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<!DOCTYPE html>
<html lang="en-AU">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>mixOmics Guides — documentation for the open-source mixOmics ecosystem</title>
<meta name="description" content="Guides and reference material for mixOmics: open-source multivariate methods for the integration and exploration of omics data, distributed through Bioconductor.">
<meta name="color-scheme" content="dark">
<meta name="theme-color" content="#232A34">
<meta name="robots" content="index, follow, max-image-preview:large">
<link rel="canonical" href="https://guides.mixomics.org/">
<meta property="og:type" content="website">
<meta property="og:site_name" content="mixOmics Guides">
<meta property="og:title" content="mixOmics Guides">
<meta property="og:description" content="Documentation for the open-source mixOmics ecosystem.">
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<link rel="icon" href="mixomics-favicon.svg" type="image/svg+xml">
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"author": {
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</head>
<body>
<a class="u-skip-link" href="#guides">Skip to guides</a>
<div class="page">
<main class="page__main" id="main">
<header class="masthead">
<img class="masthead__logo" src="mixomics-logo.svg" alt=""
width="640" height="360" fetchpriority="high" decoding="async">
<h1 class="masthead__title">mix<span class="masthead__accent">Omics</span> Guides</h1>
<p class="masthead__lede">
Documentation and reference material for the open-source mixOmics
ecosystem — multivariate methods for the integration and exploration
of omics data.
</p>
</header>
<section class="page__section" aria-labelledby="guides">
<h2 class="page__eyebrow" id="guides">Guides</h2>
<!-- GUIDES:START — generated by .github/workflows/build-index.yml
Do not edit by hand. Tag a repository with the topic `mixomics-guide`
plus one of `guide-vignette` / `guide-tutorial` / `guide-reference`,
and enable Pages on it; the next run picks it up. -->
<ul class="guides">
<li class="guides__item">
<a class="guide guide--vignette" href="/mixomics-guide-vignette/">
<span class="guide__type">Vignette</span>
<span class="guide__title">mixomics-guide-vignette</span>
<span class="guide__note">Long-form guide to the methods, with worked examples.</span>
</a>
</li>
</ul>
<!-- GUIDES:END -->
</section>
<section class="page__section" aria-labelledby="install">
<h2 class="page__eyebrow" id="install">Install</h2>
<div class="code">
<button class="code__copy" type="button" data-copy="#install-source" title="Copy">
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</button>
<pre class="code__pre" id="install-source"><code class="code__source"><span class="code__comment"># from Bioconductor</span>
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mixOmics")</code></pre>
</div>
<p class="code__status" role="status" aria-live="polite"></p>
</section>
<footer class="site-footer">
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<svg class="social__icon" viewBox="0 0 24 24" aria-hidden="true" focusable="false"><path d="M12 .3a12 12 0 0 0-3.79 23.4c.6.1.82-.26.82-.58v-2.23c-3.34.73-4.04-1.42-4.04-1.42-.55-1.39-1.34-1.76-1.34-1.76-1.09-.75.08-.73.08-.73 1.2.08 1.84 1.24 1.84 1.24 1.07 1.84 2.81 1.31 3.5 1 .1-.78.42-1.31.76-1.61-2.67-.3-5.47-1.34-5.47-5.94 0-1.31.47-2.38 1.24-3.22-.14-.3-.54-1.52.1-3.18 0 0 1-.32 3.3 1.23a11.5 11.5 0 0 1 6 0c2.28-1.55 3.29-1.23 3.29-1.23.65 1.66.24 2.88.12 3.18.77.84 1.23 1.91 1.23 3.22 0 4.61-2.8 5.63-5.48 5.93.43.37.81 1.1.81 2.22v3.29c0 .32.22.7.83.58A12 12 0 0 0 12 .3z"/></svg>
</a>
</li>
</ul>
<p class="site-footer__colophon">
mixOmics is free and open-source software, released under
<a class="site-footer__link" href="https://github.com/mixOmics-org/mixOmics/blob/master/LICENSE" target="_blank" rel="noopener">GPL (>= 2)</a>,
and developed since 2009 by
<a class="site-footer__link" href="https://orcid.org/0000-0003-3923-1116" target="_blank" rel="noopener">Professor Kim-Anh Lê Cao</a>
and colleagues.
</p>
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