Fix CMakeLists.txt: update source_io file paths to module_output directory

Author: abacus_fixer

source/source_basis/module_nao/test/CMakeLists.txt

@@ -16,7 +16,7 @@ AddTest(
     ../numerical_radial.cpp
     ../../module_ao/ORB_atomic_lm.cpp
     ../../module_ao/ORB_atomic.cpp
-    ../../../source_io/orb_io.cpp
+    ../../../source_io/module_output/orb_io.cpp
   LIBS parameter ${math_libs} device base 
 )
 

source/source_estate/test/CMakeLists.txt

@@ -97,7 +97,7 @@ AddTest(
 AddTest(
   TARGET charge_extra
   LIBS parameter  ${math_libs} base device cell_info 
-  SOURCES charge_extra_test.cpp ../module_charge/charge_extra.cpp ../../source_io/read_cube.cpp ../../source_io/write_cube.cpp
+  SOURCES charge_extra_test.cpp ../module_charge/charge_extra.cpp ../../source_io/module_output/read_cube.cpp ../../source_io/module_output/write_cube.cpp
   ../../source_io/module_output/output.cpp ../../source_base/module_fft/fft_bundle.cpp ../../source_base/module_fft/fft_cpu.cpp
 )
 

source/source_io/module_mulliken/output_mulliken.cpp

@@ -1,5 +1,4 @@
 #include "source_io/module_mulliken/output_mulliken.h"
-
 #include "source_io/module_parameter/parameter.h"
 #include "source_base/formatter.h"
 #include "source_base/name_angular.h"

source/source_lcao/module_lr/utils/test/CMakeLists.txt

@@ -3,7 +3,7 @@ AddTest(
   TARGET lr_util_phys_test
   LIBS parameter base ${math_libs} device container planewave #for FFT
   SOURCES lr_util_physics_test.cpp  ../lr_util.cpp
-  ../../../../source_io/orb_io.cpp
+  ../../../../source_io/module_output/orb_io.cpp
 )
 
 AddTest(

source/source_md/test/CMakeLists.txt

@@ -48,7 +48,7 @@ list(APPEND depend_files
   ../../source_io/module_output/output.cpp
   ../../source_io/module_output/output_log.cpp
   ../../source_io/module_output/print_info.cpp
-  ../../source_io/cif_io.cpp
+  ../../source_io/module_output/cif_io.cpp
   ../../source_esolver/esolver_lj.cpp
   ../../source_base/parallel_reduce.cpp
   ../../source_base/parallel_global.cpp

source/source_psi/test/CMakeLists.txt

@@ -16,10 +16,10 @@ AddTest(
         ../../source_cell/atom_spec.cpp
         ../../source_cell/parallel_kpoints.cpp
         ../../source_cell/test/support/mock_unitcell.cpp
-        ../../source_io/orb_io.cpp
+        ../../source_io/module_output/orb_io.cpp
         ../../source_io/module_output/write_pao.cpp
         ../../source_io/module_wf/read_wfc_pw.cpp
-        ../../source_io/binstream.cpp
+        ../../source_io/module_output/binstream.cpp
         ../../source_io/module_output/filename.cpp
 )
 endif()

source/source_relax/test/CMakeLists.txt

@@ -48,7 +48,7 @@ AddTest(
           ../lattice_change_cg.cpp
           ../lattice_change_basic.cpp
           mock_remake_cell.cpp
-          ../../source_io/orb_io.cpp
+          ../../source_io/module_output/orb_io.cpp
 )
 
 AddTest(