genome-kmers/pyproject.toml at main · mrperkett/genome-kmers · GitHub

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[tool.poetry]
name = "genome-kmers"
version = "1.0.1"
description = "fast and memory-efficient genomic k-mer calculations"
authors = ["Matthew Perkett"]
readme = "README.md"
license = "LICENSE"
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
]

[tool.poetry.dependencies]
python = "^3.9"
biopython = "^1.83"
numba = "^0.59.1"
numpy = "^1.26.4"
pandas = "^2.2.2"
h5py = "^3.11.0"


[tool.poetry.group.dev.dependencies]
flake8 = "^7.0.0"
isort = "^5.13.2"
sphinx = "^7.3.7"
sphinx-rtd-theme = "^2.0.0"


[tool.poetry.group.test.dependencies]
pytest = "^8.2.2"
pytest-mock = "^3.14.0"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.black]
line-length = 100

[tool.isort]
profile = "black"

[tool.pytest.ini_options]
addopts = [
    "--import-mode=importlib",
]
pythonpath = ["src"]

[project.urls]
Homepage = "https://genome-kmers.readthedocs.io/en/latest/index.html"
Documentation = "https://genome-kmers.readthedocs.io/en/latest/index.html"
Issues = "https://github.com/mrperkett/genome-kmers/issues"