Description
Over the last couple days, I suddenly wasn't able to build the conda environment using conda env create -f environment.yml
anymore and kept getting the attached error message. After following advice given in yaml/pyyaml#724 (comment) and changing the pyyaml requirement to pyyaml==5.3.1
I was able to build the environment again. Not sure if this is a good permanent fix but I just wanted to raise awareness about this issue.
Error message:
Collecting pyyaml==5.4.1
Using cached PyYAML-5.4.1.tar.gz (175 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'error'Pip subprocess error:
error: subprocess-exited-with-error× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [62 lines of output]
/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config insetup.cfg
!!******************************************************************************** The license_file parameter is deprecated, use license_files instead. By 2023-Oct-30, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! parsed = self.parsers.get(option_name, lambda x: x)(value) running egg_info writing lib3/PyYAML.egg-info/PKG-INFO writing dependency_links to lib3/PyYAML.egg-info/dependency_links.txt writing top-level names to lib3/PyYAML.egg-info/top_level.txt Traceback (most recent call last): File "/itet-stor/brunnedu/net_scratch/conda_envs/datacomp/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module> main() File "/itet-stor/brunnedu/net_scratch/conda_envs/datacomp/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/itet-stor/brunnedu/net_scratch/conda_envs/datacomp/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 130, in get_requires_for_build_wheel return hook(config_settings) File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 355, in get_requires_for_build_wheel return self._get_build_requires(config_settings, requirements=['wheel']) File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 325, in _get_build_requires self.run_setup() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 341, in run_setup exec(code, locals()) File "<string>", line 271, in <module> File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/__init__.py", line 103, in setup return distutils.core.setup(**attrs) File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 989, in run_command super().run_command(command) File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 318, in run self.find_sources() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 326, in find_sources mm.run() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 548, in run self.add_defaults() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 586, in add_defaults sdist.add_defaults(self) File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/command/sdist.py", line 113, in add_defaults super().add_defaults() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults self._add_defaults_ext() File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/sdist.py", line 336, in _add_defaults_ext self.filelist.extend(build_ext.get_source_files()) File "<string>", line 201, in get_source_files File "/tmp/pip-build-env-7n51fsjq/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 107, in __getattr__ raise AttributeError(attr) AttributeError: cython_sources [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.note: This error originates from a subprocess, and is likely not a problem with pip.
failed
CondaEnvException: Pip failed