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Fix page references
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docs/source/installation/dependencies.rst

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Required Software
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---------------------------------
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.. _chem-software-deps:
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Computational chemistry software dependencies
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=============================================
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At the backend, MISPR uses:
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machines, the user typically needs to load their corresponding modules
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before their use.
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.. _py-package-deps:
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Python package dependencies
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=================================
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* `pymatgen <https://pymatgen.org>`_: MISPR uses pymatgen for handling

docs/source/installation/index.rst

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Before installing MISPR, you need to follow the steps below in order:
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1. (Optional) Create a :ref:`installation/dependencies:Conda environment`
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2. Make sure you have access to the :ref:`installation/dependencies:Required Software:Computational chemistry software dependencies`
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2. Make sure you have access to the :ref:`computational chemistry software dependencies <chem-software-deps>`
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needed to run the DFT and MD simulations
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3. Install :ref:`installation/dependencies:Required Software:Python package dependencies`
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3. Install :ref:`python package dependencies <py-package-deps>`
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4. Set up :ref:`installation/dependencies:MongoDB` database
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5. :ref:`Install MISPR <installation/index:Installing MISPR>`
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6. Prepare the :doc:`configuration files <configuration>`

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