Fix usage of htslib vcf_parse(): don't end lines with \n

noporpoise · noporpoise · commit 86b4ffe64521 · 2016-03-20T21:12:33.000Z
diff --git a/libs/htslib b/libs/htslib
@@ -1 +1 @@
-Subproject commit cad00ea01b5c3e22fa5804c28ff355a39bc84ea2
+Subproject commit fc93dfc1f9e0e701bccba69838bcbb21ef1d1328
diff --git a/src/basic/aligned_call.c b/src/basic/aligned_call.c
@@ -134,8 +134,6 @@ static void print_vcf_entry(size_t vcf_pos, int8_t prev_base, int8_t next_base,
     strbuf_append_char(sbuf, gts[i] ? '1' : '.');
   }
 
-  strbuf_append_char(sbuf, '\n');
-
   // fprintf(stderr, " prev_base:%i next_base:%i info:%s\n", prev_base, next_base, call->info.b);
   // fprintf(stderr, "%s [%zu vs %zu]\n", sbuf->b, sbuf->end, strlen(sbuf->b));
 

Original file line number	Diff line number	Diff line change
`@@ -134,8 +134,6 @@ static void print_vcf_entry(size_t vcf_pos, int8_t prev_base, int8_t next_base,`
`134`	`134`	`strbuf_append_char(sbuf, gts[i] ? '1' : '.');`
`135`	`135`	`}`
`136`	`136`
`137`		`- strbuf_append_char(sbuf, '\n');`
`138`		`-`
`139`	`137`	`// fprintf(stderr, " prev_base:%i next_base:%i info:%s\n", prev_base, next_base, call->info.b);`
`140`	`138`	`// fprintf(stderr, "%s [%zu vs %zu]\n", sbuf->b, sbuf->end, strlen(sbuf->b));`
`141`	`139`