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@@ -10,12 +10,14 @@ Extending mlr3 to functional data.
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Install the last release from [CRAN](https://CRAN.R-project.org):
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``` r
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install.packages("mlr3fda")
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```
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Install the development version from [GitHub](https://github.com/):
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``` r
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# install.packages("pak")
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pak::pak("mlr-org/mlr3fda")
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```
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available after loading `mlr3fda`:
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``` r
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library(mlr3fda)
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mlr_reflections$task_feature_types[c("tfr", "tfi")]
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#> tfr tfi
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this task also contains two functional columns `cca` and `rcst`.
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``` r
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task = tsk("dti")
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task
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#>
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value.
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``` r
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po_fmean = po("fda.extract", features = "mean")
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task_fmean = po_fmean$train(list(task))[[1L]]
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extracts features and then trains a model.
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``` r
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# split data into train and test set
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ids = partition(task)
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## Implemented PipeOps
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| Key | Label | Packages | Tags |
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|:---------------------------------------------------------------------------------------------|:-------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------|
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| [fda.bsignal](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.bsignal) | B-spline Feature Extraction | [tf](https://cran.r-project.org/package=tf), [mboost](https://cran.r-project.org/package=mboost), [FDboost](https://cran.r-project.org/package=FDboost) | fda, data transform |
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| [fda.cor](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.cor) | Cross-Correlation of Functional Data | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.extract](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.extract) | Extracts Simple Features from Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.flatten](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.flatten) | Flattens Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.fourier](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.fourier) | Fast Fourier transform features | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.fpca](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.fpca) | Functional Principal Component Analysis | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.interpol](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.interpol) | Interpolate Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.random_effect](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.random_effect) | Extracts Random Effects from Functional Columns | [tf](https://cran.r-project.org/package=tf), [lme4](https://cran.r-project.org/package=lme4) | fda, data transform |
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| [fda.scalerange](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.scalerange) | Linearly Transform the Domain of Functional Data | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.smooth](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.smooth) | Smoothing Functional Columns | [tf](https://cran.r-project.org/package=tf), stats | fda, data transform |
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| [fda.tsfeats](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.tsfeats) | Time Series Feature Extraction | [tf](https://cran.r-project.org/package=tf), [tsfeatures](https://cran.r-project.org/package=tsfeatures) | fda, data transform |
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| [fda.wavelets](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.wavelets) | Discrete Wavelet transform features | [tf](https://cran.r-project.org/package=tf), [wavelets](https://cran.r-project.org/package=wavelets) | fda, data transform |
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| [fda.zoom](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.zoom) | Zoom In/Out on Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| Key | Label | Packages | Tags |
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|:---|:---|:---|:---|
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| [fda.bsignal](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.bsignal) | B-spline Feature Extraction | [tf](https://cran.r-project.org/package=tf), [mboost](https://cran.r-project.org/package=mboost), [FDboost](https://cran.r-project.org/package=FDboost) | fda, data transform |
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| [fda.cor](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.cor) | Cross-Correlation of Functional Data | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.extract](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.extract) | Extracts Simple Features from Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.flatten](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.flatten) | Flattens Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.fourier](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.fourier) | Fast Fourier transform features | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.fpca](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.fpca) | Functional Principal Component Analysis | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.interpol](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.interpol) | Interpolate Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.random_effect](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.random_effect) | Extracts Random Effects from Functional Columns | [tf](https://cran.r-project.org/package=tf), [lme4](https://cran.r-project.org/package=lme4) | fda, data transform |
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| [fda.scalerange](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.scalerange) | Linearly Transform the Domain of Functional Data | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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| [fda.smooth](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.smooth) | Smoothing Functional Columns | [tf](https://cran.r-project.org/package=tf), stats | fda, data transform |
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| [fda.tsfeats](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.tsfeats) | Time Series Feature Extraction | [tf](https://cran.r-project.org/package=tf), [tsfeatures](https://cran.r-project.org/package=tsfeatures) | fda, data transform |
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| [fda.wavelets](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.wavelets) | Discrete Wavelet transform features | [tf](https://cran.r-project.org/package=tf), [wavelets](https://cran.r-project.org/package=wavelets) | fda, data transform |
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| [fda.zoom](https://mlr3fda.mlr-org.com/dev/reference/mlr_pipeops_fda.zoom) | Zoom In/Out on Functional Columns | [tf](https://cran.r-project.org/package=tf) | fda, data transform |
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## Bugs, Questions, Feedback
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