Updates for CRAN and CUDA #226
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| cuda: ['11.2.1'] | |
| cuml: ['21.08', '21.10', '21.12'] | |
| r: ['release', 'devel'] | |
| asan: ['false', 'true'] | |
| runs-on: ['self-hosted', 'gpu'] | |
| container: | |
| image: nvidia/cuda:${{ matrix.cuda }}-devel-ubuntu18.04 | |
| options: --gpus all | |
| name: 'R: ${{ matrix.r }}, CUDA: ${{ matrix.cuda }}, CUML: ${{ matrix.cuml }}, ASAN: ${{ matrix.asan }}' | |
| env: | |
| NOT_CRAN: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| CUML_VERSION: ${{ matrix.cuml }} | |
| CUML4R_ENABLE_ASAN: ${{ matrix.asan }} | |
| DEBIAN_FRONTEND: 'noninteractive' | |
| steps: | |
| - run: | | |
| apt-get update -y | |
| apt-get install -y sudo software-properties-common dialog apt-utils tzdata | |
| if [[ $CUML4R_ENABLE_ASAN == 'true' ]]; then | |
| apt-get install -y libasan5 | |
| fi | |
| shell: bash | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| architecture: 'x64' | |
| - uses: r-lib/actions/setup-r@master | |
| with: | |
| r-version: ${{ matrix.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v1 | |
| with: | |
| extra-packages: rcmdcheck | |
| - name: Build {cuda.ml} | |
| id: build-pkg | |
| run: | | |
| cd .. | |
| ls -a | |
| rm -v cuda.ml_*.tar.gz | |
| R CMD build cuda.ml | |
| ls -a | |
| echo "::set-output name=pkg-dir::$(pwd)" | |
| - run: cp -v cuda.ml/.lsan-suppressions.txt /tmp | |
| working-directory: ${{ steps.build-pkg.outputs.pkg-dir }} | |
| - name: Check {cuda.ml} package | |
| run: | | |
| print(list.files(".")) | |
| pkg <- list.files(".", pattern = "cuda\\.ml_.*\\.tar\\.gz") | |
| stopifnot(length(pkg) == 1) | |
| reticulate::install_miniconda(force = TRUE) | |
| rcmdcheck_env <- ( | |
| if (identical(Sys.getenv("CUML4R_ENABLE_ASAN"), "true")) { | |
| c( | |
| LD_PRELOAD = "/usr/lib/x86_64-linux-gnu/libasan.so.5", | |
| ASAN_OPTIONS = "halt_on_error=0,new_delete_type_mismatch=0,alloc_dealloc_mismatch=0,protect_shadow_gap=0", | |
| LSAN_OPTIONS = "suppressions=/tmp/.lsan-suppressions.txt" | |
| ) | |
| } else { | |
| character() | |
| } | |
| ) | |
| rcmdcheck::rcmdcheck( | |
| path = pkg[[1]], | |
| args = c("--no-manual", "--as-cran"), | |
| check_dir="check", | |
| env = rcmdcheck_env | |
| ) | |
| shell: Rscript {0} | |
| working-directory: ${{ steps.build-pkg.outputs.pkg-dir }} | |
| - name: Show testthat output | |
| if: ${{ always() }} | |
| run: | | |
| find check -name 'testthat.Rout*' -type f -exec cat '{}' \; || : | |
| shell: bash | |
| working-directory: ${{ steps.build-pkg.outputs.pkg-dir }} | |
| - name: Check for sanitizer error(s) | |
| if: ${{ always() }} | |
| run: | | |
| ! find check -name 'testthat.Rout*' -type f -exec egrep -C 50 'ERROR: .*Sanitizer:' '{}' + | |
| shell: bash | |
| working-directory: ${{ steps.build-pkg.outputs.pkg-dir }} | |
| - name: Upload check results | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.r }}-results | |
| path: ${{ steps.build-pkg.outputs.pkg-dir }}/check |