Open PNG and other formats with pixel units, WIP

tischi · tischi · commit 4b0ab08535a0 · 2026-04-24T10:00:23.000+02:00
diff --git a/src/main/java/org/embl/mobie/io/imagedata/BioFormatsImageData.java b/src/main/java/org/embl/mobie/io/imagedata/BioFormatsImageData.java
@@ -39,8 +39,6 @@ public BioFormatsImageData( String uri, SharedQueue sharedQueue )
                         )
                         ? true : false;
 
-                usePixelUnits = false;
-
                 List< OpenerSettings > settingsList = new ArrayList<>();
                 int numSeries = BioFormatsHelper.getNSeries(file);
 
diff --git a/src/test/java/org/embl/mobie/io/imagedata/BioFormatsImageDataTest.java b/src/test/java/org/embl/mobie/io/imagedata/BioFormatsImageDataTest.java
@@ -14,6 +14,7 @@ class BioFormatsImageDataTest
     @Test
     public void openPNG()
     {
+        // https://github.com/mobie/mobie-viewer-fiji/issues/1247
         ImageData< ? > imageData = ImageDataOpener.open(
                 "src/test/resources/images/boats.png",
                 ImageDataFormat.fromPath( "src/test/resources/images/boats.png" ),

Original file line number	Diff line number	Diff line change
`@@ -39,8 +39,6 @@ public BioFormatsImageData( String uri, SharedQueue sharedQueue )`
`39`	`39`	`)`
`40`	`40`	`? true : false;`
`41`	`41`
`42`		`- usePixelUnits = false;`
`43`		`-`
`44`	`42`	`List< OpenerSettings > settingsList = new ArrayList<>();`
`45`	`43`	`int numSeries = BioFormatsHelper.getNSeries(file);`
`46`	`44`
Original file line number	Diff line number	Diff line change
`@@ -14,6 +14,7 @@ class BioFormatsImageDataTest`
`14`	`14`	`@Test`
`15`	`15`	`public void openPNG()`
`16`	`16`	`{`
	`17`	`+ // https://github.com/mobie/mobie-viewer-fiji/issues/1247`
`17`	`18`	`ImageData< ? > imageData = ImageDataOpener.open(`
`18`	`19`	`"src/test/resources/images/boats.png",`
`19`	`20`	`ImageDataFormat.fromPath( "src/test/resources/images/boats.png" ),`