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#################################################################################
# GLOBALS #
#################################################################################
PROJECT_NAME = ecg-svd
PYTHON_VERSION = 3.12
PYTHON_INTERPRETER = python
#################################################################################
# COMMANDS #
#################################################################################
## Install Python dependencies
.PHONY: requirements
requirements:
$(PYTHON_INTERPRETER) -m pip install -U pip
$(PYTHON_INTERPRETER) -m pip install -r requirements.txt
## Delete all compiled Python files
.PHONY: clean
clean:
find . -type f -name "*.py[co]" -delete
find . -type d -name "__pycache__" -delete
## Lint using flake8, black, and isort (use `make format` to do formatting)
.PHONY: lint
lint:
flake8 ecg_svd
isort --check --diff ecg_svd
black --check ecg_svd
## Format source code with black
.PHONY: format
format:
isort ecg_svd
black ecg_svd
## Launch all the experiments on the default file
.PHONY: experiment
experiment:
python experiments/0_baseline.py
python experiments/1_svd_ss_sc.py
python experiments/2_svd_ss_mc.py
python experiments/3_svd_ss_mc.py
python experiments/4_svd_ms_sc.py
python experiments/5_fastica_ss_ms.py
python experiments/6_fastica_ms_mc.py
python experiments/7_tucker_ss_mc.py
python experiments/8_tucker_ms_mc.py
python experiments/9_parafac_ss_mc.py
python experiments/10_parafac_ms_mc.py
python ecg_svd/evaluation/reporting.py
.PHONY: r01
r01:
python experiments/0_baseline.py --filename "r01.edf"
python experiments/1_svd_ss_sc.py --filename "r01.edf"
python experiments/2_svd_ss_mc.py --filename "r01.edf"
python experiments/3_svd_ss_mc.py --filename "r01.edf"
python experiments/4_svd_ms_sc.py --filename "r01.edf"
python experiments/5_fastica_ss_mc.py --filename "r01.edf"
python experiments/6_fastica_ms_mc.py --filename "r01.edf"
python experiments/7_tucker_ss_mc.py --filename "r01.edf"
python experiments/8_tucker_ms_mc.py --filename "r01.edf"
python experiments/9_parafac_ss_mc.py --filename "r01.edf"
python experiments/10_parafac_ms_mc.py --filename "r01.edf"
python ecg_svd/evaluation/reporting.py --edf-name "r01"
python ecg_svd/visualization/plots.py plot_mecg --edf-name "r01"
.PHONY: r04
r04:
python experiments/0_baseline.py --filename "r04.edf"
python experiments/1_svd_ss_sc.py --filename "r04.edf"
python experiments/2_svd_ss_mc.py --filename "r04.edf"
python experiments/3_svd_ss_mc.py --filename "r04.edf"
python experiments/4_svd_ms_sc.py --filename "r04.edf"
python experiments/5_fastica_ss_mc.py --filename "r04.edf"
python experiments/6_fastica_ms_mc.py --filename "r04.edf"
python experiments/7_tucker_ss_mc.py --filename "r04.edf"
python experiments/8_tucker_ms_mc.py --filename "r04.edf"
python experiments/9_parafac_ss_mc.py --filename "r04.edf"
python experiments/10_parafac_ms_mc.py --filename "r04.edf"
python ecg_svd/evaluation/reporting.py --edf-name "r04"
python ecg_svd/visualization/plots.py plot_mecg --edf-name "r04"
.PHONY: r07
r07:
python experiments/0_baseline.py --filename "r07.edf"
python experiments/1_svd_ss_sc.py --filename "r07.edf"
python experiments/2_svd_ss_mc.py --filename "r07.edf"
python experiments/3_svd_ss_mc.py --filename "r07.edf"
python experiments/4_svd_ms_sc.py --filename "r07.edf"
python experiments/5_fastica_ss_mc.py --filename "r07.edf"
python experiments/6_fastica_ms_mc.py --filename "r07.edf"
python experiments/7_tucker_ss_mc.py --filename "r07.edf"
python experiments/8_tucker_ms_mc.py --filename "r07.edf"
python experiments/9_parafac_ss_mc.py --filename "r07.edf"
python experiments/10_parafac_ms_mc.py --filename "r07.edf"
python ecg_svd/evaluation/reporting.py --edf-name "r07"
python ecg_svd/visualization/plots.py plot_mecg --edf-name "r07"
.PHONY: r08
r08:
python experiments/0_baseline.py --filename "r08.edf"
python experiments/1_svd_ss_sc.py --filename "r08.edf"
python experiments/2_svd_ss_mc.py --filename "r08.edf"
python experiments/3_svd_ss_mc.py --filename "r08.edf"
python experiments/4_svd_ms_sc.py --filename "r08.edf"
python experiments/5_fastica_ss_mc.py --filename "r08.edf"
python experiments/6_fastica_ms_mc.py --filename "r08.edf"
python experiments/7_tucker_ss_mc.py --filename "r08.edf"
python experiments/8_tucker_ms_mc.py --filename "r08.edf"
python experiments/9_parafac_ss_mc.py --filename "r08.edf"
python experiments/10_parafac_ms_mc.py --filename "r08.edf"
python ecg_svd/evaluation/reporting.py --edf-name "r08"
python ecg_svd/visualization/plots.py plot_mecg --edf-name "r08"
.PHONY: r10
r10:
python experiments/0_baseline.py --filename "r10.edf"
python experiments/1_svd_ss_sc.py --filename "r10.edf"
python experiments/2_svd_ss_mc.py --filename "r10.edf"
python experiments/3_svd_ss_mc.py --filename "r10.edf"
python experiments/4_svd_ms_sc.py --filename "r10.edf"
python experiments/5_fastica_ss_mc.py --filename "r10.edf"
python experiments/6_fastica_ms_mc.py --filename "r10.edf"
python experiments/7_tucker_ss_mc.py --filename "r10.edf"
python experiments/8_tucker_ms_mc.py --filename "r10.edf"
python experiments/9_parafac_ss_mc.py --filename "r10.edf"
python experiments/10_parafac_ms_mc.py --filename "r10.edf"
python ecg_svd/evaluation/reporting.py --edf-name "r10"
python ecg_svd/visualization/plots.py plot_mecg --edf-name "r10"
## Launch all the experiments on all the files
.PHONY: experiments
experiments:
python experiments/0_baseline.py --filename "r01.edf"
python experiments/0_baseline.py --filename "r04.edf"
python experiments/0_baseline.py --filename "r07.edf"
python experiments/0_baseline.py --filename "r08.edf"
python experiments/0_baseline.py --filename "r10.edf"
python experiments/1_svd_ss_sc.py --filename "r01.edf"
python experiments/1_svd_ss_sc.py --filename "r04.edf"
python experiments/1_svd_ss_sc.py --filename "r07.edf"
python experiments/1_svd_ss_sc.py --filename "r08.edf"
python experiments/1_svd_ss_sc.py --filename "r10.edf"
python experiments/2_svd_ss_mc.py --filename "r01.edf"
python experiments/2_svd_ss_mc.py --filename "r04.edf"
python experiments/2_svd_ss_mc.py --filename "r07.edf"
python experiments/2_svd_ss_mc.py --filename "r08.edf"
python experiments/2_svd_ss_mc.py --filename "r10.edf"
python experiments/3_svd_ss_mc.py --filename "r01.edf"
python experiments/3_svd_ss_mc.py --filename "r04.edf"
python experiments/3_svd_ss_mc.py --filename "r07.edf"
python experiments/3_svd_ss_mc.py --filename "r08.edf"
python experiments/3_svd_ss_mc.py --filename "r10.edf"
python experiments/4_svd_ms_sc.py --filename "r01.edf"
python experiments/4_svd_ms_sc.py --filename "r04.edf"
python experiments/4_svd_ms_sc.py --filename "r07.edf"
python experiments/4_svd_ms_sc.py --filename "r08.edf"
python experiments/4_svd_ms_sc.py --filename "r10.edf"
python experiments/5_fastica_ss_mc.py --filename "r01.edf"
python experiments/5_fastica_ss_mc.py --filename "r04.edf"
python experiments/5_fastica_ss_mc.py --filename "r07.edf"
python experiments/5_fastica_ss_mc.py --filename "r08.edf"
python experiments/5_fastica_ss_mc.py --filename "r10.edf"
python experiments/6_fastica_ms_mc.py --filename "r01.edf"
python experiments/6_fastica_ms_mc.py --filename "r04.edf"
python experiments/6_fastica_ms_mc.py --filename "r07.edf"
python experiments/6_fastica_ms_mc.py --filename "r08.edf"
python experiments/6_fastica_ms_mc.py --filename "r10.edf"
python experiments/7_tucker_ss_mc.py --filename "r01.edf"
python experiments/7_tucker_ss_mc.py --filename "r04.edf"
python experiments/7_tucker_ss_mc.py --filename "r07.edf"
python experiments/7_tucker_ss_mc.py --filename "r08.edf"
python experiments/7_tucker_ss_mc.py --filename "r10.edf"
python experiments/8_tucker_ms_mc.py --filename "r01.edf"
python experiments/8_tucker_ms_mc.py --filename "r04.edf"
python experiments/8_tucker_ms_mc.py --filename "r07.edf"
python experiments/8_tucker_ms_mc.py --filename "r08.edf"
python experiments/8_tucker_ms_mc.py --filename "r10.edf"
python experiments/9_parafac_ss_mc.py --filename "r01.edf"
python experiments/9_parafac_ss_mc.py --filename "r04.edf"
python experiments/9_parafac_ss_mc.py --filename "r07.edf"
python experiments/9_parafac_ss_mc.py --filename "r08.edf"
python experiments/9_parafac_ss_mc.py --filename "r10.edf"
python experiments/10_parafac_ms_mc.py --filename "r01.edf"
python experiments/10_parafac_ms_mc.py --filename "r04.edf"
python experiments/10_parafac_ms_mc.py --filename "r07.edf"
python experiments/10_parafac_ms_mc.py --filename "r08.edf"
python experiments/10_parafac_ms_mc.py --filename "r10.edf"
.PHONY: reports
reports:
python ecg_svd/evaluation/reporting.py
.PHONY: plots
plots:
python ecg_svd/visualization/plots.py "r01"
python ecg_svd/visualization/plots.py "r04"
python ecg_svd/visualization/plots.py "r07"
python ecg_svd/visualization/plots.py "r08"
python ecg_svd/visualization/plots.py "r10"
## Set up Python interpreter environment
.PHONY: create_environment
create_environment:
@bash -c "if [ ! -z `which virtualenvwrapper.sh` ]; then source `which virtualenvwrapper.sh`; mkvirtualenv $(PROJECT_NAME) --python=$(PYTHON_INTERPRETER); else mkvirtualenv.bat $(PROJECT_NAME) --python=$(PYTHON_INTERPRETER); fi"
@echo ">>> New virtualenv created. Activate with:\nworkon $(PROJECT_NAME)"
#################################################################################
# PROJECT RULES #
#################################################################################
## Make dataset
.PHONY: data
data: requirements
$(PYTHON_INTERPRETER) ecg_svd/dataset.py
#################################################################################
# Self Documenting Commands #
#################################################################################
.DEFAULT_GOAL := help
define PRINT_HELP_PYSCRIPT
import re, sys; \
lines = '\n'.join([line for line in sys.stdin]); \
matches = re.findall(r'\n## (.*)\n[\s\S]+?\n([a-zA-Z_-]+):', lines); \
print('Available rules:\n'); \
print('\n'.join(['{:25}{}'.format(*reversed(match)) for match in matches]))
endef
export PRINT_HELP_PYSCRIPT
help:
@$(PYTHON_INTERPRETER) -c "${PRINT_HELP_PYSCRIPT}" < $(MAKEFILE_LIST)