update_truth_data.yml

name: Update Truth Data
on:
  workflow_dispatch:
  schedule:
    - cron: '0 9 * * 1'

jobs:
  update_target-data:
    runs-on: ubuntu-latest
    steps:
    - name: Checkout repo
      uses: actions/checkout@v3
      with:
        fetch-depth: 1
        sparse-checkout: |
              .github
              src
              auxiliary-data/data-locations
              auxiliary-data/target-data_archive
              target-data

    - uses: r-lib/actions/setup-r@v2

    - name: Install system dependencies
      run: sudo apt-get install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libarchive-dev libudunits2-dev libgdal-dev libfontconfig1-dev

    - name: Cache R packages
      id: cache
      if: runner.os != 'Windows'
      uses: actions/cache@v3
      with:
        path: ${{ env.R_LIBS_USER }}
        key: ${{ runner.os }}-${{ hashFiles('.github/requirements.txt') }}-1

    - name: Install dependencies
      if: steps.cache.outputs.cache-hit != 'true'
      run: |
        R -e 'install.packages(c("dplyr", "tidyr", "stringr", "httr", "MMWRweek", "jsonlite", "purrr"))'
      env:
        GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}


    - name: Generate truth csv files
      run: |
        R -e 'source("src/target-data.R")'

    - name: Commit
      run: |
        git config user.name Github-Actions
        git config user.email "<>"
        if [ -n "$(git status --porcelain)" ]; then
          git add .
          git commit -m "Target data update $(date)"
          git push
          echo "Target data updated";
        else
          echo "no updates";
        fi