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ui.R
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library(shinydashboard)
library(shiny)
library(plotly)
header <- shinydashboard::dashboardHeader(
title = tags$a(tags$img(
src = "PredicTER_logo.png",
width = 250,
height = 40
)
),
titleWidth = 350
)
sidebar <- shinydashboard::dashboardSidebar(
width = 350,
sidebarMenu(
id = "tabs",
menuItem("Review Type",
menuSubItem(
tabName = "syst_review",
text = "Systematic Review",
selected = TRUE
),
menuSubItem(
tabName = "syst_map",
text = "Systematic Map"
),
uiOutput("review_type_text"),
actionLink(
inputId = "help_review_type",
label = icon("question-circle")
)
),
menuItem("Planning",
icon = icon("pencil"),
expandedName = "planning",
br(),
splitLayout(
HTML("Number of days spent<br>on project planning"),
textInput(
inputId = "planning",
label = NULL,
value="20"
),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("Number of days spent<br>on protocol development"),
textInput(
inputId = "protocol",
label = NULL,
value = "5"
),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("Percentage of project time<br>spent on administration"),
textInput(
inputId = "pc_admin",
label = NULL,
value = "19"
),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("Proportion of lead author time<br>spent on project (FTE)"),
textInput(
inputId = "fte",
label = NULL,
value = "0.5"
),
cellWidths = c("60%", "40%")
),
actionLink(
inputId = "help_planning",
label = icon("question-circle")
)
),
menuItem("Searching",
icon = icon("search"),
expandedName = "searching",
h4("Databases"),
splitLayout(
p("Type"),
HTML("Number searched<br>(total)"),
HTML("Number searched<br>per day"),
cellWidths = c("25%", "40%", "35%")
),
splitLayout(
HTML("Academic<br>Databases"),
textInput(
inputId = "n_databases",
label = NULL,
value = "9"
),
textInput(
inputId = "n_db_perday",
label = NULL,
value = "4"
),
cellWidths = c("20%", "40%", "40%")
),
splitLayout(
HTML("Grey<br>Literature"),
textInput(
inputId = "n_grey",
label = NULL,
value = "16"
),
textInput(
inputId = "n_grey_perday",
label = NULL,
value = "12"),
cellWidths = c("20%", "40%", "40%")
),
splitLayout(
HTML("Reference<br>Lists<br>Checked"),
textInput(
inputId = "n_bib",
label = NULL,
value = "10"),
cellWidths = c("20%", "40%")
),
br(),
h4("Further Information"),
splitLayout(
HTML("Days spent on additional<br>search methods"),
textInput(
inputId = "time_grey_add",
label = NULL,
value = "2"),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("<b>Total number of articles<br>located</b> (all searches)"),
textInput(
inputId = "n_search",
label = NULL,
value = "11786"),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("% unique articles<br>(i.e. % left after de-duplication)"),
textInput(
inputId = "unique_percent",
label = NULL,
value = "72.1"
),
cellWidths = c("60%", "40%")
),
splitLayout(
p("Days spent removing duplicates"),
textInput(
inputId = "unique_time",
label = NULL,
value = "1.4"),
cellWidths = c("60%", "40%")
),
actionLink(
inputId = "help_searching",
label = icon("question-circle")
)
),
menuItem("Screening",
icon = icon("book"),
expandedName ="screening",
splitLayout(
HTML("Review<br>stage"),
HTML("N. screened<br>per day"),
HTML("Percent<br>retained"),
HTML("Percent<br>checked"),
cellWidths = c("30%", "25%", "25%", "20%")
),
splitLayout(
HTML("Title<br>screening"),
textInput(
inputId = "row2_title_nperday",
label = NULL,
value = "854"
),
textInput(
inputId = "row2_title_percent",
label = NULL,
value = "14.6"
),
textInput(
inputId = "row2_title_checked",
label = NULL,
value = "10"),
cellWidths = c("25%", "25%", "25%", "25%")
),
splitLayout(
HTML("Abstract<br>screening"),
textInput(
inputId = "row3_abstract_nperday",
label = NULL,
value = "192"
),
textInput(
inputId = "row3_abstract_percent",
label = NULL,
value = "25.0"
),
textInput(
inputId = "row3_abstract_checked",
label = NULL,
value = "10"
),
cellWidths = c("25%", "25%", "25%", "25%")
),
splitLayout(
HTML("Full text<br>retrieval"),
textInput(
inputId = "row4_retrieved_nperday",
label = NULL,
value = "171"
),
textInput(
inputId = "row4_retrieved_percent",
label = NULL,
value = "131.1"
),
textInput(
inputId = "row4_retrieved_checked",
label = NULL,
value = "0"
),
cellWidths = c("25%", "25%", "25%", "25%")
),
splitLayout(
HTML("Full text<br>screening"),
textInput(
inputId = "row5_fulltext_nperday",
label = NULL,
value = "44"
),
textInput(
inputId = "row5_fulltext_percent",
label = NULL,
value = "23.0"
),
textInput(
inputId = "row5_fulltext_checked",
label = NULL,
value = "10"
),
cellWidths = c("25%", "25%", "25%", "25%")
),
actionLink(
inputId = "help_screening",
label = icon("question-circle")
)
),
menuItem("Data Extraction, Appraisal & Synthesis",
icon = icon("table"),
expandedName ="data",
tags$div(id = 'placeholder_selector'), # location for critical appraisal selector
splitLayout(
HTML("Review<br>stage"),
HTML("N. screened<br>per day"),
HTML("Percent<br>retained"),
HTML("Percent<br>checked"),
cellWidths = c("30%", "25%", "25%", "20%")
),
splitLayout(
HTML("Meta-data<br>extraction"),
textInput(
inputId = "row6_metadata_nperday",
label = NULL,
value = "16.7"
),
textInput(
inputId = "row6_metadata_percent",
label = NULL,
value = "100.0"
),
textInput(
inputId = "row6_metadata_checked",
label = NULL,
value = "0"
),
cellWidths = c("25%", "25%", "25%", "25%")
),
tags$div(id = 'placeholder_ca'), # location for critical appraisal content
tags$div(id = 'placeholder_SRs'), # location for data extraction and prep.
actionLink("help_deas", icon("question-circle"))
),
menuItem("Reporting", icon=icon("bullhorn"), expandedName="reporting",
br(),
splitLayout(
HTML("Number of days spent on<br>quant. or qual. synthesis"),
textInput(
inputId = "synthesis",
label = NULL,
value = "15"
),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("Number of days spent<br>on report writing"),
textInput(
inputId = "report",
label = NULL,
value = "15"
),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("Number of days spent<br>on communication"),
textInput(
inputId = "comms",
label = NULL,
value = "10"
),
cellWidths = c("60%", "40%")
),
splitLayout(
HTML("Number of days spent<br>in meetings"),
textInput(
inputId = "meetings",
label = NULL,
value = "4"
),
cellWidths = c("60%", "40%")
),
actionLink(
inputId = "help_reporting",
label = icon("question-circle")
)
),
br(),
br(),
actionLink(
inputId = "about",
label = "About PredicTER"
)
)
)
body<-shinydashboard::dashboardBody(
tags$style(HTML("
.content-wrapper,
.right-side {
background-color: #e2e2e2;
}
.small-box.bg-black {
background-color: #777777 !important;
color: #fff !important;
}
.skin-black .main-header .logo {
background-color: #777777;
}
.skin-black .main-header .logo:hover {
background-color: #777777;
}
.skin-black .main-header .navbar {
background-color: #777777;
}
.box.box-solid.box-primary>.box-header {
color:#fff;
background:#444444
}
.box.box-solid.box-primary{
border-bottom-color:#444444;
border-left-color:#444444;
border-right-color:#444444;
border-top-color:#444444;
}
.download_class{
background-color: #444444;
color: #e2e2e2;
}
#view
")),
fluidRow(
infoBoxOutput("total_box"),
infoBoxOutput("fte_box"),
infoBoxOutput("admin_box")
),
fluidRow(
box(
width = 8,
title = "Number of Days",
solidHeader = TRUE,
status = "primary",
plotly::plotlyOutput(
outputId = "plot_days",
height = 650
),
br(),
actionButton(
inputId = "view_data_1",
label = "View data",
style = "background-color: #444444; color: #e2e2e2;"
),
downloadButton(
outputId = "download_table1",
label = "Download csv",
class = "download_class"
)
),
box(
width = 4,
title = "Number of Articles",
solidHeader = TRUE,
status = "primary",
plotly::plotlyOutput(
outputId = "plot_articles",
height = 650
),
br(),
actionButton(
inputId = "view_data_2",
label = "View data",
style = "background-color: #444444; color: #e2e2e2;"
),
downloadButton(
outputId = "download_table2",
label = "Download csv",
class = "download_class"
)
)
)
)
ui <- shinydashboard::dashboardPage(
header,
sidebar,
body,
title = "PredicTER",
skin = "black")