diff --git a/.gitignore b/.gitignore
index 6c020676..3324f032 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,64 @@
+# Python
 __pycache__/
+*.py[cod]
+*$py.class
+*.so
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# Testing
+.pytest_cache/
+.coverage
+htmlcov/
+coverage.xml
+*.cover
+.hypothesis/
+.tox/
+
+# Virtual environments
+venv/
+ENV/
+env/
+.venv/
+virtualenv/
+
+# IDE
+.vscode/
+.idea/
+*.swp
+*.swo
+*~
+
+# Claude
+.claude/*
+
+# OS
 **/.DS_Store
+.DS_Store
+Thumbs.db
+
+# Project specific
+*.pdf
+*.html
+combined_*.md
+test_*.md
+test_*.pdf
+test_*.html
+
+# Package manager
+# Note: Do not ignore poetry.lock or uv.lock
+.poetry/
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 00000000..344c493e
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,757 @@
+# This file is automatically @generated by Poetry 2.1.3 and should not be changed by hand.
+
+[[package]]
+name = "blinker"
+version = "1.8.2"
+description = "Fast, simple object-to-object and broadcast signaling"
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = [
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+    {file = "blinker-1.8.2.tar.gz", hash = "sha256:8f77b09d3bf7c795e969e9486f39c2c5e9c39d4ee07424be2bc594ece9642d83"},
+]
+
+[[package]]
+name = "certifi"
+version = "2025.6.15"
+description = "Python package for providing Mozilla's CA Bundle."
+optional = false
+python-versions = ">=3.7"
+groups = ["main"]
+files = [
+    {file = "certifi-2025.6.15-py3-none-any.whl", hash = "sha256:2e0c7ce7cb5d8f8634ca55d2ba7e6ec2689a2fd6537d8dec1296a477a4910057"},
+    {file = "certifi-2025.6.15.tar.gz", hash = "sha256:d747aa5a8b9bbbb1bb8c22bb13e22bd1f18e9796defa16bab421f7f7a317323b"},
+]
+
+[[package]]
+name = "charset-normalizer"
+version = "3.4.2"
+description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+optional = false
+python-versions = ">=3.7"
+groups = ["main"]
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diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 00000000..3740cfde
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,90 @@
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+    "slow: marks tests as slow running",
+]
+filterwarnings = [
+    "error",
+    "ignore::UserWarning",
+    "ignore::DeprecationWarning",
+]
+
+[tool.coverage.run]
+source = ["."]
+omit = [
+    "*/tests/*",
+    "*/__pycache__/*",
+    "*/venv/*",
+    "*/virtualenv/*",
+    "*/.venv/*",
+    "*/site-packages/*",
+    "*/dist/*",
+    "*/build/*",
+    "*/.eggs/*",
+    "*/setup.py",
+    "*/conftest.py",
+]
+
+[tool.coverage.report]
+exclude_lines = [
+    "pragma: no cover",
+    "def __repr__",
+    "if self.debug:",
+    "if __name__ == .__main__.:",
+    "raise AssertionError",
+    "raise NotImplementedError",
+    "if 0:",
+    "if False:",
+    "pass",
+]
+precision = 2
+skip_covered = true
+show_missing = true
+
+[tool.coverage.html]
+directory = "htmlcov"
+
+[tool.coverage.xml]
+output = "coverage.xml"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
\ No newline at end of file
diff --git a/tests/__init__.py b/tests/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/tests/conftest.py b/tests/conftest.py
new file mode 100644
index 00000000..f336f551
--- /dev/null
+++ b/tests/conftest.py
@@ -0,0 +1,180 @@
+"""Shared pytest fixtures and configuration for all tests."""
+
+import os
+import shutil
+import tempfile
+from pathlib import Path
+from typing import Generator
+
+import pytest
+
+
+@pytest.fixture
+def temp_dir() -> Generator[Path, None, None]:
+    """Create a temporary directory for test files.
+    
+    Yields:
+        Path: Path to the temporary directory
+    """
+    temp_path = Path(tempfile.mkdtemp())
+    yield temp_path
+    shutil.rmtree(temp_path)
+
+
+@pytest.fixture
+def sample_markdown_content() -> str:
+    """Provide sample markdown content for testing.
+    
+    Returns:
+        str: Sample markdown text
+    """
+    return """# Sample Chapter
+
+This is a **sample** chapter with:
+- Bullet points
+- [Links](https://example.com)
+- `Code snippets`
+
+## Subsection
+
+More content here.
+"""
+
+
+@pytest.fixture
+def sample_chapter_file(temp_dir: Path) -> Path:
+    """Create a sample chapter file for testing.
+    
+    Args:
+        temp_dir: Temporary directory fixture
+        
+    Returns:
+        Path: Path to the created chapter file
+    """
+    chapter_path = temp_dir / "ch01.md"
+    chapter_path.write_text("""# Chapter 01 - Introduction
+
+This is the first chapter of the book.
+
+## Key Concepts
+
+- Machine Learning
+- Deep Learning
+- Neural Networks
+""")
+    return chapter_path
+
+
+@pytest.fixture
+def mock_chapters_dir(temp_dir: Path) -> Path:
+    """Create a mock chapters directory with sample files.
+    
+    Args:
+        temp_dir: Temporary directory fixture
+        
+    Returns:
+        Path: Path to the chapters directory
+    """
+    chapters_dir = temp_dir / "chapters"
+    chapters_dir.mkdir()
+    
+    # Create sample chapter files
+    for i in range(1, 4):
+        chapter_file = chapters_dir / f"ch{i:02d}.md"
+        chapter_file.write_text(f"# Chapter {i:02d}\n\nContent for chapter {i}.")
+    
+    return chapters_dir
+
+
+@pytest.fixture
+def mock_imgs_dir(temp_dir: Path) -> Path:
+    """Create a mock images directory.
+    
+    Args:
+        temp_dir: Temporary directory fixture
+        
+    Returns:
+        Path: Path to the images directory
+    """
+    imgs_dir = temp_dir / "imgs"
+    imgs_dir.mkdir()
+    
+    # Create a placeholder image file
+    (imgs_dir / "sample.png").write_text("placeholder")
+    
+    return imgs_dir
+
+
+@pytest.fixture
+def mock_project_structure(temp_dir: Path, mock_chapters_dir: Path, mock_imgs_dir: Path) -> Path:
+    """Create a complete mock project structure.
+    
+    Args:
+        temp_dir: Temporary directory fixture
+        mock_chapters_dir: Mock chapters directory
+        mock_imgs_dir: Mock images directory
+        
+    Returns:
+        Path: Path to the project root
+    """
+    # Create additional files
+    (temp_dir / "README.md").write_text("# Machine Learning Yearning")
+    (temp_dir / "acknowledgement.md").write_text("# Acknowledgements\n\nThanks to everyone.")
+    (temp_dir / "glossary_vi.md").write_text("# Glossary\n\nML terms in Vietnamese.")
+    
+    return temp_dir
+
+
+@pytest.fixture
+def env_vars() -> dict:
+    """Provide test environment variables.
+    
+    Returns:
+        dict: Dictionary of environment variables
+    """
+    return {
+        "TEST_MODE": "true",
+        "PYTHONPATH": str(Path.cwd()),
+    }
+
+
+@pytest.fixture
+def mock_pdf_config() -> dict:
+    """Provide mock PDF configuration.
+    
+    Returns:
+        dict: PDF configuration options
+    """
+    return {
+        "page-size": "A4",
+        "margin-top": "1in",
+        "margin-right": "1in",
+        "margin-bottom": "1in",
+        "margin-left": "1in",
+        "encoding": "UTF-8",
+        "enable-local-file-access": None,
+    }
+
+
+@pytest.fixture(autouse=True)
+def cleanup_test_files():
+    """Automatically clean up any test files created during tests."""
+    yield
+    # Clean up any files created in the current directory during tests
+    test_patterns = ["test_*.md", "test_*.pdf", "test_*.html", "combined_*.md"]
+    for pattern in test_patterns:
+        for file in Path.cwd().glob(pattern):
+            if file.exists():
+                file.unlink()
+
+
+@pytest.fixture
+def monkeypatch_env(monkeypatch, env_vars):
+    """Automatically set environment variables for tests.
+    
+    Args:
+        monkeypatch: pytest monkeypatch fixture
+        env_vars: Environment variables fixture
+    """
+    for key, value in env_vars.items():
+        monkeypatch.setenv(key, value)
\ No newline at end of file
diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/tests/test_setup_validation.py b/tests/test_setup_validation.py
new file mode 100644
index 00000000..92eb867b
--- /dev/null
+++ b/tests/test_setup_validation.py
@@ -0,0 +1,80 @@
+"""Validation tests to ensure the testing infrastructure is set up correctly."""
+
+import sys
+from pathlib import Path
+
+import pytest
+
+
+class TestSetupValidation:
+    """Test class to validate the testing setup."""
+    
+    def test_pytest_installed(self):
+        """Verify pytest is installed and importable."""
+        assert pytest.__version__
+        
+    def test_pytest_cov_installed(self):
+        """Verify pytest-cov is installed."""
+        import pytest_cov
+        assert pytest_cov
+        
+    def test_pytest_mock_installed(self):
+        """Verify pytest-mock is installed."""
+        import pytest_mock
+        assert pytest_mock
+        
+    def test_project_structure(self):
+        """Verify the project structure is as expected."""
+        project_root = Path.cwd()
+        
+        # Check main files exist
+        assert (project_root / "run.py").exists()
+        assert (project_root / "pyproject.toml").exists()
+        
+        # Check directories exist
+        assert (project_root / "chapters").exists()
+        assert (project_root / "imgs").exists()
+        assert (project_root / "tests").exists()
+        assert (project_root / "tests" / "unit").exists()
+        assert (project_root / "tests" / "integration").exists()
+        
+    def test_conftest_fixtures(self, temp_dir, sample_markdown_content):
+        """Verify conftest fixtures are working."""
+        assert temp_dir.exists()
+        assert temp_dir.is_dir()
+        assert isinstance(sample_markdown_content, str)
+        assert "# Sample Chapter" in sample_markdown_content
+        
+    def test_temp_dir_cleanup(self, temp_dir):
+        """Verify temp_dir fixture cleans up after itself."""
+        test_file = temp_dir / "test.txt"
+        test_file.write_text("test content")
+        assert test_file.exists()
+        # Cleanup happens after test completes
+        
+    @pytest.mark.unit
+    def test_unit_marker(self):
+        """Test that unit test marker works."""
+        assert True
+        
+    @pytest.mark.integration
+    def test_integration_marker(self):
+        """Test that integration test marker works."""
+        assert True
+        
+    @pytest.mark.slow
+    def test_slow_marker(self):
+        """Test that slow test marker works."""
+        assert True
+        
+    def test_python_path(self):
+        """Verify Python can import the main module."""
+        # Add project root to path if not already there
+        project_root = str(Path.cwd())
+        if project_root not in sys.path:
+            sys.path.insert(0, project_root)
+            
+        # Try to import the main module
+        import run
+        assert hasattr(run, 'BookMD')
+        assert hasattr(run, 'BookPDF')
\ No newline at end of file
diff --git a/tests/unit/__init__.py b/tests/unit/__init__.py
new file mode 100644
index 00000000..e69de29b