Align two DNA sequences in either a global or dynamic programming matrix
Takes in two sequences as command line arguments, a third argument that is either 'local' or 'global', and a fourth argument that is a gap penalty. It fills in either a local or global dynamic programming matrix depending on the third argument. Functions can be found in "seqUtils.py"
Run example:
C:\>alignment.py ACTGTGCCGA AGTCTTCCGA global -1