Comment openOmeroBdvXml test as it was not reliable due to the OMERO server not being responsive

Author: tischi

src/test/java/org/embl/mobie/io/imagedata/ImageDataTest.java

@@ -3,6 +3,8 @@
 import bdv.cache.SharedQueue;
 import bdv.util.Affine3DHelpers;
 import bdv.viewer.Source;
+import ch.epfl.biop.bdv.img.omero.command.OmeroConnectCommand;
+import ch.epfl.biop.bdv.img.omero.command.OmeroDisconnectCommand;
 import ij.ImagePlus;
 import ij.measure.Calibration;
 import mpicbg.spim.data.sequence.VoxelDimensions;
@@ -25,15 +27,17 @@
 
 class ImageDataTest < R extends RealType< R > >
 {
-    @Test
+    // NB: This is brittle as it relies on the omero-tim server to be responsive.
+    //     I had time-out issues; thus commenting out this test
+    // @Test
     public void openOmeroBdvXml() throws ExecutionException, InterruptedException
     {
         // References
         // https://github.com/mobie/mobie-io/issues/169
         // https://forum.image.sc/t/opening-omero-datasets-in-mobie/117612/22
 
         ImageJ imageJ = new ImageJ();
-        imageJ.command().run(ch.epfl.biop.bdv.img.omero.command.OmeroConnectCommand.class, true,
+        imageJ.command().run( OmeroConnectCommand.class, true,
                 "host", "omero-tim.gerbi-gmb.de",
                 "username", "read-tim",
                 "password", "read-tim"
@@ -56,7 +60,7 @@ public void openOmeroBdvXml() throws ExecutionException, InterruptedException
         assertEquals( "Slide_00.vsi [10x_09]-FL FITC", imageData.getName( 7 ) );
         assertEquals( 1000, imageData.getMetadata( 10 ).maxIntensity() );
 
-        imageJ.command().run(ch.epfl.biop.bdv.img.omero.command.OmeroDisconnectCommand .class, true,
+        imageJ.command().run( OmeroDisconnectCommand.class, true,
                 "host", "omero-tim.gerbi-gmb.de"
         ).get();
 
@@ -74,7 +78,7 @@ public void openPNG()
         assertEquals( 3, valuePair.getA().getRealDouble() );
         assertEquals( 220, valuePair.getB().getRealDouble() );
         VoxelDimensions voxelDimensions = imageData.getSourcePair( 0 ).getB().getVoxelDimensions();
-        assertNotNull( voxelDimensions );
+        assertTrue( voxelDimensions.unit().equals( "pixel" ) || voxelDimensions.unit().equals( "px" ) );
         System.out.println("...openPNG: Done!");
     }
 
@@ -90,7 +94,7 @@ public void openMRC()
         ValuePair< R, R > valuePair = computeMinMax( imageData );
         assertEquals( -1468, valuePair.getA().getRealDouble() );
         assertEquals( 9827, valuePair.getB().getRealDouble() );
-        assertNotNull( voxelDimensions );
+        assertEquals( "µm",  voxelDimensions.unit() );
         System.out.println("...openMRC: Done!");
     }
 
@@ -111,6 +115,6 @@ private static < R extends RealType< R > > ValuePair< R, R > computeMinMax( Imag
 
     public static void main( String[] args ) throws ExecutionException, InterruptedException
     {
-        //new ImageDataTest().openOmeroBdvXml();
+        new ImageDataTest().openMRC();
     }
 }