shaking-regime-gut-bacteria/.zenodo.json at main · msysbio/shaking-regime-gut-bacteria · GitHub

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{
  "title": "Analysis code for: Shaking regimes influence the growth of human gut bacteria",
  "upload_type": "software",
  "description": "R scripts that reproduce every analysis and figure in the paper 'Shaking regimes influence the growth of human gut bacteria' from the deposited data: endpoint-OD contrasts under static, pulsed and continuous shaking, between-run variance, within-plate reproducibility, flow-cytometry confirmation, OD-to-cell-count calibration, and blinded morphology scoring.",
  "creators": [
    {"name": "Daodu, Adedamola Godwin", "affiliation": "KU Leuven, Laboratory of Molecular Bacteriology, Rega Institute"},
    {"name": "Saha, Pallabita", "affiliation": "KU Leuven, Laboratory of Molecular Bacteriology, Rega Institute"},
    {"name": "Bravo-Ruiseco, Gabriela", "affiliation": "KU Leuven, Laboratory of Molecular Bacteriology, Rega Institute"},
    {"name": "Zhou, Xingjian", "affiliation": "KU Leuven, Laboratory of Molecular Bacteriology, Rega Institute"},
    {"name": "Faust, Karoline", "affiliation": "KU Leuven, Laboratory of Molecular Bacteriology, Rega Institute", "orcid": "0000-0001-7129-2803"}
  ],
  "license": "cc-by-nc-4.0",
  "keywords": ["gut microbiome", "synthetic microbial communities", "optical density", "flow cytometry", "shaking regime", "microplate reader", "anaerobic bacteria", "reproducibility", "R"]
}