionMethod" @@ -306982,789 +318575,6 @@ "unique" ] }, - { - "@id": "bts:NGSLibraryStrategy", - "@type": "rdfs:Class", - "rdfs:comment": "The assay associated with the nucleic acid library (e.g., RNA-Seq, ChIP-Seq)", - "rdfs:label": "NGSLibraryStrategy", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:AMPLICON" - }, - { - "@id": "bts:ATAC-seq" - }, - { - "@id": "bts:Bisulfite-Seq" - }, - { - "@id": "bts:ChIA-PET" - }, - { - "@id": "bts:ChIP-Seq" - }, - { - "@id": "bts:CLONE" - }, - { - "@id": "bts:CLONEEND" - }, - { - "@id": "bts:CTS" - }, - { - "@id": "bts:Spatial-tx" - }, - { - "@id": "bts:SnATAC-Seq" - }, - { - "@id": "bts:DNase-Hypersensitivity" - }, - { - "@id": "bts:ScMultiome" - }, - { - "@id": "bts:EST" - }, - { - "@id": "bts:FAIRE-seq" - }, - { - "@id": "bts:FINISHING" - }, - { - "@id": "bts:FL-cDNA" - }, - { - "@id": "bts:Hi-C" - }, - { - "@id": "bts:MBD-Seq" - }, - { - "@id": "bts:MeDIP-Seq" - }, - { - "@id": "bts:MiRNA-Seq" - }, - { - "@id": "bts:MNase-Seq" - }, - { - "@id": "bts:MRE-Seq" - }, - { - "@id": "bts:NcRNA-Seq" - }, - { - "@id": "bts:Other" - }, - { - "@id": "bts:POOLCLONE" - }, - { - "@id": "bts:RAD-Seq" - }, - { - "@id": "bts:RIP-Seq" - }, - { - "@id": "bts:RNA-Seq" - }, - { - "@id": "bts:SELEX" - }, - { - "@id": "bts:DNA-Seq" - }, - { - "@id": "bts:SsRNA-seq" - }, - { - "@id": "bts:Synthetic-Long-Read" - }, - { - "@id": "bts:Targeted-Capture" - }, - { - "@id": "bts:TetheredChromatinConformationCapture" - }, - { - "@id": "bts:Tn-Seq" - }, - { - "@id": "bts:WCS" - }, - { - "@id": "bts:WGA" - }, - { - "@id": "bts:WGS" - }, - { - "@id": "bts:WXS" - } - ], - "sms:displayName": "NGS Library Strategy", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibrarySource", - "@type": "rdfs:Class", - "rdfs:comment": "The type of source material being sequenced.", - "rdfs:label": "NGSLibrarySource", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Genomic" - }, - { - "@id": "bts:GenomicSingleCell" - }, - { - "@id": "bts:Metagenomic" - }, - { - "@id": "bts:SingleNucleus" - }, - { - "@id": "bts:SingleCell" - }, - { - "@id": "bts:Metatranscriptomic" - }, - { - "@id": "bts:Other" - }, - { - "@id": "bts:Synthetic" - }, - { - "@id": "bts:Transcriptomic" - }, - { - "@id": "bts:TranscriptomicSingleCell" - }, - { - "@id": "bts:ViralRNA" - } - ], - "sms:displayName": "NGS Library Source", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibrarySelectionMethod", - "@type": "rdfs:Class", - "rdfs:comment": "How nucleic acid molecules are isolated.", - "rdfs:label": "NGSLibrarySelectionMethod", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:5-methylcytidineantibody" - }, - { - "@id": "bts:CAGE" - }, - { - "@id": "bts:RRNADepletion" - }, - { - "@id": "bts:CDNA" - }, - { - "@id": "bts:CDNAoligoDT" - }, - { - "@id": "bts:CDNArandompriming" - }, - { - "@id": "bts:CF-H" - }, - { - "@id": "bts:CF-M" - }, - { - "@id": "bts:CF-S" - }, - { - "@id": "bts:CF-T" - }, - { - "@id": "bts:Poly-TEnrichment" - }, - { - "@id": "bts:ChIP" - }, - { - "@id": "bts:DNAse" - }, - { - "@id": "bts:HMPR" - }, - { - "@id": "bts:HybridSelection" - }, - { - "@id": "bts:Notapplicable" - }, - { - "@id": "bts:InverserRNA" - }, - { - "@id": "bts:MBD2proteinmethyl-CpGbindingdomain" - }, - { - "@id": "bts:MiRNASizeFractionation" - }, - { - "@id": "bts:MDA" - }, - { - "@id": "bts:MF" - }, - { - "@id": "bts:MNase" - }, - { - "@id": "bts:MSLL" - }, - { - "@id": "bts:Oligo-dT" - }, - { - "@id": "bts:Other" - }, - { - "@id": "bts:Padlockprobescapturemethod" - }, - { - "@id": "bts:PCR" - }, - { - "@id": "bts:PolyA" - }, - { - "@id": "bts:RACE" - }, - { - "@id": "bts:Random" - }, - { - "@id": "bts:RandomPCR" - }, - { - "@id": "bts:ReducedRepresentation" - }, - { - "@id": "bts:Repeatfractionation" - }, - { - "@id": "bts:RestrictionDigest" - }, - { - "@id": "bts:RT-PCR" - }, - { - "@id": "bts:Sizefractionation" - }, - { - "@id": "bts:AffinityEnrichment" - }, - { - "@id": "bts:Unspecified" - } - ], - "sms:displayName": "NGS Library Selection Method", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibraryLayout", - "@type": "rdfs:Class", - "rdfs:comment": "Text description of the library layout, one of Paired-end or Single.", - "rdfs:label": "NGSLibraryLayout", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:Paired-end" - }, - { - "@id": "bts:Single-indexed" - } - ], - "sms:displayName": "NGS Library Layout", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSSequencingPlatform", - "@type": "rdfs:Class", - "rdfs:comment": "A platform is an object aggregate that is the set of instruments and software needed to perform a process [OBI_0000050]. Specific model of the sequencing instrument.", - "rdfs:label": "NGSSequencingPlatform", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:454GS" - }, - { - "@id": "bts:454GS20" - }, - { - "@id": "bts:454GSFLX" - }, - { - "@id": "bts:454GSFLXTitanium" - }, - { - "@id": "bts:454GSFLX+" - }, - { - "@id": "bts:454GSJunior" - }, - { - "@id": "bts:AB310GeneticAnalyzer" - }, - { - "@id": "bts:AB3130GeneticAnalyzer" - }, - { - "@id": "bts:AB3130xLGeneticAnalyzer" - }, - { - "@id": "bts:AB3500GeneticAnalyzer" - }, - { - "@id": "bts:AB3500xLGeneticAnalyzer" - }, - { - "@id": "bts:AB3730GeneticAnalyzer" - }, - { - "@id": "bts:AB3730xLGeneticAnalyzer" - }, - { - "@id": "bts:AB5500GeneticAnalyzer" - }, - { - "@id": "bts:AB5500x-WlGeneticAnalyzer" - }, - { - "@id": "bts:AB5500xlGeneticAnalyzer" - }, - { - "@id": "bts:ABSOLiD2" - }, - { - "@id": "bts:ABSOLiD3" - }, - { - "@id": "bts:ABSOLiD3PlusSystem" - }, - { - "@id": "bts:ABSOLiD4" - }, - { - "@id": "bts:ABSOLiD4hqSystem" - }, - { - "@id": "bts:ABSOLiDPISystem" - }, - { - "@id": "bts:ABSOLiDSystem" - }, - { - "@id": "bts:BGISEQ-500" - }, - { - "@id": "bts:CompleteGenomics" - }, - { - "@id": "bts:DNBSEQ-G400" - }, - { - "@id": "bts:DNBSEQ-G50" - }, - { - "@id": "bts:DNBSEQ-T7" - }, - { - "@id": "bts:GridION" - }, - { - "@id": "bts:HelicosHeliScope" - }, - { - "@id": "bts:IlluminaGenomeAnalyzer" - }, - { - "@id": "bts:IlluminaGenomeAnalyzerII" - }, - { - "@id": "bts:IlluminaGenomeAnalyzerIIx" - }, - { - "@id": "bts:IlluminaHiScanSQ" - }, - { - "@id": "bts:IlluminaHiSeq1000" - }, - { - "@id": "bts:IlluminaHiSeq1500" - }, - { - "@id": "bts:IlluminaHiSeq2000" - }, - { - "@id": "bts:IlluminaHiSeq2500" - }, - { - "@id": "bts:IlluminaHiSeq3000" - }, - { - "@id": "bts:IlluminaHiSeq4000" - }, - { - "@id": "bts:IlluminaHiSeqXFive" - }, - { - "@id": "bts:IlluminaHiSeqXTen" - }, - { - "@id": "bts:IlluminaiSeq100" - }, - { - "@id": "bts:IlluminaMiniSeq" - }, - { - "@id": "bts:IlluminaMiSeq" - }, - { - "@id": "bts:IlluminaNextSeq" - }, - { - "@id": "bts:IlluminaNextSeq2500" - }, - { - "@id": "bts:IlluminaNextSeq500" - }, - { - "@id": "bts:IlluminaNextSeq550" - }, - { - "@id": "bts:IlluminaNovaSeq" - }, - { - "@id": "bts:IlluminaNovaSeq6000" - }, - { - "@id": "bts:IlluminaNovaSeqXPlus" - }, - { - "@id": "bts:IonTorrentPGM" - }, - { - "@id": "bts:IonTorrentProton" - }, - { - "@id": "bts:IonTorrentS5" - }, - { - "@id": "bts:IonTorrentS5XL" - }, - { - "@id": "bts:MGISEQ-2000RS" - }, - { - "@id": "bts:MinION" - }, - { - "@id": "bts:NotReported" - }, - { - "@id": "bts:Other" - }, - { - "@id": "bts:PacBioRS" - }, - { - "@id": "bts:PacBioRSII" - }, - { - "@id": "bts:PacBioSequel" - }, - { - "@id": "bts:PacBioSequelII" - }, - { - "@id": "bts:PromethION" - }, - { - "@id": "bts:UltimaGenomicsUG100" - }, - { - "@id": "bts:Unknown" - } - ], - "sms:displayName": "NGS Sequencing Platform", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSSequencingDesignDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Free-form description of the methods used to create the sequencing library; a brief 'materials and methods' section.", - "rdfs:label": "NGSSequencingDesignDescription", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Sequencing Design Description", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSReadLength", - "@type": "rdfs:Class", - "rdfs:comment": "The average length of the sequencing reads. Can be integer, null", - "rdfs:label": "NGSReadLength", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Read Length", - "sms:required": "sms:true", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSRawReads", - "@type": "rdfs:Class", - "rdfs:comment": "Reads not yet analyzed in any way to be used for data analysis. The number of reads that pass filter from the flow cell represented in the FASTQ file.", - "rdfs:label": "NGSRawReads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Raw Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSUniqueBases", - "@type": "rdfs:Class", - "rdfs:comment": "Count of unique basecalls present in the data.", - "rdfs:label": "NGSUniqueBases", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Unique Bases", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSLibraryPreparationKitName", - "@type": "rdfs:Class", - "rdfs:comment": "Name of Library Preparation Kit. String", - "rdfs:label": "NGSLibraryPreparationKitName", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Library Preparation Kit Name", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibraryPreparationKitVendor", - "@type": "rdfs:Class", - "rdfs:comment": "Vendor of Library Preparation Kit. String", - "rdfs:label": "NGSLibraryPreparationKitVendor", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Library Preparation Kit Vendor", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibraryPreparationKitVersion", - "@type": "rdfs:Class", - "rdfs:comment": "Version of Library Preparation Kit. String", - "rdfs:label": "NGSLibraryPreparationKitVersion", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Library Preparation Kit Version", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSReadIndicator", - "@type": "rdfs:Class", - "rdfs:comment": "Indicate if this is Read 1 (R1), Read 2 (R2), Index Reads (I1), or Other", - "rdfs:label": "NGSReadIndicator", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:R1" - }, - { - "@id": "bts:R2" - }, - { - "@id": "bts:R1&R2" - }, - { - "@id": "bts:I1" - }, - { - "@id": "bts:Other" - } - ], - "sms:displayName": "NGS Read Indicator", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:NGSLibraryPreparationDaysfromIndex", - "@type": "rdfs:Class", - "rdfs:comment": "Number of days between sample for assay was received in lab and the libraries were prepared for sequencing [number]. If not applicable please enter 'Not Applicable'", - "rdfs:label": "NGSLibraryPreparationDaysfromIndex", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Library Preparation Days from Index", - "sms:required": "sms:false", - "sms:validationRules": [ - "regex match \\d+$|Not\\sApplicable$|unknown$" - ] - }, - { - "@id": "bts:NGSSequencingLibraryConstructionDaysfromIndex", - "@type": "rdfs:Class", - "rdfs:comment": "Number of days between sample for assay was received in lab and day of sequencing library construction [number]. If not applicable please enter 'Not Applicable'", - "rdfs:label": "NGSSequencingLibraryConstructionDaysfromIndex", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Sequencing Library Construction Days from Index", - "sms:required": "sms:true", - "sms:validationRules": [ - "regex match \\d+$|Not\\sApplicable$|unknown$" - ] - }, { "@id": "bts:5-methylcytidineantibody", "@type": "rdfs:Class", @@ -308094,23 +318904,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:MF", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MF", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySelectionMethod" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MF", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:MNase", "@type": "rdfs:Class", @@ -308903,172 +319696,87 @@ "sms:validationRules": [] }, { - "@id": "bts:Genomic", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Genomic", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GenomicSingleCell", + "@id": "bts:BulkCells", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "GenomicSingleCell", + "rdfs:label": "BulkCells", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Genomic Single Cell", + "sms:displayName": "Bulk Cells", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Metagenomic", + "@id": "bts:BulkTissue", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Metagenomic", + "rdfs:label": "BulkTissue", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Metagenomic", + "sms:displayName": "Bulk Tissue", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SingleNucleus", + "@id": "bts:BulkNuclei", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SingleNucleus", + "rdfs:label": "BulkNuclei", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Single Nucleus", + "sms:displayName": "Bulk Nuclei", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:SingleCell", + "@id": "bts:Single-nuclei", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "SingleCell", + "rdfs:label": "Single-nuclei", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Single Cell", + "sms:displayName": "Single-nuclei", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Metatranscriptomic", + "@id": "bts:Single-cells", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Metatranscriptomic", + "rdfs:label": "Single-cells", "rdfs:subClassOf": [ { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Metatranscriptomic", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Synthetic", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Synthetic", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Synthetic", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Transcriptomic", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Transcriptomic", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Transcriptomic", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TranscriptomicSingleCell", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TranscriptomicSingleCell", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Transcriptomic Single Cell", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:ViralRNA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "ViralRNA", - "rdfs:subClassOf": [ - { - "@id": "bts:NGSLibrarySource" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Viral RNA", + "sms:displayName": "Single-cells", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -310262,6 +320970,91 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:GenomicDNA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GenomicDNA", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genomic DNA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Metagenomic", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Metagenomic", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Metagenomic", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Metatranscriptomic", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Metatranscriptomic", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Metatranscriptomic", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Transcriptome", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Transcriptome", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Transcriptome", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ViralRNA", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "ViralRNA", + "rdfs:subClassOf": [ + { + "@id": "bts:NGSLibrarySourceMolecule" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Viral RNA", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:SequencingLevel2", "@type": "rdfs:Class", @@ -310294,7 +321087,10 @@ "@id": "bts:NGSLibraryStrategy" }, { - "@id": "bts:NGSLibrarySource" + "@id": "bts:NGSLibrarySourceMaterial" + }, + { + "@id": "bts:NGSLibrarySourceMolecule" }, { "@id": "bts:NGSLibrarySelectionMethod" @@ -310382,101 +321178,6 @@ "list like" ] }, - { - "@id": "bts:NGSStitchedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Represents consensus from the overlapping sequence of read 1 and 2. This is a % of the aligned reads that were overlapped and consensus confirmed, usually upward of 80% but less in terms of number of reads than aligned reads", - "rdfs:label": "NGSStitchedReads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Stitched Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSAlignedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Is a sequence that has been aligned to a gene/probe. Typically these reads can number from the hundreds of thousands to tens of millions. In GeoMx alignment is via mapping the RTS ID to a white list of sequences that represent targets.", - "rdfs:label": "NGSAlignedReads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Aligned Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSDeduplicatedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Is the replacement of blocks of duplicate data with a Virtual Index Pointer linking the new sub-block to the existing block of data in a duplicate repository. This is used to reduce the amount of space need to store the data.", - "rdfs:label": "NGSDeduplicatedReads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Deduplicated Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSTrimmedReads", - "@type": "rdfs:Class", - "rdfs:comment": "Number of the reads remaining after trimming has been applied.", - "rdfs:label": "NGSTrimmedReads", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Trimmed Reads", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:GenomicReference", - "@type": "rdfs:Class", - "rdfs:comment": "Exact version of the human genome reference used in the alignment of reads (e.g. GCF_000001405.39)", - "rdfs:label": "GenomicReference", - "rdfs:subClassOf": [ - { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Genomic Reference", - "sms:required": "sms:true", - "sms:validationRules": [ - "str" - ] - }, { "@id": "bts:SequencingLevel3", "@type": "rdfs:Class", @@ -310567,132 +321268,6 @@ "list like" ] }, - { - "@id": "bts:NGSUniqueProbeCount", - "@type": "rdfs:Class", - "rdfs:comment": "Total number of unique probes reported.", - "rdfs:label": "NGSUniqueProbeCount", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Unique Probe Count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSUniqueTargetCount", - "@type": "rdfs:Class", - "rdfs:comment": "Total number of unique genes reported.", - "rdfs:label": "NGSUniqueTargetCount", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NGS Unique Target Count", - "sms:required": "sms:false", - "sms:validationRules": [ - "num" - ] - }, - { - "@id": "bts:NGSMatrixType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of count data stored in matrix.", - "rdfs:label": "NGSMatrixType", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "schema:rangeIncludes": [ - { - "@id": "bts:RawCounts" - }, - { - "@id": "bts:NormalizedCounts" - }, - { - "@id": "bts:ScaledCounts" - }, - { - "@id": "bts:BatchCorrectedCounts" - } - ], - "sms:displayName": "NGS Matrix Type", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:WorkflowType", - "@type": "rdfs:Class", - "rdfs:comment": "Type of computational workflow used to generate the file.", - "rdfs:label": "WorkflowType", - "rdfs:subClassOf": [ - { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Type", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:WorkflowParameterDescription", - "@type": "rdfs:Class", - "rdfs:comment": "Link or text description of flags or options provided to the workflow used to generate the file.", - "rdfs:label": "WorkflowParameterDescription", - "rdfs:subClassOf": [ - { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Parameter Description", - "sms:required": "sms:false", - "sms:validationRules": [ - "str" - ] - }, - { - "@id": "bts:WorkflowLink", - "@type": "rdfs:Class", - "rdfs:comment": "Link to documentation or webpage associated with the computational workflow used to generate the file.", - "rdfs:label": "WorkflowLink", - "rdfs:subClassOf": [ - { - "@id": "bts:Shared" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Workflow Link", - "sms:required": "sms:false", - "sms:validationRules": [ - "url" - ] - }, { "@id": "bts:RawCounts", "@type": "rdfs:Class", @@ -311028,564 +321603,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:IRB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IRB", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "IRB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:HMB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "HMB", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "HMB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PUB", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PUB", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PUB", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:US", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "US", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "US", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPOA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPOA", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPOA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:COL", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "COL", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "COL", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NCU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NCU", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NCU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPUNCU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPUNCU", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPUNCU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RS", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:TS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "TS", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "TS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NRES", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NRES", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NRES", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NPU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NPU", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NPU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DUM", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DUM", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DUM", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:POA", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "POA", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "POA", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:MOR", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "MOR", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "MOR", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GSO", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GSO", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GSO", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:RTN", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "RTN", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "RTN", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:CC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "CC", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "CC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:NMDS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "NMDS", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "NMDS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:IS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "IS", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "IS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GS", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:DS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DS", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GRU", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GRU", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "GRU", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:PS", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "PS", - "rdfs:subClassOf": [ - { - "@id": "bts:DataUseCodes" - }, - { - "@id": "bts:DSPDataUseCodes" - }, - { - "@id": "bts:StudyDataUseCodes" - }, - { - "@id": "bts:ToolInputFormat" - }, - { - "@id": "bts:ToolOutputFormat" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "PS", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:ProjectViewKey", "@type": "rdfs:Class", @@ -312355,6 +322372,9 @@ { "@id": "bts:3C-qPCR" }, + { + "@id": "bts:3DATAC-PALM" + }, { "@id": "bts:3DBioprinting" }, @@ -313476,6 +323496,9 @@ }, { "@id": "bts:LightSheetMicroscopy" + }, + { + "@id": "bts:CODEX" } ], "sms:displayName": "DSP Dataset Assay", @@ -313588,6 +323611,9 @@ { "@id": "bts:Multispecies" }, + { + "@id": "bts:NotApplicable" + }, { "@id": "bts:Opossum" }, @@ -314576,7 +324602,7 @@ { "@id": "bts:DSPDatasetFileFormats", "@type": "rdfs:Class", - "rdfs:comment": "A list of file formats associated with the dataset. Multiple values permitted, comma separated.", + "rdfs:comment": "The list of extensions (e.g., csv, fastq, geojson, qpath, etc.) associated with files that should be included in the dataset. Multiple values permitted, comma separated.", "rdfs:label": "DSPDatasetFileFormats", "rdfs:subClassOf": [ { @@ -314586,248 +324612,6 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "schema:rangeIncludes": [ - { - "@id": "bts:AVI" - }, - { - "@id": "bts:BAI" - }, - { - "@id": "bts:BAM" - }, - { - "@id": "bts:BED" - }, - { - "@id": "bts:CDS" - }, - { - "@id": "bts:CHP" - }, - { - "@id": "bts:COOL" - }, - { - "@id": "bts:CSV" - }, - { - "@id": "bts:DAE" - }, - { - "@id": "bts:DB" - }, - { - "@id": "bts:DSStore" - }, - { - "@id": "bts:FASTA" - }, - { - "@id": "bts:FASTQ" - }, - { - "@id": "bts:FCS" - }, - { - "@id": "bts:FIG" - }, - { - "@id": "bts:FREQ" - }, - { - "@id": "bts:GCG" - }, - { - "@id": "bts:GCT" - }, - { - "@id": "bts:GCTx" - }, - { - "@id": "bts:GFF3" - }, - { - "@id": "bts:GTF" - }, - { - "@id": "bts:GZIPFormat" - }, - { - "@id": "bts:HDF" - }, - { - "@id": "bts:HDF5" - }, - { - "@id": "bts:HTML" - }, - { - "@id": "bts:IDAT" - }, - { - "@id": "bts:JPG" - }, - { - "@id": "bts:JSON" - }, - { - "@id": "bts:LIF" - }, - { - "@id": "bts:MAP" - }, - { - "@id": "bts:MAT" - }, - { - "@id": "bts:MATLABscript" - }, - { - "@id": "bts:MSF" - }, - { - "@id": "bts:MTX" - }, - { - "@id": "bts:PDF" - }, - { - "@id": "bts:PNG" - }, - { - "@id": "bts:PZFX" - }, - { - "@id": "bts:PythonScript" - }, - { - "@id": "bts:RFileFormat" - }, - { - "@id": "bts:RAW" - }, - { - "@id": "bts:RDS" - }, - { - "@id": "bts:ROUT" - }, - { - "@id": "bts:RPROJ" - }, - { - "@id": "bts:RTF" - }, - { - "@id": "bts:SGI" - }, - { - "@id": "bts:SRA" - }, - { - "@id": "bts:STAT" - }, - { - "@id": "bts:TARFormat" - }, - { - "@id": "bts:TDF" - }, - { - "@id": "bts:TIFF" - }, - { - "@id": "bts:TSV" - }, - { - "@id": "bts:TXT" - }, - { - "@id": "bts:VCF" - }, - { - "@id": "bts:WIG" - }, - { - "@id": "bts:XML" - }, - { - "@id": "bts:ZIP" - }, - { - "@id": "bts:Bed12" - }, - { - "@id": "bts:Bedgraph" - }, - { - "@id": "bts:Cel" - }, - { - "@id": "bts:Cloupe" - }, - { - "@id": "bts:Docx" - }, - { - "@id": "bts:MzIdentML" - }, - { - "@id": "bts:MzXML" - }, - { - "@id": "bts:Pptx" - }, - { - "@id": "bts:Rcc" - }, - { - "@id": "bts:Xls" - }, - { - "@id": "bts:Xlsx" - }, - { - "@id": "bts:MGF" - }, - { - "@id": "bts:BIGWIG" - }, - { - "@id": "bts:H5AD" - }, - { - "@id": "bts:H5" - }, - { - "@id": "bts:SF" - }, - { - "@id": "bts:PKL" - }, - { - "@id": "bts:BPM" - }, - { - "@id": "bts:Unspecified" - }, - { - "@id": "bts:PendingAnnotation" - }, - { - "@id": "bts:Maf" - }, - { - "@id": "bts:CLS" - }, - { - "@id": "bts:SCN" - }, - { - "@id": "bts:SVS" - } - ], "sms:displayName": "DSP Dataset File Formats", "sms:required": "sms:false", "sms:validationRules": [ @@ -315562,6 +325346,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "DSP Dataset Grant Number", @@ -315630,7 +325447,7 @@ { "@id": "bts:StudyDescription", "@type": "rdfs:Class", - "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, etc.", + "rdfs:comment": "Description of the study, including the types of experimental assays, model systems, types of analysis, description of cohort, associated vulnerable populations, special categories of data, rare diseases, etc. Maps to DUOplus2.", "rdfs:label": "StudyDescription", "rdfs:subClassOf": [ { @@ -315684,10 +325501,29 @@ "int" ] }, + { + "@id": "bts:StudyNumberofSamples", + "@type": "rdfs:Class", + "rdfs:comment": "The number of specimens associated with systematic investigation into a subject.", + "rdfs:label": "StudyNumberofSamples", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Study Number of Samples", + "sms:required": "sms:true", + "sms:validationRules": [ + "int" + ] + }, { "@id": "bts:StudyDe-identificationMethodType", "@type": "rdfs:Class", - "rdfs:comment": "General description of the de-identification method", + "rdfs:comment": "General description of the de-identification method. Maps to DUOplus3.", "rdfs:label": "StudyDe-identificationMethodType", "rdfs:subClassOf": [ { @@ -315737,7 +325573,7 @@ { "@id": "bts:StudyDe-identificationMethodSoftware", "@type": "rdfs:Class", - "rdfs:comment": "Software that was used to de-identify the images (if used)", + "rdfs:comment": "Software that was used to de-identify the data (if used)", "rdfs:label": "StudyDe-identificationMethodSoftware", "rdfs:subClassOf": [ { @@ -315787,7 +325623,7 @@ { "@id": "bts:StudyReuseStatement", "@type": "rdfs:Class", - "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s).", + "rdfs:comment": "The funder-, contributor-, patient-, etc., derived content that includes terms, conditions, or statements associated with accessing and reusing the resource(s). Maps to DUOplus7.", "rdfs:label": "StudyReuseStatement", "rdfs:subClassOf": [ { @@ -315806,7 +325642,7 @@ { "@id": "bts:StudyDataUseCodes", "@type": "rdfs:Class", - "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found here: https://mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", + "rdfs:comment": "DUO code - A data item that is used to indicate consent permissions for datasets and/or materials and relates to the purposes for which datasets and/or material might be removed, stored, or used. Available DUO code definitions can be found at mc2-center.github.io/data-models/valid_values/sharingPlans/#attribute-dsp-data-use-codes", "rdfs:label": "StudyDataUseCodes", "rdfs:subClassOf": [ { @@ -315899,7 +325735,7 @@ { "@id": "bts:StudyLicense", "@type": "rdfs:Class", - "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license.", + "rdfs:comment": "Official or legal permission to do or own a specified thing. Studies with data that will be submitted to CDS are required to provide a license. Maps to DUOplus6.", "rdfs:label": "StudyLicense", "rdfs:subClassOf": [ { @@ -315921,6 +325757,12 @@ }, { "@id": "bts:CCBY-NC3.0" + }, + { + "@id": "bts:CCBY-SA4.0" + }, + { + "@id": "bts:CCBY-NC-SA4.0" } ], "sms:displayName": "Study License", @@ -315928,27 +325770,844 @@ "sms:validationRules": [] }, { - "@id": "bts:Manual", + "@id": "bts:StudySourceGeography", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Manual", + "rdfs:comment": "The list of country(ies) where the data associated with this study was generated. Maps to DUOplus1.", + "rdfs:label": "StudySourceGeography", "rdfs:subClassOf": [ { - "@id": "bts:StudyDe-identificationMethodType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Manual", + "schema:rangeIncludes": [ + { + "@id": "bts:AD" + }, + { + "@id": "bts:AE" + }, + { + "@id": "bts:AF" + }, + { + "@id": "bts:AG" + }, + { + "@id": "bts:AI" + }, + { + "@id": "bts:AL" + }, + { + "@id": "bts:AM" + }, + { + "@id": "bts:AO" + }, + { + "@id": "bts:AQ" + }, + { + "@id": "bts:AR" + }, + { + "@id": "bts:AS" + }, + { + "@id": "bts:AT" + }, + { + "@id": "bts:AU" + }, + { + "@id": "bts:AW" + }, + { + "@id": "bts:AX" + }, + { + "@id": "bts:AZ" + }, + { + "@id": "bts:BA" + }, + { + "@id": "bts:BB" + }, + { + "@id": "bts:BD" + }, + { + "@id": "bts:BE" + }, + { + "@id": "bts:BF" + }, + { + "@id": "bts:BG" + }, + { + "@id": "bts:BH" + }, + { + "@id": "bts:BI" + }, + { + "@id": "bts:BJ" + }, + { + "@id": "bts:BL" + }, + { + "@id": "bts:BM" + }, + { + "@id": "bts:BN" + }, + { + "@id": "bts:BO" + }, + { + "@id": "bts:BQ" + }, + { + "@id": "bts:BR" + }, + { + "@id": "bts:BS" + }, + { + "@id": "bts:BT" + }, + { + "@id": "bts:BV" + }, + { + "@id": "bts:BW" + }, + { + "@id": "bts:BY" + }, + { + "@id": "bts:BZ" + }, + { + "@id": "bts:CA" + }, + { + "@id": "bts:CC" + }, + { + "@id": "bts:CD" + }, + { + "@id": "bts:CF" + }, + { + "@id": "bts:CG" + }, + { + "@id": "bts:CH" + }, + { + "@id": "bts:CI" + }, + { + "@id": "bts:CK" + }, + { + "@id": "bts:CL" + }, + { + "@id": "bts:CM" + }, + { + "@id": "bts:CN" + }, + { + "@id": "bts:CO" + }, + { + "@id": "bts:CR" + }, + { + "@id": "bts:CU" + }, + { + "@id": "bts:CV" + }, + { + "@id": "bts:CW" + }, + { + "@id": "bts:CX" + }, + { + "@id": "bts:CY" + }, + { + "@id": "bts:CZ" + }, + { + "@id": "bts:DE" + }, + { + "@id": "bts:DJ" + }, + { + "@id": "bts:DK" + }, + { + "@id": "bts:DM" + }, + { + "@id": "bts:DO" + }, + { + "@id": "bts:DZ" + }, + { + "@id": "bts:EC" + }, + { + "@id": "bts:EE" + }, + { + "@id": "bts:EG" + }, + { + "@id": "bts:EH" + }, + { + "@id": "bts:ER" + }, + { + "@id": "bts:ES" + }, + { + "@id": "bts:ET" + }, + { + "@id": "bts:FI" + }, + { + "@id": "bts:FJ" + }, + { + "@id": "bts:FK" + }, + { + "@id": "bts:FM" + }, + { + "@id": "bts:FO" + }, + { + "@id": "bts:FR" + }, + { + "@id": "bts:GA" + }, + { + "@id": "bts:GB" + }, + { + "@id": "bts:GD" + }, + { + "@id": "bts:GE" + }, + { + "@id": "bts:GF" + }, + { + "@id": "bts:GG" + }, + { + "@id": "bts:GH" + }, + { + "@id": "bts:GI" + }, + { + "@id": "bts:GL" + }, + { + "@id": "bts:GM" + }, + { + "@id": "bts:GN" + }, + { + "@id": "bts:GP" + }, + { + "@id": "bts:GQ" + }, + { + "@id": "bts:GR" + }, + { + "@id": "bts:GS" + }, + { + "@id": "bts:GT" + }, + { + "@id": "bts:GU" + }, + { + "@id": "bts:GW" + }, + { + "@id": "bts:GY" + }, + { + "@id": "bts:HK" + }, + { + "@id": "bts:HM" + }, + { + "@id": "bts:HN" + }, + { + "@id": "bts:HR" + }, + { + "@id": "bts:HT" + }, + { + "@id": "bts:HU" + }, + { + "@id": "bts:ID" + }, + { + "@id": "bts:IE" + }, + { + "@id": "bts:IL" + }, + { + "@id": "bts:IM" + }, + { + "@id": "bts:IN" + }, + { + "@id": "bts:IO" + }, + { + "@id": "bts:IQ" + }, + { + "@id": "bts:IR" + }, + { + "@id": "bts:IS" + }, + { + "@id": "bts:IT" + }, + { + "@id": "bts:JE" + }, + { + "@id": "bts:JM" + }, + { + "@id": "bts:JO" + }, + { + "@id": "bts:JP" + }, + { + "@id": "bts:KE" + }, + { + "@id": "bts:KG" + }, + { + "@id": "bts:KH" + }, + { + "@id": "bts:KI" + }, + { + "@id": "bts:KM" + }, + { + "@id": "bts:KN" + }, + { + "@id": "bts:KP" + }, + { + "@id": "bts:KR" + }, + { + "@id": "bts:KW" + }, + { + "@id": "bts:KY" + }, + { + "@id": "bts:KZ" + }, + { + "@id": "bts:LA" + }, + { + "@id": "bts:LB" + }, + { + "@id": "bts:LC" + }, + { + "@id": "bts:LI" + }, + { + "@id": "bts:LK" + }, + { + "@id": "bts:LR" + }, + { + "@id": "bts:LS" + }, + { + "@id": "bts:LT" + }, + { + "@id": "bts:LU" + }, + { + "@id": "bts:LV" + }, + { + "@id": "bts:LY" + }, + { + "@id": "bts:MA" + }, + { + "@id": "bts:MC" + }, + { + "@id": "bts:MD" + }, + { + "@id": "bts:ME" + }, + { + "@id": "bts:MF" + }, + { + "@id": "bts:MG" + }, + { + "@id": "bts:MH" + }, + { + "@id": "bts:MK" + }, + { + "@id": "bts:ML" + }, + { + "@id": "bts:MM" + }, + { + "@id": "bts:MN" + }, + { + "@id": "bts:MO" + }, + { + "@id": "bts:MP" + }, + { + "@id": "bts:MQ" + }, + { + "@id": "bts:MR" + }, + { + "@id": "bts:MS" + }, + { + "@id": "bts:MT" + }, + { + "@id": "bts:MU" + }, + { + "@id": "bts:MV" + }, + { + "@id": "bts:MW" + }, + { + "@id": "bts:MX" + }, + { + "@id": "bts:MY" + }, + { + "@id": "bts:MZ" + }, + { + "@id": "bts:NA" + }, + { + "@id": "bts:NC" + }, + { + "@id": "bts:NE" + }, + { + "@id": "bts:NF" + }, + { + "@id": "bts:NG" + }, + { + "@id": "bts:NI" + }, + { + "@id": "bts:NL" + }, + { + "@id": "bts:NO" + }, + { + "@id": "bts:NP" + }, + { + "@id": "bts:NR" + }, + { + "@id": "bts:NU" + }, + { + "@id": "bts:NZ" + }, + { + "@id": "bts:OM" + }, + { + "@id": "bts:PA" + }, + { + "@id": "bts:PE" + }, + { + "@id": "bts:PF" + }, + { + "@id": "bts:PG" + }, + { + "@id": "bts:PH" + }, + { + "@id": "bts:PK" + }, + { + "@id": "bts:PL" + }, + { + "@id": "bts:PM" + }, + { + "@id": "bts:PN" + }, + { + "@id": "bts:PR" + }, + { + "@id": "bts:PS" + }, + { + "@id": "bts:PT" + }, + { + "@id": "bts:PW" + }, + { + "@id": "bts:PY" + }, + { + "@id": "bts:QA" + }, + { + "@id": "bts:RE" + }, + { + "@id": "bts:RO" + }, + { + "@id": "bts:RS" + }, + { + "@id": "bts:RU" + }, + { + "@id": "bts:RW" + }, + { + "@id": "bts:SA" + }, + { + "@id": "bts:SB" + }, + { + "@id": "bts:SC" + }, + { + "@id": "bts:SD" + }, + { + "@id": "bts:SE" + }, + { + "@id": "bts:SG" + }, + { + "@id": "bts:SH" + }, + { + "@id": "bts:SI" + }, + { + "@id": "bts:SJ" + }, + { + "@id": "bts:SK" + }, + { + "@id": "bts:SL" + }, + { + "@id": "bts:SM" + }, + { + "@id": "bts:SN" + }, + { + "@id": "bts:SO" + }, + { + "@id": "bts:SR" + }, + { + "@id": "bts:SS" + }, + { + "@id": "bts:ST" + }, + { + "@id": "bts:SV" + }, + { + "@id": "bts:SX" + }, + { + "@id": "bts:SY" + }, + { + "@id": "bts:SZ" + }, + { + "@id": "bts:TC" + }, + { + "@id": "bts:TD" + }, + { + "@id": "bts:TF" + }, + { + "@id": "bts:TG" + }, + { + "@id": "bts:TH" + }, + { + "@id": "bts:TJ" + }, + { + "@id": "bts:TK" + }, + { + "@id": "bts:TL" + }, + { + "@id": "bts:TM" + }, + { + "@id": "bts:TN" + }, + { + "@id": "bts:TO" + }, + { + "@id": "bts:TR" + }, + { + "@id": "bts:TT" + }, + { + "@id": "bts:TV" + }, + { + "@id": "bts:TW" + }, + { + "@id": "bts:TZ" + }, + { + "@id": "bts:UA" + }, + { + "@id": "bts:UG" + }, + { + "@id": "bts:UM" + }, + { + "@id": "bts:US" + }, + { + "@id": "bts:UY" + }, + { + "@id": "bts:UZ" + }, + { + "@id": "bts:VA" + }, + { + "@id": "bts:VC" + }, + { + "@id": "bts:VE" + }, + { + "@id": "bts:VG" + }, + { + "@id": "bts:VI" + }, + { + "@id": "bts:VN" + }, + { + "@id": "bts:VU" + }, + { + "@id": "bts:WF" + }, + { + "@id": "bts:WS" + }, + { + "@id": "bts:YE" + }, + { + "@id": "bts:YT" + }, + { + "@id": "bts:ZA" + }, + { + "@id": "bts:ZM" + }, + { + "@id": "bts:ZW" + } + ], + "sms:displayName": "Study Source Geography", "sms:required": "sms:false", - "sms:validationRules": [] + "sms:validationRules": [ + "list like" + ] }, { - "@id": "bts:Semiautomatic", + "@id": "bts:StudyDataPermission", + "@type": "rdfs:Class", + "rdfs:comment": "The list of entities or objects that define or enforce data sharing permissions. Maps to DUOplus4.", + "rdfs:label": "StudyDataPermission", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Agreement" + }, + { + "@id": "bts:Attestation" + }, + { + "@id": "bts:Award" + }, + { + "@id": "bts:Other" + } + ], + "sms:displayName": "Study Data Permission", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:StudyDataTier", + "@type": "rdfs:Class", + "rdfs:comment": "The access tier(s) associated with the data in this study. Maps to DUOplus5.", + "rdfs:label": "StudyDataTier", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:Anonymous" + }, + { + "@id": "bts:Open" + }, + { + "@id": "bts:Controlled" + }, + { + "@id": "bts:Private" + } + ], + "sms:displayName": "Study Data Tier", + "sms:required": "sms:false", + "sms:validationRules": [ + "list like" + ] + }, + { + "@id": "bts:Manual", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Semiautomatic", + "rdfs:label": "Manual", "rdfs:subClassOf": [ { "@id": "bts:StudyDe-identificationMethodType" @@ -315957,15 +326616,15 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Semiautomatic", + "sms:displayName": "Manual", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:Automatic", + "@id": "bts:Semiautomatic", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Automatic", + "rdfs:label": "Semiautomatic", "rdfs:subClassOf": [ { "@id": "bts:StudyDe-identificationMethodType" @@ -315974,83 +326633,83 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Automatic", + "sms:displayName": "Semiautomatic", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CCBY3.0", + "@id": "bts:Automatic", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CCBY3.0", + "rdfs:label": "Automatic", "rdfs:subClassOf": [ { - "@id": "bts:StudyLicense" + "@id": "bts:StudyDe-identificationMethodType" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CC BY 3.0", + "sms:displayName": "Automatic", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CCBY4.0", + "@id": "bts:DiagnosisDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CCBY4.0", + "rdfs:label": "DiagnosisDate", "rdfs:subClassOf": [ { - "@id": "bts:StudyLicense" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CC BY 4.0", + "sms:displayName": "Diagnosis Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CCBY-NC4.0", + "@id": "bts:EnrollmentDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CCBY-NC4.0", + "rdfs:label": "EnrollmentDate", "rdfs:subClassOf": [ { - "@id": "bts:StudyLicense" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CC BY-NC 4.0", + "sms:displayName": "Enrollment Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CCBY-NC3.0", + "@id": "bts:CollectionDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CCBY-NC3.0", + "rdfs:label": "CollectionDate", "rdfs:subClassOf": [ { - "@id": "bts:StudyLicense" + "@id": "bts:StudyIndexDate" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "CC BY-NC 3.0", + "sms:displayName": "Collection Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:DiagnosisDate", + "@id": "bts:BirthDate", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "DiagnosisDate", + "rdfs:label": "BirthDate", "rdfs:subClassOf": [ { "@id": "bts:StudyIndexDate" @@ -316059,58 +326718,58 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Diagnosis Date", + "sms:displayName": "Birth Date", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:EnrollmentDate", + "@id": "bts:Agreement", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "EnrollmentDate", + "rdfs:label": "Agreement", "rdfs:subClassOf": [ { - "@id": "bts:StudyIndexDate" + "@id": "bts:StudyDataPermission" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Enrollment Date", + "sms:displayName": "Agreement", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:CollectionDate", + "@id": "bts:Attestation", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "CollectionDate", + "rdfs:label": "Attestation", "rdfs:subClassOf": [ { - "@id": "bts:StudyIndexDate" + "@id": "bts:StudyDataPermission" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Collection Date", + "sms:displayName": "Attestation", "sms:required": "sms:false", "sms:validationRules": [] }, { - "@id": "bts:BirthDate", + "@id": "bts:Award", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "BirthDate", + "rdfs:label": "Award", "rdfs:subClassOf": [ { - "@id": "bts:StudyIndexDate" + "@id": "bts:StudyDataPermission" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Birth Date", + "sms:displayName": "Award", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -317256,23 +327915,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:Contributor", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Contributor", - "rdfs:subClassOf": [ - { - "@id": "bts:ToolEntityRole" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Contributor", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:Support", "@type": "rdfs:Class", @@ -317876,6 +328518,39 @@ }, { "@id": "bts:CA282451" + }, + { + "@id": "bts:CA284085" + }, + { + "@id": "bts:CA283749" + }, + { + "@id": "bts:CA289564" + }, + { + "@id": "bts:CA293470" + }, + { + "@id": "bts:CA279722" + }, + { + "@id": "bts:CA290115" + }, + { + "@id": "bts:CA279948" + }, + { + "@id": "bts:CA281216" + }, + { + "@id": "bts:CA292382" + }, + { + "@id": "bts:CA290442" + }, + { + "@id": "bts:CA293853" } ], "sms:displayName": "Tool Grant Number", @@ -321915,26 +332590,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:DCC", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "DCC", - "rdfs:subClassOf": [ - { - "@id": "bts:ToolInputFormat" - }, - { - "@id": "bts:ToolOutputFormat" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "DCC", - "sms:required": "sms:false", - "sms:validationRules": [] - }, { "@id": "bts:DCD", "@type": "rdfs:Class", diff --git a/qc_model/qc_attribute_mapping.csv b/qc_model/qc_attribute_mapping.csv index 5724d57b..ebbae470 100644 --- a/qc_model/qc_attribute_mapping.csv +++ b/qc_model/qc_attribute_mapping.csv @@ -17,6 +17,7 @@ PublicationView,Publication Tumor Type,first,,strict PublicationView,Publication Tissue,first,,strict PublicationView,Publication Accessibility,first,,all PublicationView,Publication Dataset Alias,first,, +PublicationView,entityId,""","".join",, DatasetView,Dataset Alias,first,aliasColumn,all DatasetView,Component,first,componentColumn, DatasetView,DatasetView_id,""","".join",idColumn,all

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