SynthMT/.github/workflows/ci.yml at 448b8f99a1c8a76c1295c1fcc148aa0ca12d4938 · ml-lab-htw/SynthMT · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
# =============================================================================
# SynthMT CI Pipeline
# =============================================================================
# Runs tests via pytest after each commit and pull request
# =============================================================================

name: CI

on:
  push:
    branches: [main, develop]
  pull_request:
    branches: [main, develop]
  workflow_dispatch:  # Allow manual trigger

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11", "3.12"]

    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: 'pip'

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install pytest pytest-cov
          pip install -e .[models]
          # Install transformers pre-release for SAM3 support
          pip install -U transformers --pre

      - name: Verify installation
        run: |
          python -c "import synth_mt; print('synth_mt imported successfully')"
          pip list | grep synth

      - name: Run tests with pytest
        run: |
          # Run tests, ignoring tests that require optional dependencies
          # --ignore patterns for tests requiring specific optional deps
          pytest tests/ -v --tb=short \
            --ignore=tests/models/ \
            --ignore=tests/model_hpo/ \
            -x

  test-full:
    # Full test suite - runs on main branch only or manually
    runs-on: ubuntu-latest
    if: github.ref == 'refs/heads/main' || github.event_name == 'workflow_dispatch'

    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Set up Python 3.11
        uses: actions/setup-python@v5
        with:
          python-version: "3.11"
          cache: 'pip'

      - name: Install all dependencies
        run: |
          python -m pip install --upgrade pip
          pip install pytest pytest-cov
          pip install -e .[models,dev]
          pip install -U transformers --pre
          # Optional: Install tensorflow for stardist tests
          # pip install tensorflow

      - name: Run full test suite
        run: |
          pytest tests/ -v --tb=short || true
        continue-on-error: true

  lint:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.11"
          cache: 'pip'

      - name: Install linting tools
        run: |
          python -m pip install --upgrade pip
          pip install ruff black

      - name: Run ruff linter
        run: |
          ruff check synth_mt/ --output-format=github
        continue-on-error: true

      - name: Check formatting with black
        run: |
          black --check --diff synth_mt/
        continue-on-error: true