fix survdstr and mlr3extralearners (#28)

* fix survdstr and mlr3extralearners

* remove pendensity

* ...

Author: be-marc

mlr3book/Dockerfile

@@ -35,12 +35,10 @@ RUN Rscript - <<'EOF'
 install.packages('pak', repos = sprintf('https://r-lib.github.io/p/pak/stable/%s/%s/%s', .Platform$pkgType, R.Version()$os, R.Version()$arch))
 pak::repo_add(
     mlr3universe = "https://mlr-org.r-universe.dev",
-    multiverse = "https://community.r-multiverse.org",
-    raphaels1 = "https://raphaels1.r-universe.dev")
+    multiverse = "https://community.r-multiverse.org")
 pak::pak("mlr3verse", dependencies = TRUE, ask = FALSE)
 pak::pak(c(
-    "mlr-org/mlr3cmprsk",
-    "mlr-org/survdistr",
+    "mlr3cmprsk",
     "bestNormalize",
     "clue",
     "counterfactuals",
@@ -75,7 +73,6 @@ pak::pak(c(
     "nloptr",
     "nycflights13",
     "partykit",
-    "pendensity",
     "PMCMRplus",
     "precrec",
     "qgam",

mlr3full/Dockerfile

@@ -36,8 +36,7 @@ pak::repo_add(
     raphaels1 = "https://raphaels1.r-universe.dev")
 pak::pak(c(
     catboost_url,
-    "mlr-org/mlr3cmprsk",
-    "mlr-org/survdistr",
+    "mlr3cmprsk",
     "mlr3verse",
     "bbotk",
     "mlr3db",

mlr3gallery/Dockerfile

@@ -19,12 +19,10 @@ RUN Rscript - <<'EOF'
 install.packages('pak', repos = sprintf('https://r-lib.github.io/p/pak/rc/%s/%s/%s', .Platform$pkgType, R.Version()$os, R.Version()$arch))
 pak::repo_add(
     mlr3universe = "https://mlr-org.r-universe.dev",
-    multiverse = "https://community.r-multiverse.org",
-    raphaels1 = "https://raphaels1.r-universe.dev")
+    multiverse = "https://community.r-multiverse.org")
 pak::pak("mlr3verse", dependencies = TRUE, ask = FALSE)
 pak::pak(c(
-    "mlr-org/mlr3cmprsk",
-    "mlr-org/survdistr",
+    "mlr3cmprsk",
     "adagio",
     "anytime",
     "apcluster",
@@ -91,7 +89,7 @@ pak::pak(c(
     "torchvision",
     "viridisLite"), ask = FALSE)
 torch::install_torch()
-pak::pak(c("precrec", "RSQLite", "DiceKriging", "FSelectorRcpp", "mlr-org/mlr3website"), dependencies = FALSE, ask = FALSE)
+pak::pak(c("precrec", "RSQLite", "DiceKriging", "FSelectorRcpp", "here", "mlr-org/mlr3website"), dependencies = FALSE, ask = FALSE)
 EOF
 
 ENV PASSWORD=rstudio