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ont_fungal_barcoding_env.yml
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name: ont_fungal_barcoding_env
channels:
- nanoporetech
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.12=h4ab18f5_0
- archspec=0.2.5=pyhd8ed1ab_0
- aws-c-auth=0.7.31=he1a10d6_2
- aws-c-cal=0.7.4=hae4d56a_2
- aws-c-common=0.9.29=hb9d3cd8_0
- aws-c-compression=0.2.19=h2bff981_2
- aws-c-event-stream=0.4.3=h19b0707_4
- aws-c-http=0.8.10=h14a7884_2
- aws-c-io=0.14.19=hc9e6898_1
- aws-c-mqtt=0.10.7=hb8d5873_2
- aws-c-s3=0.6.7=h666547d_0
- aws-c-sdkutils=0.1.19=h2bff981_4
- aws-checksums=0.1.20=h2bff981_1
- aws-crt-cpp=0.28.3=hbe26082_8
- aws-sdk-cpp=1.11.407=h25d6d5c_1
- azure-core-cpp=1.13.0=h935415a_0
- azure-identity-cpp=1.8.0=hd126650_2
- azure-storage-blobs-cpp=12.12.0=hd2e3451_0
- azure-storage-common-cpp=12.7.0=h10ac4d7_1
- azure-storage-files-datalake-cpp=12.11.0=h325d260_1
- bcftools=1.21=h3a4d415_1
- binutils_impl_linux-64=2.43=h4bf12b8_4
- biopython=1.85=py311h9ecbd09_1
- blast=2.16.0=h66d330f_5
- boltons=24.0.0=pyhd8ed1ab_1
- brotli-python=1.1.0=py311hfdbb021_2
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.34.4=hb9d3cd8_0
- ca-certificates=2025.1.31=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.4=h3394656_0
- certifi=2025.1.31=pyhd8ed1ab_0
- cffi=1.17.1=py311hf29c0ef_0
- charset-normalizer=3.4.1=pyhd8ed1ab_0
- chopper=0.9.2=hcdda2d0_0
- clang=20.1.1=default_h9e3a008_0
- clang-20=20.1.1=default_hb5137d0_0
- colorama=0.4.6=pyhd8ed1ab_1
- conda=25.3.1=py311h38be061_1
- conda-libmamba-solver=25.3.0=pyhd8ed1ab_0
- conda-package-handling=2.4.0=pyh7900ff3_2
- conda-package-streaming=0.11.0=pyhd8ed1ab_1
- conda-tree=1.1.1=pyhff2d567_0
- coreutils=9.5=hd590300_0
- cpp-expected=1.1.0=hf52228f_0
- cpython=3.11.11=py311hd8ed1ab_2
- curl=8.12.1=h332b0f4_0
- distro=1.9.0=pyhd8ed1ab_1
- entrez-direct=22.4=he881be0_0
- et_xmlfile=2.0.0=pyhd8ed1ab_1
- expat=2.6.4=h5888daf_0
- filelock=3.18.0=pyhd8ed1ab_0
- filtlong=0.2.1=hdcf5f25_4
- fmt=11.1.4=h07f6e7f_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.15.0=h7e30c49_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.13.3=h48d6fc4_0
- frozendict=2.4.6=py311h9ecbd09_0
- fsspec=2025.3.0=pyhd8ed1ab_0
- gflags=2.2.2=h5888daf_1005
- giflib=5.2.2=hd590300_0
- glog=0.7.1=hbabe93e_0
- gmp=6.3.0=hac33072_2
- gmpy2=2.1.5=py311h0f6cedb_3
- graphite2=1.3.13=h59595ed_1003
- grpcio=1.62.2=py311ha6695c7_0
- gsl=2.7=he838d99_0
- h2=4.2.0=pyhd8ed1ab_0
- h5py=3.13.0=nompi_py311hb639ac4_100
- harfbuzz=9.0.0=hda332d3_1
- hdf5=1.14.3=nompi_h2d575fe_109
- hmmer=3.4=h503566f_3
- hpack=4.1.0=pyhd8ed1ab_0
- htslib=1.21=h566b1c6_1
- hyperframe=6.1.0=pyhd8ed1ab_0
- icu=75.1=he02047a_0
- idna=3.10=pyhd8ed1ab_1
- intervaltree=3.1.0=pyhd8ed1ab_1
- itsx=1.1.3=hdfd78af_1
- jinja2=3.1.6=pyhd8ed1ab_0
- jsonpatch=1.33=pyhd8ed1ab_1
- jsonpointer=3.0.0=py311h38be061_1
- kaleido-core=0.2.1=h3644ca4_0
- kernel-headers_linux-64=3.10.0=he073ed8_18
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.3=h659f571_0
- lcms2=2.17=h717163a_0
- ld_impl_linux-64=2.43=h712a8e2_4
- lerc=4.0.0=h27087fc_0
- libabseil=20240116.2=cxx17_he02047a_1
- libaec=1.1.3=h59595ed_0
- libarchive=3.7.7=hadbb8c3_0
- libarrow=17.0.0=had3b6fe_16_cpu
- libarrow-acero=17.0.0=h5888daf_16_cpu
- libarrow-dataset=17.0.0=h5888daf_16_cpu
- libarrow-substrait=17.0.0=hf54134d_16_cpu
- libasprintf=0.23.1=h8e693c7_0
- libblas=3.9.0=31_h59b9bed_openblas
- libbrotlicommon=1.1.0=hb9d3cd8_2
- libbrotlidec=1.1.0=hb9d3cd8_2
- libbrotlienc=1.1.0=hb9d3cd8_2
- libcblas=3.9.0=31_he106b2a_openblas
- libclang-cpp20.1=20.1.1=default_hb5137d0_0
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h4637d8d_4
- libcurl=8.12.1=h332b0f4_0
- libdeflate=1.22=hb9d3cd8_0
- libedit=3.1.20250104=pl5321h7949ede_0
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.6.4=h5888daf_0
- libffi=3.4.6=h2dba641_0
- libgcc=14.2.0=h767d61c_2
- libgcc-devel_linux-64=14.2.0=h9c4974d_102
- libgcc-ng=14.2.0=h69a702a_2
- libgettextpo=0.23.1=h5888daf_0
- libgfortran=14.2.0=h69a702a_2
- libgfortran5=14.2.0=hf1ad2bd_2
- libglib=2.84.1=h2ff4ddf_0
- libgomp=14.2.0=h767d61c_2
- libgoogle-cloud=2.29.0=h435de7b_0
- libgoogle-cloud-storage=2.29.0=h0121fbd_0
- libgrpc=1.62.2=h15f2491_0
- libiconv=1.18=h4ce23a2_1
- libidn2=2.3.8=ha4ef2c3_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=31_h7ac8fdf_openblas
- libllvm20=20.1.1=ha7bfdaf_0
- liblzma=5.6.4=hb9d3cd8_0
- liblzma-devel=5.6.4=hb9d3cd8_0
- libmamba=2.1.0=h430c389_0
- libmambapy=2.1.0=py311h952910f_0
- libnghttp2=1.64.0=h161d5f1_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.29=pthreads_h94d23a6_0
- libparquet=17.0.0=h39682fd_16_cpu
- libpng=1.6.47=h943b412_0
- libprotobuf=4.25.3=hd5b35b9_1
- libre2-11=2023.09.01=h5a48ba9_2
- libsolv=0.7.30=h3509ff9_0
- libsqlite=3.49.1=hee588c1_2
- libssh2=1.11.1=hf672d98_0
- libstdcxx=14.2.0=h8f9b012_2
- libstdcxx-ng=14.2.0=h4852527_2
- libthrift=0.20.0=h0e7cc3e_1
- libtiff=4.7.0=hc4654cb_2
- libtorch=2.3.1=cpu_generic_h970db74_0
- libunistring=0.9.10=h7f98852_0
- libutf8proc=2.8.0=hf23e847_1
- libuuid=2.38.1=h0b41bf4_0
- libuv=1.50.0=hb9d3cd8_0
- libwebp-base=1.5.0=h851e524_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.13.6=h8d12d68_0
- libzlib=1.3.1=hb9d3cd8_2
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=hd590300_1001
- mappy=2.28=py311h384fd50_3
- markupsafe=3.0.2=py311h2dc5d0c_1
- mathjax=2.7.7=ha770c72_3
- medaka=2.0.1=py311hfd2b166_0
- menuinst=2.2.0=py311h38be061_0
- minimap2=2.28=h9bf148f_0
- mpc=1.3.1=h24ddda3_1
- mpfr=4.2.1=h90cbb55_3
- mpmath=1.3.0=pyhd8ed1ab_1
- nanoget=1.19.3=pyhdfd78af_0
- nanoplot=1.44.1=pyhdfd78af_0
- narwhals=1.31.0=pyhd8ed1ab_0
- ncbi-vdb=3.2.1=h9948957_0
- ncurses=6.5=h2d0b736_3
- networkx=3.4.2=pyh267e887_2
- nextflow=24.10.5=h2a3209d_1
- nlohmann_json=3.11.3=he02047a_1
- nomkl=1.0=h5ca1d4c_0
- nspr=4.36=h5888daf_0
- nss=3.108=h159eef7_0
- numpy=1.26.4=py311h64a7726_0
- ont-fast5-api=4.1.3=pyhdfd78af_0
- openjdk=22.0.1=h8651b0f_1
- openpyxl=3.1.5=py311h50c5138_1
- openssl=3.5.0=h7b32b05_0
- orc=2.0.2=h669347b_0
- packaging=24.2=pyhd8ed1ab_2
- pandas=2.2.3=py311h7db5c69_1
- parasail-python=1.3.4=py311hc84137b_3
- pcre2=10.44=hba22ea6_2
- perl=5.32.1=7_hd590300_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321hbf60520_1
- perl-compress-raw-zlib=2.202=pl5321hadc24fc_0
- perl-encode=3.21=pl5321hb9d3cd8_1
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321h503566f_5
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_1
- perl-json-xs=4.03=pl5321h9948957_4
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h7b50bb2_5
- perl-parent=0.243=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321hb9d3cd8_2
- perl-scalar-list-utils=1.68=pl5321hb9d3cd8_1
- perl-storable=3.15=pl5321hb9d3cd8_2
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pip=25.0.1=pyh8b19718_0
- pixman=0.44.2=h29eaf8c_0
- platformdirs=4.3.7=pyh29332c3_0
- plotly=6.0.1=pyhd8ed1ab_0
- pluggy=1.5.0=pyhd8ed1ab_1
- progressbar33=2.4=pyhd8ed1ab_1
- pthread-stubs=0.4=hb9d3cd8_1002
- pyabpoa=1.5.3=py311h384fd50_1
- pyarrow=17.0.0=py311hbd00459_2
- pyarrow-core=17.0.0=py311h4854187_2_cpu
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.6=py311h9ecbd09_2
- pycparser=2.22=pyh29332c3_1
- pysam=0.23.0=py311hb456a96_0
- pysocks=1.7.1=pyha55dd90_7
- pyspoa=0.2.1=py311h2de2dd3_4
- python=3.11.11=h9e4cc4f_2_cpython
- python-dateutil=2.9.0.post0=pyhff2d567_1
- python-edlib=1.3.9.post1=py311he264feb_2
- python-kaleido=0.2.1=pyhd8ed1ab_0
- python-tzdata=2025.2=pyhd8ed1ab_0
- python_abi=3.11=5_cp311
- pytorch=2.3.1=cpu_generic_py311h8ca351a_0
- pytz=2024.1=pyhd8ed1ab_0
- racon=1.5.0=h077b44d_6
- re2=2023.09.01=h7f4b329_2
- readline=8.2=h8c095d6_2
- reproc=14.2.5.post0=hb9d3cd8_0
- reproc-cpp=14.2.5.post0=h5888daf_0
- requests=2.32.3=pyhd8ed1ab_1
- rpsbproc=0.5.0=hd6d6fdc_2
- ruamel.yaml=0.18.10=py311h9ecbd09_0
- ruamel.yaml.clib=0.2.8=py311h9ecbd09_1
- s2n=1.5.5=h3931f03_0
- samtools=1.21=h96c455f_1
- scipy=1.15.2=py311h8f841c2_0
- seqkit=2.10.0=h9ee0642_0
- setuptools=75.8.2=pyhff2d567_0
- simdjson=3.12.3=h84d6215_0
- six=1.17.0=pyhd8ed1ab_0
- sleef=3.8=h1b44611_0
- snappy=1.2.1=h8bd8927_1
- sortedcontainers=2.4.0=pyhd8ed1ab_1
- spdlog=1.15.2=h10b92b3_0
- sqlite=3.49.1=h9eae976_2
- sympy=1.13.3=pyh2585a3b_105
- sysroot_linux-64=2.17=h0157908_18
- tar=1.34=hb2e2bae_1
- tk=8.6.13=noxft_h4845f30_101
- tqdm=4.67.1=pyhd8ed1ab_1
- tree=2.2.1=hb9d3cd8_0
- truststore=0.10.1=pyh29332c3_0
- typing_extensions=4.12.2=pyha770c72_1
- tzdata=2025b=h78e105d_0
- urllib3=2.3.0=pyhd8ed1ab_0
- vsearch=2.30.0=hd6d6fdc_0
- wget=1.21.4=hda4d442_0
- wheel=0.45.1=pyhd8ed1ab_1
- wurlitzer=3.1.1=pyhd8ed1ab_1
- xorg-libice=1.1.2=hb9d3cd8_0
- xorg-libsm=1.2.6=he73a12e_0
- xorg-libx11=1.8.12=h4f16b4b_0
- xorg-libxau=1.0.12=hb9d3cd8_0
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xorg-libxext=1.3.6=hb9d3cd8_0
- xorg-libxfixes=6.0.1=hb9d3cd8_0
- xorg-libxi=1.8.2=hb9d3cd8_0
- xorg-libxrender=0.9.12=hb9d3cd8_0
- xorg-libxt=1.3.1=hb9d3cd8_0
- xorg-libxtst=1.2.5=hb9d3cd8_3
- xz=5.6.4=hbcc6ac9_0
- xz-gpl-tools=5.6.4=hbcc6ac9_0
- xz-tools=5.6.4=hb9d3cd8_0
- yaml-cpp=0.8.0=h59595ed_0
- zlib=1.3.1=hb9d3cd8_2
- zstandard=0.23.0=py311h9ecbd09_1
- zstd=1.5.7=hb8e6e7a_2