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56 | 56 | <h1 class="title is-1 publication-title">A multimodal foundation model for protein phenotypes</h1> |
57 | 57 | <div class="is-size-5 publication-authors"> |
58 | 58 | <!-- Paper authors --> |
59 | | - <span class="author-block"> |
60 | | - <a href="https://owencqueen.github.io/" target="_blank">Owen Queen</a><sup>1,*,+</sup>, |
61 | | - </span> |
62 | | - <span class="author-block"> |
63 | | - <a href="https://www.linkedin.com/in/yepeng-huang" target="_blank">Yepeng Huang</a><sup>1,*</sup>, |
64 | | - </span> |
65 | | - <span class="author-block"> |
66 | | - <a href="https://www.linkedin.com/in/robert-calef/" target="_blank">Robert Calef</a><sup>1,2,*</sup>, |
67 | | - </span> |
68 | | - <span class="author-block"> |
69 | | - <a href="https://valegiunchiglia.github.io/personal_website/" target="_blank">Valentina Giunchiglia</a><sup>1,3,4</sup>, |
70 | | - </span> |
71 | | - <span class="author-block"> |
72 | | - <a href="#" target="_blank">Tianlong Chen</a><sup>1,2</sup>, |
73 | | - </span> |
74 | | - <span class="author-block"> |
75 | | - <a href="#" target="_blank">George Dasoulas</a><sup>1</sup>, |
76 | | - </span> |
77 | | - <span class="author-block"> |
78 | | - <a href="#" target="_blank">LeAnn Tai</a><sup>2</sup>, |
79 | | - </span> |
80 | | - <span class="author-block"> |
81 | | - <a href="#" target="_blank">Yasha Ektefaie</a><sup>1</sup>, |
82 | | - </span> |
83 | | - <span class="author-block"> |
84 | | - <a href="#" target="_blank">Ayush Noori</a><sup>1</sup>, |
85 | | - </span> |
86 | | - <span class="author-block"> |
87 | | - <a href="#" target="_blank">Joseph Brown</a><sup>5,†</sup>, |
88 | | - </span> |
89 | | - <span class="author-block"> |
90 | | - <a href="#" target="_blank">Tom Cobley</a><sup>2,6</sup>, |
91 | | - </span> |
92 | | - <span class="author-block"> |
93 | | - <a href="#" target="_blank">Karin Hrovatin</a><sup>7,8</sup>, |
94 | | - </span> |
95 | | - <span class="author-block"> |
96 | | - <a href="https://www.tomhartvigsen.com/" target="_blank">Tom Hartvigsen</a><sup>9</sup>, |
97 | | - </span> |
98 | | - <span class="author-block"> |
99 | | - <a href="https://www.helmholtz-munich.de/en/icb/research-groups/theis-lab" target="_blank">Fabian J. Theis</a><sup>7,10</sup>, |
100 | | - </span> |
101 | | - <span class="author-block"> |
102 | | - <a href="https://pentelutelabmit.com/" target="_blank">Bradley Pentelute</a><sup>5,14</sup>, |
103 | | - </span> |
104 | | - <span class="author-block"> |
105 | | - <a href="https://khuranalab.bwh.harvard.edu/" target="_blank">Vikram Khurana</a><sup>11,12,14</sup>, |
106 | | - </span> |
107 | | - <span class="author-block"> |
108 | | - <a href="https://compbio.mit.edu/" target="_blank">Manolis Kellis</a><sup>2,14</sup>, |
109 | | - </span> |
110 | | - <span class="author-block"> |
111 | | - <a href="https://zitniklab.hms.harvard.edu/" target="_blank">Marinka Zitnik</a><sup>1,13,14,15,‡;</sup> |
112 | | - </span> |
| 59 | + <span class="author-block"><a href="https://owencqueen.github.io/" target="_blank">Owen Queen</a><sup>1,2,*</sup>,</span> |
| 60 | + <span class="author-block"><a href="https://www.linkedin.com/in/yepeng-huang" target="_blank">Yepeng Huang</a><sup>1,*</sup>,</span> |
| 61 | + <span class="author-block"><a href="https://www.linkedin.com/in/robert-calef/" target="_blank">Robert Calef</a><sup>1,3,*</sup>,</span> |
| 62 | + <span class="author-block"><a href="https://valegiunchiglia.github.io/personal_website/" target="_blank">Valentina Giunchiglia</a><sup>1,4,5,*</sup>,</span> |
| 63 | + <span class="author-block"><a href="#" target="_blank">Tianlong Chen</a><sup>1,3,♦</sup>,</span> |
| 64 | + <span class="author-block"><a href="#" target="_blank">George Dasoulas</a><sup>1</sup>,</span> |
| 65 | + <span class="author-block"><a href="#" target="_blank">LeAnn Tai</a><sup>3</sup>,</span> |
| 66 | + <span class="author-block"><a href="#" target="_blank">Gianmarco Abbadessa</a><sup>4,6</sup>,</span> |
| 67 | + <span class="author-block"><a href="#" target="_blank">Owain Howell</a><sup>4,7</sup>,</span> |
| 68 | + <span class="author-block"><a href="#" target="_blank">Michelle M. Li</a><sup>1</sup>,</span> |
| 69 | + <span class="author-block"><a href="#" target="_blank">Yasha Ektefaie</a><sup>1</sup>,</span> |
| 70 | + <span class="author-block"><a href="#" target="_blank">Ayush Noori</a><sup>1</sup>,</span> |
| 71 | + <span class="author-block"><a href="#" target="_blank">Ildiko Farkas</a><sup>4</sup>,</span> |
| 72 | + <span class="author-block"><a href="#" target="_blank">Joseph Brown</a><sup>8,†</sup>,</span> |
| 73 | + <span class="author-block"><a href="#" target="_blank">Tom Cobley</a><sup>2,9</sup>,</span> |
| 74 | + <span class="author-block"><a href="#" target="_blank">Karin Hrovatin</a><sup>10,11</sup>,</span> |
| 75 | + <span class="author-block"><a href="https://www.tomhartvigsen.com/" target="_blank">Tom Hartvigsen</a><sup>12</sup>,</span> |
| 76 | + <span class="author-block"><a href="https://www.helmholtz-munich.de/en/icb/research-groups/theis-lab" target="_blank">Fabian J. Theis</a><sup>10,13</sup>,</span> |
| 77 | + <span class="author-block"><a href="https://pentelutelabmit.com/" target="_blank">Bradley L. Pentelute</a><sup>8,14</sup>,</span> |
| 78 | + <span class="author-block"><a href="https://med.stanford.edu/people/jameszou" target="_blank">James Zou</a><sup>15</sup>,</span> |
| 79 | + <span class="author-block"><a href="https://khuranalab.bwh.harvard.edu/" target="_blank">Vikram Khurana</a><sup>14,16,17</sup>,</span> |
| 80 | + <span class="author-block"><a href="#" target="_blank">David Owen</a><sup>4</sup>,</span> |
| 81 | + <span class="author-block"><a href="#" target="_blank">Richard Nicholas</a><sup>4,5,7</sup>,</span> |
| 82 | + <span class="author-block"><a href="https://compbio.mit.edu/" target="_blank">Manolis Kellis</a><sup>3,14</sup>,</span> |
| 83 | + <span class="author-block"><a href="https://zitniklab.hms.harvard.edu/" target="_blank">Marinka Zitnik</a><sup>1,17,18,19,‡</sup></span> |
113 | 84 | </div> |
114 | 85 |
|
115 | 86 | <details> |
116 | 87 | <summary>Author Affiliations</summary> |
117 | 88 | <div class="is-size-5 publication-authors"> |
118 | 89 | <span class="author-block"><sup>1</sup>Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA</span> |
119 | | - <span class="author-block"><sup>2</sup>Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, USA</span> |
120 | | - <span class="author-block"><sup>3</sup>Department of Brain Sciences, Imperial College London, London, UK</span> |
121 | | - <span class="author-block"><sup>4</sup>Centre for Neuroimaging Sciences, King's College London, London, UK</span> |
122 | | - <span class="author-block"><sup>5</sup>Department of Chemistry, MIT, Cambridge, MA, USA</span> |
123 | | - <span class="author-block"><sup>6</sup>Department of Computing, Imperial College London, London, UK</span> |
124 | | - <span class="author-block"><sup>7</sup>Institute of Computational Biology, Computational Health Center, Helmholtz Munich, Munich, Germany</span> |
125 | | - <span class="author-block"><sup>8</sup>TUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany</span> |
126 | | - <span class="author-block"><sup>9</sup>School of Data Science, University of Virginia, VA, USA</span> |
127 | | - <span class="author-block"><sup>10</sup>School of Computation, Information and Technology, Technical University of Munich, Garching, Germany</span> |
128 | | - <span class="author-block"><sup>11</sup>Department of Neurology, Brigham and Women's Hospital, Boston, MA, USA</span> |
129 | | - <span class="author-block"><sup>12</sup>Harvard Stem Cell Institute, Cambridge, MA, USA</span> |
130 | | - <span class="author-block"><sup>13</sup>Kempner Institute for the Study of Natural and Artificial Intelligence, Harvard University, MA, USA</span> |
| 90 | + <span class="author-block"><sup>2</sup>Department of Computer Science, Stanford University, Stanford, CA, USA</span> |
| 91 | + <span class="author-block"><sup>3</sup>Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, USA</span> |
| 92 | + <span class="author-block"><sup>4</sup>Department of Brain Sciences, Imperial College London, London, UK</span> |
| 93 | + <span class="author-block"><sup>5</sup>Centre for Neuroimaging Sciences, King's College London, London, UK</span> |
| 94 | + <span class="author-block"><sup>6</sup>University of Campania Luigi Vanvitelli, Naples, Italy</span> |
| 95 | + <span class="author-block"><sup>7</sup>Medical School, Swansea University, Swansea, UK</span> |
| 96 | + <span class="author-block"><sup>8</sup>Department of Chemistry, MIT, Cambridge, MA, USA</span> |
| 97 | + <span class="author-block"><sup>9</sup>Department of Computing, Imperial College London, London, UK</span> |
| 98 | + <span class="author-block"><sup>10</sup>Institute of Computational Biology, Computational Health Center, Helmholtz Munich, Munich, Germany</span> |
| 99 | + <span class="author-block"><sup>11</sup>TUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany</span> |
| 100 | + <span class="author-block"><sup>12</sup>School of Data Science, University of Virginia, VA, USA</span> |
| 101 | + <span class="author-block"><sup>13</sup>School of Computation, Information and Technology, Technical University of Munich, Garching, Germany</span> |
131 | 102 | <span class="author-block"><sup>14</sup>Broad Institute of MIT and Harvard, Cambridge, MA, USA</span> |
132 | | - <span class="author-block"><sup>15</sup>Harvard Data Science Initiative, Cambridge, MA, USA</span> |
| 103 | + <span class="author-block"><sup>15</sup>Department of Biomedical Data Science, Stanford University, Stanford, CA, USA</span> |
| 104 | + <span class="author-block"><sup>16</sup>Department of Neurology, Brigham and Women's Hospital, Boston, MA, USA</span> |
| 105 | + <span class="author-block"><sup>17</sup>Harvard Stem Cell Institute, Cambridge, MA, USA</span> |
| 106 | + <span class="author-block"><sup>18</sup>Kempner Institute for the Study of Natural and Artificial Intelligence, Harvard University, MA, USA</span> |
| 107 | + <span class="author-block"><sup>19</sup>Harvard Data Science Initiative, Cambridge, MA, USA</span> |
133 | 108 |
|
134 | 109 | <span class="eql-cntrb"><small><br><sup>*</sup>Co-first authors</small></span> |
135 | | - <span class="eql-cntrb"><small><br><sup>+</sup>Present address: Department of Computer Science, Stanford University, Stanford, CA, USA</small></span> |
136 | | - <span class="eql-cntrb"><small><br><sup>†</sup>Present address: Acceleration Consortium, University of Toronto, Toronto, ON, Canada</small></span> |
137 | | - <span class="eql-cntrb"><small><br><sup>‡</sup>Corresponding author. Email: marinka@hms.harvard.edu</small></span> |
| 110 | + <span class="eql-cntrb"><small><br><sup>♦</sup>Present address: Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA</small></span> |
| 111 | + <span class="eql-cntrb"><small><br><sup>†</sup>Present address: Acceleration Consortium, University of Toronto, Toronto, ON, Canada</small></span> |
| 112 | + <span class="eql-cntrb"><small><br><sup>‡</sup>Corresponding author. Email: marinka@hms.harvard.edu</small></span> |
138 | 113 | </div> |
139 | 114 | </details> |
140 | 115 |
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