Merge branch 'develop' into add-10x-presets

Author: mizraelson

LICENSE

@@ -1,4 +1,4 @@
-Copyright (c) 2014-2024, MiLaboratories Inc. All Rights Reserved
+Copyright (c) 2014-2026, MiLaboratories Inc. All Rights Reserved
 
 By exercising the Licensed Rights, the User accepts and agrees to be bound by
 the terms and conditions of this international public end-user license
@@ -119,6 +119,13 @@ Academic User requires a Commercial License. Any such collaboration undertaken
 without first obtaining a Commercial License constitutes a breach of this
 License. 
 
+(4) Fair Usage Policy for Academic Users. The royalty-free Academic License is
+intended for standard individual research and classroom instruction. “Academic Use”
+under this license is subject to a Fair Usage Limit of 1,000 samples/records per year.
+Any use exceeding this limit, or any use involving “High-Throughput” processing,
+automated massive-scale screening, or institutional-wide core facility deployments,
+requires a High-Volume Academic License or a Commercial License.
+
 
 Section 4 - Disclaimer of Warranties and Limitation of Liability.
 

build.gradle.kts

@@ -134,6 +134,7 @@ val toObfuscate: Configuration by configurations.creating {
 val obfuscationLibs: Configuration by configurations.creating
 
 
+
 val mixcrAlgoVersion = "4.7.0-63-develop"
 // may be blank (will be inherited from mixcr-algo)
 val milibVersion = ""

pl-pkg/package.json

@@ -82,7 +82,8 @@
           },
           "cmd": [
             "java",
-            "-Xms{int(((((system.ram.mib*91/100)+(system.ram.mib-2000)-abs((system.ram.mib*91/100)-(system.ram.mib-2000)))/2)+(system.ram.mib*50/100)+abs((((system.ram.mib*91/100)+(system.ram.mib-2000)-abs((system.ram.mib*91/100)-(system.ram.mib-2000)))/2)-(system.ram.mib*50/100)))/2)}m",
+            "-Xmx{int(max(min(system.ram.mib*85/100,system.ram.mib-3500),system.ram.mib*50/100))}m",
+            "-Xms{int(system.ram.mib*50/100)}m",
             "-XX:MaxHeapFreeRatio=10",
             "-XX:MinHeapFreeRatio=2",
             "-jar",
@@ -96,7 +97,8 @@
           },
           "cmd": [
             "java",
-            "-Xms{int(((((system.ram.mib*91/100)+(system.ram.mib-2000)-abs((system.ram.mib*91/100)-(system.ram.mib-2000)))/2)+(system.ram.mib*50/100)+abs((((system.ram.mib*91/100)+(system.ram.mib-2000)-abs((system.ram.mib*91/100)-(system.ram.mib-2000)))/2)-(system.ram.mib*50/100)))/2)}m",
+            "-Xmx{int(max(min(system.ram.mib*85/100,system.ram.mib-3500),system.ram.mib*50/100))}m",
+            "-Xms{int(system.ram.mib*50/100)}m",
             "-XX:MaxHeapFreeRatio=10",
             "-XX:MinHeapFreeRatio=2",
             "-jar",