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Fix page references
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docs/source/installation/index.rst

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Before installing MISPR, you need to follow the steps below in order:
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1. (Optional) Create a :ref:`installation/dependencies:Conda environment`
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2. Make sure you have access to the :ref:`installation/dependencies:Computational chemistry software`
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2. Make sure you have access to the :ref:`Required Software <installation/dependencies:Required Software>`
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needed to run the DFT and MD simulations
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3. Install :ref:`installation/dependencies:Base Python libraries and dependencies`
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3. Install :ref:`Required Software <installation/dependencies:Python package dependencies>`
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4. Set up :ref:`installation/dependencies:MongoDB` database
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5. :ref:`Install MISPR <installation/index:Installing MISPR>`
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6. Prepare the :doc:`configuration files <configuration>`

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