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timonmerksappelhoff
timonmerk
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sappelhoff
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add test for montage coord_frame
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‎mne_bids/tests/data/ieeg_bids/README‎

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References
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----------
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Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Höchenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A. and Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software 4: (1896). https://doi.org/10.21105/joss.01896
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Holdgraf, C., Appelhoff, S., Bickel, S., Bouchard, K., D'Ambrosio, S., David, O., … Hermes, D. (2019). iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology. Scientific Data, 6, 102. https://doi.org/10.1038/s41597-019-0105-7
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‎mne_bids/tests/data/ieeg_bids/dataset_description.json‎

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{
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"Name": " ",
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"BIDSVersion": "1.6.0",
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"DatasetType": "raw",
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"Authors": [
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"[Unspecified]"
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]
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}

‎mne_bids/tests/data/ieeg_bids/participants.json‎

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{
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"participant_id": {
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"Description": "Unique participant identifier"
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},
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"age": {
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"Description": "Age of the participant at time of testing",
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"Units": "years"
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},
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"sex": {
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"Description": "Biological sex of the participant",
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"Levels": {
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"F": "female",
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"M": "male"
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}
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},
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"hand": {
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"Description": "Handedness of the participant",
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"Levels": {
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"R": "right",
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"L": "left",
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"A": "ambidextrous"
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}
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}
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}

‎mne_bids/tests/data/ieeg_bids/participants.tsv‎

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participant_id age sex hand
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sub-01 n/a n/a n/a

‎mne_bids/tests/data/ieeg_bids/sub-01/ses-01/ieeg/sub-01_ses-01_space-MNI152NLin2009bAsym_coordsystem.json‎

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{
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"iEEGCoordinateSystem": "MNI152NLin2009bAsym",
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"iEEGCoordinateSystemDescription": "mni",
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"iEEGCoordinateUnits": "mm"
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}

‎mne_bids/tests/data/ieeg_bids/sub-01/ses-01/ieeg/sub-01_ses-01_space-MNI152NLin2009bAsym_electrodes.tsv‎

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name x y z type
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ECOG_0 22.5 -38.5 83.0 ECOG
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ECOG_1 28.0 -29.0 81.5 ECOG
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ECOG_2 32.0 -19.5 78.0 ECOG
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ECOG_3 37.0 -10.5 73.5 ECOG
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ECOG_4 40.5 -2.0 69.5 ECOG
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ECOG_5 42.5 6.5 63.0 ECOG
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ECOG_6 45.5 13.5 55.5 ECOG
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ECOG_7 48.0 22.5 48.5 ECOG
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ECOG_8 45.5 13.5 55.5 ECOG
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ECOG_9 48.0 22.5 48.5 ECOG

‎mne_bids/tests/data/ieeg_bids/sub-01/ses-01/ieeg/sub-01_ses-01_task-audiovisual_run-01_channels.tsv‎

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name type units low_cutoff high_cutoff description sampling_frequency status status_description
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ECOG_0 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_1 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_2 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_3 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_4 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_5 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_6 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_7 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_8 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a
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ECOG_9 ECOG µV 0.0 500.0 Electrocorticography 1000.0 good n/a

‎mne_bids/tests/data/ieeg_bids/sub-01/ses-01/ieeg/sub-01_ses-01_task-audiovisual_run-01_ieeg.eeg‎

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‎mne_bids/tests/data/ieeg_bids/sub-01/ses-01/ieeg/sub-01_ses-01_task-audiovisual_run-01_ieeg.json‎

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{
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"TaskName": "audiovisual",
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"Manufacturer": "BrainProducts",
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"PowerLineFrequency": "n/a",
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"SamplingFrequency": 1000.0,
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"SoftwareFilters": "n/a",
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"RecordingDuration": 0.999,
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"RecordingType": "continuous",
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"iEEGReference": "n/a",
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"ECOGChannelCount": 10,
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"SEEGChannelCount": 0,
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"EEGChannelCount": 0,
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"EOGChannelCount": 0,
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"ECGChannelCount": 0,
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"EMGChannelCount": 0,
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"MiscChannelCount": 0,
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"TriggerChannelCount": 0
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}

‎mne_bids/tests/data/ieeg_bids/sub-01/ses-01/ieeg/sub-01_ses-01_task-audiovisual_run-01_ieeg.vhdr‎

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Brain Vision Data Exchange Header File Version 1.0
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; Written using pybv 0.6.0
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[Common Infos]
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Codepage=UTF-8
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DataFile=sub-01_ses-01_task-audiovisual_run-01_ieeg.eeg
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MarkerFile=sub-01_ses-01_task-audiovisual_run-01_ieeg.vmrk
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DataFormat=BINARY
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; Data orientation: MULTIPLEXED=ch1,pt1, ch2,pt1 ...
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DataOrientation=MULTIPLEXED
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NumberOfChannels=10
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; Sampling interval in microseconds
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SamplingInterval=1000.0
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[Binary Infos]
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BinaryFormat=IEEE_FLOAT_32
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[Channel Infos]
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; Each entry: Ch<Channel number>=<Name>,<Reference channel name>,
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; <Resolution in "Unit">,<Unit>, Future extensions..
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; Fields are delimited by commas, some fields might be omitted (empty).
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; Commas in channel names are coded as "\1".
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Ch1=ECOG_0,,0.1,µV
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Ch2=ECOG_1,,0.1,µV
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Ch3=ECOG_2,,0.1,µV
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Ch4=ECOG_3,,0.1,µV
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Ch5=ECOG_4,,0.1,µV
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Ch6=ECOG_5,,0.1,µV
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Ch7=ECOG_6,,0.1,µV
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Ch8=ECOG_7,,0.1,µV
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Ch9=ECOG_8,,0.1,µV
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Ch10=ECOG_9,,0.1,µV
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[Comment]
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