ci(release): set version to 3.9.0, update plugins from DFN files, update changelog

github-actions[bot] · github-actions[bot] · commit e4f34945737f · 2024-12-20T01:46:00.000Z
diff --git a/.docs/md/version_changes.md b/.docs/md/version_changes.md
@@ -1,4 +1,34 @@
 # Changelog
+### Version 3.9.0
+
+#### New features
+
+* [feat(plot_centers)](https://github.com/modflowpy/flopy/commit/c6a41abb496039b65fbe52fd6c3f2df011e492be): Add plot_centers support to PlotMapView and PlotCrossSection (#2318). Committed by Joshua Larsen on 2024-10-07.
+* [feat(get-modflow)](https://github.com/modflowpy/flopy/commit/d800ce5638e7a0983985881f2fa5d37207e3560b): Support windows extended build (#2356). Committed by mjreno on 2024-11-06.
+* [feat(binaryfile)](https://github.com/modflowpy/flopy/commit/4eac63176f1328a22a55e1cf131db55b8ca929a8): Add head/budget file reversal script (#2383). Committed by wpbonelli on 2024-11-27.
+
+#### Bug fixes
+
+* [fix(ZoneFile6.load)](https://github.com/modflowpy/flopy/commit/99d57e6fd0d0d41c364f9c76f7800ec3be0d179a): Add split statement to input read (#2330). Committed by Joshua Larsen on 2024-10-09.
+* [fix(resample_to_grid)](https://github.com/modflowpy/flopy/commit/15f1b94a45487e42aa36afdd2abb2b111c2197a6): Fix unintended extrapolation  (#2331). Committed by Joshua Larsen on 2024-10-09.
+* [fix(utils)](https://github.com/modflowpy/flopy/commit/558f4a8c9d17241e21e7d41c3a75a9a6380a9fb1): Exclude ncf from mf6 output utils (#2336). Committed by mjreno on 2024-10-16.
+* [fix(masked_4D_arrays)](https://github.com/modflowpy/flopy/commit/332a310ef0b43130fd2f37cf7cd4abe954484524): Allow re-use of preceding spd data if empty (#2314). Committed by martclanor on 2024-10-20.
+* [fix(gridintersect)](https://github.com/modflowpy/flopy/commit/34043ab58eb254feee0c2f47cb63e057905b49d7): Fix multiple issues (#2343). Committed by Davíd Brakenhoff on 2024-10-25.
+
+#### Refactoring
+
+* [refactor(PackageContainer)](https://github.com/modflowpy/flopy/commit/f378f84a5677b99191ce178bb1c5b67ac1d1bd66): Compose not inherit, deprecate methods (#2324). Committed by Marnix on 2024-10-14.
+* [refactor(Modpath7.create_mp7)](https://github.com/modflowpy/flopy/commit/3a2c4946a047e20e35341d7e4266f8dae3ac5316): Expose porosity parameter of Modpath7Bas (#2340). Committed by martclanor on 2024-10-20.
+* [refactor(gridintersect)](https://github.com/modflowpy/flopy/commit/f8810c20097004a940e96ee0f2bc0229366a3899): Clean up gridintersect (#2346). Committed by Davíd Brakenhoff on 2024-10-24.
+* [refactor(Mf6Splitter)](https://github.com/modflowpy/flopy/commit/acc5a5b6580bdd6e93a24970db7d0b62d54e2485): Added split_multi_model method (#2352). Committed by Joshua Larsen on 2024-11-06.
+* [refactor(mf6)](https://github.com/modflowpy/flopy/commit/4e0906426ef70235a7546c31d263904fa3249a9d): Deprecate mf6 checks (#2357). Committed by wpbonelli on 2024-11-06.
+* [refactor](https://github.com/modflowpy/flopy/commit/a5545c6fc23c2ea1476f5b5650ce294ae9d2509f): Apply suggestions from pyupgrade (#2361). Committed by Mike Taves on 2024-11-11.
+* [refactor](https://github.com/modflowpy/flopy/commit/bb9824e8aaea04a43d911724445cf0610301d236): Fix long lines to resolve check E501 (#2368). Committed by Mike Taves on 2024-11-14.
+* [refactor](https://github.com/modflowpy/flopy/commit/373b82d3b864fe54bf5675e2a1aabbe4b6eee58e): Resolve ruff check F821 for undefined names (#2374). Committed by Mike Taves on 2024-11-18.
+* [refactor](https://github.com/modflowpy/flopy/commit/22b5992ccd0e8280ee831611e8823bdb0d22ae3b): Apply fixes for flake8 comprehensions (C4) (#2376). Committed by Mike Taves on 2024-11-18.
+* [refactor(deprecations)](https://github.com/modflowpy/flopy/commit/1993af155f9db97f5e4fb1a0090926e4cb65cf19): Deprecate flopy.mf6.utils.reference module (#2375). Committed by wpbonelli on 2024-11-19.
+* [refactor](https://github.com/modflowpy/flopy/commit/4c1bf6cb486f8bd5bd9d25c5c7cf159fc65ecd4b): Apply Ruff-specific rule checks (#2377). Committed by Mike Taves on 2024-11-22.
+
 ### Version 3.8.2
 
 #### Bug fixes
diff --git a/CITATION.cff b/CITATION.cff
@@ -3,8 +3,8 @@ message: If you use this software, please cite both the article from preferred-c
   references, and the software itself.
 type: software
 title: FloPy
-version: 3.9.0.dev2
-date-released: '2024-10-03'
+version: 3.9.0
+date-released: '2024-12-20'
 doi: 10.5066/F7BK19FH
 abstract: A Python package to create, run, and post-process MODFLOW-based models.
 repository-artifact: https://pypi.org/project/flopy
diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 
 <img src="https://raw.githubusercontent.com/modflowpy/flopy/master/examples/images/flopy3.png" alt="flopy3" style="width:50;height:20">
 
-### Version 3.9.0.dev2
+### Version 3.9.0
 [![flopy continuous integration](https://github.com/modflowpy/flopy/actions/workflows/commit.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/commit.yml)
 [![Read the Docs](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml)
 
@@ -150,7 +150,7 @@ How to Cite
 
 ##### ***Software/Code citation for FloPy:***
 
-[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0.dev2: U.S. Geological Survey Software Release, 03 October 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
+[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0: U.S. Geological Survey Software Release, 20 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
 
 
 Additional FloPy Related Publications
diff --git a/docs/PyPI_release.md b/docs/PyPI_release.md
@@ -30,4 +30,4 @@ How to Cite
 
 *Software/Code citation for FloPy:*
 
-[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0.dev2: U.S. Geological Survey Software Release, 03 October 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
+[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0: U.S. Geological Survey Software Release, 20 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
diff --git a/flopy/version.py b/flopy/version.py
@@ -1,4 +1,4 @@
 # flopy version file automatically created using
-# update_version.py on October 03, 2024 11:54:30
+# update_version.py on December 20, 2024 01:37:30
 
-__version__ = "3.9.0.dev2"
+__version__ = "3.9.0"
diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-3.9.0.dev2
+3.9.0

Original file line number	Diff line number	Diff line change
`@@ -30,4 +30,4 @@ How to Cite`
`30`	`30`
`31`	`31`	`Software/Code citation for FloPy:`
`32`	`32`
`33`		`-[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0.dev2: U.S. Geological Survey Software Release, 03 October 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)`
	`33`	`+[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0: U.S. Geological Survey Software Release, 20 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)`