Merge pull request #64 from microsoft/update-dependencies

remove torch-scatter torch-geometric dependencies

Author: sarahalamdari

environment.yml

@@ -8,8 +8,6 @@ dependencies:
   - pandas
   - numpy
   - python-lmdb
-  - conda-forge::pytorch_geometric
-  - conda-forge::pytorch_scatter
   - pip
   - pip:
       - git+https://github.com/microsoft/protein-sequence-models.git

requirements.txt

@@ -12,6 +12,4 @@ requests
 scikit-learn
 seaborn
 sequence-models
-torch_geometric
-torch-scatter
 tqdm

setup.py

@@ -5,7 +5,7 @@
 
 setuptools.setup(
     name="evodiff",
-    version="1.1.1",
+    version="1.1.2",
     description="Python package for generation of protein sequences and evolutionary alignments via discrete diffusion models",
     long_description=long_description,
     long_description_content_type="text/markdown",
@@ -29,8 +29,6 @@
         "scikit-learn",
         "seaborn",
         "sequence-models",
-        "torch_geometric",
-        "torch-scatter",
         "tqdm"
     ],
     python_requires='>=3.9.0',