Merge pull request #4 from mcg1969/bad_env

Handle missing environments

Author: mcg1969

project_inspect/project.py

@@ -58,10 +58,12 @@ def find_used_packages(fpath, project_home, prefixes):
         if language is None:
             return (None, None, None, None)
         preferred = kernel_name_to_prefix(project_home, kspec)
-        if preferred is not None:
-            prefixes = [preferred]
-        else:
+        if preferred is None:
             logger.warning("Unexpected kernel name: {}\n  file: {}".format(kspec, fpath))
+        elif not isdir(join(preferred, 'conda-meta')):
+            logger.warning("Missing or invalid kernel environment: {}\n  file: {}\n  directory: {}".format(kspec, fpath, preferred))
+        else:
+            prefixes = [preferred]
     else:
         return (None, None, None, None)
     package_name = './' + basename(fpath)

test_node/user1/Portfolio/bad_nb.ipynb

@@ -42,9 +42,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 2",
+   "display_name": "Python [conda env:Portfolio-default2]",
    "language": "python",
-   "name": "python2"
+   "name": "conda-env-Portfolio-default2-py"
   },
   "language_info": {
    "codemirror_mode": {
@@ -56,7 +56,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython2",
-   "version": "2.7.16"
+   "version": "2.7.15"
   }
  },
  "nbformat": 4,

tests/darwin/all_version.csv

@@ -24,7 +24,8 @@ bkcharts,0.2,2,2,2,0,0
 blas,1.0,2,4,4,2,0
 bleach,3.1.0,2,4,6,0,0
 blosc,1.15.0,2,2,2,0,0
-bokeh,1.0.4,2,3,3,1,1
+bokeh,1.0.4,2,2,2,0,0
+bokeh,1.1.0,1,1,1,1,1
 boto,2.49.0,2,2,2,0,0
 bottleneck,1.2.1,2,2,2,0,0
 bwidget,1.9.11,2,4,4,4,0
@@ -107,7 +108,8 @@ itsdangerous,1.1.0,2,2,2,0,0
 jbig,2.1,2,2,2,0,0
 jdcal,1.4,2,2,2,0,0
 jedi,0.13.3,2,3,5,1,0
-jinja2,2.10,2,4,6,2,0
+jinja2,2.10,2,2,2,0,0
+jinja2,2.10.1,2,4,4,2,0
 jpeg,9b,2,4,6,4,0
 jsonschema,3.0.1,2,4,6,0,0
 jupyter,1.0.0,2,3,3,0,0
@@ -216,7 +218,8 @@ pygments,2.3.1,2,4,6,2,0
 pylint,2.3.1,2,2,2,0,0
 pyodbc,4.0.26,2,2,2,0,0
 pyopenssl,19.0.0,2,2,2,0,0
-pyparsing,2.3.1,2,3,3,1,0
+pyparsing,2.3.1,2,2,2,0,0
+pyparsing,2.4.0,1,1,1,1,0
 pyqt,5.9.2,2,3,3,0,0
 pyrsistent,0.14.11,2,4,6,0,0
 pysocks,1.6.8,2,2,2,0,0
@@ -404,7 +407,8 @@ scikit-learn,0.20.3,2,2,2,0,0
 scipy,1.2.1,2,3,3,1,0
 seaborn,0.9.0,2,2,2,0,0
 send2trash,1.5.0,2,4,6,0,0
-setuptools,40.8.0,2,4,6,6,0
+setuptools,40.8.0,2,2,2,2,0
+setuptools,41.0.0,2,4,4,4,0
 simplegeneric,0.8.1,2,3,3,1,0
 singledispatch,3.4.0.3,2,3,3,1,0
 sip,4.19.8,2,3,3,0,0

tests/darwin/environment_version.csv

@@ -8,7 +8,7 @@ user1,Portfolio,default,backports.shutil_get_terminal_size,1.0.0,1,0
 user1,Portfolio,default,backports_abc,0.5,1,0
 user1,Portfolio,default,blas,1.0,1,0
 user1,Portfolio,default,bleach,3.1.0,0,0
-user1,Portfolio,default,bokeh,1.0.4,1,1
+user1,Portfolio,default,bokeh,1.1.0,1,1
 user1,Portfolio,default,bwidget,1.9.11,1,0
 user1,Portfolio,default,bzip2,1.0.6,1,0
 user1,Portfolio,default,ca-certificates,2019.1.23,1,0
@@ -50,7 +50,7 @@ user1,Portfolio,default,ipykernel,4.10.0,1,1
 user1,Portfolio,default,ipython,5.8.0,1,0
 user1,Portfolio,default,ipython_genutils,0.2.0,1,0
 user1,Portfolio,default,ipywidgets,7.4.2,0,0
-user1,Portfolio,default,jinja2,2.10,1,0
+user1,Portfolio,default,jinja2,2.10.1,1,0
 user1,Portfolio,default,jpeg,9b,1,0
 user1,Portfolio,default,jsonschema,3.0.1,0,0
 user1,Portfolio,default,jupyter,1.0.0,0,0
@@ -108,7 +108,7 @@ user1,Portfolio,default,prompt_toolkit,1.0.15,1,0
 user1,Portfolio,default,psutil,5.6.1,1,1
 user1,Portfolio,default,ptyprocess,0.6.0,1,0
 user1,Portfolio,default,pygments,2.3.1,1,0
-user1,Portfolio,default,pyparsing,2.3.1,1,0
+user1,Portfolio,default,pyparsing,2.4.0,1,0
 user1,Portfolio,default,pyqt,5.9.2,0,0
 user1,Portfolio,default,pyrsistent,0.14.11,0,0
 user1,Portfolio,default,python,2.7.16,1,1
@@ -268,7 +268,7 @@ user1,Portfolio,default,ruamel.yaml,0.15.91,1,1
 user1,Portfolio,default,scandir,1.10.0,1,0
 user1,Portfolio,default,scipy,1.2.1,1,0
 user1,Portfolio,default,send2trash,1.5.0,0,0
-user1,Portfolio,default,setuptools,40.8.0,1,0
+user1,Portfolio,default,setuptools,41.0.0,1,0
 user1,Portfolio,default,simplegeneric,0.8.1,1,0
 user1,Portfolio,default,singledispatch,3.4.0.3,1,0
 user1,Portfolio,default,sip,4.19.8,0,0
@@ -328,7 +328,7 @@ user1,ScriptsOnly,default,ipykernel,5.1.0,0,0
 user1,ScriptsOnly,default,ipython,7.4.0,0,0
 user1,ScriptsOnly,default,ipython_genutils,0.2.0,0,0
 user1,ScriptsOnly,default,jedi,0.13.3,0,0
-user1,ScriptsOnly,default,jinja2,2.10,0,0
+user1,ScriptsOnly,default,jinja2,2.10.1,0,0
 user1,ScriptsOnly,default,jpeg,9b,1,0
 user1,ScriptsOnly,default,jsonschema,3.0.1,0,0
 user1,ScriptsOnly,default,jupyter_client,5.2.4,0,0
@@ -522,7 +522,7 @@ user1,ScriptsOnly,default,r-yaml,2.2.0,0,0
 user1,ScriptsOnly,default,r-zoo,1.8_3,0,0
 user1,ScriptsOnly,default,readline,7.0,1,0
 user1,ScriptsOnly,default,send2trash,1.5.0,0,0
-user1,ScriptsOnly,default,setuptools,40.8.0,1,0
+user1,ScriptsOnly,default,setuptools,41.0.0,1,0
 user1,ScriptsOnly,default,six,1.12.0,0,0
 user1,ScriptsOnly,default,sqlite,3.27.2,1,0
 user1,ScriptsOnly,default,terminado,0.8.1,0,0
@@ -830,7 +830,7 @@ user2,ProjectInspector,default,ipykernel,5.1.0,1,1
 user2,ProjectInspector,default,ipython,7.4.0,1,1
 user2,ProjectInspector,default,ipython_genutils,0.2.0,1,0
 user2,ProjectInspector,default,jedi,0.13.3,1,0
-user2,ProjectInspector,default,jinja2,2.10,1,0
+user2,ProjectInspector,default,jinja2,2.10.1,1,0
 user2,ProjectInspector,default,jpeg,9b,1,0
 user2,ProjectInspector,default,jsonschema,3.0.1,0,0
 user2,ProjectInspector,default,jupyter_client,5.2.4,1,0
@@ -927,7 +927,7 @@ user2,ProjectInspector,default,r-uuid,0.1_2,1,0
 user2,ProjectInspector,default,readline,7.0,1,0
 user2,ProjectInspector,default,rpy2,2.9.4,1,1
 user2,ProjectInspector,default,send2trash,1.5.0,0,0
-user2,ProjectInspector,default,setuptools,40.8.0,1,0
+user2,ProjectInspector,default,setuptools,41.0.0,1,0
 user2,ProjectInspector,default,six,1.12.0,1,0
 user2,ProjectInspector,default,sqlite,3.27.2,1,0
 user2,ProjectInspector,default,terminado,0.8.1,0,0
@@ -978,7 +978,7 @@ user2,ScriptsOnly,default,ipykernel,5.1.0,0,0
 user2,ScriptsOnly,default,ipython,7.4.0,0,0
 user2,ScriptsOnly,default,ipython_genutils,0.2.0,0,0
 user2,ScriptsOnly,default,jedi,0.13.3,0,0
-user2,ScriptsOnly,default,jinja2,2.10,0,0
+user2,ScriptsOnly,default,jinja2,2.10.1,0,0
 user2,ScriptsOnly,default,jpeg,9b,1,0
 user2,ScriptsOnly,default,jsonschema,3.0.1,0,0
 user2,ScriptsOnly,default,jupyter_client,5.2.4,0,0
@@ -1172,7 +1172,7 @@ user2,ScriptsOnly,default,r-yaml,2.2.0,0,0
 user2,ScriptsOnly,default,r-zoo,1.8_3,0,0
 user2,ScriptsOnly,default,readline,7.0,1,0
 user2,ScriptsOnly,default,send2trash,1.5.0,0,0
-user2,ScriptsOnly,default,setuptools,40.8.0,1,0
+user2,ScriptsOnly,default,setuptools,41.0.0,1,0
 user2,ScriptsOnly,default,six,1.12.0,0,0
 user2,ScriptsOnly,default,sqlite,3.27.2,1,0
 user2,ScriptsOnly,default,terminado,0.8.1,0,0

tests/darwin/node_version.csv

@@ -24,7 +24,8 @@ bkcharts,0.2,2,2,2,0,0
 blas,1.0,2,4,4,2,0
 bleach,3.1.0,2,4,6,0,0
 blosc,1.15.0,2,2,2,0,0
-bokeh,1.0.4,2,3,3,1,1
+bokeh,1.0.4,2,2,2,0,0
+bokeh,1.1.0,1,1,1,1,1
 boto,2.49.0,2,2,2,0,0
 bottleneck,1.2.1,2,2,2,0,0
 bwidget,1.9.11,2,4,4,4,0
@@ -107,7 +108,8 @@ itsdangerous,1.1.0,2,2,2,0,0
 jbig,2.1,2,2,2,0,0
 jdcal,1.4,2,2,2,0,0
 jedi,0.13.3,2,3,5,1,0
-jinja2,2.10,2,4,6,2,0
+jinja2,2.10,2,2,2,0,0
+jinja2,2.10.1,2,4,4,2,0
 jpeg,9b,2,4,6,4,0
 jsonschema,3.0.1,2,4,6,0,0
 jupyter,1.0.0,2,3,3,0,0
@@ -216,7 +218,8 @@ pygments,2.3.1,2,4,6,2,0
 pylint,2.3.1,2,2,2,0,0
 pyodbc,4.0.26,2,2,2,0,0
 pyopenssl,19.0.0,2,2,2,0,0
-pyparsing,2.3.1,2,3,3,1,0
+pyparsing,2.3.1,2,2,2,0,0
+pyparsing,2.4.0,1,1,1,1,0
 pyqt,5.9.2,2,3,3,0,0
 pyrsistent,0.14.11,2,4,6,0,0
 pysocks,1.6.8,2,2,2,0,0
@@ -404,7 +407,8 @@ scikit-learn,0.20.3,2,2,2,0,0
 scipy,1.2.1,2,3,3,1,0
 seaborn,0.9.0,2,2,2,0,0
 send2trash,1.5.0,2,4,6,0,0
-setuptools,40.8.0,2,4,6,6,0
+setuptools,40.8.0,2,2,2,2,0
+setuptools,41.0.0,2,4,4,4,0
 simplegeneric,0.8.1,2,3,3,1,0
 singledispatch,3.4.0.3,2,3,3,1,0
 sip,4.19.8,2,3,3,0,0

tests/darwin/owner_version.csv

@@ -24,7 +24,8 @@ user1,bkcharts,0.2,1,1,0,0
 user1,blas,1.0,2,2,1,0
 user1,bleach,3.1.0,2,3,0,0
 user1,blosc,1.15.0,1,1,0,0
-user1,bokeh,1.0.4,2,2,1,1
+user1,bokeh,1.0.4,1,1,0,0
+user1,bokeh,1.1.0,1,1,1,1
 user1,boto,2.49.0,1,1,0,0
 user1,bottleneck,1.2.1,1,1,0,0
 user1,bwidget,1.9.11,2,2,2,0
@@ -107,7 +108,8 @@ user1,itsdangerous,1.1.0,1,1,0,0
 user1,jbig,2.1,1,1,0,0
 user1,jdcal,1.4,1,1,0,0
 user1,jedi,0.13.3,1,2,0,0
-user1,jinja2,2.10,2,3,1,0
+user1,jinja2,2.10,1,1,0,0
+user1,jinja2,2.10.1,2,2,1,0
 user1,jpeg,9b,2,3,2,0
 user1,jsonschema,3.0.1,2,3,0,0
 user1,jupyter,1.0.0,2,2,0,0
@@ -216,7 +218,8 @@ user1,pygments,2.3.1,2,3,1,0
 user1,pylint,2.3.1,1,1,0,0
 user1,pyodbc,4.0.26,1,1,0,0
 user1,pyopenssl,19.0.0,1,1,0,0
-user1,pyparsing,2.3.1,2,2,1,0
+user1,pyparsing,2.3.1,1,1,0,0
+user1,pyparsing,2.4.0,1,1,1,0
 user1,pyqt,5.9.2,2,2,0,0
 user1,pyrsistent,0.14.11,2,3,0,0
 user1,pysocks,1.6.8,1,1,0,0
@@ -397,7 +400,8 @@ user1,scikit-learn,0.20.3,1,1,0,0
 user1,scipy,1.2.1,2,2,1,0
 user1,seaborn,0.9.0,1,1,0,0
 user1,send2trash,1.5.0,2,3,0,0
-user1,setuptools,40.8.0,2,3,3,0
+user1,setuptools,40.8.0,1,1,1,0
+user1,setuptools,41.0.0,2,2,2,0
 user1,simplegeneric,0.8.1,2,2,1,0
 user1,singledispatch,3.4.0.3,2,2,1,0
 user1,sip,4.19.8,2,2,0,0
@@ -547,7 +551,8 @@ user2,itsdangerous,1.1.0,1,1,0,0
 user2,jbig,2.1,1,1,0,0
 user2,jdcal,1.4,1,1,0,0
 user2,jedi,0.13.3,2,3,1,0
-user2,jinja2,2.10,2,3,1,0
+user2,jinja2,2.10,1,1,0,0
+user2,jinja2,2.10.1,2,2,1,0
 user2,jpeg,9b,2,3,2,0
 user2,jsonschema,3.0.1,2,3,0,0
 user2,jupyter,1.0.0,1,1,0,0
@@ -836,7 +841,8 @@ user2,scikit-learn,0.20.3,1,1,0,0
 user2,scipy,1.2.1,1,1,0,0
 user2,seaborn,0.9.0,1,1,0,0
 user2,send2trash,1.5.0,2,3,0,0
-user2,setuptools,40.8.0,2,3,3,0
+user2,setuptools,40.8.0,1,1,1,0
+user2,setuptools,41.0.0,2,2,2,0
 user2,simplegeneric,0.8.1,1,1,0,0
 user2,singledispatch,3.4.0.3,1,1,0,0
 user2,sip,4.19.8,1,1,0,0

tests/darwin/project_version.csv

@@ -8,7 +8,7 @@ user1,Portfolio,backports.shutil_get_terminal_size,1.0.0,1,1,0
 user1,Portfolio,backports_abc,0.5,1,1,0
 user1,Portfolio,blas,1.0,1,1,0
 user1,Portfolio,bleach,3.1.0,1,0,0
-user1,Portfolio,bokeh,1.0.4,1,1,1
+user1,Portfolio,bokeh,1.1.0,1,1,1
 user1,Portfolio,bwidget,1.9.11,1,1,0
 user1,Portfolio,bzip2,1.0.6,1,1,0
 user1,Portfolio,ca-certificates,2019.1.23,1,1,0
@@ -50,7 +50,7 @@ user1,Portfolio,ipykernel,4.10.0,1,1,1
 user1,Portfolio,ipython,5.8.0,1,1,0
 user1,Portfolio,ipython_genutils,0.2.0,1,1,0
 user1,Portfolio,ipywidgets,7.4.2,1,0,0
-user1,Portfolio,jinja2,2.10,1,1,0
+user1,Portfolio,jinja2,2.10.1,1,1,0
 user1,Portfolio,jpeg,9b,1,1,0
 user1,Portfolio,jsonschema,3.0.1,1,0,0
 user1,Portfolio,jupyter,1.0.0,1,0,0
@@ -108,7 +108,7 @@ user1,Portfolio,prompt_toolkit,1.0.15,1,1,0
 user1,Portfolio,psutil,5.6.1,1,1,1
 user1,Portfolio,ptyprocess,0.6.0,1,1,0
 user1,Portfolio,pygments,2.3.1,1,1,0
-user1,Portfolio,pyparsing,2.3.1,1,1,0
+user1,Portfolio,pyparsing,2.4.0,1,1,0
 user1,Portfolio,pyqt,5.9.2,1,0,0
 user1,Portfolio,pyrsistent,0.14.11,1,0,0
 user1,Portfolio,python,2.7.16,1,1,1
@@ -268,7 +268,7 @@ user1,Portfolio,ruamel.yaml,0.15.91,1,1,1
 user1,Portfolio,scandir,1.10.0,1,1,0
 user1,Portfolio,scipy,1.2.1,1,1,0
 user1,Portfolio,send2trash,1.5.0,1,0,0
-user1,Portfolio,setuptools,40.8.0,1,1,0
+user1,Portfolio,setuptools,41.0.0,1,1,0
 user1,Portfolio,simplegeneric,0.8.1,1,1,0
 user1,Portfolio,singledispatch,3.4.0.3,1,1,0
 user1,Portfolio,sip,4.19.8,1,0,0
@@ -390,7 +390,8 @@ user1,ScriptsOnly,itsdangerous,1.1.0,1,0,0
 user1,ScriptsOnly,jbig,2.1,1,0,0
 user1,ScriptsOnly,jdcal,1.4,1,0,0
 user1,ScriptsOnly,jedi,0.13.3,2,0,0
-user1,ScriptsOnly,jinja2,2.10,2,0,0
+user1,ScriptsOnly,jinja2,2.10,1,0,0
+user1,ScriptsOnly,jinja2,2.10.1,1,0,0
 user1,ScriptsOnly,jpeg,9b,2,1,0
 user1,ScriptsOnly,jsonschema,3.0.1,2,0,0
 user1,ScriptsOnly,jupyter,1.0.0,1,0,0
@@ -671,7 +672,8 @@ user1,ScriptsOnly,scikit-learn,0.20.3,1,0,0
 user1,ScriptsOnly,scipy,1.2.1,1,0,0
 user1,ScriptsOnly,seaborn,0.9.0,1,0,0
 user1,ScriptsOnly,send2trash,1.5.0,2,0,0
-user1,ScriptsOnly,setuptools,40.8.0,2,2,0
+user1,ScriptsOnly,setuptools,40.8.0,1,1,0
+user1,ScriptsOnly,setuptools,41.0.0,1,1,0
 user1,ScriptsOnly,simplegeneric,0.8.1,1,0,0
 user1,ScriptsOnly,singledispatch,3.4.0.3,1,0,0
 user1,ScriptsOnly,sip,4.19.8,1,0,0
@@ -756,7 +758,7 @@ user2,ProjectInspector,ipykernel,5.1.0,1,1,1
 user2,ProjectInspector,ipython,7.4.0,1,1,1
 user2,ProjectInspector,ipython_genutils,0.2.0,1,1,0
 user2,ProjectInspector,jedi,0.13.3,1,1,0
-user2,ProjectInspector,jinja2,2.10,1,1,0
+user2,ProjectInspector,jinja2,2.10.1,1,1,0
 user2,ProjectInspector,jpeg,9b,1,1,0
 user2,ProjectInspector,jsonschema,3.0.1,1,0,0
 user2,ProjectInspector,jupyter_client,5.2.4,1,1,0
@@ -853,7 +855,7 @@ user2,ProjectInspector,r-uuid,0.1_2,1,1,0
 user2,ProjectInspector,readline,7.0,1,1,0
 user2,ProjectInspector,rpy2,2.9.4,1,1,1
 user2,ProjectInspector,send2trash,1.5.0,1,0,0
-user2,ProjectInspector,setuptools,40.8.0,1,1,0
+user2,ProjectInspector,setuptools,41.0.0,1,1,0
 user2,ProjectInspector,six,1.12.0,1,1,0
 user2,ProjectInspector,sqlite,3.27.2,1,1,0
 user2,ProjectInspector,terminado,0.8.1,1,0,0
@@ -966,7 +968,8 @@ user2,ScriptsOnly,itsdangerous,1.1.0,1,0,0
 user2,ScriptsOnly,jbig,2.1,1,0,0
 user2,ScriptsOnly,jdcal,1.4,1,0,0
 user2,ScriptsOnly,jedi,0.13.3,2,0,0
-user2,ScriptsOnly,jinja2,2.10,2,0,0
+user2,ScriptsOnly,jinja2,2.10,1,0,0
+user2,ScriptsOnly,jinja2,2.10.1,1,0,0
 user2,ScriptsOnly,jpeg,9b,2,1,0
 user2,ScriptsOnly,jsonschema,3.0.1,2,0,0
 user2,ScriptsOnly,jupyter,1.0.0,1,0,0
@@ -1247,7 +1250,8 @@ user2,ScriptsOnly,scikit-learn,0.20.3,1,0,0
 user2,ScriptsOnly,scipy,1.2.1,1,0,0
 user2,ScriptsOnly,seaborn,0.9.0,1,0,0
 user2,ScriptsOnly,send2trash,1.5.0,2,0,0
-user2,ScriptsOnly,setuptools,40.8.0,2,2,0
+user2,ScriptsOnly,setuptools,40.8.0,1,1,0
+user2,ScriptsOnly,setuptools,41.0.0,1,1,0
 user2,ScriptsOnly,simplegeneric,0.8.1,1,0,0
 user2,ScriptsOnly,singledispatch,3.4.0.3,1,0,0
 user2,ScriptsOnly,sip,4.19.8,1,0,0