Update README.md

Author: rashatwi

README.md

@@ -6,68 +6,77 @@
 
 # <div align="center">MDPropTools: MD Property Tools</div>
 
-[//]: # ([![Downloads]&#40;https://static.pepy.tech/badge/mdproptools&#41;]&#40;https://pepy.tech/project/mdproptools&#41;)
-
-[//]: # ([![Downloads]&#40;https://static.pepy.tech/badge/mdproptools/month&#41;]&#40;https://pepy.tech/project/mdproptools&#41;)
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-[//]: # ([![GitHub tag]&#40;https://img.shields.io/github/tag/molmd/mdproptools&#41;]&#40;https://GitHub.com/molmd/mdproptools/tags/&#41;)
+[//]: # "[![Downloads](https://static.pepy.tech/badge/mdproptools)](https://pepy.tech/project/mdproptools)"
+[//]: # "[![Downloads](https://static.pepy.tech/badge/mdproptools/month)](https://pepy.tech/project/mdproptools)"
+[//]: # "[![GitHub tag](https://img.shields.io/github/tag/molmd/mdproptools)](https://GitHub.com/molmd/mdproptools/tags/)"
 
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 [![PyPI version](https://img.shields.io/pypi/v/MDPropTools)](https://pypi.org/project/mdproptools)
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-
-`MDPropTools` is a Python package for computing structural and dynamical properties from 
+`MDPropTools` is a Python package for computing structural and dynamical properties from
 [LAMMPS](https://www.lammps.org/#gsc.tab=0) trajectory and output files.
 
 The supported properties are:
 
-| Category    | Property                                          |
-|-------------|---------------------------------------------------|
-| Structural  | Radial distribution function (RDF)                |
-|             | Coordination number                               |
-|             | Cluster analysis                                  |
-|             | Hydration number                                  |
-|             | Number density                                    |
-| Dynamical   | Mean square displacement (MSD)                    |
-|             | Diffusion coefficient                             |
-|             | Ionic conductivity (using Green-Kubo relation)    |
-|             | Viscosity (using Green-Kubo relation)             |
-|             | Residence time                                    |
-
+| Category   | Property                                       |
+| ---------- | ---------------------------------------------- |
+| Structural | Radial distribution function (RDF)             |
+|            | Coordination number                            |
+|            | Cluster analysis                               |
+|            | Hydration number                               |
+|            | Number density                                 |
+| Dynamical  | Mean square displacement (MSD)                 |
+|            | Diffusion coefficient                          |
+|            | Ionic conductivity (using Green-Kubo relation) |
+|            | Viscosity (using Green-Kubo relation)          |
+|            | Residence time                                 |
 
 The release history and changelog can be found in [the changelog](CHANGELOG.md).
 
 ## 📦 Installation
+
 `MDPropTools` can be installed using pip:
-````
+
+```
 pip install mdproptools
-````
+```
+
 Or by cloning the repository and running the setup script:
-````
+
+```
 git clone https://github.com/molmd/mdproptools.git
 cd mdproptools
+pip install -r requirements.txt
 pip install .
-````
-If you are planning to contribute to the development of `MDPropTools` and need access 
+```
+
+If you are planning to contribute to the development of `MDPropTools` and need access
 to development tools and dependencies, you can install the package with the `dev` extra:
-````
+
+```
 pip install ".[dev]"
-````
+```
+
 > [!IMPORTANT]  
-> `MDPropTools` has been tested using Python 3.7. It is recommended to use this version. 
+> `MDPropTools` has been tested using Python 3.10. It is recommended to use this version.
+
+## 💻 Usage
 
-## 💻 Usage 
 For examples on how to use `MDPropTools`, please see the Jupyter notebooks in the [examples](https://github.com/molmd/mdproptools/tree/master/examples) directory.
 
-## 👥 Contributing 
+## 👥 Contributing
+
 All bug reports, suggestions, feedback, and pull requests occurs in the [MDPropTools GitHub repository](https://github.com/molmd/mdproptools). Some contribution guidelines can be found in the [contributing notes](CONTRIBUTING.md).
 
-## 📖 Citation 
+## 📖 Citation
+
 If you use `MDPropTools` in your research, please consider citing the following paper:
+
 - Atwi, R., Bliss, M., Makeev, M., & Rajput, N. N. (2022). [MISPR: An automated infrastructure for high-throughput DFT and MD simulations](https://www.nature.com/articles/s41598-022-20009-w). Scientific Reports, 12(1), 1-16.
 
 ## 📜 License Information
-`MDPropTools` is a free, open-source software package (distributed under the [MIT license](https://github.com/molmd/mdproptools/blob/master/LICENSE)).
+
+`MDPropTools` is a free, open-source software package (distributed under the [MIT license](https://github.com/molmd/mdproptools/blob/master/LICENSE)).