diff --git a/.dockerignore b/.dockerignore index c48a8939..dc12e83f 100644 --- a/.dockerignore +++ b/.dockerignore @@ -1,3 +1,4 @@ +# Tell Docker to _exclude_ these directories from the build context. .env* !.env.example !.env.test @@ -7,3 +8,6 @@ deployment .pytest_cache build dist +/.venv +/.git +/demo/metadata_migration/notebooks \ No newline at end of file diff --git a/.github/workflows/build-and-release-to-spin.yml b/.github/workflows/build-and-release-to-spin.yml index 9ae97b8d..beba2619 100644 --- a/.github/workflows/build-and-release-to-spin.yml +++ b/.github/workflows/build-and-release-to-spin.yml @@ -11,7 +11,7 @@ on: - 'Makefile' - '**.Dockerfile' - '**.py' - - 'requirements/main.txt' + - 'poetry.lock' env: # We don't want to do certain steps if this is running in a fork diff --git a/.github/workflows/mkdocs.yml b/.github/workflows/mkdocs.yml index dab02ceb..d1292887 100644 --- a/.github/workflows/mkdocs.yml +++ b/.github/workflows/mkdocs.yml @@ -18,6 +18,8 @@ jobs: with: python-version: 3.x - run: pip install git+https://${GH_TOKEN}@github.com/squidfunk/mkdocs-material-insiders.git + # TODO: Note that the versions of these packages that `pip` installs may differ + # from the versions listed in `poetry.lock`. Was that intentional? - run: pip install mkdocs-mermaid2-plugin - run: pip install mkdocs-jupyter - run: mkdocs gh-deploy --force diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml index 483c664a..3ebf68b7 100644 --- a/.github/workflows/python-app.yml +++ b/.github/workflows/python-app.yml @@ -11,14 +11,14 @@ on: - 'Makefile' - '**.Dockerfile' - '**.py' - - 'requirements/main.txt' + - 'poetry.lock' pull_request: paths: - '.github/workflows/python-app.yml' - 'Makefile' - '**.Dockerfile' - '**.py' - - 'requirements/main.txt' + - 'poetry.lock' # Allow developers to trigger this workflow manually via the "Actions" page on GitHub. # Reference: https://docs.github.com/en/actions/managing-workflow-runs-and-deployments/managing-workflow-runs/manually-running-a-workflow workflow_dispatch: { } diff --git a/Makefile b/Makefile index f3779003..32fc9663 100644 --- a/Makefile +++ b/Makefile @@ -1,56 +1,42 @@ +# Use Poetry to install Python dependencies. init: - pip install -r requirements/main.txt - pip install -r requirements/dev.txt - pip install --editable .[dev] - -# Updates Python dependencies based upon the contents of the `requirements/main.in` and `requirements/dev.in` files. -# -# To omit the `--upgrade` option (included by default) when running `pip-compile`: -# ``` -# $ make update-deps UPDATE_DEPS_MAIN_UPGRADE_OPT='' UPDATE_DEPS_DEV_UPGRADE_OPT='' -# ``` -UPDATE_DEPS_MAIN_UPGRADE_OPT ?= --upgrade -UPDATE_DEPS_DEV_UPGRADE_OPT ?= --upgrade -update-deps: - # --allow-unsafe pins packages considered unsafe: distribute, pip, setuptools. - pip install --upgrade pip-tools pip setuptools - pip-compile $(UPDATE_DEPS_MAIN_UPGRADE_OPT) --build-isolation \ - --allow-unsafe --resolver=backtracking --strip-extras \ - --output-file requirements/main.txt \ - requirements/main.in - pip-compile --allow-unsafe $(UPDATE_DEPS_DEV_UPGRADE_OPT) --build-isolation \ - --allow-unsafe --resolver=backtracking --strip-extras \ - --output-file requirements/dev.txt \ - requirements/dev.in - -update: update-deps init + poetry install +# TODO: Document this target. up-dev: docker compose up --build --force-recreate --detach --remove-orphans +# TODO: Document this target. dev-reset-db: docker compose \ exec mongo /bin/bash -c "./app_tests/mongorestore-nmdc-testdb.sh" +# TODO: Document this target. up-test: docker compose --file docker-compose.test.yml \ up --build --force-recreate --detach --remove-orphans +# TODO: Document this target. test-build: docker compose --file docker-compose.test.yml build test +# TODO: Document this target. test-dbinit: docker compose --file docker-compose.test.yml \ exec mongo /bin/bash -c "/mongorestore-nmdc-testdb.sh" +# TODO: Document this target. test-run: docker compose --file docker-compose.test.yml run test +# TODO: Document this target. test: test-build test-run +# TODO: Document this target. black: black nmdc_runtime +# TODO: Document this target. lint: # Python syntax errors or undefined names flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --extend-ignore=F722 @@ -58,38 +44,49 @@ lint: flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 \ --statistics --extend-exclude="./build/" --extend-ignore=F722 -PIP_PINNED_FLAKE8 := $(shell grep 'flake8==' requirements/dev.txt) -PIP_PINNED_BLACK := $(shell grep 'black==' requirements/dev.txt) +# Define variables containing Python package version numbers read from the Poetry lock file. +POETRY_LOCKED_FLAKE8_VERSION := $(shell grep -A 1 'name = "flake8"' poetry.lock | sed -ne 's/^version = "\(.*\)"/\1/p') +POETRY_LOCKED_BLACK_VERSION := $(shell grep -A 1 'name = "black"' poetry.lock | sed -ne 's/^version = "\(.*\)"/\1/p') +# Install lint and black via pip, without installing other dependencies. init-lint-and-black: - pip install $(PIP_PINNED_FLAKE8) - pip install $(PIP_PINNED_BLACK) + pip install flake8==$(POETRY_LOCKED_FLAKE8_VERSION) + pip install black==$(POETRY_LOCKED_BLACK_VERSION) +# TODO: Document this target. down-dev: docker compose down +# TODO: Document this target. down-test: docker compose --file docker-compose.test.yml down --volumes +# TODO: Document this target. follow-fastapi: docker compose logs fastapi -f +# TODO: Document this target. fastapi-deploy-spin: rancher kubectl rollout restart deployment/runtime-fastapi --namespace=nmdc-dev +# TODO: Document this target. dagster-deploy-spin: rancher kubectl rollout restart deployment/dagit --namespace=nmdc-dev rancher kubectl rollout restart deployment/dagster-daemon --namespace=nmdc-dev +# TODO: Document this target. publish: invoke publish +# TODO: Document this target. docs-dev: mkdocs serve -a localhost:8080 +# TODO: Document this target. nersc-sshproxy: bash ./nersc-sshproxy.sh -u ${NERSC_USERNAME} # https://docs.nersc.gov/connect/mfa/#sshproxy +# TODO: Document this target. nersc-mongo-tunnels: ssh -L27072:mongo-loadbalancer.nmdc.production.svc.spin.nersc.org:27017 \ -L28082:mongo-loadbalancer.nmdc-dev.development.svc.spin.nersc.org:27017 \ @@ -97,6 +94,7 @@ nersc-mongo-tunnels: -o ServerAliveInterval=60 \ ${NERSC_USERNAME}@dtn02.nersc.gov +# TODO: Document this target. mongorestore-nmdc-db: mkdir -p /tmp/remote-mongodump/nmdc # SSH into the remote server, stream the dump directory as a gzipped tar archive, and extract it locally. @@ -106,8 +104,9 @@ mongorestore-nmdc-db: mongorestore -v -h localhost:27018 -u admin -p root --authenticationDatabase=admin \ --drop --nsInclude='nmdc.*' --dir /tmp/remote-mongodump +# TODO: Document this target. quick-blade: python -c "from nmdc_runtime.api.core.idgen import generate_id; print(f'nmdc:nt-11-{generate_id(length=8, split_every=0)}')" -.PHONY: init update-deps update up-dev down-dev follow-fastapi \ +.PHONY: init up-dev down-dev follow-fastapi \ publish docs diff --git a/docker-compose.yml b/docker-compose.yml index 47048c1f..72b31576 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -65,7 +65,7 @@ services: container_name: fastapi ports: - "8000:8000" - command: ["uvicorn", "nmdc_runtime.api.main:app", "--reload", "--host", "0.0.0.0", "--port", "8000"] + command: ["poetry", "run", "python", "-m", "uvicorn", "nmdc_runtime.api.main:app", "--reload", "--host", "0.0.0.0", "--port", "8000"] env_file: - .env depends_on: diff --git a/docs/admin.md b/docs/admin.md index dae7a9e2..a20d9738 100644 --- a/docs/admin.md +++ b/docs/admin.md @@ -96,6 +96,6 @@ If you need to delete objects copy it to `nmdc_deleted` database under the corre ## nmdc-schema update -1. Set the desired version of `nmdc-schema` in `requirements/main.in`. -2. `make update-deps`. +1. Set the desired version of `nmdc-schema` in `pyproject.toml`. +2. Run `$ poetry install`. 3. commit and push, start PR and seek approval + merge to `main`, which will trigger GH actions to deploy. diff --git a/nmdc_runtime/dagster.Dockerfile b/nmdc_runtime/dagster.Dockerfile index 125cb1b9..372b1350 100644 --- a/nmdc_runtime/dagster.Dockerfile +++ b/nmdc_runtime/dagster.Dockerfile @@ -16,15 +16,18 @@ RUN export DEBIAN_FRONTEND=noninteractive && \ apt-get -y clean && \ rm -rf /var/lib/apt/lists/* +# Install Poetry. +RUN pip install poetry -# Install requirements WORKDIR /opt/dagster/lib -COPY requirements/main.txt requirements.txt -RUN pip install --no-cache-dir -r requirements.txt + +# Use Poetry to install production Python dependencies. +COPY ./pyproject.toml /opt/dagster/lib/pyproject.toml +COPY ./poetry.lock /opt/dagster/lib/poetry.lock +RUN poetry install --without dev # Add repository code COPY . . -RUN pip install --no-cache-dir --editable . # Set $DAGSTER_HOME and copy dagster instance and workspace YAML there ENV DAGSTER_HOME=/opt/dagster/dagster_home/ diff --git a/nmdc_runtime/fastapi.Dockerfile b/nmdc_runtime/fastapi.Dockerfile index 5c8a336a..e4c40b68 100644 --- a/nmdc_runtime/fastapi.Dockerfile +++ b/nmdc_runtime/fastapi.Dockerfile @@ -16,14 +16,17 @@ RUN export DEBIAN_FRONTEND=noninteractive && \ apt-get -y clean && \ rm -rf /var/lib/apt/lists/* -WORKDIR /code +# Install Poetry. +RUN pip install poetry -COPY ./requirements/main.txt /code/requirements.txt +WORKDIR /code -RUN pip install --no-cache-dir -r /code/requirements.txt +# Use Poetry to install production Python dependencies. +COPY ./pyproject.toml /code/pyproject.toml +COPY ./poetry.lock /code/poetry.lock +RUN poetry install --without dev # Add repository code COPY . /code -RUN pip install --no-cache-dir --editable . -CMD ["uvicorn", "nmdc_runtime.api.main:app", "--proxy-headers", "--host", "0.0.0.0", "--port", "8000"] \ No newline at end of file +CMD ["python", "-m", "poetry", "run", "uvicorn", "nmdc_runtime.api.main:app", "--proxy-headers", "--host", "0.0.0.0", "--port", "8000"] \ No newline at end of file diff --git a/nmdc_runtime/site/entrypoint-daemon.sh b/nmdc_runtime/site/entrypoint-daemon.sh index 0ea58479..c135c7bb 100755 --- a/nmdc_runtime/site/entrypoint-daemon.sh +++ b/nmdc_runtime/site/entrypoint-daemon.sh @@ -23,4 +23,8 @@ file_env() { file_env "MONGO_PASSWORD" file_env "DAGSTER_POSTGRES_PASSWORD" -exec dagster-daemon run +# Note: We specify a directory to Poetry so it knows where to find our `pyproject.toml` file. +# Reference: https://python-poetry.org/docs/cli/#global-options +# +exec poetry run --directory /opt/dagster/lib \ + dagster-daemon run diff --git a/nmdc_runtime/site/entrypoint-dagit.sh b/nmdc_runtime/site/entrypoint-dagit.sh index 7dcb0673..1f8d581c 100755 --- a/nmdc_runtime/site/entrypoint-dagit.sh +++ b/nmdc_runtime/site/entrypoint-dagit.sh @@ -23,4 +23,10 @@ file_env() { file_env "MONGO_PASSWORD" file_env "DAGSTER_POSTGRES_PASSWORD" -exec dagit -h 0.0.0.0 -p 3000 -w workspace.yaml +# Note: We specify a directory to Poetry so it knows where to find our `pyproject.toml` file. +# Reference: https://python-poetry.org/docs/cli/#global-options +# +# TODO: The `dagit` CLI command is deprecated. Use `dagster-webserver` instead. +# +exec poetry run --directory /opt/dagster/lib \ + dagit -h 0.0.0.0 -p 3000 -w workspace.yaml diff --git a/nmdc_runtime/site/workspace.yaml b/nmdc_runtime/site/workspace.yaml index 5da09ab9..0b544a6b 100644 --- a/nmdc_runtime/site/workspace.yaml +++ b/nmdc_runtime/site/workspace.yaml @@ -1,22 +1,31 @@ load_from: - python_package: + # Note: The directory to which the following "working_directory" + # is _relative_, is `/opt/dagster/dagster_home`. + working_directory: ../lib package_name: nmdc_runtime.site.repository attribute: repo - python_package: + working_directory: ../lib package_name: nmdc_runtime.site.repository attribute: translation - python_package: + working_directory: ../lib package_name: nmdc_runtime.site.repository attribute: test_translation - python_package: + working_directory: ../lib package_name: nmdc_runtime.site.repository attribute: biosample_submission_ingest - python_package: + working_directory: ../lib package_name: nmdc_runtime.site.repository attribute: biosample_export # - python_package: +# working_directory: ../lib # package_name: nmdc_runtime.site.repository # attribute: validation # - python_package: +# working_directory: ../lib # package_name: nmdc_runtime.site.repository # attribute: test_validation \ No newline at end of file diff --git a/nmdc_runtime/test.Dockerfile b/nmdc_runtime/test.Dockerfile index 1bb2464a..706410ba 100644 --- a/nmdc_runtime/test.Dockerfile +++ b/nmdc_runtime/test.Dockerfile @@ -16,18 +16,20 @@ RUN export DEBIAN_FRONTEND=noninteractive && \ apt-get -y clean && \ rm -rf /var/lib/apt/lists/* -# Install requirements, incl. for tests +# Install Poetry. +RUN pip install poetry + WORKDIR /code -COPY ./requirements/dev.txt /code/requirements.dev.txt -RUN pip install --no-cache-dir -r /code/requirements.dev.txt -COPY ./requirements/main.txt /code/requirements.txt -RUN pip install --no-cache-dir -r /code/requirements.txt +# Use Poetry to install Python dependencies, including development ones. +COPY ./pyproject.toml /code/pyproject.toml +COPY ./poetry.lock /code/poetry.lock +RUN poetry install --with dev # Add repository code COPY . /code -RUN pip install --no-cache-dir --editable . +# TODO: Add a claim to the sentence below. Example: "Ensure wait-for-it... is executable" ## Ensure wait-for-it RUN chmod +x wait-for-it.sh @@ -36,8 +38,8 @@ ENV PYTHONFAULTHANDLER=1 # uncomment line below to run all tests -# ENTRYPOINT [ "./wait-for-it.sh", "fastapi:8000" , "--strict" , "--timeout=300" , "--" , "pytest"] +# ENTRYPOINT [ "./wait-for-it.sh", "fastapi:8000" , "--strict" , "--timeout=300" , "--" , "poetry", "run", "pytest"] # uncomment line below to stop after first test failure: # https://docs.pytest.org/en/6.2.x/usage.html#stopping-after-the-first-or-n-failures -ENTRYPOINT [ "./wait-for-it.sh", "fastapi:8000" , "--strict" , "--timeout=300" , "--" , "pytest"] +ENTRYPOINT [ "./wait-for-it.sh", "fastapi:8000" , "--strict" , "--timeout=300" , "--" , "poetry", "run", "pytest"] diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 00000000..697637aa --- /dev/null +++ b/poetry.lock @@ -0,0 +1,7053 @@ +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. + +[[package]] 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a/pyproject.toml b/pyproject.toml new file mode 100644 index 00000000..52329122 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,175 @@ +[tool.poetry] +name = "nmdc-runtime" +version = "2.1.0" +description = "A runtime system for NMDC data management and orchestration" +authors = [ + "Donny Winston ", +] +# Note: The Python Packaging User Guide [1] says we can say `license = {file = "LICENSE"}`, +# but it shows that happening in a `[project]` block, not a `[tool.poetry]` block. +# So, I erred on the side of caution and used `license = "Proprietary"`, +# as shown in the Poetry docs [2]. +# +# References: +# - [1] https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license +# - [2] https://python-poetry.org/docs/pyproject/#license +# +license = "Proprietary" +readme = "README.md" + +# Production dependencies. +# +# Note: This section was initialized by manually entering each package name shown in `requirements/main.in` into the +# prompts shown by `$ poetry init`, and specifying either the latest available version (if no version constraints +# were specified in that file) or specifying the same version constraints as were specified in that file. +[tool.poetry.dependencies] +# Note: This version requirement of "^3.10" was copied from the `setup.py` file used by the application's original +# build system. However, when running `$ poetry install`, Poetry reported a version range conflict between this +# and the `dagster-postgres` package, which was only compatible with Python versions up to `<3.13`. In order to +# accommodate that package, we constrained the maximum Python version here to be `<3.13`. +python = ">=3.10, <3.13" +# TODO: Document why this is a dependency (what we use it for). +base32-lib = "^1.0.2" +# TODO: Document why this is a dependency (what we use it for). +beautifulsoup4 = "^4.12.3" +# TODO: Document why this is a dependency (what we use it for). +beanie = ">=1.16.0" +# TODO: Document why this is a dependency (what we use it for). +boto3 = "^1.35.68" +# TODO: Document why this is a dependency (what we use it for). +click = "^8.1.7" +# TODO: Document why this is a dependency (what we use it for). +dagit = "^1.9.3" +# TODO: Document why this is a dependency (what we use it for). +dagster = "^1.9.3" +# TODO: Document why this is a dependency (what we use it for). +dagster-graphql = "^1.9.3" +# TODO: Document why this is a dependency (what we use it for). +dagster-postgres = "^0.25.3" +# TODO: Document why this is a dependency (what we use it for). +dependency-injector = "^4.43.0" +# TODO: Document why this is a dependency (what we use it for). +dotted-dict = "^1.1.3" +# We use this as our web application framework. +# Docs: https://fastapi.tiangolo.com/ +fastapi = ">=0.104.1" +# TODO: Document why this is a dependency (what we use it for). +fastjsonschema = "^2.20.0" +# TODO: Document why this is a dependency (what we use it for). +fnc = "^0.5.3" +# TODO: Document why this is a dependency (what we use it for). +frozendict = "^2.4.6" +# TODO: Document why this is a dependency (what we use it for). +git-root = "^0.1" +# TODO: Document why this is a dependency (what we use it for). +jq = "^1.8.0" +# TODO: Document why this is a dependency (what we use it for). +jsonasobj2 = "^1.0.4" +# TODO: Why is this a production dependency instead of a development dependency? +jupyter = "^1.1.1" +# TODO: Why is this a production dependency instead of a development dependency? +jupyterlab = "^4.3.1" +# TODO: Document why this is a dependency (what we use it for). +linkml = "^1.8.5" +# TODO: Document why this is a dependency (what we use it for). +linkml-runtime = "^1.8.3" +# TODO: Document why this is a dependency (what we use it for). +lxml = "^5.3.0" +# TODO: Document why this is a dependency (what we use it for). +mkdocs-jupyter = "^0.25.1" +# TODO: Document why this is a dependency (what we use it for). +mkdocs-material = "^9.5.45" +# TODO: Document why this is a dependency (what we use it for). +# Note: The specification for the latest version of this package is (currently) `^1.2.1`. The reason we +# are specifying an older version is that we also depend on `nmdc-schema==11.1.0`, which specifies +# that older version as one of its production dependencies. +# TODO: Inquire with `nmdc-schema` maintainers about addressing their dependence upon the old version of +# this package and about converting it into a development dependency instead. +mkdocs-mermaid2-plugin = ">=0.6.0, <0.7.0" +# We use `motor` as our MongoDB client. It's an asynchronous alternative to `pymongo`. +# Docs: https://motor.readthedocs.io +motor = "^3.6.0" +# We use `nmdc-schema` to interpret the data residing in the MongoDB database. +# Docs: https://microbiomedata.github.io/nmdc-schema/ +nmdc-schema = "==11.1.0" +# TODO: Document why this is a dependency (what we use it for). +openpyxl = "^3.1.5" +# TODO: Document why this is a dependency (what we use it for). +pandas = "^2.2.3" +# TODO: Document why this is a dependency (what we use it for). +passlib = {extras = ["bcrypt"], version = "^1.7.4"} +# TODO: I think the Runtime uses motor instead, and pymongo is only used by experiments within this repo. The database +# migration notebooks do use pymongo, but their dependencies are managed separately from the Runtime's/this. +pymongo = "^4.9.0" +# TODO: Document why this is a dependency (what we use it for). +pydantic = {extras = ["email"], version = ">=1.10.0"} +# TODO: Document why this is a dependency (what we use it for). +python-dotenv = "^1.0.1" +# TODO: Document why this is a dependency (what we use it for). +python-jose = {extras = ["cryptography"], version = "^3.3.0"} +# TODO: Document why this is a dependency (what we use it for). +python-multipart = "^0.0.17" +# TODO: Document why this is a dependency (what we use it for). +PyYAML = "^6.0.2" +# TODO: Document why this is a dependency (what we use it for). +requests = "^2.32.3" +# TODO: Document why this is a dependency (what we use it for). +semver = "^3.0.2" +# TODO: Document why this is a dependency (what we use it for). +setuptools-scm = "^8.1.0" +# TODO: Document why this is a dependency (what we use it for). +tenacity = "^9.0.0" +# TODO: Document why this is a dependency (what we use it for). +toolz = "^1.0.0" +# TODO: Document why this is a dependency (what we use it for). +tqdm = "^4.67.0" +# TODO: Document why this is a dependency (what we use it for). +uvicorn = {extras = ["standard"], version = "^0.32.1"} +# TODO: Document why this is a dependency (what we use it for). +xlrd = "^2.0.1" +# TODO: Document why this is a dependency (what we use it for). +XlsxWriter = "^3.2.0" +# TODO: Document why this is a dependency (what we use it for). +requests-cache = "^1.2.1" + +# Development dependencies. +# +# Note: This section was initialized by manually entering each package name shown in `requirements/dev.in` into the +# prompts shown by `$ poetry init`, and specifying either the latest available version (if no version constraints +# were specified in that file) or specifying the same version constraints as were specified in that file. +[tool.poetry.group.dev.dependencies] +# We use Black to format source code. +# Docs: https://black.readthedocs.io/ +black = "^24.10.0" +# We use coverage to measure how much of our application code our test code exercises. +# Docs: https://coverage.readthedocs.io +coverage = "^7.6.7" +# TODO: Document why this is a dependency (what we use it for). +flake8 = "^7.1.1" +# TODO: Document why this is a dependency (what we use it for). +invoke = "^2.2.0" +# TODO: Is `pip-tools` still required, now that we are using Poetry as our dependency management tool? +pip-tools = "^7.4.1" +# TODO: Is `pip` still required, now that we are using Poetry as our dependency management tool? +pip = "^24.3.1" +# We use pytest as our automated test framework. +# Docs: https://docs.pytest.org/ +pytest = "^8.3.3" +# TODO: Document why this is a dependency (what we use it for). +pytest-asyncio = "^0.24.0" +# TODO: Document why this is a dependency (what we use it for). +pytest-cov = "^6.0.0" +# TODO: Document why this is a dependency (what we use it for). +requests-mock = "^1.12.1" +# TODO: Is `setuptools` still required, now that we are using Poetry as our dependency management tool? +setuptools = "^75.6.0" +# TODO: Is `twine` still required, now that we are using Poetry as our dependency management tool? +twine = "^5.1.1" +# TODO: Document why this is a dependency (what we use it for). +requests-cache = "^1.2.1" +# TODO: Document why this is a dependency (what we use it for). +pytest-mock = "^3.14.0" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/requirements/dev.in b/requirements/dev.in deleted file mode 100644 index 601370de..00000000 --- a/requirements/dev.in +++ /dev/null @@ -1,15 +0,0 @@ --c main.txt -black -coverage -flake8 -invoke -pip-tools -pip -pytest -pytest-asyncio -pytest-cov -requests-mock -setuptools -twine -requests-cache -pytest-mock \ No newline at end of file diff --git a/requirements/dev.txt b/requirements/dev.txt deleted file mode 100644 index 839ef537..00000000 --- a/requirements/dev.txt +++ /dev/null @@ -1,224 +0,0 @@ -# -# This file is autogenerated by pip-compile with Python 3.10 -# by the following command: -# -# pip-compile --allow-unsafe --output-file=requirements/dev.txt --strip-extras requirements/dev.in -# -attrs==24.2.0 - # via - # -c /code/requirements/main.txt - # cattrs - # requests-cache -backports-tarfile==1.2.0 - # via jaraco-context -black==24.10.0 - # via -r requirements/dev.in -build==1.2.2.post1 - # via pip-tools -cattrs==24.1.2 - # via - # -c /code/requirements/main.txt - # requests-cache -certifi==2024.8.30 - # via - # -c /code/requirements/main.txt - # requests -cffi==1.17.1 - # via - # -c /code/requirements/main.txt - # cryptography -charset-normalizer==3.4.0 - # via - # -c /code/requirements/main.txt - # requests -click==8.1.7 - # via - # -c /code/requirements/main.txt - # black - # pip-tools -coverage==7.6.4 - # via - # -r requirements/dev.in - # pytest-cov -cryptography==43.0.3 - # via - # -c /code/requirements/main.txt - # secretstorage -docutils==0.21.2 - # via readme-renderer -exceptiongroup==1.2.2 - # via - # -c /code/requirements/main.txt - # cattrs - # pytest -flake8==7.1.1 - # via -r requirements/dev.in -idna==3.10 - # via - # -c /code/requirements/main.txt - # requests -importlib-metadata==8.5.0 - # via - # keyring - # twine -iniconfig==2.0.0 - # via - # -c /code/requirements/main.txt - # pytest -invoke==2.2.0 - # via -r requirements/dev.in -jaraco-classes==3.4.0 - # via keyring -jaraco-context==6.0.1 - # via keyring -jaraco-functools==4.1.0 - # via keyring -jeepney==0.8.0 - # via - # keyring - # secretstorage -keyring==25.5.0 - # via twine -markdown-it-py==3.0.0 - # via - # -c /code/requirements/main.txt - # rich -mccabe==0.7.0 - # via flake8 -mdurl==0.1.2 - # via - # -c /code/requirements/main.txt - # markdown-it-py -more-itertools==10.5.0 - # via - # jaraco-classes - # jaraco-functools -mypy-extensions==1.0.0 - # via black -nh3==0.2.18 - # via readme-renderer -packaging==24.2 - # via - # -c /code/requirements/main.txt - # black - # build - # pytest -pathspec==0.12.1 - # via - # -c /code/requirements/main.txt - # black -pip-tools==7.4.1 - # via -r requirements/dev.in -pkginfo==1.10.0 - # via twine -platformdirs==4.3.6 - # via - # -c /code/requirements/main.txt - # black - # requests-cache -pluggy==1.5.0 - # via - # -c /code/requirements/main.txt - # pytest -pycodestyle==2.12.1 - # via flake8 -pycparser==2.22 - # via - # -c /code/requirements/main.txt - # cffi -pyflakes==3.2.0 - # via flake8 -pygments==2.18.0 - # via - # -c /code/requirements/main.txt - # readme-renderer - # rich -pyproject-hooks==1.2.0 - # via - # build - # pip-tools -pytest==8.3.3 - # via - # -c /code/requirements/main.txt - # -r requirements/dev.in - # pytest-asyncio - # pytest-cov - # pytest-mock -pytest-asyncio==0.24.0 - # via -r requirements/dev.in -pytest-cov==6.0.0 - # via -r requirements/dev.in -pytest-mock==3.14.0 - # via -r requirements/dev.in -readme-renderer==44.0 - # via twine -requests==2.32.3 - # via - # -c /code/requirements/main.txt - # requests-cache - # requests-mock - # requests-toolbelt - # twine -requests-cache==1.2.1 - # via - # -c /code/requirements/main.txt - # -r requirements/dev.in -requests-mock==1.12.1 - # via -r requirements/dev.in -requests-toolbelt==1.0.0 - # via - # -c /code/requirements/main.txt - # twine -rfc3986==2.0.0 - # via twine -rich==13.9.4 - # via - # -c /code/requirements/main.txt - # twine -secretstorage==3.3.3 - # via keyring -six==1.16.0 - # via - # -c /code/requirements/main.txt - # url-normalize -tomli==2.1.0 - # via - # -c /code/requirements/main.txt - # black - # build - # coverage - # pip-tools - # pytest -twine==5.1.1 - # via -r requirements/dev.in -typing-extensions==4.12.2 - # via - # -c /code/requirements/main.txt - # black - # cattrs - # rich -url-normalize==1.4.3 - # via - # -c /code/requirements/main.txt - # requests-cache -urllib3==2.2.3 - # via - # -c /code/requirements/main.txt - # requests - # requests-cache - # twine -wheel==0.45.0 - # via pip-tools -zipp==3.21.0 - # via importlib-metadata - -# The following packages are considered to be unsafe in a requirements file: -pip==24.3.1 - # via - # -r requirements/dev.in - # pip-tools -setuptools==75.5.0 - # via - # -c /code/requirements/main.txt - # -r requirements/dev.in - # pip-tools diff --git a/requirements/main.in b/requirements/main.in deleted file mode 100644 index dcdc49c5..00000000 --- a/requirements/main.in +++ /dev/null @@ -1,47 +0,0 @@ -base32-lib -beautifulsoup4 -beanie>=1.16.0 -boto3 -click -dagit -dagster -dagster-graphql -dagster-postgres -dependency-injector -dotted-dict -fastapi>=0.104.1 # Pins Swagger UI version to 5.9.0 temporarily to handle a bug crashing it in 5.9.1 -fastjsonschema -fnc -frozendict -git-root -jq -jsonasobj2 -jupyter -jupyterlab -linkml -linkml-runtime -lxml -mkdocs-jupyter -mkdocs-material -mkdocs-mermaid2-plugin -motor -nmdc-schema==11.1.0 -openpyxl -pandas -passlib[bcrypt] -pymongo -pydantic[email]>=1.10.0 -python-dotenv -python-jose[cryptography] -python-multipart -pyyaml -requests -semver -setuptools-scm -tenacity -toolz -tqdm -uvicorn[standard] -xlrd -xlsxwriter -requests-cache diff --git a/requirements/main.txt b/requirements/main.txt deleted file mode 100644 index cecbe3e2..00000000 --- a/requirements/main.txt +++ /dev/null @@ -1,872 +0,0 @@ -# -# This file is autogenerated by pip-compile with Python 3.10 -# by the following command: -# -# pip-compile --allow-unsafe --output-file=requirements/main.txt --strip-extras requirements/main.in -# -alembic==1.14.0 - # via dagster -annotated-types==0.7.0 - # via pydantic -antlr4-python3-runtime==4.9.3 - # via - # linkml - # pyjsg - # pyshexc -anyio==4.6.2.post1 - # via - # gql - # httpx - # jupyter-server - # starlette - # watchfiles -argon2-cffi==23.1.0 - # via jupyter-server -argon2-cffi-bindings==21.2.0 - # via argon2-cffi -arrow==1.3.0 - # via isoduration -asttokens==2.4.1 - # via stack-data -async-lru==2.0.4 - # via jupyterlab -attrs==24.2.0 - # via - # cattrs - # jsonschema - # referencing - # requests-cache -babel==2.16.0 - # via - # jupyterlab-server - # mkdocs-material -backoff==2.2.1 - # via gql -base32-lib==1.0.2 - # via -r requirements/main.in -bcrypt==4.2.0 - # via passlib -beanie==1.27.0 - # via -r requirements/main.in -beautifulsoup4==4.12.3 - # via - # -r requirements/main.in - # mkdocs-mermaid2-plugin - # nbconvert -bleach==6.2.0 - # via nbconvert -boto3==1.35.60 - # via -r requirements/main.in -botocore==1.35.60 - # via - # boto3 - # s3transfer -cattrs==24.1.2 - # via requests-cache -certifi==2024.8.30 - # via - # httpcore - # httpx - # requests -cffi==1.17.1 - # via - # argon2-cffi-bindings - # cryptography -cfgraph==0.2.1 - # via pyshex -chardet==5.2.0 - # via - # pyshex - # pyshexc -charset-normalizer==3.4.0 - # via requests -click==8.1.7 - # via - # -r requirements/main.in - # beanie - # dagster - # dagster-webserver - # json-flattener - # linkml - # linkml-runtime - # mkdocs - # prefixcommons - # uvicorn -colorama==0.4.6 - # via mkdocs-material -coloredlogs==14.0 - # via dagster -comm==0.2.2 - # via - # ipykernel - # ipywidgets -croniter==3.0.4 - # via dagster -cryptography==43.0.3 - # via python-jose -curies==0.9.0 - # via - # linkml-runtime - # prefixmaps -dagit==1.9.1 - # via -r requirements/main.in -dagster==1.9.1 - # via - # -r requirements/main.in - # dagster-graphql - # dagster-postgres - # dagster-webserver -dagster-graphql==1.9.1 - # via - # -r requirements/main.in - # dagster-webserver -dagster-pipes==1.9.1 - # via dagster -dagster-postgres==0.25.1 - # via -r requirements/main.in -dagster-webserver==1.9.1 - # via dagit -debugpy==1.8.8 - # via ipykernel -decorator==5.1.1 - # via ipython -defusedxml==0.7.1 - # via nbconvert -dependency-injector==4.43.0 - # via -r requirements/main.in -deprecated==1.2.14 - # via linkml-runtime -dnspython==2.7.0 - # via - # email-validator - # pymongo -docstring-parser==0.16 - # via dagster -dotted-dict==1.1.3 - # via -r requirements/main.in -ecdsa==0.19.0 - # via python-jose -editorconfig==0.12.4 - # via jsbeautifier -email-validator==2.2.0 - # via pydantic -et-xmlfile==2.0.0 - # via openpyxl -exceptiongroup==1.2.2 - # via - # anyio - # cattrs - # ipython - # pytest -executing==2.1.0 - # via stack-data -fastapi==0.115.5 - # via -r requirements/main.in -fastjsonschema==2.20.0 - # via - # -r requirements/main.in - # nbformat -filelock==3.16.1 - # via dagster -fnc==0.5.3 - # via -r requirements/main.in -fqdn==1.5.1 - # via jsonschema -frozendict==2.4.6 - # via -r requirements/main.in -fsspec==2024.10.0 - # via universal-pathlib -ghp-import==2.1.0 - # via mkdocs -git-root==0.1 - # via -r requirements/main.in -gql==3.5.0 - # via dagster-graphql -graphene==3.4.3 - # via dagster-graphql -graphql-core==3.2.5 - # via - # gql - # graphene - # graphql-relay -graphql-relay==3.2.0 - # via graphene -graphviz==0.20.3 - # via linkml -greenlet==3.1.1 - # via sqlalchemy -grpcio==1.67.1 - # via - # dagster - # grpcio-health-checking -grpcio-health-checking==1.62.3 - # via dagster -h11==0.14.0 - # via - # httpcore - # uvicorn -hbreader==0.9.1 - # via - # jsonasobj2 - # linkml - # linkml-runtime -httpcore==1.0.6 - # via httpx -httptools==0.6.4 - # via uvicorn -httpx==0.27.2 - # via jupyterlab -humanfriendly==10.0 - # via coloredlogs -idna==3.10 - # via - # anyio - # email-validator - # httpx - # jsonschema - # requests - # yarl -iniconfig==2.0.0 - # via pytest -ipykernel==6.29.5 - # via - # jupyter - # jupyter-console - # jupyterlab - # mkdocs-jupyter -ipython==8.29.0 - # via - # ipykernel - # ipywidgets - # jupyter-console -ipywidgets==8.1.5 - # via jupyter -isodate==0.7.2 - # via - # linkml - # rdflib -isoduration==20.11.0 - # via jsonschema -jedi==0.19.2 - # via ipython -jinja2==3.1.4 - # via - # dagster - # jupyter-server - # jupyterlab - # jupyterlab-server - # linkml - # linkml-dataops - # mkdocs - # mkdocs-material - # nbconvert -jmespath==1.0.1 - # via - # boto3 - # botocore -jq==1.8.0 - # via -r requirements/main.in -jsbeautifier==1.15.1 - # via mkdocs-mermaid2-plugin -json-flattener==0.1.9 - # via linkml-runtime -json5==0.9.28 - # via jupyterlab-server -jsonasobj==1.3.1 - # via - # pyjsg - # pyshexc -jsonasobj2==1.0.4 - # via - # -r requirements/main.in - # linkml - # linkml-runtime -jsonpatch==1.33 - # via linkml-dataops -jsonpath-ng==1.7.0 - # via linkml-dataops -jsonpointer==3.0.0 - # via - # jsonpatch - # jsonschema -jsonschema==4.23.0 - # via - # jupyter-events - # jupyterlab-server - # linkml - # linkml-runtime - # nbformat -jsonschema-specifications==2024.10.1 - # via jsonschema -jupyter==1.1.1 - # via -r requirements/main.in -jupyter-client==8.6.3 - # via - # ipykernel - # jupyter-console - # jupyter-server - # nbclient -jupyter-console==6.6.3 - # via jupyter -jupyter-core==5.7.2 - # via - # ipykernel - # jupyter-client - # jupyter-console - # jupyter-server - # jupyterlab - # nbclient - # nbconvert - # nbformat -jupyter-events==0.10.0 - # via jupyter-server -jupyter-lsp==2.2.5 - # via jupyterlab -jupyter-server==2.14.2 - # via - # jupyter-lsp - # jupyterlab - # jupyterlab-server - # notebook - # notebook-shim -jupyter-server-terminals==0.5.3 - # via jupyter-server -jupyterlab==4.2.5 - # via - # -r requirements/main.in - # jupyter - # notebook -jupyterlab-pygments==0.3.0 - # via nbconvert -jupyterlab-server==2.27.3 - # via - # jupyterlab - # notebook -jupyterlab-widgets==3.0.13 - # via ipywidgets -jupytext==1.16.4 - # via mkdocs-jupyter -lazy-model==0.2.0 - # via beanie -linkml==1.8.5 - # via - # -r requirements/main.in - # nmdc-schema -linkml-dataops==0.1.0 - # via linkml -linkml-runtime==1.8.3 - # via - # -r requirements/main.in - # linkml - # linkml-dataops - # nmdc-schema -lxml==5.3.0 - # via -r requirements/main.in -mako==1.3.6 - # via alembic -markdown==3.7 - # via - # mkdocs - # mkdocs-material - # pymdown-extensions -markdown-it-py==3.0.0 - # via - # jupytext - # mdit-py-plugins - # rich -markupsafe==3.0.2 - # via - # jinja2 - # mako - # mkdocs - # nbconvert -matplotlib-inline==0.1.7 - # via - # ipykernel - # ipython -mdit-py-plugins==0.4.2 - # via jupytext -mdurl==0.1.2 - # via markdown-it-py -mergedeep==1.3.4 - # via - # mkdocs - # mkdocs-get-deps -mistune==3.0.2 - # via nbconvert -mkdocs==1.6.1 - # via - # mkdocs-jupyter - # mkdocs-material - # mkdocs-mermaid2-plugin - # mkdocs-redirects - # nmdc-schema -mkdocs-get-deps==0.2.0 - # via mkdocs -mkdocs-jupyter==0.25.1 - # via -r requirements/main.in -mkdocs-material==9.5.44 - # via - # -r requirements/main.in - # mkdocs-jupyter - # mkdocs-mermaid2-plugin -mkdocs-material-extensions==1.3.1 - # via mkdocs-material -mkdocs-mermaid2-plugin==0.6.0 - # via - # -r requirements/main.in - # nmdc-schema -mkdocs-redirects==1.2.2 - # via nmdc-schema -motor==3.6.0 - # via - # -r requirements/main.in - # beanie -multidict==6.1.0 - # via yarl -nbclient==0.10.0 - # via nbconvert -nbconvert==7.16.4 - # via - # jupyter - # jupyter-server - # mkdocs-jupyter -nbformat==5.10.4 - # via - # jupyter-server - # jupytext - # nbclient - # nbconvert -nest-asyncio==1.6.0 - # via ipykernel -nmdc-schema==11.1.0 - # via -r requirements/main.in -notebook==7.2.2 - # via jupyter -notebook-shim==0.2.4 - # via - # jupyterlab - # notebook -numpy==2.1.3 - # via pandas -openpyxl==3.1.5 - # via - # -r requirements/main.in - # linkml -overrides==7.7.0 - # via jupyter-server -packaging==24.2 - # via - # dagster - # ipykernel - # jupyter-server - # jupyterlab - # jupyterlab-server - # jupytext - # mkdocs - # nbconvert - # pytest - # setuptools-scm -paginate==0.5.7 - # via mkdocs-material -pandas==2.2.3 - # via -r requirements/main.in -pandocfilters==1.5.1 - # via nbconvert -parse==1.20.2 - # via linkml -parso==0.8.4 - # via jedi -passlib==1.7.4 - # via -r requirements/main.in -pathspec==0.12.1 - # via mkdocs -pexpect==4.9.0 - # via ipython -platformdirs==4.3.6 - # via - # jupyter-core - # mkdocs-get-deps - # requests-cache -pluggy==1.5.0 - # via pytest -ply==3.11 - # via jsonpath-ng -prefixcommons==0.1.12 - # via - # linkml - # linkml-runtime -prefixmaps==0.2.6 - # via - # linkml - # linkml-runtime -prometheus-client==0.21.0 - # via jupyter-server -prompt-toolkit==3.0.48 - # via - # ipython - # jupyter-console -propcache==0.2.0 - # via yarl -protobuf==4.25.5 - # via - # dagster - # grpcio-health-checking -psutil==6.1.0 - # via ipykernel -psycopg2-binary==2.9.10 - # via dagster-postgres -ptyprocess==0.7.0 - # via - # pexpect - # terminado -pure-eval==0.2.3 - # via stack-data -pyasn1==0.6.1 - # via - # python-jose - # rsa -pycparser==2.22 - # via cffi -pydantic==2.9.2 - # via - # -r requirements/main.in - # beanie - # curies - # dagster - # fastapi - # lazy-model - # linkml - # linkml-runtime -pydantic-core==2.23.4 - # via pydantic -pygments==2.18.0 - # via - # ipython - # jupyter-console - # mkdocs-jupyter - # mkdocs-material - # nbconvert - # rich -pyjsg==0.11.10 - # via - # linkml - # pyshexc - # shexjsg -pymdown-extensions==10.12 - # via - # mkdocs-material - # mkdocs-mermaid2-plugin -pymongo==4.9.2 - # via - # -r requirements/main.in - # motor - # nmdc-schema -pyparsing==3.2.0 - # via rdflib -pyshex==0.8.1 - # via linkml -pyshexc==0.9.1 - # via - # linkml - # pyshex -pytest==8.3.3 - # via pytest-logging -pytest-logging==2015.11.4 - # via prefixcommons -python-dateutil==2.9.0.post0 - # via - # arrow - # botocore - # croniter - # ghp-import - # graphene - # jupyter-client - # linkml - # pandas -python-dotenv==1.0.1 - # via - # -r requirements/main.in - # dagster - # uvicorn -python-jose==3.3.0 - # via -r requirements/main.in -python-json-logger==2.0.7 - # via jupyter-events -python-multipart==0.0.17 - # via -r requirements/main.in -pytrie==0.4.0 - # via curies -pytz==2024.2 - # via - # croniter - # dagster - # pandas -pyyaml==6.0.2 - # via - # -r requirements/main.in - # dagster - # json-flattener - # jupyter-events - # jupytext - # linkml - # linkml-runtime - # mkdocs - # mkdocs-get-deps - # mkdocs-mermaid2-plugin - # prefixcommons - # prefixmaps - # pymdown-extensions - # pyyaml-env-tag - # uvicorn -pyyaml-env-tag==0.1 - # via mkdocs -pyzmq==26.2.0 - # via - # ipykernel - # jupyter-client - # jupyter-console - # jupyter-server -rdflib==7.1.1 - # via - # cfgraph - # linkml - # linkml-runtime - # rdflib-jsonld - # rdflib-shim - # sparqlslurper - # sparqlwrapper -rdflib-jsonld==0.6.1 - # via rdflib-shim -rdflib-shim==1.0.3 - # via - # pyshex - # pyshexc - # sparqlslurper -referencing==0.35.1 - # via - # jsonschema - # jsonschema-specifications - # jupyter-events -regex==2024.11.6 - # via mkdocs-material -requests==2.32.3 - # via - # -r requirements/main.in - # dagster - # dagster-graphql - # gql - # jupyterlab-server - # linkml - # linkml-runtime - # mkdocs-material - # mkdocs-mermaid2-plugin - # prefixcommons - # pyshex - # requests-cache - # requests-toolbelt -requests-cache==1.2.1 - # via -r requirements/main.in -requests-toolbelt==1.0.0 - # via gql -rfc3339-validator==0.1.4 - # via - # jsonschema - # jupyter-events -rfc3986-validator==0.1.1 - # via - # jsonschema - # jupyter-events -rfc3987==1.3.8 - # via jsonschema -rich==13.9.4 - # via dagster -rpds-py==0.21.0 - # via - # jsonschema - # referencing -rsa==4.9 - # via python-jose -ruamel-yaml==0.18.6 - # via - # linkml-dataops - # nmdc-schema -ruamel-yaml-clib==0.2.12 - # via ruamel-yaml -s3transfer==0.10.3 - # via boto3 -semver==3.0.2 - # via -r requirements/main.in -send2trash==1.8.3 - # via jupyter-server -setuptools-scm==8.1.0 - # via -r requirements/main.in -shexjsg==0.8.2 - # via - # pyshex - # pyshexc -six==1.16.0 - # via - # asttokens - # base32-lib - # dependency-injector - # ecdsa - # jsbeautifier - # python-dateutil - # rfc3339-validator - # url-normalize -sniffio==1.3.1 - # via - # anyio - # httpx -sortedcontainers==2.4.0 - # via pytrie -soupsieve==2.6 - # via beautifulsoup4 -sparqlslurper==0.5.1 - # via pyshex -sparqlwrapper==2.0.0 - # via - # pyshex - # sparqlslurper -sqlalchemy==2.0.36 - # via - # alembic - # dagster - # linkml -stack-data==0.6.3 - # via ipython -starlette==0.41.2 - # via - # dagster-graphql - # dagster-webserver - # fastapi -structlog==24.4.0 - # via dagster -tabulate==0.9.0 - # via dagster -tenacity==9.0.0 - # via -r requirements/main.in -terminado==0.18.1 - # via - # jupyter-server - # jupyter-server-terminals -tinycss2==1.4.0 - # via nbconvert -toml==0.10.2 - # via beanie -tomli==2.1.0 - # via - # dagster - # jupyterlab - # jupytext - # pytest - # setuptools-scm -toolz==1.0.0 - # via -r requirements/main.in -toposort==1.10 - # via dagster -tornado==6.4.1 - # via - # ipykernel - # jupyter-client - # jupyter-server - # jupyterlab - # notebook - # terminado -tqdm==4.67.0 - # via - # -r requirements/main.in - # dagster -traitlets==5.14.3 - # via - # comm - # ipykernel - # ipython - # ipywidgets - # jupyter-client - # jupyter-console - # jupyter-core - # jupyter-events - # jupyter-server - # jupyterlab - # matplotlib-inline - # nbclient - # nbconvert - # nbformat -types-python-dateutil==2.9.0.20241003 - # via arrow -typing-extensions==4.12.2 - # via - # alembic - # anyio - # async-lru - # beanie - # cattrs - # dagster - # fastapi - # graphene - # ipython - # multidict - # pydantic - # pydantic-core - # rich - # sqlalchemy - # uvicorn -tzdata==2024.2 - # via pandas -universal-pathlib==0.2.5 - # via dagster -uri-template==1.3.0 - # via jsonschema -url-normalize==1.4.3 - # via requests-cache -urllib3==2.2.3 - # via - # botocore - # pyshex - # requests - # requests-cache -uvicorn==0.32.0 - # via - # -r requirements/main.in - # dagster-webserver -uvloop==0.21.0 - # via uvicorn -watchdog==5.0.3 - # via - # dagster - # linkml - # mkdocs -watchfiles==0.24.0 - # via uvicorn -wcwidth==0.2.13 - # via prompt-toolkit -webcolors==24.11.1 - # via jsonschema -webencodings==0.5.1 - # via - # bleach - # tinycss2 -websocket-client==1.8.0 - # via jupyter-server -websockets==14.1 - # via uvicorn -widgetsnbextension==4.0.13 - # via ipywidgets -wrapt==1.16.0 - # via deprecated -xlrd==2.0.1 - # via -r requirements/main.in -xlsxwriter==3.2.0 - # via -r requirements/main.in -yarl==1.17.1 - # via gql - -# The following packages are considered to be unsafe in a requirements file: -setuptools==75.5.0 - # via - # dagster - # jupyterlab - # mkdocs-mermaid2-plugin - # setuptools-scm diff --git a/setup.py b/setup.py index 5da4e771..78778a3a 100644 --- a/setup.py +++ b/setup.py @@ -22,6 +22,7 @@ classifiers=[ "Development Status :: 3 - Alpha", "Programming Language :: Python :: 3", + # TODO: This says "Apache", but the `LICENSE` file in the repository doesn't say "Apache" anywhere in it. "License :: OSI Approved :: Apache Software License", ], python_requires=">=3.10",