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Launch issue with Medical Imaging using 3d-unet #2095

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@Agalakdak

Description

@Agalakdak

I followed this https://docs.mlcommons.org/inference/benchmarks/medical_imaging/3d-unet/

To launch the benchmark. But I got an error when entering the command below

cm run script --tags=run-mlperf,inference,_find-performance,_full,_r5.0-dev \
   --model=3d-unet-99 \
   --implementation=nvidia \
   --framework=tensorrt \
   --category=edge \
   --scenario=Offline \
   --execution_mode=test \
   --device=cuda  \
   --docker --quiet \
   --test_query_count=50

ERROR MESSAGE:

INFO:root:         ! cd /home/ml_bench/CM/repos/mlcommons@mlperf-automations/script/app-mlperf-inference/dockerfiles
INFO:root:         ! call /home/ml_bench/CM/repos/mlcommons@mlperf-automations/script/build-docker-image/run.sh from tmp-run.sh
[+] Building 0.5s (14/15)                                                                                                                                                                                                                                           docker:default
 => [internal] load build definition from mlperf-inference:mlpinf-v3.1-cuda12.2-cudnn8.9-x86_64-ubuntu20.04-l4-public.Dockerfile                                                                                                                                              0.0s
 => => transferring dockerfile: 3.67kB                                                                                                                                                                                                                                        0.0s
 => [internal] load metadata for nvcr.io/nvidia/mlperf/mlperf-inference:mlpinf-v3.1-cuda12.2-cudnn8.9-x86_64-ubuntu20.04-l4-public                                                                                                                                            0.3s
 => [internal] load .dockerignore                                                                                                                                                                                                                                             0.0s
 => => transferring context: 45B                                                                                                                                                                                                                                              0.0s
 => [ 1/12] FROM nvcr.io/nvidia/mlperf/mlperf-inference:mlpinf-v3.1-cuda12.2-cudnn8.9-x86_64-ubuntu20.04-l4-public@sha256:9c2dc22bd860249b0293706a39a72c0988b5bef3f43a0ae2d3471d7ea447a48a                                                                                    0.0s
 => CACHED [ 2/12] RUN apt-get update -y                                                                                                                                                                                                                                      0.0s
 => CACHED [ 3/12] RUN apt-get install -y python3 python3-pip git sudo wget python3-venv                                                                                                                                                                                      0.0s
 => CACHED [ 4/12] RUN ln -snf /usr/share/zoneinfo/US/Pacific /etc/localtime && echo US/Pacific >/etc/timezone                                                                                                                                                                0.0s
 => CACHED [ 5/12] RUN groupadd -g  1003  -o cm                                                                                                                                                                                                                               0.0s
 => CACHED [ 6/12] RUN useradd -m -u  1003  -g  1003  -o --create-home --shell /bin/bash cmuser                                                                                                                                                                               0.0s
 => CACHED [ 7/12] RUN echo "cmuser ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers                                                                                                                                                                                                  0.0s
 => CACHED [ 8/12] WORKDIR /home/cmuser                                                                                                                                                                                                                                       0.0s
 => CACHED [ 9/12] RUN python3 -m pip install wheel cmind requests giturlparse tabulate                                                                                                                                                                                       0.0s
 => CACHED [10/12] RUN cm pull repo mlcommons@mlperf-automations --branch=dev                                                                                                                                                                                                 0.0s
 => ERROR [11/12] RUN cm run script --tags=get,sys-utils-cm --quiet                                                                                                                                                                                                           0.2s
------                                                                                                                                                                                                                                                                             
 > [11/12] RUN cm run script --tags=get,sys-utils-cm --quiet:
0.155 
0.155 CM error: automation "script" not found!
------

 1 warning found (use docker --debug to expand):
 - SecretsUsedInArgOrEnv: Do not use ARG or ENV instructions for sensitive data (ARG "CM_GH_TOKEN") (line 13)
mlperf-inference:mlpinf-v3.1-cuda12.2-cudnn8.9-x86_64-ubuntu20.04-l4-public.Dockerfile:42
--------------------
  40 |     
  41 |     # Install all system dependencies
  42 | >>> RUN cm run script --tags=get,sys-utils-cm --quiet
  43 |     
  44 |     # Run commands
--------------------
ERROR: failed to solve: process "/bin/sh -c cm run script --tags=get,sys-utils-cm --quiet" did not complete successfully: exit code: 4

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